Your job contains 1 sequence.
>007084
MMSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTR
EFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGIS
KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA
PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA
LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN
PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL
AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL
PNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDM
YNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNNSSYSGQGG
GSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDTGSRQSGRFGDLGDNHSS
RSSGGFTDFFGSSGNKQY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007084
(618 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 1652 4.4e-176 3
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ... 1551 3.8e-173 4
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 1160 1.7e-120 2
ZFIN|ZDB-GENE-031113-10 - symbol:ddx21 "DEAD (Asp-Glu-Ala... 741 2.5e-75 2
UNIPROTKB|F1MMK3 - symbol:DDX50 "Uncharacterized protein"... 726 2.3e-74 2
UNIPROTKB|Q9NR30 - symbol:DDX21 "Nucleolar RNA helicase 2... 724 3.7e-74 2
UNIPROTKB|F1SUG8 - symbol:DDX50 "Uncharacterized protein"... 725 5.9e-74 2
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"... 727 7.6e-74 2
UNIPROTKB|Q9BQ39 - symbol:DDX50 "ATP-dependent RNA helica... 724 7.6e-74 2
MGI|MGI:2182303 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) bo... 725 1.2e-73 2
TAIR|locus:2167903 - symbol:PRH75 species:3702 "Arabidops... 722 1.2e-73 2
UNIPROTKB|E1BW15 - symbol:DDX50 "Uncharacterized protein"... 743 1.4e-73 1
UNIPROTKB|A4FV23 - symbol:DDX21 "DDX21 protein" species:9... 720 4.1e-73 2
UNIPROTKB|F1SUG7 - symbol:DDX21 "Uncharacterized protein"... 713 1.8e-72 2
MGI|MGI:1860494 - symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) bo... 728 5.3e-72 1
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"... 727 6.7e-72 1
RGD|1307306 - symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box he... 725 1.1e-71 1
UNIPROTKB|F1LX16 - symbol:F1LX16 "Uncharacterized protein... 718 6.1e-71 1
GENEDB_PFALCIPARUM|PFE0215w - symbol:PFE0215w "ATP-depend... 594 6.8e-71 2
UNIPROTKB|Q8I457 - symbol:PFE0215w "ATP-dependent helicas... 594 6.8e-71 2
UNIPROTKB|E2QTL6 - symbol:DDX21 "Uncharacterized protein"... 706 1.1e-69 1
UNIPROTKB|F6V8G4 - symbol:DDX21 "Uncharacterized protein"... 706 1.1e-69 1
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel... 669 9.4e-66 1
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he... 669 9.4e-66 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 661 6.7e-65 1
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 607 6.9e-63 2
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 631 1.0e-61 1
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote... 623 7.1e-61 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 620 1.5e-60 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 616 3.9e-60 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 581 6.1e-60 2
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 609 2.2e-59 1
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote... 609 2.2e-59 1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 608 2.7e-59 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 608 2.7e-59 1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 608 2.7e-59 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 608 2.7e-59 1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 608 2.7e-59 1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 608 2.7e-59 1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 608 2.7e-59 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 607 3.5e-59 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 606 4.5e-59 1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 605 5.7e-59 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 572 6.9e-59 2
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 572 6.9e-59 2
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 572 6.9e-59 2
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 572 6.9e-59 2
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 572 6.9e-59 2
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 572 6.9e-59 2
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 572 6.9e-59 2
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 604 7.3e-59 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 571 8.8e-59 2
TIGR_CMR|CPS_1726 - symbol:CPS_1726 "RNA helicase DeaD" s... 603 9.3e-59 1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 602 1.2e-58 1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 601 1.5e-58 1
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 601 1.5e-58 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 568 1.8e-58 2
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 599 2.5e-58 1
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 587 3.6e-58 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 596 5.1e-58 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 568 9.9e-58 2
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 592 1.4e-57 1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 589 2.8e-57 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 588 3.6e-57 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 585 7.5e-57 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 557 1.1e-56 2
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 583 1.2e-56 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 583 1.2e-56 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 583 1.2e-56 1
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN... 583 1.2e-56 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 583 1.2e-56 1
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer... 582 1.6e-56 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 559 2.9e-56 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 579 3.3e-56 1
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b... 550 3.8e-56 2
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 440 4.8e-56 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 577 5.3e-56 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 577 5.3e-56 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 577 5.3e-56 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 577 5.3e-56 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 576 6.8e-56 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 576 6.8e-56 1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 575 8.6e-56 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 575 8.6e-56 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 575 8.6e-56 1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 574 1.1e-55 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 574 1.1e-55 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 573 1.4e-55 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 577 2.6e-55 1
TIGR_CMR|SPO_3833 - symbol:SPO_3833 "ATP-dependent RNA he... 570 2.9e-55 1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 545 4.2e-55 2
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 568 4.8e-55 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 568 4.8e-55 1
WB|WBGene00002083 - symbol:inf-1 species:6239 "Caenorhabd... 567 6.1e-55 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 566 7.8e-55 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 544 8.8e-55 2
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 565 9.9e-55 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 564 1.3e-54 1
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli... 563 1.6e-54 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 540 1.8e-54 2
WARNING: Descriptions of 805 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 1652 (586.6 bits), Expect = 4.4e-176, Sum P(3) = 4.4e-176
Identities = 345/508 (67%), Positives = 394/508 (77%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAK---SGPVIPRHDDIIKSRFSAG 58
M + +L+RS SKR L+A+LTS+ T+L +LA A S + D+ K+ F G
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLAPAATRVSDLALIGSSDV-KAGFPFG 58
Query: 59 T--REFHAISRPLDFKSSIAWQHAQSAVDDY----VAYDDSSKDEGLDISKLDISQDIVA 112
+ H S PLDF++S+ Q A A+ + V +S +GL IS+L IS +IV
Sbjct: 59 VEAKGIHFQSGPLDFRASMVSQ-AGFAISESSERRVGDSESVGGDGLAISELGISPEIVK 117
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHGRGR
Sbjct: 118 ALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGR 177
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
NPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTPGRV
Sbjct: 178 NPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRV 237
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP WIRS
Sbjct: 238 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRS 297
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352
LT KYL NPLTVDLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIVFTQ
Sbjct: 298 LTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQ 357
Query: 353 TKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
TKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDVPNV
Sbjct: 358 TKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNV 417
Query: 413 DLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472
DLIIHYELPN +ETFVH SAILIY+ Q+R VK IER+VG RFT+LP I
Sbjct: 418 DLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSI 477
Query: 473 AVE-GGGDMYNDMGGRSGY---GSMRDR 496
AVE G M+ +G RSG G MRDR
Sbjct: 478 AVERGSASMFEGIGSRSGGSFGGGMRDR 505
Score = 53 (23.7 bits), Expect = 4.4e-176, Sum P(3) = 4.4e-176
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 572 TKSDRSSAFGDTGSRQS----GR--FGDLGDN 597
+ ++RSS FGD GS +S GR FG G N
Sbjct: 579 SSNNRSSGFGDFGSDRSSQSGGRSSFGGFGSN 610
Score = 43 (20.2 bits), Expect = 4.4e-176, Sum P(3) = 4.4e-176
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 475 EG-GGDMYNDMGGRSGYGSMR 494
EG G D + GGRS +G R
Sbjct: 555 EGYGSDRSSQSGGRSSFGGGR 575
Score = 43 (20.2 bits), Expect = 1.0e-174, Sum P(3) = 1.0e-174
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 570 ESTKSDRSSAFGDTGSRQSGRFGDLGDN 597
E SDRSS G S GR G +N
Sbjct: 555 EGYGSDRSSQSGGRSSFGGGRSGGSSNN 582
Score = 40 (19.1 bits), Expect = 9.1e-176, Sum P(3) = 9.1e-176
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 476 GGG--DMYNDMGGRSGYG 491
GGG D + GGRSG G
Sbjct: 499 GGGMRDRGSSFGGRSGGG 516
Score = 40 (19.1 bits), Expect = 9.1e-176, Sum P(3) = 9.1e-176
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 476 GGGDMYNDMGGRSGYGSMRDRQYADTGFD 504
G + Y+ RSG+GS R G D
Sbjct: 532 GSSNRYSGDSDRSGFGSFGMRSPEGYGSD 560
Score = 39 (18.8 bits), Expect = 1.3e-174, Sum P(3) = 1.3e-174
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 581 GDTGSRQSGRFGDLGDN 597
G + +R SG FGD G +
Sbjct: 578 GSSNNRSSG-FGDFGSD 593
Score = 39 (18.8 bits), Expect = 9.8e-172, Sum P(2) = 9.8e-172
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 477 GGDMYNDMGGRSGYG 491
G D + GGRS +G
Sbjct: 591 GSDRSSQSGGRSSFG 605
Score = 38 (18.4 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 577 SSAFGDTGSRQSGRFG 592
+S F GSR G FG
Sbjct: 484 ASMFEGIGSRSGGSFG 499
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 1551 (551.0 bits), Expect = 3.8e-173, Sum P(4) = 3.8e-173
Identities = 313/453 (69%), Positives = 353/453 (77%)
Query: 53 SRFSAGTREFHAISRPLDFKSSI-------AWQHAQS-----AVDDYVAYDDSSKDEGLD 100
S F R+FH S P +F+SSI A ++A S + D + S +GL
Sbjct: 58 SPFGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLA 117
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 118 IADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 177
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
IIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+Y
Sbjct: 178 IIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNY 237
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSM
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM 297
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA Y + SIIG L+ E
Sbjct: 298 MFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKE 357
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
H KGGKCIVFTQTKRDADRLA +AKSY CE LHGDISQ+QRERTL+ FRDG F+IL+AT
Sbjct: 358 HGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVAT 417
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIER 460
DVAARGLDVPNVDL+IHYELPN +ETFVH SAILI+ Q R VK IE+
Sbjct: 418 DVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEK 477
Query: 461 DVGCRFTQLPRIAVE-GGGDMYNDMGGRSGYGS 492
+VG RF +LP IAVE G M+ +G RSG GS
Sbjct: 478 EVGSRFNELPSIAVERGSASMFEGVGARSG-GS 509
Score = 1509 (536.3 bits), Expect = 1.0e-168, Sum P(4) = 1.0e-168
Identities = 300/422 (71%), Positives = 335/422 (79%)
Query: 84 VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
+ D + S +GL I+ L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRA
Sbjct: 101 IGDSESVGSSGGGDGLAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRA 160
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
RTGTGKTLAFGIPI+DKIIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTI
Sbjct: 161 RTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTI 220
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
C+YGGTPI QMR L+YG+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFA
Sbjct: 221 CLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 280
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
EDVE+IL++LP RQSMMFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSI
Sbjct: 281 EDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSI 340
Query: 324 ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRE 383
A Y + SIIG L+ EH KGGKCIVFTQTKRDADRLA +AKSY CE LHGDISQ+QRE
Sbjct: 341 AADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRE 400
Query: 384 RTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSA 443
RTL+ FRDG F+IL+ATDVAARGLDVPNVDL+IHYELPN +ETFVH SA
Sbjct: 401 RTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSA 460
Query: 444 ILIYTDQQARQVKSIERDVGCRFTQLPRIAVE-GGGDMYNDMGGRSG------------Y 490
ILI+ Q R VK IE++VG RF +LP IAVE G M+ +G RSG Y
Sbjct: 461 ILIHGQDQTRAVKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSGGSFGGGRSGGGGY 520
Query: 491 GS 492
GS
Sbjct: 521 GS 522
Score = 88 (36.0 bits), Expect = 3.8e-173, Sum P(4) = 3.8e-173
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLA-AAKSGPVIPRHDDIIKSR------ 54
M S +L+RS TS+R L A++TS+ L +LA AA + + +KS
Sbjct: 1 MISTVLRRSI-LGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSSP 59
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYV-AYDD 92
F R+FH S P +F+SSI A A +Y +Y++
Sbjct: 60 FGVKVRDFHVKSVPSEFRSSIV-SSAGFAAQEYAPSYEN 97
Score = 52 (23.4 bits), Expect = 3.8e-173, Sum P(4) = 3.8e-173
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 574 SDRSSAFGDTGSR-QSGRFG 592
SDRSS FG GS SG FG
Sbjct: 566 SDRSSGFGSFGSGGSSGGFG 585
Score = 41 (19.5 bits), Expect = 3.8e-173, Sum P(4) = 3.8e-173
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 476 GGGDMYNDMGGRSGYGS 492
GG Y GRSG GS
Sbjct: 518 GGYGSYGSSSGRSGGGS 534
Score = 41 (19.5 bits), Expect = 3.8e-173, Sum P(4) = 3.8e-173
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 476 GGGDMYNDMGGRSG-YGSMRDR 496
GGG Y GG S Y DR
Sbjct: 547 GGGGSYGGSGGSSSRYSGGSDR 568
Score = 39 (18.8 bits), Expect = 6.2e-173, Sum P(4) = 6.2e-173
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 477 GGDMYNDMGGRSGYGSMRDRQYADTG 502
GG Y GG SG Y +G
Sbjct: 531 GGGSYGGYGGSSGRSGGGGGSYGGSG 556
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 1160 (413.4 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 240/413 (58%), Positives = 297/413 (71%)
Query: 64 AISRPLDFKSSIAWQH-AQSAVDDYVAYDDSSK---DEG--LDISKLDISQDIVAALARR 117
A++ P S A++ S D+Y D++ D+G L ISKL + Q + +L +R
Sbjct: 61 AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR 120
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRN 173
GI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+I
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRII 240
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DLI+ +L L EV+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L
Sbjct: 241 DLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKL 300
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT 353
KYL NPL +DLVGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQT
Sbjct: 301 ARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQT 360
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KRDAD ++ A++ S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVD
Sbjct: 361 KRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVD 420
Query: 414 LIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRF 466
L+IHYELPN ETFVH SAIL++T Q R V+S+ERDVGC F
Sbjct: 421 LVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHF 473
Score = 46 (21.3 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 465 RFTQLPRIAVEGGGDMYNDMGGRSGYGSMRD 495
RF+ R+ GGG GGR G RD
Sbjct: 643 RFSSRDRMP-RGGGGSRGSRGGRGGSSRGRD 672
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 741 (265.9 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 156/380 (41%), Positives = 228/380 (60%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS + + L RG+S LF IQ G+D+IG+ARTGTGKT +F +P
Sbjct: 165 EGA-FSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVP 223
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++K+ +++ RGR P LVLAPTRELA QV K+F + L C YGG+ + Q+
Sbjct: 224 LVEKLQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRKLSVTCFYGGSSYNPQID 283
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER---- 272
A+ G+D +VGTPGR+ D ++ N L+LS++Q VVLDE DQML +GFAE VE IL
Sbjct: 284 AIRSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKK 343
Query: 273 -LPQNRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q Q+++FSAT P W+ + KY+++ + VDL+G QK A + +IA ++
Sbjct: 344 DAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQR 403
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
S+IG +I ++ G+ IVF +TK++A L+ + + + LHGDI Q QRE TL F
Sbjct: 404 ASVIGDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQSAQSLHGDIPQKQREVTLKGF 463
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I PN E+++H I Y
Sbjct: 464 RNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQR 523
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q+K +E+ G F ++
Sbjct: 524 KEESQLKFVEQKAGITFKRV 543
Score = 37 (18.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 482 NDMGGRSGYGSMRDRQYADTGF 503
N G RSG+G+ R + +GF
Sbjct: 718 NRSGNRSGFGN-RGGRGRSSGF 738
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 726 (260.6 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 151/380 (39%), Positives = 225/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 136 EGA-FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 194
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 195 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRKLSVACFYGGTSYQSQIN 254
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL
Sbjct: 255 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKT 314
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++
Sbjct: 315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQR 374
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL F
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGF 434
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H I Y
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q++ +E+ G F ++
Sbjct: 495 RERGQLRYVEQKAGITFKRV 514
Score = 43 (20.2 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 573 KSDRSSAFGD-TGSRQSGR 590
+S R S G TGSRQ GR
Sbjct: 700 RSGRQSRQGSRTGSRQDGR 718
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 724 (259.9 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 154/404 (38%), Positives = 232/404 (57%)
Query: 73 SSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
S A + + S ++ + + EG S IS++ + L RG++ LFPIQ
Sbjct: 164 SEAASEESNSEIEQEIPVEQK---EGA-FSNFPISEETIKLLKGRGVTFLFPIQAKTFHH 219
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192
G+D+I +ARTGTGKT +F IP+++K+ + RGR P LVLAPTRELA QV K+
Sbjct: 220 VYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKD 279
Query: 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
F + L C YGGTP Q + G+D +VGTPGR+ D I+ L+L++++ VVLD
Sbjct: 280 FSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLD 339
Query: 253 EADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDL 306
E DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+ VDL
Sbjct: 340 EVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL 399
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA 365
+G QK A + +I ++ ++IG +I ++ G+ I+F +TK++A L+ A
Sbjct: 400 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 459
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425
+ + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDL+I P E
Sbjct: 460 IKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 519
Query: 426 TFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQL 469
+++H I Y ++ Q+ +E+ G +F ++
Sbjct: 520 SYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRI 563
Score = 43 (20.2 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 485 GGRSGYGSMRDRQYADTGF 503
G R GYG R ++ GF
Sbjct: 716 GPREGYGGFRGQREGSRGF 734
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 725 (260.3 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 150/380 (39%), Positives = 225/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 136 EGA-FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 194
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 195 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVACFYGGTSYQSQIN 254
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 255 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 314
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++
Sbjct: 315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQR 374
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL F
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGF 434
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H I Y
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q++ +E+ G F ++
Sbjct: 495 RERGQLRYVEQKAGITFKRV 514
Score = 40 (19.1 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 574 SDRSSAFGDTGSRQSGRFG 592
S RS G +G R GR G
Sbjct: 684 SGRSGRSGRSGGRSGGRAG 702
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 727 (261.0 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 151/380 (39%), Positives = 225/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 137 EGA-FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 195
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 196 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 255
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 315
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++
Sbjct: 316 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQR 375
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL F
Sbjct: 376 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGF 435
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H I Y
Sbjct: 436 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 495
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q++ +E+ G F ++
Sbjct: 496 RERGQLRYVEQKAGITFKRV 515
Score = 37 (18.1 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 574 SDRSSAFGDTGSRQSGRFG 592
S R+ G +G R GR G
Sbjct: 685 SGRAGRSGRSGGRSGGRSG 703
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 724 (259.9 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 150/380 (39%), Positives = 225/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 136 EGA-FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 194
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 195 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 254
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 255 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 314
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++
Sbjct: 315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQR 374
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL F
Sbjct: 375 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGF 434
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H I Y
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q++ +E+ G F ++
Sbjct: 495 RERGQLRYVEQKAGITFKRV 514
Score = 40 (19.1 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 574 SDRSSAFGDTGSRQSGRFG 592
S RS G +G R GR G
Sbjct: 684 SGRSGRSGRSGGRSGGRSG 702
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 725 (260.3 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 149/380 (39%), Positives = 225/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 133 EGA-FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 191
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 192 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 251
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 252 QIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 311
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++
Sbjct: 312 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQR 371
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL F
Sbjct: 372 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGF 431
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H + Y
Sbjct: 432 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQP 491
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q++ +E+ G F ++
Sbjct: 492 RERGQLRYVEQKAGITFKRV 511
Score = 37 (18.1 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 576 RSSAFGDTGSRQSGRFG 592
RS G +G R GR G
Sbjct: 683 RSGRSGRSGGRSGGRSG 699
>TAIR|locus:2167903 [details] [associations]
symbol:PRH75 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
Length = 671
Score = 722 (259.2 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 168/422 (39%), Positives = 246/422 (58%)
Query: 70 DFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAV 129
+ KS + + +S+ + +D D +SK IS + L GI LFPIQ +
Sbjct: 67 EVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQAST 126
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTREL 185
+ + G D++GRARTG GKTLAF +PIL+ ++ K K G GR+P LVL PTREL
Sbjct: 127 FDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTREL 186
Query: 186 AKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL 243
AKQV +F SL + C+YGG Q L GVD VVGTPGR+ D I+R L+
Sbjct: 187 AKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDF 246
Query: 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-N 300
S +QF VLDEAD+ML +GF EDVE+IL ++ + Q+++FSAT+P W+++++N++LK +
Sbjct: 247 SYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRD 306
Query: 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL 360
T+DLVG+ K ++ + +I + +I +I+ ++ GG+ I+F +TK L
Sbjct: 307 QKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSEL 366
Query: 361 AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL 420
+ + S LHG+I QSQRE TL+ FR+G+F L+AT+VAARGLD+ +V LII E
Sbjct: 367 SGLLDGS---RALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEP 423
Query: 421 PNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQL--PR---IAVE 475
P E ++H A+ +Y D + V IE++ G +F L P+ IA
Sbjct: 424 PREVEAYIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARS 482
Query: 476 GG 477
GG
Sbjct: 483 GG 484
Score = 40 (19.1 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 476 GGGDMYNDMGGRSGYGSM-RDRQY 498
GGG+ + GGR GS R ++Y
Sbjct: 648 GGGNRFGGGGGRGRGGSGGRGQRY 671
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 154/380 (40%), Positives = 228/380 (60%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS+ + L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP
Sbjct: 112 EGA-FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIP 170
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++K+ +++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+
Sbjct: 171 LIEKLQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQID 230
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
+ G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 231 LIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKK 290
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++
Sbjct: 291 DSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQR 350
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
++IG +I ++ G+ IVF +TK+DA+ LA + +C+ LHGDI Q QRE TL F
Sbjct: 351 AAVIGDVIQVYSGSYGRTIVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGF 410
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL++ P E+++H I Y
Sbjct: 411 RNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQR 470
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q++ +E G F ++
Sbjct: 471 KEENQLRYVEVKAGITFKRV 490
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 720 (258.5 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 148/380 (38%), Positives = 226/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP
Sbjct: 186 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 244
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++K++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+
Sbjct: 245 LVEKLLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIE 304
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
+ G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 305 RMKNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKK 364
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++
Sbjct: 365 DSEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQR 424
Query: 331 PSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
++IG +I ++ G+ I+F +TK++A L+ +A + + LHGDI Q QRE TL F
Sbjct: 425 AAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITLKGF 484
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL++ P E+++H I Y
Sbjct: 485 RNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQH 544
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q+ +E+ G +F ++
Sbjct: 545 KEEYQLAQVEQKAGIKFKRI 564
Score = 37 (18.1 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 485 GGRSGYGSMRDRQYADTGF 503
G R GY + R ++ + GF
Sbjct: 717 GPREGYRNFRGQREGNRGF 735
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 713 (256.0 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 149/380 (39%), Positives = 225/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP
Sbjct: 257 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 315
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++K+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+
Sbjct: 316 LIEKLQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQID 375
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
+ G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 376 RMRNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKK 435
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++
Sbjct: 436 DSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQR 495
Query: 331 PSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
++IG +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL F
Sbjct: 496 AAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGF 555
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL++ P E+++H I Y
Sbjct: 556 RNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQH 615
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q+ +E+ G +F ++
Sbjct: 616 KEEYQLTLVEQKAGIKFKRI 635
Score = 38 (18.4 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 485 GGRSGYGSMRDRQYADTGF 503
G R GY S R ++ GF
Sbjct: 788 GPREGYRSFRGQREGGRGF 806
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 155/412 (37%), Positives = 238/412 (57%)
Query: 65 ISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFP 124
+S+P + KS+ + + + + + EG S IS++ V L RG++ LFP
Sbjct: 225 LSQPSEPKSNSSDAPGEESSSETEKEIPVEQKEGA-FSNFPISEETVKLLKARGVNFLFP 283
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
IQ G+D+I +ARTGTGKT +F IP+++K+ ++ RGR P LVLAPTRE
Sbjct: 284 IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRE 343
Query: 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLS 244
LA QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L+
Sbjct: 344 LANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLT 403
Query: 245 EVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
+++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K
Sbjct: 404 KLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMK 463
Query: 300 NPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDA 357
+ VDL+G QK A + +I E+ ++IG +I ++ G+ I+F +TK+DA
Sbjct: 464 STYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDA 523
Query: 358 DRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417
L+ + + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDL++
Sbjct: 524 QELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQ 583
Query: 418 YELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQL 469
P E+++H I Y +++ Q+ +E+ G +F ++
Sbjct: 584 SCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRI 635
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 151/380 (39%), Positives = 225/380 (59%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 138 EGA-FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 196
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 197 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 256
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 257 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 316
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++
Sbjct: 317 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQR 376
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL F
Sbjct: 377 PAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGF 436
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H I Y
Sbjct: 437 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 496
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q++ +E+ G F ++
Sbjct: 497 RERGQLRYVEQKAGITFKRV 516
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 156/414 (37%), Positives = 235/414 (56%)
Query: 63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
+ +S P SS +S + + + EG S IS++ V L RG++ L
Sbjct: 150 NGLSHPKPDSSSTQAPGEESETEKEIPVEQK---EGA-FSNFPISEETVKLLKARGVNFL 205
Query: 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
FPIQ G+D+I +ARTGTGKT +F IP+++K+ ++ RGR P LVLAPT
Sbjct: 206 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPT 265
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELA QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+
Sbjct: 266 RELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD 325
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
L++++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY
Sbjct: 326 LTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKY 385
Query: 298 LKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKR 355
+K+ VDL+G QK A + +I E+ ++IG +I ++ G+ I+F +TK+
Sbjct: 386 MKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKK 445
Query: 356 DADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415
DA L+ + + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDL+
Sbjct: 446 DAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLV 505
Query: 416 IHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQL 469
+ P E+++H I Y ++ Q+ +E+ G +F ++
Sbjct: 506 VQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRI 559
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 155/414 (37%), Positives = 234/414 (56%)
Query: 63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
+ +S P SS +S + + + EG S IS++ V L RG++ L
Sbjct: 34 NGLSHPKPDSSSTQAPGEESETEKEIPVEQK---EGA-FSNFPISEETVKLLKARGVNFL 89
Query: 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
FPIQ G+D+I +ARTGTGKT +F IP+++K+ ++ RGR P LVLAPT
Sbjct: 90 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPT 149
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELA QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+
Sbjct: 150 RELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD 209
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
L++++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY
Sbjct: 210 LTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKY 269
Query: 298 LKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKR 355
+K+ VDL+G QK A + +I E+ ++IG +I ++ G+ I+F +TK+
Sbjct: 270 MKSTYKQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKK 329
Query: 356 DADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415
DA L+ + + LHGDI Q QRE TL FR+ F +L+AT+VAARGLD+P VDL+
Sbjct: 330 DAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNDNFGVLVATNVAARGLDIPEVDLV 389
Query: 416 IHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQL 469
+ P E+++H I Y ++ Q+ +E+ G +F ++
Sbjct: 390 VQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRI 443
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 594 (214.2 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 124/308 (40%), Positives = 193/308 (62%)
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222
N +H + +P LVL PTREL+KQVE F E + + + + +YGG ++Q L G+
Sbjct: 251 NREHNK--DPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGI 308
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMM 281
D + GTPGR+ID I++ L+L +++VVLDEAD+ML++GF D+E IL + + Q ++
Sbjct: 309 DILTGTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLL 368
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT--SMYEKPSIIGQLIT 339
+SAT P WI+ +++KYLKNP +D+V DS K A I +I T + EK ++ +I
Sbjct: 369 YSATTPSWIKDISSKYLKNPFCIDVV-DSSNKTAKNIKHIAIKTPYDIKEKALLLEDIIL 427
Query: 340 EHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ GG+ I+FT+TK +AD L + KS + LHG+I+QS RE T+ FR G F ILI
Sbjct: 428 VKSNGGQVIIFTRTKLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILI 487
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
ATD+A+RGLD+ NVDL+I PN S ++H +++++Y+++ + + I
Sbjct: 488 ATDIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKI 547
Query: 459 ERDVGCRF 466
E++ G +F
Sbjct: 548 EKNCGIKF 555
Score = 142 (55.0 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 85 DDYVAY-DDSSKDEGLDISKLDISQDIVAALA-RRGISKLFPIQKAVLEPAMQGRDMIGR 142
DD ++ +D K + D+S +I+++IV L ++GI + IQ +P +G+D+IGR
Sbjct: 129 DDSESHLNDQGKCKFSDLS--EINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGR 186
Query: 143 ARTGTGKTLAFGIPILDKIIKF---NEK 167
+ TG+GKTLAF +P+++K+ K NEK
Sbjct: 187 SETGSGKTLAFALPLVEKLYKMKTSNEK 214
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 594 (214.2 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 124/308 (40%), Positives = 193/308 (62%)
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222
N +H + +P LVL PTREL+KQVE F E + + + + +YGG ++Q L G+
Sbjct: 251 NREHNK--DPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGI 308
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMM 281
D + GTPGR+ID I++ L+L +++VVLDEAD+ML++GF D+E IL + + Q ++
Sbjct: 309 DILTGTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLL 368
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT--SMYEKPSIIGQLIT 339
+SAT P WI+ +++KYLKNP +D+V DS K A I +I T + EK ++ +I
Sbjct: 369 YSATTPSWIKDISSKYLKNPFCIDVV-DSSNKTAKNIKHIAIKTPYDIKEKALLLEDIIL 427
Query: 340 EHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ GG+ I+FT+TK +AD L + KS + LHG+I+QS RE T+ FR G F ILI
Sbjct: 428 VKSNGGQVIIFTRTKLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILI 487
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
ATD+A+RGLD+ NVDL+I PN S ++H +++++Y+++ + + I
Sbjct: 488 ATDIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKI 547
Query: 459 ERDVGCRF 466
E++ G +F
Sbjct: 548 EKNCGIKF 555
Score = 142 (55.0 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 85 DDYVAY-DDSSKDEGLDISKLDISQDIVAALA-RRGISKLFPIQKAVLEPAMQGRDMIGR 142
DD ++ +D K + D+S +I+++IV L ++GI + IQ +P +G+D+IGR
Sbjct: 129 DDSESHLNDQGKCKFSDLS--EINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGR 186
Query: 143 ARTGTGKTLAFGIPILDKIIKF---NEK 167
+ TG+GKTLAF +P+++K+ K NEK
Sbjct: 187 SETGSGKTLAFALPLVEKLYKMKTSNEK 214
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 148/380 (38%), Positives = 224/380 (58%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP
Sbjct: 187 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIP 245
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
++ K+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+
Sbjct: 246 LIVKLQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIE 305
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
+ G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 306 RMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKK 365
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++
Sbjct: 366 DSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQR 425
Query: 331 PSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
++IG +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL F
Sbjct: 426 AAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREITLKGF 485
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H I Y
Sbjct: 486 RNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQH 545
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q+ +E+ G +F ++
Sbjct: 546 KEEYQLAQVEQKAGIKFKRI 565
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 148/380 (38%), Positives = 224/380 (58%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP
Sbjct: 187 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIP 245
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
++ K+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+
Sbjct: 246 LIVKLQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIE 305
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
+ G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 306 RMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKK 365
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++
Sbjct: 366 DSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQR 425
Query: 331 PSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
++IG +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL F
Sbjct: 426 AAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREITLKGF 485
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R+G F +L+AT+VAARGLD+P VDL+I P E+++H I Y
Sbjct: 486 RNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQH 545
Query: 450 QQARQVKSIERDVGCRFTQL 469
++ Q+ +E+ G +F ++
Sbjct: 546 KEEYQLAQVEQKAGIKFKRI 565
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 148/370 (40%), Positives = 220/370 (59%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++H AIL+
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 373 QIRMLRTIER 382
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 148/370 (40%), Positives = 220/370 (59%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++H AIL+
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 373 QIRMLRTIER 382
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 146/381 (38%), Positives = 220/381 (57%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S DE +L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF
Sbjct: 2 SSDERT-FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF 60
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTP 210
+P+L+K+ P LVLAPTRELA QV + F A + + +YGG
Sbjct: 61 ALPLLNKVTSQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQS 113
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
+ Q+ AL G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E IL
Sbjct: 114 MQQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWIL 173
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
E P RQ +FSATMP I+ + NK+LKN + + + D I + S + K
Sbjct: 174 EHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIA--ASHTTVDSIEQRFVQVSQHNK 231
Query: 331 -PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
+++ L E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER +
Sbjct: 232 LEALVRVLEVENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQ 289
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYT 448
++G+ +ILIATDVAARGLDV + +++Y++P +E +VH AIL T
Sbjct: 290 LKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVT 349
Query: 449 DQQARQVKSIERDVGCRFTQL 469
++ R +++IER R + +
Sbjct: 350 SREMRMLRTIERATNSRISPM 370
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 607 (218.7 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 139/396 (35%), Positives = 220/396 (55%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
G S PIQ AMQ RD++ A+TG+GKTL + IP + + + G P L
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG--PTIL 305
Query: 178 VLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
VL+PTRELA Q++ E F +S+ + C+YGG P Q++ ++ GVD VV TPGR+ D
Sbjct: 306 VLSPTRELATQIQVEALKFGKSS-KISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294
+++ ++L +V ++VLDEAD+ML +GF + I+ +P RQ++M++AT P +R +
Sbjct: 365 ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA 424
Query: 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIGQLITEHAKGGKCIVFTQT 353
L NP V+ +G+ D+ +A+ +I + EK S + Q++ G K I+F T
Sbjct: 425 ADLLVNPAQVN-IGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCST 483
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KR D+LA + +++ +HGD SQ++R+ L+ FR GR +L+ATDVAARGLDV ++
Sbjct: 484 KRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIR 543
Query: 414 LIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDV-GCRFTQLPRI 472
++++Y+ PN E +VH A + DQ A+ + + + G P++
Sbjct: 544 VVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQV 603
Query: 473 ---AVEGGGDM--YNDMGGRSGYGSMRDRQYADTGF 503
A GGG M + G S G Y D+G+
Sbjct: 604 REMATRGGGGMNKFRRWGTPSSGGGGGRGGYGDSGY 639
Score = 53 (23.7 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 476 GGGDMYNDMG----GRSGYGSMRDRQYADTG 502
GG Y D G G SGYGS D Y G
Sbjct: 629 GGRGGYGDSGYGGRGESGYGSRGDSGYGGRG 659
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 141/361 (39%), Positives = 213/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 6 ELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV- 64
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
N K+ + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 --NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ++
Sbjct: 120 HPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P V + + + I Y + +K I+ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+A
Sbjct: 238 QAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+ T ++ Q+ IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 141/370 (38%), Positives = 217/370 (58%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 11 LELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDP 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 71 SK------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ++
Sbjct: 125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT+P IR++ ++LK+P V + S + I + +K S + L+ E
Sbjct: 185 LFSATLPQSIRAIAERHLKDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL-E 241
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I++A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLDVP + + + ++P E++VH A+L+ T ++ R ++ IE
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361
Query: 460 RDVGCRFTQL 469
R G + ++
Sbjct: 362 RVTGQKVAEV 371
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 135/384 (35%), Positives = 222/384 (57%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L +S DI+ A+A +G + PIQ+ + ++GRD++ A+TGTGKT F +P+L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQM 215
+I + H +GR P+ L+L PTRELA Q+ + + + L+ ++ V+GG I+ QM
Sbjct: 61 QHLIT-RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L GVD +V TPGR++DL +NA+ L +V+ +VLDEAD+ML +GF D+ +L +LP
Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSAT I++L K L NPL +++ + +D ++ + K ++
Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA--SDQVTQHVHFVDKKRKRELLS 237
Query: 336 QLITEHAKGG--KCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG 392
+I KG + +VFT+TK A+ LA + K +HG+ SQ R R L+ F+ G
Sbjct: 238 HMI---GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG 294
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQA 452
+L+ATD+AARGLD+ + +++YELPN E +VH A+ + +
Sbjct: 295 DIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354
Query: 453 RQVKSIERDVGCRFTQLPRIAVEG 476
+ ++ IE+ + ++PRIA+ G
Sbjct: 355 KLLRDIEKLLK---KEIPRIAIPG 375
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 139/381 (36%), Positives = 214/381 (56%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D + +A G PIQ + M GRD++G A+TGTGKT AF +PIL
Sbjct: 1 MDFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
++ + E+ GR R LV+APTRELA+Q+ F L ++ VYGG ++ Q++
Sbjct: 61 HRLQQ-GER-GRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQ 115
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G + VV PGR++D I + ++LS ++ +VLDEADQM +GF D+ +L+ LP
Sbjct: 116 KLKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPR 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP IR+L L +P+TV VG + +LY + + K ++ +
Sbjct: 176 RQTLLFSATMPIDIRTLAQDILVDPVTVQ-VGTVAPAVTVAHALYPVEQHL--KTPLLLE 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ H ++FT+TK A RL + K+ Y L G++SQ++R+ L FRDG F
Sbjct: 233 LL-RHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQ 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
IL+ATD+AARG+DV V +I+Y++P+T+E ++H A + T V
Sbjct: 292 ILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMV 351
Query: 456 KSIERDVGCRFTQLPRIAVEG 476
++IER +G + R V+G
Sbjct: 352 RAIERSLGA---PIERRTVQG 369
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 581 (209.6 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 137/392 (34%), Positives = 220/392 (56%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ + ++G +K IQ AM GRD++G A+TG+GKTLA+ +P + I +
Sbjct: 168 VMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINN-QPRLE 226
Query: 170 RGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
RG P+ LVLAPTRELA+Q+++ EF + +T C++GG P Q R L+ GV+ V+
Sbjct: 227 RGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT-CIFGGAPKGQQARDLERGVEIVI 285
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
TPGR+ID ++R +L ++VLDEAD+ML +GF + I++++ +RQ +M+SAT
Sbjct: 286 ATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATW 345
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG- 345
P +R L ++L N + V+ +G I EK + +L+T+ +
Sbjct: 346 PKEVRQLAEEFLNNYIQVN-IGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENE 404
Query: 346 -KCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
K I+F +TK+ D + +++ + +HGD SQ +R+ LS+FR+GR +IL+ATDVA
Sbjct: 405 TKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVA 464
Query: 404 ARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS---IER 460
ARGLDV +V +I+Y+ P+ SE +VH +A ++T A + + R
Sbjct: 465 ARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLR 524
Query: 461 DVGCRFT-QLPRIAVEGGGDMYNDMGGRSGYG 491
+ +L +A+ GG YN GG G G
Sbjct: 525 EANQTINPKLMNMAMNGG---YNKRGGGMGGG 553
Score = 51 (23.0 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 465 RFTQLPRIAV--EGGGDMYNDMGGRSGYGSMRDRQYADTG 502
RF Q PR + +GG Y GG GY + +Q G
Sbjct: 602 RFDQKPRTSPPNQGGQGGYRGQGG-GGYQGQQQQQQQQNG 640
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 138/361 (38%), Positives = 211/361 (58%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L +
Sbjct: 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL-- 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDY 220
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 69 ----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+ Q+
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR +T +++K P V + + D Y M + +++ L E
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR-PDISQSYWTVWGMRKNEALVRFLEAE 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +ILIA
Sbjct: 244 DFDAA--IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLDV + L+++Y++P SE++VH A+L +++ R +++IE
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Query: 460 R 460
R
Sbjct: 362 R 362
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 145/375 (38%), Positives = 217/375 (57%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L I ++ A+ G IQ A + M G D++G A+TGTGKT AF IP+L KI
Sbjct: 18 LQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI-D 76
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
K P LVL PTRELA QV + F L+ + +YGG+ + Q+ L
Sbjct: 77 ITSKV-----PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR+ID ++R L+LS V F+VLDEAD+ML++GFA+DVE IL P+ +Q
Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMPP IR L+ KYL +P V + +A+ IS I + K + +++ E
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKT--AVAENISQSYIQVA--RKMDALTRVL-E 246
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
IVF +TK+ + +A + A+ ++ + GD+ Q+QRERT++A RDG +IL+A
Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +++Y++P+ +E++VH +A++ + ++ +K+IE
Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366
Query: 460 RDVGCRFT--QLPRI 472
+ T QLP +
Sbjct: 367 KATRQTLTEAQLPTV 381
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 132/361 (36%), Positives = 215/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
E +G +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 132/361 (36%), Positives = 215/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
E +G +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 132/361 (36%), Positives = 215/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
E +G +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 132/361 (36%), Positives = 215/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
E +G +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 132/361 (36%), Positives = 215/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
E +G +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 132/361 (36%), Positives = 215/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
E +G +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 132/361 (36%), Positives = 215/361 (59%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
E +G +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VH A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 134/370 (36%), Positives = 210/370 (56%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+++ ++ A+ G PIQ + PA++GRD++G A+TGTGKT +F +P++ +
Sbjct: 5 SELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALD 219
+ R R P LVL PTRELA QV + F + L + GG Q +D
Sbjct: 65 AR---GRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALID 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD ++ TPGR++D +R L L+ VQ +V+DEAD+ML +GF D+E I P RQ+
Sbjct: 122 RGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYSIAT---SMYEKPSII 334
+ FSATM P I +TN +L P +++ + + + G+ L+ + EK +++
Sbjct: 182 LFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVL 241
Query: 335 GQLITEHAKGGKC---IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFR 390
LI A+G KC I+F K D D +A ++ K Y+ P+HGD+ QSQR RTL FR
Sbjct: 242 RALID--AEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFR 299
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
+G+ +L+A+DVAARGLDVP+V + ++++P E +VH AI + +
Sbjct: 300 EGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPR 359
Query: 451 QARQVKSIER 460
+ + +IE+
Sbjct: 360 DEKALDAIEK 369
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 136/315 (43%), Positives = 196/315 (62%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLA 180
PIQ + GRD+IG A+TG+GKTLAFGIP + ++K N+K G G NP CLVL+
Sbjct: 139 PIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLS 198
Query: 181 PTRELAKQVEKEFHESA-P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
PTRELA Q+ E+ P L +ICVYGG+ Q+ A+ GVD V+GTPGR+ DLI+
Sbjct: 199 PTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIES 258
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
N L LS+V FVVLDEAD+ML +GF E V IL + RQ +MFSAT P + L +++
Sbjct: 259 NVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFM 318
Query: 299 K-NPLTVDLVGDSDQKLA-DGISLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKR 355
NP+ V ++G D D + + + +I L H ++ + +VF K
Sbjct: 319 DPNPIKV-IIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKV 377
Query: 356 DADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414
+A+RL + + + +HG+ +QS+R R+LS F++G +L+ATDVAARGLD+P+V++
Sbjct: 378 EAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEV 437
Query: 415 IIHYELPNTSETFVH 429
+I+Y P T+E +VH
Sbjct: 438 VINYTFPLTTEDYVH 452
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 149/411 (36%), Positives = 225/411 (54%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D L ++ I+ +L + G + PIQ+ + +QGRD++G A+TGTGKTLAF PILD
Sbjct: 8 DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILD 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
++ + N R LVLAPTRELA Q+ F + + +L + V GG I Q+R
Sbjct: 68 RLSR-NASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQ 126
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G +V TPGR+IDL+++ A++L +V+ ++LDEADQML +GF + I + +P R
Sbjct: 127 LERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKR 186
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q++ FSATMP + SL +L+NP V + + A I EK S++ +
Sbjct: 187 QTLFFSATMPKAVESLAATFLRNPAEVSVAPPATT--AGRIEQRVCFVEQPEKASLLIEK 244
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I + + IVFT+TK AD + +AK+ + +HG+ SQSQRE+ L AF+ GR I
Sbjct: 245 IRD-PELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPI 303
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK 456
L+ATD+AARG+ V + +I+Y+LP+ E FVH AI + + ++
Sbjct: 304 LVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLR 363
Query: 457 SIERDVGCRFT----QLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGF 503
+IE+ G + LP + G G RSG G R + G+
Sbjct: 364 AIEKLTGLKLAPNGVSLPDEPLRKPG---KPQGNRSGNGGGRGGARSGGGY 411
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 572 (206.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 572 (206.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 151 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 209
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 210 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 267
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 268 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 327
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 328 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 385
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 386 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 445
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 446 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 505
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 506 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 548
Score = 50 (22.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 552 DRYS-AGKRGGFNTFRDRENYDRGY 575
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 572 (206.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 572 (206.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 572 (206.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 572 (206.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 572 (206.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 139/405 (34%), Positives = 220/405 (54%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ + G S PIQ AMQGRD++ A+TG+GKTL + IP + +
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDS 227
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
G P LVL+PTRELA Q+++E F S+ + C+YGG P Q+R L+ G D V
Sbjct: 228 RMG--PTILVLSPTRELATQIQEEAVKFGRSS-RISCTCLYGGAPKGPQLRDLERGADIV 284
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
V TPGR+ D+++ ++L ++ ++VLDEAD+ML +GF + I++ +P RQ++M++AT
Sbjct: 285 VATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHAKG 344
P +R + L NP V+ +G+ D+ +A+ I+ + + EK + Q++ G
Sbjct: 345 WPKGVRKIAADLLVNPAQVN-IGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPG 403
Query: 345 GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K I+F TKR D+L + + + +HGD SQ +R+ L+ FR GR +L+ATDVAA
Sbjct: 404 SKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAA 463
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDV-G 463
RGLDV ++ +++Y+ PN E +VH A + DQ ++ + + + G
Sbjct: 464 RGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEG 523
Query: 464 CRFTQLPRI---AVEGGGDM--YNDMGGRSG-YGSMRDRQYADTG 502
P+I A GGG M ++ G SG G D Y G
Sbjct: 524 ANQRVPPQIREMATRGGGGMNKFSRWGPPSGGRGRGGDSGYGGRG 568
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 571 (206.1 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 142/410 (34%), Positives = 227/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 131/371 (35%), Positives = 215/371 (57%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
++ E + + L + +++++A+ G + IQ + P + G+D++G A+TGTGKT AF
Sbjct: 10 TEPEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAF 69
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTP 210
G+P L KI +K P +VLAPTRELA QV + F + L +YGG
Sbjct: 70 GLPALAKIDTSIKK------PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQS 123
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q + L+ G VVGTPGR++D ++R +L L E++ VLDEAD+ML++GF ED++ IL
Sbjct: 124 YGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWIL 183
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
+ +P+ Q +FSATMPP IR + N++LK+P + + + +K I+ Y+ S K
Sbjct: 184 DHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVA--AVKKAKANITQYAWKVSGITK 241
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
+ + + I E + I+F +T+ D +A + ++ Y L+GD++Q+QRER +
Sbjct: 242 MTAL-ERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQM 300
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
+ G+ +IL+ATDV ARGLD+P + L+I+Y+LP +E +VH +I
Sbjct: 301 KSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRP 360
Query: 450 QQARQVKSIER 460
++ ++ ER
Sbjct: 361 REMYSIRHYER 371
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 135/370 (36%), Positives = 217/370 (58%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S+ +V A+ G ++ P+Q+ + +QGRD++ A+TGTGKT F +PIL
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 159 DKIIKF-----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI--CVYGGTPI 211
+++ +++HG R P LVL PTRELA QV + F A L + C++GG +
Sbjct: 61 ERLFPNGVPDKSQRHGP-RQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGM 119
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
+ Q++A+ GVD +V PGR++DL + +++LS V+ +VLDEAD+ML +GF DV+ +L
Sbjct: 120 NPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
RLP RQ+++FSAT I SL K L NP +++ + ++ +A + K
Sbjct: 180 RLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAAN--HKR 237
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFR 390
S++ LIT A + +VFT+TK A+RLA + K +HG+ SQ+ R + L+ F+
Sbjct: 238 SLLAHLITVGA-WEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFK 296
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G I++ATD+AARGLD+ + ++++ELPN E +VH AI +
Sbjct: 297 AGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPD 356
Query: 451 QARQVKSIER 460
+ + +KSIER
Sbjct: 357 EEKLLKSIER 366
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 141/411 (34%), Positives = 224/411 (54%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L IS+ L GI++ PIQ+ + + G+D+IG+A+TGTGKTLAF +PIL+KI
Sbjct: 9 ELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI- 67
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALD 219
+ L++APTRELA Q+ E + ++ + +YGG ++ Q+R L
Sbjct: 68 -----DPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
VV TPGR++D I+R ++LS + +VLDEADQML GF D+E IL+ P ++Q+
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSAT+P I+ L +Y+ P + + S++ D I I T+ KP + + +
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQV--QSEEVTVDTIEQRVIETTDRAKPDAL-RFVM 239
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F +TK A +L + YNC LHGDI Q++RER + +FR+ + LI
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
ATDVAARGLDV V + +Y++P E+++H AI + + ++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Query: 459 ERDVGC----RFTQLPRI--AVEGGGDMYNDMGGRSGYGSMRD-RQYADTG 502
E+ +G + P+I E G + +SG RD R+ + +G
Sbjct: 360 EKTLGAPIQREIIEQPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSG 410
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 141/411 (34%), Positives = 224/411 (54%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L IS+ L GI++ PIQ+ + + G+D+IG+A+TGTGKTLAF +PIL+KI
Sbjct: 9 ELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI- 67
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALD 219
+ L++APTRELA Q+ E + ++ + +YGG ++ Q+R L
Sbjct: 68 -----DPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
VV TPGR++D I+R ++LS + +VLDEADQML GF D+E IL+ P ++Q+
Sbjct: 123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSAT+P I+ L +Y+ P + + S++ D I I T+ KP + + +
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQV--QSEEVTVDTIEQRVIETTDRAKPDAL-RFVM 239
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F +TK A +L + YNC LHGDI Q++RER + +FR+ + LI
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
ATDVAARGLDV V + +Y++P E+++H AI + + ++ I
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Query: 459 ERDVGC----RFTQLPRI--AVEGGGDMYNDMGGRSGYGSMRD-RQYADTG 502
E+ +G + P+I E G + +SG RD R+ + +G
Sbjct: 360 EKTLGAPIQREIIEQPKIKRVDENGKPLPKPAPKKSGEYRQRDSREGSRSG 410
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 568 (205.0 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 142/410 (34%), Positives = 226/410 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSI 333
+RQ++M+SAT P +R L +LK+ + ++ +G + I + + + EK
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEK 328
Query: 334 IGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K K IVF +TKR D L M + + +HGD SQ +R L+ F+
Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFK 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ ILIATDVA+RGLDV +V +I+Y+ PN+SE ++H +A +T
Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448
Query: 451 QARQVK---SIERDVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+QV S+ R+ P++ + D G GRS G G M+D
Sbjct: 449 NIKQVSDLISVLREANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 491
Score = 50 (22.7 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 495 DRYS-AGKRGGFNTFRDRENYDRGY 518
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 134/370 (36%), Positives = 215/370 (58%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S+ +V A+ G ++ P+Q+ + +QGRD++ A+TGTGKT F +PIL
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 159 DKIIKF-----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI--CVYGGTPI 211
+++ +++HG R P LVL PTRELA QV F A L + C++GG +
Sbjct: 61 ERLFPNGHPDKSQRHGP-RQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGM 119
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
+ Q++A+ GVD +V PGR++DL + +++LS V+ +VLDEAD+ML +GF DV+ +L
Sbjct: 120 NPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
RLP RQ+++FSAT I L K L NP +++ + ++ + S K
Sbjct: 180 RLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPAS--HKR 237
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFR 390
+++ LIT A + +VFT+TK A+RLA + K + +HG+ SQ+ R + L+ F+
Sbjct: 238 ALLAHLITAGA-WEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFK 296
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G IL+ATD+AARGLD+ + ++++ELPN E +VH AI +
Sbjct: 297 AGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPD 356
Query: 451 QARQVKSIER 460
+ + +KSIER
Sbjct: 357 EEKLLKSIER 366
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 587 (211.7 bits), Expect = 3.6e-58, Sum P(2) = 3.6e-58
Identities = 137/404 (33%), Positives = 218/404 (53%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I+ L G PIQ A+Q RD++ A+TG+GKTL + IP I+ + ++
Sbjct: 445 EILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF--ILLRHCRN 502
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
P L+LAPTRELA Q++ E F S+ + C+YGG P Q++ L+ G D V
Sbjct: 503 DSRNGPTVLILAPTRELATQIQDEALRFGRSS-RISCTCLYGGAPKGPQLKELERGADIV 561
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
V TPGR+ D+++ ++ +V +VLDEAD+ML +GF + I+ +P RQ++M++AT
Sbjct: 562 VATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTAT 621
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHAKG 344
P +R + + L NP+ V+ +G D+ A+ I+ Y EK + Q++ +G
Sbjct: 622 WPKEVRKIASDLLVNPVQVN-IGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERG 680
Query: 345 GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K I+F TKR D LA ++ + + +HGD +Q +R+ L+ FR G+ +LIATDVAA
Sbjct: 681 SKVIIFCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAA 740
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGC 464
RGLD+ ++ ++I+Y+ P E +VH A +T+Q + + + +
Sbjct: 741 RGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEG 800
Query: 465 RFTQLPR----IAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFD 504
Q+P IA+ GGG GG GY +DR+ FD
Sbjct: 801 ANQQVPPQVRDIAMRGGG------GGGPGYS--QDRRGMVNRFD 836
Score = 46 (21.3 bits), Expect = 3.6e-58, Sum P(2) = 3.6e-58
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 475 EGG-GDMYNDMGGRSGYGSMRDRQYADTG 502
EGG G GGR G MRD + G
Sbjct: 868 EGGFGGREGGFGGRGGRFGMRDDSFGRGG 896
Score = 43 (20.2 bits), Expect = 7.4e-58, Sum P(2) = 7.4e-58
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 572 TKSDRSSAFGDTGSRQSGRFGDLG 595
T+ D FG G SGR G G
Sbjct: 842 TRWDSGGGFGGRGGGFSGREGGFG 865
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 140/422 (33%), Positives = 231/422 (54%)
Query: 81 QSAVDDYVAYDDSSKD---EGLDISK-LDISQD------IVAALARRGISKLFPIQKAVL 130
Q+ + VA + +D EG D+ K + + QD I+ A+A+ G ++ PIQ
Sbjct: 137 QAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGW 196
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
A++GRD+IG A TG+GKTLA+ +P L + + G+ P+ L+LAPTRELA Q++
Sbjct: 197 PMALKGRDLIGIAETGSGKTLAYLLPALVHV-SAQPRLGQDDGPIVLILAPTRELAVQIQ 255
Query: 191 KEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
+E + + + C+YGG P Q+R L GV+ V+ TPGR+ID+++ NL V +
Sbjct: 256 EESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTY 315
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+VLDEAD+ML +GF + I+ ++ +RQ++++SAT P + +L ++L++P ++G
Sbjct: 316 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKA-IIG 374
Query: 309 DSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS- 367
+D K I+ EK + + L+ + G K ++F +TKR D++ +
Sbjct: 375 STDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDG 434
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETF 427
+ +HGD +QS+R+R L+ F+ GR I+ ATDVAARGLDV ++ +++Y+ PNT E +
Sbjct: 435 WPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDY 494
Query: 428 VHXXXXXXXXXXXXSAILIYTDQQA---RQVKSIERDVGCRFTQLPRIAVEGGGDMYNDM 484
+H A +T A R++ I ++ G V G Y
Sbjct: 495 IHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSALVRSSGSGYGGS 554
Query: 485 GG 486
GG
Sbjct: 555 GG 556
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 136/405 (33%), Positives = 225/405 (55%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I+ A+A+ G ++ PIQ A++GRD+IG A TG+GKTLA+ +P L + +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV-SAQPRL 233
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVV 226
G+ P+ L+LAPTRELA Q+++E + + + C+YGG P Q+R L GV+ V+
Sbjct: 234 GQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVI 293
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
TPGR+ID+++ NL V ++VLDEAD+ML +GF + I+ ++ +RQ++++SAT
Sbjct: 294 ATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATW 353
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P + +L ++L++P ++G +D K I+ EK + + L+ + G K
Sbjct: 354 PREVETLARQFLRDPYKA-IIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSK 412
Query: 347 CIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
++F +TKR D++ + + +HGD +QS+R+R L+ F+ GR I+ ATDVAAR
Sbjct: 413 ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAAR 472
Query: 406 GLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQA---RQVKSIERDV 462
GLDV ++ +++Y+ PNT E ++H A +T A R++ I ++
Sbjct: 473 GLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEA 532
Query: 463 GC----RFTQLPRIAVEG-----GGDMYNDMGGR--SGYGSMRDR 496
G + L R + G GG + GG G+G R R
Sbjct: 533 GQVVPPTLSALVRSSGSGYGGSGGGRNFRPRGGGRGGGFGDKRSR 577
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 568 (205.0 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 144/397 (36%), Positives = 219/397 (55%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L ++ + IQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 104 QYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 160
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + S + + CVYGG P Q+R L+ GV+
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVE 220
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 221 ICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 280
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ + ++ +G + I L + M EK + + QL+ E
Sbjct: 281 ATWPKEVRQLAEDFLQDYVQIN-IGALELSANHNI-LQIVDVCMENEKDNKLIQLMEEIM 338
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TK+ D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 339 AEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIA 398
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T RQ
Sbjct: 399 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQA---- 454
Query: 460 RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDR 496
RD+ R + R A+ D G G G MR R
Sbjct: 455 RDL-VRVLEEARQAINPKLLQLVDTGRGGGGGRMRYR 490
Score = 43 (20.2 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 476 GGGDMYNDMGGRSGYGSMRDRQYADTG 502
GGG+ + GG G G QY G
Sbjct: 570 GGGEQFQSYGGGGGGGE----QYGSRG 592
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 131/368 (35%), Positives = 215/368 (58%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ I+ A+A G ++ P+Q A + A++ D++ A+TGTGKT AF +P L
Sbjct: 1 MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMR 216
++ + G GR P LVL PTRELA+QV + + + + + GG P Q+R
Sbjct: 61 QRLS--SPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLR 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VD +V TPGR++DL+ R +L+LS ++ +VLDEAD+ML +GF++DV+ I P
Sbjct: 119 LLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPAT 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++F+ATM + L + L+ P +D+ G L+ +A ++ K ++
Sbjct: 179 RQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLH-VADDLHHKNRLLRH 237
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LIT+ + + I+F+ TKRDA+ LA + A+ ++ LHGD+ Q+ R RT++A + GR
Sbjct: 238 LITDESLR-RAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIR 296
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
+L+ATDVAARGLDV + +I+++LP +E +VH AI + + +
Sbjct: 297 LLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYL 356
Query: 456 KSIERDVG 463
IER +G
Sbjct: 357 ARIERYIG 364
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 122/359 (33%), Positives = 207/359 (57%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + L +S+ ++ A+ +G PIQ + + GRD++ A+TGTGKT F +
Sbjct: 3 DTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISH 213
P+L ++ N L+L PTRELA Q+ + E + +L ++ V+GG I+
Sbjct: 63 PLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINP 122
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L GVD +V TPGR++DL + A+ S+++ +LDEAD+ML +GF D++ ++ L
Sbjct: 123 QIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTAL 182
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P++RQ+++FSAT P IR+L + NPL + + D++ A+ ++ + A KP++
Sbjct: 183 PKDRQNLLFSATFSPEIRALAKGMVNNPLEISV--DAENSTAEKVTQWLTAVDKKRKPAV 240
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ LI E+ + +VFT+TK A++L H A+ +HG+ SQ R + L+AF+DG
Sbjct: 241 LTHLIKEN-NWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDG 299
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI-LIYTDQ 450
IL+ATD+AARG+D+ + +++++LPN E +VH A+ L+ D+
Sbjct: 300 SVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADE 358
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 139/398 (34%), Positives = 220/398 (55%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q +++ + +G K IQ A+ GRD++G A TG+GKTL++ +P I+ N +
Sbjct: 149 QYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA---IVHINAQ 205
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
G P+ L+LAPTRELA Q++ E + S + CVYGG P Q+R L GV+
Sbjct: 206 PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVE 265
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID+++ NL V ++VLDEAD+ML +GF + I+ ++ +RQ+ M+S
Sbjct: 266 VCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWS 325
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQL--ITE 340
AT P +R L + +L N + V+ +G D I+ S +EK +I L I E
Sbjct: 326 ATWPKEVRQLASDFLNNYIQVN-IGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIME 384
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ +G KC+VFT TKR AD + + + + +HGD Q +R+ L+ F+ G+ I++A
Sbjct: 385 N-RGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVA 443
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI- 458
TDVA+RG+DV ++ +I+Y+ PN SE +VH +AI +T A+Q + +
Sbjct: 444 TDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLV 503
Query: 459 ------ERDVGCRFTQLPRIAVEGG-GDMYNDMGGRSG 489
++ + R ++ R + GG G Y GGR G
Sbjct: 504 TILSEAKQQIDPRLAEMVRYSGGGGHGGGYGRWGGRGG 541
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 148/398 (37%), Positives = 227/398 (57%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ AL + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 99 QYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 155
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 156 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 215
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 216 ICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 275
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ + ++ VG+ + I L + M EK + QL+ E
Sbjct: 276 ATWPKEVRQLAEDFLQDYVQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 333
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 334 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 393
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 394 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 453
Query: 456 KSIE---RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E + + + QL + GGG GGRS Y
Sbjct: 454 KVLEEANQAINPKLMQL--VDHRGGGG--GGGGGRSRY 487
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 557 (201.1 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 137/390 (35%), Positives = 212/390 (54%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPL 175
G K IQ A+ GRDM+G A TG+GKTL++ +P I+ N + G P+
Sbjct: 132 GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLP---GIVHINAQPLLAPGDGPI 188
Query: 176 CLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
LVLAPTRELA Q++ E F S+ +T CVYGG P S Q+R L G + V+ TPGR+
Sbjct: 189 VLVLAPTRELAVQIQTECSKFGHSSRIRNT-CVYGGVPKSQQIRDLSRGSEIVIATPGRL 247
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
ID+++ NL V ++VLDEAD+ML +GF + I++++ +RQ++M+SAT P ++
Sbjct: 248 IDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQ 307
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG--KCIVF 350
L YL +P+ V VG + + I+ S +EK + + + ++ K ++F
Sbjct: 308 LAADYLNDPIQVQ-VGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIF 366
Query: 351 TQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
TKR D + + + + +HGD Q +R+ L FR+GR I++ATDVAARG+DV
Sbjct: 367 ASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDV 426
Query: 410 PNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQ---ARQVKSIERD----V 462
++ +I+Y++P E +VH +AI +T+Q ++ SI R+ +
Sbjct: 427 KGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNI 486
Query: 463 GCRFTQLPRIAVEGGGDMYND-MGGRSGYG 491
+ R + GG Y GGR GYG
Sbjct: 487 PPELLKYDRRSYGGGHPRYGGGRGGRGGYG 516
Score = 44 (20.5 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 485 GGRSGYGSMRDR 496
GGR GYG R R
Sbjct: 523 GGRGGYGGNRQR 534
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 145/395 (36%), Positives = 222/395 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 182 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 238
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 239 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 298
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 299 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 358
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 359 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 416
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 417 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 476
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 477 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 536
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E +L ++ GG GGRS Y
Sbjct: 537 KVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRY 571
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 145/395 (36%), Positives = 222/395 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 180 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 236
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 237 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 296
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 297 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 356
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 357 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 414
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 415 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 474
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 475 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 534
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E +L ++ GG GGRS Y
Sbjct: 535 KVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRY 569
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 145/395 (36%), Positives = 222/395 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 182 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 238
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 239 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 298
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 299 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 358
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 359 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 416
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 417 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 476
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 477 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 536
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E +L ++ GG GGRS Y
Sbjct: 537 KVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRY 571
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 127/345 (36%), Positives = 194/345 (56%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+KL + +IV AL GI + F IQ+ L A+ G D+IG+ARTG GKT AFG+P+L +I
Sbjct: 13 AKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRI 72
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE------FHESAPSLD----------TICV 205
+ P LV+ PTREL QV + + + P D + +
Sbjct: 73 TSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSI 132
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG P Q+ AL G D VVGTPGR++DL ++ L L + +VLDEAD+ML +GF D
Sbjct: 133 YGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPD 192
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+E IL ++P +RQSM+FSATMP I +L ++ P + + D +
Sbjct: 193 IERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRA 252
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRER 384
+K ++ +++ +G ++FT+TKR A ++A + + + +HGD+ Q RE+
Sbjct: 253 HALDKVELVSRVLQARDRGAT-MIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREK 311
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
L AFR G ++L+ATDVAARG+D+ +V +I+Y+ P + +VH
Sbjct: 312 ALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVH 356
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 142/397 (35%), Positives = 221/397 (55%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK-- 167
++ + + G ++ PIQ AM+GRD+IG A TG+GKTL++ +P I+ N +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA---IVHVNAQPM 166
Query: 168 --HGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVD 223
HG G P+ LVLAPTRELA Q+++E + S+ + T C+YGG P Q+R L GV+
Sbjct: 167 LAHGDG--PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVE 224
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
V+ TPGR+ID+++ N NL V ++VLDEAD+ML +GF + I+ + +RQ++ +S
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWS 284
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT P + L+ K+L NP V ++G SD K I S +K + + +L+ +
Sbjct: 285 ATWPKEVEQLSKKFLYNPYKV-IIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMD 343
Query: 344 GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G + +VF TK+ D++ + + +HGD SQ++R+ LS FR G+ I+ ATDV
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK---SIE 459
AARGLDV +V +I+Y+ P + E +VH +A +T AR K +I
Sbjct: 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNIL 463
Query: 460 RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDR 496
++ G + + P +A G + G G RDR
Sbjct: 464 QEAGQKVS--PELASMGR----STAPPPPGLGGFRDR 494
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 146/422 (34%), Positives = 229/422 (54%)
Query: 52 KSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVA-----YDDSSKDEG-----LDI 101
KS+ + T++ +S P F+S Q+ +D +++ D+S D+ +
Sbjct: 18 KSKGTKDTKKNTEVSPPY-FQSPALDNVPQTEIDKFLSDHSIKITDASADKPSLRPIISF 76
Query: 102 SKLDIS-QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L S +D+ A L G + IQ A GRD+IG A TG+GKTLAFG+P L K
Sbjct: 77 SFLPPSNKDLYAPLD--GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKK 134
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRAL 218
++ K R PL +V++PTRELA Q+ + + A +D C++GG Q AL
Sbjct: 135 VLDLKTKQKSCR-PLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREAL 193
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
VV TPGR+ DL +L+L V+++VLDEAD+ML GF +D++ I+ +P R
Sbjct: 194 KSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKR 252
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSIIG 335
Q++MF+AT PP +R+L + ++ +P+TV + GD +D + I +EK +
Sbjct: 253 QTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLV 312
Query: 336 QLITEHAKG--GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
Q++ H +G K + F K++A R+ + K + +HGD+SQ +R R+L AF+ G
Sbjct: 313 QILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSG 372
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQA 452
+L+ATDVAARGLD+P+V L+++ P T E +VH AI ++T+
Sbjct: 373 AATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDK 432
Query: 453 RQ 454
Q
Sbjct: 433 AQ 434
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 559 (201.8 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 148/427 (34%), Positives = 231/427 (54%)
Query: 86 DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
D + D S KD LD S + + ++ + +K P+QK + +GRD++
Sbjct: 138 DNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMAC 197
Query: 143 ARTGTGKTLAFGIPILDKIIKFN-----EK----HGRGRNPLCLVLAPTRELAKQVEKEF 193
A+TG+GKT F P+ ++ + EK + R P LVLAPTRELA Q+ +E
Sbjct: 198 AQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257
Query: 194 HE-SAPSLDTICV-YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
+ + S CV YGG PI +QMR +D G D +V TPGR+ DL++R ++L+ ++++VL
Sbjct: 258 RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVL 317
Query: 252 DEADQMLSVGFAEDVEVILER--LP--QNRQSMMFSATMPPWIRSLTNKYLKNP--LTVD 305
DEAD+ML +GF + I+E +P +NRQ++MFSAT P I+ L +L N L+V
Sbjct: 318 DEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVG 377
Query: 306 LVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA 365
VG + + + I LY M +K +++ L EH G ++F +TKR AD+L +
Sbjct: 378 RVGSTSENITQRI-LY--VDDMDKKSALLDLLSAEHK--GLTLIFVETKRMADQLTDFLI 432
Query: 366 -KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTS 424
+++ +HGD +Q++RER LSAF+ +IL+AT VAARGLD+PNV +I+Y+LP+
Sbjct: 433 MQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDI 492
Query: 425 ETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDM 484
+ +VH A + VK + + ++P + N
Sbjct: 493 DDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQ--NSR 550
Query: 485 GGRSGYG 491
GGR+ G
Sbjct: 551 GGRTRGG 557
Score = 38 (18.4 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 477 GGDMYNDMGGRSGYGSMRDR 496
G Y GG +GS R R
Sbjct: 567 GSRDYRKHGGNGSFGSTRPR 586
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 140/404 (34%), Positives = 216/404 (53%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S++ + ++ + R+G IQ AM G + +G A+TG+GKTL + IL
Sbjct: 282 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGY---ILP 338
Query: 160 KIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQ 214
I+ N + RG P+ LVLAPTRELA+Q+++ EF S+ +T CV+GG P Q
Sbjct: 339 AIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT-CVFGGAPKGGQ 397
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
MR L G + V+ TPGR+ID + + NL ++VLDEAD+ML +GF + I+ ++
Sbjct: 398 MRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR 457
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIAT--SMYEK- 330
+RQ++M+SAT P ++ L +L N + ++ +G + I + + S EK
Sbjct: 458 PDRQTLMWSATWPKEVKQLAEDFLGNYIQIN-IGSLELSANHNIRQVVDVCDEFSKEEKL 516
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAF 389
+++ + GK I+F +TKR D L + C +HGD SQS+R+ L F
Sbjct: 517 KTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREF 576
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD 449
R G+ NIL+ATDVAARGLDV + +I+++ P SE ++H ++ +T
Sbjct: 577 RSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTK 636
Query: 450 QQARQVKSIERDVGCRFTQLPRIAVEG--GGDMYNDMGGRSGYG 491
A+Q K++ DV Q A+E Y+ GGRS YG
Sbjct: 637 NNAKQAKALV-DVLREANQEINPALENLARNSRYDGGGGRSRYG 679
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 550 (198.7 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 142/377 (37%), Positives = 203/377 (53%)
Query: 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195
G D++G A TG+GKTLAF +P L KII ++ G PL LV+APTRELA+Q+E+
Sbjct: 147 GNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKT 206
Query: 196 S--APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
S S+ +C YGG Q R L GVD V+GTPGR+ DL++++ +LS VQ++VLDE
Sbjct: 207 SIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKH--HLSSVQYLVLDE 264
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV-----DLVG 308
AD+ML +GF +E +++++P+ RQ++MFSAT P ++ L +K+LK+P+ + +L G
Sbjct: 265 ADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTG 324
Query: 309 DSD--QKLA--DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364
+ Q + D +S +Y++ I +++T IVF K D H +
Sbjct: 325 SINVTQHIVNIDDLSDLQSDDLIYDE---INKILTADPTN-TVIVFCNEKYKCDDFQHYL 380
Query: 365 AKSYNCEP--LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN 422
+ N + LH Q RE L FRD R ILIATDVAARGLD+P+V + +Y LP
Sbjct: 381 STQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPG 440
Query: 423 TSETFVHXXXXXXXXXXXXSAILIYTDQ--QARQVKSIERDVGCRFTQ-LPRIAVEG--G 477
E +VH A T Q R + I + + L + AV G
Sbjct: 441 NIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNLRDLVKILQRTNQKIPDFLEKFAVHSRQG 500
Query: 478 GDMYNDMGGRSGYGSMR 494
Y GGR G G R
Sbjct: 501 ISRYGG-GGRGGRGGGR 516
Score = 46 (21.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 476 GGGDMYNDMGGRSGYGS 492
GGG N GG GYG+
Sbjct: 553 GGGSWGNRNGGGGGYGN 569
Score = 44 (20.5 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 476 GGGDMYNDMGGRSGYGSMRDRQYADTGF 503
GGG+ N+ G G GS +R G+
Sbjct: 540 GGGNWGNNRNGGGGGGSWGNRNGGGGGY 567
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 440 (159.9 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 101/308 (32%), Positives = 172/308 (55%)
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
EK G+ L+L PTRELA QV K+F + P + VYGG ++ Q + L G+
Sbjct: 84 EKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGV-VYGGGKMASQTKMLKQGL 142
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D +V TPGR+++ + ++LS+V+F+VLDEAD+ML +GF D+E +L + Q++MF
Sbjct: 143 DVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMF 202
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SAT ++SL N+ LK+P T+ + ++ ++Y + K ++ +LI +
Sbjct: 203 SATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEE--RKRELLSELIGVN- 259
Query: 343 KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
+ +VF TK A+ LA + HGD +Q R + L F +G+ +L+ATD
Sbjct: 260 NWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATD 319
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERD 461
VAARGLD+P++ ++++ LP E +VH +AI + + + R +++IE+
Sbjct: 320 VAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQL 379
Query: 462 VGCRFTQL 469
+ +F ++
Sbjct: 380 IERKFERI 387
Score = 155 (59.6 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 40/107 (37%), Positives = 55/107 (51%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + + +S D++ A+ G L PIQ+ + QG D++ A+TGTGKT AF +PIL
Sbjct: 1 MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60
Query: 159 DKIIKFN----------------EKHGRGRNPLCLVLAPTRELAKQV 189
D I K N EK G+ L+L PTRELA QV
Sbjct: 61 DAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQV 107
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 147/398 (36%), Positives = 225/398 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 335
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455
Query: 456 KSIE---RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E + + + QL + GGG GGRS Y
Sbjct: 456 KVLEEANQAINPKLMQL--VDHRGGG---GGGGGRSRY 488
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 147/398 (36%), Positives = 225/398 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 335
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455
Query: 456 KSIE---RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E + + + QL + GGG GGRS Y
Sbjct: 456 KVLEEANQAINPKLMQL--VDHRGGG---GGGGGRSRY 488
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 147/398 (36%), Positives = 225/398 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 180 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 236
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 237 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 296
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 297 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 356
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 357 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 414
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 415 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 474
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 475 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 534
Query: 456 KSIE---RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E + + + QL + GGG GGRS Y
Sbjct: 535 KVLEEANQAINPKLMQL--VDHRGGG---GGGGGRSRY 567
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 147/398 (36%), Positives = 225/398 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 335
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ-V 455
TDVA+RGLDV +V +I+Y+ PN+SE +VH +A +T +QAR+ +
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455
Query: 456 KSIE---RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
K +E + + + QL + GGG GGRS Y
Sbjct: 456 KVLEEANQAINPKLMQL--VDHRGGG---GGGGGRSRY 488
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 124/359 (34%), Positives = 206/359 (57%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
++S D++ A+ R G + PIQ + + +D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 9 NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI--- 65
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGV 222
+ N +V+APTRELA QV +E ++ + +YGG I Q+RAL
Sbjct: 66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 122
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+ +VGTPGR++D I R + L+ V VV+DEAD+ML++GF +D+E IL +P Q+++F
Sbjct: 123 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 182
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I+ + +++ P V + + + I + + +K + +L+ +
Sbjct: 183 SATMPAPIKRIAERFMTEPEHVKV--KAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS 240
Query: 343 KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
IVF +TKR D LA A+ + Y E +HGD++Q++R L F++G +L+ATD
Sbjct: 241 PE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATD 299
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIER 460
VAARGLD+ V + ++++P E++VH A+ T ++ +++IE+
Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 129/382 (33%), Positives = 220/382 (57%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L +S + A++ +G PIQ + + G+D++ A+TGTGKT F +P+L
Sbjct: 1 MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 159 DKIIKFNE-KHGRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQM 215
+ + K ++ K G+ R LVL PTRELA QV + E + L + V+GG PI+ Q+
Sbjct: 61 ELLAKGHKAKSGQTR---ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L +GVD +V TPGR++DL+++NA+ ++++ +VLDEAD+ML +GF D++ IL LP
Sbjct: 118 NKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPA 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++MFSAT IR L + +P+ + + + A + + +K +++
Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRN--AAATTVKQWICPVDKTQKSALLI 235
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
QLI + + +VF++TK A+RLA ++ ++ + +HG+ SQ R + L+ F+ G
Sbjct: 236 QLIKQE-NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEV 294
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ 454
+L+ATD+AARGLD+ + +++++LPN E +VH A+ + + ++ +
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKL 354
Query: 455 VKSIERDVGCRFTQLPRIAVEG 476
+K IER + L R VEG
Sbjct: 355 LKDIERLIN---RVLERQEVEG 373
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 130/378 (34%), Positives = 210/378 (55%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S D+ A+ R G + PIQ + + +D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 10 LSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKI---- 65
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
+ N +V+APTRELA QV +E ++ + +YGG I Q+RAL
Sbjct: 66 --NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPH 123
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+VGTPGR++D I R + L V VVLDEAD+ML++GF ED+E IL +P Q+++FS
Sbjct: 124 IIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFS 183
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP I+ + +++ NP V + + + I + + +K + +L+ +
Sbjct: 184 ATMPAPIKRIAERFMTNPEHVKV--KAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSP 241
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
IVF +TKR D L A+ + Y E +HGD++Q++R L F+ G +L+ATDV
Sbjct: 242 E-LAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDV 300
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDV 462
AARGLD+ V + ++++P E++VH A+ T ++ +++IE+
Sbjct: 301 AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTT 360
Query: 463 GCRFTQL--PRI--AVEG 476
+ ++ P + A+EG
Sbjct: 361 KRKMDRMKAPTLDEAIEG 378
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 122/360 (33%), Positives = 200/360 (55%)
Query: 110 IVAALARR----GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+A L R G P+Q A + + GRD++ A TG+GKT AF +P+L ++ +
Sbjct: 16 IIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAK 75
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYG 221
CLVL PTRELA+QV F A L + +GG ++ QM++L G
Sbjct: 76 SADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAG 135
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D +V TPGR++DL+ NAL L++V VLDEAD+MLS+GF E++E +L LP+ +Q+++
Sbjct: 136 ADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLL 195
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSAT P +R+LT K L PL L + + + + I + +K +++ LI +H
Sbjct: 196 FSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV----ITVNREQKTALLAHLIKQH 251
Query: 342 AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ + ++F K + LA ++K + E HGD +Q R R L F++G ++LIAT
Sbjct: 252 -QWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIAT 310
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIER 460
D+AARG+D+ + ++I+++LP + ++H A+ + + ++ IE+
Sbjct: 311 DIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEK 370
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 122/360 (33%), Positives = 200/360 (55%)
Query: 110 IVAALARR----GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+A L R G P+Q A + + GRD++ A TG+GKT AF +P+L ++ +
Sbjct: 16 IIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAK 75
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYG 221
CLVL PTRELA+QV F A L + +GG ++ QM++L G
Sbjct: 76 SADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAG 135
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D +V TPGR++DL+ NAL L++V VLDEAD+MLS+GF E++E +L LP+ +Q+++
Sbjct: 136 ADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLL 195
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSAT P +R+LT K L PL L + + + + I + +K +++ LI +H
Sbjct: 196 FSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV----ITVNREQKTALLAHLIKQH 251
Query: 342 AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ + ++F K + LA ++K + E HGD +Q R R L F++G ++LIAT
Sbjct: 252 -QWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIAT 310
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIER 460
D+AARG+D+ + ++I+++LP + ++H A+ + + ++ IE+
Sbjct: 311 DIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEK 370
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 129/370 (34%), Positives = 209/370 (56%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ KL + ++ A+ G PIQK + ++G +++G+A TGTGKT A+ +P+L
Sbjct: 3 EFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRA 217
+I RG+ L++ PTRELA QV E + L + VYGG I Q+R
Sbjct: 63 RI-------QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRG 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV+ +VGTPGR++D I R +E++ V+LDEAD+ML +GF +D+E IL L +
Sbjct: 116 LRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSAT+P I+++ K+L TV LVG +K I + + E I G +
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGR--EKTVPAIR--QVYYELPETEKIEGLV 231
Query: 338 -ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
I + IVF +TK+ D + + + Y + LHGD+SQ +R +T+ +F+ G+
Sbjct: 232 SILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTE 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
+L+ATDVAARGLD+P+V +I++++P E+++H AI + ++ + +
Sbjct: 292 LLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLL 351
Query: 456 KSIERDVGCR 465
K+IE + R
Sbjct: 352 KAIEEAINKR 361
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 129/370 (34%), Positives = 209/370 (56%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ KL + ++ A+ G PIQK + ++G +++G+A TGTGKT A+ +P+L
Sbjct: 3 EFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRA 217
+I RG+ L++ PTRELA QV E + L + VYGG I Q+R
Sbjct: 63 RI-------QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRG 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV+ +VGTPGR++D I R +E++ V+LDEAD+ML +GF +D+E IL L +
Sbjct: 116 LRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSAT+P I+++ K+L TV LVG +K I + + E I G +
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGR--EKTVPAIR--QVYYELPETEKIEGLV 231
Query: 338 -ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
I + IVF +TK+ D + + + Y + LHGD+SQ +R +T+ +F+ G+
Sbjct: 232 SILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTE 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
+L+ATDVAARGLD+P+V +I++++P E+++H AI + ++ + +
Sbjct: 292 LLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLL 351
Query: 456 KSIERDVGCR 465
K+IE + R
Sbjct: 352 KAIEEAINKR 361
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 126/381 (33%), Positives = 214/381 (56%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + + ++A + G + PIQ + P ++G D+IG A+TGTGKT A+ +P++
Sbjct: 1 MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ + GR R LVLAPTRELA Q+ + F + +YGG + Q+R
Sbjct: 61 QKML--STPRGRVRT---LVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIR 115
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD VV PGR++D I R +++ V+ +++DEAD+M +GF D++ IL+ L Q
Sbjct: 116 RLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQP 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+++FSATMPP +R LT + NP+T+ +G + S+Y + + P +I
Sbjct: 176 HQTLLFSATMPPEVRKLTLETQTNPVTIQ-IGTQAPASSVSHSVYPVKNHQ-KTPLLIEI 233
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T K ++F +TK A+ LA ++++ + L G++SQ++R + FR G F
Sbjct: 234 LKTTETKS--VLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFK 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
IL+ATD+AARGLD+ ++ +I+Y++P+T E + H A+ + T + V
Sbjct: 292 ILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMV 351
Query: 456 KSIERDVGCRFTQLPRIAVEG 476
+ I++ + + + R+ V+G
Sbjct: 352 RDIQKLIN---SPIQRLRVDG 369
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 577 (208.2 bits), Expect = 2.6e-55, P = 2.6e-55
Identities = 142/402 (35%), Positives = 226/402 (56%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ + R+G +K IQ A+ GRD++G A+TG+GKTLA+ +P + I
Sbjct: 248 VIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGN-QPPII 306
Query: 170 RGRNPLCLVLAPTRELAKQVE---KEF-HESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
RG P+ LVLAPTRELA+Q++ +++ H P + C++GG+ Q R LD GV+ +
Sbjct: 307 RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVI 366
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I+E++ +RQ +M+SAT
Sbjct: 367 IATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSAT 426
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQLITEHA-- 342
P +++L +L + + ++ +G + I + I T + EKP + L+ E +
Sbjct: 427 WPKEVQALAGDFLNDYIQIN-IGSMNLSANHNIRQIVEICTEI-EKPQRLVCLLNEISPI 484
Query: 343 -----KGGKCIVFTQTK-RDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
G K IVF +TK + D L A+ YN +HGD +Q++R+ L FR+G+ NI
Sbjct: 485 KNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNI 544
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQAR 453
LIATDVA+RGLDV ++ +I+Y+ PN+SE +VH +A +T +QAR
Sbjct: 545 LIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQAR 604
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY-GSMR 494
++ S+ + G Q P A+ D+ M GY G+ R
Sbjct: 605 ELISVLEEAG----QTPSQALL---DLARSMPSSGGYRGNKR 639
>TIGR_CMR|SPO_3833 [details] [associations]
symbol:SPO_3833 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K05592 InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_169021.1
ProteinModelPortal:Q5LLT8 GeneID:3196362 KEGG:sil:SPO3833
PATRIC:23381169 HOGENOM:HOG000268794 OMA:MQHRSGR Uniprot:Q5LLT8
Length = 709
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 137/379 (36%), Positives = 211/379 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
LDI + + ++ ALA RG L +Q+AV +P + D++ ARTG+GKT+ FG+ I
Sbjct: 23 LDIPLM--TSPLLDALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIA 80
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE----FHESAPSLDTICVYGGTPISHQ 214
++ E G PL L++APTRELA QV +E F ++ + T C+ GG +
Sbjct: 81 PTLLGEAETLGPPAAPLALIVAPTRELALQVSRELTWLFAKAGGRIAT-CI-GGMDARTE 138
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
R L+ G VVGTPGR+ D I R AL+L++++ VVLDEAD+ML +GF ED+E +L P
Sbjct: 139 RRTLERGAHIVVGTPGRLRDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAP 198
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++R++++FSAT+ P I L Y + + +G Q +D IS ++ S + I
Sbjct: 199 EDRRTLLFSATVSPAIAELAKTYQRQAARISTLGGERQH-SD-ISYQAVQVSGGDGEHAI 256
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
L+ H IVF T+ RL +A + + L G++SQ +R L A RDGR
Sbjct: 257 INLLRFH-DAPTAIVFANTRAAVARLTARLANRGFAVVSLSGELSQDERSHALQAMRDGR 315
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
+ +ATDVAARG+D+PN+DL+IH +LP +E +H + LI D+ ++
Sbjct: 316 ARVCVATDVAARGIDLPNLDLVIHADLPTNTEGLLHRSGRTGRAGRKGISALIVPDKISK 375
Query: 454 QVKSIER--DVGCRFTQLP 470
+ + + + +TQ P
Sbjct: 376 KASRLLKWAKIEAEWTQAP 394
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 545 (196.9 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 143/427 (33%), Positives = 225/427 (52%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+++D+ + + + R K P+Q+ + GRD++ A+TG+GKT AF PI+ I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 162 IK---FNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+K G RG PL ++L+PTRELA Q+ E + + + + YGGTP++ Q+
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQI 268
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-- 273
R L+ GVD +V TPGR+ DL++R ++L V+F+ LDEAD+ML +GF + I++++
Sbjct: 269 RELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDM 328
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYE 329
P RQ+M+FSAT P I+ L + +L N L V VG S + + + S +
Sbjct: 329 PPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEF--VHDS--D 384
Query: 330 KPSIIGQLI---TEHAKGGK---CIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQR 382
K S + L+ E+ GK +VF +TK+ AD L + + + +HGD SQ +R
Sbjct: 385 KRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQER 444
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXS 442
E L +F+ GR IL+ATDVAARGLD+P+V +++++LPN + +VH
Sbjct: 445 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGL 504
Query: 443 AILIYTDQQARQVKSI-------ERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRD 495
A + D K + ++V T+ A GGG GGR G R
Sbjct: 505 ATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYASRASFGGGKNRRS-GGRFGGRDFRR 563
Query: 496 RQYADTG 502
++ G
Sbjct: 564 ESFSRGG 570
Score = 41 (19.5 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 476 GGGDMYNDMGGRSGYGSM 493
GG D Y GG GYG +
Sbjct: 571 GGADYY---GGGGGYGGV 585
Score = 37 (18.1 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 574 SDRSSAFGDTGSRQSGRFG 592
+ R+S G R GRFG
Sbjct: 539 ASRASFGGGKNRRSGGRFG 557
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 142/409 (34%), Positives = 223/409 (54%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ + R+ ++ IQ A+ G DM+G A+TG+GKTL++ +P I+ N +
Sbjct: 92 NVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA---IVHINHQP 148
Query: 169 --GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDA 224
RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q+R L+ GV+
Sbjct: 149 FLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEI 208
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+SA
Sbjct: 209 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 268
Query: 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQLITE--H 341
T P +R L +LK + ++ +G + I + + + EK + +L+ E
Sbjct: 269 TWPKEVRQLAEDFLKEYVHIN-IGALELSANHNILQIVDVCHDV-EKDDKLIRLMEEIMS 326
Query: 342 AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+ G+ ILIAT
Sbjct: 327 EKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 386
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK---S 457
DVA+RGLDV +V +I+Y+ PN+SE ++H +A +T +QV S
Sbjct: 387 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLIS 446
Query: 458 IERDVGCRFTQ--LPRIAVEGGG-------DMYNDMGGRSGYGSMRDRQ 497
+ R+ L I G G D Y+ G R G+ S R+R+
Sbjct: 447 VLREANQAINPKLLQLIEDRGSGRSRGDRRDRYS-AGKRGGFSSFRERE 494
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 142/409 (34%), Positives = 223/409 (54%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ + R+ ++ IQ A+ G DM+G A+TG+GKTL++ +P I+ N +
Sbjct: 100 NVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA---IVHINHQP 156
Query: 169 --GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDA 224
RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q+R L+ GV+
Sbjct: 157 FLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEI 216
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+SA
Sbjct: 217 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 276
Query: 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQLITE--H 341
T P +R L +LK + ++ +G + I + + + EK + +L+ E
Sbjct: 277 TWPKEVRQLAEDFLKEYVHIN-IGALELSANHNILQIVDVCHDV-EKDDKLIRLMEEIMS 334
Query: 342 AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
K K IVF +TKR D L M + + +HGD SQ +R+ L+ F+ G+ ILIAT
Sbjct: 335 EKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 394
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK---S 457
DVA+RGLDV +V +I+Y+ PN+SE ++H +A +T +QV S
Sbjct: 395 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLIS 454
Query: 458 IERDVGCRFTQ--LPRIAVEGGG-------DMYNDMGGRSGYGSMRDRQ 497
+ R+ L I G G D Y+ G R G+ S R+R+
Sbjct: 455 VLREANQAINPKLLQLIEDRGSGRSRGDRRDRYS-AGKRGGFSSFRERE 502
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 132/395 (33%), Positives = 215/395 (54%)
Query: 82 SAVDDYVAYDDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
S+V D + + D+ ++ +++ ++++ + G K IQK + P G+D+I
Sbjct: 11 SSVVDADGLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVI 70
Query: 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200
+A++GTGKT F + IL +I + H + LV+APTRELA+Q++K L
Sbjct: 71 AQAQSGTGKTATFSVSILQRI-DHEDPHVQA-----LVMAPTRELAQQIQKVMSALGEYL 124
Query: 201 DTI---CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
+ C+ GGT + R L+ G+ VVGTPGRV D+I RNAL+ S ++ VLDEAD+M
Sbjct: 125 NVNILPCI-GGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
LS GF + + + +PQ+ Q ++ SATMP + +TN++++NP+ + LV D+ +G
Sbjct: 184 LSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRI-LV-KKDELTLEG 241
Query: 318 ISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHG 375
I + I E K + L + ++F T+R D L M ++ + LHG
Sbjct: 242 IRQFYINVQKDEWKFDCLCDLYNV-VNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHG 300
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXX 435
D+ Q++R+ + FR G +LI TD+ ARG+DV V L+I+Y+LP+ E ++H
Sbjct: 301 DMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSG 360
Query: 436 XXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLP 470
AI T+ ARQ+K IE + ++P
Sbjct: 361 RFGRKGVAINFVTENDARQLKEIESYYTTQIEEMP 395
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 147/400 (36%), Positives = 225/400 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q ++ L + ++ PIQ A+ GRDM+G A+TG+GKTLA+ +P I+ N +
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157
Query: 168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
RG P+CLVLAPTRELA+QV++ + + L + C+YGG P Q+R L+ GV+
Sbjct: 158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+ TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+S
Sbjct: 218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQLITE-- 340
AT P +R L +L++ ++ VG+ + I L + M EK + QL+ E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEKDHKLIQLMEEIM 335
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K K I+F +TKR D L M + + +HGD SQ +R+ L+ FR G+ ILIA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395
Query: 400 TDVAARGL--DVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQ 454
TDVA+RGL DV +V +I+Y+ PN+SE +VH +A +T +QAR+
Sbjct: 396 TDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 455
Query: 455 -VKSIE---RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY 490
+K +E + + + QL + GGG GGRS Y
Sbjct: 456 LIKVLEEANQAINPKLMQL--VDHRGGG---GGGGGRSRY 490
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 544 (196.6 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 124/344 (36%), Positives = 200/344 (58%)
Query: 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE-KHGRGRNPL 175
+G K PIQ A+ GRDMIG A TG+GKTL++ +P + I + ++G G P+
Sbjct: 145 QGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDG--PI 202
Query: 176 CLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
LVLAPTRELA Q++ E F +S+ +T CVYGG P Q+R L GV+ + TPGR+
Sbjct: 203 VLVLAPTRELAVQIQTECSKFGKSSRIRNT-CVYGGAPKGPQIRDLARGVEICIATPGRL 261
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
ID+++ NL V ++VLDEAD+ML +GF + I++++ +RQ++M+SAT P ++
Sbjct: 262 IDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQ 321
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLITE-HAKGGKCIVF 350
LT YL +P+ V +G + + I+ L + ++ ++ L + + K K +VF
Sbjct: 322 LTRDYLNDPIQVT-IGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVF 380
Query: 351 TQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
TKR D + + + + +HGD Q++R+ L FR G+ +I++ATDVAARG+DV
Sbjct: 381 ASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDV 440
Query: 410 PNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
+ +I+Y++P E +VH +AI +T+ ++
Sbjct: 441 KGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 484
Score = 39 (18.8 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 11/27 (40%), Positives = 11/27 (40%)
Query: 476 GGGDMYNDMGGRSGYGSMRDRQYADTG 502
GG GGR GYG Y TG
Sbjct: 526 GGRGGRGGRGGRGGYGG--GGGYRSTG 550
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 141/390 (36%), Positives = 217/390 (55%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK--FNEKHGRGRNPLCLVLAP 181
PIQ A+ G+DM+G A+TG+GKTL++ +P + I F E HG G P+CLVLAP
Sbjct: 121 PIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLE-HGDG--PICLVLAP 177
Query: 182 TRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
TRELA+QV++ E A + + C+YGG P Q+R L+ GV+ + TPGR+ID ++
Sbjct: 178 TRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAG 237
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
NL ++VLDEAD+ML +GF + I++++ +RQ++M+SAT P +R L +LK
Sbjct: 238 KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 297
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDA 357
+ ++ VG I + EK + +L+ E K K I+F +TKR
Sbjct: 298 EYIQIN-VGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRC 356
Query: 358 DRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416
D L M + + +HGD +Q +R+ L+ F+ G+ ILIATDVA+RGLDV +V +I
Sbjct: 357 DDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVI 416
Query: 417 HYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQVKSIERDVGCRFT-QLPRI 472
+++ PN SE ++H +A +T +QA + S+ R+ +L ++
Sbjct: 417 NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQM 476
Query: 473 AVEGGGDMYNDMGGRSGYGSMRDRQYADTG 502
A + GG GGR G G DR+ +G
Sbjct: 477 AEDRGG---RSRGGRGG-GYRDDRRDRHSG 502
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 141/412 (34%), Positives = 225/412 (54%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH- 168
++ + + G PIQ+ AM GRDM+G + TG+GKTL++ +P I+ N +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA---IVHINAQPL 189
Query: 169 -GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDA 224
G P+ LVLAPTRELA Q+++E F +S+ +T CVYGG P Q+R L GV+
Sbjct: 190 LSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT-CVYGGVPRGPQIRDLIRGVEI 248
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
+ TPGR++D++ N NL V ++VLDEAD+ML +GF + I++++ +RQ++MFSA
Sbjct: 249 CIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSA 308
Query: 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG 344
T P ++ L YL + + V VG D + I +K + +G+ I E K
Sbjct: 309 TWPKEVQRLARDYLNDYIQVT-VGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKD 367
Query: 345 --GKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
K ++FT TKR AD + + + + +HGD +Q +R+ L+ FR G+ I++ATD
Sbjct: 368 RDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATD 427
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTD---QQARQVKSI 458
VA+RG+DV + + +Y+ P +E +VH +A +T +QAR++ SI
Sbjct: 428 VASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSI 487
Query: 459 ----ERDVGCRFTQLPRIAVEGGGDMYNDMG-GRSGY---GSMRDRQYADTG 502
++D+ + ++ R + G G Y G GR G+ G +R TG
Sbjct: 488 LSEAKQDIDPKLEEMARYSSGGRGGNYRRGGYGRGGFRRGGGYGNRNRGFTG 539
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 137/406 (33%), Positives = 219/406 (53%)
Query: 65 ISRPLDFKSSIAWQHAQSAVDDYV-----AYDDSSKDEGLDISKLDISQDIVAALARRGI 119
I++P ++ + + + A D Y+ ++ D E L + L + V+A R G+
Sbjct: 124 IAQPAIGSANASNHNDEEAYDRYIKKHNISFADPKSSENL-LPILQFDELDVSAKLREGL 182
Query: 120 SKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
PIQ A + GRD++G A TG+GKT+AFGIP L + ++ P
Sbjct: 183 KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSV---PRV 239
Query: 177 LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
LV++PTRELA Q + + +L + VYGG P S Q RA ++GTPGR++D
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVIIGTPGRLLD 298
Query: 235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-----NRQSMMFSATMPPW 289
LI +++ S+V ++VLDEAD+ML GF +D+ I+ P +RQ++ FSAT P
Sbjct: 299 LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPES 358
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLITEH-AKGGK- 346
+R+L +LK+P+ + +G + + I+ + I K ++ L+ +H + GGK
Sbjct: 359 VRALAATFLKDPVKIT-IGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKD 417
Query: 347 --CIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
++F K++A R+ +A+ YN +HGD+SQ R + L+ F+ G+ +L+ATDVAA
Sbjct: 418 DKILIFVLYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAA 477
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
RGLD+P V L+I+ P T E +VH +AI +T Q
Sbjct: 478 RGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQ 523
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 540 (195.1 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 140/413 (33%), Positives = 224/413 (54%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+++D+ + + + R K P+Q+ + ++GRD++ A+TG+GKT AF PI+ I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 162 IKFNE-KHGRGRN---PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+K + RG PL ++L+PTRELA Q+ E + + + + YGGTPI+ Q+
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQL 281
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-- 273
R L+ GVD +V TPGR+ DL++R +++ ++F+ LDEAD+ML +GF + I+E++
Sbjct: 282 RELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 341
Query: 274 -PQN-RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYE 329
P+ RQ+++FSAT P I+ L +L N L V VG S + + + S +
Sbjct: 342 PPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEF--VLDS--D 397
Query: 330 KPSIIGQLI-TEHAKG--GK---CIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQR 382
K S + L+ + G GK +VF +TKR AD L + + + +HGD +Q +R
Sbjct: 398 KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQER 457
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXS 442
E L AF+ GR IL+ATDVAARGLD+P+V +++++LPN + +VH
Sbjct: 458 EVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 517
Query: 443 AILIYTDQQ---ARQVKSIERDVGCRFTQ-LPRIAVEG--GGDMYNDMGGRSG 489
A + D AR + + ++ + L R A GG GGR G
Sbjct: 518 ATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRSSFGGGKNRRSGGRFG 570
Score = 40 (19.1 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 574 SDRSSAFGDTGSRQSGRFG 592
+ RSS G R GRFG
Sbjct: 552 ASRSSFGGGKNRRSGGRFG 570
Score = 37 (18.1 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 476 GGGDMYNDMGGRSGYG 491
GGG Y GG GYG
Sbjct: 595 GGGGGY---GGGGGYG 607
Score = 37 (18.1 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 476 GGGDMYNDMGGRSGYG 491
GGG Y GG GYG
Sbjct: 589 GGGGGY---GGGGGYG 601
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 124/367 (33%), Positives = 203/367 (55%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + + I+ + +G + PIQK + + G D++G A+TGTGKT AF +PI++
Sbjct: 3 EFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRA 217
K + N+ + ++ L+L PTRELA Q+ + + + L T VYGG Q+ +
Sbjct: 63 KFGR-NKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDS 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
++ G+D +V TPGR++DLI+ +N ++ VLDEAD ML +GF +DV+ I+ +LP++R
Sbjct: 122 IELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMP I L L +P + + ++ S+Y + S K ++ +
Sbjct: 182 QTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKS--NKVPLLFNI 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+T+ A K ++F +TK AD + A+ K S LH +Q+ RE L F+D +
Sbjct: 240 LTK-ADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRV 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK 456
L+ATDVAARG+DV N+ L+I+Y LP ++H AI + RQ+
Sbjct: 299 LVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLT 358
Query: 457 SIERDVG 463
+IE +G
Sbjct: 359 NIENSIG 365
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 132/383 (34%), Positives = 205/383 (53%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L + ++A LA + PIQ + GRD+I A TG+GKT F +P+L K+
Sbjct: 11 TELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKL 70
Query: 162 ---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQ 214
I K+ +G LVL PTRELAKQV A + T+ V+GG ++ Q
Sbjct: 71 REDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQ 130
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
M AL GVD +V TPGR++DLI NA+ L +V+ +VLDEAD+MLS+GF E++ +L P
Sbjct: 131 MLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTP 190
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ +Q+++FSAT P + +LT + L NP+ + L L + +++ EK +++
Sbjct: 191 KKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQSADASTLVQRV--FTVNKG--EKTAVL 246
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393
LI + + + ++F K + LA +AK HGD QS+R R L F+ G
Sbjct: 247 AHLIQQE-QWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGD 305
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
+LIATD+AARGLD+ + ++I++ LP + ++H AI + +
Sbjct: 306 IEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYH 365
Query: 454 QVKSIERDVGCRFTQLPRIAVEG 476
IE+ +F +L R VEG
Sbjct: 366 HFSVIEKKN--KF-RLKREQVEG 385
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 132/386 (34%), Positives = 217/386 (56%)
Query: 81 QSAVDDYVAYDDSSKDEGLDISKLDI-SQDIVA--ALARRGISKL---FPIQKAVLEPAM 134
QS +D+Y ++ + ++ LD++ + S D ++ + + ISK PIQ +
Sbjct: 88 QSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISKFPKPTPIQAVAWPYLL 147
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194
G+D++G A TG+GKT AFG+P + ++ N++ RG LV++PTRELA Q+
Sbjct: 148 SGKDVVGVAETGSGKTFAFGVPAISHLM--NDQKKRGIQ--VLVISPTRELASQIYDNLI 203
Query: 195 --ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
+ CVYGG P Q L VV TPGR++DL++ +++LS+V ++VLD
Sbjct: 204 VLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLD 262
Query: 253 EADQMLSVGFAEDVE-VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
EAD+ML GF ED++ +I E RQ++MF+AT P +R L + ++ NP+ V +G++D
Sbjct: 263 EADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVS-IGNTD 321
Query: 312 QKLADG--ISLYSIATSMYEKPSIIGQLITEHA---KGGKCIVFTQTKRDADRLAHAMA- 365
Q A+ + + ++ ++ L H+ K K ++F K++A R+ +
Sbjct: 322 QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKY 381
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425
YN +HGD+SQ QR + L+ F+ G+ N+L+ATDVAARGLD+PNV +I+ P T E
Sbjct: 382 NGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441
Query: 426 TFVHXXXXXXXXXXXXSAILIYTDQQ 451
+VH +A ++T+Q+
Sbjct: 442 DYVHRIGRTGRAGQTGTAHTLFTEQE 467
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 570 (205.7 bits), Expect = 4.0e-54, P = 4.0e-54
Identities = 144/408 (35%), Positives = 216/408 (52%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ + L R G K PIQ + M GRD+IG A+TG+GKTLAF +P+ I+
Sbjct: 517 VSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQP 576
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVD 223
G + +++APTREL Q+ K+ + + SL +CVYGGT IS Q+ L G +
Sbjct: 577 SMED-GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAE 635
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 636 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 695
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + LK P+ V + G S + + + + + K + +L+
Sbjct: 696 MFSATFPRQMEALARRILKKPIEVIVGGRS--VVCKEVEQHVVILNDDAKFFKLLELLGI 753
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G IVF + +AD L + K SY C LHG I Q R+ T+ F+ G+ +LIA
Sbjct: 754 YQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIA 813
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y++PN E +VH SA T +Q+R I
Sbjct: 814 TSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDII 873
Query: 460 RDVGCRFTQLP----------RIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
R + T +P + E G + GG SG G D Q
Sbjct: 874 RAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQ 921
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 140/423 (33%), Positives = 234/423 (55%)
Query: 38 AKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDE 97
++S PV P +D S + + ++S+ D ++ + V+D SS
Sbjct: 100 SESSPVEPAANDSSSSTNYTQSSKLSSVSQS-DIDKFLS--DNEITVEDP---SSSSLRP 153
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
L ++ ++ I + L++ K PIQ + G+D+IG A TG+GKT AFG+P
Sbjct: 154 ILSFDQVQLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPA 211
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS-LDTICVYGGTPISHQM 215
++ II G + L ++PTRELA Q+ E +A S ++ + VYGG Q+
Sbjct: 212 INNIITT----GNTKTLSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQI 267
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R + + VV TPGR++DLI A+NL +V ++VLDEAD+ML GF ED++ I+
Sbjct: 268 RKIKTA-NVVVATPGRLVDLINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSN 326
Query: 276 N-RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG-ISLYSIATSMYEKPSI 333
+ RQ++MF+AT P +R L N ++ +P+ V VGD D+ A+ I+ + ++K
Sbjct: 327 SERQTLMFTATWPKEVRELANNFMNSPVKVT-VGDRDELSANKRITQVVEVINKFDKEKK 385
Query: 334 IGQLITEH----AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSA 388
+ QL+ ++ + K ++F K++A R+ + + ++ ++ +HGD+SQ QR LSA
Sbjct: 386 LIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSA 445
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYT 448
F+ G+ N+L+ATDVAARGLD+PNV ++I+ P T E +VH +A ++T
Sbjct: 446 FKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFT 505
Query: 449 DQQ 451
+ +
Sbjct: 506 EDE 508
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 122/371 (32%), Positives = 207/371 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L +S I+ A+A G +K IQ+ + + G+D+I A+TGTGKT +F +P+L
Sbjct: 1 MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60
Query: 159 DKI-IKFNE--KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISH 213
+++ ++ E K R + L+L PTRELA QVE + A LD ++ +YGG
Sbjct: 61 EQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQE 120
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q + L +GVD +V TPGR++D+ + L+ E+ +VLDEAD+ML +GF +D+ I+ERL
Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P++RQ+++FSATM +R L + + P+ + + D K I + + K ++
Sbjct: 181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASK--PKIEQWLVTVDKANKSAL 238
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG 392
+ +IT + ++F +TK A +L + K E +H +Q RE+ L+ F+ G
Sbjct: 239 LSHIITTQ-NWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSG 297
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQA 452
+ L+AT +AARGLD+ + +I+Y+LP + ++H AI + +
Sbjct: 298 KIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNF 357
Query: 453 RQVKSIERDVG 463
R++ +IE +G
Sbjct: 358 RELCAIESRLG 368
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 131/384 (34%), Positives = 209/384 (54%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ DE +D ++++ +++ + G + IQ+ + P ++G D+I +A++GTGKT
Sbjct: 15 ESNYDETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKT 74
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I +L KI N K + L+LAPTRELA+Q++K ++ C GG
Sbjct: 75 ATFSISVLQKI-DTNVKQCQA-----LILAPTRELAQQIQKVVVAIGDFMNIECHACIGG 128
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + M+AL G VVGTPGRV D+I+R L ++ VLDEAD+MLS GF E +
Sbjct: 129 TSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYD 188
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
I + LPQ+ Q ++ SATMP + +T K++++P+ + LV D+ +GI + IA
Sbjct: 189 IFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRI-LV-KKDELTLEGIKQFYIAVEKE 246
Query: 329 E-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
E K + L E + ++F T+R D L + A+ + +HGD+ Q+QR+ +
Sbjct: 247 EWKLDTLSDLY-ETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIM 305
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILI 446
FR G +LIATD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 306 KEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINF 365
Query: 447 YTDQQARQVKSIERDVGCRFTQLP 470
T R ++ IE+ + ++P
Sbjct: 366 VTADDVRMMREIEQFYSTQIEEMP 389
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 564 (203.6 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 132/371 (35%), Positives = 200/371 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ +L + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + I +K + +L+
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y PN E +VH A T+ QAR I
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 735
Query: 460 RDVGCRFTQLP 470
+ + T +P
Sbjct: 736 KALELSGTAVP 746
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 564 (203.6 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 132/371 (35%), Positives = 200/371 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ +L + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + I +K + +L+
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y PN E +VH A T+ QAR I
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 735
Query: 460 RDVGCRFTQLP 470
+ + T +P
Sbjct: 736 KALELSGTAVP 746
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 564 (203.6 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 132/371 (35%), Positives = 200/371 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ +L + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + I +K + +L+
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y PN E +VH A T+ QAR I
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 735
Query: 460 RDVGCRFTQLP 470
+ + T +P
Sbjct: 736 KALELSGTAVP 746
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 564 (203.6 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 132/371 (35%), Positives = 200/371 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ +L + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + I +K + +L+
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y PN E +VH A T+ QAR I
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 735
Query: 460 RDVGCRFTQLP 470
+ + T +P
Sbjct: 736 KALELSGTAVP 746
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 564 (203.6 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 132/371 (35%), Positives = 200/371 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ +L + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + I +K + +L+
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y PN E +VH A T+ QAR I
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 735
Query: 460 RDVGCRFTQLP 470
+ + T +P
Sbjct: 736 KALELSGTAVP 746
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 564 (203.6 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 132/371 (35%), Positives = 200/371 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ +L + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + I +K + +L+
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y PN E +VH A T+ QAR I
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 735
Query: 460 RDVGCRFTQLP 470
+ + T +P
Sbjct: 736 KALELSGTAVP 746
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 564 (203.6 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 132/371 (35%), Positives = 200/371 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ +L + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N+ NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + I +K + +L+
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
T VAARGLDV ++ L+++Y PN E +VH A T+ QAR I
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 735
Query: 460 RDVGCRFTQLP 470
+ + T +P
Sbjct: 736 KALELSGTAVP 746
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 563 (203.2 bits), Expect = 1.3e-53, P = 1.3e-53
Identities = 131/359 (36%), Positives = 193/359 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS I+ AL + G K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 378 ISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 437
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G P+ +++ PTRELA Q+ KE + + +L +CVYGGT IS Q+ L G +
Sbjct: 438 ALE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 496
Query: 224 AVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N NL V +VVLDEAD+M +GF V I++ + +RQ++
Sbjct: 497 IIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 556
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + + I K + +L+
Sbjct: 557 MFSATFPRAMEALARRILSKPIEVQVGGRS--VVCSDVEQHVIVIEEENKFLKLLELLGH 614
Query: 341 HAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L M SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 615 YQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVA 674
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
T VAARGLDV + L+++Y PN E +VH A T+ QAR I
Sbjct: 675 TSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDI 733
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 125/394 (31%), Positives = 212/394 (53%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I+ A++ G K+ PIQ+ + +G+D++ A+TGTGKT AF +PIL K+++ N
Sbjct: 11 EILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVE-NPSE 69
Query: 169 GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
N L+L PTRELA QV + E + + + +YGG + Q + L G D +V
Sbjct: 70 TLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIV 129
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
TPGR+++ + L+LS V F+VLDEAD+ML +GF+ D++ IL+ + + RQ+++FSAT
Sbjct: 130 ATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATF 189
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
++ L N+ + P + D AD +S K ++ +LI + +
Sbjct: 190 SSAVKKLANEMMIKPQVIS--ADKQNTTADTVSQVVYPVEQRRKRELLSELIGKK-NWQQ 246
Query: 347 CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
+VFT T+ AD L + E +HG+ +Q R R L F G+ +L+AT+VAAR
Sbjct: 247 VLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAAR 306
Query: 406 GLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCR 465
GLD+P+++ +++++LP +E +VH AI + ++ R + IE+ +G +
Sbjct: 307 GLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIGQK 366
Query: 466 FTQLPRIAVE-GGGDMY-NDMGGRSGYGSMRDRQ 497
++ E G D+ + R + + RQ
Sbjct: 367 IRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRQ 400
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 126/363 (34%), Positives = 209/363 (57%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S +++ A+ +G + P+Q+ + +Q RD++ A+TGTGKT F +P+L ++
Sbjct: 15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74
Query: 164 FNEKHGRGRNPL--CLVLAPTRELAKQV-E--KEFHESAPSLDTICVYGGTPISHQMRAL 218
R P+ L+L PTRELA QV E + + + P T+ V+GG I Q+ L
Sbjct: 75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATV-VHGGVSIKPQINHL 133
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD +V TPGR++DL+ + LNLS V+F VLDEAD+ML +GF D+ IL+ LP++RQ
Sbjct: 134 RRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT I+ LT+K L +P +++ + A I+ K ++ +I
Sbjct: 194 NLLFSATFSKEIKELTDKLLHSPALIEVARRNTA--AARITHVVHPVDRQRKRELLSFMI 251
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ +VFT+TK A+RL+ + + + +HG+ SQ+ R R L+ F+ G+ +L
Sbjct: 252 GSK-NWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVL 310
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
+ATDVAARGLD+ + +I++ELP+ ++ +VH AI + + + R ++
Sbjct: 311 VATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRD 370
Query: 458 IER 460
IE+
Sbjct: 371 IEK 373
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 126/363 (34%), Positives = 209/363 (57%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S +++ A+ +G + P+Q+ + +Q RD++ A+TGTGKT F +P+L ++
Sbjct: 15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74
Query: 164 FNEKHGRGRNPL--CLVLAPTRELAKQV-E--KEFHESAPSLDTICVYGGTPISHQMRAL 218
R P+ L+L PTRELA QV E + + + P T+ V+GG I Q+ L
Sbjct: 75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATV-VHGGVSIKPQINHL 133
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD +V TPGR++DL+ + LNLS V+F VLDEAD+ML +GF D+ IL+ LP++RQ
Sbjct: 134 RRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT I+ LT+K L +P +++ + A I+ K ++ +I
Sbjct: 194 NLLFSATFSKEIKELTDKLLHSPALIEVARRNTA--AARITHVVHPVDRQRKRELLSFMI 251
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ +VFT+TK A+RL+ + + + +HG+ SQ+ R R L+ F+ G+ +L
Sbjct: 252 GSK-NWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVL 310
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
+ATDVAARGLD+ + +I++ELP+ ++ +VH AI + + + R ++
Sbjct: 311 VATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRD 370
Query: 458 IER 460
IE+
Sbjct: 371 IEK 373
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 128/368 (34%), Positives = 207/368 (56%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++ + ++ +A G S PIQ+ L ++ G+D+ G+A+TGTGKT AF I +
Sbjct: 1 MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TI-CVYGGTPISHQMR 216
K+++ + + G R+P ++LAPTREL Q+EK+ TI +YGG Q
Sbjct: 61 TKLLR-SGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKN 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-- 274
AL G D VVGTPGR+ID +K+ +L E++ +V+DEAD+M +GF D+ IL RLP
Sbjct: 120 ALKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPY 179
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYEK-P 331
RQ++MFSAT+ + L +++ P V + +Q A+ + LY + EK P
Sbjct: 180 DKRQNLMFSATLNQRVMELAYEFMNVPEKVAVT--PEQMTAERVEQVLYHVGRK--EKFP 235
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++G L E + + ++F TKR+A+ L + A + C + GD+ Q +R + L F+
Sbjct: 236 LLLGLLRKEGME--RTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFK 293
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
G+ I+IATDVA+RGL + V +I+Y+LP +E +VH AI + +
Sbjct: 294 SGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADED 353
Query: 451 QARQVKSI 458
A +++I
Sbjct: 354 GAFHLEAI 361
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 117/373 (31%), Positives = 205/373 (54%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ +V LA G + PIQ + + +D++ A+TGTGKT AF +PIL
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMR 216
++ N+ + LVL PTRELA QV++ F + A D YGG I Q
Sbjct: 61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+ G+D ++ TPGR++D +++ ALNL+++ +V DEAD+ML +GF ++++ +L+++P
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+ I S + L++P +++ + +Y+I + K +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSD--RKTEFVSH 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + ++F++TK+ D+L + K + HGD+SQ RE+ L F+ G
Sbjct: 239 LVRSK-NWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQ 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
+L+ATDVAARGLD+ + +I++ELP +E ++H AI +++ + A +
Sbjct: 298 VLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357
Query: 456 KSIERDVGCRFTQ 468
+ +E + R Q
Sbjct: 358 EEVETLLDKRLPQ 370
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 129/385 (33%), Positives = 215/385 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S I+ A+ +G + PIQ + + G+D++ A+TGTGKT F +PIL
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
+ + K + R L+L PTRELA Q++ + P L + V+GG I+ QM
Sbjct: 61 ELLAKGPKV--RANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQM 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+ + G D +V TPGR++DL +NA+ +++ +VLDEAD+ML +GF D+ IL+ LP+
Sbjct: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSII 334
RQ+++FSAT IR L + NP+ + + +S + + +Y + +KP ++
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-IYP--ADVKKKPDML 234
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ E + +VF +TK A+RLA + + +HG+ SQ R R L+ F+ G
Sbjct: 235 VKLVKE-GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGE 293
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
IL+ATD+AARG+D+P + ++++ELP +E +VH AI + + +A
Sbjct: 294 VRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAP 353
Query: 454 QVKSIERDVGCRFTQ--LPRIAVEG 476
++ +IER TQ LPR+ + G
Sbjct: 354 ELFAIER-----LTQALLPRVNLAG 373
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 117/373 (31%), Positives = 205/373 (54%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ +V LA G + PIQ + + +D++ A+TGTGKT AF +PIL
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMR 216
++ N+ + LVL PTRELA QV++ F + A D YGG I Q
Sbjct: 61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+ G+D ++ TPGR++D +++ ALNL+++ +V DEAD+ML +GF ++++ +L+++P
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+ I S + L++P +++ + +Y+I + K +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSD--RKTEFVSH 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + ++F++TK+ D+L + K + HGD+SQ RE+ L F+ G
Sbjct: 239 LVRSK-NWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQ 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
+L+ATDVAARGLD+ + +I++ELP +E ++H AI +++ + A +
Sbjct: 298 VLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357
Query: 456 KSIERDVGCRFTQ 468
+ +E + R Q
Sbjct: 358 EEVETLLDKRLPQ 370
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 129/385 (33%), Positives = 215/385 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S I+ A+ +G + PIQ + + G+D++ A+TGTGKT F +PIL
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
+ + K + R L+L PTRELA Q++ + P L + V+GG I+ QM
Sbjct: 61 ELLAKGPKV--RANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQM 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+ + G D +V TPGR++DL +NA+ +++ +VLDEAD+ML +GF D+ IL+ LP+
Sbjct: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSII 334
RQ+++FSAT IR L + NP+ + + +S + + +Y + +KP ++
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-IYP--ADVKKKPDML 234
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ E + +VF +TK A+RLA + + +HG+ SQ R R L+ F+ G
Sbjct: 235 VKLVKE-GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGE 293
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
IL+ATD+AARG+D+P + ++++ELP +E +VH AI + + +A
Sbjct: 294 VRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAP 353
Query: 454 QVKSIERDVGCRFTQ--LPRIAVEG 476
++ +IER TQ LPR+ + G
Sbjct: 354 ELFAIER-----LTQALLPRVNLAG 373
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 455 (165.2 bits), Expect = 4.4e-53, Sum P(2) = 4.4e-53
Identities = 113/304 (37%), Positives = 165/304 (54%)
Query: 165 NEKHGRGRN-PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV-YGGTPISHQMRALDYG 221
N K+GR + P+ LVLAPTRELA Q+ E + S S CV YGG I Q+R L+ G
Sbjct: 289 NGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERG 348
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQN--R 277
+V TPGR++D+++R + L ++VLDEAD+ML +GF + I+E+ +P R
Sbjct: 349 CHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLR 408
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+MMFSAT P I+ L +L++ L V VG + + + + + +K S +
Sbjct: 409 QTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKV----VWVEENDKRSFLL 464
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
L+ K +VF +TK+ AD L + + Y C +HGD SQ RE L FR GR
Sbjct: 465 DLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRC 524
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ 454
IL+AT VAARGLD+ NV +I+++LP+ E +VH A + D+
Sbjct: 525 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNI 584
Query: 455 VKSI 458
K +
Sbjct: 585 TKDL 588
Score = 118 (46.6 bits), Expect = 4.4e-53, Sum P(2) = 4.4e-53
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII- 162
L++ + I+ + ++ P+QK + RD++ A+TG+GKT AF +P+L +I
Sbjct: 213 LEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYT 272
Query: 163 --------------KFNEKHGRGRN-PLCLVLAPTRELAKQVEKE 192
+ N K+GR + P+ LVLAPTRELA Q+ E
Sbjct: 273 DGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDE 317
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 132/374 (35%), Positives = 206/374 (55%)
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK- 191
AM GRD+I A+TG+GKTLAF +P L I K + RG P LVL PTRELA+QV++
Sbjct: 163 AMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQ-RGEGPAVLVLLPTRELAQQVQEV 221
Query: 192 --EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+F S L C++GG Q R L+ GVD VV TPGR++D + N+ + ++
Sbjct: 222 SIDFCHSL-GLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYL 280
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
VLDEAD+ML +GF ++ I+ ++ +RQ++MFSAT P +R+L + + K+ ++ VG
Sbjct: 281 VLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLN-VGS 339
Query: 310 SDQKLADGISLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAKS 367
+ I+ + K + + +L+ + K K I+F +TKR AD L AM +
Sbjct: 340 LELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRD 399
Query: 368 -YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSET 426
+ +HGD +Q +R+ L F+ G+ I++ATDVAARGLDV ++ +I+Y+ PN SE
Sbjct: 400 GWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSED 459
Query: 427 FVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMY--NDM 484
+VH +A +T A + K + + + +P+ + Y ++
Sbjct: 460 YVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMANRSYGGSNS 519
Query: 485 GGRSGYGSMRDRQY 498
GR G G + R Y
Sbjct: 520 RGRYGGGGFQKRGY 533
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 556 (200.8 bits), Expect = 7.5e-53, P = 7.5e-53
Identities = 128/354 (36%), Positives = 193/354 (54%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS ++ AL + K PIQ + M GRD+IG A+TG+GKT+AF +P+ I+
Sbjct: 364 ISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD-Q 422
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
G PL +++ PTRELA Q+ KE + + SL +CVYGGT IS Q+ L G +
Sbjct: 423 RPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAE 482
Query: 224 AVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+V TPGR+ID++ N NL V +VV+DEAD+M +GF V I++ + +RQ++
Sbjct: 483 IIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTV 542
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT P + +L + L P+ V + G S + + + I +K + +++
Sbjct: 543 MFSATFPRTMEALARRILSKPVEVQVGGRS--VVCSDVEQHVIVIEEEKKFLKLLEILGH 600
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G I+F + AD L + K SY C LHG I Q R+ ++ F++G +L+A
Sbjct: 601 YQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVA 660
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
T VAARGLDV + L+++Y PN E +VH A T+ QAR
Sbjct: 661 TSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQAR 714
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 127/382 (33%), Positives = 212/382 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L S L + QD+V L+ G ++ PIQ L ++G+D+IG A+TG+GKT AFG+ +L
Sbjct: 10 LAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQM 215
+K+ K R ++ +V+ PTRELA QV KE + A + I + GGTP Q+
Sbjct: 70 NKL---EVKKFRIQS---MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQI 123
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+L++G +VGTPGR+ + + + L L + +VLDEAD+ML +GF ++ I+ R P
Sbjct: 124 GSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+++FSAT P I+S++ + +P+ V + DQ + + ++
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQ-KFFKVGNDDDRLDALRL 242
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L+ + +F TK++ ++A A+ ++ LHGD+ Q R++TL F +
Sbjct: 243 LLLGNQVES--TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSA 300
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ ++DL+I+Y + SE VH A +++D+++ +
Sbjct: 301 SILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYK 360
Query: 455 VKSIERDVGCRFTQ--LPRIAV 474
V +E + T LP +AV
Sbjct: 361 VGLLEDYLEAVITPEPLPSLAV 382
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 119/367 (32%), Positives = 206/367 (56%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S +S+++ AL G +Q V+ A+Q +D++ +++TG+GKT +FGIP+ + +
Sbjct: 7 SNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE-M 65
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+++ E P LVL PTRELA QV+++ + +YG +P + Q L
Sbjct: 66 VEWEEN-----KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
VVGTPGRV+D I++ L+L ++++V+DEAD+ML++GF + VE I++ LP R +
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
M+FSAT+P + L+ Y+ P +++ G + K+ +L+ + EK S++
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH--TLFEVREE--EKLSLLKD- 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+T CI+F +T+ + D + + + +Y C+ +HG + Q R + FR G+F
Sbjct: 236 VTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRY 295
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK 456
L+ATDVAARG+D+ N+ +I+Y++P E++VH AI T + R ++
Sbjct: 296 LVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355
Query: 457 SIERDVG 463
IE +G
Sbjct: 356 EIEAYIG 362
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 119/367 (32%), Positives = 206/367 (56%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S +S+++ AL G +Q V+ A+Q +D++ +++TG+GKT +FGIP+ + +
Sbjct: 7 SNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE-M 65
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+++ E P LVL PTRELA QV+++ + +YG +P + Q L
Sbjct: 66 VEWEEN-----KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
VVGTPGRV+D I++ L+L ++++V+DEAD+ML++GF + VE I++ LP R +
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
M+FSAT+P + L+ Y+ P +++ G + K+ +L+ + EK S++
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEH--TLFEVREE--EKLSLLKD- 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+T CI+F +T+ + D + + + +Y C+ +HG + Q R + FR G+F
Sbjct: 236 VTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRY 295
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK 456
L+ATDVAARG+D+ N+ +I+Y++P E++VH AI T + R ++
Sbjct: 296 LVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355
Query: 457 SIERDVG 463
IE +G
Sbjct: 356 EIEAYIG 362
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 127/382 (33%), Positives = 212/382 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L S L + QD+V L+ G ++ PIQ L ++G+D+IG A+TG+GKT AFG+ +L
Sbjct: 10 LAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQM 215
+K+ K R ++ +V+ PTRELA QV KE + A + I + GGTP Q+
Sbjct: 70 NKL---EVKKFRIQS---MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQI 123
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+L++G +VGTPGR+ + + + L L + +VLDEAD+ML +GF ++ I+ R P
Sbjct: 124 GSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+++FSAT P I+S++ + +P+ V + DQ + + ++
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQ-KFFKVGNDDDRLDALRL 242
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L+ + +F TK++ ++A A+ ++ LHGD+ Q R++TL F +
Sbjct: 243 LLLGNQVES--TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSA 300
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ ++DL+I+Y + SE VH A +++D+++ +
Sbjct: 301 SILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYK 360
Query: 455 VKSIERDVGCRFTQ--LPRIAV 474
V +E + T LP +AV
Sbjct: 361 VGLLEDYLEAVITPEPLPSLAV 382
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 150/409 (36%), Positives = 226/409 (55%)
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL-DKIIK----FNEKHGRGRN- 173
+K P+QK + GRD++ A+TG+GKT F P+L + +K E +G +
Sbjct: 207 TKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSH 266
Query: 174 ---PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV-YGGTPISHQMRALDYGVDAVVGT 228
P LV+APTREL Q+ +E + S S CV YGG I QMR +D G D +V T
Sbjct: 267 KVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVAT 326
Query: 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LP--QNRQSMMFSA 284
PGR+ DL+ R ++L+ ++++VLDEAD+ML +GF + I+E +P ++RQ++MFSA
Sbjct: 327 PGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSA 386
Query: 285 TMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
T P I+ L +LK+ L+V VG + + + I LY EK S+I L++ +
Sbjct: 387 TFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKI-LY---VEDDEKKSVILDLLSAN- 441
Query: 343 KGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
+ G IVFT+TKR AD LA + + + +HGD SQ +RE+ L+AF++G IL+AT
Sbjct: 442 ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATA 501
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERD 461
VAARGLD+PNV +I+Y+LP+ + +VH A + VK +
Sbjct: 502 VAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIEL 561
Query: 462 VGCRFTQLP----RIAVEGGGDMYNDMGGRSGY--GSMRD-RQYADTGF 503
+ ++P +IA EG GGR G G RD R+ ++G+
Sbjct: 562 LSEANQEVPDFLTKIAREGAFGKMTRGGGRGGSSRGPSRDFRRSGNSGW 610
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 125/381 (32%), Positives = 208/381 (54%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L + +++ L+ G +++ PIQ L + G D+IG+ +TG+GKT AFG+ +L+K+
Sbjct: 4 STLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL 63
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRAL 218
+ K R + LVL PTRELA QV +E A + + V GG P+ Q+ +L
Sbjct: 64 ---DVKRFRIQT---LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++G +VGTPGR++D + RN L+LS + +VLDEAD+ML +GF ++ I+E+ P+ RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT P I+S+ + + NP+ V ++ + Y + + + L+
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQ-HFYQLDDDK-SRMQALQLLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
EH K +VF TKR+ ++A + ++ LHGD+ Q R+ TL F + +L
Sbjct: 236 LEH-KPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
+ATDVAARGLD+ +D + +Y + +E +H +A Y DQ ++
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354
Query: 458 IERDVGCRFTQ--LPRIAVEG 476
+E + T LP +++ G
Sbjct: 355 LEEYLDREITSESLPSLSLLG 375
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 125/381 (32%), Positives = 208/381 (54%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L + +++ L+ G +++ PIQ L + G D+IG+ +TG+GKT AFG+ +L+K+
Sbjct: 4 STLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL 63
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRAL 218
+ K R + LVL PTRELA QV +E A + + V GG P+ Q+ +L
Sbjct: 64 ---DVKRFRIQT---LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++G +VGTPGR++D + RN L+LS + +VLDEAD+ML +GF ++ I+E+ P+ RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT P I+S+ + + NP+ V ++ + Y + + + L+
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQ-HFYQLDDDK-SRMQALQLLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
EH K +VF TKR+ ++A + ++ LHGD+ Q R+ TL F + +L
Sbjct: 236 LEH-KPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVL 294
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
+ATDVAARGLD+ +D + +Y + +E +H +A Y DQ ++
Sbjct: 295 VATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIAL 354
Query: 458 IERDVGCRFTQ--LPRIAVEG 476
+E + T LP +++ G
Sbjct: 355 LEEYLDREITSESLPSLSLLG 375
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/372 (33%), Positives = 200/372 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 44 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 103
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 104 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 156
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 157 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 216
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 217 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 273
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 274 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 333
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDVP V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 334 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 393
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 394 EQYYSTQIDEMP 405
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/372 (33%), Positives = 200/372 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 272
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDVP V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 393 EQYYSTQIDEMP 404
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/372 (33%), Positives = 200/372 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 272
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDVP V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 393 EQYYSTQIDEMP 404
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/372 (33%), Positives = 200/372 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 272
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDVP V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 393 EQYYSTQIDEMP 404
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/372 (33%), Positives = 200/372 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 272
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDVP V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 393 EQYYSTQIDEMP 404
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 130/399 (32%), Positives = 217/399 (54%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S ++A L G +++ PIQ L ++G D+I +A+TG+GKT AFGI +L+ I
Sbjct: 11 LPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI-- 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRALDY 220
N ++ + LV+ PTRELA QV KE A + D I V GG Q+ +L++
Sbjct: 69 -NPRYFGCQ---ALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEH 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G +VGTPGR+ +++ +L L + +VLDEAD+ML +GF + +E I+E+ P RQ++
Sbjct: 125 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTL 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT P I+ L +K++++P TV D + Y I+ E+ S + +++
Sbjct: 185 LFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQIEQ-RFYEISPE--ERMSAVTKVL-H 240
Query: 341 HAKGGKCIVFTQTKRDA-DRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
H + C+ F TK+ + + H AK + LHGD+ Q R++ L+ F + ++L+A
Sbjct: 241 HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLD+ +D++I+ EL SE +H A+ + +A + ++IE
Sbjct: 301 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIE 360
Query: 460 R--DVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDR 496
+ + Q+ + +GG + M G +D+
Sbjct: 361 QLQKAPLNWDQVDNLKSQGGAPLQPPMSTLCIAGGRKDK 399
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/372 (33%), Positives = 200/372 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 272
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDVP V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 393 EQYYSTQIDEMP 404
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 126/323 (39%), Positives = 182/323 (56%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ ++ + G K PIQ +QG D+IG A+TGTGKTL++ +P +
Sbjct: 234 ELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSR 293
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
G+ P LVL PTRELA QV E + S L ++C+YGG Q++ + GVD ++
Sbjct: 294 GKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIA 353
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+ DL N +NL + ++VLDEAD+ML +GF + IL + +RQ++M SAT P
Sbjct: 354 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWP 413
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
IR L + YLK P+ V VG D D + I T+ EK S+ + + + K
Sbjct: 414 DTIRQLAHSYLKEPMLV-YVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKV 472
Query: 348 IVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF K AD L+ ++ + + LHGD QS RER L F+ G+ ILIATD+A+RG
Sbjct: 473 IVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRG 532
Query: 407 LDVPNVDLIIHYELPNTSETFVH 429
LDV +V + +Y P E +VH
Sbjct: 533 LDVSDVTHVFNYNFPRNIEEYVH 555
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 126/323 (39%), Positives = 182/323 (56%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ ++ + G K PIQ +QG D+IG A+TGTGKTL++ +P +
Sbjct: 225 ELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSR 284
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
G+ P LVL PTRELA QV E + S L ++C+YGG Q++ + GVD ++
Sbjct: 285 GKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIA 344
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+ DL N +NL + ++VLDEAD+ML +GF + IL + +RQ++M SAT P
Sbjct: 345 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWP 404
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
IR L + YLK P+ V VG D D + I T+ EK S+ + + + K
Sbjct: 405 DTIRQLAHSYLKEPMLV-YVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKV 463
Query: 348 IVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF K AD L+ ++ + + LHGD QS RER L F+ G+ ILIATD+A+RG
Sbjct: 464 IVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRG 523
Query: 407 LDVPNVDLIIHYELPNTSETFVH 429
LDV +V + +Y P E +VH
Sbjct: 524 LDVSDVTHVFNYNFPRNIEEYVH 546
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 139/392 (35%), Positives = 210/392 (53%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE---------KHGRGRN- 173
P+QK + M GRD++ A+TG+GKT F PIL + + + GR R
Sbjct: 211 PVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKA 270
Query: 174 -PLCLVLAPTRELAKQVEKEFHESA-PSLDTICV-YGGTPISHQMRALDYGVDAVVGTPG 230
P L+LAPTREL Q+ E + A S CV YGG I Q+R ++ G D +V TPG
Sbjct: 271 YPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPG 330
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQ--NRQSMMFSATM 286
R++DLI+R ++L +++++LDEAD+ML +GF + I+E +P +RQ++MFSAT
Sbjct: 331 RLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATF 390
Query: 287 PPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG 344
P I+ L +LK+ L+V VG + + + + Y ++K S++ ++ H
Sbjct: 391 PRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE-Y---VEDHDKRSVLLDILHTHGTT 446
Query: 345 GKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
G ++F +TKR AD L+ + + +HGD +Q +RER L FR GR+ IL+AT VA
Sbjct: 447 GLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVA 506
Query: 404 ARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVG 463
ARGLD+PNV +I+Y+LP + +VH A + V+ + +
Sbjct: 507 ARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLK 566
Query: 464 CRFTQLPR----IAVEGGGDMYNDMGGRSGYG 491
++P IA EG G Y GGR G G
Sbjct: 567 EAHQEVPSFLESIAREGSG--YGGRGGRGGRG 596
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 122/373 (32%), Positives = 205/373 (54%)
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVE 190
A+ GRD++G A TG+GKTL + +P I+ N + G P+ L+LAPTRELA Q++
Sbjct: 159 ALSGRDVVGIAETGSGKTLTYCLPA---IVHINAQPLLAPGDGPIVLILAPTRELAVQIQ 215
Query: 191 KEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
E + S + CVYGG P Q+R L GV+ + TPGR+ID+++ NL V +
Sbjct: 216 AEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTY 275
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+VLDEAD+ML +GF + I+ ++ +RQ++M+SAT P +R++ +L++ + V+ +G
Sbjct: 276 LVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVN-IG 334
Query: 309 DSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG----GKCIVFTQTKRDADRLAHAM 364
D I+ S EK + + + + G K ++F TKR AD + +
Sbjct: 335 SLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFL 394
Query: 365 AKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT 423
+ + +HGD Q++R+ L F+ G+ I++ATDVA+RG+DV N+ +++Y+ PN
Sbjct: 395 RQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNN 454
Query: 424 SETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI-------ERDVGCRFTQLPRIAVEG 476
SE ++H +AI +T + ++Q + + ++++ R ++ R G
Sbjct: 455 SEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAKQEIDPRLAEMARYGGGG 514
Query: 477 GGDMYNDMGGRSG 489
GG Y GR G
Sbjct: 515 GGGRYGGYRGRGG 527
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 131/366 (35%), Positives = 202/366 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ I+K+ ++ +L I PIQ A+ G+DMIG+A TG+GKTLAF +P
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 159 DKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS-LDTICVYGGTPISHQM 215
I+ + N K+G G P+ LVLAPTRELA+Q+ +E + S S + C YGG P S Q+
Sbjct: 173 VHILAQPNLKYGDG--PIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQI 230
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV ++ PGR+IDL+++N NL V ++VLDEAD+ML +GF + I++++
Sbjct: 231 YALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRP 290
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+RQ++M+SAT P +++L K P+ V+ VG I +EK +
Sbjct: 291 DRQTLMWSATWPKEVQALAKDLCKEQPIQVN-VGSLTLTACRSIKQEIYLLEEHEKIGNL 349
Query: 335 GQLITEHAKGG-KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
L+ K + IVF +TK++AD + A+ +HGD Q +R L+ F+ G
Sbjct: 350 KSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTG 409
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQA 452
+ I+IATDVA+RGLD+ NV +I+++ PN E +VH ++ T +
Sbjct: 410 KSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKY 469
Query: 453 RQVKSI 458
R K +
Sbjct: 470 RLAKDL 475
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 131/366 (35%), Positives = 202/366 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ I+K+ ++ +L I PIQ A+ G+DMIG+A TG+GKTLAF +P
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 159 DKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS-LDTICVYGGTPISHQM 215
I+ + N K+G G P+ LVLAPTRELA+Q+ +E + S S + C YGG P S Q+
Sbjct: 173 VHILAQPNLKYGDG--PIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQI 230
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV ++ PGR+IDL+++N NL V ++VLDEAD+ML +GF + I++++
Sbjct: 231 YALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRP 290
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+RQ++M+SAT P +++L K P+ V+ VG I +EK +
Sbjct: 291 DRQTLMWSATWPKEVQALAKDLCKEQPIQVN-VGSLTLTACRSIKQEIYLLEEHEKIGNL 349
Query: 335 GQLITEHAKGG-KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
L+ K + IVF +TK++AD + A+ +HGD Q +R L+ F+ G
Sbjct: 350 KSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTG 409
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQA 452
+ I+IATDVA+RGLD+ NV +I+++ PN E +VH ++ T +
Sbjct: 410 KSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKY 469
Query: 453 RQVKSI 458
R K +
Sbjct: 470 RLAKDL 475
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 513 (185.6 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 130/400 (32%), Positives = 210/400 (52%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE-KHGRGRN---PLCLVL 179
P+Q+ + + RD++ A+TG+GKT AF PI+ I+K + RG P ++L
Sbjct: 176 PVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVIL 235
Query: 180 APTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237
+PTRELA Q+ E + + + + YGGTPI Q+R L+ G D +V TPGR+ DL++
Sbjct: 236 SPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLE 295
Query: 238 RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQN-RQSMMFSATMPPWIRSL 293
R +++ ++F+ LDEAD+ML +GF + I+E++ P+ RQ+M+FSAT P I+ L
Sbjct: 296 RARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRL 355
Query: 294 TNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
++ N L V VG S + + + ++ K +VF
Sbjct: 356 AADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFV 415
Query: 352 QTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TKR AD L + + + + +HGD +Q +RE L +F+ GR IL+ATDVAARGLD+P
Sbjct: 416 ETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIP 475
Query: 411 NVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI-------ERDVG 463
+V +++++LPN + +VH A + + A+ +S+ ++V
Sbjct: 476 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVP 535
Query: 464 CRFTQLPRIAVEGGGDMYNDMGGR-SGYGSMRDRQYADTG 502
T+ A GGG + GGR G R+ Y+ G
Sbjct: 536 EWLTRYASRASFGGGKKRS--GGRFGGRDFRREGSYSRGG 573
Score = 40 (19.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 476 GGGDMYNDMG-GRSGYG 491
GG D Y G G GYG
Sbjct: 580 GGSDYYGGGGYGGGGYG 596
Score = 38 (18.4 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 572 TKSDRSSAFGDTGSRQSGRFG 592
T+ ++FG R GRFG
Sbjct: 539 TRYASRASFGGGKKRSGGRFG 559
Score = 37 (18.1 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 476 GGGDMYNDMGGRSGYG 491
GGG +D G GYG
Sbjct: 576 GGGGGGSDYYGGGGYG 591
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 503 (182.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 122/337 (36%), Positives = 188/337 (55%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q+R L+ GV+ +
Sbjct: 85 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 144
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M+SAT P
Sbjct: 145 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 204
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQLITE--HAKG 344
+R L +LK+ + ++ +G + I + + + EK + +L+ E K
Sbjct: 205 KEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDV-EKDEKLIRLMEEIMSEKE 262
Query: 345 GKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
K IVF +TKR D L M + + +HGD SQ +R+ L+ F+ G+ ILIATDVA
Sbjct: 263 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVA 322
Query: 404 ARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK---SIER 460
+RGLDV +V +I+Y+ PN+SE ++H +A +T +QV S+ R
Sbjct: 323 SRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 382
Query: 461 DVGCRFTQLPRIAVEGGGDMYNDMG-GRS-GYGSMRD 495
+ P++ + D G GRS G G M+D
Sbjct: 383 EANQAIN--PKLL-----QLVEDRGSGRSRGRGGMKD 412
Score = 50 (22.7 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGF 503
D Y+ G R G+ + RDR+ D G+
Sbjct: 416 DRYS-AGKRGGFNTFRDRENYDRGY 439
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 452 (164.2 bits), Expect = 1.4e-51, Sum P(3) = 1.4e-51
Identities = 112/304 (36%), Positives = 166/304 (54%)
Query: 165 NEKHGRGRN-PLCLVLAPTRELAKQVEKEFHESA-PSLDTICV-YGGTPISHQMRALDYG 221
N K+ R + P+ LVLAPTRELA Q+ E + A S CV YGG I Q+R L+ G
Sbjct: 305 NGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERG 364
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQ--NR 277
+V TPGR++D+++R + L +++VLDEAD+ML +GF + I+E+ +P +R
Sbjct: 365 CHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSR 424
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+MMFSAT P I+ L +L+ L V VG + + + + + +K S +
Sbjct: 425 QTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKV----VWVEENDKRSFLL 480
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
L+ K +VF +TK+ AD L + + Y C +HGD SQ RE L FR GR
Sbjct: 481 DLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRC 540
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ 454
I++AT VAARGLD+ NV +I+++LP+ E +VH A Y D+ +
Sbjct: 541 PIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNI 600
Query: 455 VKSI 458
K +
Sbjct: 601 TKDL 604
Score = 85 (35.0 bits), Expect = 1.4e-51, Sum P(3) = 1.4e-51
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+D+ + I+ + ++ P+QK + RD++ A+TG+GKT AF +P+L +I
Sbjct: 228 VDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQI 285
Score = 40 (19.1 bits), Expect = 1.4e-51, Sum P(3) = 1.4e-51
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 463 GCR-FTQLPRIAVEGGGDMYNDMGGRS--GYGSMR 494
G R + Q+P GGG+ + + G R+ G+G R
Sbjct: 644 GARDYRQMP-----GGGNTFGNRGARNTGGHGGNR 673
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 126/376 (33%), Positives = 205/376 (54%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ +++A L G + + PIQ L ++G+D+IG+ +TG+GKT AFG+ +L +
Sbjct: 9 LNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNL-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRALDY 220
N K R + LVL PTRELA QV + ++ I V GG P+ Q+ +L++
Sbjct: 67 -NVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G +VGTPGR++D + ++ ++LSE+ +VLDEAD+ML +GF E +E I+ P RQ++
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT P I + +N L + + D Y + S ++ L+
Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQY-FYKVEGSAARDEALETLLL-- 239
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
H + +VF TKR+ +A A+ +S ++ LHGD+ Q +R++ L F + +IL+A
Sbjct: 240 HHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGLDV N+D + +Y+L E VH A ++D ++ +V I+
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359
Query: 460 R--DVGCRFTQLPRIA 473
D+ + LP+ A
Sbjct: 360 EYMDIAIEPSTLPQPA 375
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 127/387 (32%), Positives = 207/387 (53%)
Query: 81 QSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
+ V + + DD + ++L +SQ + A R G K IQ+A L A+QG+D+I
Sbjct: 26 KKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVI 85
Query: 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200
G A TG+GKT AF IP+L ++ + CLVL PTRELA Q+ ++F +
Sbjct: 86 GLAETGSGKTGAFAIPVLQSLLDHPQAF------FCLVLTPTRELAFQIGQQFEALGSGI 139
Query: 201 DTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQM 257
I + GG ++ Q AL +V TPGR++D ++ NL ++F+++DEAD++
Sbjct: 140 GLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRI 199
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
L++ F +++ IL+ +P+ R++ +FSATM + L L++P V + S K D
Sbjct: 200 LNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSV--SSRYKTVDN 257
Query: 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGD 376
+ + I K + + L+ EHA G IVF T ++A + + PLHG
Sbjct: 258 LKQHYIFVPNKYKETYLVYLLNEHA-GNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQ 316
Query: 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXX 436
+SQ +R +L+ F+ IL+ TDVAARGLD+P+VD++I+Y++P+ S+ +VH
Sbjct: 317 MSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTAR 376
Query: 437 XXXXXSAILIYTDQQARQVKSIERDVG 463
AI + T + IE ++G
Sbjct: 377 AGRSGIAITVVTQYDVEAYQKIEANLG 403
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 119/374 (31%), Positives = 207/374 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L + ++ L+ GI+ PIQ+ + +QG+D++ A+TGTGKT AFG+P++
Sbjct: 6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
Query: 159 DKIIKFN-EKHGRGRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISHQM 215
+ I+ ++ + LVL PTRELA+QV + + L + VYGGT + Q+
Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L GVD ++ TPGR++D +L L +V+ +VLDEAD+ML +GF D++ +L RL
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++ FSAT I+++ + +++P+ V + + A+ + K ++
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNST--AETVQQMVYPVDKKRKRELLS 243
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
LI + +VFT+T++ +D LA + ++GD SQ R++ L F+ G+
Sbjct: 244 YLIGSK-NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ 454
LIATDVAARGLD+ ++ +++Y++P +E +VH A+ + + + Q
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
Query: 455 VKSIERDVGCRFTQ 468
+++IER + R Q
Sbjct: 363 LEAIERLLNTRLPQ 376
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 119/374 (31%), Positives = 207/374 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L + ++ L+ GI+ PIQ+ + +QG+D++ A+TGTGKT AFG+P++
Sbjct: 6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
Query: 159 DKIIKFN-EKHGRGRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISHQM 215
+ I+ ++ + LVL PTRELA+QV + + L + VYGGT + Q+
Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L GVD ++ TPGR++D +L L +V+ +VLDEAD+ML +GF D++ +L RL
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++ FSAT I+++ + +++P+ V + + A+ + K ++
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNST--AETVQQMVYPVDKKRKRELLS 243
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
LI + +VFT+T++ +D LA + ++GD SQ R++ L F+ G+
Sbjct: 244 YLIGSK-NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ 454
LIATDVAARGLD+ ++ +++Y++P +E +VH A+ + + + Q
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
Query: 455 VKSIERDVGCRFTQ 468
+++IER + R Q
Sbjct: 363 LEAIERLLNTRLPQ 376
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 124/368 (33%), Positives = 204/368 (55%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++++I+ A+ G + PIQ+ + + G D+ G A+TGTGKT AF +P++ ++ +
Sbjct: 11 LAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRL---S 67
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICVY-GGTPISHQMRALDYGVD 223
R R P CL+L PTRELA QV + F + L T+ + GG Q L GVD
Sbjct: 68 TGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVD 127
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
++ TPGR++D R L + V+ +++DEAD+ML +GF D+E I +LP NRQ+++FS
Sbjct: 128 VLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFS 187
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---KPSIIGQLI-T 339
AT P I+ L + K+P +++ + + A+ IS + + + + + + ++I
Sbjct: 188 ATFPTDIQRLAKTFQKDPKKIEVTRPA--QTAETISQFVVKLPTNDGKARRTALRRVIEA 245
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K G IVF K + D +A ++ K ++ P+HGD+ QS R TL FRDG+ +L+
Sbjct: 246 TNVKNG--IVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLV 303
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ---- 454
A+DVAARGLD+P+V + ++ P E +VH + + T +
Sbjct: 304 ASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFV 363
Query: 455 VKSIERDV 462
VK I++DV
Sbjct: 364 VKMIKKDV 371
Score = 174 (66.3 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 48/149 (32%), Positives = 69/149 (46%)
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETF 427
++ P+HGD+ QS R TL FRDG+ +L+A+DVAARGLD+P+V + ++ P E +
Sbjct: 273 HDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDY 332
Query: 428 VHXXXXXXXXXXXXSAILIYTDQQARQ----VKSIERDV------GC--RFTQLP----R 471
VH + + T + VK I++DV G LP R
Sbjct: 333 VHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMIKKDVPEFMPEGLLEELETLPPEEKR 392
Query: 472 IAVEGGGDMYNDMGGRSGYGSMRDRQYAD 500
GG D GGRS G + +D
Sbjct: 393 DRKTGGRGGDRDRGGRSARGRTERTEQSD 421
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 127/384 (33%), Positives = 206/384 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ DE D +++ +++ + G + IQ+ + P ++G D+I +A++GTGKT
Sbjct: 17 ESNYDEITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKT 76
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I L K+ N K + L++APTRELA+Q++K ++ C GG
Sbjct: 77 ATFSISALQKLDP-NVKACQA-----LIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGG 130
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + M AL G VVGTPGR+ D+I+R L +++ +LDEAD+MLS GF E +
Sbjct: 131 TAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYD 190
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
I + LPQ+ Q ++ SATMP + +T K++++P+ + LV + L +GI + IA
Sbjct: 191 IFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRI-LVKKQELTL-EGIKQFYIAVEKE 248
Query: 329 E-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
E K + L E + ++F T+R D L + A+ + +HGD+ Q+QR+ +
Sbjct: 249 EWKLDTLSDLY-ETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIM 307
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILI 446
FR G +LIATD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 308 KEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINF 367
Query: 447 YTDQQARQVKSIERDVGCRFTQLP 470
T R ++ IE+ + ++P
Sbjct: 368 VTADDVRMMREIEQFYSTQIEEMP 391
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 136/411 (33%), Positives = 216/411 (52%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP-ILDKIIKFNEK 167
D++ + + G SK PIQ +QG DMIG A+TGTGKTLAF +P ++ + +
Sbjct: 293 DMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPR 352
Query: 168 HGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
RG + LVLAPTRELA Q+E E + S + +CVYGG + Q+ L+ G + ++
Sbjct: 353 GTRGGANV-LVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQISDLERGAEIII 411
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
TPGR+ DLI N +++S + ++VLDEAD+ML +GF + ++ + +RQ++M SAT
Sbjct: 412 CTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATW 471
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLITEHAKGG 345
PP +R L Y+KNP+ V VG D + + + +K + I + +
Sbjct: 472 PPGVRRLAQSYMKNPIQV-CVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTD 530
Query: 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K I+F K AD L+ + + + +HG+ Q RE+ ++ + G IL+ATDVA+
Sbjct: 531 KIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVAS 590
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI------ 458
RGLD+ ++ +I+Y+ P+ E +VH ++I +T + K +
Sbjct: 591 RGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQE 650
Query: 459 -ERDV-------GCRFTQLP-RIAVEGGGDMYNDMGGRSGYGSMRDRQYAD 500
E++V RF + + A EGGG + GGR G G R+ D
Sbjct: 651 AEQEVPDELHNMARRFKAMKDKRAAEGGG--FGGRGGRFGGGRGGGRRNFD 699
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 125/388 (32%), Positives = 215/388 (55%)
Query: 81 QSAVDDYVAYDDSSKD-EGLD-------ISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
QS ++ + YD+ + + GLD + + +Q + +++ G SKL P+QK +
Sbjct: 142 QSGIN-FDKYDECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPV 200
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN---EKHGRGRNPLCLVLAPTRELAKQV 189
GRD++ A+TG+GKT AF +PI+D+++K + + P C+++APTREL Q+
Sbjct: 201 IQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQI 260
Query: 190 EKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
E + + + +YGGT H +R + G + + TPGR++D+I++ ++L EV+
Sbjct: 261 FLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVK 320
Query: 248 FVVLDEADQMLSVGFAEDVEVILE--RLPQN--RQSMMFSATMPPWIRSLTNKYLKNPLT 303
++VLDEAD+ML +GF D++ ++ +P RQ++MFSAT P ++ L ++LK
Sbjct: 321 YLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYI 380
Query: 304 VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA 363
++G++ +D + ++ +I I + G + +VF TK+ AD LA
Sbjct: 381 FLVIGNTCGACSDVQQNILQVPRLSKRDKLIE--ILQSTGGERTMVFVDTKKKADYLAAF 438
Query: 364 MAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN 422
+ + + +HGD Q +RE L FR G+ IL+AT VA+RGLD+ NV +I+++LPN
Sbjct: 439 LCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPN 498
Query: 423 TSETFVHXXXXXXXXXXXXSAILIYTDQ 450
T E +VH A+ + DQ
Sbjct: 499 TIEDYVHRIGRTGRCGNTGKAVSFFDDQ 526
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 125/388 (32%), Positives = 215/388 (55%)
Query: 81 QSAVDDYVAYDDSSKD-EGLD-------ISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
QS ++ + YD+ + + GLD + + +Q + +++ G SKL P+QK +
Sbjct: 142 QSGIN-FDKYDECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPV 200
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN---EKHGRGRNPLCLVLAPTRELAKQV 189
GRD++ A+TG+GKT AF +PI+D+++K + + P C+++APTREL Q+
Sbjct: 201 IQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQI 260
Query: 190 EKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
E + + + +YGGT H +R + G + + TPGR++D+I++ ++L EV+
Sbjct: 261 FLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVK 320
Query: 248 FVVLDEADQMLSVGFAEDVEVILE--RLPQN--RQSMMFSATMPPWIRSLTNKYLKNPLT 303
++VLDEAD+ML +GF D++ ++ +P RQ++MFSAT P ++ L ++LK
Sbjct: 321 YLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYI 380
Query: 304 VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA 363
++G++ +D + ++ +I I + G + +VF TK+ AD LA
Sbjct: 381 FLVIGNTCGACSDVQQNILQVPRLSKRDKLIE--ILQSTGGERTMVFVDTKKKADYLAAF 438
Query: 364 MAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN 422
+ + + +HGD Q +RE L FR G+ IL+AT VA+RGLD+ NV +I+++LPN
Sbjct: 439 LCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPN 498
Query: 423 TSETFVHXXXXXXXXXXXXSAILIYTDQ 450
T E +VH A+ + DQ
Sbjct: 499 TIEDYVHRIGRTGRCGNTGKAVSFFDDQ 526
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 140/412 (33%), Positives = 221/412 (53%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN-----EKH 168
LAR +K P+QK + GRD++ A+TG+GKT F P+L + K E
Sbjct: 159 LAR--FTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQ 216
Query: 169 G----RGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV-YGGTPISHQMRALDYGV 222
G R P +++APTRELA Q+ E + + S CV YGG+PI +Q+R ++ G
Sbjct: 217 GSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGC 276
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN----RQ 278
D +V TPGR+ DL++R ++L+ V+++VLDEAD+ML +GF + I+E RQ
Sbjct: 277 DLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQ 336
Query: 279 SMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
++MFSAT P I+ L +L + L+V VG + + + + LY +K S +
Sbjct: 337 TLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKV-LY---VENQDKKSALLD 392
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L++ + G ++F +TKR AD+L + +++ +HGD +QS+RER L+AFR G
Sbjct: 393 LLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 451
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
+L+AT VAARGLD+PNV +I+Y+LP+ + +VH A + + + V
Sbjct: 452 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRS-----GYGSMRDRQYADTG 502
K + + ++P + M + G RS G+G +R Y G
Sbjct: 512 KGLHEILTEANQEVPSFLKDA---MMSAPGSRSNSRRGGFGRNNNRDYRKAG 560
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 127/384 (33%), Positives = 204/384 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+++ DE +D +++ +++ + G + IQ+ + P + RD++ +A++GTGKT
Sbjct: 11 ETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKT 70
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I +L KI + K + L+LAPTRELA+Q++K ++ C GG
Sbjct: 71 ATFSISVLQKI-DTSLKQCQA-----LILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + M AL GV VVGTPGRV D+I+R AL VQ VLDEAD+MLS GF + +
Sbjct: 125 TLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYD 184
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
I + LP Q ++ SATMP + +T K++++P+ + LV D+ +GI + +A
Sbjct: 185 IFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRI-LV-KKDELTLEGIKQFYVAVEKE 242
Query: 329 E-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTL 386
E K + L E + ++F T+R D L + + + +HGD+ Q+QR+ +
Sbjct: 243 EWKLDTLCDLY-ETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLM 301
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILI 446
FR G ILI TD+ ARG+DV V L+I+Y+LP E ++H +I
Sbjct: 302 HEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINF 361
Query: 447 YTDQQARQVKSIERDVGCRFTQLP 470
T+ R ++ IE+ ++P
Sbjct: 362 VTNDDVRMMREIEQFYNTHIEEMP 385
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 129/401 (32%), Positives = 211/401 (52%)
Query: 75 IAWQHAQSAVDDYVAYDDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPA 133
+A ++AQ+ V ++ S E + + +++ ++++ + G K IQ+ + P
Sbjct: 1 MARKNAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPI 60
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
++GRD+I +A++GTGKT F I IL + + R LCL +PTRELA Q++K
Sbjct: 61 VKGRDVIAQAQSGTGKTATFSISILQSL----DTTLRETQVLCL--SPTRELAVQIQKVI 114
Query: 194 HESAPSLDTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
++ C GGT + +R LDYG V GTPGRV D+IKR L ++ +VL
Sbjct: 115 LALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVL 174
Query: 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
DEAD+ML+ GF E + + LP Q ++ SAT+P I +T+K++ +P+ + LV D
Sbjct: 175 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRI-LV-KRD 232
Query: 312 QKLADGISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YN 369
+ +GI + +A E K + L + + ++F TKR D L M ++ +
Sbjct: 233 ELTLEGIKQFFVAVEREEWKFDTLCDLY-DTLTITQAVIFCNTKRKVDWLTEKMREANFT 291
Query: 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
+HGD+ Q +R+ + FR G+ +LI TDV ARG+DV V L+I+Y+LPN E ++H
Sbjct: 292 VSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 351
Query: 430 XXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLP 470
AI R ++ IE+ + ++P
Sbjct: 352 RIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMP 392
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 122/334 (36%), Positives = 184/334 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S + ++ A+ + IQK + + D++ RA+TGTGKT AF +PIL
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICV-YGGTPISHQMR 216
++I R LVL PTRELA+QV K F D TI + YGG Q+
Sbjct: 65 QQLISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQIS 121
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD ++ TPGR++DL++ +++LS ++ +V DEAD+ML +GF E+++ I + LP+
Sbjct: 122 ELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+Q+++FSAT I ++ L P V++ D K AD + K +
Sbjct: 182 KQTLLFSATFADDIYKMSKNILVEPKMVEI--DEKNKAADDVEQLVYGVDADRKRELTSF 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + +VFT+TK+ AD LA M K +HGD SQ RE+ L F++G+
Sbjct: 240 LIGSR-NWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVR 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
LIATDVAARG+D+ + +I+YELP +E +VH
Sbjct: 299 ALIATDVAARGIDIKGLSHVINYELPYNAEDYVH 332
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 122/334 (36%), Positives = 184/334 (55%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S + ++ A+ + IQK + + D++ RA+TGTGKT AF +PIL
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICV-YGGTPISHQMR 216
++I R LVL PTRELA+QV K F D TI + YGG Q+
Sbjct: 65 QQLISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQIS 121
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD ++ TPGR++DL++ +++LS ++ +V DEAD+ML +GF E+++ I + LP+
Sbjct: 122 ELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+Q+++FSAT I ++ L P V++ D K AD + K +
Sbjct: 182 KQTLLFSATFADDIYKMSKNILVEPKMVEI--DEKNKAADDVEQLVYGVDADRKRELTSF 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + +VFT+TK+ AD LA M K +HGD SQ RE+ L F++G+
Sbjct: 240 LIGSR-NWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVR 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
LIATDVAARG+D+ + +I+YELP +E +VH
Sbjct: 299 ALIATDVAARGIDIKGLSHVINYELPYNAEDYVH 332
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 124/372 (33%), Positives = 198/372 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F + +L + I
Sbjct: 38 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI 97
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 98 QVRETQA-------LILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 150
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q
Sbjct: 151 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 210
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 211 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 267
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 268 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 327
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDV V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 328 STDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 387
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 388 EQYYSTQIDEMP 399
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 128/324 (39%), Positives = 181/324 (55%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ + + G K PIQ +QG D+IG A+TGTGKTL++ +P I
Sbjct: 251 EVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDS-QPVL 309
Query: 169 GRGRN-PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
R RN P LVL PTRELA QV+ E E S L ++C+YGG Q++ L G D ++
Sbjct: 310 QRARNGPGMLVLTPTRELALQVDAECSEYSYRGLKSVCIYGGGDRDGQIKDLSKGADIII 369
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
TPGR+ DL N + L + ++VLDEAD+ML +GF + IL + +RQ++M SAT
Sbjct: 370 ATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATW 429
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P +R L YLK P+ V VG D ++ I T+ EK S I I + K
Sbjct: 430 PYAVRRLAQSYLKEPMIV-YVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKDK 488
Query: 347 CIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F K AD L+ + + + E LHG+ QS RER L +F+ G+ ILIATD+A+R
Sbjct: 489 VIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASR 548
Query: 406 GLDVPNVDLIIHYELPNTSETFVH 429
GLDV +V + +Y+ P E +VH
Sbjct: 549 GLDVHDVTHVYNYDFPRNIEEYVH 572
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 534 (193.0 bits), Expect = 2.6e-50, P = 2.6e-50
Identities = 129/365 (35%), Positives = 192/365 (52%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
GL I LD+ + + G + L IQ + M GRD+IG A+TG+GKT+AF IP+
Sbjct: 547 GLGIQTLDV-------IDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPM 599
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+ IK P+ L++ PTRELA Q+ K+ A +L +C YGG PI Q+
Sbjct: 600 F-RHIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI 658
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
L G + +V TPGR+IDL+ NA NL V +VVLDEAD+M +GF V IL
Sbjct: 659 AELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSN 718
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATSMYEK 330
+ +RQ+++FSAT P + +L K L P+ + + G S ++ + + +
Sbjct: 719 VRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRL 778
Query: 331 PSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSA 388
++G L T+ + + ++F + AD L M K Y C +HG Q R+ T+
Sbjct: 779 LELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIED 838
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYT 448
F+ G F +LIAT VAARGLDV + L+++Y+ PN E +VH +A+ T
Sbjct: 839 FKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLT 898
Query: 449 DQQAR 453
+ Q R
Sbjct: 899 EDQER 903
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 126/365 (34%), Positives = 200/365 (54%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L++ D++ ++ +K PIQ + A++G+D+IG A+TG+GKT AF IPIL +
Sbjct: 127 ELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLW 186
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
+ + LVLAPTREL Q++ F S+ L + C+ GG + Q R L
Sbjct: 187 HAQQPY------FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 240
Query: 221 GVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+V TPGR++D ++ +L ++++V+DEAD++L + F ++ IL+ +P R +
Sbjct: 241 KPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTT 300
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSATM I L L NP+ V + S + AD + + + K +I+ L+
Sbjct: 301 YLFSATMTNKIEKLQRASLHNPVRVAV--SSKYQTADNLVQSMMLVNDGYKNTILIHLLN 358
Query: 340 EHAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E G IVFT+T A R A A +N PLHG +SQSQR +L+ F+ + NIL+
Sbjct: 359 EFM-GKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 417
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
ATDVAARGLD+P+VD++I+Y++P S+ ++H +I + T I
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Query: 459 ERDVG 463
E +G
Sbjct: 478 ESVLG 482
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 125/323 (38%), Positives = 180/323 (55%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I+ ++ R G K PIQ +QG D+IG A+TGTGKTL++ +P I
Sbjct: 211 EIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSR 270
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVG 227
+ P LVL PTRELA QVE E + L ++C+YGG Q++ + GVD ++
Sbjct: 271 KQRNGPGMLVLTPTRELALQVEAECSKYLYKGLKSVCIYGGGNRKGQIQDVTKGVDIIIA 330
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+ DL N +NL + ++VLDEAD+ML +GF + IL + +RQ++M +A+ P
Sbjct: 331 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWP 390
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
R L YLK P+ V VG D + + I T+ EK S++ + + + K
Sbjct: 391 DSTRRLAQSYLKQPMIV-YVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQSLSPKDKV 449
Query: 348 IVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF K AD L+ ++ + + LHGD QS R++ L FR GR ILIATD+AARG
Sbjct: 450 IVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLAARG 509
Query: 407 LDVPNVDLIIHYELPNTSETFVH 429
LDV +V + +Y P E +VH
Sbjct: 510 LDVSDVTHVYNYNFPRNIEEYVH 532
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 121/360 (33%), Positives = 191/360 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ ++ L ++G PIQ L + G+D+ G+A+TGTGKTLAF + ++
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75
Query: 166 EKHGRGRN-PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGV 222
GR P +++APTRELA Q+ + ++ L YGG Q+ L GV
Sbjct: 76 AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSM 280
D ++GT GR+ID K+ NL+ +Q VVLDEAD+M +GF +D+ + R+P+ +R +M
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT+ ++ L +++ NP V V + +QK I S K +++ LI E
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHV--VVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEE 253
Query: 341 HAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ I+F TK +++ AH A ++ L GD+ Q +RER L F G +IL+A
Sbjct: 254 EWPD-RAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVA 312
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGL +P V + +Y+LP+ E +VH +I ++ A + +IE
Sbjct: 313 TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIE 372
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 121/360 (33%), Positives = 191/360 (53%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ ++ L ++G PIQ L + G+D+ G+A+TGTGKTLAF + ++
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75
Query: 166 EKHGRGRN-PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGV 222
GR P +++APTRELA Q+ + ++ L YGG Q+ L GV
Sbjct: 76 AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSM 280
D ++GT GR+ID K+ NL+ +Q VVLDEAD+M +GF +D+ + R+P+ +R +M
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT+ ++ L +++ NP V V + +QK I S K +++ LI E
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHV--VVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEE 253
Query: 341 HAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ I+F TK +++ AH A ++ L GD+ Q +RER L F G +IL+A
Sbjct: 254 EWPD-RAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVA 312
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TDVAARGL +P V + +Y+LP+ E +VH +I ++ A + +IE
Sbjct: 313 TDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIE 372
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 126/393 (32%), Positives = 204/393 (51%)
Query: 85 DDYVAYD-DSSKDEGL--DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
DD + +SS++ + K+ + +D++ + G K IQ+ + ++ RD+I
Sbjct: 9 DDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIA 68
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
+A++GTGKT F I +L + + R L+L+PTRELA Q++K ++
Sbjct: 69 QAQSGTGKTATFSISVLQSL------DTQVRETQALILSPTRELAVQIQKVVLALGDYMN 122
Query: 202 TIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
C GGT + +R LDYG V GTPGRV D+I+R L ++ +VLDEAD+ML+
Sbjct: 123 VQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLN 182
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
GF E + I LP Q ++ SAT+P I +T+K++ +P+ + LV D+ +GI
Sbjct: 183 KGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRI-LV-KRDELTLEGIK 240
Query: 320 LYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDI 377
+ +A E K + L + + ++F T+R D L M ++ + +HGD+
Sbjct: 241 QFFVAVDREEWKFDTLIDLY-DTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDM 299
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXX 437
Q R+ + FR G +LI+TDV ARGLDVP V L+I+Y+LPN E ++H
Sbjct: 300 EQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRF 359
Query: 438 XXXXSAILIYTDQQARQVKSIERDVGCRFTQLP 470
AI R ++ IE+ + ++P
Sbjct: 360 GRKGVAINFVKQDDVRILRDIEQYYSTQIDEMP 392
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 126/373 (33%), Positives = 198/373 (53%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++ K E + L + I+ A + G +K IQ+ + A++GRD+IG A+TG+GKT
Sbjct: 111 EEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKT 170
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGG 208
AF IP+L K+++ + CL LAPTRELA Q+ +F+ S + T + GG
Sbjct: 171 AAFVIPVLQKLLEAPQ------GLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGG 224
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAEDVE 267
Q AL VVG+PGRV+ ++ NL +++ ++DEAD++ S F E+V
Sbjct: 225 IDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVN 284
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL+ +P+ R + +FSATM + L L NP+ V V Q + + Y
Sbjct: 285 NILKVIPKERNTYLFSATMTSKVAKLQRASLVNPVKVQ-VASKYQTVDTLLQQYLFVPFK 343
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTL 386
Y K + ++ E A G I+FT T + ++A + + P++GD+ Q +R +L
Sbjct: 344 Y-KDCYLAYILNELA-GNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASL 401
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILI 446
+ F+ G +IL+ATDVAARGLD+P+VDL+I+Y++P S+ +VH AI I
Sbjct: 402 NKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITI 461
Query: 447 YTDQQARQVKSIE 459
T + IE
Sbjct: 462 VTQYDVEMYQRIE 474
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 126/391 (32%), Positives = 222/391 (56%)
Query: 91 DDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
+++++DE + S+L++ +++ A SK PIQ + PA++G D+IG A+TG+GK
Sbjct: 72 ENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGK 131
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYG 207
T AF IPIL+++ E + C +LAPTRELA+Q+++ F S + + C+ G
Sbjct: 132 TAAFAIPILNRLWHDQEPYYA-----C-ILAPTRELAQQIKETFDSLGSLMGVRSTCIVG 185
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAEDV 266
G + Q R L ++ TPGR++D ++ +L +++F+V+DEAD++L + F +
Sbjct: 186 GMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVL 245
Query: 267 EVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ IL+ +P Q R + +FSATM I L L NP+ V + Q + + +
Sbjct: 246 DRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKC-AVSNKYQTVDTLVQTLMVVP 304
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
+ +I L+ E G I+FT+TK +A+RL+ ++ LHGD++Q+QR
Sbjct: 305 GGLKNTYLI-YLLNEFI-GKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMG 362
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+L F+ G+ +IL+ATDVAARGLD+P+VD++++Y++P S++++H +I
Sbjct: 363 SLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSI 422
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
+ + + IE +G +LP+ +V+
Sbjct: 423 SLVSQYDLELILRIEEVLG---KKLPKESVD 450
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 524 (189.5 bits), Expect = 4.9e-50, P = 4.9e-50
Identities = 116/335 (34%), Positives = 188/335 (56%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAP 181
PIQ A++GRD+IG A+TG+GKTLAF +P I+ N + P+ LVLAP
Sbjct: 409 PIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLP---SIVHINAQPVLREDDGPIVLVLAP 465
Query: 182 TRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
TRELA Q+++E ++ + CVYGG Q+ AL GV+ V+ TPGR+ID+++
Sbjct: 466 TRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESG 525
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
NL V ++VLDEAD+ML +GF + I+ ++ +RQ++MFSAT P +++L + +L
Sbjct: 526 KTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLT 585
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
+ + V +G ++ + +EK + + + K IVF +T++ D
Sbjct: 586 DHIQVH-IGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDD 644
Query: 360 LAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
L + S + +HG+ SQ +R+ LS F++G I+IATDVA+RGLD+ ++ +++Y
Sbjct: 645 LQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNY 704
Query: 419 ELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
+ PNT E ++H + + T AR
Sbjct: 705 DFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNAR 739
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 524 (189.5 bits), Expect = 5.3e-50, P = 5.3e-50
Identities = 120/348 (34%), Positives = 195/348 (56%)
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE- 166
+ ++ A+ + ++ PIQ + A+ GRD+IG A+TG+GKT AF P+L ++ +
Sbjct: 278 EQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQL 337
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDA 224
K G G P+ L+LAPTREL+ Q+ E + +L+ +C YGG Q +AL+ G +
Sbjct: 338 KPGDG--PIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEI 395
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
+V TPGR+ID++K A NL V F+VLDEAD+M +GF V I + +RQ +MFSA
Sbjct: 396 IVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSA 455
Query: 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQLITEHAK 343
T I L L +P+ + + GD ++ D S+Y + + ++ L+ +
Sbjct: 456 TFKKRIERLARDVLSDPVRI-VQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLV-KFLS 513
Query: 344 GGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G ++F K DA+ +++ + K YNC LHGD+ Q+ R + ++ F+ +IL+ATDV
Sbjct: 514 EGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDV 573
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQ 450
AARGLD+P++ +++Y+ ET H +A + TD+
Sbjct: 574 AARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDK 621
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 531 (192.0 bits), Expect = 5.3e-50, P = 5.3e-50
Identities = 127/364 (34%), Positives = 199/364 (54%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++ I+ + + K PIQ L M GRD IG A+TG+GKTL F +P+L + IK
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML-RHIKDQ 594
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV--YGGTPISHQMRALDYGVD 223
G P+ LV+APTREL +Q+ + + + L CV YGG+ ++ Q+ L G +
Sbjct: 595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654
Query: 224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
VV TPGR+ID++ ++ NL V F+V+DEAD+M +GF + I++ + RQ++
Sbjct: 655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV 714
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT P + +L K L P+ + + G S D L + ++ +L+ E
Sbjct: 715 LFSATFPRQVETLARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRFLRLL-ELLGE 772
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
++ GK +VF Q++ D L M KS Y C LHG Q+ RE T+S F++ N+LIA
Sbjct: 773 WSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIA 832
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQ----V 455
T VAARGLDV ++L+++++ PN E +VH A+ ++ A+ V
Sbjct: 833 TSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLV 892
Query: 456 KSIE 459
K++E
Sbjct: 893 KALE 896
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 510 (184.6 bits), Expect = 5.3e-50, Sum P(2) = 5.3e-50
Identities = 135/356 (37%), Positives = 205/356 (57%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D+ +I ++ VA LAR K P+QK + + GRD++ A+TG+GKT AF +PIL+
Sbjct: 299 DVQLTEIIRNNVA-LAR--YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355
Query: 160 KIIKFNE--------KHGRGRN-PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGG 208
++ + ++ R + PL LVLAPTRELA Q+ +E + A + +YGG
Sbjct: 356 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 415
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
S QMR LD G +V TPGR+ D+I R + L ++F+VLDEAD+ML +GF +
Sbjct: 416 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 475
Query: 269 ILERL---PQN-RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYS 322
I+E+L P RQ++MFSAT P I+ L + +L N L V VG + + + I L+
Sbjct: 476 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTI-LW- 533
Query: 323 IATSMYE--KPSIIGQLIT------EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373
+YE K S + L++ E+ K ++F +TK+ AD L + + ++ +
Sbjct: 534 ----VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSI 589
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
HGD +Q +RE L FR G IL+AT VAARGLD+P+V +I+++LP+ E +VH
Sbjct: 590 HGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVH 645
Score = 37 (18.1 bits), Expect = 5.3e-50, Sum P(2) = 5.3e-50
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 571 STKSDRSSAFGDTGSRQSGRFG 592
S D SS G G++++GR G
Sbjct: 687 SFMEDMSSDRGHGGAKRAGRGG 708
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 124/323 (38%), Positives = 177/323 (54%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ + + G K PIQ +QG D+IG A+TGTGKTL + +P ++
Sbjct: 252 EVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLK 311
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
G+ P LVL PTRELA QVE E + S L ++CVYGG Q+ L GVD ++
Sbjct: 312 GQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIA 371
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+ DL N +NL + ++VLDEAD+ML +GF + IL + +RQ++M SAT P
Sbjct: 372 TPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWP 431
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
+ L YLK P+ V VG D + I T+ EK S + + + K
Sbjct: 432 HSVHRLAQSYLKEPMIV-YVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKV 490
Query: 348 IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF K AD L+ + + + E LHGD Q RE+ L F+ G+ ILIATD+A+RG
Sbjct: 491 IVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRG 550
Query: 407 LDVPNVDLIIHYELPNTSETFVH 429
LDV +V + +++ P E +VH
Sbjct: 551 LDVHDVTHVYNFDFPRNIEEYVH 573
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 127/327 (38%), Positives = 182/327 (55%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP----ILDKIIKF 164
+++ + + G K PIQ +QG D+IG A+TGTGKTL++ +P + + + F
Sbjct: 251 EVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVF 310
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVD 223
+ + R P LVL PTRELA QVE E + S L ++CVYGG Q++ L GVD
Sbjct: 311 SLQRARN-GPGMLVLTPTRELALQVEAECSKYSYKGLKSVCVYGGGDRDGQIKDLLKGVD 369
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
++ TPGR+ DL N + L + ++VLDEAD+ML +GF + IL + +RQ++M S
Sbjct: 370 IIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTS 429
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT P +R L YLK P+ V VG D + I T+ EK S I I +
Sbjct: 430 ATWPYAVRRLAQSYLKEPMIV-YVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSP 488
Query: 344 GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
K I+F K AD L+ + + + E LHG+ Q RER L F+ G+ ILIATD+
Sbjct: 489 KDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDL 548
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVH 429
A+RGLDV +V + +Y+ P E +VH
Sbjct: 549 ASRGLDVHDVTHVYNYDFPRNIEEYVH 575
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 126/393 (32%), Positives = 204/393 (51%)
Query: 85 DDYVAYD-DSSKDEGL--DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
DD + +SS++ + K+ + +D++ + G K IQ+ + ++ RD+I
Sbjct: 9 DDMATVEFESSEEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIA 68
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
+A++GTGKT F I +L + + R L+L+PTRELA Q++K ++
Sbjct: 69 QAQSGTGKTATFSISVLQSL------DTQVRETQALILSPTRELAVQIQKVVLALGDYMN 122
Query: 202 TIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
C GGT + +R LDYG V GTPGRV D+I+R L ++ +VLDEAD+ML+
Sbjct: 123 VQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLN 182
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
GF E + I LP Q ++ SAT+P I +T+K++ +P+ + LV D+ +GI
Sbjct: 183 KGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRI-LV-KRDELTLEGIK 240
Query: 320 LYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDI 377
+ +A E K + L + + ++F T+R D L M ++ + +HGD+
Sbjct: 241 QFFVAVDREEWKFDTLIDLY-DTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDM 299
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXX 437
Q R+ + FR G +LI+TDV ARGLDVP V L+I+Y+LPN E ++H
Sbjct: 300 EQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRF 359
Query: 438 XXXXSAILIYTDQQARQVKSIERDVGCRFTQLP 470
AI R ++ IE+ + ++P
Sbjct: 360 GRKGVAINFVKQDDVRILRDIEQYYSTQIDEMP 392
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 126/381 (33%), Positives = 203/381 (53%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S +V +A+ G K IQ + +QGRD+I A+TGTGKT +F +PIL
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EK-EFHESAPSLDTICVYGGTPISHQMR 216
+K+ + + R + L+L PTRELA QV EK E + L ++ V+GG Q +
Sbjct: 61 EKLRQGQTQ--RKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD +V TPGR++DL + A+ E++ VVLDEAD+ML +GF E + I++ LP
Sbjct: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSAT+ +R L +++P + + + K IS + I K +++
Sbjct: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASK--SNISQWLITVDKDTKSALLSH 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI E + + ++F +TK A +L + K + E H SQ+ R + L F+ G+
Sbjct: 237 LINEQ-QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIK 295
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
L+AT VAARG+D+ + +++Y+LP ++ +VH AI + + +
Sbjct: 296 YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
Query: 456 KSIERDVGCRFTQLPRIAVEG 476
IE +G + R VEG
Sbjct: 356 CMIESRLG---HLIERRVVEG 373
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 125/367 (34%), Positives = 201/367 (54%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L + ++ LA G +++ PIQ L + G+D+I RA+TG+GKT AFGI +L ++
Sbjct: 7 SSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRL 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPISHQMRAL 218
+ + LVL PTRELA QV KE A D I + GG P Q+ +L
Sbjct: 67 DALSFR------VQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++G V+GTPGR++D ++R +L+LS ++ +VLDEAD+ML +GF +D+ ++ P RQ
Sbjct: 121 EHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT P I +++ + P+ V + D+ +G +I YE S GQ I
Sbjct: 181 TLLFSATYPDSIAAMSAGVQREPVEVSV----DEVHGEG----AIEQVFYEVDS--GQRI 230
Query: 339 TE------HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
H + ++F TK + +A+A+A + Y +HGD+ Q +R+R L F +
Sbjct: 231 EAVERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFAN 290
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQ 451
++L+ATDVAARGLD+ + +I+YEL E H A+ + T ++
Sbjct: 291 RSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRE 350
Query: 452 ARQVKSI 458
+R + +I
Sbjct: 351 SRLIAAI 357
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 126/381 (33%), Positives = 203/381 (53%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S +V +A+ G K IQ + +QGRD+I A+TGTGKT +F +PIL
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EK-EFHESAPSLDTICVYGGTPISHQMR 216
+K+ + + R + L+L PTRELA QV EK E + L ++ V+GG Q +
Sbjct: 61 EKLRQGQTQ--RKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD +V TPGR++DL + A+ E++ VVLDEAD+ML +GF E + I++ LP
Sbjct: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSAT+ +R L +++P + + + K IS + I K +++
Sbjct: 179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASK--SNISQWLITVDKDTKSALLSH 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI E + + ++F +TK A +L + K + E H SQ+ R + L F+ G+
Sbjct: 237 LINEQ-QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIK 295
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
L+AT VAARG+D+ + +++Y+LP ++ +VH AI + + +
Sbjct: 296 YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
Query: 456 KSIERDVGCRFTQLPRIAVEG 476
IE +G + R VEG
Sbjct: 356 CMIESRLG---HLIERRVVEG 373
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 524 (189.5 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 128/351 (36%), Positives = 199/351 (56%)
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
IQ L + GRD+IG A+TG+GKTL++ +P+L + I+ + + P+ L+L+PTRE
Sbjct: 320 IQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML-RHIQDQQFSKDNQGPIGLILSPTRE 378
Query: 185 LAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA- 240
LA Q+EKE F + +L C YGG+ I +Q+ L GV+ +VGTPGRVIDL+ N+
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 241 --LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
LNL FVVLDEAD+M +GF V IL ++ +RQ+++FSAT P + +L + L
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQIL 498
Query: 299 KNPLTVDLVGDS--DQKLADGISLYSIATS---MYEKPSI--IGQLIT----EHAKGGKC 347
+P+ + + G S ++ + L+ + Y++ + + ++T EH K
Sbjct: 499 TDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDS-KI 557
Query: 348 IVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFR--DGRFNILIATDVAA 404
+VFT+ + DAD L A+ ++ Y +HG Q R+ + F D NILIAT +AA
Sbjct: 558 LVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAA 617
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
RGLDV N+ L+I+++ PN E +VH +AI + Q ++V
Sbjct: 618 RGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEV 668
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 524 (189.5 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 128/351 (36%), Positives = 199/351 (56%)
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
IQ L + GRD+IG A+TG+GKTL++ +P+L + I+ + + P+ L+L+PTRE
Sbjct: 320 IQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML-RHIQDQQFSKDNQGPIGLILSPTRE 378
Query: 185 LAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA- 240
LA Q+EKE F + +L C YGG+ I +Q+ L GV+ +VGTPGRVIDL+ N+
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 241 --LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
LNL FVVLDEAD+M +GF V IL ++ +RQ+++FSAT P + +L + L
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQIL 498
Query: 299 KNPLTVDLVGDS--DQKLADGISLYSIATS---MYEKPSI--IGQLIT----EHAKGGKC 347
+P+ + + G S ++ + L+ + Y++ + + ++T EH K
Sbjct: 499 TDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDS-KI 557
Query: 348 IVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFR--DGRFNILIATDVAA 404
+VFT+ + DAD L A+ ++ Y +HG Q R+ + F D NILIAT +AA
Sbjct: 558 LVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAA 617
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
RGLDV N+ L+I+++ PN E +VH +AI + Q ++V
Sbjct: 618 RGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEV 668
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 123/347 (35%), Positives = 183/347 (52%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ + R G K PIQ + G D+IG A+TGTGKTLA+ +P +
Sbjct: 289 IMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRD 348
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVGT 228
+ P LVL PTRELA Q+E E ++ S +IC+YGG + Q++ + GVD V+ T
Sbjct: 349 KRNGPGMLVLTPTRELALQIEAECNKYSYKGFKSICIYGGGDRNAQIKVVTSGVDIVIAT 408
Query: 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV-EVILERLPQNRQSMMFSATMP 287
PGR+ DL +NL + ++VLDEAD+ML +GF + ++IL+ P +RQ++M SAT P
Sbjct: 409 PGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRP-DRQTVMTSATWP 467
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
P +R L YLK+P+ V VG D + + + EK + I K
Sbjct: 468 PGVRRLAKSYLKDPMMV-YVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKV 526
Query: 348 IVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
++F K AD L+ + + + LHGD Q RE L F+DGR IL+ATD+A+RG
Sbjct: 527 LIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRG 586
Query: 407 LDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
LDV ++ + +Y+ P E +VH ++ + T + R
Sbjct: 587 LDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWR 633
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 124/360 (34%), Positives = 189/360 (52%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
+V AL ++G PIQ L + GRD+ G+A+TGTGKT+AF ++
Sbjct: 20 VVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIAD 79
Query: 170 RGRN-PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
R N P L++APTRELA Q+ + A L YGG Q++ L+ GVD ++
Sbjct: 80 RKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILI 139
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSA 284
GT GR+ID K+N +NL +Q VVLDEAD+M +GF +D+ + R+P R +M+FSA
Sbjct: 140 GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSA 199
Query: 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG 344
T+ +R L + + N +++ + +QK I S EK ++ LI E
Sbjct: 200 TLSYRVRELAFEQMNNAEYIEV--EPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 257
Query: 345 GKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
+ I+F TK + + H A + L GD++Q +R R L F G +IL+ATDVA
Sbjct: 258 -RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVA 316
Query: 404 ARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVG 463
ARGL +P V + +Y+LP+ E +VH +I + ++ A + +IE +G
Sbjct: 317 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 376
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 522 (188.8 bits), Expect = 3.3e-49, P = 3.3e-49
Identities = 126/373 (33%), Positives = 197/373 (52%)
Query: 93 SSKDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
S KD + K + ++ I+ +A+ K IQ L M GRD++G A+TG+GK
Sbjct: 369 SGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGK 428
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT-----IC 204
T+AF +P+ + IK E P+ L+L PTRELA Q+ F + P L T +C
Sbjct: 429 TMAFLLPMF-RHIKDQEPVKDNEGPIGLILTPTRELAVQI---FRDCKPFLKTLGLRAVC 484
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVG 261
YGG PI Q+ L G + VV T GR+IDL+ N ++L ++VLDEAD+M +G
Sbjct: 485 AYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMG 544
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGIS 319
F V I + +RQ+++FSATMP + +L K LKNP+ +++ G S ++ +
Sbjct: 545 FEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVE 604
Query: 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDIS 378
+ + ++G+L + + ++F + + AD L + K Y C LHG
Sbjct: 605 IRDEKSKFNRLLELLGELYKDD-DDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKD 663
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXX 438
Q R+ T+S F+ G ++IAT VAARGLDV + L+++Y+ PN E +VH
Sbjct: 664 QVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG 723
Query: 439 XXXSAILIYTDQQ 451
+A+ T++Q
Sbjct: 724 NTGTAVTFVTEEQ 736
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 141/411 (34%), Positives = 212/411 (51%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL----DK---IIKFNEKHGR 170
G ++ P+QK + GRD++ A+TG+GKT F PIL DK + ++ G
Sbjct: 188 GYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGM 247
Query: 171 GRNP-----LCLVLAPTRELAKQVEKEFHESA-PSLDTIC-VYGGTPISHQMRALDYGVD 223
G P L+LAPTREL Q+ +E + S C VYGG I Q+R +D G D
Sbjct: 248 GYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCD 307
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQS 279
+ TPGR++DLI R ++L+ ++F+VLDEAD+ML +GF + I+E + RQ+
Sbjct: 308 LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367
Query: 280 MMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
+MFSAT P I+ L +LK+ L+V VG + + + + + EK S + +
Sbjct: 368 LMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKV----VHVEDSEKRSYLLDI 423
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ G ++F +TKR AD L + S + +HGD +Q +RER L FR GR +I
Sbjct: 424 LHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSI 483
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK 456
++AT VA+RGLD+PNV +I+Y+LP + +VH A+ + K
Sbjct: 484 MVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAK 543
Query: 457 SI-----ERDVGCR--FTQLPRIAVEGG---GDMYNDMGGRSG--YGSMRD 495
+ E + C + R + GG G Y+ GGR G YG+ RD
Sbjct: 544 ELIELLQEANQECPSFLIAMARESSFGGNGRGGRYSGRGGRGGNAYGA-RD 593
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 442 (160.7 bits), Expect = 5.2e-49, Sum P(2) = 5.2e-49
Identities = 92/277 (33%), Positives = 159/277 (57%)
Query: 177 LVLAPTRELAKQV--E-KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
L+L PTREL QV E K F ++ P + ++ VYGG P +Q+ L G D +V TPGR++
Sbjct: 431 LILLPTRELCLQVLDEIKSFEKNLP-IKSVAVYGGVPKYYQINNLKKGADIIVATPGRLL 489
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
D ++ +NL + +VV+DEAD++L +GF + + I+ ++ +N+Q + +AT P +R L
Sbjct: 490 DFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKL 549
Query: 294 TNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352
+ +P+ + +G ++ I I +S + + + E+ + K ++F
Sbjct: 550 AYDFCSYDPVKIQ-IGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCD 608
Query: 353 TKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
TKR+ D L + YN +HGD Q +R+R L+ ++ R NIL+ATDVA+RGLD+ N
Sbjct: 609 TKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKN 668
Query: 412 VDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYT 448
+ ++I+Y++PNT E ++H +IL ++
Sbjct: 669 ISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFS 705
Score = 98 (39.6 bits), Expect = 5.2e-49, Sum P(2) = 5.2e-49
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
IQK A+ G+D+IG A TG+GKTLAF +P I+K E
Sbjct: 313 IQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKHKE 354
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 121/362 (33%), Positives = 195/362 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + ++ ALA G PIQ L +Q +D+ G+A+TGTGKT+AF + + ++
Sbjct: 14 LPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS 73
Query: 164 FNEKHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
+ GR N P +++APTRELA Q+ K+ A L VYGG Q + LD
Sbjct: 74 SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQ 133
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQ 278
GVD ++GT GR+ID +++ +NL+ +Q VVLDEAD+M +GF +D+ + R+P R
Sbjct: 134 GVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRL 193
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSAT+ ++ L ++ +P+ V++ ++K + I S +K ++ LI
Sbjct: 194 NMLFSATLSMKVQELAYDHMNDPVKVEIA--PEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 339 TEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E K IVF+ TK + L + + L GD+ Q +R R L F G+ +IL
Sbjct: 252 EEDWPE-KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDIL 310
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
+ATDVAARGL + +V + +Y+LP+ E +VH ++ ++ A + +
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPA 370
Query: 458 IE 459
IE
Sbjct: 371 IE 372
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 121/362 (33%), Positives = 195/362 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + ++ ALA G PIQ L +Q +D+ G+A+TGTGKT+AF + + ++
Sbjct: 14 LPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS 73
Query: 164 FNEKHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
+ GR N P +++APTRELA Q+ K+ A L VYGG Q + LD
Sbjct: 74 SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQ 133
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQ 278
GVD ++GT GR+ID +++ +NL+ +Q VVLDEAD+M +GF +D+ + R+P R
Sbjct: 134 GVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRL 193
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSAT+ ++ L ++ +P+ V++ ++K + I S +K ++ LI
Sbjct: 194 NMLFSATLSMKVQELAYDHMNDPVKVEIA--PEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 339 TEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E K IVF+ TK + L + + L GD+ Q +R R L F G+ +IL
Sbjct: 252 EEDWPE-KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDIL 310
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
+ATDVAARGL + +V + +Y+LP+ E +VH ++ ++ A + +
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPA 370
Query: 458 IE 459
IE
Sbjct: 371 IE 372
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 519 (187.8 bits), Expect = 5.9e-49, P = 5.9e-49
Identities = 121/317 (38%), Positives = 185/317 (58%)
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
SK IQ + M GRD+IG A+TG+GKTLAF +P+ I+ E G P+ ++L
Sbjct: 325 SKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELE-EGDGPIAVIL 383
Query: 180 APTRELAKQVEKEFHESA-P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237
APTRELA Q KE ++ A P L C YGG IS Q+ L G + VV TPGR+ID++
Sbjct: 384 APTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLA 443
Query: 238 RNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294
N+ NL V ++VLDEAD+M GF + ++ + ++Q+++FSAT P + +L
Sbjct: 444 ANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALA 503
Query: 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK 354
K L P+ + LVG +D I+ ++ + ++K + +L+ + + G IVF +
Sbjct: 504 RKVLDKPVEI-LVGGKSVVCSD-ITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQ 561
Query: 355 RDADRLAHAMAKS-YNC-EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
AD + + ++ YN PLHG I Q R+ +++ F+ G +L+AT VAARGLDV N+
Sbjct: 562 EKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNL 621
Query: 413 DLIIHYELPNTSETFVH 429
L+++Y+ PN E +VH
Sbjct: 622 ILVVNYDCPNHYEDYVH 638
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 507 (183.5 bits), Expect = 8.1e-49, Sum P(2) = 8.1e-49
Identities = 127/395 (32%), Positives = 199/395 (50%)
Query: 84 VDDYVAYDDSSKDEGLDI-------SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136
VD+ A D K G+D S+ +S ++ + G K IQ + G
Sbjct: 396 VDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSG 455
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
RD+IG A+TG+GKT+AF +P+ + IK G P+ +++ PTRELA Q+ F E
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMF-RHIKDQRPLKTGEGPIAIIMTPTRELAVQI---FREC 511
Query: 197 APSLDTI-----CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQF 248
P L + C YGG PI Q+ L G + VV TPGR+ID++ NA NL +
Sbjct: 512 KPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTY 571
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+VLDEAD+M +GF V I+ + +RQ+++FSAT P + +L K LK P+ + + G
Sbjct: 572 LVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGG 631
Query: 309 DS--DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMA 365
S ++ + + + ++G+L + +VF + AD L + M
Sbjct: 632 RSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLDV-RTLVFVDRQESADALLSDLMK 690
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425
+ Y +HG Q R+ T+S ++ G F++LIAT V ARGLDV ++ L+++Y+ PN E
Sbjct: 691 RGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHME 750
Query: 426 TFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIER 460
+VH A+ T +Q + I +
Sbjct: 751 DYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAK 785
Score = 38 (18.4 bits), Expect = 8.1e-49, Sum P(2) = 8.1e-49
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 86 DYVAYDDSSKDEG 98
DY YDDS +G
Sbjct: 21 DYRKYDDSEDQKG 33
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 506 (183.2 bits), Expect = 8.3e-49, Sum P(2) = 8.3e-49
Identities = 117/335 (34%), Positives = 185/335 (55%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G + + ++ + + ++ PIQ + AM GRDMIG A+TG+GKT AF P+
Sbjct: 254 GSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPM 313
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
L I+ E G P+ +++ PTREL +Q+ E A +L ++ VYGG + Q
Sbjct: 314 LIHIMDQKELEP-GDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 372
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G + VV TPGR+ID +K+ A NL V ++V DEAD+M +GF V I +
Sbjct: 373 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 432
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+++FSAT I L L +P+ V + GD + D + I S K + +
Sbjct: 433 DRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEIFPSGPSKWNWLT 491
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
+ + E G ++F K +A+ LA+ + + +N LHGD+ QS+R + +S F+
Sbjct: 492 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 551
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
IL+ATDVAARGLD+P++ +I+Y++ +T H
Sbjct: 552 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTH 586
Score = 37 (18.1 bits), Expect = 8.3e-49, Sum P(2) = 8.3e-49
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDE 97
P IP + + +F++ + + + PL+ + + ++ Q+A D +D K++
Sbjct: 89 PYIPAENSPTRQQFNSKSADSDSDDDPLEAFMAESVENDQAA-RDMKRLEDKDKEK 143
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 121/345 (35%), Positives = 200/345 (57%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+D+ ++ + +K P+QK+ L ++ RD++ A+TG+GKT AF PI+ I+
Sbjct: 252 VDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILL 311
Query: 164 FNE-------KHG--RGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPI 211
K G R P LVLAPTRELA+Q+ E F +P + ++ +YGG +
Sbjct: 312 DGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSP-VSSVVIYGGAEV 370
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
HQ+ LD G D +V T GR++DL+ R ++LS+++++VLDEAD+ML +GF + I+
Sbjct: 371 FHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIIS 430
Query: 272 R--LP--QNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIAT 325
+P ++RQ++MFSAT P I++L +L N L V +VG + Q + I Y +
Sbjct: 431 EFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTT-QNITQRIE-YVVEE 488
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
+K S + ++ G C++F +TKR D L + + +++ +HGD++Q +RE
Sbjct: 489 ---DKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPEREN 545
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
L +FR L+ATD+A+RGL + NV+L+I+++LP +VH
Sbjct: 546 ALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVH 590
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 124/343 (36%), Positives = 181/343 (52%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP-ILDKIIKFNEK 167
DI+A + + G K PIQ +QG D+IG A+TGTGKTLA+ +P + + K
Sbjct: 250 DIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPK 309
Query: 168 HGRGRNPLCLVLAPTRELAKQVEKE-FHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
RG P LVLAPTRELA QVE E + +IC+YGG Q+ + GVD V+
Sbjct: 310 DKRG-GPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVI 368
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
TPGR+ DL N +NL + ++ +EAD+ML +GF + IL + +RQ++M SAT
Sbjct: 369 ATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATW 427
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P +R L YL+NP+ V VG D + + I + EK + + I K
Sbjct: 428 PDGVRRLAKSYLRNPMIV-YVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDSMKPKDK 486
Query: 347 CIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F K AD +A + + + LHGD Q RE+ L F+ G+ IL+ATD+A+R
Sbjct: 487 AIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASR 546
Query: 406 GLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYT 448
GLDV ++ + +++ P E +VH A+ + T
Sbjct: 547 GLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLIT 589
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 119/391 (30%), Positives = 204/391 (52%)
Query: 85 DDYVAYDDSSKDEGL-DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
DD + ++ + E + + + I +D++ + G K IQ+ + P +QGRD+I +A
Sbjct: 20 DDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQA 79
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLD 201
++GTGKT + + +++ + R L+L+PTRELA Q EK ++
Sbjct: 80 QSGTGKTSMIALSVC-QVVDTSS-----REVQALILSPTRELATQTEKTIQAIGLHANIQ 133
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
GG + +R L++GV V GTPGRV D+IKR +L ++ ++LDE+D+MLS G
Sbjct: 134 AHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRG 193
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F + + + LP + Q + SAT+P I +T+K++ P+ + LV D+ +GI +
Sbjct: 194 FKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKI-LV-KRDELTLEGIKQF 251
Query: 322 SIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
+A E K + L + + ++F TKR D L+ M + ++ +HGD+ Q
Sbjct: 252 FVAVEKEEWKFDTLCDLY-DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQ 310
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXX 439
+R+ ++ FR G +LI TDV ARG+DV V L+I+Y+LPN E ++H
Sbjct: 311 KERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 370
Query: 440 XXSAILIYTDQQARQVKSIERDVGCRFTQLP 470
AI + ++ IE+ + ++P
Sbjct: 371 KGVAINFVKSDDIKILRDIEQYYSTQIDEMP 401
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 509 (184.2 bits), Expect = 8.7e-49, P = 8.7e-49
Identities = 138/477 (28%), Positives = 246/477 (51%)
Query: 54 RFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKD-EGLDI-------SKLD 105
R G R + I P + S ++H Q+ ++ + YDD + G D+ + +
Sbjct: 235 RSEQGPRVTY-IPPPPPAEESDIFKHYQTGIN-FDKYDDIVVEVSGSDVPPAILTFEEAN 292
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-IKF 164
+ + + + G KL PIQK + + GRD++ A+TG+GKT AF +PIL + +K
Sbjct: 293 LCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKG 352
Query: 165 NEKHGRG--RNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDY 220
E + P +++APTREL Q+ + + + + + +YGGT + H ++ +
Sbjct: 353 VESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISE 412
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LP--QN 276
G + + TPGR++D+I++ + L++++++VLDEAD+ML +GF ED+E +L+ +P +
Sbjct: 413 GCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEE 472
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ++MFSAT P I+SL + LK +VG +D + I + K + +
Sbjct: 473 RQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSD-VEQMVIEVDEFGKKDKLME 531
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ E + +VF +TK+ AD +A + + +HGD Q +RE L FR G+
Sbjct: 532 ILQEIGSE-RTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCP 590
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYT---DQQA 452
+++AT VAARGLD+ NV +I++++P+ + +VH AI + D +
Sbjct: 591 VIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQ 650
Query: 453 RQVKSIERDVGCRFTQLP----RIAVEG-GGDMYNDMGGRSGYGSMRDRQYADTGFD 504
R +S+ + + ++P +A G YN + + S DR+ D+ D
Sbjct: 651 RIARSLVKVLSDAHQEVPAWLEEVAFSAHGSSAYNPRSNK--FASTDDRKRGDSRGD 705
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 517 (187.1 bits), Expect = 1.6e-48, P = 1.6e-48
Identities = 121/340 (35%), Positives = 184/340 (54%)
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
IQ + M GRD+IG ARTG+GKTLAF +P+ I+ K G + L+++PTRE
Sbjct: 535 IQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILA-QPKSAPGEGMIALIMSPTRE 593
Query: 185 LAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI---KRN 239
LA Q+ E + + L T CVYGG IS Q+ L G D VV TPGR+ID++ R
Sbjct: 594 LALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRR 653
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
NL V F+VLDEAD+M +GF + I++ + +RQ++MFSAT PP + ++ K L
Sbjct: 654 ITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILN 713
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
PL + + G +D + + +I L + KG + ++FT + D
Sbjct: 714 KPLEI-IAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKG-QILIFTNRQETTDN 771
Query: 360 LAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
L ++ S Y C LHG Q+ R+ T+S F++ ILIAT +A+RGLD+ +++L++++
Sbjct: 772 LYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNF 831
Query: 419 ELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+ P+ E +VH +A T + R SI
Sbjct: 832 DCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSI 871
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 120/373 (32%), Positives = 201/373 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++ ++++ + G K IQ+ + P ++GRD+I +A++GTGKT F I IL +I
Sbjct: 35 MNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI-- 92
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDY 220
R L+LAPTRELA Q+++ E C+ GGT + R L+
Sbjct: 93 ----DTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACI-GGTNVREDARILES 147
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGRV D+I R L ++ VLDEAD+MLS GF + ++ + + LP + Q +
Sbjct: 148 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVI 207
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--I 338
+ SATMPP + ++ ++++P+++ LV + L +GI + + ++ ++ +G L +
Sbjct: 208 LLSATMPPDVLEVSRCFMRDPVSI-LVKKEELTL-EGIKQFYV--NVKQENWKLGTLCDL 263
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ + ++F T+R D+L M+ ++ +HGD+ Q RE + FR G +L
Sbjct: 264 YDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVL 323
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
I TD+ ARG+DV V L+I+Y+LP+ E ++H AI TD R +K
Sbjct: 324 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKD 383
Query: 458 IERDVGCRFTQLP 470
IE+ ++P
Sbjct: 384 IEQFYHTTIEEMP 396
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 117/335 (34%), Positives = 185/335 (55%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G + + ++ + + ++ PIQ + AM GRDMIG A+TG+GKT AF P+
Sbjct: 247 GSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPM 306
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
L I+ E G P+ +++ PTREL +Q+ E A +L ++ VYGG + Q
Sbjct: 307 LIHIMDQKELEP-GDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 365
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G + VV TPGR+ID +K+ A NL V ++V DEAD+M +GF V I +
Sbjct: 366 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 425
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+++FSAT I L L +P+ V + GD + D + I S K + +
Sbjct: 426 DRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEIFPSGPSKWNWLT 484
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
+ + E G ++F K +A+ LA+ + + +N LHGD+ QS+R + +S F+
Sbjct: 485 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 544
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
IL+ATDVAARGLD+P++ +I+Y++ +T H
Sbjct: 545 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTH 579
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 126/346 (36%), Positives = 187/346 (54%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP-ILDKIIKFNEK 167
DI+A + + G K PIQ +QG D+IG A+TGTGKTLA+ +P + + K
Sbjct: 63 DIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPK 122
Query: 168 HGRGRNPLCLVLAPTRELAKQVEKE-FHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
RG P LVLAPTRELA QVE E + +IC+YGG Q+ + GVD V+
Sbjct: 123 DKRG-GPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVI 181
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
TPGR+ DL N +NL + ++VLDEAD+ML +GF + IL + +RQ++M SAT
Sbjct: 182 ATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATW 241
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG-- 344
P +R L YL+NP+ V VG D ++ G+ L + ++K + + +A+
Sbjct: 242 PDGVRRLAKSYLRNPMIV-YVGTLDLAVS-GVVLKYL---QFDKDIFTWKYMQVNAQSFC 296
Query: 345 -GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
+VF Q AD +A + + + LHGD Q RE+ L F+ G+ IL+ATD+
Sbjct: 297 TDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDL 356
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYT 448
A+RGLDV ++ + +++ P E +VH A+ + T
Sbjct: 357 ASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLIT 402
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 112/368 (30%), Positives = 198/368 (53%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L + +V A+ G PIQ + + G++++ A+TGTGKT +F +P+L
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+ + R + ++L PTRELA QVE+ ++ A L + +YGG + Q +
Sbjct: 61 HRFA--DAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD +V TPGR++D+ + A+ EV +VLDEAD+ML +GF ED+ I+E+LP+
Sbjct: 119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+ +++L + + + +++ + I + K +++
Sbjct: 179 RQNLLFSATLSKQVKALAKTAIPDAIEIEI--SRKNAASTQIDQWLTTVDKDRKSALLSH 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI E+ + ++F QTK A +L + K E H SQ+ RE+ L F+ G+
Sbjct: 237 LIKEN-NWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVP 295
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
L+AT V +RG+D+ ++ +I+Y+LP+ ++ ++H AI + R +
Sbjct: 296 FLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNL 355
Query: 456 KSIERDVG 463
+IER +G
Sbjct: 356 CAIERRLG 363
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 112/368 (30%), Positives = 198/368 (53%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L + +V A+ G PIQ + + G++++ A+TGTGKT +F +P+L
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+ + R + ++L PTRELA QVE+ ++ A L + +YGG + Q +
Sbjct: 61 HRFA--DAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD +V TPGR++D+ + A+ EV +VLDEAD+ML +GF ED+ I+E+LP+
Sbjct: 119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+ +++L + + + +++ + I + K +++
Sbjct: 179 RQNLLFSATLSKQVKALAKTAIPDAIEIEI--SRKNAASTQIDQWLTTVDKDRKSALLSH 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI E+ + ++F QTK A +L + K E H SQ+ RE+ L F+ G+
Sbjct: 237 LIKEN-NWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVP 295
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
L+AT V +RG+D+ ++ +I+Y+LP+ ++ ++H AI + R +
Sbjct: 296 FLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNL 355
Query: 456 KSIERDVG 463
+IER +G
Sbjct: 356 CAIERRLG 363
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 122/395 (30%), Positives = 218/395 (55%)
Query: 52 KSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKL 104
+S S G + + P + + SI + H Q+ ++ D + + S D L +
Sbjct: 208 ESSDSQGPKVTYIPPPPPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEA 266
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
++ Q + +A+ G +KL P+QK + + GRD++ A+TG+GKT AF +PIL +++
Sbjct: 267 NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRD 326
Query: 165 NEKHGRGRN---PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
R + P C+++APTREL Q+ E + + + + +YGGT H +R +
Sbjct: 327 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIV 386
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--Q 275
G + + TPGR++D+I + + L +V+++VLDEAD+ML +GF +++ ++ +P +
Sbjct: 387 QGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 446
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSAT P I+ L +LK+ VG D + + Y K +
Sbjct: 447 QRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRD-VQQTILQVGQYSKREKLV 505
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ + + +VF +TK+ AD +A + + + +HGD Q +RE+ L FR G+
Sbjct: 506 EIL-RNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 564
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
+L+AT VAARGLD+ NV +I+++LP+T + +VH
Sbjct: 565 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVH 599
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 119/379 (31%), Positives = 213/379 (56%)
Query: 68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
P + + SI + H Q+ ++ D + + S D L + ++ Q + +A+ G +
Sbjct: 225 PPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYT 283
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN---PLCL 177
KL P+QK + + GRD++ A+TG+GKT AF +PIL +++ R + P C+
Sbjct: 284 KLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECI 343
Query: 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++APTREL Q+ E + + + + +YGGT H +R + G + + TPGR++D+
Sbjct: 344 IVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDI 403
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQSMMFSATMPPWIR 291
I + + L +V+++VLDEAD+ML +GF +++ ++ +P + RQ+++FSAT P I+
Sbjct: 404 IGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQ 463
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L ++LK+ VG D + + Y K + +++ + + +VF
Sbjct: 464 RLAGEFLKSNYLFVAVGQVGGACRD-VQQSILQVGQYSKREKLVEIL-RNIGDERTMVFV 521
Query: 352 QTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TK+ AD +A + + + +HGD Q +RE+ L FR G+ +L+AT VAARGLD+
Sbjct: 522 ETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIE 581
Query: 411 NVDLIIHYELPNTSETFVH 429
NV +I+++LP+T + +VH
Sbjct: 582 NVQHVINFDLPSTIDEYVH 600
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 502 (181.8 bits), Expect = 5.8e-48, P = 5.8e-48
Identities = 119/379 (31%), Positives = 213/379 (56%)
Query: 68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
P + + SI + H Q+ ++ D + + S D L + ++ Q + +A+ G +
Sbjct: 249 PPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYT 307
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN---PLCL 177
KL P+QK + + GRD++ A+TG+GKT AF +PIL ++ R + P C+
Sbjct: 308 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECI 367
Query: 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++APTREL Q+ E + + + + +YGGT + H +R + G + + TPGR++D+
Sbjct: 368 IVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDI 427
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQSMMFSATMPPWIR 291
I + + L +++++VLDEAD+ML +GF +++ ++ +P + RQ++MFSAT P I+
Sbjct: 428 IGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQ 487
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L ++LK+ VG D + + Y K + +++ + + +VF
Sbjct: 488 RLAAEFLKSNYLFVAVGQVGGACRD-VQQADLQVGQYSKREKLLEIL-RNIGDERTMVFV 545
Query: 352 QTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TK+ AD +A + + + +HGD Q +RE+ L FR G+ +L+AT VAARGLD+
Sbjct: 546 ETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIE 605
Query: 411 NVDLIIHYELPNTSETFVH 429
NV +I+++LP+T + +VH
Sbjct: 606 NVQHVINFDLPSTIDEYVH 624
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 121/351 (34%), Positives = 194/351 (55%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--I-LD-KIIKF 164
D++ ++ R GI K PIQ +QG D+I A+TGTGKTL++ +P I LD + I
Sbjct: 232 DLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 291
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVD 223
+++G G LVL PTRELA VE E + S L +IC+YGG + Q+ + GVD
Sbjct: 292 EQRNGPGM----LVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVD 347
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
++ TPGR+ DL N++NL + ++V+DEAD+ML + F + IL + +RQ++M S
Sbjct: 348 IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 407
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT P +R L YLK+P+ V VG+ + + + I T+ EK ++ + + +
Sbjct: 408 ATWPDTVRQLALSYLKDPMIV-YVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSP 466
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
K I+F K AD L+ + + E LHG+ QS +ER + F+ G ILI TD+
Sbjct: 467 NDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDI 526
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR 453
+RGLD+ +V + +Y+ P + +VH +++ + T + ++
Sbjct: 527 VSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSK 577
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 509 (184.2 bits), Expect = 6.5e-48, P = 6.5e-48
Identities = 117/335 (34%), Positives = 186/335 (55%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G ++ + ++ + + ++ PIQ + AM GRDMIG A+TG+GKT AF P+
Sbjct: 252 GSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPM 311
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
L I+ E G P+ +++ PTREL +Q+ E A +L ++ VYGG + Q
Sbjct: 312 LIHIMDQKELEP-GDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G + VV TPGR+ID +K+ A NL V ++V DEAD+M +GF V I +
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 430
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+++FSAT I L L +P+ V + GD + D + I S K + +
Sbjct: 431 DRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEIFPSGPSKWNWLT 489
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
+ + E G ++F K +A+ LA+ + + +N LHGD+ QS+R + +S F+
Sbjct: 490 RRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGI 549
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
IL+ATDVAARGLD+P++ +I+Y++ +T H
Sbjct: 550 PILVATDVAARGLDIPSIKTVINYDVARDIDTHTH 584
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 494 (179.0 bits), Expect = 6.7e-48, Sum P(2) = 6.7e-48
Identities = 126/394 (31%), Positives = 198/394 (50%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK--FNEK 167
++ A+A++ I PIQK + A+ GRD+I A+TG+GKT F P + I+ + EK
Sbjct: 316 LLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEK 375
Query: 168 HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAV 225
G P+ L LAPTRELA Q+ E + + L T +YGG Q + L G + +
Sbjct: 376 ---GDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEII 432
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
V TPGR+ID+IK A L+ V ++VLDEAD+M GF V I+ + +RQ+++FSAT
Sbjct: 433 VATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSAT 492
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
P + L +P+ + +G +D + + S +K + + + G
Sbjct: 493 FKPNVEEFARTILSDPIKIS-IGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQG 551
Query: 346 KCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
++F TK ++L+ + K + LHGD +Q +R +T+ F++G+ NILIATDVAA
Sbjct: 552 SVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAA 611
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQAR-QVKSIER-DV 462
RGLD+P + +++Y+ E+ H A + T + V I+ +
Sbjct: 612 RGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLES 671
Query: 463 GCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDR 496
+F I V + G G GS R R
Sbjct: 672 ASQFVPPELIDVAMNNPHFKRERGGGGGGSNRGR 705
Score = 42 (19.8 bits), Expect = 6.7e-48, Sum P(2) = 6.7e-48
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 476 GGGDMY--NDMGGRSGYGSMRDRQYADT 501
GGG Y N GG + S RD +D+
Sbjct: 709 GGGVGYRRNSRGGGVAFNSNRDSSRSDS 736
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 502 (181.8 bits), Expect = 6.8e-48, P = 6.8e-48
Identities = 122/380 (32%), Positives = 216/380 (56%)
Query: 68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
P + + SI + H Q+ ++ D + + S D L + ++ Q + +A+ G +
Sbjct: 253 PPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYT 311
Query: 121 KLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN---PLC 176
KL P+QK + P +QG RD++ A+TG+GKT AF +PIL +++ R + P C
Sbjct: 312 KLTPVQKYSI-PIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPEC 370
Query: 177 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
+++APTREL Q+ E + + + + +YGGT + H +R + G + + TPGR++D
Sbjct: 371 IIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMD 430
Query: 235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQSMMFSATMPPWI 290
+I + + L +V+++VLDEAD+ML +GF +++ ++ +P + RQ++MFSAT P I
Sbjct: 431 VIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEI 490
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVF 350
+ L ++LK+ VG D + + Y K + +++ + + +VF
Sbjct: 491 QRLAGEFLKSNYLFVAVGQVGGACRD-VQQTILQVGQYSKREKLVEIL-RNIGDERTMVF 548
Query: 351 TQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
+TK+ AD +A + + + +HGD Q +RE+ L FR G+ +L+AT VAARGLD+
Sbjct: 549 VETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDI 608
Query: 410 PNVDLIIHYELPNTSETFVH 429
NV +I+++LP+T + +VH
Sbjct: 609 ENVQHVINFDLPSTIDEYVH 628
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 502 (181.8 bits), Expect = 6.8e-48, P = 6.8e-48
Identities = 122/380 (32%), Positives = 216/380 (56%)
Query: 68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
P + + SI + H Q+ ++ D + + S D L + ++ Q + +A+ G +
Sbjct: 253 PPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYT 311
Query: 121 KLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN---PLC 176
KL P+QK + P +QG RD++ A+TG+GKT AF +PIL +++ R + P C
Sbjct: 312 KLTPVQKYSI-PIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPEC 370
Query: 177 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
+++APTREL Q+ E + + + + +YGGT + H +R + G + + TPGR++D
Sbjct: 371 IIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMD 430
Query: 235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQSMMFSATMPPWI 290
+I + + L +V+++VLDEAD+ML +GF +++ ++ +P + RQ++MFSAT P I
Sbjct: 431 VIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEI 490
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVF 350
+ L ++LK+ VG D + + Y K + +++ + + +VF
Sbjct: 491 QRLAGEFLKSNYLFVAVGQVGGACRD-VQQTILQVGQYSKREKLVEIL-RNIGDERTMVF 548
Query: 351 TQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
+TK+ AD +A + + + +HGD Q +RE+ L FR G+ +L+AT VAARGLD+
Sbjct: 549 VETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDI 608
Query: 410 PNVDLIIHYELPNTSETFVH 429
NV +I+++LP+T + +VH
Sbjct: 609 ENVQHVINFDLPSTIDEYVH 628
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 117/373 (31%), Positives = 202/373 (54%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ + ++++ + G K IQ+ + P ++GRD I +A++GTGKT F I L + ++
Sbjct: 37 MGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGAL-QCVE 95
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT---ICVYGGTPISHQMRALDY 220
N R+P L+L+PTRELA+Q++K + ++ CV GG +S ++ L+
Sbjct: 96 VNV-----RSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACV-GGKNLSDDVKKLET 149
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV V GTPGRV+D+I R +L ++ ++LDEAD+MLS+GF + + + LP Q +
Sbjct: 150 GVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIV 209
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--I 338
+ SAT+ + S+T K++ P+ + L D+ DGI + + S+ ++ G L I
Sbjct: 210 LVSATLTQDVVSMTEKFMTKPVRILL--KRDELTLDGIKQFFV--SVEKEDWKFGTLCDI 265
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ + ++F TK+ D+L M + + +HGD+ Q +RE + +FR G +L
Sbjct: 266 YDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVL 325
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
I TD+ ARG+DV V L+I+Y+LP E ++H AI + R ++
Sbjct: 326 ITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRD 385
Query: 458 IERDVGCRFTQLP 470
IE+ + ++P
Sbjct: 386 IEQFYSTQIDEMP 398
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 25 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 84
Query: 151 LAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYG 207
F I IL ++ I+F E LVLAPTRELA+Q++K + C G
Sbjct: 85 ATFAISILQQLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIG 137
Query: 208 GTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GT + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 197
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
I ++L + Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI-LVKKEELTL-EGIKQFYINVE 255
Query: 327 MYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 256 REEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV 314
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 374
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 375 NFVTEEDKRILRDIETFYNTTVEEMP 400
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 25 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 84
Query: 151 LAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYG 207
F I IL ++ I+F E LVLAPTRELA+Q++K + C G
Sbjct: 85 ATFAISILQQLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIG 137
Query: 208 GTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GT + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 197
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
I ++L + Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI-LVKKEELTL-EGIKQFYINVE 255
Query: 327 MYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 256 REEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV 314
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 374
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 375 NFVTEEDKRILRDIETFYNTTVEEMP 400
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 25 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 84
Query: 151 LAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYG 207
F I IL ++ I+F E LVLAPTRELA+Q++K + C G
Sbjct: 85 ATFAISILQQLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIG 137
Query: 208 GTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GT + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 197
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
I ++L + Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI-LVKKEELTL-EGIKQFYINVE 255
Query: 327 MYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 256 REEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV 314
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 374
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 375 NFVTEEDKRILRDIETFYNTTVEEMP 400
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 25 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 84
Query: 151 LAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYG 207
F I IL ++ I+F E LVLAPTRELA+Q++K + C G
Sbjct: 85 ATFAISILQQLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIG 137
Query: 208 GTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GT + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 197
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
I ++L + Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI-LVKKEELTL-EGIKQFYINVE 255
Query: 327 MYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 256 REEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV 314
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 374
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 375 NFVTEEDKRILRDIETFYNTTVEEMP 400
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 118/391 (30%), Positives = 204/391 (52%)
Query: 83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
A D+ +D + +GL+ + +D++ + G K PIQ+ + A+ GRD++ R
Sbjct: 31 ARDNRQQTEDVTNTKGLEFENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILAR 90
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-- 200
A+ GTGKT AF +P L+ I N K + + CL+L PTRELA Q + L
Sbjct: 91 AKNGTGKTAAFVVPALETI---NPKVSKIQ---CLILVPTRELAMQTSQVCKTLGKHLGI 144
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
+ + GGT + + L V VVGTPGR++DL +N +LSE ++DEAD++LS+
Sbjct: 145 NVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSI 204
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
F +E +L+ P++RQ M+FSAT P ++ ++K + NP ++L+ D+ GI+
Sbjct: 205 EFTPVIEQLLQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYEINLM---DELTLRGITQ 261
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQ 379
Y +K + L ++ + + I+F + + LA + + Y+C H + Q
Sbjct: 262 YYAFVEEKQKVHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQ 320
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXX 439
R R FR+G L+ +D+ RG+D+ V+++I+++ P +ET++H
Sbjct: 321 QARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGH 380
Query: 440 XXSAILIYTDQQARQVKSIERDVGCRFTQLP 470
AI + + + + +IERD+G +P
Sbjct: 381 LGLAINLISWEDRFNLYNIERDLGTEIQPIP 411
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/382 (32%), Positives = 217/382 (56%)
Query: 68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
P D + +I Q+ QS ++ D + D + KD L + ++ + + +AR G
Sbjct: 237 PPDGEDNIFRQY-QSGINFDKYDEILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYV 295
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN---EKHGRGRNPLCL 177
KL P+QK + M GRD++ A+TG+GKT AF +PIL ++ ++ + + P +
Sbjct: 296 KLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAI 355
Query: 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++APTREL Q+ + + + + + VYGG H MR ++ G + + TPGR++D+
Sbjct: 356 IIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDI 415
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LP--QNRQSMMFSATMPPWIR 291
+ + + LS+++++VLDEAD+ML +GFA ++E ++ + +P + RQ++MFSAT P IR
Sbjct: 416 VSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIR 475
Query: 292 SLTNKYLKNP---LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348
L + YLK+ + V LVG + +A + L EK + +++ K + +
Sbjct: 476 RLASNYLKSEHLFVVVGLVGGACSDVAQTV-LEMRENGKMEK---LLEILKSSEKE-RTM 530
Query: 349 VFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407
+F TK+ AD +A + + ++ +HGD Q QRE L FR G+ +++ T VAARGL
Sbjct: 531 IFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGL 590
Query: 408 DVPNVDLIIHYELPNTSETFVH 429
D+ NV +I+Y++P + +VH
Sbjct: 591 DIENVQHVINYDVPKEVDEYVH 612
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 25 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 84
Query: 151 LAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYG 207
F I IL ++ I+F E LVLAPTRELA+Q++K + C G
Sbjct: 85 ATFAISILQQLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIG 137
Query: 208 GTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GT + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 197
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
I ++L + Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI-LVKKEELTL-EGIKQFYINVE 255
Query: 327 MYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 256 REEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV 314
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 374
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 375 NFVTEEDKRILRDIETFYNTTVEEMP 400
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 25 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 84
Query: 151 LAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYG 207
F I IL ++ I+F E LVLAPTRELA+Q++K + C G
Sbjct: 85 ATFAISILQQLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIG 137
Query: 208 GTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GT + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 197
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
I ++L + Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI-LVKKEELTL-EGIKQFYINVE 255
Query: 327 MYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 256 REEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV 314
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 374
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 375 NFVTEEDKRILRDIETFYNTTVEEMP 400
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 26 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 85
Query: 151 LAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYG 207
F I IL ++ I+F E LVLAPTRELA+Q++K + C G
Sbjct: 86 ATFAISILQQLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIG 138
Query: 208 GTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GT + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 139 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 198
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
I ++L + Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 199 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI-LVKKEELTL-EGIKQFYINVE 256
Query: 327 MYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 257 REEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV 315
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAI 444
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 316 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 375
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 376 NFVTEEDKRILRDIETFYNTTVEEMP 401
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 479 (173.7 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 119/424 (28%), Positives = 213/424 (50%)
Query: 53 SRFSAGTREFHAISRPLDFKSSIAWQHAQSAV--DDYVAYDDSSKDEGLDISKLDISQDI 110
S + GT++ A S K W+ D + D + +G + + +++
Sbjct: 49 STINNGTQQ-QAQSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKREL 107
Query: 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170
+ + G K PIQ+ + A+ GRD++ RA+ GTGK+ A+ IP+L+++ +
Sbjct: 108 LMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKD---- 163
Query: 171 GRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
N +V+ PTRELA QV + + + + GGT + + LD V V+
Sbjct: 164 --NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 221
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR++DLIK+ + VQ +VLDEAD++LS F + +E I+ LP+NRQ +++SAT P
Sbjct: 222 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
++ N +L+ P ++L+ + K G++ Y + +K + L + + +
Sbjct: 282 LSVQKFMNSHLQKPYEINLMEELTLK---GVTQYYAYVTERQKVHCLNTLFSR-LQINQS 337
Query: 348 IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
I+F + + + LA +++ Y+C +H + Q R R FR+G L+ TD+ RG
Sbjct: 338 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG 397
Query: 407 LDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRF 466
+D+ V+++I+++ P +ET++H AI + T +KSIE +G
Sbjct: 398 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEI 457
Query: 467 TQLP 470
+P
Sbjct: 458 KPIP 461
Score = 37 (18.1 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 587 QSGRFGDLG 595
+SGRFG LG
Sbjct: 424 RSGRFGHLG 432
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 121/372 (32%), Positives = 194/372 (52%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G + Q+ + M+ + + +++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGRPEPGAFQQRKILVVMKSNNAVVISQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLIT 339
+ SAT+P I +TNK++ +P+ + LV D+ +GI + +A E K + L
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLY- 272
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + ++F TKR D L M ++ + +HGD+ Q +RE + FR G +LI
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSI 458
+TDV ARGLDVP V LII+Y+LPN E ++H AI + R ++ I
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
Query: 459 ERDVGCRFTQLP 470
E+ + ++P
Sbjct: 393 EQYYSTQIDEMP 404
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 124/366 (33%), Positives = 194/366 (53%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L+++ +V L G IQ L +QG D+ G+A+TG GKT+AF ++
Sbjct: 14 LNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHHLL- 72
Query: 164 FNEKHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
+K N P L++APTRELA Q+ ++ E A S L VYGG Q L+
Sbjct: 73 --QKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEA 130
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQ 278
GVD ++GT GR+ID +K+ NL ++ +VLDEAD+M +GF +D+ + +++P R
Sbjct: 131 GVDILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERL 190
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
SM+FSAT+ ++ L ++ +P +V++ + +QK IS S +K +++ LI
Sbjct: 191 SMLFSATLSFRVKELAFDHMNDPTSVEV--EPEQKTNSRISEELFYPSNEDKMTLLQTLI 248
Query: 339 TEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E K IVF TK +++ H A L GD+ Q +R + L F DG +IL
Sbjct: 249 EEDWPE-KAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDIL 307
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKS 457
+ATDVAARGL +P+V + +Y+LP+ + +VH AI + +Q +
Sbjct: 308 VATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPE 367
Query: 458 IERDVG 463
IE +G
Sbjct: 368 IETYIG 373
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 502 (181.8 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 123/376 (32%), Positives = 207/376 (55%)
Query: 90 YDDSSK-DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
++D+S+ D+ L +++S+ ++ A+ G + PIQKA + + G+D+ A TGTG
Sbjct: 170 FEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTG 229
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVY 206
KT AF +P+L+++I K + LVL PTREL QV + A S+ T
Sbjct: 230 KTAAFILPVLERLIY---KPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAV 286
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFAED 265
GG + Q AL G D ++ TPGR+ID + + +LS V+ ++LDEAD+ML F E
Sbjct: 287 GGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQ 346
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
++ I+ ++RQ+M+FSATM ++ L + LKNP + + ++D I
Sbjct: 347 MKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRP 406
Query: 326 SMY-EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQR 382
+ ++ +I+ L+T ++FTQTK+ A R+ H + LHG++SQ+QR
Sbjct: 407 NREGDREAIVSALLTRTFPD-HVMLFTQTKKQAHRM-HILLGLMGLRVGELHGNLSQAQR 464
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXS 442
L F+D + +IL+ATDVAARGLD+ V +I++ +PNT++ +VH
Sbjct: 465 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGR 524
Query: 443 AILIYTDQQARQVKSI 458
++ + +++ + +K I
Sbjct: 525 SVSLVGEEERKMLKEI 540
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 502 (181.8 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 122/376 (32%), Positives = 207/376 (55%)
Query: 90 YDDSSK-DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
++D+S+ DE L +++S+ ++ A+ G + PIQKA + + G+D+ A TGTG
Sbjct: 177 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTG 236
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICV-Y 206
KT AF +P+L+++I K + LVL PTREL QV + A + T C+
Sbjct: 237 KTAAFALPVLERLIY---KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAV 293
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFAED 265
GG + Q AL D ++ TPGR+ID + + +LS ++ ++LDEAD+ML F E
Sbjct: 294 GGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 353
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
++ I+ +RQ+M+FSATM ++ L + LKNP+ + + ++D I
Sbjct: 354 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRP 413
Query: 326 SMY-EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCE--PLHGDISQSQR 382
+ ++ +I+ L+T ++FTQTK+ A R+ H + + LHG++SQ+QR
Sbjct: 414 NREGDREAIVAALLTRTFTD-HVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLSQTQR 471
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXS 442
L F+D + +IL+ATDVAARGLD+ V +I++ +PNT + +VH
Sbjct: 472 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 531
Query: 443 AILIYTDQQARQVKSI 458
++ + +++ + +K I
Sbjct: 532 SVSLVGEEERKMLKEI 547
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 493 (178.6 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 111/309 (35%), Positives = 173/309 (55%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQ + A+ GRD IG A+TG+GKT AF PIL I+ E G P+ +++ PTR
Sbjct: 282 PIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEP-GEGPIAVIVCPTR 340
Query: 184 ELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241
EL +Q+ E A L ++ VYGG + Q +AL G + VV TPGR+ID +K+ A
Sbjct: 341 ELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT 400
Query: 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
+L V F+V DEAD+M +GF V I + +RQ+++FSAT I L L +P
Sbjct: 401 SLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDP 460
Query: 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361
+ V + GD + D + + S +K + + + E G +VF K + + LA
Sbjct: 461 IRV-VQGDIGEANEDITQIVEVLQSGQDKWGWLTRRLVEFTSAGSVLVFVTKKANCEELA 519
Query: 362 -HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL 420
+ + + Y+ LHGD+ QS+R + ++ F+ +L+ATDVAARGLD+P++ +++Y++
Sbjct: 520 TNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDV 579
Query: 421 PNTSETFVH 429
+T H
Sbjct: 580 ARDIDTHTH 588
Score = 38 (18.4 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 479 DMYNDMGGRSGYGSMRDRQ 497
D + D R+G GS RDR+
Sbjct: 861 DRHGD--SRNGEGSHRDRE 877
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 502 (181.8 bits), Expect = 1.4e-47, P = 1.4e-47
Identities = 117/363 (32%), Positives = 198/363 (54%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S+ ++ A+ + G S+ PIQ + A+ G+D++ A TG+GKT AF +P+L++++
Sbjct: 194 ELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLL 253
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTIC-VYGGTPISHQMRALDY 220
F + R L+L PTRELA Q + A S T C + GG Q L
Sbjct: 254 -FRDSEYRAIR--VLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRK 310
Query: 221 GVDAVVGTPGRVID-LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
D V+ TPGR+ID L+ + + L +++ ++LDEAD++L +GF +++ I+E P NRQ+
Sbjct: 311 SPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQT 370
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS---MYEKPSIIGQ 336
M+FSAT+ +++L L+ P+ V + D+ ++ + + + ++P+I+
Sbjct: 371 MLFSATLNDEVKTLAKLSLQQPIRVQV--DALMQVTSTLEQEFVKIKPQHLSDRPAILLS 428
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T G I+F ++K++ RL S LHG++SQ QR +L FRDG+ N
Sbjct: 429 LCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVN 488
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQV 455
L+A+DVA+RGLD+ V +I+Y +PN ++H + TD + +
Sbjct: 489 YLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLL 548
Query: 456 KSI 458
K I
Sbjct: 549 KDI 551
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 502 (181.8 bits), Expect = 1.5e-47, P = 1.5e-47
Identities = 122/376 (32%), Positives = 207/376 (55%)
Query: 90 YDDSSK-DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
++D+S+ DE L +++S+ ++ A+ G + PIQKA + + G+D+ A TGTG
Sbjct: 198 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTG 257
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICV-Y 206
KT AF +P+L+++I K + LVL PTREL QV + A + T C+
Sbjct: 258 KTAAFALPVLERLIY---KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAV 314
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFAED 265
GG + Q AL D ++ TPGR+ID + + +LS ++ ++LDEAD+ML F E
Sbjct: 315 GGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 374
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
++ I+ +RQ+M+FSATM ++ L + LKNP+ + + ++D I
Sbjct: 375 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRP 434
Query: 326 SMY-EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCE--PLHGDISQSQR 382
+ ++ +I+ L+T ++FTQTK+ A R+ H + + LHG++SQ+QR
Sbjct: 435 NREGDREAIVAALLTRTFTD-HVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLSQTQR 492
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXS 442
L F+D + +IL+ATDVAARGLD+ V +I++ +PNT + +VH
Sbjct: 493 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 552
Query: 443 AILIYTDQQARQVKSI 458
++ + +++ + +K I
Sbjct: 553 SVSLVGEEERKMLKEI 568
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 121/371 (32%), Positives = 196/371 (52%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ +IV + G IQ+ + P +GRD++ +A++GTGKT F I L +I +
Sbjct: 28 LNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINE 87
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TI-CVYGGTPISHQMRALDYG 221
NEK + L+LAPTRELA Q++ L T+ GGT +S + A G
Sbjct: 88 -NEKATQA-----LILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSG 141
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VVGTPGRV+D+I+R +V+ +LDEAD+MLS GF E + I LP+ Q ++
Sbjct: 142 VQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLITE 340
SATMP + +T K++ NP+ + LV D+ +GI + I + + K + L +
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRI-LV-KKDELTLEGIKQFYINVELEDYKFDCLCDLY-D 258
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ ++F T+ + L + + + + +H D+ Q++R+ + FR G ILI+
Sbjct: 259 SISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIS 318
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TD+ ARG+DV V L+I+Y+LP E ++H AI TD+ ++ IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIE 378
Query: 460 RDVGCRFTQLP 470
+ + ++P
Sbjct: 379 KFYSTQIEEMP 389
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 123/385 (31%), Positives = 205/385 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 24 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 83
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 84 ATFAISILQQI-ELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI-LVKKEELTL-EGIRQFYINVER 255
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + +HGD+ Q +R+
Sbjct: 256 EEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 314
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 374
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
+ T++ R ++ IE ++P
Sbjct: 375 MVTEEDKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 123/385 (31%), Positives = 205/385 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 24 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 83
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 84 ATFAISILQQI-ELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI-LVKKEELTL-EGIRQFYINVER 255
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + +HGD+ Q +R+
Sbjct: 256 EEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 314
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 374
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
+ T++ R ++ IE ++P
Sbjct: 375 MVTEEDKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 123/385 (31%), Positives = 205/385 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 24 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 83
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 84 ATFAISILQQI-ELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI-LVKKEELTL-EGIRQFYINVER 255
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + +HGD+ Q +R+
Sbjct: 256 EEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 314
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 374
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
+ T++ R ++ IE ++P
Sbjct: 375 MVTEEDKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 118/379 (31%), Positives = 213/379 (56%)
Query: 68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
P + + SI + H Q+ ++ D + + S D L + ++ Q + +A+ G +
Sbjct: 231 PPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYT 289
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN---PLCL 177
KL P+QK + + GRD++ A+TG+GKT AF +PIL ++ R + P C+
Sbjct: 290 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECI 349
Query: 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++APTREL Q+ E + + + + +YGGT + H +R + G + + TPGR++D+
Sbjct: 350 IVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDI 409
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQSMMFSATMPPWIR 291
I + + L +++++VLDEAD+ML +GF +++ ++ +P + RQ++MFSAT P I+
Sbjct: 410 IGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQ 469
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L ++LK+ VG D + + + K + +++ + + +VF
Sbjct: 470 RLAAEFLKSNYLFVAVGQVGGACRD-VQQTVLQVGQFSKREKLVEIL-RNIGDERTMVFV 527
Query: 352 QTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TK+ AD +A + + + +HGD Q +RE+ L FR G+ +L+AT VAARGLD+
Sbjct: 528 ETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIE 587
Query: 411 NVDLIIHYELPNTSETFVH 429
NV +I+++LP+T + +VH
Sbjct: 588 NVQHVINFDLPSTIDEYVH 606
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 123/385 (31%), Positives = 205/385 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 24 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 83
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 84 ATFAISILQQI-ELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI-LVKKEELTL-EGIRQFYINVER 255
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + +HGD+ Q +R+
Sbjct: 256 EEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 314
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 374
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
+ T++ R ++ IE ++P
Sbjct: 375 MVTEEDKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 123/385 (31%), Positives = 205/385 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 24 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 83
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 84 ATFAISILQQI-ELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI-LVKKEELTL-EGIRQFYINVER 255
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + +HGD+ Q +R+
Sbjct: 256 EEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 314
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 374
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
+ T++ R ++ IE ++P
Sbjct: 375 MVTEEDKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 121/371 (32%), Positives = 196/371 (52%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ +IV + G IQ+ + P +GRD++ +A++GTGKT F I L +I +
Sbjct: 28 LNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINE 87
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TI-CVYGGTPISHQMRALDYG 221
NEK + L+LAPTRELA Q++ L T+ GGT +S + A G
Sbjct: 88 -NEKATQA-----LILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSG 141
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VVGTPGRV+D+I+R +V+ +LDEAD+MLS GF E + I LP+ Q ++
Sbjct: 142 VQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQLITE 340
SATMP + +T K++ NP+ + LV D+ +GI + I + + K + L +
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRI-LV-KKDELTLEGIKQFYINVELEDYKFDCLCDLY-D 258
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ ++F T+ + L + + + + +H D+ Q++R+ + FR G ILI+
Sbjct: 259 SISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILIS 318
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIE 459
TD+ ARG+DV V L+I+Y+LP E ++H AI TD+ ++ IE
Sbjct: 319 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIE 378
Query: 460 RDVGCRFTQLP 470
+ + ++P
Sbjct: 379 KFYSTQIEEMP 389
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 125/381 (32%), Positives = 208/381 (54%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII- 162
L +S ++ A+ G +L +Q+ V+ A+ G+D++ A+TGTGKT AF +P+L+++
Sbjct: 6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAA 65
Query: 163 KFNEKHGRGRNPL--CLVLAPTRELAKQV---EKEFHESAPSLDTICVYGGTPISHQMRA 217
K +K PL LV+ PTRELA QV +++ + P L T+ VYGG ++ Q +
Sbjct: 66 KPADK------PLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKG 118
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
++ GVD +V TPGR+ D+I + L+LS V +V+DEAD+ML +GF D+E + +
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+M+FSAT ++ L++K L P V++ ++ + + +Y + K ++ +L
Sbjct: 179 QTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQL-VYRV--DKRRKAELLSEL 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + + +VF TK A+ L + + HGD +Q R R L F+ G+ +
Sbjct: 236 VGRN-NWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK 456
L+ATDVAARGLD+ + L+I+ ELP +E +VH AI + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLA 354
Query: 457 SIERDVGCRFTQLPRIAVEGG 477
IE +G +LP + V+ G
Sbjct: 355 EIEALIG---EKLP-VTVQPG 371
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 125/381 (32%), Positives = 208/381 (54%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII- 162
L +S ++ A+ G +L +Q+ V+ A+ G+D++ A+TGTGKT AF +P+L+++
Sbjct: 6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAA 65
Query: 163 KFNEKHGRGRNPL--CLVLAPTRELAKQV---EKEFHESAPSLDTICVYGGTPISHQMRA 217
K +K PL LV+ PTRELA QV +++ + P L T+ VYGG ++ Q +
Sbjct: 66 KPADK------PLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKG 118
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
++ GVD +V TPGR+ D+I + L+LS V +V+DEAD+ML +GF D+E + +
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+M+FSAT ++ L++K L P V++ ++ + + +Y + K ++ +L
Sbjct: 179 QTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQL-VYRV--DKRRKAELLSEL 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + + +VF TK A+ L + + HGD +Q R R L F+ G+ +
Sbjct: 236 VGRN-NWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVK 456
L+ATDVAARGLD+ + L+I+ ELP +E +VH AI + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLA 354
Query: 457 SIERDVGCRFTQLPRIAVEGG 477
IE +G +LP + V+ G
Sbjct: 355 EIEALIG---EKLP-VTVQPG 371
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 123/385 (31%), Positives = 205/385 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 24 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 83
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 84 ATFAISILQQI-ELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI-LVKKEELTL-EGIRQFYINVER 255
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + +HGD+ Q +R+
Sbjct: 256 EEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 314
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 374
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
+ T++ R ++ IE ++P
Sbjct: 375 MVTEEDKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 123/385 (31%), Positives = 205/385 (53%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 24 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKT 83
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 84 ATFAISILQQI-ELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 137
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 138 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 197
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K++++P+ + LV + L +GI + I
Sbjct: 198 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI-LVKKEELTL-EGIRQFYINVER 255
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + +HGD+ Q +R+
Sbjct: 256 EEWKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 314
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 315 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 374
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
+ T++ R ++ IE ++P
Sbjct: 375 MVTEEDKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 500 (181.1 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 123/380 (32%), Positives = 208/380 (54%)
Query: 90 YDDSSK-DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
++D+S+ DE L +++S+ ++ A+ G + PIQKA + + G+D+ A TGTG
Sbjct: 177 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTG 236
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVY 206
KT AF +P+L+++I K + LVL PTREL QV + A S+ T
Sbjct: 237 KTAAFALPVLERLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAV 293
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFAED 265
GG + Q AL D ++ TPGR+ID + + +LS ++ ++LDEAD+ML F E
Sbjct: 294 GGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 353
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
++ I+ +RQ+M+FSATM ++ L + LKNP+ + + ++D I
Sbjct: 354 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRP 413
Query: 326 SMY-EKPSIIGQLI----TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCE--PLHGDIS 378
+ ++ +I+ L+ T+H ++FTQTK+ A R+ H + + LHG++S
Sbjct: 414 NREGDREAIVAALLMRTFTDHV-----MLFTQTKKQAHRM-HILLGLMGLQVGELHGNLS 467
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXX 438
Q+QR L F+D + +IL+ATDVAARGLD+ V +I++ +PNT + +VH
Sbjct: 468 QTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAG 527
Query: 439 XXXSAILIYTDQQARQVKSI 458
++ + +++ + +K I
Sbjct: 528 RAGRSVSLVGEEERKMLKEI 547
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 124/385 (32%), Positives = 203/385 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 25 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 84
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL ++ + + K + LVLAPTRELA+Q++K + C GG
Sbjct: 85 ATFAISILQQL-EIDLKETQA-----LVLAPTRELAQQIQKVILALGDYMGATCHACIGG 138
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 139 TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIY 198
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K+++ P+ + LV + L +GI + I
Sbjct: 199 EIFQKLSTNIQVVLLSATMPMDVLEVTKKFMREPIRI-LVKKEELTL-EGIKQFYINVER 256
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 257 EEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVI 315
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 316 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 375
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 376 FVTEEDKRILRDIETFYNTTVEEMP 400
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 113/344 (32%), Positives = 201/344 (58%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + D+ Q + + + G +KL P+QK + + GRD++ A+TG+GKT AF +PIL
Sbjct: 266 LTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPIL 325
Query: 159 DKIIKFNEKHGRGRN---PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISH 213
+++ R ++ P C+++APTREL Q+ E + + + + +YGGT + H
Sbjct: 326 AHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGH 385
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-- 271
+R + G + + TPGR++D+I + + L +++++VLDEAD+ML +GF +++ ++
Sbjct: 386 SIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFP 445
Query: 272 RLP--QNRQSMMFSATMPPW-IRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYSIATS 326
+P + RQ++MFSAT P + ++LKN LT+ LV G +D + +
Sbjct: 446 GMPSKEQRQTLMFSATFPRGNFKDWAGEFLKN-LTICLVAVGQVGGACSD-VQQTVLQVG 503
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERT 385
Y K + +++ + + +VF +TK+ AD +A + + + +HGD Q +RE+
Sbjct: 504 QYSKREKLVEILRNIGEE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQA 562
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
L FR G+ +L+AT VAARGLD+ NV +I+++LP+T + +VH
Sbjct: 563 LGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVH 606
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 135/402 (33%), Positives = 216/402 (53%)
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR----- 170
R G SK P+QK + + RD++ A+TG+GKT AF +PI+ I+ +
Sbjct: 156 RSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFT 215
Query: 171 -GRN---PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTP-ISHQMRALDYGVD 223
GR P LVL+PTRELA Q+ KE + + ++ T +YGG Q+ L G
Sbjct: 216 NGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTH 275
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-ERLPQN--RQSM 280
++ TPGR+ID+I++ + L+ +++VLDEAD+ML +GF + I+ + +P R +
Sbjct: 276 ILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTA 335
Query: 281 MFSATMPPWIRSLTNKYLKNP---LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
MFSAT P I+ L +LK+ L V VG + + + + L+ M ++ +++ L
Sbjct: 336 MFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRL-LW--VNEMEKRSNLMEIL 392
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ EH++ +VF +TKR A+ LA+ + + +HGD+ Q +RER L FR G+ I
Sbjct: 393 MNEHSEN-LVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPI 451
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQ---AR 453
L+AT VAARGLD+PNV +I+Y+LP S+ +VH A + D+ R
Sbjct: 452 LVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGR 511
Query: 454 QVKSIERDVGCRFTQ-LPRIAVEG--GGDMYNDMGGRSGYGS 492
+K++ + + L ++A EG GG GG +G+
Sbjct: 512 DLKNLIVESNQEVPEWLHQVAAEGRIGG---GQRGGNRRFGA 550
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 124/385 (32%), Positives = 202/385 (52%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E D +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT
Sbjct: 29 ESNWNEITDNFDDMNLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKT 88
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL ++ + +K + LVLAPTRELA+Q++K + C GG
Sbjct: 89 ATFAISILQQL-EIEQKETQA-----LVLAPTRELAQQIQKVILALGDYMGASCHACIGG 142
Query: 209 TPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + ++M+ L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + +
Sbjct: 143 TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIY 202
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
I ++L N Q ++ SATMP + +T K+++ P+ + LV + L +GI + I
Sbjct: 203 EIFQKLSTNIQVVLLSATMPADVLEVTTKFMREPVRI-LVKKEELTL-EGIKQFYINVER 260
Query: 328 YE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
E K + L E + ++F T+R D L M A+ + LHGD+ Q +R+
Sbjct: 261 EEWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDII 319
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAIL 445
+ FR G +LI TD+ ARG+DV V L+I+Y+LP E ++H AI
Sbjct: 320 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 379
Query: 446 IYTDQQARQVKSIERDVGCRFTQLP 470
T++ R ++ IE ++P
Sbjct: 380 FVTEEDKRILRDIETFYNTTVEEMP 404
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 501 (181.4 bits), Expect = 2.1e-47, P = 2.1e-47
Identities = 122/376 (32%), Positives = 206/376 (54%)
Query: 90 YDDSSK-DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
++D+S+ DE L +++S+ ++ A+ G + PIQKA + + G+D+ A TGTG
Sbjct: 208 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTG 267
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICV-Y 206
KT AF +P+L+++I K + LVL PTREL QV + A + T C+
Sbjct: 268 KTAAFALPVLERLIY---KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAV 324
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFAED 265
GG + Q AL D ++ TPGR+ID + + +LS ++ ++LDEAD+ML F E
Sbjct: 325 GGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 384
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
++ I+ +RQ+M+FSATM ++ L + LKNP+ + + ++D I
Sbjct: 385 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRP 444
Query: 326 SMY-EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCE--PLHGDISQSQR 382
+ ++ +I+ L+T ++FTQTK+ A R+ H + + LHG++SQ+QR
Sbjct: 445 NREGDREAIVAALLTRTFTD-HVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLSQTQR 502
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXS 442
L F+D + +IL+ATDVAARGLD+ V +I++ +PNT + +VH
Sbjct: 503 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 562
Query: 443 AILIYTDQQARQVKSI 458
++ + + + + +K I
Sbjct: 563 SVSLVGEDERKMLKEI 578
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 497 (180.0 bits), Expect = 2.4e-47, P = 2.4e-47
Identities = 118/379 (31%), Positives = 213/379 (56%)
Query: 68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
P + + SI + H Q+ ++ D + + S D L + ++ Q + +A+ G +
Sbjct: 251 PPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYT 309
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN---PLCL 177
KL P+QK + + GRD++ A+TG+GKT AF +PIL ++ R + P C+
Sbjct: 310 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECI 369
Query: 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++APTREL Q+ E + + + + +YGGT + H +R + G + + TPGR++D+
Sbjct: 370 IVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDI 429
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQSMMFSATMPPWIR 291
I + + L +++++VLDEAD+ML +GF +++ ++ +P + RQ++MFSAT P I+
Sbjct: 430 IGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQ 489
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L ++LK+ VG D + + + K + +++ + + +VF
Sbjct: 490 RLAAEFLKSNYLFVAVGQVGGACRD-VQQTVLQVGQFSKREKLVEIL-RNIGDERTMVFV 547
Query: 352 QTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TK+ AD +A + + + +HGD Q +RE+ L FR G+ +L+AT VAARGLD+
Sbjct: 548 ETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIE 607
Query: 411 NVDLIIHYELPNTSETFVH 429
NV +I+++LP+T + +VH
Sbjct: 608 NVQHVINFDLPSTIDEYVH 626
WARNING: HSPs involving 655 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 618 525 0.00091 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 905
No. of states in DFA: 610 (65 KB)
Total size of DFA: 265 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.17u 0.22s 41.39t Elapsed: 00:00:02
Total cpu time: 41.25u 0.22s 41.47t Elapsed: 00:00:02
Start: Mon May 20 22:46:06 2013 End: Mon May 20 22:46:08 2013
WARNINGS ISSUED: 2