BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007084
(618 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/549 (66%), Positives = 434/549 (79%), Gaps = 35/549 (6%)
Query: 59 TREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLDISKLDISQDIVAALAR 116
+R+FH S PLDFK+S Q A AV DY + ++ K +EGL+IS L IS++IV +LA+
Sbjct: 26 SRDFHVKSGPLDFKASSVTQ-AGIAVADYGSDEEKGKGSEEGLEISNLGISKEIVNSLAK 84
Query: 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
+GI+KLFPIQKAVLEPAMQG+DM GRARTGTGKTLAFGIPILDKII+FN++HG+GRNPL
Sbjct: 85 KGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKIIEFNKQHGKGRNPLA 144
Query: 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI 236
+V+APTRELA+QV+KEFH+SAPSLDTIC+YGG PIS QMR L+YGVD VVGTPGR+IDL+
Sbjct: 145 MVMAPTRELARQVQKEFHDSAPSLDTICLYGGVPISSQMRELEYGVDVVVGTPGRIIDLM 204
Query: 237 KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296
KR +LNLSE+++VVLDEADQML VGF +D+E IL RLP+ R SM FSATMP WI+ L K
Sbjct: 205 KRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKKRHSMCFSATMPSWIKQLVRK 264
Query: 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD 356
YLK+PLT+DLVGDSD+KLADGI+LYSIA+ MY K SI+G LITEHAKGGKCIVFT+TKRD
Sbjct: 265 YLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGPLITEHAKGGKCIVFTETKRD 324
Query: 357 ADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416
ADRLA+AMAK++ CE LHGDISQ+ RERTLS FR+G FNIL+ATDVAARGLDVPNVDLII
Sbjct: 325 ADRLAYAMAKNHKCEALHGDISQNVRERTLSGFREGHFNILVATDVAARGLDVPNVDLII 384
Query: 417 HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEG 476
HY LP SETFVHR+GRTGRAGKKG+AILIYT ARQVK IERD GCRF++LP+IAV+G
Sbjct: 385 HYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDDARQVKLIERDTGCRFSELPKIAVDG 444
Query: 477 GG-DMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNNSSY 535
DM+ND+G R R + GF G+ G+G G R+ G GR
Sbjct: 445 ASLDMHNDLG--------RGRSNSSGGF------GNRGYGSGQGSRNSGFGR-------S 483
Query: 536 SGQGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDTGSRQSGRFGDLG 595
+GQ GSS GG+ N N++G FG RSG +GES +SDRSS FGD GS +S FGD G
Sbjct: 484 NGQFSGSSQGGY--NRNKTGNFG-----RSGSFGESGRSDRSSTFGDFGSGRSSTFGDFG 536
Query: 596 DNHSSRSSG 604
S RSSG
Sbjct: 537 ---SGRSSG 542
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/497 (70%), Positives = 411/497 (82%), Gaps = 25/497 (5%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVV-SRAEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ MYEK SI+G LITE
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITE 356
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HAKGGKCIVFTQTKRDADRLA+AMA+++ CE LHGDISQSQRERTLS FRDG FN+L+AT
Sbjct: 357 HAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+PNVDLIIHYELPN+SE FVHR+GRTGRAGKKG+AILIY +QQAR V+ IER
Sbjct: 417 DVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIER 476
Query: 461 DVGCRFTQLPRIAVEGG 477
D+GC+F++LPRIA+EGG
Sbjct: 477 DIGCKFSELPRIAIEGG 493
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/497 (70%), Positives = 411/497 (82%), Gaps = 25/497 (5%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVV-SRAEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ MYEK SI+G LITE
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITE 356
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HAKGGKCIVFTQTKRDADRLA+AMA+++ CE LHGDISQSQRERTLS FRDG FN+L+AT
Sbjct: 357 HAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+PNVDLIIHYELPN+SE FVHR+GRTGRAGKKG+AILIY +QQAR V+ IER
Sbjct: 417 DVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIER 476
Query: 461 DVGCRFTQLPRIAVEGG 477
D+GC+F++LPRIA+EGG
Sbjct: 477 DIGCKFSELPRIAIEGG 493
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/497 (70%), Positives = 411/497 (82%), Gaps = 25/497 (5%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVV-SRAEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ MYEK SI+G LITE
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITE 356
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HAKGGKCIVFTQTKRDADRLA+AMA+++ CE LHGDISQSQRERTLS FRDG FN+L+AT
Sbjct: 357 HAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+PNVDLIIHYELPN+SE FVHR+GRTGRAGKKG+AILIY +QQAR V+ IER
Sbjct: 417 DVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIER 476
Query: 461 DVGCRFTQLPRIAVEGG 477
D+GC+F++LPRIA+EGG
Sbjct: 477 DIGCKFSELPRIAIEGG 493
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/558 (64%), Positives = 426/558 (76%), Gaps = 42/558 (7%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + IL+R+ S L S+R AAL S T +H + + +R
Sbjct: 1 MLTAILRRTCSTL-SRRGFPAALISASTA-GNHFRPPSAAFI---------------SRT 43
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK----DEGLDISKLDISQDIVAALARR 117
FH+ + PL+F+SS + A+ AVDD+ Y++ SK DEGL+I+KL IS+DIV+ALA++
Sbjct: 44 FHSNTGPLNFRSS-SCHRAEYAVDDF-PYEEGSKGNAADEGLEIAKLGISEDIVSALAKK 101
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DKII+FN KHGRGR+PL L
Sbjct: 102 GITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLAL 161
Query: 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237
VLAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+
Sbjct: 162 VLAPTRELARQVETEFCESAPNLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLLN 221
Query: 238 RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297
R ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ Y
Sbjct: 222 RGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNY 281
Query: 298 LKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDA 357
L NPLT+DLVGDSDQKLADGISLYSIAT +Y K I+ LITEHAKGGKCIVFTQTKRDA
Sbjct: 282 LNNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDA 341
Query: 358 DRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417
DRL++ MA+S CE LHGDISQ+QRE+TL+ FR+G FN+L+ATDVA+RGLD+PNVDL+IH
Sbjct: 342 DRLSYTMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIH 401
Query: 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGG 477
Y+LPN SE FVHR+GRTGRAGKKG+AIL+YT+ Q+R VK IERDVG RFT+LPRIAV+
Sbjct: 402 YDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRFTELPRIAVDSA 461
Query: 478 G-DMY--NDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGR--YGGNN 532
DM G +G RDR+Y DTGF G GRSGGY +PGSGR +G +
Sbjct: 462 SVDMVGGMGGGRFGSFGGTRDRRYGDTGF---------GSGRSGGYSNPGSGRSSFGNSG 512
Query: 533 SSYSGQ-----GGGSSSG 545
+ GQ G G+SSG
Sbjct: 513 ERFGGQNYNRFGSGNSSG 530
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/485 (70%), Positives = 391/485 (80%), Gaps = 15/485 (3%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ +L HLA P R D+ +K
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINAVLFHHLA-----PAAARVSDLAVIGSSDVKPG 54
Query: 55 FSAGT--REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVA 112
F +G REFH S PL+F++S+ + + S+ +GL IS+L IS +IV
Sbjct: 55 FLSGVKAREFHFESGPLEFRASMVSSAGFAISESSERRVGDSESDGLAISELGISPEIVK 114
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHGRGR
Sbjct: 115 ALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGR 174
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
NPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTPGRV
Sbjct: 175 NPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRV 234
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP WIRS
Sbjct: 235 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRS 294
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352
LT KYL NPLT+DLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIVFTQ
Sbjct: 295 LTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGPLVTEHAKGGKCIVFTQ 354
Query: 353 TKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
TKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDVPNV
Sbjct: 355 TKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNV 414
Query: 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472
DLIIHYELPN +ETFVHRTGRTGRAGKKGSAILIY+ Q+R VK IER+VG RFT+LP I
Sbjct: 415 DLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSI 474
Query: 473 AVEGG 477
AVE G
Sbjct: 475 AVERG 479
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/488 (70%), Positives = 392/488 (80%), Gaps = 18/488 (3%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAGT--REFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIV
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV 354
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDV
Sbjct: 355 FTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDV 414
Query: 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
PNVDLIIHYELPN +ETFVHRTGRTGRAGKKGSAILIY+ Q+R VK IER+VG RFT+L
Sbjct: 415 PNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTEL 474
Query: 470 PRIAVEGG 477
P IAVE G
Sbjct: 475 PSIAVERG 482
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/537 (65%), Positives = 415/537 (77%), Gaps = 25/537 (4%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R+FH S PLDFK+S + +AV DY + +EGL+IS+L ISQ+IV ALA++GI
Sbjct: 4 RDFHVKSGPLDFKAS-SVTETFNAVPDYGYDEGKGNEEGLEISRLGISQEIVGALAKKGI 62
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
+KLFPIQ+AVLEPAMQG+DM GRARTGTGKTLAFGIPILDKI++FN +HGRGR PL +V+
Sbjct: 63 TKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQFNAQHGRGRYPLGIVM 122
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF E+APSLD C+YGGTPIS QMR L+YGVD VVGTPGR+IDL+KR
Sbjct: 123 APTRELARQVEKEFREAAPSLDITCLYGGTPISQQMRDLEYGVDVVVGTPGRIIDLMKRG 182
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
+L LSEVQ VVLDEADQML VGF +D+E IL +PQ R SM FSATMP WIR L KYLK
Sbjct: 183 SLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMCFSATMPSWIRELVRKYLK 242
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
+PLT+DLVGDSD+KLA+GI+LYSIA+ +Y K SI+G LITEHAKGGKCIVFT+TKRDADR
Sbjct: 243 DPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLITEHAKGGKCIVFTETKRDADR 302
Query: 360 LAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE 419
LA+AMAK+Y CE LHGDISQS RERTLS FR+G FNIL+ATDVAARGLDVPNVDLIIHY
Sbjct: 303 LAYAMAKTYKCEALHGDISQSVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYA 362
Query: 420 LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGG- 478
LP SETFVHR+GRTGRAGKKG+AILIYT ++RQV+ IERD GC+F +LP+IAV+G
Sbjct: 363 LPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQVRIIERDTGCKFLELPKIAVDGESI 422
Query: 479 DMYNDMG-GR-SGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNNSSYS 536
DMYNDMG GR + +GS R G +G G+R+ G GR
Sbjct: 423 DMYNDMGRGRFNSFGSPRGFGDG------GRYGGQGNYGSGQGFRNSGFGRS-------D 469
Query: 537 GQGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDTGSRQSGRFGD 593
GQ GSS G+ N N+SG FG RS +GE ++DRSS FGD GS +S FGD
Sbjct: 470 GQFSGSSRNGY--NRNQSGNFG-----RSSNFGEP-RTDRSSNFGDFGSGRSSSFGD 518
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/545 (64%), Positives = 422/545 (77%), Gaps = 30/545 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + +L+R+SS L S+R AAL S T + A H ++ + + +R
Sbjct: 1 MLTAVLRRTSSTL-SRRGFPAALISASTATATATAG--------NHFRLLSA--AVNSRT 49
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRG 118
FH+ PL+F++S + A+ AVDD+ Y++ SK DEGL+I+KL ISQDIV+ALA++G
Sbjct: 50 FHSNPGPLNFRAS-SCHRAEYAVDDF-PYEEGSKGNADEGLEIAKLGISQDIVSALAKKG 107
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
I+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK+I+FN KHGRGR+PL LV
Sbjct: 108 ITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQFNAKHGRGRDPLALV 167
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
LAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+ R
Sbjct: 168 LAPTRELARQVESEFCESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNR 227
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ YL
Sbjct: 228 GALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYL 287
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD 358
NPLT+DLVGDSDQKLADGISLYSIAT +Y K I+ LITEHAKGGKCIVFTQTKRDAD
Sbjct: 288 NNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDAD 347
Query: 359 RLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
RL++AMA+S CE LHGDISQ+QRE+TL+ FR+G FN+L+ATDVA+RGLD+PNVDL+IHY
Sbjct: 348 RLSYAMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHY 407
Query: 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGG 478
+LPN SE FVHR+GRTGRAGKKG+AIL+YT+ Q+R VK IERDVG RF++LPRIAV+
Sbjct: 408 DLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIERDVGSRFSELPRIAVDSAS 467
Query: 479 DMYND---MGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGR--YGGNNS 533
+ D G +G RDR+Y D GF G G SGGY +PGSGR +G +
Sbjct: 468 AVMVDSMGGGRFGSFGGNRDRRYGDMGF---------GSGHSGGYSNPGSGRSSFGNSGE 518
Query: 534 SYSGQ 538
+ GQ
Sbjct: 519 RFGGQ 523
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/589 (63%), Positives = 436/589 (74%), Gaps = 24/589 (4%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDII----KS 53
MMS+I+L+RSS+ S + + L + + L S + +H I KS
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKS 60
Query: 54 R-FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLV-SKAEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L+ YL NPLT+DLVGDSDQKLADGISL+S+ + Y K SIIG LITEH KGGKCI+FT
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFT 359
Query: 352 QTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
QTKRDADRLA+AM ++ CE LHGDISQSQRERTLS FRDGRFN+L+ATDVAARGLD+PN
Sbjct: 360 QTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPN 419
Query: 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471
VDL+IH+ELPN +E FVHR+GRTGRAGKKGS ILIY+ Q R ++ IER+VGCRF +LPR
Sbjct: 420 VDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPR 479
Query: 472 IAVEGGGDMYNDM-GGRSGYGSMRDRQYADTGFDRSSRMGD--SGFGRSGGYRSPGSGRY 528
I VE G + DM G S G DRQ ++G R G+ FGRSGGY S GR
Sbjct: 480 ITVEAGAHV--DMFSGGSFGGGFGDRQMNNSG-----RFGNRGGSFGRSGGYESSSFGRS 532
Query: 529 GGNNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRSGG-WGESTKSDR 576
G NS S GS N+N SG FG P F +S G +G+S S+R
Sbjct: 533 IGRNSGPSSGSFGSFG---SRNSNSSGGFGRPDFGQSAGRFGDSGSSNR 578
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/589 (63%), Positives = 434/589 (73%), Gaps = 24/589 (4%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDIIKSR--- 54
MMS+I+L+RSS+ S + + L + + L S + +H I
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKP 60
Query: 55 --FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLV-SKAEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L+ YL NPLT+DLVGDSDQKLADGISL+S+ + Y K SIIG LITEH KGGKCI+FT
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFT 359
Query: 352 QTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
QTKRDADRLA+AM ++ CE LHGDISQSQRERTLS FRDGRFN+L+ATDVAARGLD+PN
Sbjct: 360 QTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPN 419
Query: 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471
VDL+IH+ELPN +E FVHR+GRTGRAGKKGS ILIY+ Q R ++ IER+VGCRF +LPR
Sbjct: 420 VDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPR 479
Query: 472 IAVEGGGDMYNDM-GGRSGYGSMRDRQYADTGFDRSSRMGD--SGFGRSGGYRSPGSGRY 528
I VE G + DM G S G DRQ ++G R G+ FGRSGGY S GR
Sbjct: 480 ITVEAGAHV--DMFSGGSFGGGFGDRQMNNSG-----RFGNRGGSFGRSGGYESSSFGRS 532
Query: 529 GGNNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRSGG-WGESTKSDR 576
G NS S GS N+N SG FG P F +S G +G+S S+R
Sbjct: 533 IGRNSGPSSGSFGSFG---SRNSNSSGGFGRPDFGQSAGRFGDSGSSNR 578
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/505 (66%), Positives = 399/505 (79%), Gaps = 19/505 (3%)
Query: 58 GTREFHAISRPLDFKSSIAWQHAQSAVD-DYVAYDDSSK---DEGLDISKLDISQDIVAA 113
G R FHA PL+F++S+ + AQ A++ DY Y++ S DEGL+I+KL I+ +IV A
Sbjct: 42 GARTFHANPGPLNFRASLVPRAAQFAIERDYSNYEEVSNANSDEGLEIAKLGIAPEIVDA 101
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
LAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILD+I +FN KHG+GRN
Sbjct: 102 LARKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRITQFNAKHGQGRN 161
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
PL LVLAPTRELA+QVEKEF+E+AP+L TIC+YGG PI QMR L+YGVD VGTPGR+I
Sbjct: 162 PLALVLAPTRELARQVEKEFNEAAPNLATICLYGGMPIQQQMRQLNYGVDIAVGTPGRII 221
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DL+ R ALNL +V+FVVLDEADQML VGF E VE ILE L NRQ++MFSATMP WI+++
Sbjct: 222 DLLNRGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNI 281
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT 353
T YL NPLT+DLVGDSDQKLADGISLYSI + Y K I+ LITEHA GGKCIVFTQT
Sbjct: 282 TRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQT 341
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KRDADRL++ MAKS CE LHGDISQ+QRERTL+ FR+ FN+L+ATDVA+RGLD+PNVD
Sbjct: 342 KRDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVD 401
Query: 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI- 472
L+IHY+LPN+SE FVHR+GRTGRAGKKGSAIL +T Q R V++IERDVGC+FT+LP+I
Sbjct: 402 LVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILFFTQDQFRAVQTIERDVGCKFTELPKID 461
Query: 473 AVEGGGDMYNDM-GGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGN 531
A G +M++ M GGR +GSMRDRQ TGF RS GFGRSG Y + G G+
Sbjct: 462 APSGSAEMFSGMAGGR--FGSMRDRQSGGTGFGRS-----PGFGRSGSYGNSGFGQ---- 510
Query: 532 NSSYSGQGGGSSSGGFGSNANRSGK 556
SSY G G G + FG N+ G
Sbjct: 511 -SSYDGFGSGQAP-QFGGNSRPGGN 533
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/510 (66%), Positives = 392/510 (76%), Gaps = 27/510 (5%)
Query: 2 MSSIILKRSSSFL-TSKRALTAALTSVETILHSHLAAAK----------SGPVIPRHDDI 50
M S +L RS FL TS+R L A++TS+ L +LA A +G + +
Sbjct: 1 MISTVLHRS--FLGTSRRTLAASVTSINAALFHNLAPAAAATATVSDLANGATNVKSLPL 58
Query: 51 IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDS-------------SKDE 97
+ F R+FH S P +F+SSI +A + +Y++S S +
Sbjct: 59 NSNPFGVKGRDFHVKSVPSEFRSSIVSPAGFAAQEYAPSYENSDGGMGDSESVGSSSGGD 118
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
GL IS+L IS +IV AL RGI KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP+
Sbjct: 119 GLAISELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPV 178
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
+DKIIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR
Sbjct: 179 IDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRE 238
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+YG+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP+ R
Sbjct: 239 LNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPEKR 298
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
QSMMFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA Y + SIIG L
Sbjct: 299 QSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPL 358
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ EH KGGKCIVFTQTKRDADRLA +AKS+ CE LHGDISQ+QRERTL+ FRDG FNIL
Sbjct: 359 VNEHGKGGKCIVFTQTKRDADRLAFGLAKSFKCEALHGDISQAQRERTLAGFRDGNFNIL 418
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVPNVDL+IHYELPN +ETFVHRTGRTGRAGKKGSAILI+ +Q+R VK
Sbjct: 419 VATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSRAVKM 478
Query: 458 IERDVGCRFTQLPRIAVE-GGGDMYNDMGG 486
IE++VG RF +LP IAVE G M+ +G
Sbjct: 479 IEKEVGSRFNELPSIAVERGSASMFEGVGA 508
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/548 (62%), Positives = 414/548 (75%), Gaps = 18/548 (3%)
Query: 58 GTREFHAISRPLDFKSSIAWQHAQSAVD-DYVAYDDSS---KDEGLDISKLDISQDIVAA 113
G+R H PL+F++S + AQ AV+ DY Y++ S DEGL+I+ L I+ IV A
Sbjct: 43 GSRTIHTNPGPLNFRASAVPRAAQFAVERDYSNYEEVSGANSDEGLEIANLGIAPQIVDA 102
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
LA++GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILD II+FN KHG+GR+
Sbjct: 103 LAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDSIIQFNAKHGQGRH 162
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
PL LVLAPTRELA+QVEKEF+E+AP+L IC+YGG PI QMR L+YGVD VGTPGR+I
Sbjct: 163 PLALVLAPTRELARQVEKEFNEAAPNLAMICLYGGMPIQQQMRQLNYGVDIAVGTPGRII 222
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DL+ R ALNL V+FVVLDEADQML VGF E VE ILE L NRQ++MFSATMP WI+++
Sbjct: 223 DLLNRGALNLKNVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNI 282
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT 353
T YL NPLT+DLVGDSDQKLADGISLYSI + Y K I+ LITEHA GGKCIVFTQT
Sbjct: 283 TRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQT 342
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KRDADRL++ MAKS CE LHGDISQ+QRE+TL+ FR+ FN+L+ATDVA+RGLD+PNVD
Sbjct: 343 KRDADRLSYVMAKSLRCEALHGDISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVD 402
Query: 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI- 472
L+IHY+LPN+SE FVHR+GRTGRAGKKGSAIL+YT Q+R V++I+RDVGC+FT+LP+I
Sbjct: 403 LVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILVYTQGQSRAVQTIQRDVGCKFTELPKID 462
Query: 473 AVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNN 532
A G +M+ M G GSMRDRQ TGF R + G GRSG Y + G GR N
Sbjct: 463 APAGSAEMFTGM-GGGRSGSMRDRQSGGTGFGR-----NPGLGRSGSYGNSGFGRSSYGN 516
Query: 533 SSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDTGSRQSGRFG 592
SS + GGFGS +FGG SR G+G S++S +F + GS QSG +G
Sbjct: 517 SSEMNR----YDGGFGS-GQAGTRFGGK--SRPSGFGGFGSSNQSGSFRNFGSGQSGAYG 569
Query: 593 DLGDNHSS 600
D + SS
Sbjct: 570 DRMSSQSS 577
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/477 (67%), Positives = 385/477 (80%), Gaps = 24/477 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + IL+R+SS + S+R + AA IL S AA + RH R
Sbjct: 1 MITTILRRASSTI-SRRTIPAA----AEILFSTTAATEL-----RH---------LTARS 41
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRG 118
FH+ S+PL F++S A + +A + +++ SK DEGL+I+KL ISQDIV+AL ++G
Sbjct: 42 FHSKSQPLLFRASSASRAGYAA--EAFPFEEPSKSNSDEGLEIAKLGISQDIVSALEKKG 99
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
I+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DKII+FN KHGRG++PL LV
Sbjct: 100 ITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALV 159
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
LAPTRELAKQVEKEF+E+AP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+ R
Sbjct: 160 LAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNR 219
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
ALNL EVQFV+LDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ LT YL
Sbjct: 220 GALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAERQTLMFSATMPTWIKQLTRNYL 279
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD 358
KNPLT+DLVGDSDQKLADGISLYSI + Y K II LI EHAKGGKCIVFTQTKRDAD
Sbjct: 280 KNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDAD 339
Query: 359 RLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
R++H M+KS CE LHGDISQ QRERTL+ FR+G FN+L+ATDVA+RGLD+PNVDL+IHY
Sbjct: 340 RISHGMSKSIPCEALHGDISQIQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHY 399
Query: 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
ELPN SE FVHR+GRTGRAGKKG+AIL+YT Q+R +++IERDVGC+F++LP+IAV+
Sbjct: 400 ELPNNSEIFVHRSGRTGRAGKKGTAILVYTQDQSRTLRTIERDVGCKFSELPKIAVD 456
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/560 (59%), Positives = 417/560 (74%), Gaps = 32/560 (5%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FHA PL F+S+ + + A + ++GL++++L IS IV LA RGI
Sbjct: 52 RAFHASPGPLGFRSTTPAPWPGTVSEAGAA----AGEDGLEVARLGISPRIVERLAARGI 107
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++L
Sbjct: 108 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIIL 167
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PIS QMR L+YGVD VVGTPGRVIDL++R
Sbjct: 168 APTRELARQVEKEFRESAP-LDTLCVYGGVPISQQMRTLNYGVDVVVGTPGRVIDLLRRG 226
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLSE+QF+VLDEADQML+VGF E VEVI+E+LPQNRQSM+FSATMP WIR LTN+YLK
Sbjct: 227 VLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQNRQSMLFSATMPSWIRKLTNQYLK 286
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
+P+ +DLVGDS+QKL +GISLYSI + Y K SI+G LI EHA GGKCIVFTQTKR+ADR
Sbjct: 287 DPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHADGGKCIVFTQTKREADR 346
Query: 360 LAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE 419
LA+AM +SY C+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDL++HYE
Sbjct: 347 LAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYE 406
Query: 420 LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI-AVEGGG 478
+PN+SE FVHR+GRT RAGKKG AIL+YT +Q+R VK IE+D+GCRFT+LP++ A +
Sbjct: 407 IPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRTVKGIEQDIGCRFTELPKVAATDEAA 466
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGY---RSPGSGR---YGG-- 530
+++N MRD + G RS G S F GG+ S G G +GG
Sbjct: 467 ELFN---------VMRDTRSRSVGTRRS---GGSSFSHYGGFGERHSRGFGEFDSFGGTP 514
Query: 531 NNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSS-AFGDTGSRQSG 589
N + +S G GGFG + S GF RS G+G+S + ++S FG + +SG
Sbjct: 515 NRAGWSADAGSRYRGGFGDSRQSSQPSN--GFGRSSGFGDSRRGPQTSNGFGRSSFNRSG 572
Query: 590 RFGDLGDNHSSRSSGGFTDF 609
FGD G+ + S GG ++F
Sbjct: 573 GFGDFGEGN---SRGGNSEF 589
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/611 (58%), Positives = 426/611 (69%), Gaps = 56/611 (9%)
Query: 6 ILKR---SSSFLTSKRALTAALTSVETILHSHLAAAKSG-PVIPRHDDIIKSRFSAGTRE 61
+L+R SS T +R L AAL S + A G P PR R
Sbjct: 4 LLRRALASSPAATCRRPLLAALLSPPSAPPGPCQAPTPGSPAPPR-------------RA 50
Query: 62 FHAISRPLDFKSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGIS 120
H PL F+S+ A W V D+ +EGL+I++L IS IV LA RGI+
Sbjct: 51 LHGSPNPLGFRSTPASWTRPGPGEGVGV---DTGAEEGLEIARLWISPRIVEKLAARGIT 107
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180
KLFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ NEK+G GRNPL +VLA
Sbjct: 108 KLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSHNEKNGNGRNPLAIVLA 167
Query: 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
PTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMR L+YGVD VVGTPGR+IDL++R
Sbjct: 168 PTRELARQVEKEFRESAP-LDTLCVYGGVPINQQMRVLNYGVDIVVGTPGRIIDLLRRGV 226
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
LNLS++QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++NKYL +
Sbjct: 227 LNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLND 286
Query: 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL 360
P+ +DLVGDSDQKL +GISLYSIA+ + K SI+G LI EHA GGKCIVFTQTKRDADRL
Sbjct: 287 PVIIDLVGDSDQKLPEGISLYSIASDNFGKQSILGPLIKEHANGGKCIVFTQTKRDADRL 346
Query: 361 AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL 420
A+ M +SY C+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDL++HYE+
Sbjct: 347 AYVMGRSYPCQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEI 406
Query: 421 PNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV-EGGGD 479
PNTSE FVHR+GRT RAGKKGSAILIYT +Q R V+ IE+D+GCRFT+LP++ V + D
Sbjct: 407 PNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVSDEAAD 466
Query: 480 MYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGG-YRSPGSGRYGGNNSSYSGQ 538
M+N R +R +G R+GG + G G +G + S
Sbjct: 467 MFN--------------------VTRDTRSRSAGSRRTGGPFSREGYGGFGDHRS----- 501
Query: 539 GGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDTGSRQSGRFGDLGDNH 598
SS G FG +++RSG F G GG G +S SS G +S RFGD GD+
Sbjct: 502 ---SSFGDFGGSSDRSGGFRDSGSRYRGGSGGLRRS--SSELGRPSFSRSDRFGDFGDSD 556
Query: 599 SSRSSGGFTDF 609
SR G TDF
Sbjct: 557 FSRR--GNTDF 565
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/532 (62%), Positives = 400/532 (75%), Gaps = 35/532 (6%)
Query: 60 REFHAISRPLDFKSSIA-WQ---HAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALA 115
R FH + L F+S+ A W + + D+ ++GL+I++L S IV LA
Sbjct: 52 RAFHCSTPTLGFRSTPASWAGPCPGEGEGEGEGEGVDTGAEKGLEIARLGTSPRIVEKLA 111
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
RGI++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ +NEK+G GRNPL
Sbjct: 112 ARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNEKNGNGRNPL 171
Query: 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++LAPTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMRAL+YGVD VVGTPGRVIDL
Sbjct: 172 AIILAPTRELARQVEKEFRESAP-LDTLCVYGGVPINQQMRALNYGVDIVVGTPGRVIDL 230
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295
++R LNLS++QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++N
Sbjct: 231 LRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISN 290
Query: 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355
KYLK+P+ +DLVGDSDQKL +GISLYSIA+ + KPSIIG LI EHA GKCIVFTQTKR
Sbjct: 291 KYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIGPLIKEHANVGKCIVFTQTKR 350
Query: 356 DADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415
+ADRLA+ M +SY C+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDL+
Sbjct: 351 EADRLAYVMGRSYQCQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLV 410
Query: 416 IHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV- 474
+HYE+PNTSE FVHR+GRT RAGKKGSAILIYT +Q R V+ IE+D+GCRFT+LP++ V
Sbjct: 411 VHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVS 470
Query: 475 EGGGDMYNDM-------------GG---RSGYGSMRDRQYADTGFDRSSRMGDSGFGRSG 518
+ DM+N M GG R GYG D + GF R G S R G
Sbjct: 471 DEAADMFNVMRDTRSRSVGSRRTGGPFSREGYGDFED--HRSRGFGDFDRFGGSS-DRGG 527
Query: 519 GYRSPGSGRYGGNNSSYSGQGGGSSSGGFG----SNANRSGKFGGPGFSRSG 566
G+R GS +GG+ G SS FG S ++RSG FG FSR G
Sbjct: 528 GFRDSGSRYHGGSG------GFRRSSSDFGRPSLSRSDRSGDFGDSYFSRRG 573
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 347/627 (55%), Positives = 424/627 (67%), Gaps = 74/627 (11%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ D+GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGAA-------VGGDDGLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNC 370
DQKL +GISLYSIA+ Y KPSI+G LI EHA GGKCIVFTQTKR+ADRLA+AM +SY C
Sbjct: 295 DQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYAC 354
Query: 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHR 430
+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDL+IHYELPNTSE FVHR
Sbjct: 355 QALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHR 414
Query: 431 TGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV-EGGGDMYNDMGGRSG 489
+GRT RAGKKGSAILIYT+ QAR V+ IE+D+GC+FT+LP+I V + DM+N
Sbjct: 415 SGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTELPKIEVADEASDMFN------- 467
Query: 490 YGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNNSSYSGQGGGSSSGGFGS 549
+RD + G R+ G G G +G + GFGS
Sbjct: 468 --VVRDNRSRLAGSPRTGGSSFGRGGYGGFGEGRSRG-FGDFD-------------GFGS 511
Query: 550 NANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDT---------------------GSRQS 588
+ NR G+ G G+G+ + S+AFG + G+R+S
Sbjct: 512 SPNRGGRSRDAGSRYGSGFGDFRRP--SNAFGRSSSKQPDGFGFGDFGEGNFSRNGNRRS 569
Query: 589 GRFGDLGDNHSSRSSGGF-TDFFGSSG 614
F D G SR GF T FG SG
Sbjct: 570 RSFDDSGSTRYSRRPNGFGTSDFGRSG 596
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 328/566 (57%), Positives = 404/566 (71%), Gaps = 53/566 (9%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FHA RPL F+++ + + + ++GL+++KL IS IV LA RGI
Sbjct: 51 RAFHASPRPLGFRATTPASCPGTVTEA------GAGEDGLEVAKLGISPRIVERLAARGI 104
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++L
Sbjct: 105 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGTGRNPLAIIL 164
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMR L+YGVD VVGTPGR+IDL++R
Sbjct: 165 APTRELARQVEKEFKESAP-LDTLCVYGGVPINQQMRTLNYGVDVVVGTPGRIIDLLRRG 223
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLSE+QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR L+N+YLK
Sbjct: 224 NLNLSEIQFVVLDEADQMLAVGFDEDVEVIMEKLPQNRQSMLFSATMPSWIRKLSNQYLK 283
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
+P+ +DLVG+SDQKL +GISLYSIA+ Y K SI+G LI EHA GGKCIVFTQTKR+ADR
Sbjct: 284 DPVIIDLVGESDQKLPEGISLYSIASENYGKSSILGTLIKEHANGGKCIVFTQTKREADR 343
Query: 360 LAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE 419
LA++M +SY C+ LHGDI+Q+QRERTLS FR+GRFNIL+ATDVAARGLD+PNVDL++HYE
Sbjct: 344 LAYSMGRSYACQALHGDITQNQRERTLSGFREGRFNILVATDVAARGLDIPNVDLVVHYE 403
Query: 420 LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA-VEGGG 478
+PN+SE FVHR+GRT RAGKKG AIL+YT +Q+R V+ IE+D+GCRFT+LP+I+
Sbjct: 404 IPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRAVRVIEQDIGCRFTELPKISGTAEAA 463
Query: 479 DMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGS--GRYGGNNSSYS 536
DM+N R R RS G R+ GS GR SYS
Sbjct: 464 DMFN--------------------VSRDPR------SRSAGTRTDGSFFGR-----ESYS 492
Query: 537 GQGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDTGSRQSGRFGDLGD 596
G GG SS G + G GW T S FGD+ G G
Sbjct: 493 GFGGRSSRGFGDPDGFGGAPDG-------AGWSRDTGSRSRGGFGDSRRPSRPLDGSFGR 545
Query: 597 NHSSRSSGGFTDF----FGSSGNKQY 618
+ +R SGGF+DF FG + N +
Sbjct: 546 SSFNR-SGGFSDFGEGNFGRNDNPDF 570
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 279/384 (72%), Positives = 341/384 (88%), Gaps = 1/384 (0%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ +EGL+I+KL IS IV LA++GI+KLFPIQ+AVLEPAMQGRDM+GRA+TGTGKTLA
Sbjct: 92 AAAEEGLEIAKLGISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLA 151
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
FGIPILD II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+P L+T+CVYGGTPI
Sbjct: 152 FGIPILDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSP-LETLCVYGGTPIM 210
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+R L+YGVD V+GTPGRVIDL+KR AL+L+E++FVVLDEADQMLSVGF +DVE ILER
Sbjct: 211 QQIRQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILER 270
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P RQ++MFSATMP WIR LT KYL +P+TVDLVG+ DQKLA+GISL S+++ +KP+
Sbjct: 271 VPPQRQTLMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENRQKPA 330
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
++G+LI EHAKGGKCIVFTQTKRDADRL+H+M++S+ CE LHGDISQSQRERTL FRDG
Sbjct: 331 VLGELIKEHAKGGKCIVFTQTKRDADRLSHSMSRSFQCEALHGDISQSQRERTLGGFRDG 390
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
RFNILIATDVAARGLD+PNVDL+IHYELPN+SE FVHR+GRTGRAGKKG+AI++Y +Q+
Sbjct: 391 RFNILIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQS 450
Query: 453 RQVKSIERDVGCRFTQLPRIAVEG 476
R V+ IERDVGC+FT+LP+I VEG
Sbjct: 451 RAVRVIERDVGCKFTELPKINVEG 474
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/380 (72%), Positives = 335/380 (88%), Gaps = 1/380 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EGL+I+KL IS IV LA +GI+KLFPIQ+AVLEPAMQGRDM+GRA+TGTGKTLAFGIP
Sbjct: 92 EGLEIAKLGISSKIVERLASKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIP 151
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+P L+T+CVYGGTPI Q+R
Sbjct: 152 IMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSP-LETLCVYGGTPIMQQIR 210
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+YGVD V+GTPGRVIDL+KR +L+L+E++FVVLDEADQMLSVGF DVE ILER+P
Sbjct: 211 KLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDEADQMLSVGFDLDVETILERVPPQ 270
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ++MFSATMP WIR LT KYL NP+TVDLVG+ DQKLA+GISL ++++ EKP+++G+
Sbjct: 271 RQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQKLAEGISLLAVSSENREKPAVLGE 330
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
LI EHAKGGKCIVFTQTKRDADRL+H M++S+ CE LHGDISQSQRERTL+ FRDGRFNI
Sbjct: 331 LIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGDISQSQRERTLAGFRDGRFNI 390
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLD+PNVDL+IH+ELPN+SE FVHR+GRTGRAGKKG+AI++Y Q+R V+
Sbjct: 391 LIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGTAIVMYNYDQSRAVR 450
Query: 457 SIERDVGCRFTQLPRIAVEG 476
IERDVGC+FT+LP+I V+G
Sbjct: 451 VIERDVGCKFTELPKITVDG 470
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/382 (71%), Positives = 336/382 (87%), Gaps = 1/382 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+++KL IS IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPIL
Sbjct: 98 LEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIL 157
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L
Sbjct: 158 DAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQL 216
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+YGVD V+GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ
Sbjct: 217 NYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQ 276
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++MFSATMP WIR LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI
Sbjct: 277 TLMFSATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELI 336
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILI
Sbjct: 337 KEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILI 396
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+PNVDL+IH+ELPN+SE FVHR+GRTGRAGKKG AI++++ QQ+R ++ +
Sbjct: 397 ATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMV 456
Query: 459 ERDVGCRFTQLPRIAVEGGGDM 480
E DVGC+FT+LP+I VEG M
Sbjct: 457 ENDVGCKFTELPKINVEGSDLM 478
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/382 (71%), Positives = 336/382 (87%), Gaps = 1/382 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+++KL IS IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPIL
Sbjct: 98 LEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIL 157
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L
Sbjct: 158 DAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQL 216
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+YGVD V+GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ
Sbjct: 217 NYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQ 276
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++MFSATMP WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI
Sbjct: 277 TLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELI 336
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILI
Sbjct: 337 KEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILI 396
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+PNVDL+IH+ELPN+SE FVHR+GRTGRAGKKG AI++++ QQ+R ++ +
Sbjct: 397 ATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMV 456
Query: 459 ERDVGCRFTQLPRIAVEGGGDM 480
E DVGC+FT+LP+I VEG M
Sbjct: 457 ENDVGCKFTELPKINVEGSDLM 478
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 273/382 (71%), Positives = 336/382 (87%), Gaps = 1/382 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+++KL IS IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPIL
Sbjct: 146 LEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIL 205
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L
Sbjct: 206 DAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQL 264
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+YGVD V+GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ
Sbjct: 265 NYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQ 324
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++MFSATMP WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI
Sbjct: 325 TLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELI 384
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILI
Sbjct: 385 KEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILI 444
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+PNVDL+IH+ELPN+SE FVHR+GRTGRAGKKG AI++++ QQ+R ++ +
Sbjct: 445 ATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMV 504
Query: 459 ERDVGCRFTQLPRIAVEGGGDM 480
E DVGC+FT+LP+I VEG M
Sbjct: 505 ENDVGCKFTELPKINVEGSDLM 526
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/433 (66%), Positives = 346/433 (79%), Gaps = 19/433 (4%)
Query: 62 FHAISRPLDFKSSIAWQ---HAQSAVDDYVAYDDS---------------SKDEGLDISK 103
FH+ PL ++ + A + HAQ A D+ Y+D+ +K+EGL+++K
Sbjct: 50 FHSRPGPLGYRETGAARAGAHAQFAADEGWNYEDARKPAGAVSGAGAAAGAKEEGLEVAK 109
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L IS +IV LA +GI+KLFPIQKAVLEPAMQG+DM+GRA+TGTGKTLAFGIPI+D II+
Sbjct: 110 LGISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDAIIR 169
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
NE + GR PL + LAPTRELAKQV+KEF +S+P L T+CVYGGTPI QMRALDYGVD
Sbjct: 170 HNEINKPGRLPLAICLAPTRELAKQVDKEFVDSSP-LQTLCVYGGTPIQQQMRALDYGVD 228
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRVIDL+KR ALNLS VQFVVLDEADQMLSVGF EDVE+IL ++P RQ++MFS
Sbjct: 229 VVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPKRQTLMFS 288
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMPPWIR L KYLK+P+ VDLVG+ DQKLA+GISL SIAT + KP+++ QLI +HAK
Sbjct: 289 ATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHAK 348
Query: 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
GGKCIVFTQTKRDADRL++ M ++ C+ LHGDI+Q QRERTL FR+GRF+ LIATDVA
Sbjct: 349 GGKCIVFTQTKRDADRLSYTMGRTVQCQALHGDITQGQRERTLQGFREGRFSTLIATDVA 408
Query: 404 ARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVG 463
ARGLD+PNVDL+IHYELPN SE FVHR+GRTGRAGKKG AI++Y Q+R V+ IE DVG
Sbjct: 409 ARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQSRAVRGIENDVG 468
Query: 464 CRFTQLPRIAVEG 476
+F +LP+I VEG
Sbjct: 469 GKFQELPKINVEG 481
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/382 (73%), Positives = 328/382 (85%), Gaps = 1/382 (0%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K+EGL+++KL IS +IV LA RGI++LFPIQ+AVLEPAMQG+DMIGRA+TGTGKTLAFG
Sbjct: 95 KEEGLEVAKLGISDEIVTRLAARGITRLFPIQRAVLEPAMQGQDMIGRAKTGTGKTLAFG 154
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
IPILD IIK N+KH GR PL + LAPTRELAKQV+KEF +S+P L T+CVYGGTPI HQ
Sbjct: 155 IPILDAIIKHNKKHQPGRFPLAICLAPTRELAKQVDKEFVDSSP-LKTLCVYGGTPIQHQ 213
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L YGVD VVGTPGRVIDL+KR ALNLS VQFVVLDEADQMLSVGF E VE IL+ +P
Sbjct: 214 IRELQYGVDIVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEAVEEILQSVP 273
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ++MFSATMP WIR LT KYLKNP TVDLVG+ DQKLA+GISL SIAT + KP+++
Sbjct: 274 VKRQTLMFSATMPTWIRKLTQKYLKNPATVDLVGEDDQKLAEGISLLSIATENHAKPAVL 333
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
QLI +H KGGKCIVFTQTKRDADRLA M +S C+PLHGDISQ QRERTL+ FRDGRF
Sbjct: 334 AQLIQDHGKGGKCIVFTQTKRDADRLAFTMGRSIQCQPLHGDISQVQRERTLAGFRDGRF 393
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+ LIATDVAARGLD+PNVDL+IHYELPN+SE FVHR+GRTGRAGKKG+AI++++ QQ+R
Sbjct: 394 STLIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMHSYQQSRS 453
Query: 455 VKSIERDVGCRFTQLPRIAVEG 476
V+ IE+DVG +F +LP+I VEG
Sbjct: 454 VRGIEQDVGGKFKELPKINVEG 475
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 250/343 (72%), Positives = 304/343 (88%), Gaps = 1/343 (0%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
MQGRDM+GRA+TGTGKTLAFGIPI+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREF 60
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+S+P L+T+CVYGGTPI Q+R L+YGVD V+GTPGRVIDL+KR +L+L+E++FVVLDE
Sbjct: 61 LDSSP-LETLCVYGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDE 119
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQMLSVGF DVE ILER+P RQ++MFSATMP WIR LT KYL NP+TVDLVG+ DQK
Sbjct: 120 ADQMLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQK 179
Query: 314 LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
LA+GISL ++++ EKP+++G+LI EHAKGGKCIVFTQTKRDADRL+H M++S+ CE L
Sbjct: 180 LAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEAL 239
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HGDISQSQRERTL+ FRDGRFNILIATDVAARGLD+PNVDL+IH+ELPN+SE FVHR+GR
Sbjct: 240 HGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGR 299
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEG 476
TGRAGKKG+AI++Y Q+R V+ IERDVGC+FT+LP+I V+G
Sbjct: 300 TGRAGKKGTAIVMYNYDQSRAVRVIERDVGCKFTELPKITVDG 342
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 247/343 (72%), Positives = 305/343 (88%), Gaps = 1/343 (0%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
MQGRDM+GRA+TGTGKTLAFGIPI+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREF 60
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+S+P L+T+CVYGGTPI Q++ L+YGVD V+GTPGRVIDL+KR AL+L+E++FVVLDE
Sbjct: 61 LDSSP-LETLCVYGGTPIMQQIKQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDE 119
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQMLSVGF +DVE ILER+P Q++MFSATMP WIR LT K+L +P+TVDLVG+ DQK
Sbjct: 120 ADQMLSVGFDKDVETILERVPPQHQTLMFSATMPTWIRKLTQKFLNSPVTVDLVGEDDQK 179
Query: 314 LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
LA+GISL S+++ EKP+++G+LI EHAKGGKCIVFTQTKRDADRL+H M++S+ CE L
Sbjct: 180 LAEGISLLSVSSENREKPAVLGKLIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEAL 239
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HGDISQS+RERTL+ FRDGRFNILIATDVA+RGLD+PNVDL+IH+ELPN+SE FVHR+GR
Sbjct: 240 HGDISQSERERTLAGFRDGRFNILIATDVASRGLDIPNVDLVIHFELPNSSEIFVHRSGR 299
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEG 476
TGRAGKKG+AI++Y +Q+R V+ IERDVGC+FT+LP+I VEG
Sbjct: 300 TGRAGKKGTAIVMYNYEQSRAVRVIERDVGCKFTELPKINVEG 342
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 258/393 (65%), Positives = 317/393 (80%), Gaps = 8/393 (2%)
Query: 88 VAYDDSSKDEG--LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
+ D+ S D+G L IS+L I + ALA+RGI++LFPIQ+AVLEPAMQGRD+IGRA+T
Sbjct: 124 IRVDNESMDDGDELAISRLGIPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKT 183
Query: 146 GTGKTLAFGIPILDKIIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
GTGKTLAFGIPI++ II+ NE++ GR P LVLAPTRELAKQVE+EF ESAP L
Sbjct: 184 GTGKTLAFGIPIINNIIRENEENRVARRSGRAPRALVLAPTRELAKQVEREFMESAPMLS 243
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
TICVYGG IS Q R L GVD VGTPGR+IDLI R +L L EV+F+VLDEADQML+VG
Sbjct: 244 TICVYGGVAISSQQRLLTRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVG 303
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F EDVE ILE++P RQSM+FSATMP W++ L+ KYL + LT+DLVG+SD+KLAD I LY
Sbjct: 304 FEEDVEQILEQMPNQRQSMLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLADRIKLY 363
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
++AT K SI+ LI + KGGK IVFTQTKRDAD +A AMA++ CE LHGDISQSQ
Sbjct: 364 AVATVPQAKRSILNDLIAVYGKGGKTIVFTQTKRDADDVATAMARTLGCEALHGDISQSQ 423
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RE+TL+AFR+G F++L+ATDVAARGLD+PNVDL+IHYE+PN ETFVHR+GRTGRAGK G
Sbjct: 424 REKTLNAFREGNFSVLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDG 483
Query: 442 SAILIYTDQQARQVKSIERDVGCRFTQL--PRI 472
+AIL+Y+D+Q R ++ IERDVGC+FT++ PR+
Sbjct: 484 TAILMYSDRQTRTMRLIERDVGCKFTKISAPRV 516
>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 619
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/374 (66%), Positives = 300/374 (80%), Gaps = 3/374 (0%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
KDE L I+ L +S+DIV ALA+RGI+ LFPIQ+AVLEPAM+G+D+I RA+TGTGKTLAFG
Sbjct: 1 KDE-LAINSLGVSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFG 59
Query: 155 IPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IPI+ I+ N ++ +GR+P LVLAPTRELAKQVE+EF ESAP L T+CVYGG PIS
Sbjct: 60 IPIIRHIVDGNAENAPRQGRSPRALVLAPTRELAKQVEREFMESAPMLSTVCVYGGVPIS 119
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q R L+ GVD VGTPGR+IDLI R +L L +V F+VLDEADQML+VGF EDVE IL++
Sbjct: 120 MQQRQLERGVDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQ 179
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP+ RQSM+FSATMP W++ L+ KYL PLT+DLVGDSD+KLADGI +I K S
Sbjct: 180 LPKQRQSMLFSATMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAIQLPASAKRS 239
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT H KGGK IVFTQTKRDAD +A AM +C LHGDISQ QRE+TLSAFRDG
Sbjct: 240 ILSDLITVHGKGGKTIVFTQTKRDADDVAMAMGNLVSCGALHGDISQVQREKTLSAFRDG 299
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +L+ATDVAARGLDVPNVDL+IHYE+PN SETFVHRTGRTGRAG+ G+ IL++T QQ
Sbjct: 300 KIAVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMFTSQQV 359
Query: 453 RQVKSIERDVGCRF 466
R +++IE +V C+F
Sbjct: 360 RTMRTIENNVKCKF 373
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/387 (63%), Positives = 303/387 (78%), Gaps = 4/387 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+++++ L +++L + +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 110 AAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 169
Query: 153 FGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
FGIPI+ ++ + +EK GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 170 FGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 229
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLIK N+L L EVQ +VLDEADQML+VGF EDVEV
Sbjct: 230 VSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEV 289
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE+LP RQSM+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI LY+I T+
Sbjct: 290 ILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTAT 349
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSA 388
K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+ S E LHGDISQ QRERTL+
Sbjct: 350 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNG 409
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FR G+F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK+G+AIL++T
Sbjct: 410 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 469
Query: 449 DQQARQVKSIERDVGCRFTQLPRIAVE 475
Q R VKS+ERDVGC+F + A+E
Sbjct: 470 SSQRRTVKSLERDVGCKFEFISPPAIE 496
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/387 (64%), Positives = 301/387 (77%), Gaps = 3/387 (0%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S + LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 103 ESVNPDELDISKLDLPSRLVESLRSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTL 162
Query: 152 AFGIPILDKIIK--FNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
AFGIPI+ + + H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 163 AFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 222
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLI N+L LSEVQ++VLDEADQML+VGF EDVE+
Sbjct: 223 VSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEM 282
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+GI LY+IA +
Sbjct: 283 ILENLPSQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATAT 342
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSA 388
K +I+ L+T +AKGGK IVFTQTKRDAD ++ ++ S E LHGDISQ QRERTL+
Sbjct: 343 SKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNG 402
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FR G+F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK+G+AIL+YT
Sbjct: 403 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYT 462
Query: 449 DQQARQVKSIERDVGCRFTQLPRIAVE 475
Q R V+S+ERDVGC+F + A+E
Sbjct: 463 SSQRRTVRSLERDVGCKFEFVSSPAME 489
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/387 (64%), Positives = 301/387 (77%), Gaps = 3/387 (0%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S + LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 104 ESVHPDELDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTL 163
Query: 152 AFGIPILDKIIK--FNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
AFGIPI+ + + H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 164 AFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 223
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLI N+L LSEVQ++VLDEADQML+VGF EDVE+
Sbjct: 224 VSYVTQQGALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEM 283
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+GI LY+IA +
Sbjct: 284 ILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATAT 343
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSA 388
K +I+ L+T +AKGGK IVFTQTKRDAD ++ ++ S E LHGDISQ QRERTL+
Sbjct: 344 SKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNG 403
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FR G+F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK+G+AIL+YT
Sbjct: 404 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYT 463
Query: 449 DQQARQVKSIERDVGCRFTQLPRIAVE 475
Q R V+S+ERDVGC+F + A+E
Sbjct: 464 SSQRRTVRSLERDVGCKFEFVSAPAME 490
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/377 (62%), Positives = 306/377 (81%), Gaps = 5/377 (1%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S DE L+++KL + Q ++ +L +RGIS+LFPIQ+AVL PA++GRD+I RA+TGTGKTLAF
Sbjct: 121 SADE-LEVAKLGLPQKLIDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAF 179
Query: 154 GIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
GIPIL ++ + +++ GR P LVLAPTRELAKQVEKE E+AP L+T+CVYGG
Sbjct: 180 GIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKETAPYLNTVCVYGGV 239
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDL+ N+L L EV+F+VLDEADQML+VGF EDVEVI
Sbjct: 240 SYTSQQSALSRGVDVVVGTPGRIIDLVNGNSLKLGEVEFLVLDEADQMLAVGFEEDVEVI 299
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE+LP+ RQSM+FSATMP WI+ L+ KYL NPLT+DLVGD ++KLA+GI LY+I+++
Sbjct: 300 LEKLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISSTAAS 359
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +++ +IT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+ F
Sbjct: 360 KRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGDISQHQRERTLNGF 419
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G+F++L+ATDVA+RGLD+PNVDL++HYE+PN ETFVHR+GRTGRAGK+G+A+L+YT
Sbjct: 420 RQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGKEGTALLMYTS 479
Query: 450 QQARQVKSIERDVGCRF 466
Q R V+S+ERDVGC F
Sbjct: 480 NQRRTVRSLERDVGCHF 496
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/379 (64%), Positives = 298/379 (78%), Gaps = 3/379 (0%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ KDE L I L +S+DIV ALA+RGI+ LFPIQ+AVLEPAM+G+D+I RA+TGTGKTLA
Sbjct: 21 AGKDE-LAIDSLGVSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLA 79
Query: 153 FGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
FGIPI+ II +++ GR+P LVLAPTRELAKQVE+EF ESAP L T+CVYGG
Sbjct: 80 FGIPIIQHIIDAHKESAPRHGRSPRALVLAPTRELAKQVEREFMESAPMLSTVCVYGGVS 139
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
IS Q R L+ GVD VGTPGR+IDLI R +L L V F+VLDEADQML+VGF EDVE IL
Sbjct: 140 ISMQQRQLERGVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERIL 199
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
++LP+NRQSM+FSATMP W++ L+ KYL PL ++LVGD+D KLA+GI+ +I K
Sbjct: 200 QQLPKNRQSMLFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPATAK 259
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
SI+ LIT HAKGGK IVFTQTKRDAD +A AM C LHGDISQ QRE+TL+AFR
Sbjct: 260 RSILSDLITVHAKGGKTIVFTQTKRDADDVAMAMGNLVACGALHGDISQLQREKTLNAFR 319
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+G +L+ATDVAARGLDVPNVDL+IHYE+PN SETFVHRTGRTGRAGK G+ IL++T+Q
Sbjct: 320 EGNITVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMFTNQ 379
Query: 451 QARQVKSIERDVGCRFTQL 469
Q R +++IE +V CRF +
Sbjct: 380 QMRTMRTIESNVKCRFQMI 398
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/397 (61%), Positives = 305/397 (76%), Gaps = 2/397 (0%)
Query: 81 QSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
+S +D+ + S + LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+I
Sbjct: 90 ESEDEDFPSRTTSINADELDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDII 149
Query: 141 GRARTGTGKTLAFGIPILDKIIKFNEK--HGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
RA+TGTGKTLAFGIPI++ + + + R R P LVLAPTRELAKQVEKE ESAP
Sbjct: 150 ARAKTGTGKTLAFGIPIINGLDDGQDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESAP 209
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L T+C+YGG Q AL GVD VVGTPGR+IDLI N L LSEV+++VLDEADQML
Sbjct: 210 YLKTVCIYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQML 269
Query: 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+VGF EDVEVILE+LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+GI
Sbjct: 270 AVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGI 329
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
LY+I+ + K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+ S E LHGDIS
Sbjct: 330 KLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDIS 389
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
Q QRERTL+ FR G+F +L+ATDVA+RGLD+PNVDLIIHYELPN ETFVHR+GRTGRAG
Sbjct: 390 QHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 449
Query: 439 KKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
K G+AIL++T Q R V+S+ERDVGC+F + +VE
Sbjct: 450 KLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVE 486
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/386 (62%), Positives = 308/386 (79%), Gaps = 5/386 (1%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S DE L+++KL + Q +V +L +RGIS+LFPIQ+AVL PA++GRD+I RA+TGTGKTLAF
Sbjct: 121 SADE-LEVAKLGLPQKLVDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAF 179
Query: 154 GIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
GIPIL ++ + +++ GR P LVLAPTRELAKQVEKE E+AP L+T+CVYGG
Sbjct: 180 GIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKETAPYLNTVCVYGGV 239
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDLI +L L EV+F+VLDEADQML+VGF EDVEVI
Sbjct: 240 SYTSQQSALSRGVDVVVGTPGRIIDLINGKSLKLGEVEFLVLDEADQMLAVGFEEDVEVI 299
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE LP+ RQSM+FSATMP WI+ L+ KYL NPLT+DLVGD ++KLA+GI LY+I+++
Sbjct: 300 LETLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISSTAAS 359
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +++ +IT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+ F
Sbjct: 360 KRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGDISQHQRERTLNGF 419
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G+F++L+ATDVA+RGLD+PNVDL++HYE+PN ETFVHR+GRTGRAGK+G+A+L+YT
Sbjct: 420 RQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGKEGTALLMYTS 479
Query: 450 QQARQVKSIERDVGCRFTQLPRIAVE 475
Q R V+S+ERDVGC F + +VE
Sbjct: 480 NQRRTVRSLERDVGCHFEYVGAPSVE 505
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/373 (64%), Positives = 298/373 (79%), Gaps = 2/373 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 91 EEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 150
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 151 PMIKQIIEQDEGRSLGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYNV 210
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I ++ K +I
Sbjct: 271 PAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTI 330
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 331 LSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGK 390
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVA+RGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R
Sbjct: 391 FTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNNQRR 450
Query: 454 QVKSIERDVGCRF 466
VKS+ERDVGCRF
Sbjct: 451 TVKSLERDVGCRF 463
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/388 (62%), Positives = 306/388 (78%), Gaps = 3/388 (0%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + D LDISKL + +V +L +RGI+ LFPIQ+AVL PA++G+D+I RA+TGTGKT
Sbjct: 86 DTNVSDHELDISKLGLPSPLVHSLQQRGITSLFPIQRAVLVPALEGKDIIARAKTGTGKT 145
Query: 151 LAFGIPILDKIIKFNEK--HGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
LAFGIPIL + +E+ H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 146 LAFGIPILKGLTDDDEQSSHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYG 205
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL +GVD VVGTPGR+IDL+ N+L LSEVQ++VLDEAD+ML+VGF EDVE
Sbjct: 206 GVSYVTQQGALSHGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGFEEDVE 265
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VIL+++P RQ+M+FSATMP W++ L+ KYL NPLT+DLVG+ ++KLA+GI LY+++ +
Sbjct: 266 VILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATA 325
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +++ LIT +AKGGK IVFTQTK+DAD ++ A+ S E LHGDISQ QRERTL+
Sbjct: 326 SSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLN 385
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G+F +L+ATDVAARGLD+PNVDL+IHYELPN +ETFVHR+GRTGRAGK+G+AIL+Y
Sbjct: 386 GFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMY 445
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVE 475
T Q R V+S+ERDVGC+F + A+E
Sbjct: 446 TSSQRRTVRSLERDVGCKFEFVSPPAME 473
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/373 (64%), Positives = 298/373 (79%), Gaps = 2/373 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 91 EEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 150
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 151 PMIKQIIEQDEGRSLGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYNV 210
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I ++ K +I
Sbjct: 271 PAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTI 330
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 331 LSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGK 390
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVA+RGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R
Sbjct: 391 FTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNNQRR 450
Query: 454 QVKSIERDVGCRF 466
VKS+ERDVGCRF
Sbjct: 451 TVKSLERDVGCRF 463
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/388 (62%), Positives = 302/388 (77%), Gaps = 5/388 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
++S+DE LDISKL + Q +V L RGI+ LFPIQ+AVL P ++GRD+I RA+TGTGKTL
Sbjct: 90 NTSEDE-LDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTL 148
Query: 152 AFGIPILDKIIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
AFGIPI+ ++ + E G GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 149 AFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVCVYG 208
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G + Q AL GVD VVGTPGR+IDL+K N+L L EV+++VLDEADQMLS GF EDVE
Sbjct: 209 GVSYATQQNALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVE 268
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+I+T+
Sbjct: 269 VILESLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTA 328
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +I+ L+T +AKG K I+FT+TKRDAD ++ A+ +S E LHGDISQ QRERTL+
Sbjct: 329 TSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQSIASEALHGDISQHQRERTLN 388
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G+F +L+ATDVA+RGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK+G+AIL++
Sbjct: 389 GFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 448
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVE 475
T+ Q R V+S+ERD GC+F + A+E
Sbjct: 449 TNSQRRTVRSLERDAGCKFEFVSPPAIE 476
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/373 (64%), Positives = 293/373 (78%), Gaps = 2/373 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ L ISKL + Q +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 117 DDELAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGI 176
Query: 156 PILDKIIKFNEKHGR--GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
PI+ I + ++ R GR P LVLAPTRELAKQVEKE +ESAP L T+CVYGG
Sbjct: 177 PIIKCITEDDKSSQRRTGRLPRVLVLAPTRELAKQVEKEINESAPYLSTVCVYGGVSYIT 236
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQMLS GF EDVEVILE L
Sbjct: 237 QRNALSRGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENL 296
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+I+T+ K SI
Sbjct: 297 PSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKRSI 356
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ L+T +AKGGK I+FTQTKRDAD ++ + S E LHGDISQ QRERTL+ FR G+
Sbjct: 357 LSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNSIASEALHGDISQHQRERTLNGFRQGK 416
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+G+A+L++T Q R
Sbjct: 417 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMFTSSQRR 476
Query: 454 QVKSIERDVGCRF 466
VKS+ERDVGCRF
Sbjct: 477 TVKSLERDVGCRF 489
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/377 (63%), Positives = 298/377 (79%), Gaps = 3/377 (0%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ L ISKL++ Q + AL +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 106 AADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 165
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCL---VLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
FGIPIL K+ + +E R VL PTRELAKQVEKE ESAP L+T+CVYGG
Sbjct: 166 FGIPILKKLTEDDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGV 225
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q AL GVD VVGTPGR+IDLI N+LNL EV+++VLDEADQML+VGF EDVEVI
Sbjct: 226 SYITQQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVI 285
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE+LP RQ+M+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI L++I T+
Sbjct: 286 LEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATS 345
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +I+ L+T +AKGGK IVFTQTKRDAD ++ A+A S E LHGDISQ QRERTL+ F
Sbjct: 346 KQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGF 405
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+G+AIL++T+
Sbjct: 406 RQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTN 465
Query: 450 QQARQVKSIERDVGCRF 466
Q R V+S+ERDVGC+F
Sbjct: 466 SQRRTVRSLERDVGCKF 482
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/388 (62%), Positives = 302/388 (77%), Gaps = 3/388 (0%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + D LDISKL + +V +L +RGI LFPIQ+AVL PA++G+D+I RA+TGTGKT
Sbjct: 84 DTNVSDHELDISKLGLPSPLVHSLQKRGIISLFPIQRAVLVPALEGKDIIARAKTGTGKT 143
Query: 151 LAFGIPILDKIIKFNEK--HGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
LAFGIPIL + +E+ H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 144 LAFGIPILKGLTNDDEQSPHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYG 203
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL GVD VVGTPGR+IDL+ N+L LSEVQ++VLDEADQML+VGF EDVE
Sbjct: 204 GVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGFEEDVE 263
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VIL+++P RQ+M+FSATMP W++ L+ KYL NPLT+DLVG+ ++KLA+GI LY++ +
Sbjct: 264 VILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALLATA 323
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +++ LIT +AKGGK IVFTQTK+DAD ++ A+ S E LHGDISQ QRERTL+
Sbjct: 324 TSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLN 383
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G+F +L+ATDVAARGLD+PNVDL+IHYELPN +ETFVHR+GRTGRAGK+G+AIL+Y
Sbjct: 384 GFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMY 443
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVE 475
T Q R V+S+ERDVG +F + AVE
Sbjct: 444 TSSQRRTVRSLERDVGSKFEFVSPPAVE 471
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/374 (64%), Positives = 297/374 (79%), Gaps = 3/374 (0%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
KDE L IS+L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFG
Sbjct: 88 KDE-LAISRLGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFG 146
Query: 155 IPILDKIIKFNE--KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IP++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 147 IPMIKQIIEQDEGRTPGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYN 206
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++
Sbjct: 207 TQQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQ 266
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI L++I + K +
Sbjct: 267 LPAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLFAIPLTTTSKRT 326
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G
Sbjct: 327 ILSDLITVYAKGGKTIVFTRTKRDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQG 386
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F +L+ATDVA+RGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T Q
Sbjct: 387 KFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTNQR 446
Query: 453 RQVKSIERDVGCRF 466
R VKS+ERDVGC+F
Sbjct: 447 RTVKSLERDVGCKF 460
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/388 (61%), Positives = 300/388 (77%), Gaps = 5/388 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
++S+DE LD+SKL + +V L RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 127 NTSEDE-LDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTL 185
Query: 152 AFGIPILDKIIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
AFGIPI+ ++ + E G GR P LVLAPTRELAKQVEKE ESAP L ++CVYG
Sbjct: 186 AFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSSVCVYG 245
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL GVD VVGTPGR+IDL+K N+L L EV+++VLDEADQMLS GF EDVE
Sbjct: 246 GVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVE 305
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+++ +
Sbjct: 306 VILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATA 365
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +I+ L+T +AKGGK I+FTQTKRDAD ++ A+ + E LHGDISQ QRERTL+
Sbjct: 366 ASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGDISQHQRERTLN 425
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G+F +L+ATDVA+RGLD+PNVDLIIHYELPN +ETFVHR+GRTGRAGK+G+AIL++
Sbjct: 426 GFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMF 485
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVE 475
T Q R V+S+ERD GC+F + A+E
Sbjct: 486 TSSQRRTVRSLERDAGCKFEFVSPPAIE 513
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/377 (63%), Positives = 298/377 (79%), Gaps = 3/377 (0%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ L ISKL++ Q + AL +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 106 AADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 165
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCL---VLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
FGIPIL K+ + +E R VL PTRELAKQVEKE ESAP L+T+CVYGG
Sbjct: 166 FGIPILKKLTEDDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGV 225
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q AL GVD VVGTPGR+IDLI N+LNL EV+++VLDEADQML+VGF EDVEVI
Sbjct: 226 SYITQQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVI 285
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE+LP RQ+M+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI L++I T+
Sbjct: 286 LEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATS 345
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +I+ L+T +AKGGK IVFTQTKRDAD ++ A+A S E LHGDISQ QRERTL+ F
Sbjct: 346 KQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGF 405
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+G+AIL++T+
Sbjct: 406 RQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTN 465
Query: 450 QQARQVKSIERDVGCRF 466
Q R V+S+ERDVGC+F
Sbjct: 466 SQRRTVRSLERDVGCKF 482
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/396 (61%), Positives = 307/396 (77%), Gaps = 15/396 (3%)
Query: 85 DDYVAYDDS--------SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136
DDY Y+D + D LD+S L++SQ++V ALA RGI+ LFPIQ+AVL PA++G
Sbjct: 123 DDY-DYEDEIGNDVVVDNNDGNLDLSGLNLSQELVEALANRGITHLFPIQRAVLVPALEG 181
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKE 192
RD+IGRA+TGTGKTLAFGIPI++++ K N+++ R P LVLAPTRELAKQVEKE
Sbjct: 182 RDLIGRAKTGTGKTLAFGIPIIERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKE 241
Query: 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
F ESAP L T C+YGG Q AL GVD VVGTPGR+IDL+ +L L+EVQF+VLD
Sbjct: 242 FKESAPFLSTACIYGGVSYVSQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLD 301
Query: 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
EADQML+VGF EDVE+IL+ LP RQSM+FSATMP W++ L+ K+L NP+T+DLVG++++
Sbjct: 302 EADQMLAVGFEEDVEIILDNLPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEE 361
Query: 313 KLADGISLYSIA--TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNC 370
KLA+GI LY++A TS K SI+G LIT AKGGK IVFTQTKRDAD ++ ++ + C
Sbjct: 362 KLAEGIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIAC 421
Query: 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHR 430
E LHGDISQ QRERTL+ FR+G+F+ L+ATDVAARGLD+ NVDL+IHYE PN ETFVHR
Sbjct: 422 EALHGDISQHQRERTLAGFREGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHR 481
Query: 431 TGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
+GRTGRAGK+G AIL+Y R+V+S+E +VGCRF
Sbjct: 482 SGRTGRAGKEGIAILMYPSNGKRKVRSLEHEVGCRF 517
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/382 (62%), Positives = 299/382 (78%), Gaps = 2/382 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 85 NEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++I+ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 265 PAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTV 324
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 325 LSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 384
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T Q R
Sbjct: 385 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKR 444
Query: 454 QVKSIERDVGCRFTQLPRIAVE 475
VKS+ERDVGC F + ++E
Sbjct: 445 TVKSLERDVGCNFEFISPPSIE 466
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/382 (62%), Positives = 299/382 (78%), Gaps = 2/382 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 85 NEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++I+ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 265 PAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTV 324
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 325 LSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 384
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T Q R
Sbjct: 385 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKR 444
Query: 454 QVKSIERDVGCRFTQLPRIAVE 475
VKS+ERDVGC F + ++E
Sbjct: 445 TVKSLERDVGCNFEFISPPSIE 466
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/386 (63%), Positives = 298/386 (77%), Gaps = 7/386 (1%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
D+ V DD E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+
Sbjct: 91 DNNVVADDG---EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAK 147
Query: 145 TGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200
TGTGKTLAFGIPI+ ++ + ++ GR P LVLAPTRELAKQVEKE ESAP L
Sbjct: 148 TGTGKTLAFGIPIIKRLTEEAGDYSAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYL 207
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+V
Sbjct: 208 STVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAV 267
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
GF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI L
Sbjct: 268 GFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL 327
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQS 380
Y+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ
Sbjct: 328 YAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQH 387
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK 440
QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 441 GSAILIYTDQQARQVKSIERDVGCRF 466
GSAIL++T Q R V+S+ERDVGC F
Sbjct: 448 GSAILMHTSSQKRTVRSLERDVGCHF 473
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 243/379 (64%), Positives = 293/379 (77%), Gaps = 12/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIP
Sbjct: 100 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIP 159
Query: 157 ILDKIIKFNEKHG---------RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
I+ ++ E+ G GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 160 IIKRL---TEEAGDYTAFRSLRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYG 216
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G + Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+VGF E VE
Sbjct: 217 GVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVE 276
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
ILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI LY+IAT+
Sbjct: 277 SILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTS 336
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+
Sbjct: 337 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLN 396
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
AFR G+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+GSAIL++
Sbjct: 397 AFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMH 456
Query: 448 TDQQARQVKSIERDVGCRF 466
T Q R V+S+ERDVGC F
Sbjct: 457 TSSQKRTVRSLERDVGCHF 475
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/374 (64%), Positives = 292/374 (78%), Gaps = 4/374 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIP
Sbjct: 100 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIP 159
Query: 157 ILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
I+ ++ + + GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYT 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+VGF E VE ILE
Sbjct: 220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI LY+IAT+ K +
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRT 339
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+AFR G
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQG 399
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+GSAIL++T Q
Sbjct: 400 KFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQK 459
Query: 453 RQVKSIERDVGCRF 466
R V+S+ERDVGC F
Sbjct: 460 RTVRSLERDVGCHF 473
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/374 (64%), Positives = 292/374 (78%), Gaps = 4/374 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIP
Sbjct: 100 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIP 159
Query: 157 ILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
I+ ++ + + GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYT 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+VGF E VE ILE
Sbjct: 220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI LY+IAT+ K +
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRT 339
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+AFR G
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQG 399
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+GSAIL++T Q
Sbjct: 400 KFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQK 459
Query: 453 RQVKSIERDVGCRF 466
R V+S+ERDVGC F
Sbjct: 460 RTVRSLERDVGCHF 473
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/374 (64%), Positives = 292/374 (78%), Gaps = 4/374 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIP
Sbjct: 100 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIP 159
Query: 157 ILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
I+ ++ + + GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYT 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+VGF E VE ILE
Sbjct: 220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI LY+IAT+ K +
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRT 339
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+AFR G
Sbjct: 340 ILSDLITVYAKGGKNIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQG 399
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+GSAIL++T Q
Sbjct: 400 KFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQK 459
Query: 453 RQVKSIERDVGCRF 466
R V+S+ERDVGC F
Sbjct: 460 RTVRSLERDVGCHF 473
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/374 (64%), Positives = 292/374 (78%), Gaps = 4/374 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIP
Sbjct: 100 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIP 159
Query: 157 ILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
I+ ++ + + GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYT 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+VGF E VE ILE
Sbjct: 220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI LY+IAT+ K +
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRT 339
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+AFR G
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQG 399
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+GSAIL++T Q
Sbjct: 400 KFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQK 459
Query: 453 RQVKSIERDVGCRF 466
R V+S+ERDVGC F
Sbjct: 460 RTVRSLERDVGCHF 473
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/382 (61%), Positives = 300/382 (78%), Gaps = 2/382 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGI
Sbjct: 66 EDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGI 125
Query: 156 PILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 126 PMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNV 185
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 186 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 245
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 246 PAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTV 305
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 306 LSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 365
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R
Sbjct: 366 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRR 425
Query: 454 QVKSIERDVGCRFTQLPRIAVE 475
V+S+ERDVGCRF + A+E
Sbjct: 426 TVRSLERDVGCRFDFISPPAIE 447
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/382 (61%), Positives = 300/382 (78%), Gaps = 2/382 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGI
Sbjct: 101 EDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGI 160
Query: 156 PILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 161 PMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNV 220
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 221 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 280
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 281 PAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTV 340
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 341 LSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 400
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R
Sbjct: 401 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRR 460
Query: 454 QVKSIERDVGCRFTQLPRIAVE 475
V+S+ERDVGCRF + A+E
Sbjct: 461 TVRSLERDVGCRFDFISPPAIE 482
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/373 (63%), Positives = 295/373 (79%), Gaps = 2/373 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGI
Sbjct: 85 EEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALGGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLMEQDDGRSTRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI L++I + K +I
Sbjct: 265 PADRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLHAIPLTATSKRTI 324
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 325 LSDLITVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGK 384
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T Q R
Sbjct: 385 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKR 444
Query: 454 QVKSIERDVGCRF 466
V S+ERDVGC+F
Sbjct: 445 TVMSLERDVGCKF 457
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/388 (61%), Positives = 308/388 (79%), Gaps = 6/388 (1%)
Query: 88 VAYDDSSKDEG--LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
+ D+ S D+ L ++ L I Q +V ALA+RGI KLFPIQ+AVL+PAMQGRD+IGRA+T
Sbjct: 34 IRVDNESVDDEDELAVANLGIPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKT 93
Query: 146 GTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
GTGKTLAFGIPI+ I+K +E GR P LVLAPTRELAKQVE+EF ESAP L
Sbjct: 94 GTGKTLAFGIPIIHNILKAHEADRTSRRSGRAPRALVLAPTRELAKQVEREFMESAPMLS 153
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
T+CVYGG I+ Q R L GVD VGTPGR+IDLI+R +L+L +V ++VLDEADQML+VG
Sbjct: 154 TVCVYGGVSITTQQRQLQRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVG 213
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F EDVE ILE++P+ RQSM+FSATMP W++ L+ KYLK+PLT+DLVGDS++KLA+GI +
Sbjct: 214 FEEDVERILEQMPEERQSMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKML 273
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
++ K +++ LI+ H GK IVFTQTKRDAD +A + ++ CE LHGDI+QSQ
Sbjct: 274 AVCIPPAAKRTVLNDLISVHGSVGKTIVFTQTKRDADDVASVLGRTLGCEALHGDITQSQ 333
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RERTL++FR+GRF++L+ATDVAARGLD+PNVDL++HYE+PN ETFVHR+GRTGRAGK G
Sbjct: 334 RERTLASFREGRFSVLVATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGKDG 393
Query: 442 SAILIYTDQQARQVKSIERDVGCRFTQL 469
+AIL++++ Q R +++IE DVGC+FT +
Sbjct: 394 TAILMFSENQKRTMRNIEMDVGCKFTLM 421
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/396 (59%), Positives = 300/396 (75%), Gaps = 16/396 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQ--------------KAVLEPAMQGRDMIG 141
++ L I++L + + +V+ L +RGI+ LFPIQ +AVL PA+ GRD+I
Sbjct: 108 EDELAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIA 167
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPS 199
RA+TGTGKTLAFGIP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP
Sbjct: 168 RAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK 227
Query: 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
L T+CVYGG + Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+
Sbjct: 228 LSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLA 287
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
VGF EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI
Sbjct: 288 VGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIK 347
Query: 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQ 379
LY+I + K +++ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ
Sbjct: 348 LYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQ 407
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
QRERTL+ FR G+F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK
Sbjct: 408 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 467
Query: 440 KGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
G+AIL++T+ Q R V+S+ERDVGCRF + A+E
Sbjct: 468 AGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIE 503
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/372 (61%), Positives = 289/372 (77%), Gaps = 2/372 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L I+ L I IV ALA+RGI LFPIQ+AV +PAMQG D+I RA+TGTGKTLAFGIP
Sbjct: 2 EELAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIP 61
Query: 157 ILDKII--KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
ILD I K + + P ++LAPTRELAKQVE E +AP L +C+YGG I Q
Sbjct: 62 ILDNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVCIYGGVSIEGQ 121
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
R L V+ VVGTPGRVID+++R L L+EV+F +LDEADQML+VGFAE+VE I+++LP
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
R +M+FSATMP WIR+LT+KYLKNP +DLVG+++ K+A+GI LY+++T+ K ++
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLL 241
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L+T +AKGGK IVFT+TKRD D +A M++S CE LHGDISQ QRE+TLS FRDGRF
Sbjct: 242 ADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFRDGRF 301
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
N+L+ATDVAARGLD+PNVDLI+HYE+P SETFVHR+GRTGRAGKKG+ IL+YT Q R
Sbjct: 302 NVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKRV 361
Query: 455 VKSIERDVGCRF 466
+++IE +VGC+F
Sbjct: 362 LRTIESEVGCKF 373
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/372 (61%), Positives = 289/372 (77%), Gaps = 2/372 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L I+ L I IV ALA+RGI LFPIQ+AV +PAMQG D+I RA+TGTGKTLAFGIP
Sbjct: 2 EELAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIP 61
Query: 157 ILDKII--KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
ILD I K + + P ++LAPTRELAKQVE E +AP L +C+YGG I Q
Sbjct: 62 ILDNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVCIYGGVSIEGQ 121
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
R L V+ VVGTPGRVID+++R L L+EV+F +LDEADQML+VGFAE+VE I+++LP
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
R +M+FSATMP WIR+LT+KYLKNP +DLVG+++ K+A+GI LY+++T+ K ++
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLL 241
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L+T +AKGGK IVFT+TKRD D +A M++S CE LHGDISQ QRE+TLS FRDGRF
Sbjct: 242 ADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFRDGRF 301
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
N+L+ATDVAARGLD+PNVDLI+HYE+P SETFVHR+GRTGRAGKKG+ IL+YT Q R
Sbjct: 302 NVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKRV 361
Query: 455 VKSIERDVGCRF 466
+++IE +VGC+F
Sbjct: 362 LRTIESEVGCKF 373
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/434 (56%), Positives = 304/434 (70%), Gaps = 51/434 (11%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+++++ L +++L + +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 110 AAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 169
Query: 153 FGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
FGIPI+ ++ + +EK GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 170 FGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 229
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLIK N+L L EVQ +VLDEADQML+VGF EDVEV
Sbjct: 230 VSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEV 289
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL---------------------- 306
ILE+LP RQSM+FSATMP W++ L KYL NPLT+DL
Sbjct: 290 ILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLD 349
Query: 307 -VGDSDQKLADGISLYSIATSMYEKPSIIGQLITE---------------HAKGGKCIVF 350
VGD D+KLA+GI LY+I T+ K +I+ LIT+ +AKGGK IVF
Sbjct: 350 HVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVF 409
Query: 351 TQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
TQTKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+P
Sbjct: 410 TQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 469
Query: 411 NVDL---------IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461
NVDL IIHYELPN ETFVHR+GRTGRAGK+G+AIL++T Q R VKS+ERD
Sbjct: 470 NVDLKYVDLLFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERD 529
Query: 462 VGCRFTQLPRIAVE 475
VGC+F + A+E
Sbjct: 530 VGCKFEFISPPAIE 543
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/393 (58%), Positives = 296/393 (75%), Gaps = 6/393 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEPAMQGRDMIGRARTGTGKTLAFGI 155
E L ++KL I +IV ALA++ I LFP+Q+ AV +PAM+GRD I RA+TGTGKTLAFG+
Sbjct: 2 EELAVAKLGIDPEIVRALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGL 61
Query: 156 PILDKI-IKFNEKHGRGR--NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
PIL I ++ E R + P C+V+APTRELAKQVEKE +AP L +C+YGG I
Sbjct: 62 PILHTITVERREATSRTQPGCPRCIVMAPTRELAKQVEKELTSTAPHLTLVCIYGGVSIE 121
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q R+L+ +D VVGTPGRVID+++R +L L+ V+F+VLDEADQML+ GFAEDVE I+ER
Sbjct: 122 SQRRSLERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMER 181
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP+ RQ+MMFSATMP W+++L +++++PL VDLVGD+D+KLA+GI LYS S Y K
Sbjct: 182 LPKQRQTMMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEASDYNKGP 241
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
++ +L+ + KGGK IVF +TKRD +A AM++S CE LHGDI Q QRERTLS FRDG
Sbjct: 242 LLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMSRSVPCEALHGDIPQFQRERTLSGFRDG 301
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
RF++L+ATDVAARGLD+PNVDL+IHYE+P SETFVHR+GRTGRAGKKG AIL++T Q
Sbjct: 302 RFSVLVATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAGKKGVAILMHTYAQG 361
Query: 453 RQVKSIERDVGCRFTQL--PRIAVEGGGDMYND 483
R +IE DVGCRF L P + + D D
Sbjct: 362 RVRDTIEHDVGCRFEALNVPNVDMSCAQDFSRD 394
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/389 (60%), Positives = 295/389 (75%), Gaps = 13/389 (3%)
Query: 89 AYDDS-------SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
A+DD+ SK+E LDISKL +V +L RRGI+ LFPIQ+AVL PA++GRD+I
Sbjct: 71 AFDDANDVPVAVSKNE-LDISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIA 129
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESA 197
RA+TGTGKTLAFGIPI+ + + NE+ GR P LVLAPTRELAKQVEKE ESA
Sbjct: 130 RAKTGTGKTLAFGIPIIKGLTE-NEQSNMMRRSGRLPKVLVLAPTRELAKQVEKEIKESA 188
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
P L+T+CVYGG Q AL GVD VVGTPGR+IDLI L L+E+Q++VLDEADQM
Sbjct: 189 PYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGGTLKLAEIQYLVLDEADQM 248
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
L+VGF E VE ILE +P RQ M+FSATMP W++ L+ K+L NPLT+DLVGD ++KLA+G
Sbjct: 249 LAVGFEESVEEILESIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEG 308
Query: 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDI 377
I LY+++ + K I+ LI+ +A GGK IVFT+TKRDAD ++ ++ S +PLHGDI
Sbjct: 309 IKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDI 368
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437
SQ QRE+TL+ FR GRF +L+ATDVA+RGLD+PNVDLIIHYELP+ ETFVHR+GRTGRA
Sbjct: 369 SQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRA 428
Query: 438 GKKGSAILIYTDQQARQVKSIERDVGCRF 466
GK+G+A+++YT Q R V S ER+VGC F
Sbjct: 429 GKEGTAVVMYTTSQKRTVISFEREVGCTF 457
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/377 (61%), Positives = 292/377 (77%), Gaps = 2/377 (0%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S D+ L I+ L +SQ+IV LA RGI+ LFPIQ+AV +PAM+G D+I RA+TGTGKTL
Sbjct: 14 ESKADDELAIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTL 73
Query: 152 AFGIPILDKIIKFNEKHGRGRN--PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
AFGIPI+D+I + K R P LVLAPTRELAKQVE EF ES L T+CVYGG
Sbjct: 74 AFGIPIMDRIYRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVCVYGGV 133
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
I Q R L GVD VGTPGR+IDL+++ L+LS+V+ +VLDEADQML+VGF EDVE I
Sbjct: 134 SIMSQKRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKI 193
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
+E+LP+ RQ+M+FSATMP W++ L+ K+L PLT+DLVG+SD+KLA+GI LY++ TS
Sbjct: 194 MEQLPEKRQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAA 253
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K I+ +IT + KGGK IVFTQTKRDA+ ++ AM ++ CE LHGDI+Q QRE+TL+AF
Sbjct: 254 KRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAF 313
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R+GRF IL+ATDVAARGLD+ +VDLIIHY+LP SETFVHR+GRTGRAGK GSA++ ++
Sbjct: 314 REGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSP 373
Query: 450 QQARQVKSIERDVGCRF 466
Q+ R +K ER VGC F
Sbjct: 374 QERRILKHFERQVGCSF 390
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/370 (61%), Positives = 288/370 (77%), Gaps = 2/370 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L I+ L +SQ+IV LA RGI+ LFPIQ+AV +PAM+G D+I RA+TGTGKTLAFGIPI+
Sbjct: 3 LAIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIM 62
Query: 159 DKIIKFNEKHGRGRN--PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
D+I + K R P LVLAPTRELAKQVE EF ES L T+CVYGG I Q R
Sbjct: 63 DRIYRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVCVYGGVSIMSQKR 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD VGTPGR+IDL+++ L+LS+V+ +VLDEADQML+VGF EDVE I+E+LP+
Sbjct: 123 LLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEK 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP W++ L+ K+L PLT+DLVG+SD+KLA+GI LY++ TS K I+
Sbjct: 183 RQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSD 242
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+IT + KGGK IVFTQTKRDA+ ++ AM ++ CE LHGDI+Q QRE+TL+AFR+GRF I
Sbjct: 243 VITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAFREGRFLI 302
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ +VDLIIHY+LP SETFVHR+GRTGRAGK GSA++ ++ Q+ R +K
Sbjct: 303 LVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQERRILK 362
Query: 457 SIERDVGCRF 466
ER VGC F
Sbjct: 363 HFERQVGCSF 372
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/344 (65%), Positives = 271/344 (78%), Gaps = 4/344 (1%)
Query: 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPT 182
+AVL PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPT
Sbjct: 37 RAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPT 96
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L
Sbjct: 97 RELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLK 156
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
L EV+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL
Sbjct: 157 LGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPL 216
Query: 303 TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
+DLVGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++
Sbjct: 217 NIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL 276
Query: 363 AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN 422
A++ S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDL+IHYELPN
Sbjct: 277 ALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN 336
Query: 423 TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
ETFVHR+GRTGRAGK+GSAIL++T Q R V+S+ERDVGC F
Sbjct: 337 DPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHF 380
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 276/370 (74%), Gaps = 3/370 (0%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D+ +S+ V AL +RG+ LFPIQ+AVL PAM G+D++GRARTGTGKTLAF +P+++
Sbjct: 26 DVDNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIE 85
Query: 160 KIIKFNEKHGRGRN--PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
K++ G P C+VLAPTRELAKQVE E +AP+LDT CVYGGTPI Q
Sbjct: 86 KLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEIFITAPTLDTACVYGGTPIGQQESK 145
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGR++DL+ R AL+LSE++FVVLDEADQML+VGF EDVE IL P R
Sbjct: 146 LRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGR 205
Query: 278 QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+ +FSATMP W++ +T K+LK + VDLVGD+ QK+AD I L + A S + SI+
Sbjct: 206 QTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMD 265
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
L+T +AK KCI FTQTKR AD L A+ K +CE LHGDI+Q+QRERTL FRD RF +
Sbjct: 266 LVTVYAKDKKCICFTQTKRAADELTAALGKRVSCEVLHGDIAQAQRERTLQRFRDNRFTV 325
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLD+ +VDL+IHYELPN E+FVHR GRTGRAG++G+AI +YTD+++ ++
Sbjct: 326 LIATDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAIAMYTDRESYMIR 385
Query: 457 SIERDVGCRF 466
I+++ GC F
Sbjct: 386 RIQKETGCDF 395
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/374 (55%), Positives = 281/374 (75%), Gaps = 1/374 (0%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K + + + +S AAL +RGI LFPIQ +VLEPA+QGRD++GRARTGTGKTL F
Sbjct: 128 NKRDPMHVDNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGF 187
Query: 154 GIPILDKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
+PI++ ++ + + R RNP C+VLAPTRELA QVEKE + PSL T+CVYGG IS
Sbjct: 188 SLPIIESLLSNPSNRTDRSRNPRCIVLAPTRELANQVEKEIQATVPSLRTLCVYGGVAIS 247
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q R L GVD VVGTPGR+IDLI+R +LNL ++++ VLDEADQML+VGF EDVE I+E
Sbjct: 248 NQERPLRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIMEE 307
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P+ RQ+ +FSATMP W+ +T KYL + +T+DLVG +QK+AD I + S A S + +
Sbjct: 308 IPEQRQTFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSRTT 367
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ L+T + KG K I FTQTKR+AD + A+ + E LHGDI+Q+QRERTL FRDG
Sbjct: 368 ILADLVTVYGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKRFRDG 427
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
RF++L+ATDVAARGLD+ +VDL++HYELP+ +E+FVHR GRTGRA KKG+AI +YT ++
Sbjct: 428 RFSVLVATDVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGRANKKGAAIAMYTPREK 487
Query: 453 RQVKSIERDVGCRF 466
+++SI R+ G +F
Sbjct: 488 SRIRSIVRETGVKF 501
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/365 (57%), Positives = 274/365 (75%), Gaps = 3/365 (0%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
+ + D++ +DE L ++ +S + VAAL +R I LFPIQK V PA GRD+IGRART
Sbjct: 36 EVLEVDETQQDESLLLANCGLSDETVAALGKRNIKALFPIQKHVFGPARAGRDLIGRART 95
Query: 146 GTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
G+GKTLAF +P+L+ ++K N + RGR+P C++LAPTRELAKQVEKEF ESAP L+
Sbjct: 96 GSGKTLAFALPVLENLLKENSQSPPQRGRSPRCIILAPTRELAKQVEKEFQESAPGLNVG 155
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
C YGG I Q+R L GVD VGTPGRVIDLI RN L+LS +FV+LDEAD MLS+GF+
Sbjct: 156 CFYGGVDIGGQIRQLRSGVDVAVGTPGRVIDLINRNCLDLSLTRFVILDEADMMLSMGFS 215
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYS 322
EDVE+IL+ +P RQ+M+FSATMP W++++T K+LKNP VDLVGD+ K+ D I +
Sbjct: 216 EDVEIILDSVPAERQTMLFSATMPSWVKNITRKHLKNPALVDLVGDAQSGKMPDAIKTMA 275
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQR 382
+ + + SI+ LIT HA GGKCIVFTQTKR+AD +A +++ + CE LHGDISQ+QR
Sbjct: 276 VHVTQEARRSILVDLITVHALGGKCIVFTQTKREADEVAASLSLVHPCEALHGDISQAQR 335
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
E+ L FR+G+F L+ATDVAARGLD+P+VDL++HY+LP +E F+HR+GRTGRAGK GS
Sbjct: 336 EQVLKNFRNGKFTALVATDVAARGLDIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKTGS 395
Query: 443 AILIY 447
I +
Sbjct: 396 TIAVV 400
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 272/369 (73%), Gaps = 1/369 (0%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I IS AAL +RGI LFPIQ AVL PA++GRD++GRARTGTGKTL F +PI++
Sbjct: 146 IDNFPISVLTKAALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPIIES 205
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ N R R P C+VLAPTRELA QVE E + PS+ T+CVYGG I++Q RAL
Sbjct: 206 LLS-NPSDARNRRPRCIVLAPTRELANQVEAEIQLTVPSMRTVCVYGGVAITNQERALRN 264
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLI+R +L L ++++ VLDEADQML+VGF EDVE I++ +P+ RQ+
Sbjct: 265 GVDFVVGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQEIPEERQTF 324
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP W++ LT KYLK + +DLVGDS QK+AD I + S A S + I+ L+T
Sbjct: 325 LFSATMPSWVKQLTRKYLKEHVNIDLVGDSKQKVADTIDILSCACSHQSRTMILADLVTV 384
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ KG K I FTQTKR+AD + A+ + E LHGDI+Q+QRERTL FRD RF++L+AT
Sbjct: 385 YGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKRFRDNRFSVLVAT 444
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+ +VDL++H+ELPN +E+FVHR GRTGRA K+G+AI ++T ++ ++++I R
Sbjct: 445 DVAARGLDITDVDLVVHFELPNDTESFVHRCGRTGRANKRGTAIAMFTPRENYRLRTIVR 504
Query: 461 DVGCRFTQL 469
+ G F +
Sbjct: 505 ETGVTFKSI 513
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/384 (52%), Positives = 273/384 (71%), Gaps = 15/384 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ ++ +AAL ++GI LFPIQ A LEPA GRD++ RA+TGTGKTLAF +PI++K
Sbjct: 222 INNFNLHPITIAALKKKGIETLFPIQVAALEPAQSGRDVVARAKTGTGKTLAFSLPIVEK 281
Query: 161 IIKFNEKHG---------------RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
++ +E+ R + P C+VLAPTRELA+QVE+E + APS +T+ V
Sbjct: 282 FLREDEEENNRGDEDGEGTRRRGSRDKRPRCIVLAPTRELAQQVEREIYSLAPSFETLTV 341
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG PI Q L GVD VVGTPGRV+DL+ R L+LS VQ VVLDEADQML+VGF ED
Sbjct: 342 YGGAPIGPQESKLRRGVDFVVGTPGRVMDLLNRGTLDLSRVQHVVLDEADQMLAVGFEED 401
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE ILE +P+NRQ+ +FSATMP W++ L K+L + + +DLVG+ K+ I L S +
Sbjct: 402 VETILEDVPKNRQTFLFSATMPHWVKKLQQKFLVDQVNIDLVGEDTGKINKDIDLMSCSV 461
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ K +++ L+T HAKG K IVFTQTKRDAD + ++ K + E LHGDI+Q+QRERT
Sbjct: 462 AFPSKCAVLMDLVTVHAKGNKTIVFTQTKRDADEVTASLGKRVSTEVLHGDIAQAQRERT 521
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L FR +F++L+ATDVAARGLDV NVDL++HYELPN +E+FVHR GRTGRAGKKG+AI
Sbjct: 522 LQRFRQDKFSVLVATDVAARGLDVDNVDLVVHYELPNETESFVHRCGRTGRAGKKGTAIA 581
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
++TD++ +++ I+R G ++
Sbjct: 582 LHTDREFYRLRDIKRFTGADIREI 605
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 242/306 (79%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++ LIT +AKGGK IV
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIV 195
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+
Sbjct: 196 FTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255
Query: 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R V+S+ERDVGCRF +
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFI 315
Query: 470 PRIAVE 475
A+E
Sbjct: 316 SPPAIE 321
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 242/306 (79%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++ LIT +AKGGK IV
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIV 195
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+
Sbjct: 196 FTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255
Query: 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R V+S+ERDVGCRF +
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFI 315
Query: 470 PRIAVE 475
A+E
Sbjct: 316 SPPAIE 321
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 240/306 (78%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSMLFSATMPSW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++ LIT +AKGGK IV
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIV 195
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+
Sbjct: 196 FTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255
Query: 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T Q R VKS+ERDVGC F +
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEFI 315
Query: 470 PRIAVE 475
++E
Sbjct: 316 SPPSIE 321
>gi|255559126|ref|XP_002520585.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223540245|gb|EEF41818.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 323
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/260 (71%), Positives = 217/260 (83%), Gaps = 13/260 (5%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDD------------SSKDEGLDISKLDIS 107
R H S PLDFK+S+ Q +AVDDY Y++ +S +EGL+I KL I+
Sbjct: 47 RGIHVKSGPLDFKASLMSQAEFAAVDDY-GYEEEKGGFGKGNNDINSDEEGLEIGKLGIA 105
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q+IV+ALARRGI+KLFPIQKAVLEPAMQGRD+ GRARTGTGKTLAFGIPILDKII+FN K
Sbjct: 106 QEIVSALARRGITKLFPIQKAVLEPAMQGRDLFGRARTGTGKTLAFGIPILDKIIQFNAK 165
Query: 168 HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
HGRGRNPL LV+APTRELA+QVEKEFHESAPSLDTIC+YGGTPIS QM+ LDYGVD VVG
Sbjct: 166 HGRGRNPLALVMAPTRELARQVEKEFHESAPSLDTICLYGGTPISRQMKELDYGVDVVVG 225
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+IDL+KR +LNLSE+QFVVLDEADQML VGF +D+E I +RLP+NR SM+FSATMP
Sbjct: 226 TPGRIIDLMKRGSLNLSEIQFVVLDEADQMLGVGFVDDIETIFQRLPKNRHSMLFSATMP 285
Query: 288 PWIRSLTNKYLKNPLTVDLV 307
WI++L YLK+PLT+DLV
Sbjct: 286 SWIKNLVRNYLKDPLTIDLV 305
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/384 (51%), Positives = 269/384 (70%), Gaps = 4/384 (1%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D A + + D L + +S+ V AL RGI+ LFPIQK V EPAM+G D+I RA+T
Sbjct: 138 DDEAEEAAVVDPSLLLVNCGLSEGSVRALEERGITSLFPIQKTVFEPAMRGADLIARAKT 197
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAF IPI++KI+ R P CLVLAPTRELAKQVE+E +AP L C
Sbjct: 198 GSGKTLAFAIPIIEKIMAGPRNL---RKPQCLVLAPTRELAKQVEREIAATAPGLGCGCY 254
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG PI Q++ L GVD VVGTPGR+IDLI ++AL+LS V+FVVLDEADQML+VGF +D
Sbjct: 255 YGGNPIGPQLKELRRGVDIVVGTPGRIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKD 314
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE ILE +PQ RQ+M+FSAT+P W++ L +YL NP +DLVG+ + D S+ ++A
Sbjct: 315 VETILENVPQERQTMLFSATLPRWVKKLVKQYLNNPENIDLVGEGNTG-QDPDSITALAV 373
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ S++ L+T + +GGK IVFTQTKR+AD +A ++ C LHGD+SQ +RE+
Sbjct: 374 PADARRSVLVDLLTVYGEGGKAIVFTQTKREADEVAASVGGHLPCGALHGDMSQREREKV 433
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L++FR + +L+ATDVAARGLD+P+VD+++HYELP E+F+HR+GRTGRAGK G+AI
Sbjct: 434 LASFRANKLMVLVATDVAARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIA 493
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
++ ++ K I R+ + +L
Sbjct: 494 MFQPKEIGYFKRILRETEVQGVKL 517
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/356 (51%), Positives = 255/356 (71%), Gaps = 8/356 (2%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--R 170
ALA RGI LFP+Q V EP M GRD++ RA+TG+GKTLAF +P+++ +++ N K +
Sbjct: 3 ALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPRK 62
Query: 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
GR P CLVLAPTRELA QV +EF P+L YGG IS Q+R+L+ GVD VVGTPG
Sbjct: 63 GRAPRCLVLAPTRELANQVSREFESVCPNLKVDSFYGGVSISPQIRSLENGVDVVVGTPG 122
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPP 288
R+IDL++R L L +++ VLDEADQML +GF +D+E IL +P+ RQ+++FSAT+P
Sbjct: 123 RIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLLFSATLPK 182
Query: 289 WIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLITEH---AKG 344
W++S+ +Y NPLT+DLVG+ + KLAD I L +K S + L+ + A G
Sbjct: 183 WVKSVAKRYQNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLLAMYGNTAGG 242
Query: 345 GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
GK I+F TK AD + A+ + +C+ LHGDISQ+QRE+ L+ FRDG++N L+ATDVAA
Sbjct: 243 GKAIIFVNTKAKADEVNMAVNEFASCDALHGDISQAQREKALALFRDGKYNCLVATDVAA 302
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
RGLD+P+VDL+ H++LP +E F+HR+GRTGRAGK G+A++++T+++AR + I R
Sbjct: 303 RGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAGKTGTAVVLFTEREARSLALILR 358
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/367 (48%), Positives = 260/367 (70%), Gaps = 14/367 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ L +S + + ALA RGI LFP+Q VLEP GRD++ RA+TG+GKTLAF +P+++
Sbjct: 16 IANLGLSPETMDALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVEN 75
Query: 161 IIKFN------EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
+++ + + +GR+P C+VLAPTRELA QV +EF P+L YGG IS Q
Sbjct: 76 LLEVSGLRRPRTRPRKGRSPRCVVLAPTRELANQVSREFESVCPALKVDSFYGGVSISAQ 135
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
MR+L+ GVD VVGTPGRVIDL++R +L L V++ +LDEAD ML +GF +D+E IL +P
Sbjct: 136 MRSLERGVDVVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGAMP 195
Query: 275 ----QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYE 329
RQ+++FSAT+P W++S+ +Y +NPLT+DLVG+ + +LAD I L +
Sbjct: 196 TAAANERQTLLFSATLPKWVKSVAKRYQQNPLTIDLVGEENTGRLADTIRLLVQQVEGAQ 255
Query: 330 KPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTL 386
K S + +++ + A GGK I+F TK AD + A+ + C+ LHGDISQ+QRE+ L
Sbjct: 256 KMSALQGVLSMYGNTAGGGKAIIFVNTKAKADEVNLAVNEFAPCDALHGDISQAQREKAL 315
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
S FR+G++ L+ATDVAARGLD+PNVDL++HY++P +E F+HR+GRTGRAGK G+A+++
Sbjct: 316 SLFREGKYAALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAGKTGTAVVL 375
Query: 447 YTDQQAR 453
+TD+++R
Sbjct: 376 FTDRESR 382
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/364 (50%), Positives = 250/364 (68%), Gaps = 6/364 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + A LA RGI + PIQ L MQGRD+IGRARTGTGKTLAF IP++DK+
Sbjct: 7 IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVIDKLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E RGR P L+LAPTRELAKQV +EF +SAP L T+ VYGG Q +AL GVD +
Sbjct: 67 E---RGRLPRALILAPTRELAKQVAEEFKKSAPELLTLTVYGGAAYGPQEKALYGGVDVI 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGRVID I+R L L VQF +LDEAD+MLSVGFA+ +E IL P+ RQ+M+FSAT
Sbjct: 124 VGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+P + + NKYLK+PL VDLVG+S + A + + + ++ +T +
Sbjct: 184 LPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRT-RTRVLADFLTIY-NPE 241
Query: 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
+ IVFT+TKR+ D LA + + E LHGD++QSQRER L +FR GR +L+ATDVAA
Sbjct: 242 RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLVATDVAA 301
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464
RGLD+P +DL++ Y LP E++VHR+GRTGRAG+ G+AI++Y +++ R+++++E G
Sbjct: 302 RGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGRELRNLEYQTGV 361
Query: 465 RFTQ 468
+F +
Sbjct: 362 KFEE 365
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/366 (50%), Positives = 252/366 (68%), Gaps = 6/366 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I ++ A LA RGI++ PIQ L +QGRD+IGRARTGTGKTLAF +PI+ +
Sbjct: 7 IVPELAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQNLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELAKQV EF +S +L T+ VYGG + Q AL GVD V
Sbjct: 67 E---RSRLPRAIVVAPTRELAKQVADEFSKSGANLTTVTVYGGASYAPQENALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+LS VQ+ VLDEAD+MLSVGFA+ +E ILE+ P+ RQ+M+FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLSAVQYAVLDEADEMLSVGFADAIETILEKTPEGRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+ I L+ KYL++PLTVD+VG+ + A + + + ++ L+T +
Sbjct: 184 LNGDINRLSRKYLRDPLTVDMVGEGKSQAAQTVEHLKVRVG-RSRTRVLADLLTVY-NPE 241
Query: 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K IVFT+TKR+AD LA+ + + E LHGD++Q+QRER L AFR GR +L+ATDVAA
Sbjct: 242 KAIVFTRTKREADELANELIHRGIESEALHGDLAQTQRERALGAFRSGRVGVLVATDVAA 301
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464
RGLD+P VDL++ Y LP E++VHR+GRTGRAG+ G+AI++Y D+ R++ +ER G
Sbjct: 302 RGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRDGREMSGLERITGV 361
Query: 465 RFTQLP 470
RFT+ P
Sbjct: 362 RFTERP 367
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 362 bits (930), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 250/366 (68%), Gaps = 6/366 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ ++ A LA RGI++ PIQ L + GRDMIGRARTGTGKTLAF +PI+ K+
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELAKQV +EF +S L T+ VYGG + Q AL GVD V
Sbjct: 67 E---RARPPRAIVVAPTRELAKQVAEEFSKSGVGLTTVTVYGGASYAPQENALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+LS V+F VLDEAD+MLSVGFA+ +E IL++ P +RQ+M+FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+ I L+ YL+ P+ VD+VG+ + A + + + ++ L+T +
Sbjct: 184 LNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVG-RSRTRVLADLLTIY-NPE 241
Query: 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K IVFT+TKR+AD LA+ + + E LHGD++QSQRER L AFR GR +L+ATDVAA
Sbjct: 242 KAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAA 301
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464
RGLD+P VDL++ Y LP E++VHR+GRTGRAG+ G+AI++Y D++ R+V +ER G
Sbjct: 302 RGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLERITGV 361
Query: 465 RFTQLP 470
RF + P
Sbjct: 362 RFIERP 367
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 249/366 (68%), Gaps = 6/366 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + A LA RGI++ PIQ L +QGRD+IGRARTGTGKTLAF +PI+ +
Sbjct: 7 IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQGLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELA+QV EF ++ L + VYGG Q AL GVD V
Sbjct: 67 E---RSRLPRAIVVAPTRELARQVAAEFEQTGRELTVLTVYGGAAYGPQETALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+L EV++ VLDEAD+MLSVGFA+ +E IL+ P+ RQ+++FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGRQTLLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+ P IR L+NKYL +PL VD+VG+ + A + + + ++ L+T +
Sbjct: 184 LTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVG-RSRTRVLADLLTVY-NPE 241
Query: 346 KCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K IVFT+TKR+ D LA + + + E LHGD++Q+QRER L +FR GR +IL+ATDVAA
Sbjct: 242 KAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSILVATDVAA 301
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464
RGLD+P VDL++ Y LP E++VHR+GRTGRAG+ G+AI++Y D++ R + +ER G
Sbjct: 302 RGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDINGLERVTGV 361
Query: 465 RFTQLP 470
RFT+ P
Sbjct: 362 RFTERP 367
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 251/368 (68%), Gaps = 5/368 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ ++ A LA RGI++ PIQ L + G+D+IGRARTGTGKTLAF +PI+ + +
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAPD 66
Query: 166 EK--HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ RGR P +V+APTRELAKQV +EF +S P L T+ VYGG Q AL GVD
Sbjct: 67 GRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQLSTVTVYGGAAYGPQENALRRGVD 126
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR+ID ++R L+LS +Q+ VLDEAD+MLSVGFA+ +E IL++ P RQ+M+FS
Sbjct: 127 VVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFS 186
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT+ I L KYL+ P+ VDLVG+ + A + + + ++ L+T +
Sbjct: 187 ATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRT-RTRVLADLLTVY-N 244
Query: 344 GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
K IVFT+TKR+AD LA+ + + E LHGD++QSQRER L AFR GR +L+ATDV
Sbjct: 245 PEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDV 304
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLD+P VDL++ Y LP E++VHR+GRTGRAG+ G+AI++Y D++ R+++++E
Sbjct: 305 AARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENRELRNLEYRT 364
Query: 463 GCRFTQLP 470
G +F + P
Sbjct: 365 GVQFKERP 372
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/433 (44%), Positives = 276/433 (63%), Gaps = 24/433 (5%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + ALA RGIS PIQ L + GRD+IGRARTGTGKTLAF +PI ++ + +
Sbjct: 7 IAPHLAEALAARGISAPSPIQIESLPHTLAGRDLIGRARTGTGKTLAFVLPITTRL-EAS 65
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
+ GRG P ++LAPTRELAKQV E +SA L T+ VYGG Q +AL GVD V
Sbjct: 66 RQSGRG--PRAIILAPTRELAKQVAAEAEQSARHLTTVTVYGGAAYGPQEKALMRGVDIV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L L +VQ VLDEAD+MLSVGFA+ +E IL P++RQ+M+FSAT
Sbjct: 124 VGTPGRIIDHLERGNLRLDDVQIAVLDEADEMLSVGFADAIEQILRSAPKDRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+P + L +Y ++P+ VDLVG+ + + ++ +I + ++ L+T +
Sbjct: 184 LPSGVERLARQYQRDPVLVDLVGERASQASQTVTHLAIKVGRV-RTRVLADLLTVY-NPE 241
Query: 346 KCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
+ IVFT+TKR+AD L+ + + E LHGD++QSQRER L AFR GR +L+ATDVAA
Sbjct: 242 RAIVFTRTKREADELSLELIHRGIEAEALHGDLAQSQRERALGAFRAGRVRVLVATDVAA 301
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464
RGLD+P VDL++ Y +PN +E +VHR+GRTGRAG++G+AI++Y D++ R++ ++ER G
Sbjct: 302 RGLDIPEVDLVVQYHMPNDTEAYVHRSGRTGRAGREGTAIVLYGDREGRELSNLERATGV 361
Query: 465 RFT--QLP----------RIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDS 512
RFT +P R A + + ND+G + + ++ +A+ G D +R
Sbjct: 362 RFTPRAVPTAKEVREASARTAADAVRHIENDLG--ASFKEEAEKLFAELGVDALAR---- 415
Query: 513 GFGRSGGYRSPGS 525
+ G +P +
Sbjct: 416 ALAKIAGVTAPAT 428
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/377 (46%), Positives = 252/377 (66%), Gaps = 17/377 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
DE D+ IS + LA+RGI+ LFP+Q + +GRD++ RARTGTGKTL F +
Sbjct: 46 DEPGDLRNFPISDQTLDCLAQRGITSLFPVQYSTFNEIFEGRDVLARARTGTGKTLGFSL 105
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
PIL E+ RG P C++L+PTRELA+QVE+E + T+CVYGG P Q
Sbjct: 106 PIL-------ERRSRGSAPACIILSPTRELAQQVEREVQ-----VKTLCVYGGVPYHKQE 153
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+ L GVD VVGTPGR+IDL+ AL+LSE++++VLDEAD+ML+ GFA+DVE ++ +PQ
Sbjct: 154 KELQMGVDIVVGTPGRLIDLMNNGALDLSEIRYLVLDEADEMLNRGFADDVETLMGGMPQ 213
Query: 276 ---NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
Q+++FSAT+P W+R L L NP VDLVG+S K+A+G+S ++A++ ++ +
Sbjct: 214 GADRPQTLLFSATVPDWVRKLARTSLVNPHEVDLVGESKLKVAEGVSHVAVASAARQRST 273
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFRD 391
++ LIT + K IVF TKRDAD L + E LHGDI Q+ RE+ L+ FR
Sbjct: 274 LLADLITIY-KTQHAIVFVNTKRDADDLVAELGLIIKGTEALHGDIPQNVREKILNGFRT 332
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
GR +LIATDVAARGLD+ ++DL++H+ +P E F+HR GRTGRAG+ G++++++ +
Sbjct: 333 GRIPVLIATDVAARGLDIDHIDLVVHFGVPKDLEMFIHRAGRTGRAGRTGTSLVLFDKAE 392
Query: 452 ARQVKSIERDVGCRFTQ 468
A Q+ IE+D G +F +
Sbjct: 393 AFQLTRIEKDAGIKFEK 409
>gi|414883512|tpg|DAA59526.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 329
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 173/266 (65%), Positives = 210/266 (78%), Gaps = 1/266 (0%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FH + PL F+S+ A + D+ ++GL+I++L S IV LA RGI
Sbjct: 52 RAFHCSTTPLGFRSTPASWAGPCPGEGEGEGVDTGAEKGLEIARLGTSPRIVEKLAARGI 111
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ +NEK G GRNPL ++L
Sbjct: 112 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNEKTGNGRNPLAIIL 171
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMRAL+YGVD VVGTPGRVIDL++R
Sbjct: 172 APTRELARQVEKEFRESAP-LDTLCVYGGVPINQQMRALNYGVDIVVGTPGRVIDLLRRG 230
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLS++QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++NKYLK
Sbjct: 231 VLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLK 290
Query: 300 NPLTVDLVGDSDQKLADGISLYSIAT 325
+P+ +DLV D L L S+A
Sbjct: 291 DPVIIDLVSDFFYYLRVIFVLLSLAC 316
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/382 (46%), Positives = 252/382 (65%), Gaps = 11/382 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + + +S+ + + L + I LFPIQ LEPAM+G D++GRARTG GKTLAF +P++
Sbjct: 104 LGLDRFKLSEQVKSMLRSQNIESLFPIQAMTLEPAMEGLDVVGRARTGCGKTLAFTVPVV 163
Query: 159 DKIIKFNEK-----HGRGRNPLCLVLAPTRELAKQVEKEFHES--APSLDTICVYGGTPI 211
++II + G GR P+C+VLAPTRELAKQV++ F + A +L T+CVYGGTP
Sbjct: 164 ERIIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGKAANLYTMCVYGGTPY 223
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q +AL GVD VVGTPGRV DL++R L LS ++F VLDE DQML++GF EDVE IL+
Sbjct: 224 DGQEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILK 283
Query: 272 RLPQNR---QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSM 327
+ NR Q+++FSAT+P W++ LT ++L+ +DLVGD + A + + S
Sbjct: 284 QGENNRDQIQTLLFSATLPKWVQGLTQRFLRPGHKFLDLVGDDRMQAAVTVKHLMLPCSY 343
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
++ ++ LIT + GG+ I+FT +K++A L+ + S + LHGD++QS RE+TL
Sbjct: 344 PQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLD 403
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR GRF ILIATDVAARGLDV ++L++ + P ET++HR+GRTGRAG G + +
Sbjct: 404 GFRKGRFAILIATDVAARGLDVTGIELVLMVDPPADWETYIHRSGRTGRAGSSGVCVTLV 463
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T + V IE+ G +F ++
Sbjct: 464 TKKMEYMVPIIEKRAGMKFERI 485
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/372 (44%), Positives = 251/372 (67%), Gaps = 2/372 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+++ ++ +S+ + A L GI+ LFP+Q + M G+D++ R+RTG+GKT+AF +P++
Sbjct: 1 MNLEEVPLSKKVKAKLKECGITSLFPVQVKTFQTLMDGKDVVVRSRTGSGKTIAFALPVI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+KI+ N+ GR P CLV+APTRELA Q+++EF P + + CVYGG I Q+ AL
Sbjct: 61 EKILA-NKTRKHGRLPSCLVIAPTRELAIQIDREFTRIQPEVASTCVYGGVSIGMQVSAL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+ID + L++S V+ +LDEAD+ML +GF +DVE I+E LP ++Q
Sbjct: 120 RKGVDVVVGTPGRLIDHLVNGTLDVSAVETFILDEADEMLKMGFQDDVERIIEYLPPSKQ 179
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ ++SATMP W++ L KY K+ + D+VG+ + + I +IA + I +++
Sbjct: 180 TNLWSATMPTWVKDLAQKYCKDVVFFDMVGNDSTRTSITIEHIAIACGYDSHANAISRVV 239
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
++ KGG+ +VF +TK + DRLA+ + +HGD+SQ QRERTL FR G+F IL+
Sbjct: 240 KKYGKGGRVLVFCRTKLEVDRLANHPSLKTTARVIHGDVSQLQRERTLQDFRSGKFLILV 299
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DVP V+L+I +P S TFVHR+GRTGRAG+KG +++ Y+ + R + I
Sbjct: 300 ATDVAARGIDVPEVELVIQTCVPEDSNTFVHRSGRTGRAGRKGVSVVFYSGGEERDLLEI 359
Query: 459 ERDVGCRFTQLP 470
E ++G +F LP
Sbjct: 360 EEELGIQF-HLP 370
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 161/366 (43%), Positives = 236/366 (64%), Gaps = 4/366 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I++ +S + + L + GI+ LFP+Q M+G D++GR++TG+GKTLAFG+PI++K
Sbjct: 83 ITEFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEK 142
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + G RNP L+L PTRELA QV E +P L T+ + GG P Q +
Sbjct: 143 LL---SRSGSRRNPGALILLPTRELATQVSSELSRLSPQLKTVTIVGGVPYHSQESRIRA 199
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR++DL ++ L+ +VQF VLDEAD ML GF E VE IL +P+ RQ +
Sbjct: 200 GVDIVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCV 259
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
M+SAT P W+ SLT KYLK+ +T+DLVG + + +S +I + + +++ +
Sbjct: 260 MWSATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVVALQRILEK 319
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+A G+ +VFT+TK +A+ +A+ + + N + LHGD+SQ R T+ FR G L T
Sbjct: 320 YASQGQSLVFTETKHEANEIANGL-EGCNVQALHGDLSQGVRASTMQNFRKGLVKTLACT 378
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
D+AARGLD+ NVDL++HY LPN E FVHR GRTGRAGK G++I+ + +Q+ R +K +E
Sbjct: 379 DIAARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLEN 438
Query: 461 DVGCRF 466
+F
Sbjct: 439 RFKIQF 444
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 181/401 (45%), Positives = 253/401 (63%), Gaps = 14/401 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + + +S+ + + L + I LFPIQ LEP + G D++GRARTG GKTLAF +PI+
Sbjct: 102 LGLDRFPLSEQVKSMLRSQNIESLFPIQAMTLEPGLAGVDVVGRARTGCGKTLAFVLPIV 161
Query: 159 DKIIKFNEK---HGR--GRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPI 211
++I+ K GR GR P+C+VLAPTRELAKQV++ F A +L T+CVYGGTP
Sbjct: 162 ERILAEQRKGVAAGRVAGRLPICIVLAPTRELAKQVQEVFANVGKAANLYTLCVYGGTPY 221
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL- 270
Q AL GVD VVGTPGR+ DL++R L LS ++F VLDE DQML++GF EDVE IL
Sbjct: 222 DGQETALSKGVDVVVGTPGRIKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILK 281
Query: 271 --ERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSM 327
E+ P + Q+++FSAT+P W++ LT ++L+ +DLVGD + A + + S
Sbjct: 282 AGEQQPDSIQTLLFSATLPKWVKGLTQRFLRPGHRFMDLVGDDKMQAAVTVRHLMLPCSY 341
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
++ ++ LIT + GG+ I+FT +K++A L+ + S + LHGD++QS RE+TL
Sbjct: 342 PQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLD 401
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR GRF +LIATDVAARGLDV ++L++ + P ET++HR+GRTGRAG G+ I +
Sbjct: 402 GFRKGRFPVLIATDVAARGLDVSGIELVLMVDPPADWETYIHRSGRTGRAGSSGTCITLV 461
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRS 488
T + V IE G +F RI DM RS
Sbjct: 462 TKKMEYMVAIIEGRAGMKFE---RIGAPQPADMARIAAERS 499
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/410 (42%), Positives = 268/410 (65%), Gaps = 19/410 (4%)
Query: 84 VDDY------VAYDDSSKDEG--LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ 135
VDD+ + +D ++ DEG + I + +S +V +LA I+ PIQ+ +P +
Sbjct: 157 VDDFKSFGEEMTFDTTAHDEGGEMSIDEKRVSPGVVESLAGANITHFTPIQRETFDPLFE 216
Query: 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEK 191
GRDMIGR+RTGTGKTLAFG+PIL+ + K E K+ RGR+P ++LAPTRELAKQ ++
Sbjct: 217 GRDMIGRSRTGTGKTLAFGLPILEAVAKNMEAAGTKNARGRSPSVIILAPTRELAKQCDE 276
Query: 192 EFHESAPSLDTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+ L +YGG P Q+R L+ G D +VGTPGR++D + R L+L++++ +
Sbjct: 277 QLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLDRGTLSLNDIKHI 336
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNR-QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+LDEAD+ML +GFAED+E I + Q ++FSAT P W++ + KYLKNP+ VD VG
Sbjct: 337 ILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQVIARKYLKNPINVDAVG 396
Query: 309 DSDQKLADGISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA- 365
+ + A I ++ S + +++ +I H+ GG+ +VFTQTK +AD L+ +
Sbjct: 397 GGN-RAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCGGRVMVFTQTKSEADELSTSSPY 455
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425
+ N LHGDI+Q QRE TL FRDG F +LIATDVAARG+D+P VDL+I Y + S+
Sbjct: 456 AAENTRVLHGDITQRQRELTLRQFRDGFFKVLIATDVAARGIDIPEVDLVIQYRPCDDSD 515
Query: 426 TFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
++VHR+GRTGRAG++G++++IY++ + +++ +E D+ +F ++ ++E
Sbjct: 516 SYVHRSGRTGRAGREGTSVIIYSEPEWFKLRRLENDINIKFDKVGMPSIE 565
>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
Length = 402
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 199/253 (78%)
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L LSE+Q++VLDEADQML+VGF EDVE ILE +
Sbjct: 2 QKNALSRGVDVVVGTPGRLIDLINGRSLQLSEIQYLVLDEADQMLAVGFEEDVESILETI 61
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQ M+FSATMP W++ L+ K+L NP T+DLVGD ++KLA+GI LY++ + K I
Sbjct: 62 PSQRQIMLFSATMPGWVKKLSRKHLNNPKTIDLVGDREEKLAEGIKLYAVPATSISKRRI 121
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LI+ + KGGK IVFT+TKRDAD +++++ S + LHGDISQ QRERTL FR GR
Sbjct: 122 LSGLISAYGKGGKTIVFTRTKRDADEISYSLTSSIASKALHGDISQYQRERTLDGFRQGR 181
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVA+RGLD+PNVDLIIHYELP+ ETFVHR+GRTGRAGK+G+A++++T Q R
Sbjct: 182 FTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMFTASQKR 241
Query: 454 QVKSIERDVGCRF 466
V S+ERDVG RF
Sbjct: 242 TVISLERDVGSRF 254
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 173/385 (44%), Positives = 242/385 (62%), Gaps = 16/385 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + DI + V L RGI LFPIQ + + G+D++GRARTG GKTLAF +P
Sbjct: 98 ENPPLESFDICAETVKNLKARGIHTLFPIQAMTFDKILAGKDLMGRARTGMGKTLAFALP 157
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++ ++K RGR P + +APTRELAKQV EF +S PSL T+C+YGG Q
Sbjct: 158 VIELLLKDKRPRSRGRAPRVVCMAPTRELAKQVATEFEQSGPSLSTVCIYGGASYQSQNN 217
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A GVD +VGT GRVID I R L L +F++LDEAD ML +GF EDV+ + + Q
Sbjct: 218 AFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEQT 277
Query: 277 -------RQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMY 328
RQ+++FSAT+P W+ + +KY+ K+ V+LV DSD + + + +I
Sbjct: 278 KNESSGKRQTLLFSATIPKWVTDVADKYMAKDREYVNLVKDSDDQASTDVQHIAIPCHWQ 337
Query: 329 EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
+P+++ L+ +AK + I+F +TK+D + LA +C+ LHGDI+Q QRE T+
Sbjct: 338 GRPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMK 397
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTS------ETFVHRTGRTGRAGKKG 441
AFR+GR +LIATDVAARGLD+ NVDL+I+ E P +T+VHR+GRTGRAGKKG
Sbjct: 398 AFREGRLRLLIATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKG 456
Query: 442 SAILIYTDQQARQVKSIERDVGCRF 466
I +YT++Q Q+ IER +G +F
Sbjct: 457 ICITLYTNRQRDQLTQIERKIGNKF 481
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 165/374 (44%), Positives = 243/374 (64%), Gaps = 10/374 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +S +A+L R I+ LFPIQ + G D+I +ARTGTGKTLAF +P+++K
Sbjct: 120 FSNFRLSPQTIASLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ N + GR P LV+APTRELAKQV ++F S P L T+CVYGGT Q A+
Sbjct: 180 LK--NTEFKAGRPPQVLVMAPTRELAKQVSEDFQASNPRLSTLCVYGGTAYWPQESAIRR 237
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL------ERLP 274
GVD +VGTPGR++D +++N LNLS+++ V+LDE D+ML +GFA+ VE IL +
Sbjct: 238 GVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPG 297
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT+P W+ KY+K+ + VDL+G K A + +I ++ +
Sbjct: 298 ENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQRAAT 357
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++ ++ K G+C++FT+TK+DA+ + + + + + LHGDI+Q+QRE TL FRDG
Sbjct: 358 ISDVVQVYSGKHGRCMIFTETKKDANEMGLSSSIRQDVQVLHGDIAQNQREITLKGFRDG 417
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F L+ATDVAARGLD+P VDLI+ E P +E ++HR+GRTGRAG+ G ++ Y +
Sbjct: 418 KFRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGRTGRAGRTGVSVCFYKPNEE 477
Query: 453 RQVKSIERDVGCRF 466
+K IER G +F
Sbjct: 478 HVLKLIERRAGIKF 491
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 169/373 (45%), Positives = 241/373 (64%), Gaps = 11/373 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L + ++ AL RG + L P+Q A L A++GRD+I +ARTGTGKTLAF +PI
Sbjct: 1 MQFNELSLKPEVQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ +GR P LVLAPTRELA QV E +AP L+ + VYGGT Q +AL
Sbjct: 61 ERL---EPARAKGRAPRALVLAPTRELALQVAGELDWAAPHLEVLTVYGGTGYGQQAQAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D ++R L+L+ V+ VVLDEAD+MLS+GF EDVE +L RQ
Sbjct: 118 RRGCDVVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W R L ++LK+P +LV D + +I + +++ ++
Sbjct: 178 TLVFSATMPSWARRLAERHLKDPFVANLVKDEAVTYRE----LAIEAPTATRIAVLSDVL 233
Query: 339 TEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
HA G G+ IVFT+TK + D LA A+A + + E +HGD+SQ+ RER ++ FR G +
Sbjct: 234 --HAYGAGRAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRV 291
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLDVP V+L++HY LP E + HR+GRTGRAG+ G+ +L+Y ++ R V
Sbjct: 292 LVATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVA 351
Query: 457 SIERDVGCRFTQL 469
+ER + RF +L
Sbjct: 352 DLERALRRRFERL 364
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 174/376 (46%), Positives = 246/376 (65%), Gaps = 13/376 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS V L RG LF IQ + G+D+IGRARTG+GKTL+F +P+++KI
Sbjct: 119 SDFRISPTTVKLLQDRGFKCLFAIQAQTYDHIYDGKDIIGRARTGSGKTLSFVLPVVEKI 178
Query: 162 IKFNEKHGR-----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
F + G+ GR P + L+PTRELA+Q+ KEF APSL +CVYGG P + Q
Sbjct: 179 --FIDMAGKPRSTYGRPPKVVCLSPTRELARQIAKEFDLVAPSLKAVCVYGGAPYTPQEN 236
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL GVD V+GTPGRVID++ RN L L++V++V+LDEAD+ML++GFA+ V+ IL P+
Sbjct: 237 ALKRGVDIVIGTPGRVIDMLDRNCLKLTDVKYVILDEADEMLNIGFADAVDKILASAPKP 296
Query: 276 -NRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
RQ+++FSAT+PPW++ + K+++ N +TVDLVG+S K A + +I + S
Sbjct: 297 DERQTLLFSATIPPWVQGIAQKHMRPSNLITVDLVGNSKLKAALTVRHLAICCPPPVRIS 356
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ ++ +A G+ IVF TK + + LA + S C+ LHGDI+Q QRE TL FR+G
Sbjct: 357 TMADVVKVYAGTGRTIVFANTKAEVNELAMKSSISNVCQVLHGDIAQKQREITLQGFREG 416
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
RF+ L+ATDVAARGLD+ +VDL+I + P ET++HR+GRTGRAGK G + +T +
Sbjct: 417 RFSCLVATDVAARGLDIDDVDLVIQTQAPKDKETYIHRSGRTGRAGKSGICVTFFTRRDV 476
Query: 453 R--QVKSIERDVGCRF 466
R +K +E VG +F
Sbjct: 477 RDGNLKWLESAVGAKF 492
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 243/393 (61%), Gaps = 16/393 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D+ ++++ S I + L +G+ LFPIQ +P G D+I +ARTGTGKT
Sbjct: 108 DEETQEKIGAFSNFGIRPKTIEKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKT 167
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
L+F +P+++K +F +K GR P+ L LAPTRELAKQ+ + F P L T C+YGGT
Sbjct: 168 LSFVLPLVEKWQQFPQKSGR--QPIILALAPTRELAKQISEYFEAIGPHLSTTCIYGGTS 225
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q A+ G+D VVGTPGR++D I++N L+LS+++ VVLDE D+ML +GFAE VE IL
Sbjct: 226 YWPQESAIRRGLDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEIL 285
Query: 271 ------------ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADG 317
E P N Q+++FSAT+PPW+ KY++ L VDLVG K A
Sbjct: 286 GAAYKTGQPGDGEEAPNNPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATT 345
Query: 318 ISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGD 376
+ +I S +++P +I +I + G+C+VF +TKRDA+ LA + + +HGD
Sbjct: 346 VQHLAINCSYFDRPQVISDVIKVYGGLDGRCMVFCETKRDANELAMSSDVKQETQVMHGD 405
Query: 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGR 436
I Q+QRE TL FR+G+F L+ TDVAARGLD+P VDL+I P ++++HR+GRTGR
Sbjct: 406 IPQTQREVTLKGFREGKFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTGR 465
Query: 437 AGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
AG+ G + Y Q+ R ++ +E G +F ++
Sbjct: 466 AGRNGVCVCFYKRQEERDLQKVEYKAGIKFKRV 498
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 171/380 (45%), Positives = 242/380 (63%), Gaps = 15/380 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + DIS+ L RGI+ LFPIQ E +G+D+IGRARTG GKTLAF +P+++K
Sbjct: 149 VDEFDISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAVPVIEK 208
Query: 161 IIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + GR P LV+APTRELAKQV +F +APSL T C+YGG P Q AL
Sbjct: 209 LLMAGAGSLKPGRKPRVLVMAPTRELAKQVAADFELTAPSLKTTCIYGGAPYRPQEDALR 268
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----PQ 275
+GVD VVGTPGR++D + R L LS+ +F++LDEADQML +GF E++E + E Q
Sbjct: 269 WGVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQ 328
Query: 276 NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ ++FSATMPPW+ + +Y+K + + +DLV + K + + I + S I
Sbjct: 329 GRQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIPCHWTSRSSTI 388
Query: 335 GQLITEHAKGG--KCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+++ + GG + IVF TKRD + L +Y+C+ LHGDI+Q+ RE TL+ F+ G
Sbjct: 389 NDIVSVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYDCQALHGDITQANRESTLAGFKKG 448
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILI 446
F +L+ATDVAARGLD+ VDL+++ E P +E++VHR+GRTGRAG+KG I +
Sbjct: 449 SFKVLVATDVAARGLDM-IVDLVLNAEPPTHQSGRVDTESYVHRSGRTGRAGRKGMCITL 507
Query: 447 YTDQQARQVKSIERDVGCRF 466
YT +Q + IER +G F
Sbjct: 508 YTPRQRGGLGEIERHIGNDF 527
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 170/391 (43%), Positives = 248/391 (63%), Gaps = 9/391 (2%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
D V+ + ++ + + D+ VAAL RGI K P+Q + + GRD+IG++R
Sbjct: 242 DQMVSLVEVGEEGACPVEEKDVDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSR 301
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHG-----RGRNPLCLVLAPTRELAKQVEKEFHE--SA 197
TGTGKT+AFG+P++ + +F E H RGR+P LV+ PTRELA+QV E S
Sbjct: 302 TGTGKTIAFGLPVIQHLGRFAEDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGST 361
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
L +GG QMR+L G+D +V TPGR++D ++R AL+LS+V+ VLDEAD+M
Sbjct: 362 FGLKADVFHGGAAYGPQMRSLSDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEM 421
Query: 258 LSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
L++GFA+D+E I + + Q ++FSAT+P W+R++ NKY NPLTVD VG KLA
Sbjct: 422 LNMGFADDIETIFSYVDVKECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLAT 481
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHG 375
+ SI S + S++ +IT + KG IVFT +K + D LA K+ + LHG
Sbjct: 482 TVKHLSIEVSSRHRSSMLEDIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHG 541
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
DISQ QR++T+ AFR F +L+ATDVAARG+DV ++DL++ Y P +++VHR+GRTG
Sbjct: 542 DISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTG 601
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
RAG+ G A+ +Y + + R ++ IE+ VG F
Sbjct: 602 RAGRPGVAVTLYAENEIRDIRKIEQGVGQGF 632
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 262/411 (63%), Gaps = 28/411 (6%)
Query: 84 VDDYVAYDDSSKDEGLDI------SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
+DDY + S+K E DI S ++S + +L RGI +LFPIQ A +P ++G
Sbjct: 123 IDDYKS---STKKEESDIPVNLRLSSHNLSLSTIESLKARGIVQLFPIQAASFDPIIKGM 179
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKH-----GRGRNPLCLVLAPTRELAKQVEKE 192
D++GRARTGTGKTLAF +P+++ + + E + RGR P L++APTRELA QV +E
Sbjct: 180 DLLGRARTGTGKTLAFSLPMIEVLKRERESNRHLFSQRGRAPRVLIMAPTRELAMQVHRE 239
Query: 193 FHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
F S+ L + C YGG+P Q A+ G+D +VGTPGR+ID I+R L L++++F+ L
Sbjct: 240 FDSISSGELKSTCAYGGSPYDSQCNAMRDGIDVIVGTPGRLIDHIERGTLKLNQLRFICL 299
Query: 252 DEADQMLSVGFAEDVEVILERLPQNR---------QSMMFSATMPPWIRSLTNKYLK-NP 301
DEADQML +GFAE +E IL+++ + + Q ++FSATMP WI+ +KY+K N
Sbjct: 300 DEADQMLDIGFAESMEKILQQVQEQKSKLTDAPDHQVLLFSATMPVWIKQAVSKYMKPNK 359
Query: 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG--KCIVFTQTKRDADR 359
+T+DL+G QK + + Y+IA+ + +++G ++ + +GG + I+F +TK +A+
Sbjct: 360 VTLDLIGTDKQKTSATVKHYAIASHWQNRSALLGDIVAIYGRGGAGRTIIFVETKGEANE 419
Query: 360 LA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
LA + + + LHGDI Q QRE T+ FR+G+F LI T+V ARG+D+P VDL+I+
Sbjct: 420 LAMNDKLVTMGTQVLHGDIQQKQREVTMQGFREGKFTSLITTNVCARGVDIPEVDLVINC 479
Query: 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
E P+ E+++HR+GRTGRAGK G + Y Q +++I R G F ++
Sbjct: 480 EPPSDVESYIHRSGRTGRAGKSGICVTFYKPNQEYALQNIARHAGVNFIKI 530
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 172/378 (45%), Positives = 240/378 (63%), Gaps = 8/378 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +S +I + + L +GI LFPIQ E G DM+GRARTG GKTLAF +P+L
Sbjct: 110 MAVSNFNIGKALRDKLKAKGIESLFPIQAQTFEAVFDGNDMVGRARTGQGKTLAFVLPVL 169
Query: 159 DKIIK--FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
+ + + + + RGR +VLAPTRELAKQV +F SA L T+CVYGG P Q
Sbjct: 170 ESLSQSGYTKNLQRGRAAAVIVLAPTRELAKQVHADFETYGSAVGLSTVCVYGGAPYGPQ 229
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
AL GVD VVGTPGR+ D +R LNL ++F +LDEAD+ML++GF +DVE IL +
Sbjct: 230 ENALRRGVDIVVGTPGRIKDHFERGTLNLKSLKFRILDEADEMLNMGFVDDVETILGGVD 289
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P Q+++FSAT+P W++ + K+LK TVDLVGD K ++ + + +
Sbjct: 290 DPSKVQTLLFSATLPTWVQQIARKFLKATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRT 349
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +I+ + GG+ IVFT+TK DA LA A+ KS LHGDI Q+QRE TL FR
Sbjct: 350 QLVQDVISCYGSGGRIIVFTETKNDASELAGAL-KSGTARALHGDIPQNQREVTLQGFRT 408
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F++L+ATDVAARGLD+ +V L+I E P +ET++HR+GRTGRAG G ++L + ++
Sbjct: 409 GKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGNTGVSVLFFDRKK 468
Query: 452 ARQVKSIERDVGCRFTQL 469
V IER G +F ++
Sbjct: 469 EYMVPQIERKAGFKFERI 486
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 174/438 (39%), Positives = 270/438 (61%), Gaps = 23/438 (5%)
Query: 51 IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYD-----DSSKDEGLDISKLD 105
+ RF +R H S L + S+ + +S D V + SK + +
Sbjct: 52 VACRFGGASRR-HQCS--LKMQLSLPSEELESTKQDGVVIEAENATSESKHRDWSLERFP 108
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ AAL ++GI++L IQ GRD+IGR+ TGTGKT AFG+P+++++++
Sbjct: 109 LSEATAAALRKKGITELTEIQAITFNDMRSGRDVIGRSHTGTGKTFAFGVPLVERMVEAR 168
Query: 166 EKHGR-----GRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
+G GR+P LVL PTRELAKQV ++ L C YGG + Q AL
Sbjct: 169 VSNGSRRGAPGRSPCALVLTPTRELAKQVTEQLRLIGQPHGLAVDCFYGGASYTQQEEAL 228
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QN 276
G D +VGTPGR++D + R LNLS ++ VLDEAD+MLS+GFAEDVE I +++P +
Sbjct: 229 RRGFDVLVGTPGRILDHLDRGTLNLSNIRIAVLDEADEMLSLGFAEDVERIFQKMPPKEE 288
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT--SMYEKPSII 334
RQ+++FSAT+PPW++ + ++ + P+ D+VG ++ + A + ++ + + + +++
Sbjct: 289 RQTVLFSATIPPWVQKIAAQHQRAPVVHDVVGRTETRAAKNVRHVAVRVPDADFARFAML 348
Query: 335 GQLITEHAKGG--KCIVFTQTKRDADRLAH--AMAKSYNCEPLHGDISQSQRERTLSAFR 390
++ HA+ G +CIVFT TKR+AD +A ++ +S + LHGD+SQ QRE TL FR
Sbjct: 349 EDIVFAHAETGNQRCIVFTDTKREADEIAMTASIFRSSVAQVLHGDVSQRQRELTLQQFR 408
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
DGRF+IL+ATDVAARGLD+ VD+I+ P +T++HR GRTGRAG+ G+A+++Y+D
Sbjct: 409 DGRFSILVATDVAARGLDIHEVDVIVQMRPPRDVDTYIHRAGRTGRAGRSGTAVIMYSDS 468
Query: 451 QARQVKSIERDVGCRFTQ 468
+ ++++ER RF Q
Sbjct: 469 ERGLLRALERGASIRFEQ 486
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/374 (43%), Positives = 236/374 (63%), Gaps = 6/374 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ DIS L + G LFPIQ + M G D+ G+ARTG GKTL+F +P+++K
Sbjct: 118 LDNFDISDKSRNNLEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEK 177
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LV+APTRELA QV +EF + PSL + C+YGGT Q RA
Sbjct: 178 LLA-SPDTTRGRRPRVLVMAPTRELASQVWREFQKVGPSLASTCIYGGTDYEPQRRAFRN 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D VVGTPGR++D ++ AL L+ +Q++VLDEAD+ML VGF + VE +L E+ Q
Sbjct: 237 GLDVVVGTPGRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQK 296
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP+I+S KY+ VD VG + + G+ ++ + ++I
Sbjct: 297 PQMILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIAD 356
Query: 337 LITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ ++ G+ ++FTQTKRDA+ LA + LHGDI+Q QRE +L FRDG+
Sbjct: 357 VVQVYSGAHGRTMIFTQTKRDANELALNDTLKQEVQVLHGDIAQKQRELSLQCFRDGKVR 416
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
L+ATDVAARG+D+P VDL++ E P E+++HR+GRTGRAG+KG+ I Y Q +Q+
Sbjct: 417 CLVATDVAARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTCICFYKPNQEQQL 476
Query: 456 KSIERDVGCRFTQL 469
+ +ER G FT++
Sbjct: 477 REVERRAGISFTRI 490
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/366 (45%), Positives = 238/366 (65%), Gaps = 11/366 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S+ +AAL +GI+ PIQ L A+ G D++G ARTGTGKTLAF +PI +++
Sbjct: 13 ELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERL- 71
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
GR P LVLAPTRELA QV E AP L + VYGGT Q AL G
Sbjct: 72 --EPSRTPGRPPRALVLAPTRELALQVAGELEWVAPHLRIVTVYGGTGYGSQAAALKRGA 129
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VV TPGR ID + R L+L++V+ VLDEAD+MLS+GF E VE +L P RQ++MF
Sbjct: 130 DVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLMF 189
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SAT+P W + L ++LK P V++V D + + +I S + S + L+ HA
Sbjct: 190 SATLPGWAKRLVGRHLKEPTVVNVVQDEEVSYRE----IAIEASPSARMSALSDLL--HA 243
Query: 343 KGG-KCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
G + IVFT+TK++AD +A A+ A+ + E +HGD++Q+QRER++ FR G+ +L+AT
Sbjct: 244 HGPERAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVAT 303
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+P VDL++H LP +E++ HR+GRTGRAG+ G+ I+ ++ ++ R++ +ER
Sbjct: 304 DVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQLER 363
Query: 461 DVGCRF 466
VG +F
Sbjct: 364 AVGRKF 369
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/379 (45%), Positives = 246/379 (64%), Gaps = 16/379 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +S+ I+ L RG+ PIQ A E GRD+IGR+RTGTGKTLAF +PI+ K+
Sbjct: 193 TSFQLSKKILEILEERGLRDATPIQSATFELIYSGRDIIGRSRTGTGKTLAFVLPIMQKL 252
Query: 162 IKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRA 217
++ E H R CLVLAPTRELAKQVE+EF A T C +GG+ Q RA
Sbjct: 253 VEQLETHNIDRVSEIQCLVLAPTRELAKQVEQEFSAFAKCFRFRTSCFFGGSSYEVQQRA 312
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--Q 275
+ G+D +V TPGR+IDL++R +++L +V+F VLDEAD+MLS+GFAED++ I LP +
Sbjct: 313 IKRGIDILVATPGRLIDLLERGSVDLLKVKFFVLDEADEMLSMGFAEDIDKISTYLPPTR 372
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA---DGISLYSIATSMYEKPS 332
RQ+++FSAT+PPW++ L NP+ VD +G+ D K + + I+L T + K
Sbjct: 373 ERQTLLFSATIPPWVQELAKSNKNNPIIVDAIGNKDTKTSTTVEHIALRVPPTELSRK-L 431
Query: 333 IIGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQSQRERTLS 387
I+ +I+ ++ +CIVF +TK + D L + + +N + LHGDI+Q QRE TLS
Sbjct: 432 ILESVISVYSAEMTNFRCIVFARTKAEVDSLVSS-GRIHNGAAQALHGDITQKQREITLS 490
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR+G F +LIATDVAARGLD+ VDL+I Y +P + ++HR GRTGRAG++G+ I++Y
Sbjct: 491 KFREGSFQVLIATDVAARGLDINGVDLVIQYRVPEDIDMYIHRAGRTGRAGRQGTCIILY 550
Query: 448 TDQQARQVKSIERDVGCRF 466
TD++ ++ +E RF
Sbjct: 551 TDEERNKLTLMENVCKIRF 569
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/387 (42%), Positives = 241/387 (62%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ V L RG++ LFP+Q P G+D+I +A+TGTGKT +F IP+++K
Sbjct: 872 FSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGTGKTFSFAIPLIEK 931
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 932 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQIDLIRS 991
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 992 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 1051
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 1052 NPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAIECHWSQRAAVI 1111
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK+DA+ LA + +C+ LHGDI Q QRE TL FR+G
Sbjct: 1112 GDVIQVYSGSHGRTIVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGA 1171
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 1172 FKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEN 1231
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 1232 QLRYVEQKAGITFK---RVGVPTATDI 1255
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/386 (42%), Positives = 240/386 (62%), Gaps = 10/386 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS+ + L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP+++K+
Sbjct: 136 SNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEKL 195
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+ + G
Sbjct: 196 QADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQIDLIRSG 255
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQN 276
+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL + N
Sbjct: 256 IDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSEDN 315
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++IG
Sbjct: 316 PQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQRAAVIG 375
Query: 336 QLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I ++ G+ IVF +TK+DA+ LA + +C+ LHGDI Q QRE TL FR+G F
Sbjct: 376 DVIQVYSGSYGRTIVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAF 435
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++ Q
Sbjct: 436 KVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEENQ 495
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGDM 480
++ +E G F R+ V D+
Sbjct: 496 LRYVEVKAGITFK---RVGVPTATDI 518
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/376 (43%), Positives = 238/376 (63%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + + L RG+S LF IQ G+D+IG+ARTGTGKT +F +P+++K
Sbjct: 168 FSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEK 227
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR P LVLAPTRELA QV K+F + L C YGG+ + Q+ A+
Sbjct: 228 LQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRKLSVTCFYGGSSYNPQIDAIRS 287
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+LS++Q VVLDE DQML +GFAE VE IL + Q
Sbjct: 288 GIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKKDAEQ 347
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+++FSAT P W+ + KY+++ + VDL+G QK A + +IA ++ S+I
Sbjct: 348 KPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVI 407
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 408 GDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQSAQSLHGDIPQKQREVTLKGFRNGS 467
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I PN E+++HR+GRTGRAG+ G I Y ++
Sbjct: 468 FEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQRKEES 527
Query: 454 QVKSIERDVGCRFTQL 469
Q+K +E+ G F ++
Sbjct: 528 QLKFVEQKAGITFKRV 543
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 165/374 (44%), Positives = 237/374 (63%), Gaps = 6/374 (1%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D+ + + + +S +A L +GI LFPIQ P +G+D++ +ARTG+GKT
Sbjct: 187 DEEADNSEFALKNFGVSATSIANLHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKT 246
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
L+F +P++++++K N + +GR P LV+APTRELA QV + F AP L +ICVYGG
Sbjct: 247 LSFALPVIERLLK-NPRSEKGRAPAVLVMAPTRELASQVHRVFESVAPQLASICVYGGVE 305
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q A+ G+D VVGTPGR+ID R L+L + ++LDEAD+ML VGF E+V+ I+
Sbjct: 306 YGPQELAMRKGLDVVVGTPGRLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIM 365
Query: 271 ERLP---QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
LP + ++FSATMP W+++LT KY + + + VDLV +DQ+ + I +I
Sbjct: 366 AGLPIGDAKPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCP 425
Query: 327 MYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
E+ + IG ++ ++ G+C+VF TK +A+ LA + LHGDI+Q QRE T
Sbjct: 426 WQERANAIGDVVRVYSGSHGRCMVFASTKEEANDLALNGRIAGETHVLHGDIAQKQREIT 485
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L+ FR G+F L+ATDVAARGLD+P V+L+I E P ET++HR GRTGRAGK G+ IL
Sbjct: 486 LAGFRSGKFRCLVATDVAARGLDIPEVELVIQTEPPIDVETYIHRAGRTGRAGKSGTCIL 545
Query: 446 IYTDQQARQVKSIE 459
Y QQ V+ IE
Sbjct: 546 FYKPQQESLVRRIE 559
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 170/428 (39%), Positives = 256/428 (59%), Gaps = 15/428 (3%)
Query: 66 SRPLDFKSSIAWQ---HAQSAVDDYVAYDDSSKDEGL----DISKLDISQDIVAALARRG 118
S P DF S+ A + A+ D + + +G I +SQ+ L R G
Sbjct: 15 SAPADFGSAAALELDDDAEVEADADAELESLAPQKGFVDQKPIEDFALSQETQRNLLRAG 74
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
++ LFP+Q + M+G D++GR++TG+GKTLAF +PI++ I+ N K+ R NP LV
Sbjct: 75 VTHLFPVQTQSFDVMMRGADIMGRSKTGSGKTLAFALPIVETILA-NRKNTR--NPQALV 131
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
L PTRELA+QV E AP L T+ V GG + Q L G D +VGTPGR++DL+ +
Sbjct: 132 LLPTRELAQQVHDEVQRVAPQLRTVNVVGGVSYTVQENHLRRGADILVGTPGRIMDLVDK 191
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
+L+L +V VLDEAD ML GF E VE IL +P+ Q++M+SAT P W+ S+ K+L
Sbjct: 192 GSLSLDDVDVAVLDEADMMLKFGFQEAVETILGWVPEGGQTVMWSATFPKWVSSMAKKFL 251
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD 358
K P+++DLVGD D ++ ++ +I + ++ ++ ++ HA G+ +VFT+TK++AD
Sbjct: 252 KEPVSIDLVGDEDNQVPATVAHKAINAPVRDRIQVLENVLRLHAHDGQTLVFTETKQEAD 311
Query: 359 RLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
+A+++ + LHGD+SQ R T+S FR+G L+ TD+AARGLD+ NV+L++ Y
Sbjct: 312 EIANSL-PGQDARALHGDLSQGMRTSTMSGFRNGHVKTLVCTDIAARGLDIANVELVVQY 370
Query: 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL----PRIAV 474
LP+ E+FVHR GRTGRAG+ G+ I+ + + A V ER +F P +
Sbjct: 371 RLPSDKESFVHRAGRTGRAGRSGTNIVFFDGRDASDVLDFERRYKFKFAHAAPPHPEQMI 430
Query: 475 EGGGDMYN 482
EG + N
Sbjct: 431 EGALEDVN 438
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/389 (43%), Positives = 243/389 (62%), Gaps = 12/389 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+ L + +S ++V+AL ++GI LF IQ L+ A+ G+D++GRARTG GKTL
Sbjct: 75 DARTPNPLALENFSLSPEVVSALQKKGIDALFAIQAQTLDTALSGKDIVGRARTGCGKTL 134
Query: 152 AFGIPILDKIIKFNE-----KHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTIC 204
AF +PI+++I K + + +GR P+ VL PTRELAKQV +F A +L T+C
Sbjct: 135 AFVLPIVEQINKSDPTPASGRRLQGRRPVVCVLCPTRELAKQVGADFDWVGQAFNLKTVC 194
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG P Q + L G D +VGTPGRV D + R L ++F VLDEAD+ML++GF +
Sbjct: 195 VYGGAPYRDQEQGLRSGCDIIVGTPGRVKDHLDRKNLKFDNLKFRVLDEADEMLNMGFVD 254
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
DVE IL ++ + Q+++FSAT+PPW++ + ++LK T+DLVG+ QK + + +
Sbjct: 255 DVETIL-KVSGDIQTLLFSATLPPWVKDIAKRFLKKDYATIDLVGNEKQKASGQVQHLLL 313
Query: 324 ATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQS 380
E+ S+I LI A GG+CI+F TKRD L A+ S + LHGDI+Q+
Sbjct: 314 PCQWQERVSLIPDLIRAKAPTGGRCILFCDTKRDCTELCDALQSSLEKGAKALHGDIAQN 373
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK 440
RE L FRD +F +L+ATDVAARGLD+ V+L+I E P ET++HR+GRTGRAG
Sbjct: 374 NREVVLQGFRDNKFQVLVATDVAARGLDISGVELVIQCEPPKDPETYIHRSGRTGRAGAT 433
Query: 441 GSAILIYTDQQARQVKSIERDVGCRFTQL 469
G + + T + + +IER G RF ++
Sbjct: 434 GICVTLLTPRNEWAIPNIERKGGFRFVRI 462
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/385 (43%), Positives = 240/385 (62%), Gaps = 15/385 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E + I + L RGI LFPIQ + + G+D++GRARTG GKTLAF +
Sbjct: 103 EENPSLDNFRICDETKKNLQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFAL 162
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
P+++ +++ RGR P + +APTRELAKQV EF + PSL T+C+YGG Q
Sbjct: 163 PVIELLLQDKRPRARGRAPRVVCMAPTRELAKQVATEFELTGPSLSTVCIYGGASYQSQN 222
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
A GVD +VGT GRVID I R L L +F++LDEAD ML +GF EDV+ + + Q
Sbjct: 223 NAFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQ 282
Query: 276 -------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
RQ+++FSAT+P W++ + +KY+K V+LV DSD + + + +I
Sbjct: 283 VKNESTGKRQTLLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQ 342
Query: 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
+P+++ L+ +A K + I+F +TK+D + LA +C+ LHGDI+Q QRE T+
Sbjct: 343 GRPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMK 402
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTS------ETFVHRTGRTGRAGKKG 441
AFR+GR +LIATDVAARGLD+ NVDL+I+ E P +T+VHR+GRTGRAGKKG
Sbjct: 403 AFREGRLRLLIATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKG 461
Query: 442 SAILIYTDQQARQVKSIERDVGCRF 466
I +YT++Q Q+ IER +G +F
Sbjct: 462 ICITLYTNRQRDQLNQIERKIGNKF 486
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 162/387 (41%), Positives = 238/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 112 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 171
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 172 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 231
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 232 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 291
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 292 NPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 351
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 352 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 411
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 412 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 471
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 472 QLRYVEQKAGITFK---RVGVPSTMDL 495
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/387 (41%), Positives = 239/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP+++K
Sbjct: 138 FSNFSISKETVQLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIEK 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR P LVL PTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 198 LQGESQERRRGRPPKVLVLCPTRELANQVAKDFKDITRKLTVGCFYGGTPYNGQIDLMRS 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 258 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K +DL+G QK A + +I ++ ++I
Sbjct: 318 NPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECHWSQRAAVI 377
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ LA + +C+ LHGDI Q QRE TL FR+G
Sbjct: 378 GDVIQVYSGSQGRTIVFCETKKEANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGS 437
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 438 FKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEY 497
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 498 QLRHVEQKAGITFK---RVGVPTATDI 521
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/387 (41%), Positives = 238/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 500
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 501 QLRYVEQKAGITFK---RVGVPSTMDL 524
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 244/374 (65%), Gaps = 13/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ S + ++ A+ +G + PIQ A + A++G+D++G+ARTGTGKTLAFGIPI
Sbjct: 1 MEFSAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P L+L PTRELA QV KE AP L +YGGT Q AL
Sbjct: 61 NRLDAARE---RGRAPRALILTPTRELALQVAKELEWLAPHLTITPIYGGTGYGKQAEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR ID +++ L+LS ++ VLDEAD+MLS+GF E VE +LE P RQ
Sbjct: 118 KRGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS--MYEKPSIIGQ 336
+++FSAT+P W R L+ +Y K + ++++ D + IS +A ++ + S++
Sbjct: 178 TLLFSATLPTWARRLSERYQKAAIHINVIKD------EAISYEEVAIQAPIHNRLSVLSD 231
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ +A + IVFT TK + + LA + +++++ P+HGD+ Q RER + FR G +
Sbjct: 232 LLFAYAP-ERTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVS 290
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+P VDL++HY LP+ +E+++HR+GRTGRAG+ G +++Y ++ R++
Sbjct: 291 VLVATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKREL 350
Query: 456 KSIERDVGCRFTQL 469
+++ER++ F ++
Sbjct: 351 ETLERELKRNFKRV 364
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 98 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 157
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 158 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 217
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 218 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 277
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 278 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 337
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 338 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 397
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 398 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 457
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 458 QLAQVEQKAGIKFKRI 473
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 619
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 620 QLAQVEQKAGIKFKRI 635
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 241 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 300
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 301 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 360
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 361 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 420
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 421 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 480
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 481 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 540
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 541 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 600
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 601 QLAQVEQKAGIKFKRI 616
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 214 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 273
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 274 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 333
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 334 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 393
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 394 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 453
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 454 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 513
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 514 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 573
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 574 QLAQVEQKAGIKFKRI 589
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 619
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 620 QLAQVEQKAGIKFKRI 635
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 619
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 620 QLAQVEQKAGIKFKRI 635
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 619
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 620 QLAQVEQKAGIKFKRI 635
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/387 (42%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + + L RGIS LF IQ +G+D+IG+ARTGTGKTLAF IP+++K
Sbjct: 35 FSNFRISPNTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEK 94
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P L LAPTRELA QV K+F + L C YGG+ + Q+ A+
Sbjct: 95 LQNDPDDKRRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRS 154
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ N L+LS+++ VVLDE DQML +GFAE VE IL Q
Sbjct: 155 GIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSET 214
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + +Y++ VDL+G QK A + +IA ++ ++I
Sbjct: 215 NPQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVI 274
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ IVF +TK+DA+ L+ + + + LHGDI Q QRE TL FR G
Sbjct: 275 GDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGT 334
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 335 FEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEED 394
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 395 QLRYVEQKAGITFK---RVGVPTANDI 418
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 499
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F ++
Sbjct: 500 QLRYVEQKAGITFKRV 515
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 40 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 99
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 100 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 159
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 160 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 219
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 220 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 279
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 280 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 339
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 340 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 399
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 400 QLAQVEQKAGIKFKRI 415
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/391 (43%), Positives = 238/391 (60%), Gaps = 17/391 (4%)
Query: 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
+D S +E D K IS I +L RGI+ LFPIQ + G+D+IG+ARTGTGK
Sbjct: 43 HDSGSMEEKGDFKKFRISSAIADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGK 102
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
TL+F +PI +K+IK + R P LVLAPTRELA Q+ EF + SL +C+YGG
Sbjct: 103 TLSFALPITEKLIKKKRSDDKIRPPKVLVLAPTRELAIQITSEFKALSGSLKVVCIYGGV 162
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P + Q L G+D V+GTPGR+ D I R L LS+++ VVLDE D+ML +GF + VE I
Sbjct: 163 PYAEQENHLRNGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEI 222
Query: 270 L------ERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYS 322
L +R P Q+++FSATMP W +KY+K + VDL+G + + +
Sbjct: 223 LSHAYVKDRHP---QTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKV 279
Query: 323 IATSMYEKPSIIGQLIT----EHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
I+ +E+ + IG L+ +HA + I+F+ TK++A+ LA + + LHGDI
Sbjct: 280 ISCPYHERAATIGDLVKVYGGDHA---RTIIFSPTKKEANELALSSVLKQEVQVLHGDIQ 336
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
Q+QRE TL FR+G F L+ATDVAARGLD+P VDL+I E P ++T++HR+GRTGRA
Sbjct: 337 QAQREVTLKGFREGNFPCLVATDVAARGLDIPEVDLVIQCEPPKDADTYIHRSGRTGRAN 396
Query: 439 KKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
+ G I Y ++KSIE + G F ++
Sbjct: 397 RTGICITFYKPTHQDRIKSIESEAGINFCRI 427
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 244/376 (64%), Gaps = 26/376 (6%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-----KFNEKH 168
L+ +GI+ P+Q + P + GRD+IGR+RTGTGKTLAFG+P L +++ K N +
Sbjct: 1 LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60
Query: 169 GR--------GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI--CVYGGTPISHQMRAL 218
GR GR P +VL PTRELA+QVE E L C +GG Q RAL
Sbjct: 61 GRDGSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277
GVD +VGTPGRVID I R L+LSE VVLDEAD+ML++GFAEDVEVILE + +NR
Sbjct: 121 RQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNR 180
Query: 278 ---QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATSM--YEKP 331
Q ++FSAT PPW++ + + Y ++ L++D+ G+ + ++A + +I K
Sbjct: 181 EKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKK 240
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFR 390
+I+ +I A GK IVFT+TK++AD L ++ K+ + + +HGDI Q QR+ TL+AFR
Sbjct: 241 AILEDII---ALFGKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFR 297
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G FN+L+ATDVAARG+D+ +VDL+I +E P +T+VHR+GRTGRAG G ++L++
Sbjct: 298 AGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQN 357
Query: 451 QARQVKSIERDVGCRF 466
QAR + IE+ +G F
Sbjct: 358 QARDIVRIEKSLGHGF 373
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 483
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 484 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 543
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 544 QLAQVEQKAGIKFKRI 559
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 237/388 (61%), Gaps = 10/388 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++
Sbjct: 139 DFSNFPISEETVKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 198
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 RLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIR 258
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LP 274
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 NGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSE 318
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
N Q+++FSAT P W+ + KY+K VDLVG QK A + +I ++P++
Sbjct: 319 DNPQTLLFSATCPQWVYKVAKKYMKPRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAV 378
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 IGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREG 438
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 SFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRER 498
Query: 453 RQVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 GQLRYVEQKAGITFK---RVGVPSTMDL 523
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 234/375 (62%), Gaps = 7/375 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K+
Sbjct: 141 SNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIEKL 200
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+ E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ + G
Sbjct: 201 QRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRNG 260
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQN 276
+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL N
Sbjct: 261 IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSEDN 320
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++IG
Sbjct: 321 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 380
Query: 336 QLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G F
Sbjct: 381 DVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSF 440
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++ Q
Sbjct: 441 KVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQ 500
Query: 455 VKSIERDVGCRFTQL 469
++ +E+ G F ++
Sbjct: 501 LRYVEQKAGITFKRV 515
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F ++
Sbjct: 499 QLRYVEQKAGITFKRV 514
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 499
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F ++
Sbjct: 500 QLRYVEQKAGITFKRV 515
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 500
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F ++
Sbjct: 501 QLRYVEQKAGITFKRV 516
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 233/375 (62%), Gaps = 7/375 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K+
Sbjct: 137 SRFPISEETVKLLKARGVTYLFPIQVKTFSPVYEGKDLIAQARTGTGKTFSFAIPLIEKL 196
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+ E+ + R+P LVLAPTRELA QV K+F + L C YGGTP Q+ + G
Sbjct: 197 QRDQEEMKKNRSPKVLVLAPTRELANQVAKDFQDITRKLSVACFYGGTPYQGQINHIRRG 256
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLPQN 276
+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+ N
Sbjct: 257 IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSEDN 316
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT P W+ + KY+K +DLVG QK A + +I ++ ++IG
Sbjct: 317 PQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVIG 376
Query: 336 QLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G F
Sbjct: 377 DVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGNF 436
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y + Q
Sbjct: 437 KVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPNERGQ 496
Query: 455 VKSIERDVGCRFTQL 469
+K +E G F ++
Sbjct: 497 LKYVEGKAGITFKRV 511
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 341 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEK 400
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTREL+ QV K+F + L C YGGTP + Q+ +
Sbjct: 401 LQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITKKLTVACFYGGTPYNGQIDLIRR 460
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++VQ VVLDE DQML +GFAE VE IL +
Sbjct: 461 GIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSED 520
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 521 NPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVI 580
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G+
Sbjct: 581 GDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGK 640
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 641 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQKKEQH 700
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +ER G F ++
Sbjct: 701 QLAQVERQAGITFKRV 716
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 138 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 198 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 258 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 318 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 377
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 378 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 437
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 438 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 497
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F ++
Sbjct: 498 QLRYVEQKAGITFKRV 513
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F ++
Sbjct: 499 QLRYVEQKAGITFKRV 514
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 500
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 501 QLRYVEQKAGITFK---RVGVPSTMDL 524
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 161/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 137 FSNFSISEETVKLLKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIER 196
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 197 LQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 256
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 257 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 316
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 317 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 376
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 377 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 436
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 437 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 496
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 497 QLRYVEQKAGITFK---RVGVPSTMDL 520
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 250 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQLERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 549
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 550 QLAQVEQKAGIKFKRI 565
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 154 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLIEK 213
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTREL+ QV K+F + L C YGGTP + Q+ +
Sbjct: 214 LQGDTQPRARGRAPKILVLAPTRELSIQVSKDFSDITRKLTVACFYGGTPYNGQIDLIRR 273
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+LS+VQ VVLDE DQML +GFAE VE IL +
Sbjct: 274 GIDILVGTPGRIKDHLQNGRLDLSKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSED 333
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 334 NPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVI 393
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G+
Sbjct: 394 GDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGK 453
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 454 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQKKEQH 513
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +ER G F ++
Sbjct: 514 QLAQVERQAGITFKRV 529
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 128 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 187
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 188 LQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 247
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 248 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 307
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 308 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 367
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 368 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 427
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 428 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 487
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 488 QLRYVEQKAGITFK---RVGVPSTMDL 511
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 499
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 500 QLRYVEQKAGITFK---RVGVPSTMDL 523
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 238/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L+ C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLNVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 496 QLRYVEQKAGITFK---RVGVPSTMDL 519
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 479
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 480 QLVQVEQKAGIKFKRI 495
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 168/382 (43%), Positives = 246/382 (64%), Gaps = 15/382 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + AL +RGI LFPIQ E + G D++GRARTG GKTLAF +PIL+
Sbjct: 65 VTRFRISEPLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILES 124
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + K G GR P LVL PTRELA QV ++F + A L++ CVYGG Q
Sbjct: 125 LVNGPAKASRKTGYGRPPSVLVLLPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQ 184
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I++ ++LS ++F VLDE+D+ML +GF EDVE+IL ++
Sbjct: 185 EFALKRGVDIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVE 244
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
R Q+++FSAT+P W++++++++LK T+DLVG+ K + + + S P
Sbjct: 245 DVRKVQTLLFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMP 304
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I+ + GG+ I+FT+ + A+ LA + LHG+I QS+RE TLS FR
Sbjct: 305 QVIPDVISCYGSGGRTIIFTEKRESANELAGLLP---GARALHGEIQQSKREVTLSGFRS 361
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F L+AT+VAARGLD+ +V LII E PN E ++HR+GRTGRAG G A+++Y D +
Sbjct: 362 GKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLY-DPR 420
Query: 452 ARQVKSIERDVGCRFTQL--PR 471
+ I+R+ G +F + PR
Sbjct: 421 RSNISKIQRESGVKFEHITAPR 442
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 242/378 (64%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + A L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 107 VTQFRISEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILES 166
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + G GR+P +VL PTRELA QV ++F + LD+ C+ GG Q
Sbjct: 167 LVNGPYKSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQ 226
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I RN ++L ++F VLDEAD+ML++GF +DVE IL ++
Sbjct: 227 EIALKRGVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVA 286
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++++T+++LK + TVDLVG+ K + + I S E+
Sbjct: 287 DVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERS 346
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A LA + PLHGDI QSQR T+S FR
Sbjct: 347 RLIPDIIRCYSSGGRTIIFTETKESASELAGLLP---GARPLHGDIQQSQRSVTISGFRS 403
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F IL+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+ +Y ++
Sbjct: 404 GKFLILVATNVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRK 463
Query: 452 ARQVKSIERDVGCRFTQL 469
+ ++ IERD G +F L
Sbjct: 464 SGRIARIERDSGVKFEHL 481
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRSQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 479
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 480 QLVQVEQKAGIKFKRI 495
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 479
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 480 QLVQVEQKAGIKFKRI 495
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 243/378 (64%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + A L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 658 VTQFRISEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILES 717
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + G GR+P +VL PTRELA QV ++F + LD+ C+ GG Q
Sbjct: 718 LVNGPYKSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQ 777
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I RN ++L ++F VLDEAD+ML++GF +DVE IL ++
Sbjct: 778 EIALKRGVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVA 837
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++++T+++LK + TVDLVG+ K + + I S E+
Sbjct: 838 DVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERS 897
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A LA + + PLHGDI QSQR T+S FR
Sbjct: 898 RLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGA---RPLHGDIQQSQRSVTISGFRS 954
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F IL+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+ +Y ++
Sbjct: 955 GKFLILVATNVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRK 1014
Query: 452 ARQVKSIERDVGCRFTQL 469
+ ++ IERD G +F L
Sbjct: 1015 SGRIARIERDSGVKFEHL 1032
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 238/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L+ C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLNVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 496 QLRYVEQKAGITFK---RVGVPSTMDL 519
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 172/384 (44%), Positives = 241/384 (62%), Gaps = 30/384 (7%)
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK------FN 165
A LA+RGI + IQ + A GRD++G++RTGTGKTLAFG+P+++++ + ++
Sbjct: 100 AKLAQRGIDTMTEIQHLTFDAAHAGRDVLGKSRTGTGKTLAFGLPLVERLAERAREGDYD 159
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
K R R P LVLAPTRELAKQVE E H A + L T C +GG Q AL GVD
Sbjct: 160 PKK-RARGPAILVLAPTRELAKQVEAELHLLAQTHGLSTTCFHGGVSYGPQENALRRGVD 218
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--------- 274
+V T GRVID I R L+LS+ VVLDEAD+MLS+GFA+DVE I
Sbjct: 219 VLVATVGRVIDHIDRGNLDLSDAYHVVLDEADEMLSMGFADDVERIFSDFDLDDLLGAAP 278
Query: 275 ---------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ Q+++FSAT P W++ LT+KYL++P VD+VGD+ Q+ A ++ ++
Sbjct: 279 PPADAAAPLRRPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAATTVTHKAVLV 338
Query: 326 SM--YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQR 382
+ S++ +I GG+ IVFT TK++ D LA A + + LHGDI Q+QR
Sbjct: 339 PRGPDARASLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQR 398
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
E TL+ FR G F +L+ATDVAARG+DV VDL++ Y P +E +VHR+GRTGRAG+ G+
Sbjct: 399 ETTLAQFRRGAFTVLVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRTGRAGRDGT 458
Query: 443 AILIYTDQQARQVKSIERDVGCRF 466
A+++Y +++ R V+S+ER G F
Sbjct: 459 AVVLYDEREERDVRSLERLTGVTF 482
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 479
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 480 QLVQVEQKAGIKFKRI 495
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 169/371 (45%), Positives = 234/371 (63%), Gaps = 8/371 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS + L +GI LF IQ + + G D++GRARTG GKTLAF +PI++ + K +
Sbjct: 87 ISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRKSS 146
Query: 166 E-KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGV 222
K G GR P LVLAPTRELAKQV +F + A L TICVYGG+ Q A+ GV
Sbjct: 147 SGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGV 206
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--QSM 280
D VVGTPGR+ D + R LNL ++F VLDEAD+ML++GF E VE IL + Q++
Sbjct: 207 DIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTSSVQTL 266
Query: 281 MFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSATMP W++ + ++LK N TVDLVGD K ++ + + + + +I +I
Sbjct: 267 LFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVIK 326
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ GG+ IVFT+TK DA LA ++ + PLHGDI Q+QRE TL+ FR +F +L+A
Sbjct: 327 VYGSGGRVIVFTETKNDASELAGSLGTNV-ARPLHGDIPQAQREHTLAGFRSAKFLVLVA 385
Query: 400 TDVAARGLDVPNVDLII-HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
TDVAARGLD+ +V LII E P ET++HR+GRTGRAG G A++++ ++ + I
Sbjct: 386 TDVAARGLDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMI 445
Query: 459 ERDVGCRFTQL 469
E G +F ++
Sbjct: 446 EAKAGFKFEKI 456
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 369 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 428
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ +A + + LHGDI Q QRE TL FR+G
Sbjct: 429 GDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGD 488
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 489 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 548
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 549 QLAQVEQKAGIKFKRI 564
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 500
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F ++
Sbjct: 501 QLRYVEQKAGITFKRV 516
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 250 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQLERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 549
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 550 QLAQVEQKAGIKFKRI 565
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 247/404 (61%), Gaps = 11/404 (2%)
Query: 73 SSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
+ IA + + S ++ + + + EG S IS+ + L RG++ LFPIQ
Sbjct: 165 NEIASEESNSELEQEIPVE---QKEGA-FSNFPISEGTIKLLKARGVTFLFPIQAKTFHH 220
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192
G+D+I +ARTGTGKT +F IP+++K++ + RGR P LVLAPTRELA QV K+
Sbjct: 221 VYSGKDLIAQARTGTGKTFSFAIPLIEKLLGELQDRKRGRAPQVLVLAPTRELANQVSKD 280
Query: 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L++++ VVLD
Sbjct: 281 FSDITKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLD 340
Query: 253 EADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDL 306
E DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+ VDL
Sbjct: 341 EVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL 400
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMA 365
+G QK A + +I ++ ++IG +I ++ G+ I+F +TK++A L+ ++
Sbjct: 401 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS 460
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425
+ + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDL+I P E
Sbjct: 461 IKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVE 520
Query: 426 TFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
+++HR+GRTGRAG+ G I Y ++ Q+ +E+ G +F ++
Sbjct: 521 SYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRI 564
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 479
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 480 QLVQVEQKAGIKFKRI 495
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/386 (42%), Positives = 237/386 (61%), Gaps = 10/386 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS+ + L RG+S LF IQ G D+I +ARTGTGKT +F IP+++K+
Sbjct: 161 SNFRISKVTIDKLKARGVSYLFDIQVKTFNHVYDGEDVIAQARTGTGKTFSFAIPLVEKL 220
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
K + + RGR P LVL PTRELA QV K+F + A + C YGG+ + Q+ A+ G
Sbjct: 221 QKDSVEMARGRPPKVLVLTPTRELAIQVAKDFKDIAKRVSIACFYGGSSYNPQIDAIRNG 280
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQN 276
+D +VGTPGR+ D I+ N LNL++V+ VVLDE DQML +GFAE VE IL + N
Sbjct: 281 IDILVGTPGRIKDHIQNNKLNLTKVKHVVLDEVDQMLDMGFAEQVEEILGSSYKKDSDTN 340
Query: 277 RQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT PPW+ + KY++ N +DL+G QK A + +I ++ ++IG
Sbjct: 341 PQTLLFSATCPPWVYEVAKKYMRPNCKHIDLIGKKTQKAATTVEHLAITCHWSQRAAVIG 400
Query: 336 QLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I ++ G+ IVF +TK++A+ L+ + + + LHGDI Q QRE TL FR+G F
Sbjct: 401 DVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQREMTLKGFRNGAF 460
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++ Q
Sbjct: 461 EVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQ 520
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGDM 480
++ +E G F R+ V D+
Sbjct: 521 LRYVENKAGITFR---RVGVPTANDI 543
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/371 (45%), Positives = 234/371 (63%), Gaps = 8/371 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS + L +GI LF IQ + + G D++GRARTG GKTLAF +PI++ + K +
Sbjct: 50 ISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRKSS 109
Query: 166 E-KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGV 222
K G GR P LVLAPTRELAKQV +F + A L TICVYGG+ Q A+ GV
Sbjct: 110 SGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGV 169
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--QSM 280
D VVGTPGR+ D + R LNL ++F VLDEAD+ML++GF E VE IL + Q++
Sbjct: 170 DIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTSSVQTL 229
Query: 281 MFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSATMP W++ + ++LK N TVDLVGD K ++ + + + + +I +I
Sbjct: 230 LFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVIK 289
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ GG+ IVFT+TK DA LA ++ + PLHGDI Q+QRE TL+ FR +F +L+A
Sbjct: 290 VYGSGGRVIVFTETKNDASELAGSLGTNV-ARPLHGDIPQAQREHTLAGFRSAKFLVLVA 348
Query: 400 TDVAARGLDVPNVDLII-HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
TDVAARGLD+ +V LII E P ET++HR+GRTGRAG G A++++ ++ + I
Sbjct: 349 TDVAARGLDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMI 408
Query: 459 ERDVGCRFTQL 469
E G +F ++
Sbjct: 409 EAKAGFKFEKI 419
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 238/384 (61%), Gaps = 9/384 (2%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K+EG D I+ V L R + KLFP+Q + + G D+I +ARTGTGKTLAF
Sbjct: 86 TKEEG-DFENFRITAQTVTKLKARNVVKLFPVQYSTFDFVYDGWDVITQARTGTGKTLAF 144
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
IP+++++ K RGR P+ +VLAPTRELA QV ++F + L + CVYGGTP
Sbjct: 145 SIPLVERLQKDGVSIKRGRAPVVIVLAPTRELAIQVYEDFKSISTKLTSFCVYGGTPYPP 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q A++ G+D +VGTPGR+ D ++ LNLSE++ VVLDE D+ML +G E V+ ILE
Sbjct: 205 QNDAINRGLDILVGTPGRIQDHVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAA 264
Query: 274 ------PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
QN Q++ FSAT+P W+ KY+K P VD++G + A + +I
Sbjct: 265 YKKDDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCG 324
Query: 327 MYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ +I +IT ++ + G+ +VF +TK++A++L + LHGDI Q+QRE T
Sbjct: 325 WQARAPVIADIITMYSGQHGRAMVFCETKKEANQLVLEGVLKQEAQVLHGDIPQAQRELT 384
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L +FRDG +L+ATDVAARGLD+P VDL++ E P+ ++++HR+GRTGRAG+ G +
Sbjct: 385 LKSFRDGNIQVLVATDVAARGLDIPEVDLVVQCEPPSDVDSYIHRSGRTGRAGRTGVCVC 444
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
Y + + ++ +ER G +F Q+
Sbjct: 445 FYKPNREQDLRFVERRAGIKFRQI 468
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/382 (42%), Positives = 243/382 (63%), Gaps = 12/382 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S+ + A L ++G LF IQ LE A+ G+D++GRARTG GKTLAF +PI+
Sbjct: 83 LALDNFALSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIV 142
Query: 159 DKIIKF-----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPI 211
+++ K N + +GR P+C+VLAPTRELAKQV +F S ++CVYGGTP
Sbjct: 143 EEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVCVYGGTPY 202
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q L G D V+GTPGR+ D ++R L + +++F VLDEAD+ML++GF +DVE+IL
Sbjct: 203 REQEMGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELIL- 261
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
+ + Q+++FSAT+PPW++ + ++LK + TVDLVGD QK + + + ++
Sbjct: 262 KSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDR 321
Query: 331 PSIIGQLITEHAKGG-KCIVFTQTKRDADRLAHAMAKSY--NCEPLHGDISQSQRERTLS 387
++ +I A GG + IVF TKRD L + K + LHGD+SQ QRE L+
Sbjct: 322 VDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLA 381
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR+ +F +L+ATDVAARGLD+ V+L+I E P +ET++HR+GRTGRAG G ++ +
Sbjct: 382 GFREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLC 441
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T + V +IER G +F ++
Sbjct: 442 TPRSEWAVPNIERKGGFKFVRI 463
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 144 FSRFPISEETIKLLKARGVTYLFPIQVKAFSPVYEGKDLIAQARTGTGKTFSFAIPLIEK 203
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ + R+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 204 LQRDQEELKKTRSPKVLVLAPTRELANQVAKDFQDITRKLSVACFYGGTPYQGQINHIRR 263
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+
Sbjct: 264 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSED 323
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K +DLVG QK A + +I ++ ++I
Sbjct: 324 NPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVI 383
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 384 GDVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGS 443
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y +
Sbjct: 444 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPNERG 503
Query: 454 QVKSIERDVGCRFTQL 469
Q+K +E G F ++
Sbjct: 504 QLKYVEGKAGITFKRV 519
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 238/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 71 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 190
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 191 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 250
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 251 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 310
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 311 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 370
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 371 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 430
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 431 QLRYVEQKAGITFK---RVGVPSTMDL 454
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQEAIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D ++GTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILIGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 238/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 71 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 190
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 191 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 250
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 251 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 310
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 311 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 370
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 371 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 430
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 431 QLRYVEQKAGITFK---RVGVPSTMDL 454
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 496 QLRYVEQKAGITFK---RVGVPSTMDL 519
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 DPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 479
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 480 QLVQVEQKAGIKFKRI 495
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFP+Q GRD+I +ARTGTGKT +F IP+++K
Sbjct: 186 FSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIEK 245
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP +Q+ +
Sbjct: 246 LQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLAVACFYGGTPYGNQIERMRN 305
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-----PQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE IL+
Sbjct: 306 GIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKDSED 365
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K VDL+G QK A + +I ++ ++I
Sbjct: 366 NPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAAVI 425
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 426 GDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQDAQSLHGDIPQKQREITLKGFRNGD 485
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 486 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 545
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 546 QLAQVEQKAGIKFKRI 561
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 138 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 198 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+
Sbjct: 258 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFADQVEDIIHESYKTDAED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 318 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 377
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 378 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 437
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 438 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 497
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 498 QLRYVEQKAGITFK---RVGVPSTMDL 521
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 237/386 (61%), Gaps = 10/386 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++++
Sbjct: 141 SNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERL 200
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+ E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ + G
Sbjct: 201 QRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRNG 260
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQN 276
+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ N
Sbjct: 261 IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDN 320
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++IG
Sbjct: 321 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 380
Query: 336 QLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G F
Sbjct: 381 DVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSF 440
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++ Q
Sbjct: 441 KVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQ 500
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGDM 480
++ +E+ G F R+ V D+
Sbjct: 501 LRYVEQKAGITFK---RVGVPSTMDL 523
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 206 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 265
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 266 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 325
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 326 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 385
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 386 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 445
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 446 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 505
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 506 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 565
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 566 QLVQVEQKAGIKFKRI 581
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 173/415 (41%), Positives = 244/415 (58%), Gaps = 25/415 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S ISQ L RGI LFPIQ L+ + G D+IGRARTG GKTLAF +P+++
Sbjct: 144 LSNFKISQATRTRLEARGIKSLFPIQSMTLQKILDGCDLIGRARTGCGKTLAFALPVVEL 203
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALD 219
I +E+ RG P LVLAPTRELAKQV EF AP +L ++C+YGG P Q AL
Sbjct: 204 I--GDEREERGAPPKVLVLAPTRELAKQVADEFEACAPATLRSVCIYGGAPYRPQEEALR 261
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN--- 276
GV VVGTPGR++D I+R L LS ++F++LDEAD ML +GF +D++ + + + Q+
Sbjct: 262 RGVQVVVGTPGRILDHIERGTLKLSGLRFLILDEADSMLDMGFKDDIQKVCDAMGQDSHQ 321
Query: 277 -RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
RQ ++FSAT+PPW++ + +Y++ + VDLV D K + + +I PS
Sbjct: 322 RRQVLLFSATLPPWVQKVAQQYMRKDKLVQVDLVQGEDAKASTDVRHVAIPCHWSSMPST 381
Query: 334 IGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+ + + + + IVF +TK++ + L C LHGDI Q+QRE TL AFR+
Sbjct: 382 VADCLAVYGGSNKARTIVFCETKKECNELVVNPVIKTECAALHGDIPQAQRETTLKAFRE 441
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTS------ETFVHRTGRTGRAGKKGSAIL 445
GR +L+ATDVAARGLD+ VDL++ + P T+ ET+VHR+GRTGRAG+KG +
Sbjct: 442 GRVRVLVATDVAARGLDM-TVDLVVQNKPPVTASGRTDVETYVHRSGRTGRAGRKGICVT 500
Query: 446 IYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYAD 500
+++ + VK IE VG +F G D+ S +M D D
Sbjct: 501 LFSPKYRFAVKEIEGAVGNKFEW-------AGAPQPADIVAASALAAMEDVANVD 548
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 496 QLRYVEQKAGITFK---RVGVPSTMDL 519
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 248 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ +A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGFQGRTIIFCETKKEAQELSQNVAIRQDAQSLHGDIPQKQREITLKGFRNGD 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 DPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 496 QLRYVEQKAGITFK---RVGVPSTMDL 519
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ + L RG+S LF IQ P G D++ +ARTGTGKT +F IP++++
Sbjct: 184 FSNFRISQVTINKLKARGVSYLFDIQVKTFNPVYDGEDVLAQARTGTGKTFSFAIPLVER 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ K + RGR P LVL PTRELA QV K+F + + L C YGG+ + Q+ A+
Sbjct: 244 LQKEGGETTRGRPPKVLVLTPTRELAIQVAKDFKDVSKKLAIACFYGGSSYNPQLDAIRN 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ + LNLS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNHKLNLSDLKHVVLDEVDQMLDMGFAEQVEEILSLSYKKDSDT 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY++ VDL+G Q+ A + +IA ++ ++I
Sbjct: 364 NPQTLLFSATCPPWVYEVAKKYMRPGCKHVDLIGKKTQRAATTVEHLAIACHWSQRAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A+ L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIQVYSGSHGRTIIFCETKKEANELSMNASIKQSSQTLHGDIPQKQREITLKGFRNGA 483
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 484 FEVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEE 543
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E G F R+ V D+
Sbjct: 544 QLRYVENKAGITFR---RVGVPTANDI 567
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/378 (44%), Positives = 240/378 (63%), Gaps = 13/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + L +RGI LFPIQ E + G D++GRARTG GKTLAF +PIL+
Sbjct: 81 VTRFRISEPLREVLKKRGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPILES 140
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + K G GR P LVL PTRELA QV +F + A LD+ CVYGG Q
Sbjct: 141 LVNGLAKASRKTGYGRPPSVLVLLPTRELATQVFDDFKVYGGAMGLDSCCVYGGASYQPQ 200
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I++ ++LS ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 201 EFALKRGVDVVVGTPGRIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILGKVK 260
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ +++K+LK T+DLVG+ K + + + S P
Sbjct: 261 DVNKVQTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTSAIP 320
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +A GG+ I+FT+ + A+ L+ + LHG+I QSQRE TLS FR
Sbjct: 321 QVIPDIIRCYASGGRTIIFTEKRESANELSGLLP---GARALHGEIQQSQREVTLSGFRS 377
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F L+AT+VAARGLD+ +V LII E PN E ++HR+GRTGRAG G A+++Y D +
Sbjct: 378 GKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLY-DPR 436
Query: 452 ARQVKSIERDVGCRFTQL 469
+ I+R+ G +F +
Sbjct: 437 RSNISKIQRESGVKFEHI 454
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/386 (41%), Positives = 235/386 (60%), Gaps = 10/386 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS + L RG+S LF IQ + G D+I +ARTGTGKT +F IP+++K+
Sbjct: 133 SNFRISPVTINKLKARGVSYLFDIQVKTFDSVYDGEDVIAQARTGTGKTFSFAIPLVEKL 192
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+ + RGR P LVL PTRELA QV K+F + L +C YGGT Q+ A+ G
Sbjct: 193 QRDSAGPARGRAPKVLVLTPTRELAIQVAKDFKDIIKKLSIVCFYGGTSYMPQIDAIRNG 252
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQN 276
+D +VGTPGR+ D ++ N L+LS+++ VVLDE DQML +GFAE VE IL + N
Sbjct: 253 IDILVGTPGRIKDHLQNNKLDLSKLKHVVLDEVDQMLDMGFAEQVEEILASSYKKDADTN 312
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT PPW+ + KY++ VDL+G QK A + +IA ++ ++IG
Sbjct: 313 PQTLLFSATCPPWVYDVAKKYMRPKCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIG 372
Query: 336 QLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I ++ G+ IVF +TK++A+ L+ + + + LHGDI Q QRE TL FR+G F
Sbjct: 373 DVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQRETTLKGFRNGSF 432
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++ Q
Sbjct: 433 EVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQ 492
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGDM 480
++ +E G F R+ V D+
Sbjct: 493 LRYVENKAGITFR---RVGVPTANDI 515
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 231/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTREL QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 479
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 480 QLVQVEQKAGIKFKRI 495
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 235/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ + I+F +TK++A L+ +++ + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGYQRRTIIFCETKKEAQELSQSVSIKLDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEH 549
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 550 QLAQVEQKAGIKFKRI 565
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIDRMRN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 369 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 428
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 429 GDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGD 488
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 489 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEY 548
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 549 QLTLVEQKAGIKFKRI 564
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 249 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 308
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 309 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIDRMRN 368
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 369 GIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 428
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 429 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 488
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 489 GDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGD 548
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 549 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEY 608
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 609 QLTLVEQKAGIKFKRI 624
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 164/414 (39%), Positives = 248/414 (59%), Gaps = 11/414 (2%)
Query: 63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
+ S P S A + + S ++ + + + EG S IS++ V L RG++ L
Sbjct: 148 NGFSHPKADSSDAASEESNSEIEQEIPVE---QKEGA-FSNFPISEETVKLLKARGVTFL 203
Query: 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
FPIQ G+D+I +ARTGTGKT +F IP+++K+ + RGR P LVLAPT
Sbjct: 204 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGQLQDRKRGRAPQVLVLAPT 263
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELA QV ++F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+
Sbjct: 264 RELANQVSRDFSDITKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLD 323
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
LS+++ VVLDE DQML +GFAE VE IL + N Q+++FSAT P W+ ++ KY
Sbjct: 324 LSKLKHVVLDEVDQMLDMGFAEQVEDILCVAYKKDSEDNPQTLLFSATCPSWVFNVAKKY 383
Query: 298 LKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKR 355
+K+ VDL+G QK A + +I ++ ++IG +I ++ G+ IVF +TK+
Sbjct: 384 MKSIYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIVFCETKK 443
Query: 356 DADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415
+A L+ + + + LHGDI Q QRE TL FR+G F +++AT+VAARGLD+P VDL+
Sbjct: 444 EAQELSQNASIKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLV 503
Query: 416 IHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
+ P E+++HR+GRTGRAG+ G I Y ++ Q+ +E+ G +F ++
Sbjct: 504 VQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRI 557
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 230/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 217 FSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 276
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV +F + L C YGGTP Q+ +
Sbjct: 277 LQGGLQDKKRGRAPQVLVLAPTRELANQVSNDFSDITKKLSVACFYGGTPYGGQIDCIRS 336
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 337 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 396
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 397 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWSERAAVI 456
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TKR+A L+ + + LHGDI Q QRE TL FR+G
Sbjct: 457 GDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGS 516
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +
Sbjct: 517 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKDEY 576
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 577 QLAQVEQKAGIKFKRI 592
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 235/375 (62%), Gaps = 7/375 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K+
Sbjct: 190 SNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEKL 249
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ + G
Sbjct: 250 LGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKNG 309
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQN 276
+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL + N
Sbjct: 310 IDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDN 369
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++IG
Sbjct: 370 PQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 429
Query: 336 QLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I ++ G+ I+F +TK++A L+ +A + + LHGDI Q QRE TL FR+G F
Sbjct: 430 DVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDF 489
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++ Q
Sbjct: 490 GVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQ 549
Query: 455 VKSIERDVGCRFTQL 469
+ +E+ G +F ++
Sbjct: 550 LAQVEQKAGIKFKRI 564
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 230/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV +F + L C YGGTP Q+ +
Sbjct: 200 LQGGLQDKKRGRAPQVLVLAPTRELANQVSNDFSDITKKLSVACFYGGTPYGGQIDCIRS 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 260 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 320 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWSERAAVI 379
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TKR+A L+ + + LHGDI Q QRE TL FR+G
Sbjct: 380 GDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGS 439
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +
Sbjct: 440 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKDEY 499
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 500 QLAQVEQKAGIKFKRI 515
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 241/387 (62%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ DIS+ V L RG+S LFP+Q P ++G+D+I +ARTGTGKT +F IP+++K
Sbjct: 132 FANFDISKATVDLLKARGVSYLFPVQVKTFMPILEGKDVIAQARTGTGKTFSFAIPLIEK 191
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + ++ RGR+P LVL PTRELA QV ++F + L C YGGT + Q+ +
Sbjct: 192 LDRDPQERKRGRSPKVLVLTPTRELAMQVARDFKDITKKLTVACFYGGTAYNGQLDLIRN 251
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L++S+++ VVLDE DQML +GFAE VE IL +
Sbjct: 252 GIDILVGTPGRIKDHLQNNKLDISKLRHVVLDEVDQMLDMGFAEQVEEILVNSYKKDSED 311
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ DL+G +K A + +I ++ ++I
Sbjct: 312 NPQTLLFSATCPQWVYNVAKKYMKSKYEQFDLIGKKTKKTATTVEHLAIECHWSQRAAVI 371
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A LA + + + LHGDI Q QRE TL FR+G
Sbjct: 372 GDVIQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGDIPQKQREVTLKGFRNGA 431
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 432 FEVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGLCICFYQRREDY 491
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q+K +E+ G F R+ V D+
Sbjct: 492 QLKQVEQKAGITFK---RVGVPTATDI 515
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 236/387 (60%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAWFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 233/387 (60%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +SQ+ V L RGI LFP+Q +P G+D+I +ARTGTGKT +F +P+++K
Sbjct: 24 FSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIEK 83
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVL PTRELA QV K+F L C YGG+P Q+ L
Sbjct: 84 LQSVTQDGRRGRAPKVLVLVPTRELATQVAKDFKNLTKKLSVACFYGGSPYKEQLDLLKS 143
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D +VGTPGR+ D I+ + L LS V+ VVLDE D ML +GFAE VE IL +R +N
Sbjct: 144 GIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSSYKRGSEN 203
Query: 277 R-QSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+++FSAT P W+ + KY+++ +DL+G Q+ A + +I ++ ++
Sbjct: 204 NPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRSSQRAGVL 263
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ LA + + + LHGDI Q QRE TL FR+G
Sbjct: 264 GDIIQVYSGSRGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQKQREITLKGFRNGV 323
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +LIAT+VAARGLD+P VDL+I P ++++HR+GRTGRAG+ G I ++ ++
Sbjct: 324 FEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICLFQRREED 383
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
+K +E G F R+ V D+
Sbjct: 384 LLKQVEHKAGITFK---RVGVPSATDV 407
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 161 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 220
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 221 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 280
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 281 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 340
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 341 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 400
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 401 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGD 460
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 461 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEY 520
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 521 QLAQVEQKAGIKFKRI 536
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/390 (42%), Positives = 228/390 (58%), Gaps = 16/390 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +S + L RG+ LFP+Q +P G+D+I +ARTGTGKT +F IP+ +K
Sbjct: 197 FSNFPLSPSTINLLKARGVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 256
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR+P LVL PTRELA QV K+F L C YGGTP Q L
Sbjct: 257 LQSVSQDEKRGRSPKVLVLVPTRELAIQVAKDFKNLTRKLSVACFYGGTPYKAQFDLLKN 316
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--------ER 272
G+D +VGTPGR+ D I+ + L+LS V+ VVLDE D ML +GFAE VE IL E
Sbjct: 317 GIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSEN 376
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKP 331
P Q+++FSAT P W+ + KY+K VDL+G Q+ A + +I ++
Sbjct: 377 SP---QTLLFSATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRA 433
Query: 332 SIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
++G +I ++ G+ IVF +TK++A+ LA A + LHGDI Q QRE TL FR
Sbjct: 434 EVLGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQSLHGDIPQKQREVTLKGFR 493
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+G F +LIAT+VAARGLD+P VDL+I P ++++HR+GRTGRAG+ G I Y +
Sbjct: 494 NGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICFYQRK 553
Query: 451 QARQVKSIERDVGCRFTQLPRIAVEGGGDM 480
+ +K +E+ G F RI V D+
Sbjct: 554 EEDLLKQVEQKAGITFR---RIGVPSATDI 580
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEY 549
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 550 QLAQVEQKAGIKFKRI 565
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 230/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ +GRD++ +ARTGTGKT +F IP+ +K
Sbjct: 184 FSNFPISEQTIRLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ RG P LVL PTRELA QV K+F + +L C YGGTP + Q+ +
Sbjct: 244 LQRKREEQKRGYPPKVLVLTPTRELANQVAKDFKDITRTLTVACFYGGTPYNGQIDLIRK 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L+++ VVLDE DQML +GFAEDVE I+
Sbjct: 304 GIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISGAYNRESED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K VDL+G QK A + +I ++ ++I
Sbjct: 364 NPQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCRENQRAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK+DA +A + LHGDI+QSQRE TL FR+G
Sbjct: 424 GDVIQVYSGNQGRAIVFCETKKDATEMALNSNIKQEAQALHGDIAQSQREITLKGFRNGV 483
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I + ++
Sbjct: 484 FKVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFFQPRERC 543
Query: 454 QVKSIERDVGCRFTQL 469
Q++ +E+ G F +
Sbjct: 544 QLRYVEQKSGITFKHV 559
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 230/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 205 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 264
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ RGR P LVL PTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 265 LLAELHDRKRGRAPQVLVLTPTRELANQVSRDFSDITKKLSVACFYGGTPYGGQIERIRN 324
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 325 GIDILVGTPGRIKDHLQNGKLELTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 384
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K VDL+G QK A + +I ++ ++I
Sbjct: 385 NPQTLLFSATCPHWVYNVAKKYMKPTYEQVDLIGKRTQKAAITVEHLAIKCHWTQRAAVI 444
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 445 GDVIRVYSGFHGRTIIFCETKKEAQELSQNTSMKQDAQSLHGDIPQKQREITLKGFRNGD 504
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +++AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 505 FGVMVATNVAARGLDIPEVDLVIQCSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEY 564
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 565 QLAQVEQKAGIKFKRI 580
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/358 (43%), Positives = 232/358 (64%), Gaps = 6/358 (1%)
Query: 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
+G +KLF IQ P ++G+D++G+ARTG GKTL+F +PI++ ++K ++GRGR P
Sbjct: 17 KGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELLLK-EGRNGRGRAPRA 75
Query: 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI 236
L +APTRELA QV KEF + PSL + CVYGG P Q A+ G+D ++GTPGR+ D +
Sbjct: 76 LCMAPTRELAHQVGKEFADIGPSLASTCVYGGAPYMPQESAIRRGLDVIIGTPGRLKDHL 135
Query: 237 KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-LPQN---RQSMMFSATMPPWIRS 292
+ L L+++++++LDEAD+ML GF E ++ I + + Q+ Q ++FSATMP +I S
Sbjct: 136 DKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPDFILS 195
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFT 351
Y+ N +TVD VG S + + G+ +I E+ ++I ++ ++ G+ I+FT
Sbjct: 196 TVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRTIIFT 255
Query: 352 QTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
QTK+DA+ LA + LHGDI Q QRE +L AFRDG+ L+ATDVAARGLD+P
Sbjct: 256 QTKKDANELALETDLRQEVQVLHGDIPQKQREMSLQAFRDGKVRCLVATDVAARGLDIPE 315
Query: 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
VDL++ E P E+++HR+GRTGRAG+ G+ I Y Q ++ +ER G F ++
Sbjct: 316 VDLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKPNQEDAMRYVERRAGISFRRI 373
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/411 (40%), Positives = 249/411 (60%), Gaps = 15/411 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S+ + + L +GI LF IQ L P ++G+D++GRARTG GKTLAF +PI+
Sbjct: 3 LALDNFKLSEPVKSLLRAKGIEALFDIQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPIV 62
Query: 159 DKIIKFNEKHGR---GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISH 213
+++ G+ GR P +VLAPTRELAKQV E++ A SL T+C+YGGT
Sbjct: 63 ERLAGGQGAGGKRAFGRAPSVVVLAPTRELAKQVAADFEYYAKAFSLTTVCLYGGTQYGP 122
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER- 272
Q L GVD V+GTPGRV D ++R L L++++F VLDE D+ML++GF EDVE IL
Sbjct: 123 QEGMLRRGVDVVIGTPGRVKDHLERGTLKLNQLRFRVLDECDEMLNMGFVEDVEKILNAG 182
Query: 273 -LPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W++ +T ++LK T VDLVG K + + + ++
Sbjct: 183 VDAATVQTLLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMKASTSVRHLLLPCHWSQR 242
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
I+ L+ + G+ I+FT+TK DA+ L+ +A+S+ LHGDI Q QRE TL+ FR
Sbjct: 243 SQIVPDLVKCYGVCGRTIIFTETKNDANELSGTLAESFGARALHGDIPQGQREVTLAGFR 302
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G+F++L+ATDVAARGLD+ V+L+I E P ET++HR+GRTGRAG+ G + + +
Sbjct: 303 SGKFSVLVATDVAARGLDISGVELVIQLEPPKDPETYIHRSGRTGRAGQTGICLTLVDRR 362
Query: 451 QARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADT 501
+ + I+ G +F ++ G +DM +G ++ Q D
Sbjct: 363 KEGLIPYIQTKAGLKFERV-------GAPQPSDMAQLAGERALEAVQAVDV 406
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 235/377 (62%), Gaps = 18/377 (4%)
Query: 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK--- 167
V L GI+ LFPIQ A M+G+D+I RARTGTGKTL+F +P+ +++++ E+
Sbjct: 3 VEKLKAGGITSLFPIQSATFNHVMEGKDLIARARTGTGKTLSFILPVHEQMLRLKEEGEL 62
Query: 168 --HGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
GR P CL+L+PTRELAKQ+ K +A + VYGG + Q +AL GVD
Sbjct: 63 DTRKYGRTPSCLILSPTRELAKQIAKVLEMVAADGFSVLTVYGGVAYAEQGQALRKGVDW 122
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--------ERLPQN 276
VVGTPGRVID ++R L L+ V++ VLDEAD+ML++GF + V+ I E P++
Sbjct: 123 VVGTPGRVIDFMERGQLKLNNVRYFVLDEADEMLNIGFKDAVDKIFKGVMGEEAESKPEH 182
Query: 277 RQSMMFSATMPPWIRSLTNKYL--KNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSI 333
Q+++FSAT+P WI T KY N VDLV G Q+ A I I +
Sbjct: 183 VQTLLFSATIPDWIAQTTEKYFDKNNTAHVDLVSGQQGQETATRIEHLCIPCPWNSRART 242
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG ++ +A GK I+FT+TK++A+ LA A +C LHGDI+Q+QRE T AFRDG
Sbjct: 243 IGDIVLCYAGSHGKTIIFTETKKEANELALDDAIKQDCAVLHGDIAQAQRETTFQAFRDG 302
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F L+ATDVAARGLD+P VDL+I ++T+VHR+GRTGRAG+ G A+ +T ++
Sbjct: 303 KFRCLVATDVAARGLDIPEVDLVIMCHPTKDADTYVHRSGRTGRAGRSGVAVTFFTPREM 362
Query: 453 RQVKSIERDVGCRFTQL 469
Q+++IE + + Q+
Sbjct: 363 HQLRAIEWRIKTKMRQI 379
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 239/376 (63%), Gaps = 8/376 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++ L GI++LFP+Q+ P QG+D++ R++TGTGKTLA+ +P+++K
Sbjct: 83 VDNLPIREETKERLKASGITRLFPVQQKCWNPIWQGKDVVVRSQTGTGKTLAYVLPLIEK 142
Query: 161 --IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ F R +P +VLAPTRELA+QV +EF + +L C+YGG P Q L
Sbjct: 143 ASLGHFKAHTKRTGSPFIVVLAPTRELARQVFEEFGKLETTLLGACIYGGAPYRPQEEQL 202
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ +VGTPGRV D+ ++N L+L VQ +VLDEAD+ML +GFA ++E IL + N+Q
Sbjct: 203 RNCLSFLVGTPGRVADMCRKNLLHLELVQCIVLDEADRMLEIGFASELEQILSAVSGNKQ 262
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVG-DSDQKLADGISLYSIATSMYEKPSIIGQL 337
+++FSAT+P W++ + K ++NP +DLVG D D K+ + Y+I + K ++IG +
Sbjct: 263 TLLFSATLPTWVKQQSAKNMRNPAFLDLVGEDKDAKIPKDVKHYAIEVPPFAKEAVIGDI 322
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
++ G KCI+FT TKR+AD L + +HGDI Q RE ++ FR G+F L
Sbjct: 323 LSVFG-GEKCIIFTPTKREADMLGSSEYIRDESTVIHGDIPQDGRELAINGFRKGKFRNL 381
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTS----ETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
IATDVAARG+D+PNVD ++ P + + +VHR+GRTGRAG KG ++LIY+ +
Sbjct: 382 IATDVAARGIDIPNVDFVLMTYTPTPTPESIDMYVHRSGRTGRAGNKGKSMLIYSQAEKD 441
Query: 454 QVKSIERDVGCRFTQL 469
++ +ER +G RF +L
Sbjct: 442 KLLRLERALGIRFERL 457
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 117 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 177 LQGELQDRKRGRAPRVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 237 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 296
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+++ VDL+G QK A + +I ++ ++I
Sbjct: 297 NPQTLLFSATCPHWVYNVAKKYMRSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 356
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 357 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGD 416
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 417 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEY 476
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 477 QLAQVEQKAGIKFKRI 492
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 239/388 (61%), Gaps = 10/388 (2%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V DD S + D + I++ L ++G++ LFPIQ G+D++ +ARTGT
Sbjct: 79 VDIDDQSPEALGDFNNFRITEQTKVLLKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGT 138
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
GKTL+F IP+++K+I N GR P LV+APTRELA QV K+F + + L ++C+YG
Sbjct: 139 GKTLSFAIPLVEKLI-MNRCKDYGRPPKVLVMAPTRELAIQVRKDFQDISQGLSSVCIYG 197
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
GTP Q R++ GVD VVGTPGR++D +++ L L V+ VVLDE DQML +GFA VE
Sbjct: 198 GTPYFQQERSMRGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVE 257
Query: 268 VIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT--VDLVGDSDQKLADGISL 320
IL E Q+++FSAT PPW+R+ + KY++ T VD +G S + A +
Sbjct: 258 EILGYAYTEEREGPPQTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEH 317
Query: 321 YSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDIS 378
+I ++ IG ++ ++ + G+ ++FT TK+DA+ L A + + LHGDI
Sbjct: 318 LAIRCQYSDRAECIGNVVQMYSGQHGRAMIFTDTKKDANELVVCEALQQQKAQVLHGDIE 377
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
Q QRE TL A+RDG L+AT+VAARGLD+P +DL+I P+ ++++HR+GRTGRAG
Sbjct: 378 QRQREITLKAYRDGTVRCLVATNVAARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAG 437
Query: 439 KKGSAILIYTDQQARQVKSIERDVGCRF 466
+ G + Y ++ +K +ER G +F
Sbjct: 438 RTGVCVCFYKPREDMMIKKVERVAGIKF 465
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 164/375 (43%), Positives = 239/375 (63%), Gaps = 12/375 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF- 164
++ + L ++G LF IQ LE A+ GRD++GRARTG GKTLAF +PI++ + K
Sbjct: 88 LTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIELMAKMS 147
Query: 165 ----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
N + +GR P+C+VLAPTRELAKQV +F S ++CVYGG P Q L
Sbjct: 148 PMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYREQEMGL 207
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD V+GTPGR+ D ++R L +++++F VLDEAD+ML++GF +DVE IL + + Q
Sbjct: 208 RSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETIL-KSSGDVQ 266
Query: 279 SMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
+++FSAT+P W++ ++ ++LK N TVDLVGD QK + + + ++ ++ +
Sbjct: 267 TLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRVDLVCDV 326
Query: 338 ITEHAKGG-KCIVFTQTKRDADRLAHAMAKSY--NCEPLHGDISQSQRERTLSAFRDGRF 394
I A GG + IVF TKRD L + K + LHGD+SQSQRE LS FR+ +F
Sbjct: 327 IRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLFREDKF 386
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+ATDVAARGLD+ V+L+I E P +ET++HR+GRTGRAG G ++ + T +
Sbjct: 387 QVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPRNEWA 446
Query: 455 VKSIERDVGCRFTQL 469
V +IER G +F ++
Sbjct: 447 VPNIERKGGFKFIRI 461
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP++ K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEY 549
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 550 QLAQVEQKAGIKFKRI 565
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 237/378 (62%), Gaps = 13/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISK IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 107 ISKYRISESLREKLKSKGIQSLFPIQAMTFDDILDGSDLVGRARTGQGKTLAFVLPILES 166
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQ 214
I K + K G GR P LVL PTRELA QV +F SL + C+YGG Q
Sbjct: 167 ITNGHAKESRKTGYGRPPSVLVLLPTRELASQVFDDFKVYGESLGLTSCCLYGGASYHPQ 226
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+L GVD VVGTPGRV D I+R +NLS ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 227 EMSLKRGVDIVVGTPGRVKDHIERGNINLSYLKFRVLDEADEMLRMGFVEDVELILGKVE 286
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ +++++LK + T+DLVG+ K + + + S P
Sbjct: 287 DVSKVQTLLFSATLPEWVKQISSRFLKASKKTIDLVGNEKMKASTNVRHIILPCSASAIP 346
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+ + A+ LA + + LHG+I QSQRE TLS FR
Sbjct: 347 QVIPDIIRCYSSGGRTIIFTEKRESANELAGLL---HGARALHGEIQQSQREVTLSGFRS 403
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y D +
Sbjct: 404 GKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPR 462
Query: 452 ARQVKSIERDVGCRFTQL 469
+ IER+ G +F +
Sbjct: 463 RSNISKIERESGVKFEHI 480
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 236/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 123 LTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 182
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 183 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 242
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 243 EMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 302
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 303 DATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 362
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + + LHGD++Q+QRE L+ FR
Sbjct: 363 QVIPDIIRCYSHGGRTIIFTETKDSASELSGLI---HGSRALHGDVAQAQREVILAGFRS 419
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y +
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 479
Query: 452 ARQVKSIERDVGCRFTQL 469
V +ER+ G +F +
Sbjct: 480 KHSVSRLERESGVKFEHI 497
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 173/390 (44%), Positives = 243/390 (62%), Gaps = 13/390 (3%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
Y DS EG ++ +ISQ VA L RGI LFPIQ+ P +G+D+IGR TG+G
Sbjct: 422 VYGDSQ--EGQFVNYPEISQKSVAILKERGIKYLFPIQQECFYPIYEGKDLIGRDLTGSG 479
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICV 205
KTLAF +P+L+++ K +K G R +VLAPTRELA QV+ F + D T+ V
Sbjct: 480 KTLAFVLPLLERLRK-TKKLG-TRKIQAIVLAPTRELAVQVQNVFAQMKHFDDEYRTLTV 537
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG PI Q AL GVD VGT GRV+D I+R ++ S ++ V LDEAD ML +GF ED
Sbjct: 538 YGGVPIDPQTSALTRGVDIFVGTTGRVLDHIERGNIDFSGIKSVFLDEADVMLKLGFKED 597
Query: 266 VEVIL----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISL 320
V+ IL ++ ++ Q +FSAT+PPW+R + ++L+ T VDL D K A +
Sbjct: 598 VDKILSIIRDQCREDIQICLFSATIPPWVRDIAQEHLRQGYTMVDLAKDLKNKTAKRVRH 657
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQ 379
+I Y+ +I L+ + GG+ IVFT+TK DA+ L + S N + +HGDI Q
Sbjct: 658 IAINCPFYKTEQVILDLLMMYGTGGRSIVFTKTKSDANSLISSDRFSKNDIQVMHGDIPQ 717
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
RE TL AF++GR +L+ATDVA+RGLD+PNV+LI+ E P ET++HR GRT RAGK
Sbjct: 718 HSREMTLRAFKEGRLKVLVATDVASRGLDIPNVELIVQTEPPQDPETYIHRAGRTARAGK 777
Query: 440 KGSAILIYTDQQARQVKSIERDVGCRFTQL 469
+G+ I++Y ++ ++ IE+ G +F Q+
Sbjct: 778 EGTCIVLYQNKTQYMMEQIEQRAGIQFEQM 807
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 230/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S I + V RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSHFKIYNNTVNLFTGRGVTFLFPIQARTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGELQDRKRGRSPQVLVLAPTRELANQVSKDFSDITKKLAVACFYGGTPYGGQIERMRN 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEDILSVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K VDL+G QK A + +I ++ ++I
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKPTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTAIKQDAQSLHGDIPQKQREITLKGFRNGA 483
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 484 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 543
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 544 QLVQVEQKAGIKFKRI 559
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 239/384 (62%), Gaps = 8/384 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
K EG S D+S+ V L RG++ LFP+Q + +G+D+I +ARTGTGKT +
Sbjct: 43 EEKKEGA-FSNFDLSKATVDLLKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFS 101
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
F IP+++K+ + +++ RGR P LVLAPTRELA QV ++F + L C YGGT +
Sbjct: 102 FAIPLIEKLQRDSQERKRGRTPKVLVLAPTRELAMQVARDFKDVTRKLTVACFYGGTAYN 161
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ + G+D +VGTPGR+ D ++ L +S ++ VVLDE DQML +GFA+ VE IL+
Sbjct: 162 GQLDLIRNGIDILVGTPGRIKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQVEDILKY 221
Query: 273 LPQ-----NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATS 326
+ N Q+++FSAT P W+ + KY+K+ +DL+G +K A + +I
Sbjct: 222 AYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEHLAIECH 281
Query: 327 MYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
++ ++IG ++ ++ G+ I+F +TK++A LA + + + LHGDI Q QRE T
Sbjct: 282 WSQRAAVIGDVLQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGDIPQKQREVT 341
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L FR+G F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I
Sbjct: 342 LKGFRNGAFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGMCIC 401
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
Y ++ Q+K +E+ G F ++
Sbjct: 402 FYQRKEDYQLKQVEQKAGITFKRV 425
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 226/376 (60%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +SQ+ + L R + LFP+Q +P G+D+I +ARTGTGKT +F IP+ +K
Sbjct: 39 FSNFPLSQNTINLLKARDVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 98
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR+P LVL PTRELA QV ++F L C YGG P Q L
Sbjct: 99 LQSVSQDERRGRSPKVLVLVPTRELAIQVARDFKNLTRKLSVACFYGGAPYKAQFDLLKS 158
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ + L+LS V+ VVLDE D ML +GFAE VE IL +
Sbjct: 159 GIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSEN 218
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G Q+ A + +I ++ ++
Sbjct: 219 NPQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRVEVL 278
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ LA A + LHGDI Q QRE TL FR+G
Sbjct: 279 GDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQSLHGDIPQKQREITLKGFRNGV 338
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +LIAT+VAARGLD+P VDL+I P ++++HR+GRTGRAG+ G I Y ++
Sbjct: 339 FEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRAGICICFYQRKEED 398
Query: 454 QVKSIERDVGCRFTQL 469
+K +E+ G F ++
Sbjct: 399 LLKQVEQKAGITFRRI 414
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/387 (44%), Positives = 242/387 (62%), Gaps = 13/387 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+ KD+ IS IS+ + L +GI LFPIQ + + G D++GRARTG GKTL
Sbjct: 111 EEKKDDPNAISNFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTL 170
Query: 152 AFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICV 205
AF +PIL+ +I K K G GR P LVL PTRELA QV +F + A L + C+
Sbjct: 171 AFVLPILESLINGPAKSARKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCL 230
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG P Q L GVD V+GTPGRV D I++ ++LS+++F VLDEAD+ML +GF ED
Sbjct: 231 YGGAPYQGQELKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVED 290
Query: 266 VEVILERLPQ-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYS 322
VE+IL ++ N+ Q+++FSAT+P W++ + K+LK + T DLVG++ K + +
Sbjct: 291 VEMILGKVENVNKVQTLLFSATLPDWVKQIALKFLKPDKKTADLVGNTKMKASTNVRHIV 350
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQR 382
+ + + +I +I ++ GG+ IVFT+TK A +LA + + LHGDI QS R
Sbjct: 351 LPCTSSARAQLIPDIIRCYSSGGRTIVFTETKECASQLAGILN---GAKALHGDIQQSTR 407
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
E TLS FR G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G
Sbjct: 408 EVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 467
Query: 443 AILIYTDQQARQVKSIERDVGCRFTQL 469
A+++Y D + + IER+ G +F +
Sbjct: 468 AVMLY-DPKRSNIPRIERESGVKFEHV 493
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/385 (42%), Positives = 242/385 (62%), Gaps = 13/385 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+D D +S IS + L +GI LFPIQ + + G D++GRARTG GKT
Sbjct: 88 EDVEVDNPNAVSNFRISAPLREKLKAKGIEALFPIQATTFDMVLDGADLVGRARTGQGKT 147
Query: 151 LAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTIC 204
LAF +PIL+ ++ K K G R P LVL PTRELAKQV +F SL + C
Sbjct: 148 LAFVLPILESLVNGPAKNKRKMGYARAPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCC 207
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG + Q L GVD VVGTPGR+ D I+R ++LS +QF VLDEAD+ML +GF E
Sbjct: 208 IYGGDSYTAQENKLRRGVDIVVGTPGRIKDHIERQNIDLSHLQFRVLDEADEMLRMGFVE 267
Query: 265 DVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLY 321
DVE+IL ++ P Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 268 DVELILGKVEDPTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
+I + +I +I+ ++ GG+ I+F + K + L+ +A S LHG+I Q+Q
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAEKKNEVSELSGLLAGS---RALHGEIPQAQ 384
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RE TL+ FR+G+F+ L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G
Sbjct: 385 REVTLAGFRNGKFSTLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
Query: 442 SAILIYTDQQARQVKSIERDVGCRF 466
A+ +Y +++ V IE++ G +F
Sbjct: 445 VAVTLYESRKS-SVSRIEKEAGIKF 468
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 172/447 (38%), Positives = 266/447 (59%), Gaps = 23/447 (5%)
Query: 65 ISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAAL 114
++ P DF S + ++Q D A + DS+ D + L + + I+ A+
Sbjct: 11 VNEPEDFNKSESQDNSQGVTKDTRAANTSEDTGAESQDSANDNSQGFAHLGLPEKILEAV 70
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174
A+ G +K PIQ+ + M+GRD++G A+TGTGKT AF +P+L +I + R+P
Sbjct: 71 AKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI------DTKARHP 124
Query: 175 LCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
LVLAPTRELA QV F A SL + + +YGG Q+ L G +VGTPGR
Sbjct: 125 QALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPGR 184
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
VID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP IR
Sbjct: 185 VIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALFSATMPNAIR 244
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L+ +YL NP V + S+++ D I+ + K +++ E IVF
Sbjct: 245 RLSKQYLDNPAEVTV--KSERRTNDNITQRFLLIPHRAKMDAFTRIL-EVINYDAIIVFC 301
Query: 352 QTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TK + + +A + + ++ ++GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV
Sbjct: 302 RTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVE 361
Query: 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470
+ ++++++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIER R ++
Sbjct: 362 RITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARLEEMD 421
Query: 471 RIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
+V+ + + +S SM ++Q
Sbjct: 422 LPSVDEVNEKRKEKFAQSITNSMDNKQ 448
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 235/378 (62%), Gaps = 13/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 121 LSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILES 180
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I + + K G GR P LVL PTRELA QV +F + A L + C+YGG P Q
Sbjct: 181 LINGPNRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQ 240
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD VVGTPGR+ D I+R ++ S ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 241 EIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGKVE 300
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ +++++LK L T DLVG+ K + + + S +
Sbjct: 301 DVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARS 360
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A LA + LHGDI QSQRE TLS FR
Sbjct: 361 QVIPDVIRCYSSGGRTIIFTETKDSASELAGLLP---GARALHGDIQQSQREVTLSGFRS 417
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ D +
Sbjct: 418 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLF-DPR 476
Query: 452 ARQVKSIERDVGCRFTQL 469
+ IER+ G +F +
Sbjct: 477 RSNISKIERESGVKFEHV 494
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 238/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 106 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 165
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 166 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 225
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 285
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 286 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 345
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 346 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 402
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ +
Sbjct: 403 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 462
Query: 452 ARQVKSIERDVGCRFTQL 469
V IER+ G +F +
Sbjct: 463 KFNVNRIERESGVKFEHI 480
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/393 (44%), Positives = 247/393 (62%), Gaps = 18/393 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+SKL IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 131 VSKLRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 190
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I K + K G GR P LVL PTRELA +V +F + A L + C+YGG P + Q
Sbjct: 191 LINGPTKSSRKTGYGRTPSVLVLLPTRELACRVHADFEVYGGAMGLSSCCLYGGAPYNTQ 250
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD V+GTPGRV D I+R ++LS+++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 251 EIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVE 310
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
N+ Q+++FSAT+P W++ + ++LK + T DLVG++ K + + + S +
Sbjct: 311 NVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARS 370
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A +LA + LHGDI Q+QRE TL FR
Sbjct: 371 QLIPDIIRCYSSGGRTIIFTETKESASQLAGLLP---GARALHGDIQQAQREVTLFGFRS 427
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F L+AT+VAARGLD+ +V LII E P E+++HR+GRTGRAG G A +Y D +
Sbjct: 428 GKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAGTLY-DPK 486
Query: 452 ARQVKSIERDVGCRFTQL--PR---IAVEGGGD 479
+ IER+ G +F + PR IA GG+
Sbjct: 487 RSNISKIERESGVKFEHISAPRPDDIAKAVGGE 519
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 230/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEATVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q +
Sbjct: 250 LHGELQDKKRGRPPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQFERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNAKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I + ++I
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTHRATVI 429
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGYHGRTIIFCETKKEAQELSQNASIKQDAQSLHGDIPQKQREITLKGFRNGA 489
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQYKEEY 549
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 550 QLAQVEQKAGIKFKRI 565
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/447 (38%), Positives = 266/447 (59%), Gaps = 23/447 (5%)
Query: 65 ISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAAL 114
++ P DF S + ++Q D A + DS+ D + L + + I+ A+
Sbjct: 11 VNEPEDFNKSESQDNSQGVTKDTRAANTSEDTGAESQDSANDNSQGFAHLGLPEKILEAV 70
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174
A+ G +K PIQ+ + M+GRD++G A+TGTGKT AF +P+L +I + R+P
Sbjct: 71 AKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI------DTKARHP 124
Query: 175 LCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
LVLAPTRELA QV F A SL + + +YGG Q+ L G +VGTPGR
Sbjct: 125 QALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPGR 184
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
VID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP IR
Sbjct: 185 VIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALFSATMPNAIR 244
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L+ +YL NP V + S+++ D I+ + K +++ E IVF
Sbjct: 245 RLSKQYLDNPAEVTV--KSERRTNDNITQRFLLIPHRAKMDAFTRIL-EVINYDAIIVFC 301
Query: 352 QTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TK + + +A + + ++ ++GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV
Sbjct: 302 RTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVE 361
Query: 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470
+ ++++++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIER R ++
Sbjct: 362 RITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARLEEMD 421
Query: 471 RIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
+V+ + + +S SM ++Q
Sbjct: 422 LPSVDEVNEKRKEKFAQSITNSMDNKQ 448
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 238/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 356
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 357 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 413
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ +
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 473
Query: 452 ARQVKSIERDVGCRFTQL 469
V IER+ G +F +
Sbjct: 474 KFNVNRIERESGVKFEHI 491
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 238/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 106 LANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 165
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 166 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 225
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 285
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 286 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 345
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 346 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 402
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ +
Sbjct: 403 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 462
Query: 452 ARQVKSIERDVGCRFTQL 469
V IER+ G +F +
Sbjct: 463 KFNVNRIERESGVKFEHI 480
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/380 (45%), Positives = 237/380 (62%), Gaps = 17/380 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 109 LSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVES 168
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + G GR P LVL PTRELA QV +F + A L VYGG P Q
Sbjct: 169 LVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQ 228
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++
Sbjct: 229 ISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVD 288
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISL--YSIATSMYE 329
Q+++FSAT+P W++ ++ ++LK+ TVDLV SDQK+ IS+ I S
Sbjct: 289 HVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLV--SDQKMKASISVRHIVIPCSASA 346
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
+P +I +I + GG+ I+FT+TK A +LA + PLHGDI Q+QRE TL F
Sbjct: 347 RPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGF 403
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y D
Sbjct: 404 RTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLY-D 462
Query: 450 QQARQVKSIERDVGCRFTQL 469
+ V IER+ G +F L
Sbjct: 463 PKRSSVTKIERESGVKFEHL 482
>gi|449667535|ref|XP_002167654.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 685
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 240/379 (63%), Gaps = 14/379 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D+++ +IS+ + L GI FP+Q +G D+I +ARTGTGKTLAF +P+++
Sbjct: 57 DLNRFEISKSTMTKLNAIGIKAFFPVQSTTYNAIFEGSDVIVQARTGTGKTLAFTLPVIE 116
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRAL 218
++ N RGR PL L LAPTRELA Q+ +E + P+ + C YGG+ Q L
Sbjct: 117 RLNSENLTE-RGRVPLVLALAPTRELAMQIYQEVEKFKPNNVQVSCFYGGSSYEKQEGEL 175
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE------R 272
GVD +VGTPGR+ DLI+R L+L++++ V+LDEAD+M+ +GF +DVE IL+ R
Sbjct: 176 RRGVDFLVGTPGRIADLIQRGVLDLTKLKHVILDEADRMMDMGFQDDVEKILKHSYTSAR 235
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV-DLVGDSDQKLADGISLYSIATSMYEKP 331
P + +F T+PPW++ + KYL + L V DL+G+ K A + I S +E+P
Sbjct: 236 KPP---TFLFFGTVPPWLQQNSKKYLSSNLKVFDLIGEDKNKGATPVQHKVIKCSYWERP 292
Query: 332 SIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+I ++ ++ K GK I+FT TK++A+ L+ + + + LHGDISQSQRE TL FR
Sbjct: 293 LLIKDIMQLYSGKFGKTIIFTTTKQEANELS-VESSIPDSQVLHGDISQSQREITLQGFR 351
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+G+FN LIATDVAARGLD+P VDL+I E PN + ++HR GRTGRAG+ G ++ Y
Sbjct: 352 NGKFNCLIATDVAARGLDIPEVDLVIQTEPPNDIDFYIHRAGRTGRAGRSGVCVVFYKPG 411
Query: 451 QARQVKSIERDVGCRFTQL 469
Q ++ ++E+ G F ++
Sbjct: 412 QESEIAAVEKRTGVTFEKI 430
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 166/373 (44%), Positives = 227/373 (60%), Gaps = 10/373 (2%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
+I Q V L RGI LFPIQ+ P D+I R TG+GKTLAFG+PI++ + K
Sbjct: 160 EIPQRTVDKLKSRGIISLFPIQQQTFYPIYNREDVIARDLTGSGKTLAFGLPIIEYLRK- 218
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYG 221
N+ G+ R ++LAPTRELA QV+ E + +I VYGG PI Q R L YG
Sbjct: 219 NKFLGQ-RKVQAILLAPTRELAIQVQNELSQLKHGDMEFKSITVYGGVPIDDQARDLKYG 277
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----NR 277
VD +VGT GRV D I+R ++ S V+ VLDEAD+ML +GF +D+E I+ ++ + +
Sbjct: 278 VDIIVGTAGRVKDHIERGNIDFSSVKSFVLDEADRMLDLGFKDDIEWIMSQITRQCQFDV 337
Query: 278 QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q +FSAT+P W++++ +YLK N VDL + K A + SI K S +
Sbjct: 338 QKCLFSATIPLWVKNVARQYLKPNYRLVDLAQNLTNKTAKSVQHLSICCPEQNKMSTLAD 397
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
L+ + G+ IVFTQTK DA+ L + E +HGDI Q+QRE TL FRDG+F++
Sbjct: 398 LLICYGGDGRAIVFTQTKVDANALILTDKIKQDIEVMHGDIPQNQREVTLKRFRDGKFSV 457
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVA+RGLD+PNVDL+I E PN ET++HR+GRT RAGK G I YT + ++
Sbjct: 458 LVATDVASRGLDIPNVDLVIQVEPPNEVETYIHRSGRTARAGKMGVCITFYTKKSQYMIQ 517
Query: 457 SIERDVGCRFTQL 469
IE G +F +
Sbjct: 518 QIESQAGIKFKNI 530
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 244/400 (61%), Gaps = 15/400 (3%)
Query: 82 SAVDDYVAYDDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
SA DD SS ++ D ++ IS+ + +L +GI LFPIQ + + G D
Sbjct: 102 SASDDDGEITASSDEDPADPNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGND 161
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--E 192
++GRARTG GKTLAF +PIL+ ++ K R GR P +VL PTRELA QV E
Sbjct: 162 LVGRARTGQGKTLAFVLPILESLVNGAHKASRRTEHGRTPSVIVLLPTRELANQVHADFE 221
Query: 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
F+ + L CVYGG+P Q AL GVD VVGTPGRV D I + LNL ++F VLD
Sbjct: 222 FYGATFGLSACCVYGGSPYRPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKNLKFRVLD 281
Query: 253 EADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGD 309
EAD+ML++GF +DVE+IL ++ Q+++FSAT+P W+ L+ ++LK + TVDLVG+
Sbjct: 282 EADEMLNMGFVDDVELILGKVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGN 341
Query: 310 SDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN 369
K + + ++ + + +I +I ++ GG+ I+FT+TK A L+ + S
Sbjct: 342 EKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGS-- 399
Query: 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
LHGD+ Q+QRE L+ FR G+F +L+AT+VAARGLD+ +V LII E P E ++H
Sbjct: 400 -RALHGDVVQAQREVILAGFRGGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 458
Query: 430 RTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
R+GRTGRAG G A+++Y + V +ER+ G +F +
Sbjct: 459 RSGRTGRAGNTGVAVMLYEPRYKYSVNRLERESGVKFEHI 498
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 241/388 (62%), Gaps = 13/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+D D +SK I + L GI LFPIQ + + + G D++GRARTG GKT
Sbjct: 88 EDVEVDNPNAVSKFRIPAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKT 147
Query: 151 LAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTIC 204
LAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F E SL + C
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDEYGGSLGLSSCC 207
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +GF E
Sbjct: 208 LYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVE 267
Query: 265 DVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLY 321
DVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I QSQ
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIPQSQ 384
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RE TL+ FR+G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G
Sbjct: 385 REVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
Query: 442 SAILIYTDQQARQVKSIERDVGCRFTQL 469
A+ +Y D + V IE++ G +F L
Sbjct: 445 VAVTLY-DSRKSSVSRIEKEAGIKFEHL 471
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 167/378 (44%), Positives = 239/378 (63%), Gaps = 13/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 115 LSNFRISEPLRQKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILES 174
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I K + K G GR P LVL PTRELA QV +F + A L + C+YGG P Q
Sbjct: 175 LINGPTKASRKTGFGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGGAPYQGQ 234
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD V+GTPGRV D I++ ++LS+++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 235 EIKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVE 294
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
N+ Q+++FSAT+P W++ + ++LK + T DLVG++ K + + + + +
Sbjct: 295 NVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASINVRHIVLPCTSSARA 354
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ IVFT+TK A +LA + + LHGDI QS RE TLS FR
Sbjct: 355 QLIPDIIRCYSSGGRTIVFTETKESASQLAGILT---GAKALHGDIQQSTREVTLSGFRS 411
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y D +
Sbjct: 412 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPK 470
Query: 452 ARQVKSIERDVGCRFTQL 469
+ IER+ G +F +
Sbjct: 471 RSNISRIERESGVKFEHV 488
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 162/374 (43%), Positives = 242/374 (64%), Gaps = 9/374 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ ++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +P
Sbjct: 6 QSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP 65
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I +++ E RGR P LVL PTRELA QV E AP L + VYGGT Q
Sbjct: 66 IAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +
Sbjct: 123 ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++
Sbjct: 183 RQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSD 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ A + +VFT+TK + + +A + + + + LHGD+SQ +RER L AFR G
Sbjct: 239 LLY-VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+P VDL++HY LP+ +E + HR+GRTGRAG+ G +L+Y ++ R V
Sbjct: 298 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDV 357
Query: 456 KSIERDVGCRFTQL 469
+++ER VG RF ++
Sbjct: 358 EALERAVGRRFKRV 371
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 231/364 (63%), Gaps = 12/364 (3%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
L + GI+ LFPIQ + M G ++IGRARTG GKTLAF +P+++K+++ K R
Sbjct: 110 LKKHGIANLFPIQAMTFDKIMDGNNLIGRARTGMGKTLAFALPVVEKLLQSKIKPVPNRA 169
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
P + + PTRELA+QV EF + +L+T+C+YGGTP Q A G D V+GT GR++
Sbjct: 170 PRVICVTPTRELARQVTTEFEKLDTTLNTVCIYGGTPYQQQNAAFRSGTDIVIGTTGRIM 229
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN---RQSMMFSATMPPWI 290
D I R L + +F++LDEAD ML +GF ED++ I + ++ Q ++FSAT+P W+
Sbjct: 230 DHIDRGNLRFANCEFLILDEADTMLEMGFREDIQRIFDATQKSGVKPQILLFSATIPKWL 289
Query: 291 RSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCI 348
+ ++Y+ K V+LV DSD + + + +I +P+++ L+ + K + I
Sbjct: 290 HEIADRYMDKKYEFVNLVQDSDDQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNARTI 349
Query: 349 VFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
+F +TK+D + L+ +C LHGDI+Q+QRE T+ AFRDG+ +LIATDVAARGLD
Sbjct: 350 IFAETKKDCNELSVHPEIKQDCHVLHGDIAQAQRETTMKAFRDGQIRLLIATDVAARGLD 409
Query: 409 VPNVDLIIHYELPNTS------ETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
+ NVDL+I+ E P + +T+VHR+GRTGRAGKKG I +YT +Q + IER +
Sbjct: 410 M-NVDLVINSEPPRKASGYADVDTYVHRSGRTGRAGKKGVCITLYTPRQKELLDLIERKI 468
Query: 463 GCRF 466
G +F
Sbjct: 469 GNKF 472
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 241/388 (62%), Gaps = 13/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+D D +SK IS + L GI LFPIQ + + + G D++GRARTG GKT
Sbjct: 88 EDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKT 147
Query: 151 LAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTIC 204
LAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL + C
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCC 207
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +GF E
Sbjct: 208 LYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVE 267
Query: 265 DVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLY 321
DVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I QSQ
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIPQSQ 384
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RE TL+ FR+G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G
Sbjct: 385 REVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
Query: 442 SAILIYTDQQARQVKSIERDVGCRFTQL 469
A+ +Y D + V IE++ G +F L
Sbjct: 445 VAVTLY-DSRKSSVSRIEKEAGIKFEHL 471
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 247/395 (62%), Gaps = 16/395 (4%)
Query: 82 SAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
S+ DD VA D+ + D+G L +S ++ A+ G +K PIQ+ + M G D
Sbjct: 111 SSQDDVVAQDNEQENKDDDGAGFGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGED 170
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
++G A+TGTGKT AF +PIL ++ + + R P LVLAPTRELA QV + F + A
Sbjct: 171 VVGLAQTGTGKTAAFALPILSRL------NLKSRKPQALVLAPTRELALQVAESFEDFAE 224
Query: 199 SL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255
+ + + +YGG P Q+ L G VVGTPGRVID +++ +L++SE++F+VLDEAD
Sbjct: 225 KMGGVNILPIYGGQPYGAQLSGLRRGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEAD 284
Query: 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ML++GF EDVE ILE P+++Q +FSATMP IR L+ +YL +P V + S Q+ A
Sbjct: 285 EMLNMGFQEDVERILEDTPEDKQVALFSATMPSAIRHLSKRYLNSPQEVTV--KSTQRTA 342
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLH 374
+ I + EK + +++ E I+F +TK D + LA + A+ Y ++
Sbjct: 343 ENIEQDYLIVHHREKLDALTRIL-EVTDFDAMIMFVRTKNDTEELAERLRARGYEAAAIN 401
Query: 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRT 434
GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV + + +Y++P +E++VHR GRT
Sbjct: 402 GDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPRDTESYVHRIGRT 461
Query: 435 GRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
GRAG+ G A+L T ++ R +KSIER R ++
Sbjct: 462 GRAGRSGRAVLFVTPRERRMLKSIERATKSRLNEI 496
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 236/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 120 LANFRISEPLKQKLKSKGINALFPIQATTFGLVLDGHDLVGRARTGQGKTLAFVLPILES 179
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ A L T C YGG+ Q
Sbjct: 180 LVNGPHKATRRTDYGRLPSVLVLLPTRELANQVHADFEFYGGAFGLSTCCAYGGSHYRPQ 239
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 240 EMAMRKGVDIVVGTPGRVKDFIVKGTLNLKSLKFRVLDEADEMLNMGFVDDVELILGKVE 299
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 300 DVTKVQTLLFSATLPEWVKKLSMRFLKADKKTVDLVGNEKMKASSSVKHLALPCNRAARS 359
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
II +I +++GG+ I+FT+TK A L+ + S LHGDI+Q+QRE ++ FR
Sbjct: 360 QIIPDIIKCYSRGGRTIIFTETKESASELSGLIPGS---RALHGDIAQAQREVVIAGFRS 416
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ +
Sbjct: 417 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 476
Query: 452 ARQVKSIERDVGCRFTQL 469
V IER+ G +F +
Sbjct: 477 KYSVTRIERESGVKFEHI 494
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 158/386 (40%), Positives = 235/386 (60%), Gaps = 10/386 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS++ + L RG++ LFPIQ +G+D+I +ARTGTGKT +F IP+++++
Sbjct: 140 SNFPISEETIKLLKGRGVTYLFPIQLKTFGHVYEGKDLIAQARTGTGKTFSFAIPLIERL 199
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+ E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ + G
Sbjct: 200 QRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRNG 259
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-----N 276
+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ + N
Sbjct: 260 IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDN 319
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q+++FSAT P W+ + KY+K+ V LVG QK A + +I ++P++IG
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVALVGKMTQKAATPVEHLAIQCHWSQRPAVIG 379
Query: 336 QLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G F
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSF 439
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+AT+VAARGLD P VDL+I P E+++HR+GRTGRAG+ G I Y ++ Q
Sbjct: 440 KVLVATNVAARGLDNPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQ 499
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGDM 480
++ +E+ G F R+ V D+
Sbjct: 500 LRYVEQKAGITFK---RVGVPSTMDL 522
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 235/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 125 LTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 184
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 185 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 244
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
AL GVD VVGTPGR+ D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 245 EMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 304
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 305 DATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 364
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + S LHGD+ Q+QRE L+ FR
Sbjct: 365 QLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGS---RALHGDVVQAQREVILAGFRS 421
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y +
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 481
Query: 452 ARQVKSIERDVGCRFTQL 469
V +ER+ G +F +
Sbjct: 482 KYSVSRLERESGVKFEHI 499
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/374 (43%), Positives = 242/374 (64%), Gaps = 9/374 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ ++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +P
Sbjct: 6 QSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP 65
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I +++ E RGR P LVL PTRELA QV E AP L + VYGGT Q
Sbjct: 66 IAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +
Sbjct: 123 ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++
Sbjct: 183 RQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSD 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ A + +VFT+TK + + +A + + + + LHGD+SQ +RER L AFR G
Sbjct: 239 LLY-VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVR 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+P VDL++HY LP+ +E + HR+GRTGRAG+ G +L+Y ++ R V
Sbjct: 298 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDV 357
Query: 456 KSIERDVGCRFTQL 469
+++ER VG RF ++
Sbjct: 358 EALERAVGRRFKRV 371
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 235/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 125 LTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 184
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 185 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 244
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 245 EMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 304
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 305 DATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 364
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + S LHGD+ Q+QRE L+ FR
Sbjct: 365 QLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGS---RALHGDVVQAQREVILAGFRS 421
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y +
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 481
Query: 452 ARQVKSIERDVGCRFTQL 469
V +ER+ G +F +
Sbjct: 482 KYSVSRLERESGVKFEHI 499
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/372 (43%), Positives = 241/372 (64%), Gaps = 9/372 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVLAPTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLAPTRELALQVASELSSVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPFRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++ L+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLL 233
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A + +VFT+TK + + +A + + + + +HGD+SQ +RER L AFR G +L
Sbjct: 234 Y-VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVL 292
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLD+P VDL++HY LP+ +E + HR+GRTGRAG+ G +L+Y ++ R V++
Sbjct: 293 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEA 352
Query: 458 IERDVGCRFTQL 469
+ER VG RF ++
Sbjct: 353 LERAVGRRFKRV 364
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 237/379 (62%), Gaps = 15/379 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 108 LANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 167
Query: 161 IIKFNEKHGR-----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISH 213
++ N KH GR P LVL PTRELAKQV EF+ + L + CVYGG+
Sbjct: 168 LV--NGKHKASGADYGRPPSVLVLLPTRELAKQVHTDFEFYGATFGLSSCCVYGGSEYRP 225
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q + GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 QEMKIRKGVDIVVGTPGRVKDFVQKGTLNFKSLKFRVLDEADEMLNMGFVDDVELILGKV 285
Query: 274 PQ--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W+ L+ ++LK TVDLVGD K + + ++ + +
Sbjct: 286 EDVTKVQTLLFSATLPDWVGKLSLRFLKPGKKTVDLVGDEKLKASASVRHLALPCNRAAR 345
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 346 AQVIPDIIRCYSRGGRTIIFTETKESASELSGLIAGS---RALHGDVAQAQREVILAGFR 402
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ +
Sbjct: 403 SGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPR 462
Query: 451 QARQVKSIERDVGCRFTQL 469
V IER+ G +F +
Sbjct: 463 HKFNVNRIERESGVKFEHI 481
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/372 (43%), Positives = 241/372 (64%), Gaps = 9/372 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVL PTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++ L+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLL 233
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A + +VFT+TK + + +A + + + + LHGD+SQ +RER L AFR G +L
Sbjct: 234 Y-VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVL 292
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLD+P VDL++HY LP+ +E + HR+GRTGRAG+ G +L+Y ++ R V++
Sbjct: 293 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEA 352
Query: 458 IERDVGCRFTQL 469
+ER VG RF ++
Sbjct: 353 LERAVGRRFKRV 364
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/364 (42%), Positives = 221/364 (60%), Gaps = 9/364 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + AL +G S IQ A L A+ G D++G ARTGTGKTLAFG+PI +++
Sbjct: 5 LPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANRL-- 62
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ RGR P L+L PTRELA QV E AP + + VYGGT Q L G D
Sbjct: 63 -EPESARGRAPRALILTPTRELALQVAGELEWLAPEHNVVTVYGGTGYGKQASDLKRGAD 121
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR +D K+ L LS V+ VLDEAD+ML+ GF EDVE++L PQ RQ+++FS
Sbjct: 122 IVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQERQTLLFS 181
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT+P W SL ++L++PL ++ D + +I + + ++ ++ H
Sbjct: 182 ATLPRWAESLAARHLRDPLRANVTSDESVSYDE----VAIEAPLASRLGVLSDVLHVHGT 237
Query: 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G IVFT+TK + D LA A+ + E +HGD++Q QRER L FR + +L+ATDV
Sbjct: 238 GA-SIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVATDV 296
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLD+P VDL++HY P E + HR+GRTGRAG+ G+ +L+Y+ ++ R++ +ER +
Sbjct: 297 AARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALLERAI 356
Query: 463 GCRF 466
R
Sbjct: 357 ARRI 360
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/394 (40%), Positives = 237/394 (60%), Gaps = 8/394 (2%)
Query: 83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
A D+ + + + EG S IS++ + L RG++ LFPIQ G+D+I +
Sbjct: 157 AADEPQQHLTAEQKEGA-FSNFSISKETIQLLKARGVTYLFPIQAKTFGHVSSGKDVIAQ 215
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202
ARTGTGKT +F IP+++K+ + + RGR P LVL PTRELA QV ++F + L
Sbjct: 216 ARTGTGKTFSFAIPLIEKLQRDLKDQKRGRLPKVLVLTPTRELAIQVGRDFSDITKKLTV 275
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
C YGGT + Q+ + G+D +VGTPGR+ D I+ LNL+ +Q VVLDE DQML +GF
Sbjct: 276 ACFYGGTAYNGQINHIRNGIDILVGTPGRIRDHIQSGRLNLTSLQHVVLDEVDQMLDMGF 335
Query: 263 AEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLAD 316
AE VE IL + N Q+++FSAT P W+ + KY+K VDL+G QK A
Sbjct: 336 AEQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKVKYEQVDLIGKKTQKTAM 395
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
+ +I ++ ++IG +I ++ G+ IVF +TK++A L+ + A + + LHG
Sbjct: 396 TVEHLAIKCHWAQRAAVIGTVIQVYSGTHGRTIVFCRTKKEATELSLSPAIKQDAQSLHG 455
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
DI Q QRE TL FR G F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTG
Sbjct: 456 DIPQKQREITLKGFRSGAFGVLVATNVAARGLDIPEVDLVVQSSPPEDVESYIHRSGRTG 515
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
RAG+ G + Y ++ Q+ +E+ G F ++
Sbjct: 516 RAGRTGICVCFYQAKEEYQLSQVEQKAGITFKRI 549
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 168/388 (43%), Positives = 240/388 (61%), Gaps = 13/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+D D +SK IS + L GI LFPIQ + + + G D++GRARTG GKT
Sbjct: 88 EDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKT 147
Query: 151 LAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTIC 204
LAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL + C
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCC 207
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG I Q L GVD VVGTPGR+ D I+R L+ S +F VLDEAD+ML +GF E
Sbjct: 208 LYGGDSIPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYFKFRVLDEADEMLRMGFVE 267
Query: 265 DVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLY 321
DVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I QSQ
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIPQSQ 384
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RE TL+ FR+G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G
Sbjct: 385 REVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
Query: 442 SAILIYTDQQARQVKSIERDVGCRFTQL 469
+ +Y D + V IE++ G +F L
Sbjct: 445 VPVTLY-DSRKSSVSRIEKEAGIKFEHL 471
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/387 (41%), Positives = 243/387 (62%), Gaps = 15/387 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S +DEG L IS++++AA+ + G +K PIQ + M GRD++G A+TGTGKT
Sbjct: 92 ESGEDEGPGFESLGISEEMLAAVKKAGFTKPSPIQAETIPLLMAGRDVVGLAQTGTGKTA 151
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF +P+L K+ + R P LVLAPTRELA QV F E A L+ + VYGG
Sbjct: 152 AFALPVLSKV------DLKARTPQALVLAPTRELAAQVADSFQEFAGDLKGLEVLPVYGG 205
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGR+ID +KR +L++SE++++VLDEAD+ML++GF EDVE
Sbjct: 206 QSYGFQLSGLRRGAQIIVGTPGRIIDHLKRGSLDISELKYLVLDEADEMLNMGFQEDVER 265
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+ +Q +FSATMP IR ++ +YL NP V + + +K I+ I
Sbjct: 266 ILEDTPEAKQVALFSATMPAGIRKISQQYLTNPAEVTV--KTREKTNTNITQRWIFVPHR 323
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
+K + +++ G IVF +TK + + +A A+ A ++ ++GDI+Q+QRERT+
Sbjct: 324 DKLQALVRILEVTDVDG-MIVFVRTKSETEEVADALRAAGFSAAAINGDIAQAQRERTVE 382
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+ GR +IL+ATDVAARGLDV + ++++++P +E++VHR GRTGRAG+ G AIL
Sbjct: 383 QLKSGRLDILVATDVAARGLDVERISHVVNFDIPREAESYVHRIGRTGRAGRSGEAILFV 442
Query: 448 TDQQARQVKSIERDVGCRFT--QLPRI 472
T ++ R +++IER T +LP +
Sbjct: 443 TPKEKRMLRTIERATKATLTEDELPTV 469
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 245/408 (60%), Gaps = 30/408 (7%)
Query: 87 YVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTG 146
+V ++ +D ISK IS+ + L +GI LFPIQ + +QG D++GRARTG
Sbjct: 32 FVVMENKVEDPN-GISKFKISEPLREKLKEKGIESLFPIQAMTFDIILQGCDLVGRARTG 90
Query: 147 TGKTLAFGIPILDKII---------KFNEKHGRGRN-----------PLCLVLAPTRELA 186
GKTLAF +PIL+ + K E +G R P LVL PTRELA
Sbjct: 91 QGKTLAFVLPILESVTNGKAKETNAKTKETNGNARESRKGGYGGPPKPSVLVLLPTRELA 150
Query: 187 KQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLS 244
QV +F + A L + C+YGG P Q L+ GVD V+GTPGR+ D I R +++LS
Sbjct: 151 CQVNADFEVYGGAMGLTSCCLYGGAPYKAQEIKLERGVDIVIGTPGRIKDHIVRGSIDLS 210
Query: 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLK-NP 301
+++F VLDEAD+ML +GF EDVE+IL ++ Q+++FSAT+P W++++ ++LK +
Sbjct: 211 QLKFRVLDEADEMLRMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDK 270
Query: 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361
T DLVG++ K + + Y + + + +I +I ++ G+ I+FT+TK A +LA
Sbjct: 271 QTADLVGNTKMKASTSVRHYILPCTGAARSQLIPDIIRCYSSEGRTIIFTETKESASQLA 330
Query: 362 HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421
+ LHGDI Q+QRE TLS FR G+F L+AT+VAARGLD+ +V LII E P
Sbjct: 331 ELLP---GARALHGDIQQAQREVTLSGFRYGKFMTLVATNVAARGLDINDVQLIIQCEPP 387
Query: 422 NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
E ++HR+GRTGRAG G A+++Y D + + IER+ G +F +
Sbjct: 388 RDVEAYIHRSGRTGRAGNTGVAVMLY-DPRRSNIPKIERESGVKFEHI 434
>gi|118489724|gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 481
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 137/219 (62%), Positives = 174/219 (79%)
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
MLS GF EDVEVILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+
Sbjct: 1 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 60
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGD 376
GI LY+++ + K +I+ L+T +AKGGK I+FTQTKRDAD ++ A+ + E LHGD
Sbjct: 61 GIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGD 120
Query: 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGR 436
ISQ QRERTL+ FR G+F +L+ATDVA+RGLD+PNVDLIIHYELPN +ETFVHR+GRTGR
Sbjct: 121 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGR 180
Query: 437 AGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
AGK+G+AIL++T Q R V+S+ERD GC+F + A+E
Sbjct: 181 AGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIE 219
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 227/357 (63%), Gaps = 10/357 (2%)
Query: 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181
LFPIQ + M+G D IGRARTGTGKT AF IP+++ + K RG P LV+ P
Sbjct: 140 LFPIQAQTFDIIMEGVDCIGRARTGTGKTFAFAIPVVEMLNKKPAPTARG-APRVLVMLP 198
Query: 182 TRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
RELA QV F A +L +CVYGG PI Q+ AL GVD VVGTPGR++D+IKRN
Sbjct: 199 VRELAIQVAGNFKSLASRNLAVVCVYGGEPIYTQISALRRGVDVVVGTPGRIMDMIKRNE 258
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILER------LPQNRQSMMFSATMPPWIRSLT 294
L+LS+++ VVLDE D+ML +GFAE+V+ IL+ + N Q+++FSATMP W++ +
Sbjct: 259 LDLSKLEHVVLDEVDRMLDMGFAENVDEILQTRYNENDVESNPQTLLFSATMPDWVQKTS 318
Query: 295 NKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQ 352
KY+K N +DLVG + + + ++ + ++ + +G ++ ++ G+ +VF +
Sbjct: 319 QKYMKKNTRNIDLVGRERVRTSITVQHLALQCNYQDRAATVGDVLRVYSGSQGRAMVFCE 378
Query: 353 TKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
TKRDAD LA + LHGDI Q +R+ L FR+GR+ LI TDVAARGLD+P V
Sbjct: 379 TKRDADDLAVSPCIGIETHVLHGDIPQEKRQLVLQKFREGRYKCLITTDVAARGLDIPEV 438
Query: 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
DL++ P ++++HR+GRTGRAG++G+ +L Y +V+ +ER G +F ++
Sbjct: 439 DLVVQCCPPKDVDSYIHRSGRTGRAGRQGTCVLFYKYGSEYEVQRVERTAGFKFRRV 495
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 241/372 (64%), Gaps = 9/372 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVLAPTRELA QV E A L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLAPTRELALQVASELASVATHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++ L+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLL 233
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A + +VFT+TK + + +A + + + + +HGD+SQ +RER L AFR G +L
Sbjct: 234 Y-VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVL 292
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLD+P VDL++HY LP+ +E + HR+GRTGRAG+ G +L+Y ++ R V++
Sbjct: 293 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEA 352
Query: 458 IERDVGCRFTQL 469
+ER VG RF ++
Sbjct: 353 LERAVGRRFKRV 364
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 245/402 (60%), Gaps = 25/402 (6%)
Query: 92 DSSKDEGL-DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D ++ E L + + IS + + L +GI++LFPIQ + G+D+IGRA TG GKT
Sbjct: 7 DMAESESLYAMHRYRISPETIGILHSKGITELFPIQALSFDAIYDGKDLIGRAPTGQGKT 66
Query: 151 LAFGIPILDKIIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
LAF +PI++KI K N + R R PLCLVL+PTRELA+Q++++ APSL T+C++GG
Sbjct: 67 LAFALPIVEKIYKLNLRPPRRSRAPLCLVLSPTRELAQQIDEQIRMIAPSLRTVCLFGGA 126
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P Q AL GV+ VVGTPGRV+D ++R L L E+Q+ +LDEAD+ML +GF+EDVE +
Sbjct: 127 PFDPQEFALRRGVEFVVGTPGRVLDHLERGTLQLGELQWFILDEADRMLDMGFSEDVEKV 186
Query: 270 LER-------------LPQNRQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLA 315
++ +P Q ++FSAT+P W+R + KY+ + +TVDLV + ++
Sbjct: 187 VDYAIKSGGETKGPRIVPDRIQVLLFSATIPSWVREVMTKYMHPDKVTVDLVTEKEKASV 246
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLH 374
D + + + +I LI + G+ IVF K+ + LA LH
Sbjct: 247 D-VRHLVLRCPWEARAKVIADLIEVYCGVDGRAIVFCDMKKSCNELAGEECLRSIAGVLH 305
Query: 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTS------ETFV 428
GDI Q RE+TL F+DG+F L+ATDVAARGLD+ + L+I+ E P T ET++
Sbjct: 306 GDIPQKTREQTLKDFKDGKFRCLVATDVAARGLDIQGITLVINREPPATRSGVADVETYI 365
Query: 429 HRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVGCRFTQL 469
HR+GRTGRAG+KG I + T Q ++SIE+ VG FT++
Sbjct: 366 HRSGRTGRAGRKGVCITLSTGFAQEAVLQSIEKAVGNAFTRI 407
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 157/403 (38%), Positives = 237/403 (58%), Gaps = 34/403 (8%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 218 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 277
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM----- 215
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+
Sbjct: 278 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQIERMRN 337
Query: 216 ----------RALDY------------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
R D+ G+D +VGTPGR+ D ++ L+L++++ VVLDE
Sbjct: 338 GIDILVGTPGRIKDHLXYGGQLERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 397
Query: 254 ADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLV 307
DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+ VDL+
Sbjct: 398 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 457
Query: 308 GDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAK 366
G QK A + +I ++ ++IG +I ++ G+ I+F +TK++A L+ +
Sbjct: 458 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNASI 517
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSET 426
+ + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDL++ P E+
Sbjct: 518 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 577
Query: 427 FVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
++HR+GRTGRAG+ G I Y ++ Q+ +E+ G +F ++
Sbjct: 578 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRI 620
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/416 (41%), Positives = 250/416 (60%), Gaps = 23/416 (5%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +I AL GI FPIQ+ L ++G D+IG+ARTGTGKTLAFGIP+L +I
Sbjct: 30 ELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQRI- 88
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDY 220
+HG G+ P LVLAPTRELA QV + + L T + VYGG Q++AL
Sbjct: 89 ----EHG-GKAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRD 143
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR++DL ++ L+LS++Q +VLDEAD+ML +GF D+E I+E +P RQ+M
Sbjct: 144 GVDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTM 203
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I +L+ +YL P V ++ + ++ + T +KP ++ +L+
Sbjct: 204 LFSATMPGEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQA 263
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G +VF QTKR DR+A + + + +HGD+ Q QRER L AFR G+ ++L+A
Sbjct: 264 NGR-GLTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGKVDVLVA 322
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV +V +I+YE P+++ET VHR GRTGRAG++G+A+ + + K I
Sbjct: 323 TDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLVDWSDLPRWKLIN 382
Query: 460 RDVGCRFTQLPR-------------IAVEGGGDMYNDMGGRSGYGSMRDRQYADTG 502
+ F + P I E G + + GR+G + +TG
Sbjct: 383 NALQLPFGEPPETYSTSDHLYEALDIPREATGTLPKERRGRAGLEAEELEDIGETG 438
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 173/450 (38%), Positives = 266/450 (59%), Gaps = 29/450 (6%)
Query: 65 ISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAAL 114
++ P DF S + ++Q D A + DS+ D L + I+ A+
Sbjct: 11 VNEPEDFNKSESQDNSQGVNQDTRAANTSEGTGAESKDSANDNSQGFEHLGLPDKILQAV 70
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174
A+ G + PIQ + M+GRD++G A+TGTGKT AF +P+L ++ + R+P
Sbjct: 71 AKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQL------DPQARHP 124
Query: 175 LCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
LVLAPTRELA QV F A +L + + +YGG Q+ L G +VGTPGR
Sbjct: 125 QALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRRGAQVIVGTPGR 184
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
VID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP IR
Sbjct: 185 VIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVALFSATMPNAIR 244
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGIS---LYSIATSMYEKPSIIGQLITEHAKGGKCI 348
L+ +YL NP V + S+++ D I L + + + I ++IT A I
Sbjct: 245 RLSKQYLHNPAEVTV--KSERRTNDNIKQRFLLIPHRAKMDAFTRILEVITYDA----II 298
Query: 349 VFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407
VF +TK + + +A A+ + Y+ ++GDI+Q+QRERT+ +DGR +IL+ATDVAARGL
Sbjct: 299 VFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGL 358
Query: 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467
DV + ++++++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIER R
Sbjct: 359 DVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNARLE 418
Query: 468 QLPRIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
++ +V+ + + ++ SM ++Q
Sbjct: 419 EMDLPSVDEVNEKRKEKFAQAITQSMDNKQ 448
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 231/378 (61%), Gaps = 8/378 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ ++
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFSIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 EGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY+K +DLVG QK A + +I + +K ++
Sbjct: 360 ENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAV 419
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+G ++ ++ GK I+F +K +A LA + + + +PLHGD+ Q +RE L FR
Sbjct: 420 LGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQ 479
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G F +L+AT+VAARGLD+P VDL++ Y P ++ +VHR+GRTGRAG+ G I +Y ++
Sbjct: 480 GSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPRE 539
Query: 452 ARQVKSIERDVGCRFTQL 469
++++ER G F ++
Sbjct: 540 RHYLRNVERSTGITFKRV 557
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 221/358 (61%), Gaps = 10/358 (2%)
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189
+P G D+I +ARTGTGKT +F IP+++K+ + RGR P LVL PTRELA QV
Sbjct: 185 FDPVYDGEDVIAQARTGTGKTFSFAIPLVEKLQGDSAAPARGRAPKVLVLTPTRELAIQV 244
Query: 190 EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
K+F + L +C YGGT Q+ A+ G+D +VGTPGR+ D ++ + L+LS+++ V
Sbjct: 245 AKDFKDIIKKLSIVCFYGGTSYMPQIEAIRNGIDILVGTPGRIKDHLQNHKLDLSKLKHV 304
Query: 250 VLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT- 303
VLDE DQML +GFAE VE IL + N Q+++FSAT PPW+ + KY++
Sbjct: 305 VLDEVDQMLDMGFAEQVEEILALSYKKDADTNPQTLLFSATCPPWVYDVAKKYMRPSCKH 364
Query: 304 VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAH 362
VDL+G QK A + +IA ++ ++IG +I ++ G+ IVF +TK++A+ LA
Sbjct: 365 VDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKEANELAL 424
Query: 363 AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN 422
+ N + LHGDI Q QRE TL FR G F +L+AT+VAARGLD+P VDL++ P
Sbjct: 425 NASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLVVQCSPPK 484
Query: 423 TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDM 480
E+++HR+GRTGRAG+ G I Y ++ Q++ +E G F R+ V D+
Sbjct: 485 DVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVENKAGITFR---RVGVPTANDI 539
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 231/378 (61%), Gaps = 7/378 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S + A L +GI LF IQ L + G D++GRARTG GKTLAF +PI+
Sbjct: 104 LAVDNFRLSDKVKALLREKGIEALFSIQAHTLNHLLDGFDLVGRARTGQGKTLAFVLPIV 163
Query: 159 DKIIKFN---EKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
++++ N + +GR P +VLAPTRELAKQV +F A +L T+C+YGG P+S
Sbjct: 164 ERLLAHNISATRRQQGRTPRVIVLAPTRELAKQVHADFENIGRAANLSTVCLYGGAPMSP 223
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q + L G D VVGTPGRV D ++R L L ++ F VLDE D+ML++GF EDVE IL
Sbjct: 224 QEQILRRGCDVVVGTPGRVKDHLERGNLKLQDLMFRVLDECDEMLNMGFVEDVEKILNAG 283
Query: 274 PQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ Q+++FSAT+P W++ +T ++L+ N VDLVG K + + + ++
Sbjct: 284 GDIKVQTLLFSATLPSWVKDITRRFLQPNHKLVDLVGTDKMKASTSVKHMVLPCHWSQRA 343
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
++ L+ + G+ I+F TK+D + L ++ + +PLHGDI Q QRE TL AFR
Sbjct: 344 TVAADLVRCYGALGRTIIFCDTKKDCNELVASLGEGMRAQPLHGDIPQQQREVTLKAFRA 403
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
+F+IL+ATDVAARGLD+ V+L+I E P ET++HR+GRTGRA G ++ + ++
Sbjct: 404 AKFDILVATDVAARGLDINGVELVIQIEPPKDPETYIHRSGRTGRASSTGVSVTLVDRKK 463
Query: 452 ARQVKSIERDVGCRFTQL 469
+ I + G F ++
Sbjct: 464 EGLIPFIAKRAGVTFERI 481
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 231/378 (61%), Gaps = 8/378 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ ++
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFSIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 EGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY+K +DLVG QK A + +I + +K ++
Sbjct: 360 ENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAV 419
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+G ++ ++ GK I+F +K +A LA + + + +PLHGD+ Q +RE L FR
Sbjct: 420 LGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQ 479
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G F +L+AT+VAARGLD+P VDL++ Y P ++ +VHR+GRTGRAG+ G I +Y ++
Sbjct: 480 GSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPRE 539
Query: 452 ARQVKSIERDVGCRFTQL 469
++++ER G F ++
Sbjct: 540 RHYLRNVERSTGITFKRV 557
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 236/373 (63%), Gaps = 22/373 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S ++AAL G + P+Q + + GRD I +A TGTGKT AF +PIL +
Sbjct: 15 AALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQGL 74
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
+ + G P LVL PTRELA QV + H LD + +YGG PI Q+RAL
Sbjct: 75 VPY------GHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALR 128
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+ VD +VGTPGR++D ++R L L +V+ V+LDEAD+ML +GF EDVE ILE +P+ RQ+
Sbjct: 129 HPVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQT 188
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSII 334
+FSAT+PP IR LT +YL+ P+T+ + + +++ SIA ++YE K +
Sbjct: 189 ALFSATIPPRIRQLTQRYLRAPVTIAIHPER-------VTVPSIAQTVYEVAAHAKLEAL 241
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ I ++ I+F +TK AD LAH + + Y E +HGD+SQ+ R+R + FR G+
Sbjct: 242 SR-ILDYEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQ 300
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
++LIATDVAARGLD+P V +I++++P+ E++VHR GRTGRAG G+AI + ++
Sbjct: 301 VDLLIATDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLIEPRERW 360
Query: 454 QVKSIERDVGCRF 466
+++IER +G R
Sbjct: 361 LLRTIERAIGQRL 373
>gi|380302038|ref|ZP_09851731.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 594
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 238/375 (63%), Gaps = 10/375 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ D+ +DIV AL+ +GI FPIQ L A++GRD+IG+A+TGTGKTL FGIP+L
Sbjct: 47 ADFDVREDIVEALSSKGIIHPFPIQSMTLPVALKGRDIIGQAKTGTGKTLGFGIPLLQST 106
Query: 162 IKFNEKHGRGR---NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+ E + GR P LV+ PTRELA QV ++ +++ + + VYGG Q+
Sbjct: 107 VAPGEDNPTGRVIGKPQALVVLPTRELAVQVAEDLQDASAKRPVRILTVYGGRAYEPQIE 166
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL+ GVD VVGTPGR+IDL+++ L+LS+V+ VLDEAD+ML +GF ED+E +L +P+
Sbjct: 167 ALEKGVDVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLRAVPEK 226
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I +L +++ P + GD + AD I +K ++
Sbjct: 227 RQTMLFSATMPGPILALARRFMTQPTHIRAHDPGDVSRTKAD-IKQVVYRAHQLDKIEVL 285
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ + G IVF +TKR ADR+A + K + PLHGD+ Q RE+ L AFR+G+
Sbjct: 286 ARVLQSRGR-GLTIVFMRTKRQADRVAEDLQKRGFAAAPLHGDLGQGAREQALRAFRNGK 344
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
++L+ATDVAARG+DV +V +I++ P+ +T++HRTGRTGRAGKKG+A+ +
Sbjct: 345 VDVLVATDVAARGIDVDDVTHVINWNSPDDDKTYLHRTGRTGRAGKKGTAVTFVDWEDLA 404
Query: 454 QVKSIERDVGCRFTQ 468
+ I R +G T+
Sbjct: 405 RWALIARQLGLESTE 419
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/384 (39%), Positives = 229/384 (59%), Gaps = 20/384 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G++ LFPIQ G+D++ +ARTGTGKT +FGIP+++
Sbjct: 190 DFSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 249
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 250 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVFAIK 309
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGR+ DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 310 DGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 369
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ VDLVG QK A + +I + +K ++
Sbjct: 370 ENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAV 429
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNC-------EPLHGDISQSQRERT 385
+G ++ ++ GK I+F +K A L S NC +PLHGD+ Q +RE
Sbjct: 430 LGDIVQVYSGSHGKTIIFCDSKLQAHEL------STNCGSLKQSAKPLHGDLQQKEREVV 483
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L FR G F +LIAT+VAARGLD+P VDL++ Y P ++ +VHR+GRTGRAG+ G I
Sbjct: 484 LKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCIS 543
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
+Y + ++++ER G F ++
Sbjct: 544 LYEPWEKHYLRNVERSTGITFKRV 567
>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
Length = 678
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/418 (39%), Positives = 257/418 (61%), Gaps = 22/418 (5%)
Query: 65 ISRPLDFKSSIAWQHAQSAVD---------DYVAYDDSSKDEGLDISKLDISQDIVAALA 115
++ P +F S + + +Q V+ D A D S+ D + L + +++ A+A
Sbjct: 11 VNEPEEFNKSESQEISQGDVETTGAANNPEDTGAEDTSANDNSQGFATLGLPEEVQQAVA 70
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
+ G ++ PIQ+ + M+GRD++G A+TGTGKT AF +P+L ++ R+P
Sbjct: 71 KVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQV------DPEVRHPQ 124
Query: 176 CLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
LVLAPTRELA QV F A L + + +YGG Q+ L G +VGTPGRV
Sbjct: 125 ALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRV 184
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
ID +++ +L++S+++F+VLDEAD+ML++GF EDVE ILE P+ +Q +FSATMP IR
Sbjct: 185 IDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALFSATMPNSIRR 244
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352
L+ +YL +P V + S+++ D I+ + T +K +++ E + IVF +
Sbjct: 245 LSKQYLNDPAEVTV--KSERRTNDNITQRYLLTPHRQKMDAFTRIL-EVIEYDAIIVFCR 301
Query: 353 TKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
TK + + +A ++ + YN ++GDI+Q QRERT+ +DGR +IL+ATDVAARGLDV
Sbjct: 302 TKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAARGLDVDR 361
Query: 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
+ +++Y++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIER R ++
Sbjct: 362 ITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARLEEM 419
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 153/384 (39%), Positives = 228/384 (59%), Gaps = 20/384 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + +G++ LFPIQ G+D++ +ARTGTGKT +FGIP+++
Sbjct: 222 DFSKFPISKDTIKNXQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 281
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 282 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVFAIK 341
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGR+ DL++ L+L+ ++ VVLDE D M VGF+E VE IL
Sbjct: 342 DGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPDPE 401
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ VDLVG QK A + +I + +K ++
Sbjct: 402 ENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAV 461
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNC-------EPLHGDISQSQRERT 385
+G ++ ++ GK I+F +K A L S NC +PLHGD+ Q +RE
Sbjct: 462 LGDIVQVYSGSHGKTIIFCDSKLQAHEL------STNCGSLKQSAKPLHGDLQQKEREVV 515
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L FR G F +LIAT+VAARGLD+P VDL++ Y P ++ +VHR+GRTGRAG+ G I
Sbjct: 516 LKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCIS 575
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
+Y + ++++ER G F ++
Sbjct: 576 LYEPWEKHYLRNVERSTGITFKRV 599
>gi|386774462|ref|ZP_10096840.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 596
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/376 (43%), Positives = 240/376 (63%), Gaps = 12/376 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ D+ DIV ALA +GI+ FPIQ L A++GRD+IG+A+TGTGKTL FGIP+L
Sbjct: 21 ADFDVRADIVKALAAKGITTPFPIQALTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQSS 80
Query: 162 IKFNEKHGRGR---NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+ E + R P LV+ PTRELA QV + ++ + + VYGG Q+
Sbjct: 81 VAPGEPNPDDRPIGKPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQIE 140
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL+ GV+ VVGTPGR+IDL+++ L+LS+V+ VLDEAD+ML +GF ED+E +L+ +P N
Sbjct: 141 ALEKGVEVVVGTPGRLIDLMRQKHLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVPAN 200
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I +L +++K P + GD + AD I +K ++
Sbjct: 201 RQTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKAD-IKQVVYRAHQLDKIEVM 259
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+++ A+G G I+F +TKR ADR+A +A + + PLHGD+ Q RE+ L AFR+G
Sbjct: 260 ARVL--QARGRGLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRNG 317
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ ++L+ATDVAARG+DV +V ++++ P+ +T++HRTGRTGRAGKKG+AI +
Sbjct: 318 KIDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWEDL 377
Query: 453 RQVKSIERDVGCRFTQ 468
+ I R +G T+
Sbjct: 378 ARWALIARQLGLESTE 393
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 164/443 (37%), Positives = 261/443 (58%), Gaps = 37/443 (8%)
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAAL 114
FS + +H I +FK+ + ++ + D+ K++ L S I+Q IV L
Sbjct: 69 FSKKCKNYHKIR---EFKN--VNIQCKEVDEENILQDEEKKNKELFSSIPQINQKIVEFL 123
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF---------- 164
+GI + IQ P +G D+IGR+ TG+GKT+AF +P+++K+ K
Sbjct: 124 ETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTIAFALPLVEKLYKNIESQKKIIKN 183
Query: 165 ---------------NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYG 207
N+ ++P LVL PTREL+KQVE F E + + + + +YG
Sbjct: 184 KSNEINSIQHLSEEGNKNDNMDKDPYILVLEPTRELSKQVETTFKEISQFYNFNIMSIYG 243
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G ++Q L G+ + GTPGR+ID I++ L+L +++VVLDEAD+ML++GF D+E
Sbjct: 244 GESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEADEMLNLGFTHDIE 303
Query: 268 VILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT- 325
IL + ++ Q +++SAT P WI+ +++KYLKNP+ +D++ ++ K + I +I T
Sbjct: 304 RILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTSKTIQHIAIKTP 362
Query: 326 -SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEPLHGDISQSQRE 383
+ EK ++ +I + GG+ I+FT+TK +AD LA + +Y N LHG+I+QS RE
Sbjct: 363 YDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILASEGSFNYLNFSVLHGNIAQSTRE 422
Query: 384 RTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSA 443
T+ FR+G F +LIATD+AARGLD+ NVDLII P ++HR+GRTGRA KKG +
Sbjct: 423 HTMQRFRNGMFQVLIATDIAARGLDISNVDLIIQCYPPTYPAIYIHRSGRTGRANKKGIS 482
Query: 444 ILIYTDQQARQVKSIERDVGCRF 466
I++++++ V IE++ G +F
Sbjct: 483 IVLFSNEDKNDVIKIEKNCGIKF 505
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 156/356 (43%), Positives = 227/356 (63%), Gaps = 10/356 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D ++L +S IVA+LA GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L
Sbjct: 7 DFAELGVSGPIVASLAAAGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66
Query: 160 KIIKFNEK-----HGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPIS 212
++ +E G R P LV+ PTRELAKQV ++ S S+D + +YGG
Sbjct: 67 RVTGKDEPGGETAEGDTRLPQALVVVPTRELAKQVAQDLVTASSQRSIDVVTIYGGKEFE 126
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GVD VVGTPGR++DL R L L++V+ VVLDEAD+ML +GF DVE I+
Sbjct: 127 PQINALKAGVDVVVGTPGRLLDLYGRKVLRLNKVRTVVLDEADEMLDLGFLPDVERIIAA 186
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-DGISLYSIATSMYEKP 331
+P NRQ+M+FSATMP + +L +Y+ P + + D L + Y +K
Sbjct: 187 VPANRQTMLFSATMPGAVITLARRYMNRPTHIRAHDNEDLSLTGKNTTQYVYRAHAMDKS 246
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ +L+ + G+ I+FT+TKR AD+LA ++ + + LHGD+ Q+QRE+ L +FR
Sbjct: 247 ELVARLLQAEGR-GRTIIFTRTKRTADKLAAELSDRGFAVRALHGDLGQAQREKALKSFR 305
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
DG ++L+ATDVAARG+D+ +V +++++ P +T+VHR GRTGRAG G A+ +
Sbjct: 306 DGTVDVLVATDVAARGIDIDDVTHVVNFQSPEDEKTYVHRIGRTGRAGNSGVAVTL 361
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 230/371 (61%), Gaps = 9/371 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ VDLII +P +VHR GRT RAGK+G+ I ++T ++ Q++ I
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLI 431
Query: 459 ERDVGCRFTQL 469
E + F ++
Sbjct: 432 ENRIKIHFQRI 442
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 230/371 (61%), Gaps = 9/371 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFALPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ VDLII +P +VHR GRT RAGK+G+ I ++T ++ Q++ I
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLI 431
Query: 459 ERDVGCRFTQL 469
E + F ++
Sbjct: 432 ESRIKIHFQRI 442
>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length = 669
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 161/389 (41%), Positives = 243/389 (62%), Gaps = 13/389 (3%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
+D A + S+ D + L + D+ A+++ G +K PIQ+ + M+GRD++G A+
Sbjct: 49 EDTGAEETSANDNSQGFAHLGLPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQ 108
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---D 201
TGTGKT AF +P+L +I R P LVLAPTRELA QV F A L +
Sbjct: 109 TGTGKTAAFALPVLSQI------DTEARYPQALVLAPTRELALQVADSFQSFADHLGRIE 162
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++G
Sbjct: 163 VLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMG 222
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F EDVE ILE P+++Q +FSATMP IR L+ +YL NP V + S+++ D I+
Sbjct: 223 FQEDVERILEDTPEDKQVALFSATMPNSIRRLSKQYLNNPAEVTV--KSERRTNDNITQR 280
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQS 380
+ T K +++ E IVF +TK + +A ++ ++ YN ++GDI+Q
Sbjct: 281 FLLTPHRHKMDAFTRIL-EVIDYDAIIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQ 339
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK 440
QRERT+ +DGR +IL+ATDVAARGLDV + +++Y++PN +E++VHR GRTGRAG+
Sbjct: 340 QRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRT 399
Query: 441 GSAILIYTDQQARQVKSIERDVGCRFTQL 469
G AIL T ++ R ++SIER R ++
Sbjct: 400 GEAILFVTPRERRMLRSIERVTNARLEEM 428
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 230/378 (60%), Gaps = 8/378 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK +S++ + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
K+ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 240 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFAIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ +DL+G QK A + +I + +K ++
Sbjct: 360 ENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAV 419
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+G L+ ++ GK I+F +K +A LA + + + + LHGD+ Q +RE L FR
Sbjct: 420 LGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQ 479
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G F +LIAT+VAARGLD+P VDL++ Y P ++ +VHR+GRTGRAG+ G I +Y +
Sbjct: 480 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWE 539
Query: 452 ARQVKSIERDVGCRFTQL 469
++++ER G F ++
Sbjct: 540 RHYLRNVERSTGITFKRV 557
>gi|384440186|ref|YP_005654910.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
gi|359291319|gb|AEV16836.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
Length = 512
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 165/374 (44%), Positives = 242/374 (64%), Gaps = 14/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL+RRGI PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKAEIQEALSRRGIVAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ +E RGR P +VL PTREL QV E AP L + VYGGT Q L
Sbjct: 61 QALEASSE---RGRPPRAIVLTPTRELCLQVASELAAVAPHLKVVAVYGGTGYGKQREEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +K+ L+LS+V+ VLDEAD+MLS+GF E+VE IL+ PQ RQ
Sbjct: 118 ARGADVVVATPGRALDYLKQGVLDLSQVRIAVLDEADEMLSMGFEEEVEAILKATPQERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSIIGQL 337
+++FSAT+P W R L +Y++ P+ +++V + +G++ A + E+ S++ L
Sbjct: 178 TLLFSATLPSWARRLAERYMRAPVVINVVRE------EGVTYREEALLAPSERLSLLSDL 231
Query: 338 ITEHAKGGK-CIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ + K K IVFT+TK + + +A + + + +HGD+SQ+ RER + AFRDG
Sbjct: 232 L--YVKSPKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQADRERVMRAFRDGEVR 289
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+P VDL++H+ LP+ ET+ HR+GRTGRAG+ G +++Y +++ R++
Sbjct: 290 ILVATDVAARGLDIPEVDLVVHFRLPDKPETYQHRSGRTGRAGRGGEVVILYGNREKREL 349
Query: 456 KSIERDVGCRFTQL 469
+ER VG F ++
Sbjct: 350 AELERAVGRTFKRV 363
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 247/400 (61%), Gaps = 37/400 (9%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
+I+ +I L+ +GI+++ IQ P +GRD+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 132 EINPNIAKFLSSKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVEKLYKV 191
Query: 165 NEKHGRG--------------------------RNPLCLVLAPTRELAKQVEKEFHESAP 198
K GR +NP LVL PTREL+KQVE F E +
Sbjct: 192 --KMGRSGEGVSPSTPHLESANHFGGTNQPDDSKNPSILVLEPTRELSKQVENTFKEISQ 249
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
+ + + +YGG +Q L G++ + GTPGR+ID ++R L+L ++++VLDEAD+
Sbjct: 250 FYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLERKNLSLQNIKYLVLDEADE 309
Query: 257 MLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
ML++GF D+E IL + + Q +++SAT P WI+ +++KY+KNP +D+V DS K +
Sbjct: 310 MLNLGFTHDLERILSYINLKEAQILLYSATTPSWIKDISSKYMKNPFFIDVV-DSSNKTS 368
Query: 316 DGISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEP 372
I +I T + EK ++ +I + GG+ I+FT+TK +AD L + KS +
Sbjct: 369 KNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFAV 428
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTG 432
LHG+I+Q+ RE T+ FR G F ILIATD+AARGLD+ NVDL+I PN +E ++HR G
Sbjct: 429 LHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHRAG 488
Query: 433 RTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT--QLP 470
RTGRA KKG ++++++ + + + IE++ G +F+ QLP
Sbjct: 489 RTGRANKKGISVVLFSTEDKQDLVKIEKNCGIKFSIEQLP 528
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 230/378 (60%), Gaps = 8/378 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK +S++ + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 148 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 207
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
K+ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 208 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFAIK 267
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 268 DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPE 327
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ +DL+G QK A + +I + +K ++
Sbjct: 328 ENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAV 387
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+G L+ ++ GK I+F +K +A LA + + + + LHGD+ Q +RE L FR
Sbjct: 388 LGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQ 447
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G F +LIAT+VAARGLD+P VDL++ Y P ++ +VHR+GRTGRAG+ G I +Y +
Sbjct: 448 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWE 507
Query: 452 ARQVKSIERDVGCRFTQL 469
++++ER G F ++
Sbjct: 508 RHYLRNVERSTGITFKRV 525
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 231/378 (61%), Gaps = 12/378 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +++AAL +G + IQ + A++GRD++G+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFALRPEVLAALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIA 60
Query: 159 DKI-IKFN-----EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
K+ F RGR P +L PTRELA QV E AP L + +YGGT
Sbjct: 61 HKLEAPFRGDSRVASRQRGRPPRAFILTPTRELALQVAGELAWVAPHLHVLPIYGGTGYG 120
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q L G D VV TPGR ID + + L+LS V+ VLDEAD+MLS+GF EDVE +L
Sbjct: 121 SQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLLGA 180
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P +RQ+ +FSAT+P W + L +Y+++P+ V++V D + ++ + + +
Sbjct: 181 TPASRQTFLFSATVPSWAKRLAERYMRDPVHVNVVKDEQVSYEE----LALQAPLQTRLN 236
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +I +A + IVFT+TK + D LA + A+ P+HGD+SQ +RER L FR+
Sbjct: 237 TLTDVIFAYAP-ERTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFRE 295
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +L+ATDVAARGLD+P VDL++H+ LP +E + HR+GRTGRAG+ G IL Y ++
Sbjct: 296 GTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGPRE 355
Query: 452 ARQVKSIERDVGCRFTQL 469
R+++++E V RF ++
Sbjct: 356 RRELENLEYAVKRRFKRV 373
>gi|381162701|ref|ZP_09871931.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418460916|ref|ZP_13032000.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359739012|gb|EHK87888.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379254606|gb|EHY88532.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 575
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 238/377 (63%), Gaps = 10/377 (2%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +++ AL+ G + PIQ+A + P + G D++G+A TGTGKT AF +P+L +I
Sbjct: 25 ELGLRPELLTALSDLGYEEPTPIQRAAIPPLLDGADVVGQAATGTGKTAAFSLPVLHRIA 84
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDY 220
+ RG P LVL PTRELA QV + + L + VYGG P+ Q+R+L+
Sbjct: 85 DVEQ---RGVAPSALVLVPTRELAAQVCEAMYRYGHRLGIRVVPVYGGQPMGRQLRSLET 141
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VV TPGR +D + R +L+LS ++ VVLDEAD+ML +GFAED++ ILER P +RQ+M
Sbjct: 142 GVDVVVATPGRALDHLSRGSLDLSTLRMVVLDEADEMLDMGFAEDIDAILERTPDDRQTM 201
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSATMPP I L +YL+ P ++L +S + A ++ + KP+ +G+++
Sbjct: 202 LFSATMPPRIAGLVRRYLREPRRIELSRAESMSEDAASVTQAAYVVPRGHKPAALGRVLD 261
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A +VF +T+ + DRL M A+ Y E LHG + Q+QR+R + R G ++++
Sbjct: 262 IEAPEA-AVVFCRTREEVDRLTETMNARGYRAEALHGGMDQTQRQRVVGRLRAGTADLVV 320
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ + +++Y++P+ E +VHR GR GRAG++GSAI + ++ R +K+I
Sbjct: 321 ATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGREGSAITLAEPREHRMIKTI 380
Query: 459 ERDVG--CRFTQLPRIA 473
ER G +LP +A
Sbjct: 381 ERVTGHTIPVRKLPTVA 397
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 235/396 (59%), Gaps = 14/396 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + ++ SK G S D+S IV AL ++GI+ LFP+Q E ++G D++ +ART
Sbjct: 33 DNIIPNNGSKTVGRPFSDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQART 92
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAFGIPI++K+ K RGR P ++ PTRELA QV + L +
Sbjct: 93 GSGKTLAFGIPIVEKLNKIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISGDLVVAAL 152
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q R L GVD VV TPGR D +++ L V+ LDEAD ML +GF ED
Sbjct: 153 YGGVAYSIQERVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKED 212
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLA 315
+E++L+R+ + N Q+++FSAT+P W+ T ++ KN +D+VG + + A
Sbjct: 213 IELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVH--TCSFISKNKKFIDMVGQGEMRAA 270
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLH 374
+ I + E S++ L+ ++ + G+ ++FT TK+D L+ K + + LH
Sbjct: 271 NTIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK-LDSQCLH 329
Query: 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRT 434
GD+ Q QRE T+ +FR+ F++LIATDVAARGLD+P VDL+I P+ + F+HR GRT
Sbjct: 330 GDMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRT 389
Query: 435 GRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470
GRAG+KG +L++ + V+ IER +F LP
Sbjct: 390 GRAGRKGVCVLLHQPRDEHIVERIERHANIKFEVLP 425
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 230/371 (61%), Gaps = 9/371 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ VDLII +P +VHR GRT RAGK+G+ I ++T ++ Q++ I
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLI 431
Query: 459 ERDVGCRFTQL 469
E + F ++
Sbjct: 432 ESRIKIHFQRI 442
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 230/371 (61%), Gaps = 9/371 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ VDLII +P +VHR GRT RAGK+G+ I ++T ++ Q++ I
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLI 431
Query: 459 ERDVGCRFTQL 469
E + F ++
Sbjct: 432 ESRIKIHFQRI 442
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 235/396 (59%), Gaps = 14/396 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + ++ SK G S D+S IV AL ++GI+ LFP+Q E ++G D++ +ART
Sbjct: 33 DNIIPNNGSKAVGRPFSDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQART 92
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAFGIPI++K+ K RGR P ++ PTRELA QV + L +
Sbjct: 93 GSGKTLAFGIPIVEKLNKIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISGDLVVAAL 152
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q R L GVD VV TPGR D +++ L V+ LDEAD ML +GF ED
Sbjct: 153 YGGVAYSIQERVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKED 212
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLA 315
+E++L+R+ + N Q+++FSAT+P W+ T ++ KN +D+VG + + A
Sbjct: 213 IELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVH--TCSFISKNKKFIDMVGQGEMRAA 270
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLH 374
+ I + E S++ L+ ++ + G+ ++FT TK+D L+ K + + LH
Sbjct: 271 NTIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK-LDSQCLH 329
Query: 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRT 434
GD+ Q QRE T+ +FR+ F++LIATDVAARGLD+P VDL+I P+ + F+HR GRT
Sbjct: 330 GDMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRT 389
Query: 435 GRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470
GRAG+KG +L++ + V+ IER +F LP
Sbjct: 390 GRAGRKGVCVLLHQPRDEHIVERIERHANIKFEVLP 425
>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 582
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 247/403 (61%), Gaps = 16/403 (3%)
Query: 79 HAQSAVDDYVAYDDSS----KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM 134
H + AV A + SS E + D+ DIV ALA +GI+ FPIQ L A+
Sbjct: 7 HTEEAVSASPAVEQSSGAAAPVEERTFADFDVRTDIVEALAAKGITTPFPIQSLTLPVAL 66
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLAPTRELAKQVEK 191
+GRD+IG+A+TGTGKTL FGIP+L + E + R P LV+ PTRELA QV
Sbjct: 67 RGRDIIGQAKTGTGKTLGFGIPLLQNSVAPGEPNPADRPIGTPQALVVLPTRELAVQVAH 126
Query: 192 EFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+ ++ + + VYGG Q+ AL+ GV+ VVGTPGR+IDL+++ L+LS+V+
Sbjct: 127 DLETASAKRPIRILTVYGGRAYEPQIEALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTA 186
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL--V 307
VLDEAD+ML +GF ED+E +L+ +P RQ+M+FSATMP I +L +++K P +
Sbjct: 187 VLDEADEMLDLGFLEDIEKLLQAVPVKRQTMLFSATMPGPIMALARRFMKQPTHIRAHDP 246
Query: 308 GDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA- 365
GD + AD I +K ++ +++ A+G G I+F +TKR ADR+A +A
Sbjct: 247 GDESRTKAD-IKQVVYRAHQLDKIEVMARIL--QARGRGLSIIFMRTKRQADRVAGDLAD 303
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425
+ + PLHGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV +V ++++ P+ +
Sbjct: 304 RGFAAAPLHGDLGQGAREQALRAFRSGKIDVLVATDVAARGIDVTDVTHVVNWNCPDDDK 363
Query: 426 TFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468
T++HRTGRTGRAGKKG+AI + + I R +G T+
Sbjct: 364 TYLHRTGRTGRAGKKGTAITFVDWEDLARWALIARQLGLESTE 406
>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
Length = 627
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 156/394 (39%), Positives = 233/394 (59%), Gaps = 20/394 (5%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++ K EG D+S +S D+ L RG+ LFPIQ G+D+I +A+TGTGKT
Sbjct: 37 NEVEKVEG-DLSNFPLSSDLQKKLQARGVKALFPIQIKTFHHIHTGKDVIAQAKTGTGKT 95
Query: 151 LAFGIPILDKIIKFNEKHG-----RGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTIC 204
AF +P+L K+ E G GR P +V+APTREL Q+ +F + +L +
Sbjct: 96 FAFALPVLTKL----ENSGIDGLKSGRKPKVIVMAPTRELVSQIASDFESLISKNLKVLS 151
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG Q AL GVD + G PGRV DLI + L+LS++++V+LDE D+ML +GF++
Sbjct: 152 IYGGVSYEKQTTALKNGVDIIAGAPGRVRDLINKGHLDLSKIEYVILDEVDRMLDMGFSD 211
Query: 265 DVEVIL------ERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADG 317
VE IL E + Q+++FSATMP WI ++ KYLK + + V L+ ++ K A
Sbjct: 212 IVEEILSYIYPSETDKKGPQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAAST 271
Query: 318 ISLYSIATSMYEKPSIIGQLITEHAKG--GKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
+ +I E+ I +I H G +CI+F + K+DAD LA A +C LHG
Sbjct: 272 VEHLAIQCPWRERAGTIPDIIRVHGGGNQARCIIFCERKKDADELASHSAMKSDCHVLHG 331
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
D+ Q +RE L FR+G++++L+ T+VAARGLDVP++DL+I P E ++HR+GRTG
Sbjct: 332 DVPQEKRELVLKKFREGKYSVLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYIHRSGRTG 391
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
RAG+KG I Y ++ ++ +E+ G F ++
Sbjct: 392 RAGRKGVCICFYEPKEKYDLQKVEKLAGFTFKRI 425
>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
Length = 722
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/399 (39%), Positives = 247/399 (61%), Gaps = 34/399 (8%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
+I+ +I LA +GI+++ IQ P +GRD+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 133 EINPNIAKFLASKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVEKLYKV 192
Query: 165 --------------------NEKHGRG-----RNPLCLVLAPTRELAKQVEKEFHESAP- 198
N GR +NP LVL PTREL+KQVE F E +
Sbjct: 193 KMGRSGEGVTSSTPHMEKSANAFDGRNQSDDNKNPSILVLEPTRELSKQVENTFKEISQF 252
Query: 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
+ + + +YGG +Q L G++ + GTPGR+ID +++ L+L ++++VLDEAD+M
Sbjct: 253 YNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLEKKNLSLQNIKYLVLDEADEM 312
Query: 258 LSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
L++GF D+E IL + + Q +++SAT P W++ ++++Y+KNP +D+V DS K +
Sbjct: 313 LNLGFTHDLERILSYINLKEAQILLYSATTPSWVKDISSRYMKNPFFIDVV-DSSNKTSK 371
Query: 317 GISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPL 373
I +I T + EK ++ +I + GG+ I+FT+TK +AD L + KS + L
Sbjct: 372 NIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFAVL 431
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HG+I+Q+ RE T+ FR G F ILIATD+AARGLD+ NVDL+I PN +E ++HR GR
Sbjct: 432 HGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHRAGR 491
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT--QLP 470
TGRA KKG ++++++ + + + IE++ G +F+ QLP
Sbjct: 492 TGRANKKGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLP 530
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/387 (42%), Positives = 236/387 (60%), Gaps = 35/387 (9%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 18 EISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKIN 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 78 PKFQAVQA-------LILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E IL+++P + RQ
Sbjct: 131 FGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQ 190
Query: 279 SMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMYE 329
M+FSATMPP I+ L Y+ P LTV L+ + D I + ++
Sbjct: 191 VMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCR---- 246
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R +
Sbjct: 247 --------IIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKK 298
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FRDG+ +L+ATDVAARGLD+ NV +I++++P E++VHR GRTGRAG+KG AI + +
Sbjct: 299 FRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVS 358
Query: 449 DQQARQVKSIERDVGCRFT--QLPRIA 473
++ RQ++ IER + R +LP +A
Sbjct: 359 SREYRQLRLIERLIKTRIVRKELPTLA 385
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 238/376 (63%), Gaps = 14/376 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L L +S+ ++ AL G + PIQ + +QG+D+IG+A+TGTGKT AFG+PI+
Sbjct: 6 LTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
++++ R LVL PTRELA QV +E + + TI +YGG I Q+R
Sbjct: 66 ERLVPGQ------RAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L +GVD V+GTPGR++D + R+ L+LS+V+ VVLDEAD+ML +GF ED+E IL+ P
Sbjct: 120 SLRFGVDVVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAE 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP IR L +Y+++P+T+ + Q I Y K + +
Sbjct: 180 RQTLLFSATMPPEIRRLAGRYMRDPITISVT--PQQLTVPQIDQYFCEVRPSFKTEALTR 237
Query: 337 LI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++ E+ + G C F +TK+ D L A+ A+ Y E +HGD++Q+QR R +S F++G
Sbjct: 238 ILDIENVERGIC--FCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYI 295
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+ATDVAARGLD+ +V + +Y++P E++VHR GRTGRAG+ G+AI + T ++ Q
Sbjct: 296 ELLVATDVAARGLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQ 355
Query: 455 VKSIERDVGCRFTQLP 470
++ IER + R + P
Sbjct: 356 LRLIERVIKARLQRRP 371
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/387 (42%), Positives = 236/387 (60%), Gaps = 35/387 (9%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 11 EISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKVN 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 71 PKFQAVQA-------LILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF ED+E IL+++P + RQ
Sbjct: 124 FGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMYE 329
M+FSATMPP I+ L Y+ P LTV L+ + D I + ++
Sbjct: 184 VMLFSATMPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCR---- 239
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R +
Sbjct: 240 --------IIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKK 291
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FRDG+ +L+ATDVAARGLD+ NV +I++++P E++VHR GRTGRAG+KG AI + +
Sbjct: 292 FRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVS 351
Query: 449 DQQARQVKSIERDVGCRFT--QLPRIA 473
++ RQ++ IER + R +LP +A
Sbjct: 352 SREYRQLRLIERLIKTRIIRKELPTLA 378
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/387 (42%), Positives = 236/387 (60%), Gaps = 35/387 (9%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 18 EISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKIN 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 78 PKFQAVQA-------LILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E IL+++P + RQ
Sbjct: 131 FGSQVVVGTPGRILDHLNRGTLKLQYVKIVVLDEADEMLDMGFVDDIETILKQVPKEERQ 190
Query: 279 SMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMYE 329
M+FSATMPP I+ L Y+ P LTV L+ + D I + ++
Sbjct: 191 VMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCR---- 246
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R +
Sbjct: 247 --------IIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKK 298
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FRDG+ +L+ATDVAARGLD+ NV +I++++P E++VHR GRTGRAG+KG AI + +
Sbjct: 299 FRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVS 358
Query: 449 DQQARQVKSIERDVGCRFT--QLPRIA 473
++ RQ++ IER + R +LP +A
Sbjct: 359 SREYRQLRLIERLIKTRIVRKELPTLA 385
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 236/367 (64%), Gaps = 12/367 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL RRGI+ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ E RGR P LVL PTRELA QV E AP L + VYGGT Q L
Sbjct: 61 QGLEASKE---RGRLPRALVLTPTRELALQVSGELQAVAPHLKVVTVYGGTGYGKQKEEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ AL+LS+V+ VLDEAD+MLS+GF E+VE IL P+ RQ
Sbjct: 118 TRGCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSIIGQL 337
+++FSAT+P W R L +Y+K+P+ +++V + +GI+ A ++ S++ +
Sbjct: 178 TLLFSATLPSWARKLAERYMKSPVVINVVRE------EGITYQEEAIPAPGDRLSLLSDV 231
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A + IVFT+TK + + +A + + + +HGD+SQ+ RER + AFR+G +
Sbjct: 232 LFVKAP-KRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRV 290
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+P VDL++HY P+ ET+ HR+GRTGRAG+ G +++Y ++ R++
Sbjct: 291 LVATDVAARGLDIPEVDLVVHYRFPDKPETYQHRSGRTGRAGRGGEVVILYGPRERRELS 350
Query: 457 SIERDVG 463
+ER VG
Sbjct: 351 ELERAVG 357
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 243/397 (61%), Gaps = 13/397 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D D S +D+ L +S +IS+++ A L +GI+ L+ IQ + + G+D++ RA+T
Sbjct: 114 DEANEDASPEDDPLRVSNFNISREVCARLETKGITSLYGIQAQTFQHVLDGKDIVARAKT 173
Query: 146 GTGKTLAFGIPILDKI-----IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAP 198
G GKTLAF +PI++ I + N + +GR P+ +LAPTRELAKQV +F A
Sbjct: 174 GCGKTLAFVLPIVEAINREHPVPANGRRAQGRAPVVALLAPTRELAKQVHADFQHIGHAF 233
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L ICVYGG P Q R L G D V+GTPGR+ D ++R L+ +++F VLDEAD+ML
Sbjct: 234 KLTAICVYGGAPYGDQQRLLRAGCDIVIGTPGRMKDHLERKTLSFDKLRFRVLDEADEML 293
Query: 259 SVGFAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLA 315
++GF ED+E+IL N Q+++FSAT+P W+ ++ ++L+ + +TVDLVGD QK +
Sbjct: 294 NMGFVEDIEMILNHAKDNEKLQTLLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQKAS 353
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYN--CEP 372
++ + E+ ++ LI G G+ IVF TKRD L A+ K +
Sbjct: 354 AAVTHMLLNCQWSERTELVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKA 413
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTG 432
LHGD++Q+QRE L+ FR +F L+ATDVAARGLD+ V+L++ E P ET++HR+G
Sbjct: 414 LHGDVNQAQREVVLAGFRANKFQTLVATDVAARGLDISGVELVVQCEPPKEPETYIHRSG 473
Query: 433 RTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
RTGR G G + + T + + +IER G +F ++
Sbjct: 474 RTGRGGATGECVTLCTPRNEWAIPNIERKGGFKFQRI 510
>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 461
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 175/470 (37%), Positives = 265/470 (56%), Gaps = 23/470 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L I ++IV L GI + PIQ+ + A+QG+D+I +A+TGTGKT AF +PIL KI K
Sbjct: 8 LGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQKINK 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
N+K + L+LAPTRELA Q+ E + A LD + VYGG + Q+ L G
Sbjct: 68 -NQK-----DVQALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKGG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
+ V+ TPGR++D ++R ++L V +VLDEADQML++GF E+VE I+++ PQNRQ M+
Sbjct: 122 MHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLML 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
+SAT+P IR+LTN+Y+KNP+ + + S++ D I + T+ K + +I +
Sbjct: 182 YSATIPKGIRALTNRYMKNPVEIRI--HSNKVTLDEIKQLVVETTDRHKQEALMHMIKQE 239
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
IVF +TKR L+ A+ K ++C+ LHGD++Q++RE+ + FR+ + IL+AT
Sbjct: 240 -NPFLAIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVAT 298
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARG+DV + + +Y++P E ++HR GRTGRAG KG AI + + IER
Sbjct: 299 DVAARGIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIER 358
Query: 461 DVGCRFTQL---PRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRS 517
+ + ++ P VE + + + +R+ D F + R +G S
Sbjct: 359 GINQKIVKITFKPEGRVESIEETFEREAKKR-----EERKNKDNKFKDNQR--KNGDKNS 411
Query: 518 GGYRSPGSGRYGGNNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRSGG 567
R S RY N + G+ SG +G +G G SR G
Sbjct: 412 AKGRKTESKRYDSNKND-KNDSKGNRSGNYGKGRENAGPNSRKGSSRRGN 460
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 161/386 (41%), Positives = 236/386 (61%), Gaps = 10/386 (2%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+++ + L ++ IV AL GI+ FPIQ+ + A+ G DMIG+ARTGTGKTL
Sbjct: 9 DAAEPAKTTFADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTL 68
Query: 152 AFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TIC 204
AFGIPIL K++ F++ + + P LV++PTRELA+QV + + +
Sbjct: 69 AFGIPILQKVVLKTDEGFDQLDPKDK-PQALVMSPTRELAQQVGSDLAIAGRDRHARVLT 127
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG Q+ AL GVD VVGTPGR++DL+ R L+LS V+ VLDEAD+ML +GF
Sbjct: 128 IYGGVGYDDQLDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLP 187
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
DV+ +L+R P +RQ+MMFSATMP I SL L P+ + G Q + +
Sbjct: 188 DVQALLDRTPASRQTMMFSATMPAVIMSLARSRLNQPVNIRAEGRDAQATVPQTTQFIYQ 247
Query: 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRE 383
+KP +IG+++ K +VFT+TKR A RLA + + + LHGD++QSQRE
Sbjct: 248 AHELDKPEMIGKMLQSEGM-RKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQRE 306
Query: 384 RTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSA 443
+T+ FR+ + +L+ATDVAARG+DV +V +++YE+P+ E +VHR GRTGRAG +G A
Sbjct: 307 KTMKRFRNDKIQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVA 366
Query: 444 ILIYTDQQARQVKSIERDVGCRFTQL 469
+ + Q + K I + + F ++
Sbjct: 367 VTLVDWQDVTRWKVINKALDLPFPEI 392
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 242/396 (61%), Gaps = 13/396 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V + + DE L +S IS+ + L ++GIS LF IQ A + G+D++ RARTGT
Sbjct: 58 VVEETDNSDEKLALSNFRISEGTIENLEKKGISSLFEIQAATFDTIYDGKDVLARARTGT 117
Query: 148 GKTLAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV 205
GKTLAF IP+++++ + N + RGR+P LVL PTR+LAKQV +F + S L T+ V
Sbjct: 118 GKTLAFAIPVVERLALDKNYRERRGRSPRVLVLCPTRDLAKQVCGDFEQVSGNRLKTLPV 177
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAE 264
YGG P + Q GVD VVGTPGR++D IK + L +++F+VLDEAD+ML GF E
Sbjct: 178 YGGVPYNEQTSVFREGVDVVVGTPGRILDHIKFGNMKLHDLKFIVLDEADEMLDARGFEE 237
Query: 265 DVEVILERLPQNR-----QSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGI 318
D+ +L + + + Q+++FSAT+P + ++LK +DL+G++ + I
Sbjct: 238 DMFNLLSSIQEQKETRDYQTLLFSATVPESVMQTIQRFLKEDYERIDLIGNAKNRTNTNI 297
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDI 377
++ +S + + IIG ++ + + G ++F TK DA+ L AH K + LHGDI
Sbjct: 298 RHIAMPSSYHTRADIIGDVVNVYGRSGLTVIFCATKADANELGAHDKIKQ-DAAVLHGDI 356
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437
+Q+ RE T+ AFR+G++ ++ TDV ARGLD+P VDL+I+ + P ET+VHR+GRTGRA
Sbjct: 357 AQASREATMKAFREGKYKCIVCTDVLARGLDIPQVDLVINCQPPKDPETYVHRSGRTGRA 416
Query: 438 GKKGSAILIYTDQQARQVKSIERDVGCRFTQL--PR 471
G+ G + Y + + I + G +F QL PR
Sbjct: 417 GRSGVCVTFYKPAEEGLLSYISKRTGVQFEQLSAPR 452
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 161/373 (43%), Positives = 239/373 (64%), Gaps = 12/373 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL RGI+ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
++ RGR P LVL PTRELA QV E AP L + VYGGT Q L
Sbjct: 61 QRL---EASRQRGRKPRALVLTPTRELALQVASEVAALAPHLKVVPVYGGTGYGKQKEEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ L+LSEV+ VLDEAD+MLS+GF E+VE IL P +RQ
Sbjct: 118 QKGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIGQL 337
+++FSAT+P W R L +Y+K+P+ +++V + +G++ A + ++ +++ L
Sbjct: 178 TLLFSATLPTWARRLAERYMKSPVVINVVKE------EGVTYQEEAILAPTDRLALLSDL 231
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A + IVFT+TK + + +A + + + +HGD+SQ+ RER + AFR+G +
Sbjct: 232 LYVKAP-KRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRV 290
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+P VDL++HY LP+ ET+ HR+GRTGRAG+ G +++Y ++ R++
Sbjct: 291 LVATDVAARGLDIPEVDLVVHYRLPDKPETYQHRSGRTGRAGRGGEVVILYGPREKRELA 350
Query: 457 SIERDVGCRFTQL 469
+ER VG F ++
Sbjct: 351 ELERAVGRPFKRV 363
>gi|423687698|ref|ZP_17662501.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
gi|371493481|gb|EHN69084.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
Length = 636
Score = 295 bits (754), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 228/365 (62%), Gaps = 13/365 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMR 216
KI + + NP +++APTRELA QV E + L + +YGG I QMR
Sbjct: 67 KI------NLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL++P VD+ G + D + EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTN--HTVDKVEQNFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QSQRERT+ ++G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRML 357
Query: 456 KSIER 460
++IER
Sbjct: 358 RTIER 362
>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
Length = 640
Score = 295 bits (754), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 228/365 (62%), Gaps = 13/365 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMR 216
KI + + NP +++APTRELA QV E + L + +YGG I QMR
Sbjct: 67 KI------NLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL++P VD+ G + D + EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTN--HTVDKVEQNFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QSQRERT+ ++G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRML 357
Query: 456 KSIER 460
++IER
Sbjct: 358 RTIER 362
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 295 bits (754), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 239/391 (61%), Gaps = 14/391 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+S DE +S ++S+++ A L +GI+ L+ IQ +P + G+D++GRARTG GKTL
Sbjct: 20 DASVDEN-HVSNFNLSKEVCARLETKGITSLYSIQAQCFQPILDGKDLVGRARTGCGKTL 78
Query: 152 AFGIPILDKIIKFNE-----KHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTIC 204
AF +PI++ I + N + +GR P+ +LAPTRELAKQV +F A L +IC
Sbjct: 79 AFVLPIVEVINRENPMPASGRRVQGRRPVVALLAPTRELAKQVHSDFQHIGQAFGLTSIC 138
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG P Q RAL G D V+GTPGRV D + R L+ +++F VLDEAD+ML++GF E
Sbjct: 139 VYGGAPYGEQERALRQGCDIVIGTPGRVKDHLDRKTLSFEKLRFRVLDEADEMLNMGFVE 198
Query: 265 DVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLY 321
D+E IL N Q+++FSAT+P W+ ++ ++L T+DLVGD QK + +
Sbjct: 199 DIETILNHAKDNANLQTVLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQKASGSVQHM 258
Query: 322 SIATSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDIS 378
I E+ ++ LI G G+ IVF TKRD L A+ K + LHGD++
Sbjct: 259 LINCQWSERTDLVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVN 318
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
QSQRE L FR +F L+ATDVAARGLD+ V+L++ E P +ET++HR+GRTGR G
Sbjct: 319 QSQREVVLDGFRKNKFQTLVATDVAARGLDISGVELVVQCEPPKEAETYIHRSGRTGRGG 378
Query: 439 KKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
G + + T + + +IER G +F ++
Sbjct: 379 ATGICVTLCTPRNEWAIPNIERKGGFKFVRI 409
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 239/381 (62%), Gaps = 18/381 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
SK E L++ + I+AAL G + PIQK + A++G D+IG+A+TGTGKT A
Sbjct: 13 ESKPEITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAA 72
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTP 210
FGIPI+ KI NEK R+ LV++PTREL QV E + + + VYGG P
Sbjct: 73 FGIPIIQKI---NEK---DRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQP 126
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+R+L G+ V+GTPGR++D I+R ++L V F+VLDEAD+ML +GF +D+E I+
Sbjct: 127 IERQIRSLKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENII 186
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
+ +P RQ+M+FSATMP I S++ KY++ P V + + ++ +I YE
Sbjct: 187 KNVPPERQTMLFSATMPRPILSISKKYMRAPKVVAIHKEV-------VTAPTIDQYYYET 239
Query: 331 PSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLS 387
+ L I + K I+F +TK+ D L A+A + Y E LHGD+SQ+QR+R +
Sbjct: 240 RDKVDGLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMK 299
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G+ +IL+ATDVAARGLD+ N+ ++++++P+ SE++VHR GRTGRAG G A+
Sbjct: 300 KFRSGQVDILVATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFI 359
Query: 448 TDQQARQVKSIERDVGCRFTQ 468
T ++ RQ+K IER + + +
Sbjct: 360 TPREFRQLKLIERSIKTKIIR 380
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/370 (43%), Positives = 239/370 (64%), Gaps = 12/370 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + + +I+ AL +GI PIQ A L A+ GRD+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFANFPLKPEILEALKAKGIFAPTPIQAAALPIALDGRDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ +E RGR P LVL PTRELA QV +E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSSE---RGRPPRALVLTPTRELALQVAEEVASVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P+ RQ
Sbjct: 118 ARGADVVVATPGRALDYLEQGVLDLSRVEIAVLDEADEMLSMGFEEEVERLLSATPKERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIGQL 337
+++FSAT+P W R L+ +Y++ P+ +++V + +G++ A + ++ ++ L
Sbjct: 178 TLLFSATLPSWARKLSERYMRAPVLINVVRE------EGVTYQEEAILAPTDRLGLLSDL 231
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A + IVFT TKR+ + +A + ++ + +HGD+SQS RER L AFR+G +
Sbjct: 232 LFVKAP-KRAIVFTSTKRETEEVAAGLLQAGHPARAIHGDLSQSDRERVLKAFREGEVRV 290
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+P VDL++HY LP + E + HR+GRTGRAG+ G + Y ++ R++
Sbjct: 291 LVATDVAARGLDIPEVDLVVHYRLPQSPEAYQHRSGRTGRAGRGGEVVAFYGPREKRELM 350
Query: 457 SIERDVGCRF 466
++E+ VG F
Sbjct: 351 ALEKAVGRTF 360
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/354 (44%), Positives = 224/354 (63%), Gaps = 12/354 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 123 LTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 182
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 183 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 242
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
AL GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 243 EMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 302
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 303 DATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 362
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + + LHGD++Q+QRE L+ FR
Sbjct: 363 QVIPDIIRCYSHGGRTIIFTETKDSASELSGLI---HGSRALHGDVAQAQREVILAGFRS 419
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVI 473
>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 620
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 159/369 (43%), Positives = 229/369 (62%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV E ++ L + +YGGT I
Sbjct: 63 PLLNKL------ELSQRKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++++ ++L+NP+T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLRNPITIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 LRMLRTIER 362
>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
Length = 663
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 373 QIRMLRTIER 382
>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
Length = 663
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 373 QIRMLRTIER 382
>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
Length = 470
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/385 (40%), Positives = 234/385 (60%), Gaps = 11/385 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-----K 163
+I AL GI FPIQ+ L A+ G D+IG+ARTGTGKTLAF IP++ + + +
Sbjct: 3 EIADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDPE 62
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ E G+ P L++APTRELA QV + ++ T + +YGG P Q+ AL+ G
Sbjct: 63 YGELAAPGK-PQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDALESG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD V+GTPGR++DL R AL+LS V+ +VLDEAD+ML +GF DVE IL + P+ RQ+M+
Sbjct: 122 VDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQTML 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I L K++++P+ + D ++ + + +KP I+ +++ +
Sbjct: 182 FSATMPGAIVGLARKHMRHPMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVSRIL-QA 240
Query: 342 AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ I+FT+TKR A R+A + + + PLHGD++Q+ RE+ L FRDG+ N L+AT
Sbjct: 241 DDVARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTLVAT 300
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARG+DV N+ +I+Y P +T+VHR GRTGRAG G A+ + K I
Sbjct: 301 DVAARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAGASGIAVTFVDWADLHRWKMINT 360
Query: 461 DVGCRFTQLPRIAVEGGGDMYNDMG 485
+G F + P+ +++D+G
Sbjct: 361 ALGLPFAE-PQETYSSSDHLFHDLG 384
>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
Length = 643
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|452990332|emb|CCQ98554.1| putative ATP-dependent RNA helicase [Clostridium ultunense Esp]
Length = 535
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/376 (43%), Positives = 237/376 (63%), Gaps = 17/376 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+ I Q I+ A+ G + PIQ A + ++G D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 17 EFKIDQAILKAIQEMGFEEPSPIQSACIPKILEGFDVIGQAQTGTGKTAAFGIPIVEKVT 76
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY 220
E LVL PTRELA Q+ E + + + T+ +YGG I HQ+RAL
Sbjct: 77 SSPEVQA-------LVLTPTRELAIQISGELRKISKFKRIKTLPIYGGQSIGHQIRALKQ 129
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV V+GTPGR+ID + R L L V+ VVLDEAD+ML +GF +D+E IL +P +RQ++
Sbjct: 130 GVQVVIGTPGRIIDHLNRKTLKLDHVRIVVLDEADEMLDMGFIDDIESILRSVPADRQTL 189
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLIT 339
+FSATMP IRSL N+Y+K+P TV + + ++ A I +Y + S+ L +
Sbjct: 190 LFSATMPAEIRSLANRYMKDPQTVRV--NREEVAAPLIEQVYYKVLEKNKLDSLCRVLDS 247
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E + G I+F +TK+ D L ++ A+ Y + LHGD+SQ+QR++ + FR R +LI
Sbjct: 248 EEVELG--IIFCRTKKGVDELTESLQARGYLADGLHGDLSQAQRDKVMGDFRTNRIELLI 305
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV NV +I+Y++P E++VHR GRTGRAGK+G AI + T ++ +Q+K+I
Sbjct: 306 ATDVAARGIDVSNVSHVINYDIPQDPESYVHRIGRTGRAGKRGIAITLVTPREMKQLKAI 365
Query: 459 ERDVGCRFT--QLPRI 472
E + T LP I
Sbjct: 366 EHMIKTGITPRSLPTI 381
>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
Length = 643
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|424809183|ref|ZP_18234568.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
gi|342323608|gb|EGU19392.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
Length = 643
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
Length = 643
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 689
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 234/379 (61%), Gaps = 15/379 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 34 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 93
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 94 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 147
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 148 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 207
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 208 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNYWVVKGVEKDEAMS 265
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 266 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 324
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 325 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 384
Query: 455 VKSIERDVGCRF--TQLPR 471
+++IER + QLP+
Sbjct: 385 LRTIERVTKSQMEEIQLPQ 403
>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
Length = 665
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 234/379 (61%), Gaps = 15/379 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNYWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIERDVGCRF--TQLPR 471
+++IER + QLP+
Sbjct: 357 LRTIERVTKSQMEEIQLPQ 375
>gi|449145896|ref|ZP_21776691.1| cold-shock DEAD-box protein A [Vibrio mimicus CAIM 602]
gi|449078284|gb|EMB49223.1| cold-shock DEAD-box protein A [Vibrio mimicus CAIM 602]
Length = 635
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 167/395 (42%), Positives = 240/395 (60%), Gaps = 22/395 (5%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+A D + + ++++S + A+ G + PIQ + MQG+D+IG+A+TGT
Sbjct: 7 IANDQDKAKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGT 66
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICV 205
GKT FGIP+ + + N + GR + LVL PTRELA QV +E + L + V
Sbjct: 67 GKTATFGIPMAETL---NPRDGRVQ---ALVLCPTRELAIQVAQEISKIGRQNDLKALPV 120
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG I Q+RAL YGV V+GTPGR++D + R L L+ V+ VVLDEAD+ML +GF ED
Sbjct: 121 YGGQSIDRQIRALRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVED 180
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+E IL+ P+ RQ+++FSATMP I+ L +Y+K P V + D +++ I
Sbjct: 181 IEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDK-------LTVPLIEQ 233
Query: 326 SMYE--KPSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQS 380
YE + + L I + + G I+F +TKR D L A+ + Y E LHGD++Q+
Sbjct: 234 VYYECKESQKVDALCRILDMEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQA 293
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK 440
QR+R + FRDG+ +LIATDVAARGLDV NV +I+Y++P E++VHR GRTGRAG+K
Sbjct: 294 QRDRVMKKFRDGKAELLIATDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRK 353
Query: 441 GSAILIYTDQQARQVKSIERDVGCRFTQ--LPRIA 473
G AI + ++ RQ+K IER R + LP +A
Sbjct: 354 GIAITLINYREYRQLKLIERVTKARIQRRDLPSMA 388
>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
Length = 646
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/363 (43%), Positives = 229/363 (63%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +P+L+K+
Sbjct: 9 SDLALNDSILSALEGMGFVSPTPIQAASIPHLMEGVDALGKAQTGTGKTAAFSLPLLNKL 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
G+ R P +VLAPTRELA QV E ++ L + +YGGT I QMRAL
Sbjct: 69 -----DLGQ-RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E P++ Q
Sbjct: 123 KHGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++FSATMPP ++++ ++L+ P+T+D+ G + D + EK + +L+
Sbjct: 183 RVLFSATMPPMLKNIVERFLREPVTIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +IL
Sbjct: 241 -ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDIL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R +++
Sbjct: 300 VATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRT 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 634
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 227/365 (62%), Gaps = 13/365 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMR 216
KI + + NP +++APTRELA QV E + L + +YGG I QMR
Sbjct: 67 KI------NLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL+ P VD+ G + D + EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLREPARVDVAGTNHT--VDKVEQNFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QSQRERT+ ++G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRML 357
Query: 456 KSIER 460
++IER
Sbjct: 358 RTIER 362
>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
Length = 639
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P+ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPETAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 232/370 (62%), Gaps = 12/370 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S+ ++ A+ G + PIQ+ + + GRD+I +A+TGTGKT AF +PI++++
Sbjct: 5 ADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
GR P LVLAPTRELA QV + FH+ DT + VYGG PI Q+RAL
Sbjct: 65 ------QPNGRRPQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+ V+ VVGTPGRV+D I+R L+LS V VV+DEAD+ML +GF EDVE IL+ +P RQ+
Sbjct: 119 HPVEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSAT+P + +L +YL++P V + + ++ I + K + +++
Sbjct: 179 ALFSATIPDRVAALARRYLRDPARVAV--EPERVTVPQIEQTYVEVVQRAKVEALTRIL- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ I+F +TKR D L + + Y E LHGD+SQ QR+R ++ FR G+ +LI
Sbjct: 236 DMETPPSAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLI 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV + +I+Y++P E++VHR GRTGRAG+ G+AI + T ++ R ++ I
Sbjct: 296 ATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREI 355
Query: 459 ERDVGCRFTQ 468
ER G R T+
Sbjct: 356 ERATGVRMTR 365
>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
Length = 646
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 229/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L I +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNFWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIER 460
+++IER
Sbjct: 357 LRTIER 362
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/387 (42%), Positives = 235/387 (60%), Gaps = 35/387 (9%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++ +S+ + AL+ G + PIQKA + A+ G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 11 EISLSKQTLQALSEMGFEEPSPIQKAAIPVAIDGVDLIGQAQTGTGKTAAFGIPICEKIN 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 71 PKFQAVQA-------LILTPTRELAVQVSEEISKIGKYRHVKPLPIYGGQSIDRQIRALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF ED+E IL+++P + RQ
Sbjct: 124 FGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPREERQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMYE 329
M+FSATMPP I+ L Y+ P LTV L+ + D I + ++
Sbjct: 184 VMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCR---- 239
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R +
Sbjct: 240 --------IIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKK 291
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FRDG+ +L+ATDVAARGLD+ NV +I++++P E++VHR GRTGRAG+KG AI + +
Sbjct: 292 FRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLIS 351
Query: 449 DQQARQVKSIERDVGCRFT--QLPRIA 473
++ RQ++ IER + R +LP +A
Sbjct: 352 SREYRQLRLIERLIKTRIVRKELPTLA 378
>gi|417948598|ref|ZP_12591742.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809545|gb|EGU44662.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 638
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 229/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L I +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNFWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIER 460
+++IER
Sbjct: 357 LRTIER 362
>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
Length = 673
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 233/379 (61%), Gaps = 15/379 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ +I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPARVDVAGTN--HTVDKVAQNYWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIERDVGCRF--TQLPR 471
+++IER + QLP+
Sbjct: 357 LRTIERVTKSQMEEIQLPQ 375
>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
Length = 663
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 373 QIRMLRTIER 382
>gi|384567061|ref|ZP_10014165.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384522915|gb|EIF00111.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 577
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 239/380 (62%), Gaps = 19/380 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL+ G + PIQ+A + P ++G D++G+A TGTGKT AF +P+L +I
Sbjct: 30 LGLRPELLKALSDLGYEEPTPIQRAAIPPLLEGADVVGQAATGTGKTAAFSLPVLHRIAD 89
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYG 221
+ RG P LVL PTRELA QV + + L + VYGG P+ Q+R+L+ G
Sbjct: 90 LD----RGTEPSALVLVPTRELAAQVCEAMYRYGHHLGVRVVPVYGGQPMGRQLRSLESG 145
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL+R P +RQ+M+
Sbjct: 146 VDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDRTPDDRQTML 205
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----EKPSIIGQ 336
FSATMPP I + +YL+ P ++L S + +G S SI + Y KP+ +G+
Sbjct: 206 FSATMPPRIAGMVRRYLREPRRIEL---SRAESTNGHS-ASITQTAYLVPRGHKPAALGR 261
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ A +VF +T+ + DRL M + Y E LHG + Q+QR R + R G +
Sbjct: 262 ILDIEAPEA-TVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQNQRNRVVGRLRAGTAD 320
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+++ATDVAARGLD+ + +++Y++P+ E +VHR GR GRAG++GSAI + ++ R +
Sbjct: 321 LVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGREGSAITLVEPREHRMI 380
Query: 456 KSIERDVG--CRFTQLPRIA 473
K+IER G +LP +A
Sbjct: 381 KTIERVTGHTIPVRKLPTVA 400
>gi|350533075|ref|ZP_08912016.1| ATP-dependent RNA helicase DeaD [Vibrio rotiferianus DAT722]
Length = 639
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
Length = 653
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 243
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 244 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 302
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 303 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 362
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 363 QIRMLRTIER 372
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 233/361 (64%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ L +G + PIQKA + M GRD++G+A+TGTGKT AF +P+L++I
Sbjct: 59 SEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLERI----- 113
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ + RNP LVL PTRELA QV + F E +++ + VYGG+ Q+ +L GV+
Sbjct: 114 -NSKERNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKRGVE 172
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+VGTPGRV+D I++ LN +Q +VLDEAD+ML +GF +D+E ILE+LP RQ ++FS
Sbjct: 173 IIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLFS 232
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMPP IR L+ +YL++P + + + +K A I + I K ++ +++ E
Sbjct: 233 ATMPPEIRKLSKRYLRDPAEITI--KAKKKEAQLIRQHYITVQNSYKLEVLRRVL-ELNY 289
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK +LA ++ A ++N L+GD+ Q+ RERT+ R G NIL+ATDV
Sbjct: 290 GEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATDV 349
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL + ++ + ++ER V
Sbjct: 350 AARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLERAV 409
Query: 463 G 463
G
Sbjct: 410 G 410
>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|360037704|ref|YP_004939466.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|379744210|ref|YP_005335262.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|417811754|ref|ZP_12458415.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|417816943|ref|ZP_12463573.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|418330362|ref|ZP_12941343.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|418337842|ref|ZP_12946737.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|418341896|ref|ZP_12948726.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|418349516|ref|ZP_12954248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|418353968|ref|ZP_12956693.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|419826238|ref|ZP_14349741.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|421317541|ref|ZP_15768111.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|421320180|ref|ZP_15770738.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|421324222|ref|ZP_15774749.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|421327193|ref|ZP_15777711.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|421332285|ref|ZP_15782764.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|421335923|ref|ZP_15786386.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|421339731|ref|ZP_15790165.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|421346512|ref|ZP_15796896.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|422889725|ref|ZP_16932194.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|422898635|ref|ZP_16935924.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|422904683|ref|ZP_16939575.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|422915030|ref|ZP_16949479.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|422927691|ref|ZP_16960635.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|423146762|ref|ZP_17134250.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|423147752|ref|ZP_17135130.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|423151539|ref|ZP_17138770.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|423158165|ref|ZP_17145178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|423161967|ref|ZP_17148839.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|423163057|ref|ZP_17149880.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|423732922|ref|ZP_17706165.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|423741886|ref|ZP_17710664.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|423910317|ref|ZP_17728305.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|423919387|ref|ZP_17729217.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|424002001|ref|ZP_17745086.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|424004242|ref|ZP_17747248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|424022173|ref|ZP_17761856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|424028957|ref|ZP_17768508.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|424588443|ref|ZP_18027939.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|424593192|ref|ZP_18032551.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|424597121|ref|ZP_18036338.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|424603945|ref|ZP_18042996.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|424604697|ref|ZP_18043684.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|424608524|ref|ZP_18047402.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|424615297|ref|ZP_18054013.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|424619146|ref|ZP_18057751.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|424620063|ref|ZP_18058611.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|424642688|ref|ZP_18080466.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|424650804|ref|ZP_18088350.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|424654585|ref|ZP_18091903.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|440711549|ref|ZP_20892190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443505549|ref|ZP_21072438.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443509457|ref|ZP_21076152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443513286|ref|ZP_21079856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443517121|ref|ZP_21083566.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443520773|ref|ZP_21087105.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443521684|ref|ZP_21087960.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443529708|ref|ZP_21095725.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443533398|ref|ZP_21099344.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443537075|ref|ZP_21102933.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|449057861|ref|ZP_21736157.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|340040093|gb|EGR01066.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|340044574|gb|EGR05522.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|341627743|gb|EGS53041.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|341629303|gb|EGS54468.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|341629533|gb|EGS54685.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|341632554|gb|EGS57419.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|341643170|gb|EGS67467.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|356417845|gb|EHH71456.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|356424073|gb|EHH77493.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|356424755|gb|EHH78152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|356431226|gb|EHH84431.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|356435650|gb|EHH88800.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|356436734|gb|EHH89844.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|356439786|gb|EHH92749.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|356440797|gb|EHH93729.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|356446378|gb|EHH99178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|356455033|gb|EHI07680.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|356457236|gb|EHI09803.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|356648858|gb|AET28912.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796804|gb|AFC60274.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|395919999|gb|EJH30822.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|395922236|gb|EJH33055.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|395925068|gb|EJH35870.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|395931083|gb|EJH41829.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|395934118|gb|EJH44857.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|395935605|gb|EJH46340.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|395941290|gb|EJH51968.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|395948039|gb|EJH58694.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|395955100|gb|EJH65704.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|395966596|gb|EJH76713.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|395967297|gb|EJH77393.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|395968492|gb|EJH78444.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|395969359|gb|EJH79241.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|395978783|gb|EJH88152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|408006419|gb|EKG44567.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|408012419|gb|EKG50198.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|408039736|gb|EKG76005.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|408046854|gb|EKG82518.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|408048545|gb|EKG83951.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|408059272|gb|EKG94040.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|408609028|gb|EKK82411.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|408616441|gb|EKK89595.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|408646650|gb|EKL18233.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|408649426|gb|EKL20739.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|408661260|gb|EKL32245.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|408847857|gb|EKL87915.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|408850986|gb|EKL90926.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|408872348|gb|EKM11568.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|408876938|gb|EKM16042.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|439973036|gb|ELP49279.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443429993|gb|ELS72614.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443433860|gb|ELS80072.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443437457|gb|ELS87240.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443441280|gb|ELS94648.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443445532|gb|ELT02252.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443452146|gb|ELT12374.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443459278|gb|ELT26672.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443463363|gb|ELT34368.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443467084|gb|ELT41740.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|448262884|gb|EMB00131.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
Length = 643
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/384 (40%), Positives = 228/384 (59%), Gaps = 14/384 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G S+ ++S +V AL +GI LFP+Q E M+G D++ +ARTG+GKTLAFGIPI
Sbjct: 44 GRPFSEFNLSSGMVKALEAQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKTLAFGIPI 103
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
++K+ K RGR P ++ PTRELA QV + L +YGG S Q R
Sbjct: 104 VEKLNKKEGPLARGRGPAAVIFCPTRELAIQVRDVLAGVSGDLVVAALYGGVAYSTQERV 163
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN- 276
L GVD VV TPGR D +++ L+ V+ V LDEAD ML +GF ED+E++L+R+ +
Sbjct: 164 LFSGVDIVVATPGRAKDFLEKGTLHFERVKMVCLDEADHMLDIGFKEDIELLLQRVAEQN 223
Query: 277 --------RQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSM 327
Q+++FSAT+P W+ T ++ KN +D+VG + A+ I Y
Sbjct: 224 GSTPDEPKHQTLLFSATVPDWVH--TCSFISKNKKFIDMVGQGAMRAANTIRFYRRKCGF 281
Query: 328 YEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTL 386
E S++ L+ ++ + G+ ++FT TK+D L+ K + + LHGD+ Q QRE T+
Sbjct: 282 AEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTM 340
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+FRD +F++LIATDVAARGLD+P VDL+I P + F+HR GRTGRAG+KG +L+
Sbjct: 341 KSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLL 400
Query: 447 YTDQQARQVKSIERDVGCRFTQLP 470
+ + V+ IER +F LP
Sbjct: 401 HQPKDEYVVERIERHAKIKFEVLP 424
>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
Length = 643
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 229/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 188/520 (36%), Positives = 275/520 (52%), Gaps = 68/520 (13%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 13 NFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + A PSL + VYGG + Q+R
Sbjct: 73 KL-NLDKRH-----PQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLR 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 127 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 187 RQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDM 246
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T+ ++F +TKR A +L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 247 LNTDRPY--LAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 304
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV V + +Y++P +E+++HR GRTGRAG KG A+ + T + ++
Sbjct: 305 LLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPEL 364
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDM-----YNDMGGRSGYGSMRDR-------------- 496
++I+R G FT + EGGG D GR DR
Sbjct: 365 RNIQRVAGVTFT-----SSEGGGQRRPASDTADRQGRERRSGRNDRRSSGGNDSGGGRRG 419
Query: 497 ---------------------QYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNNSSY 535
G+DRSS SG R G RS G S Y
Sbjct: 420 GGREQAGRRDATSGERRSSRGSSDRGGYDRSS----SGSARGGQGRSAGQ---SSERSGY 472
Query: 536 SGQGGGSSSGGFGSNANRSGKFGG----PGFSRSGGWGES 571
GGS+ GG G +A +S + GG G S GG G S
Sbjct: 473 DRSSGGSARGGQGRSAGQSSERGGYDRSSGGSARGGQGRS 512
>gi|222626093|gb|EEE60225.1| hypothetical protein OsJ_13207 [Oryza sativa Japonica Group]
Length = 697
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 147/283 (51%), Positives = 195/283 (68%), Gaps = 24/283 (8%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQ--------------KAVLEPAMQGRDMIG 141
++ L I++L + + +V+ L +RGI+ LFPIQ +AVL PA+ GRD+I
Sbjct: 101 EDELAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIA 160
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPS 199
RA+TGTGKTLAFGIP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP
Sbjct: 161 RAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK 220
Query: 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
L T+CVYGG + Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+
Sbjct: 221 LSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLA 280
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
VGF EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI
Sbjct: 281 VGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIK 340
Query: 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
LY+I + K +++ LIT I+ + D + H
Sbjct: 341 LYAIPLTSTSKRTVLSDLIT--------IIHYELPNDPETFVH 375
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 266/481 (55%), Gaps = 42/481 (8%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 13 NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + PSL + VYGG + Q+R
Sbjct: 73 KL-NLDKRH-----PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLR 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 127 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 187 RQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDM 246
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T+ ++F +TKR A +L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 247 LNTDRPY--LAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 304
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV V + +Y++P +E+++HR GRTGRAG KG A+ + T + ++
Sbjct: 305 LLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPEL 364
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMY--NDMGGRSGYGSMRDRQYADTGFDRSSRMG-DS 512
++I+R G FT + EGGG D R G R DR S G D+
Sbjct: 365 RNIQRVAGVTFT-----SSEGGGQRRPAPDTAERQGRNDRSGRN------DRRSFGGNDA 413
Query: 513 GFGRSGGYRSPGSGRYGGNNSSYSGQ--------------GGGSSSGGFGSNANRSGKFG 558
G GR G SGR G N GGS+ GG G +A +S G
Sbjct: 414 GGGRRSGREQ--SGRRDGANGERRSNRSSSERGGYDRDRSNGGSTRGGQGRSAGQSSGRG 471
Query: 559 G 559
G
Sbjct: 472 G 472
>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 732
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 236/373 (63%), Gaps = 7/373 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D +++EG+ + L + ++AAL G K PIQ+ + ++G D++G A+TGTGKT
Sbjct: 54 DKAEEEGVRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTA 113
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG
Sbjct: 114 AFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE
Sbjct: 174 SPYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEK 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR + +YL +P V + + + IS +
Sbjct: 234 ILEGTPDSKQVALFSATMPNSIRKIAQQYLNDPREVRVKAKT--TTSSNISQRYMQVMHS 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ G IVF +TK++ + +A + A+ + ++GDI Q RERT+
Sbjct: 292 HKLDAMTRVLEVENYDG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
A RDGR +IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG++G+AIL
Sbjct: 351 ALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFV 410
Query: 448 TDQQARQVKSIER 460
T ++ ++ IE+
Sbjct: 411 TPREKYMLRQIEK 423
>gi|443291644|ref|ZP_21030738.1| Cold-shock DEAD box protein A [Micromonospora lupini str. Lupac 08]
gi|385885248|emb|CCH18845.1| Cold-shock DEAD box protein A [Micromonospora lupini str. Lupac 08]
Length = 581
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 247/409 (60%), Gaps = 16/409 (3%)
Query: 73 SSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
SS QH + D + + +E ++L + +++ AL+ G + PIQ+ + P
Sbjct: 2 SSAPAQH-DAPTDAPLDAVPADAEEVYAFTELGLRPELLGALSALGYEEPTPIQREAIPP 60
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192
+ GRD++G+A TGTGKT AF +P+L+++ H G +P+ LVL PTRELA QV +
Sbjct: 61 LLDGRDLLGQAATGTGKTAAFALPLLNRM----SAHRDGGDPVALVLVPTRELAVQVSEA 116
Query: 193 FHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
FH L + +YGG PI Q+RALD GVD VV TPGR +D I R L L + VV
Sbjct: 117 FHRYGKDLGARVLPIYGGQPIGRQLRALDSGVDVVVATPGRALDHIARGTLRLGGLATVV 176
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEAD+ML +GFAED+E ILE P RQ+++FSATMP I + ++L+ P+ +++
Sbjct: 177 LDEADEMLDMGFAEDIEAILEHAPAERQTVLFSATMPSRIDGMARQHLREPVRIEI--GR 234
Query: 311 DQKL---ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AK 366
+Q + A + + + KP+ +G+++ + IVF +++ + DRL M +
Sbjct: 235 EQTVAGEAPRVRQSAYIVTRAHKPAALGRVLDVESPTA-AIVFCRSREEVDRLTETMNGR 293
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSET 426
Y E LHG +SQ QR+R + R G ++L+ATDVAARGLDV + +++Y++P+ E+
Sbjct: 294 GYRSEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPES 353
Query: 427 FVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT--QLPRIA 473
+VHR GR GRAG++G AI + ++ R +K+IER G R T ++P +A
Sbjct: 354 YVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRITIDKIPTVA 402
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 266/481 (55%), Gaps = 42/481 (8%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 3 NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + PSL + VYGG + Q+R
Sbjct: 63 KL-NLDKRH-----PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLR 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 117 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 177 RQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDM 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T+ ++F +TKR A +L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 237 LNTDRPY--LAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 294
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV V + +Y++P +E+++HR GRTGRAG KG A+ + T + ++
Sbjct: 295 LLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPEL 354
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMY--NDMGGRSGYGSMRDRQYADTGFDRSSRMG-DS 512
++I+R G FT + EGGG D R G R DR S G D+
Sbjct: 355 RNIQRVAGVTFT-----SSEGGGQRRPAPDTAERQGRNDRSGRN------DRRSFGGNDA 403
Query: 513 GFGRSGGYRSPGSGRYGGNNSSYSGQ--------------GGGSSSGGFGSNANRSGKFG 558
G GR G SGR G N GGS+ GG G +A +S G
Sbjct: 404 GGGRRSGREQ--SGRRDGANGERRSNRSSSERGGYDRDRSNGGSTRGGQGRSAGQSSGRG 461
Query: 559 G 559
G
Sbjct: 462 G 462
>gi|365540016|ref|ZP_09365191.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 674
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L +++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNESILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E + L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E VLDEAD+ML +GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P Q ++FSATMPP ++++ ++YL++P VD+ G S+Q +A Y + + +
Sbjct: 176 QAPGTAQRVLFSATMPPMVKTIVDRYLRDPARVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFR 390
++ L+ E + IVF +T++D +RLA +++ + LHGDI QS RERT+ +
Sbjct: 235 AM--ALLLETEETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
Length = 622
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 221/379 (58%), Gaps = 11/379 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I I+ L R I +LFP+Q + G+D + ARTGTGKTLAF +P+++
Sbjct: 10 DFSNFNIDDAIIKRLHARNIFELFPVQFKTYDAISSGKDAVVLARTGTGKTLAFSLPLVN 69
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
++IK E +P+ LVLAPTREL Q+ +F + VYGG P Q AL
Sbjct: 70 QLIKRQESFKP--SPVVLVLAPTRELVTQIATDFESICVHGIKVTSVYGGVPYKPQCNAL 127
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR- 277
G VVG PGRVIDLI + L LS VQ VVLDE D+ML +GF++DVE IL + N
Sbjct: 128 RNGTHVVVGAPGRVIDLIDKGILKLSSVQHVVLDEVDRMLDMGFSKDVEKILADIYNNET 187
Query: 278 ----QSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
Q+++FSATMP W+ ++ YL N L + L+ + + K + ++ ++ + +
Sbjct: 188 SKKPQTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCPYESRAA 247
Query: 333 IIGQLITEHAKG--GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+ +I + K +CIVF + K+DAD LA + +C LHGD+ Q +RE L FR
Sbjct: 248 TLSDVIKVYCKSRESRCIVFCERKKDADELAASSVMPTDCHVLHGDVPQDKREFVLQKFR 307
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
DG++ L+ T+VAARGLDVP+VDL+I P E ++HR+GRTGRA + G++I YT +
Sbjct: 308 DGKYRTLLTTNVAARGLDVPHVDLVIQCHPPRDVEDYIHRSGRTGRADRSGTSICFYTYK 367
Query: 451 QARQVKSIERDVGCRFTQL 469
+ + IE G F ++
Sbjct: 368 ERSMLSKIENMAGITFRRI 386
>gi|360044772|emb|CCD82320.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 710
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 228/379 (60%), Gaps = 11/379 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I+ I+ L R IS+LFP+Q + GRD + ARTGTGKTLAF +P+++
Sbjct: 97 DFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVN 156
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
+IK + R +P+ LVLAPTREL Q+ +F S + VYGG P Q AL
Sbjct: 157 SLIK--GQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 214
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----- 273
G VVG PGRVIDL+++ L LS V+ VVLDE D+ML +GF++DVE IL ++
Sbjct: 215 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILSKIYNSEN 274
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+ Q+++FSATMP W+ ++ YL + L + L+ + + K + ++ ++ + +
Sbjct: 275 SEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAA 334
Query: 333 IIGQLITEHAKG--GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+ +I + KG +CIVF + K+DAD L+ + A S +C LHG + Q +RE L FR
Sbjct: 335 TLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRELVLQRFR 394
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
DG++ L+ T+VAARGLDVPNVDL+I P E ++HR+GRTGRA + G++I YT +
Sbjct: 395 DGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTSICFYTYK 454
Query: 451 QARQVKSIERDVGCRFTQL 469
+ + IE G F ++
Sbjct: 455 ERSMLSRIENMAGITFRRI 473
>gi|384423097|ref|YP_005632456.1| cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
Length = 644
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|422910192|ref|ZP_16944833.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
gi|341633696|gb|EGS58485.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
Length = 646
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|375263387|ref|YP_005025617.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
gi|369843814|gb|AEX24642.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
Length = 639
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 229/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGVDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|407068769|ref|ZP_11099607.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 662
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ +I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 TAQRVLFSATMPPMVKTIVDRYLRNPARVDVAGTN--HTVDKVAQNFWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIER 460
+++IER
Sbjct: 357 LRTIER 362
>gi|424659059|ref|ZP_18096310.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
gi|408053406|gb|EKG88421.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
Length = 646
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|431794108|ref|YP_007221013.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784334|gb|AGA69617.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 531
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 163/382 (42%), Positives = 234/382 (61%), Gaps = 25/382 (6%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++++S+ ++ AL+ G + PIQK + AM G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 11 EINLSKQVLQALSEMGFEEPSPIQKEAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKVN 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 71 PKFQAVQA-------LILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGRV+D + R L L V+ VVLDEAD+ML +GF ED+E IL ++P + RQ
Sbjct: 124 FGSQVVVGTPGRVLDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILRQVPPEERQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ-- 336
M+FSATMP I+ L Y+ P +V + D +++ I YE I
Sbjct: 184 MMLFSATMPIEIKKLAQNYMHQPKSVAVSRDE-------LTVPLIEQVFYETREKIKVDA 236
Query: 337 --LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 237 LCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGK 296
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+L+ATDVAARGLD+ NV +I++++P E++VHR GRTGRAG+KG AI + + ++ R
Sbjct: 297 VELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYR 356
Query: 454 QVKSIERDVGCRFT--QLPRIA 473
Q++ IER + R +LP +A
Sbjct: 357 QLRLIERLIKTRIVRKELPTLA 378
>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 660
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 157/395 (39%), Positives = 232/395 (58%), Gaps = 15/395 (3%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ S G S D+ + V AL +GI+ LFP+Q E M+G +++ +ARTG+G
Sbjct: 40 APNNGSALTGRPFSDFDLLPNTVEALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSG 99
Query: 149 KTLAFGIPILDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
KTLAFGIPIL+K+ K NE+ RGR P ++ PTRELA QV + +
Sbjct: 100 KTLAFGIPILEKLARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTAL 159
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF +D
Sbjct: 160 YGGVAYSTQERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDD 219
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+++ + N Q+++FSAT+P W+ + + +N +D+VG + A+
Sbjct: 220 IELLLQKVAEQNGSTEGNPNHQTLLFSATVPEWVHTCSF-IPRNKEFIDMVGQGTMRAAN 278
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I Y E ++ L+ ++ + G+ +VFT TK++ L+ K + + LHG
Sbjct: 279 TIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTK-LDSQCLHG 337
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
D+ Q QRE T+ +FRD +F++LIATDVAARGLD+P VDL+I P + F+HR GRTG
Sbjct: 338 DMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTG 397
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470
RAG+KG +L++ + V+ IER +F LP
Sbjct: 398 RAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLP 432
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/386 (41%), Positives = 241/386 (62%), Gaps = 33/386 (8%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
++ +S+ ++ +L+ G + PIQK + A++G D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 10 EIALSKQVLQSLSEMGFEEPSPIQKEAIPLALEGVDLIGQAQTGTGKTAAFGIPIIEKV- 68
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY 220
+ + + ++L+PTRELA QV +E + + + +YGG I Q+RAL +
Sbjct: 69 -----NPKFQAVQAIILSPTRELAVQVSEELAKIGKYRHVKILPIYGGQSIDRQIRALRF 123
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQS 279
G VVGTPGR++D +KR L L V+ VVLDEAD+ML +GF ED+E IL+ +P ++RQ
Sbjct: 124 GSQVVVGTPGRILDHLKRGTLKLQYVKMVVLDEADEMLDMGFVEDIEHILKEVPPEDRQV 183
Query: 280 MMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMYEK 330
M+FSATMP IR L Y+K+P LTV L+ + D I + ++
Sbjct: 184 MLFSATMPLAIRKLAQHYMKDPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCR----- 238
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAF 389
I + G+ I+F +TKR D L ++ A+ Y + LHGD+SQ QR+R + F
Sbjct: 239 -------IIDMEDIGQAIIFCRTKRGVDELVASLEARGYFADALHGDLSQQQRDRVMKRF 291
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
RDG+ +L+ATDVAARGLD+ NV +I++++P E++VHR GRTGRAG+KG AI + +
Sbjct: 292 RDGKIELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLISS 351
Query: 450 QQARQVKSIERDVGCRFT--QLPRIA 473
++ RQ++ IER + R +LP +A
Sbjct: 352 KEYRQLRLIERLIKTRIIRKELPSLA 377
>gi|377574212|ref|ZP_09803243.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
gi|377537015|dbj|GAB48408.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
Length = 544
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 238/393 (60%), Gaps = 12/393 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ D+ DIVAALA GI FPIQ L A+ G D+IG+A+TGTGKTL FG+P+LD++
Sbjct: 48 ADFDVHPDIVAALADAGIVTPFPIQAMTLPVALGGYDIIGQAKTGTGKTLGFGVPLLDRV 107
Query: 162 IK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
+ F + GR P LV+APTRELA QV + +A + +YGG Q
Sbjct: 108 VAPGDEGFEDLPHPGR-PQGLVVAPTRELANQVAGDLTRAASRRGIRVTTIYGGRAFEPQ 166
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ VVGTPGR+IDL+++ LNL ++ +VLDEAD+ML +GF DVE +L + P
Sbjct: 167 IEALQKGVEVVVGTPGRLIDLMQQGHLNLHAIRTLVLDEADEMLDLGFLPDVEKLLAQTP 226
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSI 333
+RQ+M+FSATMP + +L +Y+ P + + D D+ + I Y +K +
Sbjct: 227 ASRQTMLFSATMPGAVVTLARRYMTRPTHIRAISDDDEGQTVAAIDQYVYRAHAMDKVEM 286
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G I+F++TKR A ++A +A + + +HGD+ Q RE+ L AFR+G
Sbjct: 287 VARILQAEGR-GLTIIFSRTKRTAAKVADELADRGFAAASIHGDLGQGAREQALRAFRNG 345
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +IL+ATDVAARG+DV NV +I+Y+ P +T++HRTGRTGRAG KG AI +
Sbjct: 346 KVDILVATDVAARGIDVENVTHVINYQCPEDEKTYLHRTGRTGRAGHKGVAITLVDWDDM 405
Query: 453 RQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMG 485
+ I++ +G Q P +Y D+G
Sbjct: 406 PRWGLIDKALGLGIPQ-PVETYSSSPHLYEDLG 437
>gi|422920974|ref|ZP_16954232.1| cold-shock DEAD box protein A [Vibrio cholerae BJG-01]
gi|341649769|gb|EGS73719.1| cold-shock DEAD box protein A [Vibrio cholerae BJG-01]
Length = 643
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 642
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 240/391 (61%), Gaps = 9/391 (2%)
Query: 85 DDYVAYDDSSKDEGLDI--SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
D V DD+ E + S+L + ++A+LA G K PIQ A + ++GRD++G
Sbjct: 4 DMPVNTDDNQTPEEPTVLFSELGLDARVLASLADLGYEKPSPIQAATIPLLLEGRDVVGL 63
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PS 199
A+TGTGKT AF +P L ++ + + +G + P LVLAPTRELA QV + F A P+
Sbjct: 64 AQTGTGKTAAFALPALSRMAELADTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPN 123
Query: 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
+ VYGG+P Q+ L G VVGTPGRVID I + +L+LS +Q+VVLDEAD+ML
Sbjct: 124 FTVLPVYGGSPYGPQLNGLRRGAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLR 183
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
+GFAE+V+ ILE P+++Q +FSATMP IR + ++YL+NP V + S Q I+
Sbjct: 184 MGFAEEVDKILEATPEDKQVALFSATMPRTIRRIASEYLRNPQEVAV--KSKQSTGTNIT 241
Query: 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDIS 378
+ K + +++ G I F +TK + LA + A+ + ++GDI
Sbjct: 242 QRYLQVMGAHKLDAMTRILESETFEG-VIAFVRTKMATEDLADKLKARGFTAAAINGDIP 300
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
Q QRERT+ R G+ +IL+ATDVAARGLDV + ++++++P+ +E++VHR GRTGRAG
Sbjct: 301 QQQRERTIENLRSGKIDILVATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAG 360
Query: 439 KKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
+KG AIL T ++ +++IE+ TQ+
Sbjct: 361 RKGDAILFMTPREKYLLRAIEKATRQPVTQM 391
>gi|336126222|ref|YP_004578178.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343939|gb|AEH35221.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 672
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNDSILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E + L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E VLDEAD+ML +GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P Q ++FSATMPP ++++ ++YL++P VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPGTAQRVLFSATMPPMVKTIVDRYLRDPARVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA +++ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
gi|227120002|ref|YP_002821897.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
Length = 663
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 373 QIRMLRTIER 382
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 237/382 (62%), Gaps = 13/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S+ D + L + ++ A+A+ G + PIQ + M+GRD++G A+TGTGKT
Sbjct: 53 NSANDNPQGFANLGLPDNVQDAVAKVGYTTPSPIQSETIPILMEGRDVVGLAQTGTGKTA 112
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGG 208
AF +P+L +I N +H P LVLAPTRELA QV F A L + + +YGG
Sbjct: 113 AFALPVLSQI-DINARH-----PQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGG 166
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++GF EDVE
Sbjct: 167 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVER 226
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL P+ +Q +FSATMP IR L+ +YL NP V + S Q+ D I + T+
Sbjct: 227 ILADTPEEKQVALFSATMPNGIRRLSKQYLNNPAEVTV--KSQQRTNDNIKQRFLLTAHR 284
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLS 387
K +++ E IVF +TK + + +A + + YN ++GDI+Q+QRERT+
Sbjct: 285 AKLDAFTRIL-EVTDYDAMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVD 343
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + ++++++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 344 QLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFV 403
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER R ++
Sbjct: 404 TPRERRMLRSIERVTNARLEEM 425
>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
Length = 651
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 243
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 244 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 302
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 303 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 362
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 363 QIRMLRTIER 372
>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 710
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 231/370 (62%), Gaps = 7/370 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
++EG+ + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF
Sbjct: 63 EEEGIKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFA 122
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPI 211
+P L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+
Sbjct: 123 VPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAY 182
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I +
Sbjct: 183 GPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQ 242
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P +RQ +FSATMP IR ++ +YL NP + V A+ Y ++
Sbjct: 243 QTPSDRQVALFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGANTRQRYLQVMGPHKLD 301
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L E G I F +TK + LA + ++ + ++GDI Q QRERT+ A +
Sbjct: 302 AMTRILEVEEFDG--VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALK 359
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+GR +IL+ATDVAARGLDV + +I+Y++P+ +E++VHR GRTGRAG+ G AIL T +
Sbjct: 360 EGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPR 419
Query: 451 QARQVKSIER 460
+ ++SIE+
Sbjct: 420 EKYLLRSIEK 429
>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
Length = 653
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 243
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 244 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 302
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 303 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 362
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 363 QIRMLRTIER 372
>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
Length = 644
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 227/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+KI N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKI-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L+ P+ VD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLREPVMVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|433659726|ref|YP_007300585.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|432511113|gb|AGB11930.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
Length = 643
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
Length = 561
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 239/387 (61%), Gaps = 11/387 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ + L + +++ AL+ G + PIQ+ + P ++GRD++G+A TGTGKT A
Sbjct: 4 NTTDDTSSFADLTLRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAA 63
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTP 210
F +P+L ++ + G G P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 64 FALPVLQRMTR----DGGGGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RAL GVD VV TPGR +D I R L L +++ VVLDEAD+ML +GFAED+E IL
Sbjct: 120 IGRQLRALQQGVDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK-LADGISLYSIATSMYE 329
+ P+NRQ+++FSATMPP I + ++L +P+ +++ ++ A + +
Sbjct: 180 QETPENRQTVLFSATMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAH 239
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
KP+ +G+++ A IVF +T+ + D+L + + Y E LHG + Q QR+R +
Sbjct: 240 KPAALGRVLDVEAPTA-AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGR 298
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
R G ++L+ATDVAARGLD+ + +++Y++P+ E++VHR GR GRAG++G AI +
Sbjct: 299 LRTGTADLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAE 358
Query: 449 DQQARQVKSIERDVGCR--FTQLPRIA 473
++ R +K+IER R ++P IA
Sbjct: 359 PREHRMLKTIERVTKRRIPIEKVPTIA 385
>gi|443471730|ref|ZP_21061785.1| Cold-shock DEAD-box protein A [Pseudomonas pseudoalcaligenes KF707]
gi|442901875|gb|ELS27614.1| Cold-shock DEAD-box protein A [Pseudomonas pseudoalcaligenes KF707]
Length = 558
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/417 (40%), Positives = 249/417 (59%), Gaps = 23/417 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I +++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALGIHPNVLAAISAVGYEEPSPIQSQSIPVILAGHDMIGQAQTGTGKTAAFALPILSRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P L+ I VYGG P+ Q++AL
Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFETYAKQMPGLNVIAVYGGAPMGPQLKAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR+ D ++R+ L+ VQ +VLDEAD+ML +GF ED+EVI E LP++RQ
Sbjct: 123 RQGAQVIVATPGRLCDHLRRDERLLTTVQQLVLDEADEMLKLGFMEDLEVIFEALPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+PP IRS+ ++LK+P V + + Q +A I + +K + + +L+
Sbjct: 183 SVLFSATLPPSIRSIAERHLKSPQHVKIAAKT-QTVAR-IEQAHLMVHADQKTAAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQ--LP--------RIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFD 504
IER G + + LP RI G + YG + DR AD G +
Sbjct: 360 IERVTGQKVAEVRLPNAQQVLDARIKKLTASIAPLVAGAEAVYGDLLDRLVADIGCE 416
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/401 (41%), Positives = 247/401 (61%), Gaps = 18/401 (4%)
Query: 81 QSAVD-DYVAYDDSSKDEGLDIS--KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
QSA D D A ++S + D+S KL + DI+ A+ + G PIQ + + GR
Sbjct: 89 QSADDEDARAAENSEGTDSTDLSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGR 148
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PI+ +I K N R+P LVLAPTRELA QV F E A
Sbjct: 149 DVVGLAQTGTGKTAAFALPIIARIDKSN------RSPQALVLAPTRELALQVADAFQEFA 202
Query: 198 PS---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
++ + +YGG Q+ L G +VGTPGRVID +K+ +L++S + ++VLDEA
Sbjct: 203 DHVGGINVLPIYGGQAYGIQLSGLRRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEA 262
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE ILE P +Q +FSATMP IR L+ +YL +P V + ++ +
Sbjct: 263 DEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEVTVKAET--RT 320
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
IS + + K + +++ E + I+F +TK + + LA + A+ ++ + +
Sbjct: 321 NTNISQRYLNVAHRNKLDALTRIL-EVTEFEAMIIFVRTKYETEELAEKLRARGFSAQAI 379
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
+GDI+Q QRERT+ RDGR +IL+ATDVAARGLDV + +++Y++P+ +E+++HR GR
Sbjct: 380 NGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGR 439
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRF--TQLPRI 472
TGRAG+ G AIL T ++ R ++SIER QLP +
Sbjct: 440 TGRAGRTGEAILFVTPRERRMLRSIERVTNATLEEMQLPTV 480
>gi|417322261|ref|ZP_12108795.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
Length = 643
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|424043805|ref|ZP_17781428.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
gi|408888334|gb|EKM26795.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
Length = 644
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 229/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L+ P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLREPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
gi|417823279|ref|ZP_12469877.1| cold-shock DEAD box protein A [Vibrio cholerae HE48]
gi|419828553|ref|ZP_14352044.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|419833476|ref|ZP_14356937.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
gi|419836530|ref|ZP_14359970.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46B1]
gi|421343387|ref|ZP_15793791.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43B1]
gi|421349335|ref|ZP_15799704.1| cold-shock DEAD box protein A [Vibrio cholerae HE-25]
gi|421355787|ref|ZP_15806118.1| cold-shock DEAD box protein A [Vibrio cholerae HE-45]
gi|422920214|ref|ZP_16953544.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02A1]
gi|423734953|ref|ZP_17708164.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|423810534|ref|ZP_17714585.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|423844428|ref|ZP_17718319.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|423875352|ref|ZP_17721990.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|423999832|ref|ZP_17742995.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02C1]
gi|424009340|ref|ZP_17752280.1| cold-shock DEAD box protein A [Vibrio cholerae HC-44C1]
gi|424011664|ref|ZP_17754509.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55B2]
gi|424021492|ref|ZP_17761245.1| cold-shock DEAD box protein A [Vibrio cholerae HC-59B1]
gi|424589187|ref|ZP_18028652.1| cold-shock DEAD box protein A [Vibrio cholerae CP1037(10)]
gi|424626901|ref|ZP_18065322.1| cold-shock DEAD box protein A [Vibrio cholerae HC-50A1]
gi|424627793|ref|ZP_18066126.1| cold-shock DEAD box protein A [Vibrio cholerae HC-51A1]
gi|424631593|ref|ZP_18069786.1| cold-shock DEAD box protein A [Vibrio cholerae HC-52A1]
gi|424638508|ref|ZP_18076475.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55A1]
gi|424642312|ref|ZP_18080154.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A1]
gi|424646919|ref|ZP_18084618.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A1]
gi|429885422|ref|ZP_19367011.1| Cold-shock DEAD-box protein A [Vibrio cholerae PS15]
gi|443525638|ref|ZP_21091795.1| cold-shock DEAD box protein A [Vibrio cholerae HC-78A1]
gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
gi|340049409|gb|EGR10325.1| cold-shock DEAD box protein A [Vibrio cholerae HE48]
gi|341631628|gb|EGS56512.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02A1]
gi|395941954|gb|EJH52631.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43B1]
gi|395950457|gb|EJH61076.1| cold-shock DEAD box protein A [Vibrio cholerae HE-45]
gi|395955952|gb|EJH66546.1| cold-shock DEAD box protein A [Vibrio cholerae HE-25]
gi|408007902|gb|EKG45938.1| cold-shock DEAD box protein A [Vibrio cholerae HC-50A1]
gi|408018750|gb|EKG56181.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55A1]
gi|408019565|gb|EKG56962.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A1]
gi|408026495|gb|EKG63501.1| cold-shock DEAD box protein A [Vibrio cholerae HC-52A1]
gi|408038183|gb|EKG74537.1| cold-shock DEAD box protein A [Vibrio cholerae CP1037(10)]
gi|408039214|gb|EKG75506.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A1]
gi|408060259|gb|EKG94961.1| cold-shock DEAD box protein A [Vibrio cholerae HC-51A1]
gi|408623626|gb|EKK96580.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|408630406|gb|EKL03003.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|408637667|gb|EKL09695.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|408645684|gb|EKL17323.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|408646732|gb|EKL18314.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|408650800|gb|EKL22075.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
gi|408843932|gb|EKL84071.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02C1]
gi|408857080|gb|EKL96768.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46B1]
gi|408862444|gb|EKM01960.1| cold-shock DEAD box protein A [Vibrio cholerae HC-59B1]
gi|408864364|gb|EKM03807.1| cold-shock DEAD box protein A [Vibrio cholerae HC-44C1]
gi|408867368|gb|EKM06729.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55B2]
gi|429227775|gb|EKY33757.1| Cold-shock DEAD-box protein A [Vibrio cholerae PS15]
gi|443455970|gb|ELT19680.1| cold-shock DEAD box protein A [Vibrio cholerae HC-78A1]
Length = 643
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
Length = 644
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 229/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L+ P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLREPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|444426564|ref|ZP_21221977.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240216|gb|ELU51762.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 639
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ G+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-----DLGQ-RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|388598566|ref|ZP_10156962.1| ATP-dependent RNA helicase DeaD [Vibrio campbellii DS40M4]
Length = 641
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ G+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-----DLGQ-RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|417819858|ref|ZP_12466473.1| cold-shock DEAD box protein A [Vibrio cholerae HE39]
gi|423941342|ref|ZP_17732907.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|423973094|ref|ZP_17736452.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
gi|340040716|gb|EGR01688.1| cold-shock DEAD box protein A [Vibrio cholerae HE39]
gi|408662755|gb|EKL33661.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|408666696|gb|EKL37474.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
Length = 643
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 239/391 (61%), Gaps = 7/391 (1%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A D +++D ++L I ++AAL G K PIQ+A + ++GRD++G A+TGTG
Sbjct: 5 APDQNTQDTTPTFAELGIDARVLAALEAIGYEKPSPIQEATIPVLLEGRDVVGMAQTGTG 64
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICV 205
KT AF +P L ++ + + +G + LVLAPTRELA QV + F A L+ + V
Sbjct: 65 KTAAFAVPALSRLAELADLNGPSTSTQVLVLAPTRELALQVGEAFASYAVQLEDFTVLPV 124
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG+ Q+ L G VVGTPGRVID +KR +L L ++Q++VLDEAD+ML +GFAED
Sbjct: 125 YGGSSYGPQLAGLRRGAQVVVGTPGRVIDHLKRGSLKLDDLQYLVLDEADEMLRMGFAED 184
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE IL + P+++Q +FSATMPP IR + +YL+NP + + + A I +
Sbjct: 185 VETILSQTPEDKQVALFSATMPPAIRKIAQRYLRNPEEISVKAKT--STATNIRQRYLQV 242
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
K + +L+ G IVF +TK + +A + A+ + ++GDI Q RE+
Sbjct: 243 MGAHKLEAMTRLLEVEEHDG-IIVFVRTKAATEEVAEKLRARGHAATAINGDIPQQAREK 301
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
++ R G+ +IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG+ G AI
Sbjct: 302 SVEQLRSGKIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAI 361
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
L T ++ +++IE+ Q+P +VE
Sbjct: 362 LFMTPREKYLLRAIEKTTRQPVEQMPMPSVE 392
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 235/366 (64%), Gaps = 15/366 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+ + G PIQ A + QGRD++G A+TGTGKT AF +PIL ++ + +K
Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKK----- 222
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVL+PTRELA QV F E A L + +YGG Q+ L G VVGTP
Sbjct: 223 -PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTP 281
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID ++R +L+LSE++++VLDEAD+ML++GF EDVE IL P+++Q+ +FSATMP
Sbjct: 282 GRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPAS 341
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IR L+ +YL++P V + S Q+ AD I + + + K + +++ E + I+
Sbjct: 342 IRRLSKQYLEDPREVTI--KSQQRTADNIHQQYLLVNHHYKLDALTRIL-EVTEFDAMIM 398
Query: 350 FTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
F +TK++ + LA + A+ ++ ++GD++Q+QRERT+ RDGR +IL+ATDVAARGLD
Sbjct: 399 FARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLD 458
Query: 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT- 467
V + +++Y++P+ +E++VHR GRTGRAG+ G AIL T ++ R ++SIER
Sbjct: 459 VERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEE 518
Query: 468 -QLPRI 472
QLP +
Sbjct: 519 MQLPTV 524
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/401 (41%), Positives = 247/401 (61%), Gaps = 18/401 (4%)
Query: 81 QSAVD-DYVAYDDSSKDEGLDIS--KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
QSA D D A ++S + D+S KL + DI+ A+ + G PIQ + + GR
Sbjct: 89 QSADDEDARAAENSEGTDSTDLSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGR 148
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PI+ +I K N R+P LVLAPTRELA QV F E A
Sbjct: 149 DVVGLAQTGTGKTAAFALPIIARIDKSN------RSPQALVLAPTRELALQVADAFQEFA 202
Query: 198 PS---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
++ + +YGG Q+ L G +VGTPGRVID +K+ +L++S + ++VLDEA
Sbjct: 203 DHVGGINVLPIYGGQAYGIQLSGLRRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEA 262
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE ILE P +Q +FSATMP IR L+ +YL +P V + ++ +
Sbjct: 263 DEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEVTVKAET--RT 320
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
IS + + K + +++ E + I+F +TK + + LA + A+ ++ + +
Sbjct: 321 NTNISQRYLNVAHRNKLDALTRIL-EVTEFEAMIIFVRTKYETEELAEKLRARGFSAQAI 379
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
+GDI+Q QRERT+ RDGR +IL+ATDVAARGLDV + +++Y++P+ +E+++HR GR
Sbjct: 380 NGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGR 439
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRF--TQLPRI 472
TGRAG+ G AIL T ++ R ++SIER QLP +
Sbjct: 440 TGRAGRTGEAILFVTPRERRMLRSIERVTNATLEEMQLPTV 480
>gi|451970445|ref|ZP_21923671.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
gi|451933531|gb|EMD81199.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
Length = 640
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 227/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+KI N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKI-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L+ P+ VD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLREPVMVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
Length = 489
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 232/368 (63%), Gaps = 23/368 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D ++L ++ IVAALA +GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L
Sbjct: 7 DFAELGVAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66
Query: 160 KIIKFNEKHG----------------RGRNPLCLVLAPTRELAKQVEKEFHESAPS--LD 201
+++ NE R P LV+ PTRELAKQV + ++ +D
Sbjct: 67 RVVGKNEDGAAPADPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDID 126
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q++ L GVD VVGTPGR++DL R L L +V+ VVLDEAD+ML +G
Sbjct: 127 IMTIYGGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLG 186
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL--ADGIS 319
F DVE I+ +P +RQ+M+FSATMP + +L +Y+ P + + D L +
Sbjct: 187 FLPDVEKIINAVPAHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQ 246
Query: 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDIS 378
L A SM +K ++ +++ + G+ I+FT+TKR AD+LA + + + +PLHGD+
Sbjct: 247 LVYRAHSM-DKSELVARMLQAEGR-GRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLG 304
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
Q+QRE+ L +FR+G+ ++L+ATDVAARG+D+ +V +++Y+ P+ +T+VHR GRTGRAG
Sbjct: 305 QAQREKALKSFREGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAG 364
Query: 439 KKGSAILI 446
G A+ +
Sbjct: 365 NTGIAVTL 372
>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 794
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 228/379 (60%), Gaps = 11/379 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I+ I+ L R IS+LFP+Q + GRD + ARTGTGKTLAF +P+++
Sbjct: 181 DFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVN 240
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
+IK + R +P+ LVLAPTREL Q+ +F S + VYGG P Q AL
Sbjct: 241 SLIK--GQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 298
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----- 273
G VVG PGRVIDL+++ L LS V+ VVLDE D+ML +GF++DVE IL ++
Sbjct: 299 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILSKIYNSEN 358
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+ Q+++FSATMP W+ ++ YL + L + L+ + + K + ++ ++ + +
Sbjct: 359 SEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAA 418
Query: 333 IIGQLITEHAKG--GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+ +I + KG +CIVF + K+DAD L+ + A S +C LHG + Q +RE L FR
Sbjct: 419 TLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRELVLQRFR 478
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
DG++ L+ T+VAARGLDVPNVDL+I P E ++HR+GRTGRA + G++I YT +
Sbjct: 479 DGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTSICFYTYK 538
Query: 451 QARQVKSIERDVGCRFTQL 469
+ + IE G F ++
Sbjct: 539 ERSMLSRIENMAGITFRRI 557
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I+ I+ L R IS+LFP+Q + GRD + ARTGTGKTLAF +P+++
Sbjct: 10 DFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVN 69
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
+IK + R +P+ LVLAPTREL Q+ +F S + VYGG P Q AL
Sbjct: 70 SLIK--GQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 127
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
G VVG PGRVIDL+++ L LS V+ VVLDE D+ML +GF++DVE+
Sbjct: 128 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVEI 177
>gi|449667537|ref|XP_002167666.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 543
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/332 (45%), Positives = 218/332 (65%), Gaps = 7/332 (2%)
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
RTGTGKTL F +P+L+K+ + + R ++PL L LAPTRELA Q+ KE + P TI
Sbjct: 4 RTGTGKTLGFALPVLEKLKNIDSEQKR-KSPLVLTLAPTRELAIQICKEVEKYKPRQMTI 62
Query: 204 -CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
C YGG P Q + L G+D +VGTPGR++D I + L++S++Q+V+LDEAD+M+ +GF
Sbjct: 63 SCFYGGAPYDKQEQELRNGIDFLVGTPGRILDHINKGRLDVSKLQYVILDEADRMMDMGF 122
Query: 263 AEDVEVILER--LPQNR-QSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGI 318
E +E IL N+ Q+++FSAT+P W++ + KYL KN DL+G K A +
Sbjct: 123 QESMEEILSYAYTEDNKPQTLLFSATVPAWLQKNSEKYLTKNLKKFDLIGRDKNKGATTV 182
Query: 319 SLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDI 377
+I + +++PS I +I +++ K GK I+FT TK++A+ LA + + + LHGDI
Sbjct: 183 EHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANELALNSVINMDSQVLHGDI 242
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437
Q QRE TL +FR+G+FN LIATDVAARGLD+P VDL+I E P ++++HR GRTGRA
Sbjct: 243 QQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPKDVDSYIHRAGRTGRA 302
Query: 438 GKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
G+KG I+ Y Q V ++E G FT++
Sbjct: 303 GRKGVCIIFYKPGQEYGVAAVEHKAGISFTRI 334
>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 607
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/362 (45%), Positives = 228/362 (62%), Gaps = 15/362 (4%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ LA +G S PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 65 SEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL----- 119
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
+ GR + P LVLAPTRELA QV F A P L + VYGGT Q+ L GVD
Sbjct: 120 ESGR-KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVD 178
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D +++ L+ S + +VLDEAD+ML +GF +DVE ILE+LP+ RQ ++FS
Sbjct: 179 VVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFS 238
Query: 284 ATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
ATMPP IR L+ +YL +P V + D D KL I +I M K + Q + +
Sbjct: 239 ATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL---IRQRAITVPMSHKLEAL-QRVLDAC 294
Query: 343 KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
G I+F +TK +A + A + L+GD+ Q+QRERT+ R G +IL+ATD
Sbjct: 295 GGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATD 354
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461
VAARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G A+L T ++ R ++++ER
Sbjct: 355 VAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERA 414
Query: 462 VG 463
G
Sbjct: 415 TG 416
>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
Length = 576
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 234/380 (61%), Gaps = 19/380 (5%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
DE + L + +++ AL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +
Sbjct: 23 DEASAFTDLGLRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFAL 82
Query: 156 PILDKIIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPIS 212
P+L ++ GR G P+ LVL PTRELA QV + FH L + +YGG PI
Sbjct: 83 PLLHRM-----PDGRAGGEPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIG 137
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+RALD GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE
Sbjct: 138 RQLRALDLGVDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEH 197
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIATSM 327
PQ RQ+++FSATMP I + ++L +P+ + + +Q++A S Y +A +
Sbjct: 198 APQQRQTVLFSATMPSRIDGMARQHLTDPVRIQI--GREQQVAGETPRVRQSAYIVARA- 254
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R +
Sbjct: 255 -HKPAALGRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVM 312
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
R G ++L+ATDVAARGLDV + +++Y++P+ E++VHR GR GRAG++G AI +
Sbjct: 313 GRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITL 372
Query: 447 YTDQQARQVKSIERDVGCRF 466
++ R +K+IER G R
Sbjct: 373 AEPREHRMLKTIERVTGQRI 392
>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
Length = 641
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/369 (42%), Positives = 227/369 (61%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 63 PLLNKL------ELSQRKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++++ ++L++P+T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLRDPITIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 IRMLRTIER 362
>gi|424030057|ref|ZP_17769555.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
gi|408883063|gb|EKM21857.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
Length = 643
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 230/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+T+D+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTIDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 220/353 (62%), Gaps = 11/353 (3%)
Query: 148 GKTLAFGIPILDKIIK--FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTI 203
GKTLAF +P+L+ + + + + GRGR P +VLAPTRELAKQV +F +A L T+
Sbjct: 130 GKTLAFVLPVLESLSQSGYTKSLGRGRAPAVIVLAPTRELAKQVHADFETYGNAVGLSTV 189
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
CVYGG P Q AL GVD VVGTPGR+ D ++R LNL ++F +LDEAD+ML++GF
Sbjct: 190 CVYGGAPYGPQENALRRGVDIVVGTPGRIKDHLERGGLNLKSLKFRILDEADEMLNMGFV 249
Query: 264 EDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISL 320
+DVE IL + P Q+++FSAT+P W++ + K+LK TVDLVGD K ++ +
Sbjct: 250 DDVEKILGGVDDPSKVQTLLFSATLPTWVQQIARKFLKPERRTVDLVGDEKMKASNNVKH 309
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQS 380
+ + ++ +I + GG+ IVFT+TK DA LA + KS LHGDI Q+
Sbjct: 310 LLLPGHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVL-KSGTARALHGDIPQN 368
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK 440
QRE TL FR +F++L+ATDVAARGLD+ +V L+I E P +ET++HR+GRTGRAG
Sbjct: 369 QREVTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGNT 428
Query: 441 GSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSM 493
G ++L Y ++ + IER G +F RIA D+ G + G +
Sbjct: 429 GISVLFYDRKKEYMIPQIERKAGFKFE---RIAAPQPADIAKASGNTATDGVL 478
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 13/376 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S ++EG + L + +++AL G K PIQ+ + P + G D++G A+TGTGKT
Sbjct: 121 ESHEEEGTRFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTA 180
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGG 208
AF +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ + +YGG
Sbjct: 181 AFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGG 240
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE
Sbjct: 241 SPYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVET 300
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIAT 325
ILE P +Q +FSATMP IR + +YL +P V + K G ++ Y
Sbjct: 301 ILEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEVRV----KTKTTTGANIRQRYMQVM 356
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
++ ++ L E+ G IVF +TK++ + +A + A+ + ++GDI Q RER
Sbjct: 357 HSHKLDAMTRVLEVENYDG--IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRER 414
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
T+ A RDGR +IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG+ G AI
Sbjct: 415 TVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAI 474
Query: 445 LIYTDQQARQVKSIER 460
L T ++ ++ IE+
Sbjct: 475 LFVTPREKYMLRQIEK 490
>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 561
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 153/388 (39%), Positives = 237/388 (61%), Gaps = 10/388 (2%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+ D+ + L + +++ AL+ G + PIQ+ + P +GRD++G+A TGTGKT
Sbjct: 3 DAPDDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTA 62
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGT 209
AF +P+L+++ + + RG P LVL PTRELA QV + H L + +YGG
Sbjct: 63 AFALPVLERLAQVEK---RGDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQ 119
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI Q+R L+ GVD VV TPGR +D + R LNL ++Q VVLDEAD+ML +GFAED++ I
Sbjct: 120 PIGRQLRVLERGVDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTI 179
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATSMY 328
L P+ RQ+++FSATMPP I L ++L P + + + ++ A + +
Sbjct: 180 LAETPKQRQTVLFSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRA 239
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
KP+ +G+++ A IVF +T+ + D+L + + Y E LHG ISQ QR+R ++
Sbjct: 240 HKPAALGRVLDVEAPTA-AIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMA 298
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
R+G ++L+ATDVAARGLDV + +++Y +P+ E++VHR GR GRAG++G AI +
Sbjct: 299 RLRNGTADLLVATDVAARGLDVEQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLA 358
Query: 448 TDQQARQVKSIERDVGCRFT--QLPRIA 473
++ +K+IER R T ++P +A
Sbjct: 359 EPREHGMLKTIERVTKQRITMEKVPTVA 386
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 237/390 (60%), Gaps = 14/390 (3%)
Query: 85 DDYVAYDDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
DD D+ +E + KLD+ ++AA+ G + PIQ + M+GRD++G A
Sbjct: 89 DDTPKADEPKAEEPKNGFEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLA 148
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
+TGTGKT AF +P+L +I + R+P LVLAPTRELA QV F A L I
Sbjct: 149 QTGTGKTAAFALPVLSQI------DPQLRHPQALVLAPTRELALQVADSFQSFADHLGKI 202
Query: 204 CV---YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
V YGG Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++
Sbjct: 203 QVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNM 262
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
GF EDVE ILE P +Q +FSATMP IR ++ +YL +P V + S+ + I+
Sbjct: 263 GFQEDVERILEDTPNTKQVALFSATMPNGIRKISKQYLNDPAEVTV--KSETRTNTNITQ 320
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
+ T+ K I +++ E + IVF +TK + + LA + A+ ++ ++GDI+Q
Sbjct: 321 RYLFTAHRNKLDAITRIL-EVTEFEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQ 379
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
QRERT+ RDGR +IL+ATDVAARGLDV + + +Y++PN E++VHR GRTGRAG+
Sbjct: 380 QQRERTVDQLRDGRLDILVATDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGR 439
Query: 440 KGSAILIYTDQQARQVKSIERDVGCRFTQL 469
G AIL T ++ R ++SIER ++
Sbjct: 440 TGEAILFVTPRERRMLRSIERVTNATIEEM 469
>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
Length = 747
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 234/379 (61%), Gaps = 7/379 (1%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + + ++ EG+ + L I ++AAL G K PIQ A + ++GRD++G A+T
Sbjct: 77 DPTSGEADTEAEGIRFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQT 136
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---T 202
GTGKT AF +P L ++ + ++ +G R LVLAPTRELA QV + F A +D
Sbjct: 137 GTGKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTV 196
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+ VYGG+ Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GF
Sbjct: 197 LPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGF 256
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
AEDVE I ++ P +RQ +FSATMP IR ++ +YL NP + V A+ Y
Sbjct: 257 AEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGANTRQRYL 315
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQ 381
++ ++ L E G I F +TK + LA + ++ + ++GDI Q Q
Sbjct: 316 QVMGPHKLDALTRILEVEEFDG--VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQ 373
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RERT+ A ++GR +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G
Sbjct: 374 RERTVDALKEGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSG 433
Query: 442 SAILIYTDQQARQVKSIER 460
AIL T ++ ++SIE+
Sbjct: 434 DAILFMTPREKYLLRSIEK 452
>gi|343500286|ref|ZP_08738182.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|418480787|ref|ZP_13049842.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820665|gb|EGU55483.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|384571547|gb|EIF02078.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 648
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 227/369 (61%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEVKNLGQNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++S+ ++L++P TVD+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 LRMLRTIER 362
>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 557
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 172/452 (38%), Positives = 254/452 (56%), Gaps = 15/452 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + + VAAL+ GI++ F IQ+ + AM+G D+IGRA TGTGKTL FG+P+L+ +
Sbjct: 31 TDLGVRAETVAALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLETV 90
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALD 219
E G P LV+ PTREL QV ++ + + + + +YGG Q+ AL
Sbjct: 91 TSAAE--GADGRPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALR 148
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV+ VVGTPGR++DL+K L L V VLDEAD+ML +GFAEDVE +L LP+ RQ+
Sbjct: 149 TGVEIVVGTPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQT 208
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP I SL+ K+LK P+T+ +D + + T K ++ +++
Sbjct: 209 MLFSATMPDAIVSLSRKFLKQPMTIHAEVATDNAPSAQTKQLAYLTHSLNKIEVLARILQ 268
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ G IVF++TKR R+A + + + +HGD+ Q+ RER L AFR G+ ++L+
Sbjct: 269 AKDR-GLTIVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLV 327
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV +V +I+Y+ P +ET+VHR GRTGRAG G A+ + + A + K I
Sbjct: 328 ATDVAARGLDVRDVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTFVSWEDAPRWKII 387
Query: 459 ERDVGCRFTQLPRIAVEGGGDMYNDM-------GGRSGYGSMRDRQYADTGFD-RSSRMG 510
+ + + P +Y D+ G + R+ A+ D + G
Sbjct: 388 AKTLDLELSD-PVETYHTSDHLYTDLDIPEGAPGSLATADQTREGLSAEADIDIEGGKRG 446
Query: 511 DSGFGRSGGYRSPGSGRYGGNNSSYSGQGGGS 542
S GRSG R SG G + + + G +
Sbjct: 447 KSARGRSGARRKASSGPRGESAPKPARESGAA 478
>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
Length = 576
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 313 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 372
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 373 QIRMLRTIER 382
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 236/382 (61%), Gaps = 13/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S+ D L + + A+A+ G + PIQ + M+GRD++G A+TGTGKT
Sbjct: 53 NSANDNPQGFGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTA 112
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGG 208
AF +P+L +I N +H P LVLAPTRELA QV F A L + + +YGG
Sbjct: 113 AFALPVLSQI-DVNARH-----PQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGG 166
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++GF EDVE
Sbjct: 167 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVER 226
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL P+ +Q +FSATMP IR L+ KYL +P V + S+Q+ D I + T+
Sbjct: 227 ILADTPEEKQVALFSATMPNSIRRLSKKYLNSPAEVTV--KSEQRTNDNIKQRFLLTAHR 284
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLS 387
K +++ E IVF +TK + + +A + + YN ++GDI+Q+QRERT+
Sbjct: 285 AKLDAFTRIL-EVTDYDAMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVD 343
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + ++++++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 344 QLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFV 403
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER R ++
Sbjct: 404 TPRERRMLRSIERVTNARLEEM 425
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 231/372 (62%), Gaps = 12/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP+++KI
Sbjct: 5 AEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
K +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 65 SKNDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ+
Sbjct: 119 KKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMPP I+ L ++LK+P V ++ Q A I I +K + +LI
Sbjct: 179 MLFSATMPPNIKRLAEQFLKDPEHVSVI--PKQVSAPLIDQAYIEVPERQKFEALSRLI- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV V +++++LP E++VHR GRTGRAGK+G A T ++ + I
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 459 ERDVGCRFTQLP 470
ER R + P
Sbjct: 356 ERVTRHRIPRKP 367
>gi|375102000|ref|ZP_09748263.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374662732|gb|EHR62610.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 578
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 155/380 (40%), Positives = 234/380 (61%), Gaps = 11/380 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D L + +++ AL+ G + PIQ+A + + G D++G+A TGTGKT AF +P+L
Sbjct: 27 DFGALGLRPELLKALSDLGYEEPTPIQRAAIPTLLDGADVVGQAATGTGKTAAFSLPVLH 86
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRA 217
+I RG P LVL PTRELA QV + + L + VYGG P+ Q+R
Sbjct: 87 RIADLE----RGTEPSALVLVPTRELAAQVCEAMYRYGHHLGIRVVPVYGGQPMGRQLRN 142
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ GVD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL+R P +R
Sbjct: 143 LETGVDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDRTPADR 202
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+M+FSATMPP I + +YL+ P ++L +S A I+ + KP+ +G+
Sbjct: 203 QTMLFSATMPPRIAGMVRRYLREPRRIELSRAESMSGDAASITQTAYIVPRGHKPAALGR 262
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ A +VF +T+ + DRL M + Y E LHG + Q+QR R + R G +
Sbjct: 263 VLDIEAPEA-AVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQNQRNRVVGRLRAGTAD 321
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+++ATDVAARGLD+ + +++Y++P+ E +VHRTGR GRAG++GSAI + ++ R +
Sbjct: 322 LVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRTGRVGRAGREGSAITLAEPREHRMI 381
Query: 456 KSIERDVG--CRFTQLPRIA 473
K+IER G +LP +A
Sbjct: 382 KTIERVTGQTIPVRKLPTVA 401
>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
Length = 641
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 229/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L+++ I++AL G PIQ A + +QG D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P + Q ++FSATMPP ++++ ++L++P+TVD+ G + D ++ EK
Sbjct: 176 HAPSSAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVAQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG++G AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|375132206|ref|YP_005048614.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
Length = 632
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 229/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
+K+ N+ P +V+APTRELA QV E ++ L + +YGG I QM
Sbjct: 66 NKL-DLNQY-----KPQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DLI R L+L E VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 120 RALKSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++ + +++L++P VD+ G S+Q +A Y + + EK +
Sbjct: 180 TAQRVLFSATMPPMVKDIVDRFLRDPARVDVAG-SNQTVAKVEQQYWVVKGV-EKDEAMA 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIER 460
+++IER
Sbjct: 357 LRTIER 362
>gi|383777440|ref|YP_005462006.1| putative RNA helicase [Actinoplanes missouriensis 431]
gi|381370672|dbj|BAL87490.1| putative RNA helicase [Actinoplanes missouriensis 431]
Length = 550
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 233/378 (61%), Gaps = 12/378 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +++ AL+ G + PIQ + P + GRD++G+A TGTGKT AF +P+L ++
Sbjct: 7 ADLQLRPELLRALSDLGYEEPTPIQAEAIPPLLDGRDVLGQAATGTGKTAAFALPVLQRL 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
P LVL PTRELA QV + FH A L T + +YGG PI Q++AL+
Sbjct: 67 AGVTSP-----TPAALVLVPTRELAMQVSQAFHRYARDLGTRVVPIYGGQPIGRQLQALE 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +D I R L+LS V+ VVLDEAD+ML +GFAED+E ILE + RQ+
Sbjct: 122 RGVDVVVATPGRALDHISRGTLDLSGVRTVVLDEADEMLDMGFAEDIEAILEETAEERQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++FSATMP I ++ ++L+ P+ + + + + A + + + KP+ +G+++
Sbjct: 182 VLFSATMPGRIDAIARRHLREPVRIQMGRAEPEPGEAPLVRQSAYVVARAHKPAALGRVL 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A IVF +T+ + D+L + + E LHG +SQ R+R ++ RDGR ++L
Sbjct: 242 DVEAPTA-AIVFCRTREEVDQLTETLNGRGQRAEALHGGMSQEHRDRVVNRLRDGRADLL 300
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLD+ + +++Y LP ET+VHR GR GRAG++G+AI + ++ R VK+
Sbjct: 301 VATDVAARGLDIDRLSHVVNYSLPAAPETYVHRIGRVGRAGREGTAITLVEPREHRMVKA 360
Query: 458 IERDVGCR--FTQLPRIA 473
+ER G R ++P +A
Sbjct: 361 VERTTGQRIHLQKVPTVA 378
>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
Length = 607
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 162/361 (44%), Positives = 232/361 (64%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ LA +G S+ PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 65 SEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL----- 119
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
+ G+ + P LVLAPTRELA QV + F + P L + VYGGT Q+ AL GVD
Sbjct: 120 ESGQ-KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVD 178
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D +++ L+ S ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++FS
Sbjct: 179 VVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFS 238
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMPP IR L+ +YLK+P V + DQ+ I SI M K + Q + +
Sbjct: 239 ATMPPEIRRLSKRYLKDPAEVT-IRTKDQE-GKRIRQRSITVPMPHKLEAL-QRVLDACG 295
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK +A + A + L+GD+ Q+QRERT+ R G +IL+ATDV
Sbjct: 296 GEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDV 355
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G A+L T ++ R ++++ER
Sbjct: 356 AARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLERAT 415
Query: 463 G 463
G
Sbjct: 416 G 416
>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
Length = 632
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 229/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
+K+ N+ P +V+APTRELA QV E ++ L + +YGG I QM
Sbjct: 66 NKL-DLNQY-----KPQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DLI R L+L E VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 120 RALKSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++ + +++L++P VD+ G S+Q +A Y + + EK +
Sbjct: 180 TAQRVLFSATMPPMVKDIVDRFLRDPARVDVAG-SNQTVAKVEQQYWVVKGV-EKDEAMA 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIER 460
+++IER
Sbjct: 357 LRTIER 362
>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
Length = 647
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 229/369 (62%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ G+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 63 PLLNKL-----DLGQ-RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++S+ ++L++P T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 LRMLRTIER 362
>gi|422307071|ref|ZP_16394241.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
CP1035(8)]
gi|408624390|gb|EKK97337.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
CP1035(8)]
Length = 490
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 231/370 (62%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|375096567|ref|ZP_09742832.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374657300|gb|EHR52133.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 568
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 236/378 (62%), Gaps = 11/378 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L + +++ AL+ G + PIQ A + +QGRD++G+A TGTGKT AF +P+L ++
Sbjct: 19 AELGLRPELLRALSELGYEEPTPIQLAAIPTVLQGRDLVGQAATGTGKTAAFALPVLQRL 78
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALD 219
RG+ P LVL PTRELA QV + + L + +YGG P+ Q+RAL
Sbjct: 79 PDGE----RGKAPSALVLVPTRELAAQVCEAMYRYGHHLGARVVPIYGGQPMGRQLRALG 134
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +D + R L+L+E++ VVLDEAD+ML +GFAED+E IL+ P+ RQ+
Sbjct: 135 QGVDVVVATPGRALDHLGRGTLSLAELRTVVLDEADEMLDMGFAEDIEAILQESPEQRQT 194
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK-LADGISLYSIATSMYEKPSIIGQLI 338
M+FSAT+PP I + ++L+ P ++L +S + A I + KP+ +G+++
Sbjct: 195 MLFSATIPPRIAGMVRRHLREPARIELGRESSTRGEASLIRQSAYVVPRGHKPAALGRVL 254
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A +VF +T+ + DRL + + Y E LHG + Q QR+R ++ R G +++
Sbjct: 255 DVEAPTA-AVVFCRTREEVDRLTETLNGRGYRAEALHGGMDQPQRDRVVARLRGGTADLV 313
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLD+ + +++Y++P+ + +VHR GR GRAG++GSAI + ++ R +K+
Sbjct: 314 VATDVAARGLDIEQLTHVVNYDVPSAPDVYVHRIGRVGRAGREGSAITLAEPREHRMLKT 373
Query: 458 IERDVGCRFT--QLPRIA 473
IER G R +LP +A
Sbjct: 374 IERVTGQRLVVEKLPTVA 391
>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
Length = 601
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 162/366 (44%), Positives = 231/366 (63%), Gaps = 13/366 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 51 SEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLERL 110
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
G P LVLAPTRELA QV + F + P L+ + +YGG+ Q+ AL
Sbjct: 111 ------QGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINAL 164
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE ILE+LPQ RQ
Sbjct: 165 RRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQ 224
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++FSATMP IR L+ +YL+ P + + + K A I I K + +++
Sbjct: 225 VVLFSATMPNEIRRLSKRYLREPAEITI--KTKDKEARRIRHRCITMQNSHKLEALNRVL 282
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E G I+F +TK +A ++ A ++ L+GD+ Q+QRERT+ R G NIL
Sbjct: 283 -EAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNIL 341
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL T ++ R V +
Sbjct: 342 VATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPRERRFVGN 401
Query: 458 IERDVG 463
+ER VG
Sbjct: 402 LERAVG 407
>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
Length = 643
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 157/369 (42%), Positives = 227/369 (61%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++S+ ++L++P T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 LRMLRTIER 362
>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 590
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 236/378 (62%), Gaps = 11/378 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + ++++ AL G + PIQ+ + P ++GRD++G+A TGTGKT AF +PIL ++
Sbjct: 18 ADLALRRELLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQRM 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALD 219
G PL LVL PTRELA QV + H SL + +YGG PI Q+ AL
Sbjct: 78 EPGRSAIG----PLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALK 133
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQ 278
GVD VVGTPGRV+D I RN L L E++ VVLDEAD+ML +GFAED+E IL P RQ
Sbjct: 134 RGVDVVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQ 193
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMPP I + +L +P+ +++ ++ + + + KP+ +G+++
Sbjct: 194 TVLFSATMPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVL 253
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +T+ + D+L + + Y E LHG ++Q QR+R ++ R+G ++L
Sbjct: 254 DVESPTA-AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLL 312
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +++Y++P++ E++VHR GR GRAG++G+AI + ++ R +K+
Sbjct: 313 VATDVAARGLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYLKT 372
Query: 458 IERDVGCRFT--QLPRIA 473
IER R ++P +A
Sbjct: 373 IERVTKQRIAIEKIPTVA 390
>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 219/345 (63%), Gaps = 13/345 (3%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQV 189
+ G D++GRARTG GKTLAF +PIL+ +I + + K G GR P LVL PTRELA QV
Sbjct: 7 LDGSDLVGRARTGQGKTLAFVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTRELATQV 66
Query: 190 EKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+F + A L + C+YGG P Q L GVD VVGTPGR+ D I+R ++ S ++
Sbjct: 67 YADFDVYGGAIGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLK 126
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPL-TV 304
F VLDEAD+ML +GF EDVE+IL ++ Q+++FSAT+P W++ +++++LK L T
Sbjct: 127 FRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTA 186
Query: 305 DLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364
DLVG+ K + + + S + +I +I ++ GG+ I+FT+TK A LA +
Sbjct: 187 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLL 246
Query: 365 AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTS 424
LHGDI QSQRE TLS FR G+F L+AT+VAARGLD+ +V LII E P
Sbjct: 247 P---GARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 303
Query: 425 ETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
E ++HR+GRTGRAG G A++++ D + + IER+ G +F +
Sbjct: 304 EAYIHRSGRTGRAGNSGVAVMLF-DPRRSNISKIERESGVKFEHV 347
>gi|343514254|ref|ZP_08751334.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
gi|342800566|gb|EGU36084.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
Length = 680
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 155/369 (42%), Positives = 225/369 (60%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ Q ++FSATMPP ++++ ++L+ P+ VD+ G + D + EK
Sbjct: 177 APETAQRVLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKT 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRGNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 IRMLRTIER 362
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 163/414 (39%), Positives = 252/414 (60%), Gaps = 32/414 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + +IS+ ++ A+ G PIQ+ V+ ++G D+IG+A+TGTGKT AFGIPIL
Sbjct: 2 MTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPIL 61
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+K+ R +N ++L PTRELA QV E + + + T+ VYGG I Q++
Sbjct: 62 EKL-------KRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD VVGTPGRV+D + R L+LS++ VLDEAD+ML +GF ED+E I++ +
Sbjct: 115 QLKRGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI--I 334
RQ+++FSATMPP IR L+NKY+ +P V + + S+ + + EK + +
Sbjct: 175 RQTLLFSATMPPPIRKLSNKYMNSPEQVTI----SKSEVTAPSINQVYYKVLEKNKLDSL 230
Query: 335 GQLI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+LI +E+ G I+F +TK+ LA A+ A+ Y + LHGD++QSQR+ + FRD
Sbjct: 231 CRLIDSENTDLG--IIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDS 288
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ LIATDVAARG+DV NV +++Y++P E++VHR GRTGRAG++G A+ + T ++
Sbjct: 289 SIDFLIATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREM 348
Query: 453 RQVKSIERDVGCRF--TQLPRI--AVEGGGDMY---------NDMGGRSGYGSM 493
+ ++SIE ++ + LP + +E D++ ND G S Y ++
Sbjct: 349 KHLRSIENEIKMKIPSQNLPSVEEVIEKQQDVWKSQVIDMIENDDEGVSHYDAI 402
>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
8102]
Length = 598
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 168/388 (43%), Positives = 236/388 (60%), Gaps = 16/388 (4%)
Query: 81 QSAVDDYVAYDDSSKDE-GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
Q + D + D+ + E G D S+ ++ LA +G S+ PIQKA M GRD+
Sbjct: 28 QGSADVFTTTIDAQQPESGFD--GFGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDL 85
Query: 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-- 197
+G+A+TGTGKT AF +P+L+++ + P LVLAPTRELA QV F +
Sbjct: 86 VGQAQTGTGKTAAFALPLLERLASGQ------KTPQALVLAPTRELAMQVADSFKAYSAG 139
Query: 198 -PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
P L + VYGGT Q+ L GVD VVGTPGRV+D +++ L+ S ++ +VLDEAD+
Sbjct: 140 HPHLKVLAVYGGTDFRSQINTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADE 199
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
ML +GF +DVE ILE+LPQ RQ ++FSATMPP IR L+ +YLK+P V + DQ+
Sbjct: 200 MLRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKRYLKDPAEVT-IRTKDQE-GK 257
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHG 375
I SI M K + Q + + G I+F +TK +A + A + L+G
Sbjct: 258 RIRQRSITVPMPHKLEAL-QRVLDACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNG 316
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
D+ Q+QRERT+ R G +IL+ATDVAARGLDV + L+I+Y++P SE +VHR GRTG
Sbjct: 317 DVPQNQRERTVERLRSGSVDILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTG 376
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVG 463
RAG+ G A+L T ++ R + ++ER G
Sbjct: 377 RAGRTGEAVLFVTPRERRFINNLERATG 404
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 237/374 (63%), Gaps = 20/374 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I++AL G + PIQK + A++G D+IG+A+TGTGKT AFGIPI+ I
Sbjct: 17 LNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSI-- 74
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+EK+ R+ LV++PTREL QV +E + + + VYGG PI Q+R+L +G
Sbjct: 75 -DEKN---RHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 130
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR++D ++R ++L + F+VLDEAD+ML +GF ED+E I++ +P RQ+M+
Sbjct: 131 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 190
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--IT 339
FSATMP I S++ KY++ P V + + ++ +I YE + L I
Sbjct: 191 FSATMPRPILSISKKYMRTPKVVAIHKEI-------VTAPTIDQYYYETRDKVDGLCRIL 243
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K I+F +TK+ D L A+A + Y E LHGD+SQ+QR+R + FR + +IL+
Sbjct: 244 DTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILV 303
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+D+ N+ ++++++P E++VHR GRTGRAG G A+ T ++ RQ+K I
Sbjct: 304 ATDVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKLI 363
Query: 459 ERDVGCRFT--QLP 470
ER V + QLP
Sbjct: 364 ERSVKTKIIRGQLP 377
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 230/372 (61%), Gaps = 12/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ D+ ++ A+ G + PIQ + A+QGRDMIG+A+TGTGKT AFGIP+++KI
Sbjct: 5 AEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 65 SRSDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ+
Sbjct: 119 KKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP I+ L ++LKNP V ++ Q A I I +K + +LI
Sbjct: 179 MLFSATMPANIKRLAEQFLKNPEHVSVI--PKQVSAPLIDQAYIEVPERQKFEALSRLI- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV V +++++LP E++VHR GRTGRAGK+G A T ++ + I
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 459 ERDVGCRFTQLP 470
ER R + P
Sbjct: 356 ERVTRHRIPRKP 367
>gi|343510603|ref|ZP_08747826.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
gi|342801572|gb|EGU37032.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
Length = 679
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/369 (42%), Positives = 225/369 (60%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ Q ++FSATMPP ++++ ++L+ P+ VD+ G + D + EK
Sbjct: 177 APETAQRVLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKT 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRGNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 IRMLRTIER 362
>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953999|ref|ZP_12597040.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816267|gb|EGU51169.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 660
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 226/369 (61%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ R P ++LAPTRELA QV E ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P + Q ++FSATMPP ++S+ ++L++P T+D+ G + D + EK
Sbjct: 177 APSSAQRVLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 LRMLRTIER 362
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 230/372 (61%), Gaps = 12/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP++ KI
Sbjct: 5 AEFDLEPKVIQAITELGFEEATPIQAISIPIALQGKDMIGQAQTGTGKTAAFGIPLISKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
K +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 65 SKNDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ+
Sbjct: 119 KKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMPP I+ L ++LK+P V ++ Q A I I +K + +LI
Sbjct: 179 MLFSATMPPNIKRLAEQFLKDPEHVSVI--PKQVSAPLIEQAYIEVPERQKFEALSRLI- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV V +++++LP E++VHR GRTGRAGK+G A T ++ + I
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 459 ERDVGCRFTQLP 470
ER R + P
Sbjct: 356 ERVTRHRIPRKP 367
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 237/374 (63%), Gaps = 20/374 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I++AL G + PIQK + A++G D+IG+A+TGTGKT AFGIPI+ I
Sbjct: 12 LNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+EK+ R+ LV++PTREL QV +E + + + VYGG PI Q+R+L +G
Sbjct: 70 -DEKN---RHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR++D ++R ++L + F+VLDEAD+ML +GF ED+E I++ +P RQ+M+
Sbjct: 126 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 185
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--IT 339
FSATMP I S++ KY++ P V + + ++ +I YE + L I
Sbjct: 186 FSATMPRPILSISKKYMRTPKVVAIHKEI-------VTAPTIDQYYYETRDKVDGLCRIL 238
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K I+F +TK+ D L A+A + Y E LHGD+SQ+QR+R + FR + +IL+
Sbjct: 239 DTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILV 298
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+D+ N+ ++++++P E++VHR GRTGRAG G A+ T ++ RQ+K I
Sbjct: 299 ATDVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKLI 358
Query: 459 ERDVGCRFT--QLP 470
ER V + QLP
Sbjct: 359 ERSVKTKIIRGQLP 372
>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 405
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 239/375 (63%), Gaps = 24/375 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++G L++S++ + +L G SK IQ+ + M G+D++ +A+TGTGKT AFG+
Sbjct: 3 NQGKTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGV 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
PI++K+ N K + + L+L PTRELA QV KE E + T+ VYGG ISH
Sbjct: 63 PIVEKV---NPKQKKVQ---ALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISH 116
Query: 214 QMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G D VV GTPGRV DL++R LNL V+ VLDEAD+ML +GF +D+E I+
Sbjct: 117 QINFLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSY 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMY--- 328
LP++RQ ++FSATMP I L ++L +N T+ + D +++ I +Y
Sbjct: 177 LPEDRQILLFSATMPKEILELAEEFLNENYETIKVKPDE-------VTVEKIKQIIYRVN 229
Query: 329 --EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERT 385
+K + ++++++ + K I+FTQTK +AD LA + + +N +HGD SQ +RE
Sbjct: 230 PRDKFKKLTEVLSQN-EAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETV 288
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L FR G+ IL+ATDVAARGLD+ VDL+I+Y LP +E+++HR GRTGRAG++G+AI
Sbjct: 289 LHNFRTGKLKILVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAIS 348
Query: 446 IYTDQQARQVKSIER 460
I T + +Q+++I++
Sbjct: 349 IMTSSEDKQLQNIQK 363
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/372 (42%), Positives = 230/372 (61%), Gaps = 12/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP++ KI
Sbjct: 5 AEFDLEPKVIQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPLISKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 65 ARNDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ+
Sbjct: 119 KKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMPP I+ L ++LK+P V ++ Q A I I +K + +LI
Sbjct: 179 MLFSATMPPNIKRLAEQFLKDPEHVSVI--PKQVSAPLIEQAYIEVPERQKFEALSRLI- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV V +++++LP E++VHR GRTGRAGK+G A T ++ + I
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 459 ERDVGCRFTQLP 470
ER R + P
Sbjct: 356 ERVTRHRIPRKP 367
>gi|343505544|ref|ZP_08743114.1| cold-shock DEAD-box protein A [Vibrio ichthyoenteri ATCC 700023]
gi|342807514|gb|EGU42702.1| cold-shock DEAD-box protein A [Vibrio ichthyoenteri ATCC 700023]
Length = 687
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/369 (42%), Positives = 226/369 (61%), Gaps = 13/369 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNIAGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++++ ++L+ P+ VD+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKT 293
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q
Sbjct: 294 GVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRGNQ 353
Query: 452 ARQVKSIER 460
R +++IER
Sbjct: 354 IRMLRTIER 362
>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain-containing protein [Micromonospora
sp. L5]
gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
Length = 585
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/392 (40%), Positives = 242/392 (61%), Gaps = 21/392 (5%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ ++G+ + L + +++ AL+ G + PIQ+ + P + G+D++G+A TGTGKT A
Sbjct: 14 ADAEDGIAFADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAA 73
Query: 153 FGIPILDKIIKFNEKHGRGR-NPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGT 209
F +P+L ++ GR +P+ LVL PTRELA QV + FH L + +YGG
Sbjct: 74 FALPLLQRM-----PVGRAEGDPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQ 128
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI Q+RALD+GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E I
Sbjct: 129 PIGRQLRALDHGVDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAI 188
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIA 324
LE P RQ+++FSATMP I L ++L +P+ + + + ++ +A S Y +A
Sbjct: 189 LEHAPAGRQTVLFSATMPARIDGLARQHLTDPVRIRI--ERERPVAGEAPRVRQSAYIVA 246
Query: 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRE 383
+ KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+
Sbjct: 247 RA--HKPAALGRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRD 303
Query: 384 RTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSA 443
R + R G ++L+ATDVAARGLDV + +++Y++P+ E++VHR GR GRAG++G A
Sbjct: 304 RVMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVA 363
Query: 444 ILIYTDQQARQVKSIERDVGCRFT--QLPRIA 473
I + ++ R +K+IER G R ++P +A
Sbjct: 364 ITLAEPREHRMLKTIERVTGQRIAIDKIPTVA 395
>gi|385653332|ref|ZP_10047885.1| superfamily II DNA and RNA helicase, partial [Leucobacter
chromiiresistens JG 31]
Length = 608
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 237/383 (61%), Gaps = 23/383 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + + L ++ +++ A+ G IQ A + ++G D++G A+TGTGKT AF +P
Sbjct: 16 ERITFADLGLAPEVLRAVTDVGYETPSAIQAATIPTLLEGADVVGLAQTGTGKTAAFALP 75
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISH 213
IL +I G+G P LVLAPTRELA QV + F A P + + VYGG
Sbjct: 76 ILSRITP-----GQG-VPQALVLAPTRELALQVCEAFESYAAHLPEVHLLPVYGGQAYGQ 129
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++D +KR +L+L++++++VLDEAD+ML +GFAEDVE IL
Sbjct: 130 QLSALRRGVDIVVGTPGRIMDHLKRGSLDLTQIKYLVLDEADEMLKMGFAEDVETILADT 189
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
PQ +Q +FSATMP IR ++ +YL +P + + G + S T Y S
Sbjct: 190 PQEKQVALFSATMPAQIRRISQQYLNDPREIKIAGKTQTS--------STITQRYNVVSY 241
Query: 334 IGQL-----ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
+L I E IVFT+T+ D++++A + A+ Y+ ++GDI Q+QRERT+
Sbjct: 242 TQKLDALTRILEVEDFDAMIVFTRTRGDSEQVAEKLRARGYSAAAINGDIPQAQRERTVQ 301
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+ +DG+ +IL+ATDVAARGLDV + +++Y+LP +E++VHR GRTGRAG+ G AI
Sbjct: 302 SLKDGKLDILVATDVAARGLDVERISHVLNYDLPIDTESYVHRIGRTGRAGRTGDAISFV 361
Query: 448 TDQQARQVKSIERDVGCRFTQLP 470
T ++ R +K+IE+ TQ+P
Sbjct: 362 TPREQRLLKAIEKATKQPLTQMP 384
>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
Length = 619
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 228/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFRDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL------DLDQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV+ VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVIVGTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P + Q ++FSATMPP ++S+ ++L++P+TVD+ G + D + EK
Sbjct: 176 HSPDSAQRVLFSATMPPMLKSICERFLRSPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP ++ + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 KGVIDILVATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 405
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 240/375 (64%), Gaps = 24/375 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++G L++S++ + +L G SK IQ+ + M G+D++ +A+TGTGKT AFG+
Sbjct: 3 NQGKTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGV 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
PI++K+ N K + + L+L PTRELA QV KE E + T+ VYGG ISH
Sbjct: 63 PIVEKV---NPKQKKVQ---ALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISH 116
Query: 214 QMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G D VV GTPGRV DL++R LNL V+ VLDEAD+ML +GF +D+E I+
Sbjct: 117 QINFLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSY 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMY--- 328
LP++RQ+++FSATMP I L ++L +N T+ + D +++ I +Y
Sbjct: 177 LPEDRQNLLFSATMPKEILDLAEEFLNENYETIRVKPDE-------VTVEKIKQIIYRVN 229
Query: 329 --EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERT 385
+K + ++++++ + K I+FTQTK +AD LA + + +N +HGD SQ +RE
Sbjct: 230 PRDKFKKLTEVLSQN-EAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETV 288
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
L FR G+ IL+ATDVAARGLD+ VDL+I+Y LP +E+++HR GRTGRAG++G+AI
Sbjct: 289 LHNFRTGKLKILVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAIS 348
Query: 446 IYTDQQARQVKSIER 460
I T + +Q+++I++
Sbjct: 349 IMTPSEDKQLQNIQK 363
>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 624
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 162/362 (44%), Positives = 228/362 (62%), Gaps = 15/362 (4%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ LA +G S PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 79 SEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL----- 133
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
+ G+ + P LVLAPTRELA QV F A P L + VYGGT Q+ L GVD
Sbjct: 134 ESGQ-KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVD 192
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D +++ L+ S + +VLDEAD+ML +GF +DVE ILE+LP+ RQ ++FS
Sbjct: 193 VVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFS 252
Query: 284 ATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
ATMPP IR L+ +YL +P V + D D KL I +I M K + Q + +
Sbjct: 253 ATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL---IRQRAITVPMSHKLEAL-QRVLDAC 308
Query: 343 KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
G I+F +TK +A + A + L+GD+ Q+QRERT+ R G ++L+ATD
Sbjct: 309 GGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATD 368
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461
VAARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G A+L T ++ R ++++ER
Sbjct: 369 VAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERA 428
Query: 462 VG 463
G
Sbjct: 429 TG 430
>gi|405978792|gb|EKC43154.1| Nucleolar RNA helicase 2 [Crassostrea gigas]
Length = 671
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 222/378 (58%), Gaps = 33/378 (8%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +S V L +R ++ LFPIQ + G D+IG+ARTGTGKT+
Sbjct: 156 DFSNFRLSDVTVEKLKKRNVNYLFPIQYKTFDHVYNGEDVIGQARTGTGKTV-------- 207
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
+ + PTRELAKQV EF + L C YGGTP Q+RA+
Sbjct: 208 -----------------IAMVPTRELAKQVSDEFESISDGLSVACFYGGTPYEKQIRAIR 250
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----- 274
G+D +VGTPGR+ D I++ L+ V+ VVLDE D+ML +GFAEDVE I+
Sbjct: 251 SGIDVLVGTPGRIKDHIEKGNLDFKGVRHVVLDEVDRMLDMGFAEDVETIISSAYNNGSG 310
Query: 275 QNRQSMMFSATMPPWIRSLTNKYL-KNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPS 332
+N Q+++FSAT+P W+ KY+ K+ L V LV + + + + +I +S +++PS
Sbjct: 311 ENPQTLLFSATLPSWVHDTARKYMNKDKLAKVSLVNSQENRTSTTVQHLAIRSSFWDRPS 370
Query: 333 IIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+IG ++ ++ K G+ I+F +TK++AD L+ + + LHGDI Q +RE L +FR+
Sbjct: 371 VIGDVLQVYSGKNGRAIIFNETKKEADNLSCSEYIKQDAHVLHGDIPQEKRETVLKSFRE 430
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+FN+L+ TDVAARGLD+P VDL+I P ++++HR+GRTGRAGK G I Y ++
Sbjct: 431 GKFNVLLTTDVAARGLDIPEVDLVIQCNPPEDVDSYIHRSGRTGRAGKNGVCICFYKPEE 490
Query: 452 ARQVKSIERDVGCRFTQL 469
++ ++E +F ++
Sbjct: 491 EMKLANVEYRAKIKFKKV 508
>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
Length = 525
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/395 (38%), Positives = 238/395 (60%), Gaps = 34/395 (8%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-- 163
I+Q IV L +GI + IQ P +G D+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 7 INQKIVDFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTLAFALPLVEKLYKNM 66
Query: 164 -------------------FNEKH------GRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
+E H + P LVL PTREL+KQVE F E +
Sbjct: 67 ESKKKIIKNKSNEINSIQHLSEGHKNENTDSMDKYPYILVLEPTRELSKQVETTFKEISQ 126
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
+ + + +YGG ++Q L G+ + GTPGR+ID I++ L+L +++VVLDEAD+
Sbjct: 127 FYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEADE 186
Query: 257 MLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
ML++GF D+E IL + ++ Q +++SAT P WI+ +++KYLKNP+ +D++ ++ K +
Sbjct: 187 MLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTS 245
Query: 316 DGISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEP 372
I +I T + EK ++ +I + GG+ I+FT+TK +AD L + +Y
Sbjct: 246 KTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFNYLTFSV 305
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTG 432
LHG+I+QS RE T+ FR G F +LIATD+AARGLD+ NVDL+I P ++HR+G
Sbjct: 306 LHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAIYIHRSG 365
Query: 433 RTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467
RTGRA KKG +I++++++ V IE++ G +FT
Sbjct: 366 RTGRANKKGMSIVLFSNEDKNDVIKIEKNCGIKFT 400
>gi|343497470|ref|ZP_08735537.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
gi|342818317|gb|EGU53184.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
Length = 621
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/370 (41%), Positives = 228/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L ++ I+++L G PIQ A + ++G+D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNDAILSSLEGMGFVSPTPIQAAAIPHLLEGKDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL------DLSQRKPQAIVLAPTRELAIQVAAEMKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P Q ++FSATMPP ++++ ++L+NP +D+ G + D + EK
Sbjct: 176 QAPDTAQRVLFSATMPPMLKNIVERFLRNPEHIDVAGKN--HTVDKVEQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|423351179|ref|ZP_17328830.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
gi|404386815|gb|EJZ81953.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
Length = 437
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 232/374 (62%), Gaps = 5/374 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ++ +IV AL GI + F IQK L A+ G+D+IG+ARTG GKTLA+G+P+LD++
Sbjct: 18 AELGVAAEIVDALNEGGIERTFAIQKLALPLALDGKDIIGQARTGMGKTLAYGVPLLDRV 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ P LV+APTRELA+QV + +A L+ +C+YGG + Q+ L
Sbjct: 78 FDSADVTAPDGTPRALVVAPTRELARQVGTDLENAARGLPLEVLCIYGGQDFAPQLEGLK 137
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
GVD VVGTPGR++DL +R AL+L V+ VVLDEAD+ML +GF DV +LE P + RQ
Sbjct: 138 KGVDVVVGTPGRLLDLNRRGALDLGGVEIVVLDEADEMLDLGFLPDVTKLLELAPAERRQ 197
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP I L + P+ + ++ +L + +K ++I +++
Sbjct: 198 TLLFSATMPGSILGLARSVMTKPVHIRAEAPTEDQLHASTKQVVFQSHKLDKKAVIARIL 257
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+G K I+F +TKR A +A + + +HGD+ QS RER+L+A RDG ++L
Sbjct: 258 QAEGRG-KTIMFARTKRSTALAAEDLAERGFAVAAVHGDLPQSARERSLAALRDGSCDVL 316
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLD+ +V +I+YE+P +T+VHR GRTGRAGK G+A+ + + +
Sbjct: 317 VATDVAARGLDIDDVTHVINYEVPTDPQTYVHRIGRTGRAGKSGTAVTLVGYDELHAWRV 376
Query: 458 IERDVGCRFTQLPR 471
I+ ++G + PR
Sbjct: 377 IDEELGLGNPEPPR 390
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 245/404 (60%), Gaps = 19/404 (4%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
A+S A D+ + +E ++ LD I + ++ ALA G PIQ A + P + G
Sbjct: 7 AESTTTAVTATDEQAGNENEPVTFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGN 66
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +P+L KI G R P LVLAPTRELA QV + F + A
Sbjct: 67 DVVGLAQTGTGKTAAFAVPVLSKI------DGESRTPQALVLAPTRELALQVSEAFGKYA 120
Query: 198 ---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
P++ + +YGG Q+ L G +VGTPGRVID +++ L+LS ++F+VLDEA
Sbjct: 121 VHMPNITVLPIYGGQSYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEA 180
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE IL P+ +Q +FSATMPP IR + KYL +P+ + + K
Sbjct: 181 DEMLTMGFQEDVERILADTPEFKQVALFSATMPPAIRKIAKKYLHDPVEISV----KAKT 236
Query: 315 ADG--ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCE 371
A G I+ + + K + +L+ G I+F +TK + LA + A+ +
Sbjct: 237 ATGSNITQRYLQVAHQRKLDALTRLLEVEEFDG-MIIFVRTKSATEELAEKLRARGHAAA 295
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431
++GDI Q+QRERT+ +DG+ +IL+ATDVAARGLDV + +++Y++P+ +E++VHR
Sbjct: 296 AINGDIVQAQRERTIGQLKDGKVDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRI 355
Query: 432 GRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
GRTGRAG+KG A+L T ++ +++IE+ T++ +VE
Sbjct: 356 GRTGRAGRKGDALLFVTPRERHLLRAIEKATRQPLTEIGLPSVE 399
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/372 (42%), Positives = 230/372 (61%), Gaps = 12/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ ++ ++ A+ G + PIQ + A+QGRDMIG+A+TGTGKT AFGIP++ KI
Sbjct: 5 AEFNLEPKVLEAITELGFEEATPIQSQSIPLALQGRDMIGQAQTGTGKTAAFGIPLISKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ ++K L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 65 SRNDDKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ+
Sbjct: 119 KKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMPP I+ L ++LKNP V ++ Q A I I +K + +LI
Sbjct: 179 MLFSATMPPNIKRLAEQFLKNPEHVSVI--PKQVSAPLIDQAYIEVPERQKFEALSRLI- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV V +++++LP E++VHR GRTGRAGK+G A T ++ + I
Sbjct: 296 ATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 459 ERDVGCRFTQLP 470
ER R + P
Sbjct: 356 ERVTRHRIARKP 367
>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase [Salinispora tropica CNB-440]
gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
Length = 579
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 235/389 (60%), Gaps = 11/389 (2%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+ S+ DE L + +++AALA G + PIQ+ + P + GRD++G+A TGTGKT
Sbjct: 13 EPSTDDEATAFVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKT 72
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGG 208
AF +P+L ++ NP+ LVL PTRELA QV + FH L + +YGG
Sbjct: 73 AAFALPMLQRMPANRSTT----NPVALVLVPTRELAVQVSEAFHRYGKELGARVLPIYGG 128
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
PI Q+RALD GVD VV TPGR +D I R L L +V VVLDEAD+ML +GFAED+E
Sbjct: 129 QPIGRQLRALDAGVDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEA 188
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK-LADGISLYSIATSM 327
ILE P+ RQ+++FSATMP I + +L +P+ + + + A + + S
Sbjct: 189 ILEHAPEQRQTVLFSATMPARIDGMARAHLTDPIRILIAREKPVAGEAPRVRQSAYLVSR 248
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R +
Sbjct: 249 AHKPAALGRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVM 307
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
R G ++L+ATDVAARGLDV + +++Y++P+ E++VHR GR GRAG++G AI +
Sbjct: 308 GRLRAGTADLLVATDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITL 367
Query: 447 YTDQQARQVKSIERDVGCRFT--QLPRIA 473
+ R +K+IER G R T ++P +A
Sbjct: 368 AEPRAHRMLKTIERVTGQRITIDKIPTVA 396
>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
Length = 566
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 238/382 (62%), Gaps = 19/382 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +++AAL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +P+L ++
Sbjct: 18 ADLGLRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQRM 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALD 219
++ G +P+ LVL PTRELA QV + FH L + +YGG PI Q+RALD
Sbjct: 78 ---PDERPTG-DPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALD 133
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE P+ RQ+
Sbjct: 134 NGVDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQT 193
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIATSMYEKPSII 334
++FSATMP I + +L +P+ + + +Q +A S Y +A + KP+ +
Sbjct: 194 VLFSATMPSRIDGMARAHLTDPVRILIA--REQPVAGEAPRVRQSAYLVARA--HKPAAL 249
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R + R G
Sbjct: 250 GRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGT 308
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
++L+ATDVAARGLDV + +++Y++P+ E++VHR GR GRAG++G AI + ++ R
Sbjct: 309 ADLLVATDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHR 368
Query: 454 QVKSIERDVGCRFT--QLPRIA 473
+K+IER G R T ++P +A
Sbjct: 369 MLKTIERVTGQRITIDKIPTVA 390
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 229/375 (61%), Gaps = 13/375 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +IS++I AL + G + IQ+ + A +G+D+IG+++TGTGKT AFGIPILD I
Sbjct: 5 TEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDNI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
++ N + LV+ PTRELA QV EF + + + I VYGG I Q++ L
Sbjct: 65 LQNNNHQIQA-----LVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLK 119
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
V V+GTPGR++D I+R + L V+FVVLDEAD+ML +GF ED+E IL + RQ+
Sbjct: 120 KKVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQT 179
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP I SL+ KYLKNP + + + D I + +K ++ +++
Sbjct: 180 MLFSATMPAEILSLSKKYLKNPEMIRVKNKT--MTVDQIEQIYMKVKNADKSEVLSRILQ 237
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K I+F TK+ D L M + Y E LHGD+ Q +R+ L+ FR+G+ ++LI
Sbjct: 238 LES-SKKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLI 296
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ +VDL+I+Y+LP E +VHR GRTGRAG G + + +++ I
Sbjct: 297 ATDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRRI 356
Query: 459 ERDVGCRFTQ--LPR 471
E+ C+ + +PR
Sbjct: 357 EKYAKCKIKEESIPR 371
>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 607
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 232/361 (64%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ LA +G S+ PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 65 SEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL----- 119
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
+ G+ + P LVLAPTRELA QV + F + P L + VYGGT Q+ AL GVD
Sbjct: 120 ESGQ-KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVD 178
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D +++ L+ S ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++FS
Sbjct: 179 VVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFS 238
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMPP IR L+ +YLK+P V + DQ+ I SI M K + +++
Sbjct: 239 ATMPPEIRRLSKRYLKDPAEVT-IRTKDQE-GKRIRQRSITVPMPHKLEALQRVLDACGS 296
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK +A + A + L+GD+ Q+QRERT+ R G +IL+ATDV
Sbjct: 297 EG-VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDV 355
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G A+L T ++ R ++++ER
Sbjct: 356 AARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLERAT 415
Query: 463 G 463
G
Sbjct: 416 G 416
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 229/373 (61%), Gaps = 16/373 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS+ AL R G + PIQ+ + M+GRD+IG+A+TGTGKT AFGIPI++K+
Sbjct: 30 SELNISETTQNALLRMGFEEATPIQEGTITFGMEGRDVIGQAQTGTGKTAAFGIPIIEKL 89
Query: 162 IKFNEKHGRGRNPLC--LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
+NP LV+APTRELA QV +E ++ + VYGG I Q+RA
Sbjct: 90 --------DPKNPAVQALVIAPTRELAIQVSEEIYKVGYGSRAKVLSVYGGQEIGRQIRA 141
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L + VVGTPGR++D I R L L VQ +VLDEAD+ML++GF ED+ IL +P R
Sbjct: 142 LRNNPNIVVGTPGRILDHINRKTLKLDNVQTLVLDEADEMLNMGFIEDINTILASVPAER 201
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMP IR + ++KNP V + S + + I + + EK ++ +L
Sbjct: 202 QTLLFSATMPAPIRKIAETFMKNPEIVKI--KSKEMTVENIEQFFVKAHEREKFDVLSRL 259
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + IVF +TKR D LAHA++ + Y E +HGD++Q++R L F+D + ++
Sbjct: 260 LNVH-QPELAIVFGRTKRRVDELAHALSIRGYLAEGIHGDLTQAKRMSVLRQFKDNKIDV 318
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G AI T ++ ++
Sbjct: 319 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGMAITFVTPREMGYLR 378
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 379 IVEETTKKRMTPL 391
>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 585
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 241/391 (61%), Gaps = 19/391 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ ++G+ + L + +++ AL+ G + PIQ+ + P + G+D++G+A TGTGKT A
Sbjct: 14 ADAEDGIAFADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAA 73
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTP 210
F +P+L ++ G +P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 74 FALPLLQRM-PVGRADG---DPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQP 129
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RALD+GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E IL
Sbjct: 130 IGRQLRALDHGVDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAIL 189
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIAT 325
E P RQ+++FSATMP I L ++L +P+ + + + ++ +A S Y +A
Sbjct: 190 EHAPAGRQTVLFSATMPARIDGLARQHLTDPVRIRI--ERERPVAGEAPRVRQSAYIVAR 247
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
+ KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R
Sbjct: 248 A--HKPAALGRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDR 304
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ R G ++L+ATDVAARGLDV + +++Y++P+ E++VHR GR GRAG++G AI
Sbjct: 305 VMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAI 364
Query: 445 LIYTDQQARQVKSIERDVGCRFT--QLPRIA 473
+ ++ R +K+IER G R ++P +A
Sbjct: 365 TLAEPREHRMLKTIERVTGQRIAIDKIPTVA 395
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 233/367 (63%), Gaps = 7/367 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + ++AAL G K PIQ+ + ++G D++G A+TGTGKT AF +P
Sbjct: 65 GVRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPA 124
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + + +G R+ LVLAPTRELA QV + F A ++ + +YGG+P Q
Sbjct: 125 LSRMAELADVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQ 184
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE ILE P
Sbjct: 185 LAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTP 244
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++Q +FSATMP IR + +YL +P + + + A+ Y ++ ++
Sbjct: 245 DSKQVALFSATMPNSIRKIAQQYLNDPTEIRVKAKTTTS-ANISQRYMQVMHSHKLDAMT 303
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+ A RDGR
Sbjct: 304 RVLEVENYDG--IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGR 361
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG++G+AIL T ++
Sbjct: 362 IDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKY 421
Query: 454 QVKSIER 460
++ IE+
Sbjct: 422 MLRQIEK 428
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/424 (39%), Positives = 243/424 (57%), Gaps = 22/424 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + DI AL GI FPIQ L A+ G D+IG+ARTGTGKT AFG+P+L ++
Sbjct: 23 LGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQRV-- 80
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ + G + P LV+ PTRELA QV + ++ +D VYGG Q+ AL G
Sbjct: 81 -HTQPGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRKG 139
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VVGTPGR++DL+K+ L LSEV +VLDEAD+ML +GF D+E IL + P RQ+M+
Sbjct: 140 VDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTML 199
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I +L+ KYL+ P + D + ++ + T +K ++ +L+
Sbjct: 200 FSATMPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVFRTHPLDKLEMLARLLQAR 259
Query: 342 AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ G +VF QTKR+ ++ + + + +HGD+ Q QRER L AFR+G+ ++L+AT
Sbjct: 260 NR-GLTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVLVAT 318
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARG+DV +V +++YE P+ +T+ HR GRTGRAG+ G+A+ Q+ + K I R
Sbjct: 319 DVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQELLRWKLINR 378
Query: 461 DVGCRFTQLPR-------------IAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSS 507
+G F P I + G + + R+G + +TG R+S
Sbjct: 379 ALGLPFADPPETYSTSPHFFDALDIPRDAKGVLAKEEQDRAGLAAEEVEDIGETG--RAS 436
Query: 508 RMGD 511
R D
Sbjct: 437 RTKD 440
>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
Length = 634
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 226/370 (61%), Gaps = 13/370 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF
Sbjct: 2 QDSSIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ + R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL------NLDQRKPQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P+ Q ++FSATMPP ++ + +++L+ P VD+ G + D + EK
Sbjct: 176 HAPETAQRVLFSATMPPMLKKIVDRFLREPEYVDVAGKN--HTVDKVEQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G +IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+
Sbjct: 293 QGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTN 352
Query: 451 QARQVKSIER 460
Q R +++IER
Sbjct: 353 QIRMLRTIER 362
>gi|427391479|ref|ZP_18885885.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732122|gb|EKU94934.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 567
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 201/550 (36%), Positives = 297/550 (54%), Gaps = 45/550 (8%)
Query: 85 DDYVAYDDSS-KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
DD VA ++++ ++E + +S+++ ALA GI FPIQ L A+ D+IG+A
Sbjct: 15 DDAVAVENATGQEETRTFADFGVSEEVTRALADEGIIHPFPIQALTLPVALDRHDIIGQA 74
Query: 144 RTGTGKTLAFGIPILDKII--------KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195
+TGTGKTL FGIP+L+ I K EK+ +G P L + PTRELAKQV E
Sbjct: 75 KTGTGKTLGFGIPMLENTIGPGEEGWEKIPEKN-QGL-PQGLAILPTRELAKQVANELRM 132
Query: 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+A S+ + +YGG Q AL G + VVGTPGR+IDL++ +L L V+ +VLDE
Sbjct: 133 AAAHRSVRIVDIYGGRAYEPQQEALRRGAEIVVGTPGRIIDLMRHGSLRLDHVKTLVLDE 192
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
AD+ML +GF EDVE IL R+P+ R +M+FSATMP + S+ +Y+ P + D
Sbjct: 193 ADEMLDLGFLEDVETILSRVPERRHTMLFSATMPGPVISMARRYMSKPTHIRASAPGD-- 250
Query: 314 LADGISLYSIATSMY-----EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKS 367
D ++ +I +Y K +I +++ A+G G+ ++FT+TKR A RLA + +
Sbjct: 251 --DTHTVKNIRQIVYRAHALNKDEVIARIL--QARGRGRTLIFTRTKRSAARLAEDLERR 306
Query: 368 -YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSET 426
+ LHGD+ Q RE+ L AFR+G+ ++L+ATDVAARG+DV +V +I+Y+ P +
Sbjct: 307 GFATGALHGDLGQGAREQALHAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKI 366
Query: 427 FVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGG 486
+VHR GRTGRAG KG+A+ + K I++ +G + P +Y+D+
Sbjct: 367 YVHRIGRTGRAGNKGTAVTFVDWDDVTRWKMIDKQLGLGMPE-PVETYHTSEHLYSDLDI 425
Query: 487 RSGYGS-MRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGN-NSSYSGQGGGSSS 544
G + Q G D G + R+ R+G S SG G +SS
Sbjct: 426 PEAAGPRLPASQRTAAGLDAEEVEDLEGPHK---RRNAKGSRHGARAKGSRSGHSGRASS 482
Query: 545 GGFGSNANRSGKFGGPGFSRSGGWGESTKSDRS-------SAFGDTG---SRQSGRFGDL 594
G S RS + G P RS GES S RS +A +TG ++ SG G
Sbjct: 483 GRASSGKTRS-RAGSP--KRSSRAGESRDSKRSEPRAARRTASENTGGHKAKTSGAKGQS 539
Query: 595 GDNHSSRSSG 604
G ++++ G
Sbjct: 540 GQTRNAKAQG 549
>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 574
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/393 (41%), Positives = 242/393 (61%), Gaps = 19/393 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+ S+ DE L + +++AALA G + PIQ+ + P + GRD++G+A TGTGKT
Sbjct: 8 EPSTDDEATAFVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKT 67
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGG 208
AF +P+L ++ + G +P+ LVL PTRELA QV + FH L T + +YGG
Sbjct: 68 AAFALPLLQRM-SVDRPTG---DPVALVLVPTRELAVQVSEAFHRYGKELGTRVLPIYGG 123
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
PI Q+RALD GVD VV TPGR +D I R L L +V VVLDEAD+ML +GFAED+E
Sbjct: 124 QPIGRQLRALDSGVDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEA 183
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSI 323
ILE P+ RQ+++FSATMP I + +L +P+ + + +Q +A S Y +
Sbjct: 184 ILEHAPEQRQTVLFSATMPARIDGMARAHLTDPIRILIA--REQPVAGEAPRVRQSAYLV 241
Query: 324 ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQR 382
A + KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR
Sbjct: 242 ARA--HKPAALGRVLDIESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQR 298
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
+R + R G ++L+ATDVAARGLDV + +++Y++P+ E++VHR GR GRAG++G
Sbjct: 299 DRVMGRLRAGTADLLMATDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGV 358
Query: 443 AILIYTDQQARQVKSIERDVGCRFT--QLPRIA 473
AI + + R +K+IER G R T ++P +A
Sbjct: 359 AITLAEPRAHRMLKTIERVTGQRITIDKIPTVA 391
>gi|359778006|ref|ZP_09281280.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
gi|359304860|dbj|GAB15109.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
Length = 697
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/370 (41%), Positives = 232/370 (62%), Gaps = 13/370 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 52 GVRFTDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 111
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+ Q
Sbjct: 112 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 171
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I ++ P
Sbjct: 172 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTP 231
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKP 331
++RQ +FSATMP IR ++ +YL NP + + K + G ++ Y ++
Sbjct: 232 ESRQVALFSATMPSQIRRMSKQYLNNPAEISV----KSKTSTGTNIKQRYLQVMGPHKLD 287
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L E G I F +TK + LA + ++ + ++GDI Q QRERT+ A +
Sbjct: 288 AMTRILEVEEFDG--VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALK 345
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+GR +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G AIL T +
Sbjct: 346 EGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRAGDAILFMTPR 405
Query: 451 QARQVKSIER 460
+ +++IE+
Sbjct: 406 EKYLLRAIEK 415
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/395 (39%), Positives = 230/395 (58%), Gaps = 15/395 (3%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ S G S D+ + V AL +GI+ LFP+Q E M+G +++ +ARTG+G
Sbjct: 40 APNNGSALAGRPFSDFDLLPNTVEALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSG 99
Query: 149 KTLAFGIPILDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
KTLAFGIPI++K+ K NE+ RGR P ++ PTRELA QV + +
Sbjct: 100 KTLAFGIPIVEKLARMTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTAL 159
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF +D
Sbjct: 160 YGGVAYSTQERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDD 219
Query: 266 VEVILERLPQN---------RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+++ + Q+++FSAT+P W+ + + K +D+VG + A+
Sbjct: 220 IELLLQKVAEQNGSTEGNPTHQTLLFSATVPEWVHTCSFIPRKKEF-IDMVGQGTMRAAN 278
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I Y E ++ L+ ++ + G+ +VFT TK++ L+ K + + LHG
Sbjct: 279 TIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTK-LDSQCLHG 337
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
D+ Q QRE T+ +FRD +F++LIATDVAARGLD+P VDL+I P + F+HR GRTG
Sbjct: 338 DMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTG 397
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470
RAG+KG +L++ + V+ IER +F LP
Sbjct: 398 RAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLP 432
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/395 (39%), Positives = 231/395 (58%), Gaps = 15/395 (3%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ S G S D+ + V AL +GI+ LFP+Q E M+G +++ +ARTG+G
Sbjct: 40 APNNGSALTGRPFSDFDLLPNTVEALKSQGITTLFPVQALTYEAIMKGSNVLVQARTGSG 99
Query: 149 KTLAFGIPILDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
KTLAFGIPI++K+ K NE+ RGR P ++ PTRELA QV + +
Sbjct: 100 KTLAFGIPIVEKLARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTAL 159
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF +D
Sbjct: 160 YGGVAYSTQERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDD 219
Query: 266 VEVILERLPQN---------RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+++ + Q+++FSAT+P W+ + + +N +D+VG + A+
Sbjct: 220 IELLLQKVAEQNGSTEGNPTHQTLLFSATVPEWVHTCSF-IPRNKEFIDMVGQGTMRAAN 278
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I Y E ++ L+ ++ + G+ +VFT TK++ L+ K + + LHG
Sbjct: 279 TIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTK-LDSQCLHG 337
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
D+ Q QRE T+ +FRD +F++LIATDVAARGLD+P VDL+I P + F+HR GRTG
Sbjct: 338 DMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTG 397
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470
RAG+KG +L++ + V+ IER +F LP
Sbjct: 398 RAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLP 432
>gi|352093689|ref|ZP_08954860.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680029|gb|EHA63161.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 602
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 231/366 (63%), Gaps = 13/366 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ S+ ++ LA +G + PIQK + M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 51 SEFGFSEALLKTLADKGYKEPSPIQKEAIPELMLGRDLVGQAQTGTGKTAAFALPLLERL 110
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
G P LVLAPTRELA QV + F + P L+ + +YGG+ Q+ AL
Sbjct: 111 ------QGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINAL 164
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE ILE+LP+ RQ
Sbjct: 165 RRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPEERQ 224
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++FSATMP IR L+ +YL+ P + + + +K A I I K + +++
Sbjct: 225 VVLFSATMPNEIRRLSKRYLREPAEITI--KTKEKEARRIRHRCITMQNSHKLEALNRVL 282
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E G I+F +TK +A ++ A ++ L+GD+ Q+QRERT+ R G NIL
Sbjct: 283 -EAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNIL 341
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL T ++ R V +
Sbjct: 342 VATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFITPRERRFVGN 401
Query: 458 IERDVG 463
+ER VG
Sbjct: 402 LERAVG 407
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 230/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + N++L+NP+ V + +S Q + I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRI--ESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERSTNSRISPM 370
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 230/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + N++L+NP+ V + +S Q + I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRI--ESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERSTNSRISPM 370
>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 459
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 224/375 (59%), Gaps = 22/375 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + IV +L GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L +I+
Sbjct: 9 LGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQRILD 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA----PSLDTICVYGGTPISHQMRALD 219
+ +GR P LV+ PTRELA QV + ++ PS+ + +YGG Q+RAL
Sbjct: 69 -EQSREQGRAPRALVVVPTRELAHQVADDLRVASRTFSPSI--VTIYGGKDFEPQIRALK 125
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR++DL R LN S + V DEAD+ML +GF DVE I+ LP RQ+
Sbjct: 126 DGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAKRQT 185
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-------EKPS 332
M+FSATMP + +L +Y+ P + SD S S+ T Y +K
Sbjct: 186 MLFSATMPGQVIALARRYMTQPTHIRATQASD------TSTTSVNTKQYVYRAHSMDKTE 239
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++G+++ + G+ I+F +TKR ADRL + A+ + + LHGD++Q RE+ L FRD
Sbjct: 240 LVGRILRAEGR-GRTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRD 298
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G ++L+ATDVAARG+D+ +V +I+Y+ P +T+VHR GRTGRAG G A+ + +
Sbjct: 299 GTTDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLIDWED 358
Query: 452 ARQVKSIERDVGCRF 466
+ K I R +G F
Sbjct: 359 VAKWKLINRTLGLDF 373
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 225/368 (61%), Gaps = 13/368 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + ++L + ++I A+A G + PIQ + ++G D+IG+A+TGTGKT AF IP
Sbjct: 2 EITNFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L+KI +++ +VL PTRELA QV +E + A L T+ +YGG PI
Sbjct: 62 LLEKIDPSDKRLQ------AIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRVID I R L S V+ VV+DEAD+ML +GF ED+E IL
Sbjct: 116 QIKALKGGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSST 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
PQ RQ+ +FSATMP I LT KY K P+ + +V + + I + I T K +
Sbjct: 176 PQERQTSLFSATMPKAILELTQKYQKEPVHIKVV--RKELTVNNIKQFYIETRKSNKLEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + +VFT TK+ AD L + A+ Y + LHGD+ Q QR+ + FR G
Sbjct: 234 LTRLIDVY-NPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+IL+ATDVAARG+DV +V+ +I+YELP E +VHR GRTGRAG+ G A ++
Sbjct: 293 TIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREM 352
Query: 453 RQVKSIER 460
R++K IER
Sbjct: 353 RKLKDIER 360
>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 482
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 232/384 (60%), Gaps = 10/384 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I A L R+GI+ F IQ+ L A+QG D+IG+ARTG+GKTLAFGIP++ + + ++
Sbjct: 4 EICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKDRD 63
Query: 169 ----GRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGV 222
+G+ P L++APTRELA QV E + L + VYGG Q+ AL+ GV
Sbjct: 64 YIDLPQGK-PQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKGV 122
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR+IDL R L+LS V +VLDEAD+ML +GF DVE ++ P+ RQ+++F
Sbjct: 123 DIVVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLLF 182
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I +L Y+++P+ + ++++ + + +KP +IG+L+ +
Sbjct: 183 SATMPGAIVALARSYMRHPMNIRAESAAERETVPATAQFVYQAHDLDKPEMIGRLL-QCE 241
Query: 343 KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
K +VF +TKR A R+A +A + + PLHGD+ Q+ RER + FRDG+ +L+ATD
Sbjct: 242 DHDKVVVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVATD 301
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461
VAARG+DV V +++Y P+ +T+VHR GRTGRAG G A+ + + K I +
Sbjct: 302 VAARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLVDWADLHKWKMINKA 361
Query: 462 VGCRFTQLPRIAVEGGGDMYNDMG 485
+ F P+ +DMG
Sbjct: 362 LDLPFDD-PQETYSSSEHFLHDMG 384
>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
Length = 641
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 227/365 (62%), Gaps = 13/365 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + +++AL G PIQ + + GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
KI + + NP +++APTRELA QV E + L + +YGG I QMR
Sbjct: 67 KI------NLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P+
Sbjct: 121 ALSRGAHIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPET 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL++P VD+ G ++ + ++ EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTNNT--VEQVTQNFWIVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 239 LL-ETEEIDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+KG AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRML 357
Query: 456 KSIER 460
++IER
Sbjct: 358 RTIER 362
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/363 (43%), Positives = 225/363 (61%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S++I A+ G + PIQ + ++G D+IG+A+TGTGKT +F IPIL+ I
Sbjct: 7 NELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+ N R +VL PTRELA QV +E + A + T+ +YGG PI Q++AL
Sbjct: 67 DRDN------RKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV +GTPGRVID I R L L +V+ VVLDEAD+ML +GF ED+E IL +P+ RQ
Sbjct: 121 KGGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP I LT KY K+P+ + +V + I Y I T K ++ +L+
Sbjct: 181 TALFSATMPKAILELTKKYQKDPVHIKVVRKT--LTVSNIKQYYIETRKSNKLEVLTRLL 238
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ +VFT TK+ AD L ++ A+ Y + LHGD+ Q QR+ + FR G +IL
Sbjct: 239 DVY-NPKLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDIL 297
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+D+ +V+ +I+YELP E +VHR GRTGRAG++G A ++ R++K
Sbjct: 298 VATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREMRKLKD 357
Query: 458 IER 460
IER
Sbjct: 358 IER 360
>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
Length = 529
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/374 (43%), Positives = 233/374 (62%), Gaps = 21/374 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + IV AL G + PIQ A + ++G D+IG+A+TGTGKT AFGIP++ I
Sbjct: 11 LELDKKIVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQAITD 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYG 221
F KH + L++ PTRELA QV +E + + + + VYGG PI Q+RAL
Sbjct: 71 F--KHIQA-----LIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNN 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR+ID I R + L ++F+VLDEAD+ML +GF +D+E I+ LP RQ+++
Sbjct: 124 VQIVIGTPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--IT 339
FSATMP I SLT KY+K P V + + +++ I +E I L +
Sbjct: 184 FSATMPRPILSLTKKYMKAPKNVTISKEE-------LTVPLIEQYYFETKDKIEGLCRLL 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ GK I+F +TK+ D L+ A+ ++ Y E LHGD+SQ+QR+R + FR+G ++LI
Sbjct: 237 DAEIDGKLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLI 296
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV N+ +I++++P E++VHR GRTGRAG G A+ T ++ RQ+K I
Sbjct: 297 ATDVAARGIDVDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLI 356
Query: 459 ERDVGCRFT--QLP 470
ER V + QLP
Sbjct: 357 ERTVKTKIQRRQLP 370
>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
Length = 633
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 228/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ +++AL G PIQ A + + GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFSDLALNSTLLSALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
+K+ K P +V+APTRELA QV E ++ L + +YGG I QM
Sbjct: 66 NKLDLTQYK------PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G +VGTPGRV DLI R L+L E VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 120 RALKSGAHIIVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++ + +++L++P VD+ G S+Q +A Y + + EK +
Sbjct: 180 TAQRVLFSATMPPIVKDIVDRFLRDPARVDVAG-SNQTVAKVEQQYWVVKGV-EKDEAMA 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDVP ++ + +Y++P E+++HR GRTGRAG+KG AIL+ Q R
Sbjct: 297 DILVATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356
Query: 455 VKSIER 460
+++IER
Sbjct: 357 LRTIER 362
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 233/367 (63%), Gaps = 7/367 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + ++AAL G K PIQ+ + + G D++G A+TGTGKT AF +P
Sbjct: 79 GVRFTDLGLDPRVLAALEEVGYEKPSPIQEQTIPLLLDGHDVVGLAQTGTGKTAAFALPA 138
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + + +G R+ LVLAPTRELA QV + F A ++ + +YGG+P Q
Sbjct: 139 LSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQ 198
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE ILE P
Sbjct: 199 LAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTP 258
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++Q +FSATMP IR + +YL +P+ V + + A+ Y ++ ++
Sbjct: 259 DSKQVALFSATMPNSIRKIAQQYLNDPVEVRVKAKTTTS-ANISQRYMQVMHSHKLDAMT 317
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+ A RDGR
Sbjct: 318 RVLEVENYDG--IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGR 375
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG++G+AIL T ++
Sbjct: 376 IDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKY 435
Query: 454 QVKSIER 460
++ IE+
Sbjct: 436 MLRQIEK 442
>gi|339009468|ref|ZP_08642040.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|421872706|ref|ZP_16304323.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
gi|338773946|gb|EGP33477.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|372458121|emb|CCF13872.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
Length = 529
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/363 (43%), Positives = 235/363 (64%), Gaps = 14/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L + ++++ A+ G + PIQ A + ++G D+IG+A+TGTGKT AFGIP+ + +
Sbjct: 5 SDLALHKNVLQAIHDMGFEEPSPIQAACIPKILEGGDLIGQAQTGTGKTAAFGIPLAEVL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N + R + +VL PTRELA QV E + T+ +YGG ISHQ+RAL
Sbjct: 65 ---NPTNNRIQ---AIVLTPTRELAIQVAGELVRICKYKKIRTLPIYGGQSISHQIRALR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGRV+D ++R L+L V+ +VLDEAD+ML +GF ED+E IL + RQ+
Sbjct: 119 QGVHVVIGTPGRVLDHLRRKTLHLENVKMLVLDEADEMLDMGFIEDIETILSHMKAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLI 338
++FSATMPP I+ L ++Y+KNP TV + ++ A I +Y ++ S+ L
Sbjct: 179 LLFSATMPPEIKRLAHRYMKNPETVAV--SREEVTAPSIEQVYYKVFERNKRESLCRILD 236
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
++ + G I+F +TKR D L+ A+ A+ Y + LHGD+SQ+QR++ + AFR+G L
Sbjct: 237 SQDVELG--IIFCRTKRGVDELSEALQARGYMADGLHGDLSQAQRDKVMKAFREGTIEFL 294
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+DV NV +I+Y++P E++VHR GRTGRAG+KG A+ + T ++ RQ+
Sbjct: 295 IATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGIAMTLVTPREMRQLMV 354
Query: 458 IER 460
I++
Sbjct: 355 IQK 357
>gi|403528202|ref|YP_006663089.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
gi|403230629|gb|AFR30051.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
Length = 726
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 227/367 (61%), Gaps = 7/367 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 70 GVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 129
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+ Q
Sbjct: 130 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 189
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFA+DVE I ++ P
Sbjct: 190 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTP 249
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ +FSATMP IR ++ +YL NP + V A+ Y ++ ++
Sbjct: 250 ETRQVALFSATMPGQIRRMSKQYLNNPAEIS-VKSKTTTGANTKQRYLQVMGPHKLDALT 308
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E G I F +TK + LA + A+ + ++GDI Q QRERT+ A ++GR
Sbjct: 309 RILEVEEFDG--VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGR 366
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLDV + +I+Y++P+ +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 367 IDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKY 426
Query: 454 QVKSIER 460
++SIE+
Sbjct: 427 LLRSIEK 433
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 157/406 (38%), Positives = 246/406 (60%), Gaps = 13/406 (3%)
Query: 78 QHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
Q ++ + D + + +G L ++ +++ A+ + G PIQ+ + M+G
Sbjct: 97 QQEETPAEAKNTVDAAEQSDGPTFDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGN 156
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PIL +I R+P LVLAPTRELA QV + F A
Sbjct: 157 DVVGLAQTGTGKTAAFALPILARI------DPSKRHPQALVLAPTRELALQVAESFESFA 210
Query: 198 PSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
L + +YGG Q+ L G VVGTPGRVID + + +L++SE++F+VLDEA
Sbjct: 211 THLGGIHVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEA 270
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE ILE P+++Q +FSATMP IR L+ +YL +P + + S Q+
Sbjct: 271 DEMLNMGFQEDVERILEDTPEDKQVALFSATMPAGIRRLSKQYLNDPQEITV--KSTQRT 328
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
++ I + + K + +++ E + I+F +TK + + LA + A+ +N +
Sbjct: 329 SENIEQDYLFVNHRNKLEALTRIL-EVTEFEAMIMFVRTKNETEELAERLRARGFNAAAI 387
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
+GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV + + +Y++P+ +E++VHR GR
Sbjct: 388 NGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGR 447
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGD 479
TGRAG+ G AIL T ++ R +K+IER ++ +V+ D
Sbjct: 448 TGRAGRSGRAILFVTPRERRLLKAIERATKSTLNEIELPSVDAVND 493
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 236/387 (60%), Gaps = 20/387 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L + +++ ALA G + PIQ+A + P + G D++G+A TGTGKT AF +P+L +I
Sbjct: 19 SELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHRI 78
Query: 162 I-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQ 214
+ + RG P +VL PTRELA QV + L + VYGG +S Q
Sbjct: 79 RDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQ 138
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D + R +L+LS ++ VVLDEAD+ML +GFAED++ ILER P
Sbjct: 139 LRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERTP 198
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----E 329
+RQ+M+FSATMPP I L +YL++P ++L S + DG SI + Y
Sbjct: 199 DDRQTMLFSATMPPRIAGLVRRYLRDPRRIEL---SRAESLDG-DAASITQTAYVVPRGH 254
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
KP+ +G+++ +VF +T+ + DRL M + Y E LHG + Q QR R +
Sbjct: 255 KPAALGRVLDIETPEA-TVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGR 313
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
R G ++++ATDVAARGLD+ + +++Y++P+ E +VHR GR GRAG++GSAI +
Sbjct: 314 LRTGTADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAE 373
Query: 449 DQQARQVKSIERDVG--CRFTQLPRIA 473
+ R +K+IER G +LP +A
Sbjct: 374 PGEHRMIKAIERVTGQPVPIRKLPTVA 400
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 154/371 (41%), Positives = 232/371 (62%), Gaps = 12/371 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L++S I+ A+ R G + PIQ A + MQG+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
R RN +++APTRELA QV +E + + + VYGG IS Q+RAL
Sbjct: 65 ------DHRSRNIQGIIIAPTRELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR++D I R L L V +VLDEAD+ML++GF +D+E IL +P++RQ+
Sbjct: 119 NHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP IR + +++ NP V + + + I Y I EK ++ +L+
Sbjct: 179 MLFSATMPDPIRKIAERFMNNPELVRV--KAKEMTVPSIEQYYIKVQEREKFDVLSRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA+A+ + Y E +HGD+SQ++R L F+DG+ ++L+
Sbjct: 237 VQSP-DLAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + +Y++P E++VHR GRTGRAG++G A+ T ++ +K++
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
Query: 459 ERDVGCRFTQL 469
E+ R +
Sbjct: 356 EQTTKKRMLPM 366
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 235/373 (63%), Gaps = 12/373 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ ++
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLR 353
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 354 IVEETTKKRMTPL 366
>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
Length = 603
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 226/361 (62%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ LA +G PIQ+A M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 51 SEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL----- 105
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
G P LVLAPTRELA QV + F A P L+ + +YGG+ Q+ +L GVD
Sbjct: 106 -QPEGPGPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLKRGVD 164
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++FS
Sbjct: 165 VVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFS 224
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP IR L+ +YL+ P + + + +K A I I K + +++ E
Sbjct: 225 ATMPAEIRRLSKRYLREPAEITI--KTQEKEARRIRQRCITLQNSHKLEALNRVL-EAVT 281
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK ++ + A ++ L+GD+ Q+QRERT+ R G NIL+ATDV
Sbjct: 282 GEGVIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDV 341
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL T ++ R V ++ER
Sbjct: 342 AARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNLERAT 401
Query: 463 G 463
G
Sbjct: 402 G 402
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/371 (43%), Positives = 228/371 (61%), Gaps = 13/371 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++++VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
A G I+F +TK LA + A+ Y+ EPL+GDI QS RERT+ + G+ +IL+A
Sbjct: 244 EAFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQSARERTVEKLKQGQIDILVA 302
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDV ARGLDV V +I+Y++P SE++VHR GRTGRAG++G AIL + ++ R + SIE
Sbjct: 303 TDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIE 362
Query: 460 RDVGCRFTQLP 470
+ +P
Sbjct: 363 KTTKQPIEAMP 373
>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 726
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 227/367 (61%), Gaps = 7/367 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 70 GVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 129
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+ Q
Sbjct: 130 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 189
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFA+DVE I ++ P
Sbjct: 190 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTP 249
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ +FSATMP IR ++ +YL NP + V A+ Y ++ ++
Sbjct: 250 ETRQVALFSATMPGQIRRMSKQYLNNPAEIS-VKSKTTTGANTKQRYLQVMGPHKLDALT 308
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E G I F +TK + LA + A+ + ++GDI Q QRERT+ A ++GR
Sbjct: 309 RILEVEEFDG--VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGR 366
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLDV + +I+Y++P+ +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 367 IDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKY 426
Query: 454 QVKSIER 460
++SIE+
Sbjct: 427 LLRSIEK 433
>gi|424736339|ref|ZP_18164799.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
gi|422949942|gb|EKU44315.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
Length = 507
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 235/373 (63%), Gaps = 12/373 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ ++
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLR 353
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 354 IVEETTKKRMTPL 366
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 233/375 (62%), Gaps = 13/375 (3%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S +EG + L + +++AL G K PIQ+ + + G+D++G A+TGTGKT A
Sbjct: 98 ESHEEGTRFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAA 157
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGT 209
F +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ + +YGG+
Sbjct: 158 FALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGS 217
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE I
Sbjct: 218 PYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETI 277
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATS 326
LE P +Q +FSATMP IR + +YL +P V + K G ++ Y
Sbjct: 278 LEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEVRV----KTKTTTGANIRQRYMQVMH 333
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
++ ++ L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT
Sbjct: 334 SHKLDAMTRVLEVENYDG--IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERT 391
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
+ A RDGR +IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG+ G AIL
Sbjct: 392 VDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAIL 451
Query: 446 IYTDQQARQVKSIER 460
T ++ ++ IE+
Sbjct: 452 FVTPREKYMLRQIEK 466
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 231/369 (62%), Gaps = 14/369 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+ + L + +S ++ AL G + PIQ + ++G D+IG+A+TGTGKT AFG
Sbjct: 2 EQQELSFKAMGLSSSVIKALEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAFG 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPIS 212
IPI++++ R + LVLAPTRELA QV +E + + + +YGG
Sbjct: 62 IPIVERL------DHRSKRVEALVLAPTRELAIQVAEEITKIGKFSGIKVVPIYGGQSYD 115
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+RAL++G V+GTPGRV+D I+R L L VQ +VLDEAD+ML +GF ED+E IL+
Sbjct: 116 RQIRALEHGAQVVIGTPGRVMDHIRRGTLKLDHVQMMVLDEADEMLDMGFIEDIEFILKN 175
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKP 331
+P+NRQ+++FSAT+P I L +YLK+P+ V++ S ++L I +EK
Sbjct: 176 VPENRQTLLFSATVPDPIAKLARRYLKDPVHVNI---SPERLTVPSIEQVFYEVREFEKL 232
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ + I + + + I+F +TK+ D L + A+ Y E LHGD++Q QR R + F+
Sbjct: 233 DALTR-ILDMEEAERTIIFCRTKKRVDELTEGLQARGYTAEALHGDLNQVQRNRVMKRFK 291
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+G IL+ATDVAARGLD+ NV +I+Y+LP +E++VHR GRTGRAG+ G+AI + +
Sbjct: 292 EGGSEILVATDVAARGLDIDNVTHVINYDLPQDTESYVHRIGRTGRAGRTGTAISLINPK 351
Query: 451 QARQVKSIE 459
+ RQ++ +E
Sbjct: 352 EFRQLRQME 360
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 223/368 (60%), Gaps = 13/368 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + ++L + ++I A+A G + PIQ + ++G D+IG+A+TGTGKT AF IP
Sbjct: 2 EITNFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L+KI + +VL PTRELA QV +E + A L T+ +YGG PI
Sbjct: 62 LLEKI------DPSDKRLQAIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRVID I R L S V+ VV+DEAD+ML +GF ED+E IL
Sbjct: 116 QIKALKGGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSST 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
PQ RQ+ +FSATMP I LT KY K P+ + +V + + I + I T K +
Sbjct: 176 PQERQTSLFSATMPKAILELTQKYQKEPVHIKVV--RKELTVNNIKQFYIETRKSNKLEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + +VFT TK+ AD L + A+ Y + LHGD+ Q QR+ + FR G
Sbjct: 234 LTRLIDVY-NPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+IL+ATDVAARG+DV +V+ +I+YELP E +VHR GRTGRAG+ G A ++
Sbjct: 293 TIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREM 352
Query: 453 RQVKSIER 460
R++K IER
Sbjct: 353 RKLKDIER 360
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 233/373 (62%), Gaps = 13/373 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
++ G+ + L + +++AL G K PIQ+ + + G+D++G A+TGTGKT AF
Sbjct: 94 EENGIKFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFA 153
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPI 211
+P L ++ + + +G R+ LVLAPTRELA QV + F A ++ + +YGG+P
Sbjct: 154 LPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPY 213
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ L G VVGTPGRVID + + +L+LS +Q++VLDEAD+ML +GFAEDVE ILE
Sbjct: 214 GPQLAGLRRGAQVVVGTPGRVIDHLNKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILE 273
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMY 328
P +Q +FSATMP IR + +YL +P V + K G ++ Y T +
Sbjct: 274 GTPDAKQVALFSATMPSSIRKIAQQYLNDPTEVRV----KTKTTTGANIRQRYMQVTHSH 329
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
+ ++ L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+
Sbjct: 330 KLDAMTRVLEVENYDG--IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVD 387
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
A RDGR +IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG+ G AIL
Sbjct: 388 ALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFV 447
Query: 448 TDQQARQVKSIER 460
T ++ ++ IE+
Sbjct: 448 TPRERYMLRQIEK 460
>gi|374335166|ref|YP_005091853.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
gi|372984853|gb|AEY01103.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
Length = 596
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 155/361 (42%), Positives = 224/361 (62%), Gaps = 13/361 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L ++ ++ AL G + IQ A + + GRD++G A+TGTGKT AF +P+L +I
Sbjct: 13 LGLAPAVLQALTDAGYEQPSAIQAAAIPTLLTGRDVLGLAQTGTGKTAAFALPMLSRI-- 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
G P LVLAPTRELA QV + F A + + +YGG Q+RAL
Sbjct: 71 ----SGGNAYPQVLVLAPTRELAIQVAESFENYAKYQKDIRIVSIYGGQAYDSQIRALKR 126
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +DVE ILE P RQ
Sbjct: 127 GVDIVVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPDTRQIA 186
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMPP I+ + KYLK+P V + + + A Y M ++ ++ + TE
Sbjct: 187 LFSATMPPAIQRVAQKYLKDPQEVR-IANKTRTNASIRQRYWFVRGMPKQEALCRLVETE 245
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ C+VF +T++DA+ LA M++ + CE LHGDI Q RE+ + ++GR N+L+A
Sbjct: 246 NMDA--CLVFVRTRKDAEELAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNVLVA 303
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDV ARGLDV + +I+Y++P+ +E++VHR GRTGRAG++G AIL T ++ R + ++E
Sbjct: 304 TDVVARGLDVERISHVINYDMPHDNESYVHRIGRTGRAGREGDAILFVTGREKRSLYNLE 363
Query: 460 R 460
R
Sbjct: 364 R 364
>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 647
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 233/377 (61%), Gaps = 15/377 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L+++ +++AL + G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLELADTLLSALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KLKLSQHK------PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 121 ALKNGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G+ ++ +A + + + + +++
Sbjct: 181 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGE-NRTVAKVDQQFWVVKGVEKDEAMMRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 240 LETEDTDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG++G AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRML 357
Query: 456 KSIERDVGCRF--TQLP 470
++IER R QLP
Sbjct: 358 RTIERVTKSRMEEIQLP 374
>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
C3-41]
Length = 508
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 235/373 (63%), Gaps = 12/373 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI + N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KI------DPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNRPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ ++
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLR 353
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 354 IVEETTKKRMTPL 366
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 163/384 (42%), Positives = 231/384 (60%), Gaps = 18/384 (4%)
Query: 99 LDISK---LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K L IS +I ++A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+K+ N KH + +VL PTRELA QV KE + + T+ VYGG PI
Sbjct: 61 PILEKV-DPNNKHLQA-----IVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q++AL GV V+GTPGRVID I R L L +V+ VVLDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKALKSGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQ 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P RQ+ FSATMP I LT Y P + +V + I + I T K
Sbjct: 175 TPIERQTTFFSATMPKEILELTKLYQHEPEIIKVV--RKELTVPNIKQFYIETRRANKLE 232
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +LI + +VF TKR +D L + A+ Y + LHGD+ Q+QR+ + FR
Sbjct: 233 VLCRLIDVY-NPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQ 291
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDVAARG+DV +VD++ +Y+LP E +VHR GRTGRAG++G + ++
Sbjct: 292 GTIDILVATDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKE 351
Query: 452 ARQVKSIERDVGCRFTQ--LPRIA 473
R+++ IER C+ + +P IA
Sbjct: 352 MRKMRDIERYTKCKLVKHSIPTIA 375
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 249/412 (60%), Gaps = 24/412 (5%)
Query: 73 SSIAWQHAQSAVDDYVAYDDS-----------SKDEGLDISKLDISQDIVAALARRGISK 121
S++ Q Q ++ V +++ S+++ L + ++++AA+ + G
Sbjct: 37 SAVVNQEPQDVTNEAVESENAEAKVPEKDNQQSEEQQPSFDGLGLPENVLAAVKKVGFEV 96
Query: 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181
PIQ + M+G D++G A+TGTGKT AF +PIL +I R+P LVLAP
Sbjct: 97 PSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRI------DVSKRHPQALVLAP 150
Query: 182 TRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
TRELA QV + F E + + +YGG Q+ L G VVGTPGRVID +++
Sbjct: 151 TRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDHLEK 210
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
+L++SE++F+VLDEAD+ML++GF EDVE ILE P ++Q +FSATMP IR L+ +YL
Sbjct: 211 GSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALFSATMPSGIRRLSKQYL 270
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD 358
+P + + + Q+ ++ I + S +K + +++ E + I+F +TK + +
Sbjct: 271 SDPREITV--KATQRTSENIEQDYLLVSHRDKLDALTRIL-EITEFEAMIMFVRTKNETE 327
Query: 359 RLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417
LA + A+ +N ++GDI Q+ RERT+ +DGR +IL+ATDVAARGLDV + + +
Sbjct: 328 ELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFN 387
Query: 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
Y++P+ +E++VHR GRTGRAG+KG AIL T ++ R +KSIER R ++
Sbjct: 388 YDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIERATKSRLNEI 439
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 229/368 (62%), Gaps = 13/368 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++S +I A+A G + PIQ + ++G D+IG+A+TGTGKT AFGIP
Sbjct: 2 ENVVFKDLNLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISH 213
++ + NE L+L+PTRELA Q+ +E + + + + VYGG PI
Sbjct: 62 AIEMLDPQNE------GIQVLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL ++GTPGR++D ++R L L++++ ++LDEAD+ML++GF ED++ ILE++
Sbjct: 116 QIAALKKRPQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ +Q+++FSATMP I LT+KYLKNPL + Q I + + S K I
Sbjct: 176 PEEKQTILFSATMPKEILDLTSKYLKNPLHIK--AAHKQMTVPSIEQFYLEVSQSSKLEI 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + G +VF TKR D L ++ ++ Y+ E LHGD+ Q QR R ++ FR G
Sbjct: 234 LSRLI-DANNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +ILIATDVAARG+DV NV+ + +Y+LP+ E +VHR GRTGRAGK G + ++
Sbjct: 293 QIDILIATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREI 352
Query: 453 RQVKSIER 460
++K I+R
Sbjct: 353 HKLKDIQR 360
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 153/371 (41%), Positives = 232/371 (62%), Gaps = 12/371 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L++S I+ A+ R G + PIQ A + MQG+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
R RN +++APTRELA QV +E + + + VYGG IS Q+RAL
Sbjct: 65 ------DHRSRNIQGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR++D I R L L V +VLDEAD+ML++GF +D+E IL +P++RQ+
Sbjct: 119 NHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP IR + +++ NP V + + + I Y + EK ++ +L+
Sbjct: 179 MLFSATMPDPIRKIAERFMNNPELVRV--KAKEMTVPSIEQYYVKVQEREKFDVLSRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA+A+ + Y E +HGD+SQ++R L F+DG+ ++L+
Sbjct: 237 VQSP-DLAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + +Y++P E++VHR GRTGRAG++G A+ T ++ +K++
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
Query: 459 ERDVGCRFTQL 469
E+ R +
Sbjct: 356 EQTTKKRMLPM 366
>gi|336118869|ref|YP_004573641.1| ATP-dependent RNA helicase [Microlunatus phosphovorus NM-1]
gi|334686653|dbj|BAK36238.1| putative ATP-dependent RNA helicase [Microlunatus phosphovorus
NM-1]
Length = 505
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 162/385 (42%), Positives = 231/385 (60%), Gaps = 11/385 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK- 167
DIVAALA+ GI FPIQ+ + A+ G DMIG+ARTGTGKTLAFGI L +I+ +E+
Sbjct: 4 DIVAALAQVGIVHPFPIQQMSIPIALTGTDMIGQARTGTGKTLAFGITALQRIVVPSERD 63
Query: 168 ---HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYG 221
+ P L++ PTRELA QV K+ +A S+ + VYGG Q+ AL G
Sbjct: 64 FELQAKPGAPQALIVTPTRELALQVSKDL-TTASSIRKARVLTVYGGVGYEPQLDALAAG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V+ VVGTPGR++DL R +L+LS ++ +VLDEAD+ML +GF DVE IL + P+ RQ+M+
Sbjct: 123 VEVVVGTPGRLLDLADRGSLDLSHIKVLVLDEADEMLDLGFLPDVERILAKTPELRQTML 182
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I +L +L++P+ + D + + +KP I+ +++
Sbjct: 183 FSATMPSAIVALARHHLRHPVNIRAESSDDTTTVPTTAQFVYQVHDLDKPEIVSRVLQAE 242
Query: 342 AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ + +VF +TKR A RLA +A + ++ +HGD+SQ RE+ L FR G N+L+AT
Sbjct: 243 NR-NRVMVFCRTKRAAQRLADDLAERGFSVTAIHGDLSQVLREKALKKFRSGAVNVLVAT 301
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARG+DV V +I+YE P+ +T+VHR GRTGRAG G AI + K I
Sbjct: 302 DVAARGIDVEGVTHVINYECPDDDKTYVHRIGRTGRAGASGVAITFVDWADVTRWKVINN 361
Query: 461 DVGCRFTQLPRIAVEGGGDMYNDMG 485
+ F + P +Y+D+G
Sbjct: 362 TLDLPFAE-PEETYSTSDHLYHDLG 385
>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
Length = 446
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 161/371 (43%), Positives = 233/371 (62%), Gaps = 19/371 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D L + +V LA +GI+ PIQ + AM GRD++G A+TGTGKT AFG+P++
Sbjct: 1 MDFDMLGLMPRLVKKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 60
Query: 159 DKI----IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPIS 212
D + +K K RG L+LAPTRELAKQ+ + L V GG I
Sbjct: 61 DALMRAGVKPEPKTVRG-----LILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIV 115
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QM+ L+ GVD +V TPGR+IDL+ R AL+LSE ++VLDEADQML +GF + I
Sbjct: 116 AQMKRLERGVDLLVATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPL 175
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI--SLYSIATSMYEK 330
L +RQ+M+FSATMP + L YL++P+ V++ + K AD I SL+ IA S EK
Sbjct: 176 LADDRQTMLFSATMPKQMNELAAAYLRSPVRVEV--NPPGKAADKIEQSLHYIAKS--EK 231
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
P ++ +L+ +H KG + IVF +TK ++L + K+ ++ +HG+ SQ QRER + AF
Sbjct: 232 PKLLIELLGKH-KGERAIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAF 290
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R+G+ +L+ATDVAARGLD+P+V + +++LPN E +VHR GRT RAG +G AI
Sbjct: 291 REGKVTVLVATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGAEGMAIAFCAP 350
Query: 450 QQARQVKSIER 460
+ +++SI++
Sbjct: 351 DEMSELRSIQK 361
>gi|379738244|ref|YP_005331750.1| ATP-dependent RNA helicase, Cold-shock DEAD box protein A
[Blastococcus saxobsidens DD2]
gi|378786051|emb|CCG05724.1| ATP-dependent RNA helicase, Cold-shock DEAD box protein A
[Blastococcus saxobsidens DD2]
Length = 550
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 231/379 (60%), Gaps = 17/379 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL G + PIQ+ + P +GRD++G+A TGTGKT AF +P+L ++
Sbjct: 6 LGLRPELLNALTALGYEEPTPIQQEAIPPLAEGRDLLGQAATGTGKTAAFSLPVLQRL-- 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYG 221
H R P+ LVL PTRELA QV + H L + VYGG PI Q+R+L+ G
Sbjct: 64 --PAHRTDRPPVALVLVPTRELAVQVSEALHRYGRELGARVLPVYGGAPIVRQLRSLESG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VV TPGR +DL+ R AL L E+ VVLDEAD+ML +GFAED+E IL+ P+ RQ+++
Sbjct: 122 VDVVVATPGRALDLLNRGALQLGEIATVVLDEADEMLDMGFAEDLEAILDETPEQRQTVL 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG----ISLYSIATSMYEKPSIIGQL 337
FSATMP + +L ++L++P+ + L +K A G + + KP+ +G++
Sbjct: 182 FSATMPRRLDALARRHLRDPVRIAL---GREKAAPGEAPRVRQTAYVVPRGAKPAALGRI 238
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A IVF +T+ + D L + + Y E LHG +SQ QR+R + R G +
Sbjct: 239 LDVEAPTA-AIVFCRTREEVDSLTETLNGRGYRAEALHGGMSQEQRDRVMGRLRGGTAEL 297
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ + +++Y++P+ E++VHR GR GRAG++G AI + ++ R +K
Sbjct: 298 LVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLK 357
Query: 457 SIERDVGCRFT--QLPRIA 473
+IE+ G ++P +A
Sbjct: 358 TIEKVAGAPIAVEKVPTVA 376
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 249/412 (60%), Gaps = 24/412 (5%)
Query: 73 SSIAWQHAQSAVDDYVAYDDS-----------SKDEGLDISKLDISQDIVAALARRGISK 121
S++ Q Q ++ V +++ S+++ L + ++++AA+ + G
Sbjct: 37 SAVVNQEPQDVTNEAVESENAEAKVPEKDNQQSEEQQPSFDGLGLPENVLAAVKKVGFEV 96
Query: 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181
PIQ + M+G D++G A+TGTGKT AF +PIL +I R+P LVLAP
Sbjct: 97 PSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRI------DVSKRHPQALVLAP 150
Query: 182 TRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
TRELA QV + F E + + +YGG Q+ L G VVGTPGRVID +++
Sbjct: 151 TRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDHLEK 210
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
+L++SE++F+VLDEAD+ML++GF EDVE ILE P ++Q +FSATMP IR L+ +YL
Sbjct: 211 GSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALFSATMPSGIRRLSKQYL 270
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD 358
+P + + + Q+ ++ I + S +K + +++ E + I+F +TK + +
Sbjct: 271 SDPREITV--KATQRTSENIEQDYLLVSHRDKLDALTRIL-EITEFEAMIMFVRTKNETE 327
Query: 359 RLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417
LA + A+ +N ++GDI Q+ RERT+ +DGR +IL+ATDVAARGLDV + + +
Sbjct: 328 ELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFN 387
Query: 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
Y++P+ +E++VHR GRTGRAG+KG AIL T ++ R +KSIER R ++
Sbjct: 388 YDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIERATKSRLNEI 439
>gi|154332025|ref|XP_001561829.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 225/380 (59%), Gaps = 13/380 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI++++
Sbjct: 89 SEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNADVLVQARTGSGKTLAFGIPIVERL 148
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+K RGR P ++ PTRELA QV+ + L +YGG ++Q R L G
Sbjct: 149 LKLQSHLTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLIVTALYGGVAYANQERVLRSG 208
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN----- 276
VD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 209 VDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSTS 268
Query: 277 -----RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 269 AEKTVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEIS 327
Query: 332 SIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +FR
Sbjct: 328 SMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSFR 386
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
D +F++LIATDVAARGLD+P VDL+I P+ + F+HR GRTGRAG+KG +L+Y +
Sbjct: 387 DNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPR 446
Query: 451 QARQVKSIERDVGCRFTQLP 470
+ V+ IER +F LP
Sbjct: 447 EEYVVERIERHAKMKFDVLP 466
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 233/374 (62%), Gaps = 13/374 (3%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K+E + S+ +V L +G + PIQ A M GRD++G+A+TGTGKT AF
Sbjct: 38 AKEEPSGFAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAF 97
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+P+L+++ K K P LVLAPTRELA QV + F + P L+ + +YGG+
Sbjct: 98 ALPLLERLQKDATK------PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSD 151
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ AL GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML +GF +DVE IL
Sbjct: 152 FRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWIL 211
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
++LP+ RQ ++FSATMP IR L+ +YL+ P + + + +K A I I K
Sbjct: 212 DQLPEERQVVLFSATMPSEIRRLSKRYLREPAEITI--KTKEKEARRIRQRCITLQNSHK 269
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAF 389
+ +++ E G I+F +TK ++ ++ A ++ L+GD+ Q+QRERT+
Sbjct: 270 LEALNRVL-EAVTGEGVIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERL 328
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G NIL+ATDVAARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL T
Sbjct: 329 RKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTP 388
Query: 450 QQARQVKSIERDVG 463
++ R V ++ER VG
Sbjct: 389 RERRFVNNLERAVG 402
>gi|374704913|ref|ZP_09711783.1| DEAD-box ATP dependent DNA helicase [Pseudomonas sp. S9]
Length = 558
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 239/375 (63%), Gaps = 15/375 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L ++Q+I+AAL G + PIQ+ + + G DMIG+A+TGTGKT AF +P+L +I
Sbjct: 9 AALGLTQNILAALTAVGYEEPSPIQQQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L+ + VYGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+EVI + +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFQAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+LK+P + + + Q +A I + +K + + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLKSPQHIKIAAKT-QTVAR-IEQAHLLIHADQKVNAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRF--TQLP 470
IER G + +LP
Sbjct: 360 IERVTGQKVGEVKLP 374
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/371 (42%), Positives = 227/371 (61%), Gaps = 13/371 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDV ARGLDV V +I+Y++P SE++VHR GRTGRAG++G AIL + ++ R + SIE
Sbjct: 303 TDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIE 362
Query: 460 RDVGCRFTQLP 470
+ +P
Sbjct: 363 KTTKQPIEAMP 373
>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
17982]
gi|153799192|gb|EDN81612.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 581
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 227/365 (62%), Gaps = 12/365 (3%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA++ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDKKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISL 320
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ + + +
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQ 291
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
K ++ +++ + G+ ++F +TKR A RL + A+ + LHGD+ Q
Sbjct: 292 VIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQ 350
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
RE+ L AFR+G+ ++L+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG
Sbjct: 351 GAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGN 410
Query: 440 KGSAI 444
G+A+
Sbjct: 411 SGTAV 415
>gi|110680325|ref|YP_683332.1| ATP-dependent RNA helicase [Roseobacter denitrificans OCh 114]
gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
denitrificans OCh 114]
Length = 433
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 241/375 (64%), Gaps = 21/375 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D +++ ++VA L R G+ PIQK + AM GRD++G A+TGTGKT AFG+P++
Sbjct: 3 DFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62
Query: 160 KIIKFN----EKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
++++ + K RG LVLAPTRELA Q+ + F E+ + V GG I+
Sbjct: 63 QMLELDGRPAPKSVRG-----LVLAPTRELATQISVNLRSFAENT-KVKVAMVVGGQSIN 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q++ L+ GVD +V TPGR++DL+ R A+ L E F+VLDEADQML +GF D+ I
Sbjct: 117 NQIKRLERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASV 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYEK 330
+P+ RQ+M+FSATMP + L N YL++P+ V++ K AD ++ ++ IA S EK
Sbjct: 177 IPKERQTMLFSATMPKQMNELANSYLRSPIRVEV--SPPGKAADKVTQEVHFIAKS--EK 232
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
P ++ +++ +H + + +VF +TK +++L ++ K+ Y +HG+ SQ QR+R ++AF
Sbjct: 233 PGLLIEMLDKH-RDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAF 291
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
+ G +L+ATDVAARGLD+P+V + +Y+LPN + +VHR GRT RAGK G+AI
Sbjct: 292 KSGEIKVLVATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAP 351
Query: 450 QQARQVKSIERDVGC 464
+ ++K+I++ +G
Sbjct: 352 DEMGELKAIQKTMGI 366
>gi|409358710|ref|ZP_11237069.1| dead/deah box helicase [Dietzia alimentaria 72]
Length = 539
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 216/356 (60%), Gaps = 13/356 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +IV ALA RGI+ F IQ+ L A+ G D+IG+ARTG GKT FG+P+L +I
Sbjct: 49 ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIA 108
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-----------SLDTICVYGGTPI 211
P LV+ PTREL QV ++ +A L + +YGGTP
Sbjct: 109 TGEATRSLDGTPRALVIVPTRELCVQVTQDLKIAATGLTASTENRTRPLKVLSIYGGTPY 168
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL+ GVD VVGTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E IL
Sbjct: 169 EQQVDALEKGVDVVVGTPGRLLDLANQSKLVLGKVEVLVLDEADEMLDLGFLPDIEKILR 228
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+P+ RQ+M+FSATMP I +L +L P + + + Y +KP
Sbjct: 229 MVPEKRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQYVYRAHSMDKP 288
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ +++ +G ++FT+TKR A +LA +A + Y+ +HGD+ Q RE++L AFR
Sbjct: 289 EVVSRILQADGRGA-TMIFTRTKRTAQKLADDLAERGYSVGAIHGDLGQGAREKSLKAFR 347
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
G ++L+ATDVAARG+DV +V +I+Y+ P +T+VHR GRTGRAG+KG A+ +
Sbjct: 348 TGEVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRKGVAVTL 403
>gi|398010006|ref|XP_003858201.1| nucleolar RNA helicase II, putative [Leishmania donovani]
gi|322496407|emb|CBZ31477.1| nucleolar RNA helicase II, putative [Leishmania donovani]
Length = 678
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 225/380 (59%), Gaps = 13/380 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI++++
Sbjct: 89 SEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERL 148
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+K RGR P ++ PTRELA QV+ + L +YGG ++Q R L G
Sbjct: 149 LKLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRSG 208
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN----- 276
VD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 209 VDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVG 268
Query: 277 -----RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 269 AERPVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEIS 327
Query: 332 SIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +FR
Sbjct: 328 SMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSFR 386
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
D +F++LIATDVAARGLD+P VDL+I P+ + F+HR GRTGRAG+KG +L+Y +
Sbjct: 387 DNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPR 446
Query: 451 QARQVKSIERDVGCRFTQLP 470
+ V+ IER +F LP
Sbjct: 447 EEYVVERIERHAKMKFDVLP 466
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/371 (42%), Positives = 227/371 (61%), Gaps = 13/371 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDV ARGLDV V +I+Y++P SE++VHR GRTGRAG++G AIL + ++ R + SIE
Sbjct: 303 TDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIE 362
Query: 460 RDVGCRFTQLP 470
+ +P
Sbjct: 363 KTTKQPIEAMP 373
>gi|405382160|ref|ZP_11035982.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397321648|gb|EJJ26064.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 555
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/370 (42%), Positives = 227/370 (61%), Gaps = 10/370 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + +QGRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLIQGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
+++K EK R+ L+LAPTREL Q+ ++F +P L V GG I+ Q
Sbjct: 63 RLLK-EEKRPDNRSVRTLILAPTRELVNQIADSLRKFIRKSP-LRINVVVGGVSINKQQL 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL RNA+ L+ V+++VLDEADQML +GF D+ I + P+
Sbjct: 121 QLERGSDILVATPGRLLDLCNRNAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMAPKR 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L YL +P+TV + K AD + Y +K ++
Sbjct: 181 RQTMLFSATMPKAIADLAGDYLTDPVTVQVTPPG--KAADKVEQYVHFVPGKNDKTVLLK 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++LA H Y+ +HG+ SQ QRER L FRDG
Sbjct: 239 KSLTENPD-GRAIVFLRTKHGAEKLAKHLEQVGYSVASIHGNKSQGQRERALKGFRDGAI 297
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
LIATDVAARG+D+P V + +Y+LP +E +VHR GRT RAG+ G AI +AR
Sbjct: 298 KTLIATDVAARGIDIPAVSHVFNYDLPEVAEAYVHRIGRTARAGRDGIAIAFCAPDEARL 357
Query: 455 VKSIERDVGC 464
++ IE+ +G
Sbjct: 358 LRDIEKLMGI 367
>gi|339896857|ref|XP_001462984.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
Length = 678
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 225/380 (59%), Gaps = 13/380 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI++++
Sbjct: 89 SEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERL 148
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+K RGR P ++ PTRELA QV+ + L +YGG ++Q R L G
Sbjct: 149 LKLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRSG 208
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN----- 276
VD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 209 VDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVG 268
Query: 277 -----RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 269 AERPVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEIS 327
Query: 332 SIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +FR
Sbjct: 328 SMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSFR 386
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
D +F++LIATDVAARGLD+P VDL+I P+ + F+HR GRTGRAG+KG +L+Y +
Sbjct: 387 DNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPR 446
Query: 451 QARQVKSIERDVGCRFTQLP 470
+ V+ IER +F LP
Sbjct: 447 EEYVVERIERHAKMKFDVLP 466
>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
Length = 513
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 235/373 (63%), Gaps = 12/373 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI + N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KI------DPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ ++
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLR 353
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 354 IVEETTKKRMTPL 366
>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 516
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 226/367 (61%), Gaps = 10/367 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S ++ AL GI + F IQ+ L A+ G D+IG+ARTGTGKTLAFG+P+L + K
Sbjct: 1 MSTELADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQRAQK-- 58
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVD 223
G + P LV+ PTRELA QV + ++ T + VYGG Q+ L G D
Sbjct: 59 -DPGTPKRPRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTD 117
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DL K+ L L V VVLDEAD+ML +GF D+E IL R P +RQ+M+FS
Sbjct: 118 VVVGTPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFS 177
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSD---QKLADGISLYSIATSMYEKPSIIGQLITE 340
ATMP I SL+ KYL+ P V D + + I+ ++ T +K ++ +L+ +
Sbjct: 178 ATMPSEIVSLSRKYLRRPTHVRASDDDEIDGSAITGQITQHAFRTHQMDKIEMLARLL-Q 236
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ G+ +VF QTKR DR+A + A+ + +HGD+ QSQRER L AFR+G+ NIL+A
Sbjct: 237 ASDHGQSMVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV +V +++YE P +T+ HR GRTGRAG+ G+A+ Q+ + K I
Sbjct: 297 TDVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRSGTAVTFVDWQEMPRWKLIN 356
Query: 460 RDVGCRF 466
+G F
Sbjct: 357 GALGLPF 363
>gi|392960700|ref|ZP_10326165.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421054542|ref|ZP_15517510.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421057795|ref|ZP_15520561.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|421065831|ref|ZP_15527523.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421071404|ref|ZP_15532524.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392440900|gb|EIW18560.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392447320|gb|EIW24574.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392454597|gb|EIW31419.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|392458035|gb|EIW34626.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392462136|gb|EIW38252.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
Length = 526
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 234/375 (62%), Gaps = 22/375 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ +++A+A G + PIQ + ++G D+IG+A+TGTGKT AFGIP ++KI
Sbjct: 10 IPLSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKI-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
R LVL PTRELA QV +E + + T+ +YGG PI Q++AL G
Sbjct: 68 -----ADSRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIKALRMG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSM 280
V V+GTPGR++D I+R + L V+ ++LDEAD+ML +GF ED+E I++ +P + RQ++
Sbjct: 123 VHVVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVEGRQTL 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--I 338
+FSATMP I +L KY+ NP T+ + + +Q +++ I YE + L +
Sbjct: 183 LFSATMPGPIATLARKYMNNPKTISI--NREQ-----LTVPLIDQIYYETREKLEALCRV 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+F +TKR D L ++ + Y + LHGD+SQ+QR+R + FRDG+ +L
Sbjct: 236 LDVETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMKKFRDGKLELL 295
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+D+ ++ + +Y++P +E +VHR GRTGRAGKKG AI ++ RQ+K
Sbjct: 296 IATDVAARGIDIDDITHVFNYDIPQDNEAYVHRIGRTGRAGKKGVAITFINPREYRQLKL 355
Query: 458 IERDVGCRFT--QLP 470
IE+ R QLP
Sbjct: 356 IEKLTKSRIVRKQLP 370
>gi|157863878|ref|XP_001687490.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
Length = 674
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 225/380 (59%), Gaps = 13/380 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI++++
Sbjct: 89 SEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERL 148
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+K RGR P ++ PTRELA QV+ + L +YGG ++Q R L G
Sbjct: 149 LKLPSHLTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRSG 208
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN----- 276
VD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 209 VDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVG 268
Query: 277 -----RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 269 AERPAHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEIS 327
Query: 332 SIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +FR
Sbjct: 328 SMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSFR 386
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
D +F++LIATDVAARGLD+P VDL+I P+ + F+HR GRTGRAG+KG +L+Y +
Sbjct: 387 DNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPR 446
Query: 451 QARQVKSIERDVGCRFTQLP 470
+ V+ IER +F LP
Sbjct: 447 EEYVVERIERHAKMKFDVLP 466
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 229/397 (57%), Gaps = 33/397 (8%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
LDI+Q+I A+A G + PIQ + ++G+D+IG+A+TGTGKT AF IPIL+KI
Sbjct: 9 LDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPILEKI-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDY 220
R+ +VL PTRELA QV +E + A + T+ +YGG PI Q++AL
Sbjct: 67 ----DPNDRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKALKG 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV ++GTPGR ID IKR + V+ VVLDEAD+ML +GF ED+E ILE +P+ RQ+
Sbjct: 123 GVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVPEERQTT 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
FSATMP I LT KY P + +V + + I Y I T K ++ +LI
Sbjct: 183 FFSATMPKAILELTKKYQNEPEHIKVV--RKELTVENIKQYYIETRASNKIEVLSRLIDV 240
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ +VF TK+ AD L + + Y + LHGD+ Q QR+ + FR+G +IL+A
Sbjct: 241 Y-NPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVA 299
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARG+DV +V+ + +++LP E +VHR GRTGRAG++G + + R++K IE
Sbjct: 300 TDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGRDMRKMKDIE 359
Query: 460 R--------------------DVGCRFTQLPRIAVEG 476
R VG F ++ R+A EG
Sbjct: 360 RYTKSKLEKHPIPTVGDVEEKKVGAFFEEVKRVANEG 396
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/371 (42%), Positives = 227/371 (61%), Gaps = 13/371 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDV ARGLDV V +I+Y++P SE++VHR GRTGRAG++G AIL + ++ R + SIE
Sbjct: 303 TDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIE 362
Query: 460 RDVGCRFTQLP 470
+ +P
Sbjct: 363 KTTKQPIEAMP 373
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 231/379 (60%), Gaps = 22/379 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+ I+ A+ G + PIQ + + G D+IG+A+TGTGKT AFGIPIL+K+
Sbjct: 10 LQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPILEKL-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
+ R R LV+ PTRELA QV +E + D T+ VYGG I Q+ AL G
Sbjct: 68 ----NPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRG 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VVGTPGR++D I R L L ++ +VLDEAD+ML +GF +D+E I++ P+ RQ+++
Sbjct: 124 VQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE--KPSIIGQL-- 337
FSATMP I+ L KYLKNP V + D +++ SI YE + + + L
Sbjct: 184 FSATMPHEIQQLARKYLKNPRLVAVSKDE-------LTVPSIEQVYYEVREKTKLESLCR 236
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E I+F +TKR D L ++ + Y E LHGD++Q+QR + + F++G+ +
Sbjct: 237 VLETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDY 296
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ NV +I+Y++P E +VHR GRTGRAG+ G AI ++ RQ++
Sbjct: 297 LVATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLR 356
Query: 457 SIERDVGCRFTQ--LPRIA 473
IE+ +G R + LP IA
Sbjct: 357 LIEKIIGARIARKNLPSIA 375
>gi|421076010|ref|ZP_15537012.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392525869|gb|EIW48993.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 526
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 234/375 (62%), Gaps = 22/375 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ +++A+A G + PIQ + ++G D+IG+A+TGTGKT AFGIP ++KI
Sbjct: 10 IPLSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKI-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
R LVL PTRELA QV +E + + T+ +YGG PI Q++AL G
Sbjct: 68 -----ADSRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIKALRMG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSM 280
V V+GTPGR++D I+R + L V+ ++LDEAD+ML +GF ED+E I++ +P + RQ++
Sbjct: 123 VHVVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVEGRQTL 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--I 338
+FSATMP I +L KY+ NP T+ + + +Q +++ I YE + L +
Sbjct: 183 LFSATMPGPIATLARKYMNNPKTISI--NREQ-----LTVPLIDQIYYETREKLEALCRV 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+F +TKR D L ++ + Y + LHGD+SQ+QR+R + FRDG+ +L
Sbjct: 236 LDVETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMKKFRDGKLELL 295
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+D+ ++ + +Y++P +E +VHR GRTGRAGKKG AI ++ RQ+K
Sbjct: 296 IATDVAARGIDIDDITHVFNYDIPQDNEAYVHRIGRTGRAGKKGVAITFINPREYRQLKL 355
Query: 458 IERDVGCRFT--QLP 470
IE+ R QLP
Sbjct: 356 IEKLTKSRIVRKQLP 370
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 232/370 (62%), Gaps = 10/370 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + ++ L G + PIQ+ + P ++GRD++G+A TGTGKT AF +P+L +I
Sbjct: 22 AALGLEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQRI 81
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
HG + P LVL PTRELA QV + L + +YGG + Q++AL
Sbjct: 82 -----AHGPRQRPTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALR 136
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV+ +V TPGR +D ++R L L+++Q VVLDEAD+ML +GFA+D++ ILE+ P +Q+
Sbjct: 137 RGVEVIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQT 196
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK-LADGISLYSIATSMYEKPSIIGQLI 338
+FSATMPP I S+ ++LKNP+ V + + + A + + + K S + +++
Sbjct: 197 ALFSATMPPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVL 256
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ A +VF +T+ + D + A+ + Y E +HG +SQ QR+R + AFR G+ +L
Sbjct: 257 -DIATPKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELL 315
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLD+P+V +I+Y+LP++ E +VHR GRTGRAG++G+A+ I ++ R +++
Sbjct: 316 VATDVAARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRA 375
Query: 458 IERDVGCRFT 467
+E+ + T
Sbjct: 376 VEQHTKAKIT 385
>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
Length = 618
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 229/377 (60%), Gaps = 15/377 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++++I++AL G PIQ A + M G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMR 216
K+ G+ R P +V+APTRELA QV E +D + +YGG I QMR
Sbjct: 67 KL-----DLGQ-RKPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P++
Sbjct: 121 ALRAGAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPES 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+ P +D+ G + + + + EK + +
Sbjct: 181 AQRVLFSATMPPMVKEIVDRFLREPARIDVAGSN--RTVEKVEQQFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+ G AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRML 357
Query: 456 KSIERDVGCRF--TQLP 470
++IER R QLP
Sbjct: 358 RTIERVTSTRMEEIQLP 374
>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
Length = 623
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 227/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NK+LKN + + + D I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANKHLKNATNISIA--ASHTTVDSIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + ++G+ +IL
Sbjct: 241 VENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERATNSRISPM 370
>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
Length = 595
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 230/379 (60%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 29 EAMKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 88
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
+L K+ + + +VL PTRELA QV +E + + +YGG I
Sbjct: 89 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVK 142
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G ++GTPGRV+D ++R + L V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 143 QIRSLKDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQL 202
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMPP I + K+ K P+TV +V + ++ Y K +
Sbjct: 203 PEERQTLMFSATMPPAIAEIARKFQKEPVTVRVV--KKELTVPKVTQYYYEVKPKNKVEV 260
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TK+ D L A+ + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 261 MCRLLDLYAP-KLSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNG 319
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +IL+ATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG++G A + ++
Sbjct: 320 RTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREV 379
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 380 YKLRDIQR--YCKTRIIPQ 396
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 233/383 (60%), Gaps = 17/383 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GI+ P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 3 NFAALGVEQHWVDALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + PSL + VYGG + Q+R
Sbjct: 63 KM-NLDKRH-----PQALVIAPTRELALQITQEANILAATEPSLSLLAVYGGQDVERQLR 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+LS V+ +VLDEADQML +GF DVE IL+ +P
Sbjct: 117 KLKGGAQLIIGTPGRLLDHLRRGTLDLSGVKMLVLDEADQMLHMGFLNDVETILQEVPYR 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 177 RQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDM 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L + ++F +TKR A L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 237 LNADRPY--LAVIFCRTKRRAAALNEQLQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 294
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV V + +Y++P +E+++HR GRTGRAG KG A+ + T + ++
Sbjct: 295 LLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPEL 354
Query: 456 KSIERDVGCRFTQLPRIAVEGGG 478
++I++ G FT + EGGG
Sbjct: 355 RNIQKVAGVTFT-----SSEGGG 372
>gi|433545971|ref|ZP_20502309.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182587|gb|ELK40150.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 549
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 229/363 (63%), Gaps = 15/363 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 25 SDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLAGGDLIGQAQTGTGKTAAFGIPLVEKI 84
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 85 TPANRVQA-------IVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALR 137
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P+ RQ+
Sbjct: 138 QGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITHMPEERQT 197
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLI 338
++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 198 LLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRILD 255
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G L
Sbjct: 256 SEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFL 313
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+DV NV +I+Y++P SE++VHR GRTGRAG+KG A+ + T ++ RQ+
Sbjct: 314 IATDVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMF 373
Query: 458 IER 460
I++
Sbjct: 374 IQK 376
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/380 (42%), Positives = 222/380 (58%), Gaps = 13/380 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + ++ AL G PIQ + P + GRD+IG+A+TGTGKT AF +PIL +I
Sbjct: 11 LSLIPPVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQIDI 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDY 220
N +P LVLAPTRELA QV + F A L + +YGG Q++ L
Sbjct: 71 SNS------DPQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLRR 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGRVID IKR L L ++F+VLDEAD+ML +GF EDVE ++ + PQ+RQ
Sbjct: 125 AAHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVA 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + KYL +P +L + K AD I S Y K + +++
Sbjct: 185 LFSATMPAAIRKIAQKYLNSPQ--ELAVKNQSKTADTIRQRFWPVSGYHKLDALTRILEV 242
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G IVF +TK L+ + A+ YN PL GD+ Q+QRERT+ R G+ +IL+A
Sbjct: 243 EDFDG-MIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVA 301
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +I+Y++P E +VHR GRTGRAG++G AIL T ++ R + SIE
Sbjct: 302 TDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIE 361
Query: 460 RDVGCRFTQLPRIAVEGGGD 479
R R ++ + E D
Sbjct: 362 RSTRQRIERMEMPSTEVVND 381
>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 582
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 232/373 (62%), Gaps = 9/373 (2%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
AQ+A D + + + + QDI ALA GI FPIQ+ L A+ G D+
Sbjct: 4 AQNATTDEAQPSSTPQSSPKSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDI 63
Query: 140 IGRARTGTGKTLAFGIPILDKII-KFNEKHGRGRNP---LCLVLAPTRELAKQVEKEFHE 195
IG+A+TGTGKTL FG+P + +++ + +++ G + P L+L PTRELA QV +
Sbjct: 64 IGQAKTGTGKTLGFGLPTIQRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAV 123
Query: 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
++ + +YGG P Q+ L G++ VVGTPGR+IDL + AL L++V+ VVLDE
Sbjct: 124 ASKLRNARVATLYGGVPYEPQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDE 183
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ- 312
AD+ML +GF VE I+ LP +RQ+M+FSATMP + ++ KY+ P+ + D
Sbjct: 184 ADEMLDLGFLPSVEKIMGYLPTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHA 243
Query: 313 KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCE 371
K I +K ++G+++ H +G + ++FT+TKRDA R+A + A+ +
Sbjct: 244 KTKASIRQVVYRVHHMDKDEMLGRILRAHGRG-RTVIFTKTKRDAARVADELIARGFAAA 302
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431
PLHGD++Q RE+ L AFR+G+ +IL+ATDVAARG+DV +V +I++ +P +T++HRT
Sbjct: 303 PLHGDLNQGAREQALRAFRNGKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRT 362
Query: 432 GRTGRAGKKGSAI 444
GRTGRAG +G+A+
Sbjct: 363 GRTGRAGHEGTAV 375
>gi|399055613|ref|ZP_10743308.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398046822|gb|EJL39406.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 529
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 229/363 (63%), Gaps = 15/363 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLAGGDLIGQAQTGTGKTAAFGIPLVEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 65 TPANRVQA-------IVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P+ RQ+
Sbjct: 118 QGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITHMPEERQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLI 338
++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 178 LLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRILD 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G L
Sbjct: 236 SEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFL 293
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+DV NV +I+Y++P SE++VHR GRTGRAG+KG A+ + T ++ RQ+
Sbjct: 294 IATDVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMF 353
Query: 458 IER 460
I++
Sbjct: 354 IQK 356
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 233/373 (62%), Gaps = 12/373 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + +L R G + PIQ + A++G D+IG+A+TGTGKT+AFG+P+++
Sbjct: 3 NFSELNISESTLKSLERMGFEEATPIQAGTIPLAVEGHDIIGQAQTGTGKTVAFGVPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K+ + K + LV+APTRELA Q +E H+ + VYGG IS Q+RA
Sbjct: 63 KV---DPKEAAVQ---ALVIAPTRELAIQCSEELHKIGYGKRSKILSVYGGQDISRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR++D IKR L L V+ +VLDEAD+ML++GF ED+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRILDHIKRRTLKLENVKTLVLDEADEMLNMGFIEDINAILENVPAER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + + ++ P +V + + + D I + + + EK I+ +L
Sbjct: 177 QTLLFSATMPPAIRKIADTFMTEPQSVKI--KAKELTVDNIEQFFVKSQEREKFDILSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K IVF +TKR D L+HA++ + Y E +HGD+SQ++R L F++ + ++
Sbjct: 235 LNVQ-KPELAIVFGRTKRRVDELSHALSIRGYIAEGIHGDLSQAKRLSVLRQFKENKIDV 293
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ ++
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMSYLR 353
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 354 IVEETTKKRMTPL 366
>gi|410722381|ref|ZP_11361682.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
gi|410597125|gb|EKQ51762.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
Length = 527
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 235/380 (61%), Gaps = 22/380 (5%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L +S+++ A+A G + PIQ L P + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESLLFEDLKLSREMKRAIADMGFEEATPIQSLALPPILDGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L+K+ + +G ++L PTRELA QV +E + + T + VYGG PI Q
Sbjct: 62 VLEKL----DPTVKGVQ--AVILCPTRELAIQVAEEIKKLSKYKKTAVLPVYGGQPIERQ 115
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV ++GTPGRV+D I R L + +V+ ++LDEAD+ML +GF +D+E +LE++P
Sbjct: 116 IKALKRGVQIIIGTPGRVMDHIHRRTLRMDQVKMIILDEADEMLDMGFRDDIEFVLEQIP 175
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE----- 329
+ RQ ++FSATM P I +T KY NP +++ + Q+ I++ I +E
Sbjct: 176 RERQMLLFSATMSPQILGITRKYQNNP---EMLKVAHQE----ITVPEIQQIYFEVKEQM 228
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
K ++ +LI H +VF TKR DRL + + Y + LHGD+SQ+QR+R ++
Sbjct: 229 KLDLLTRLIDMH-NLKLSLVFCNTKRRVDRLVSNLQTRGYFADGLHGDMSQNQRDRVMNK 287
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FR G+ IL+ATDVAARG+DV +V+ + +Y++PN E +VHR GRTGRAGK G A +
Sbjct: 288 FRKGQIEILVATDVAARGIDVEDVEAVFNYDVPNNDEYYVHRIGRTGRAGKTGQAFTFVS 347
Query: 449 DQQARQVKSIERDVGCRFTQ 468
++ Q++ I+R R Q
Sbjct: 348 GKEIYQLRDIQRYTKVRIEQ 367
>gi|440731079|ref|ZP_20911124.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
gi|440375088|gb|ELQ11802.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
Length = 653
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL
Sbjct: 9 LLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPIL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
++ FN+ R P LVLAPTRELA QV + FH A P + VYGG P Q+
Sbjct: 69 SRL-DFNQ-----RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF +DVE +L++LP
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLERGTLDLSELRTLVLDEADEMLRMGFIDDVEAVLKKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ +FSATMP I+ + YL +P V ++ A+ Y + +++ ++
Sbjct: 183 SRQVALFSATMPTAIKRIAQTYLNDPAEV-IIASKTTTSANIRQRYWAVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E IVF +TK D LA + A+ ++GDI QSQRER + +DG+
Sbjct: 242 --ILEVEPFDAMIVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL + ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGM 359
Query: 455 VKSIER 460
+++IER
Sbjct: 360 LRAIER 365
>gi|407397666|gb|EKF27840.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi marinkellei]
Length = 634
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/386 (39%), Positives = 225/386 (58%), Gaps = 15/386 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G S D+ V AL +GI+ LFP+Q E M+G +++ +ARTG+GKTLAFGIPI
Sbjct: 49 GRPFSDFDLLPTTVEALKSQGITTLFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPI 108
Query: 158 LDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
++++ +K N RGR P ++ PTRELA QV + +YGG S Q
Sbjct: 109 VEQLARTMKSNNPPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTALYGGVAYSTQ 168
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF +D+E++L+++
Sbjct: 169 ERALYNGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVA 228
Query: 275 Q---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ N Q+++FSAT+P W+ + + K+ +D+VG + A I Y
Sbjct: 229 EQNGSTEGNLNHQTLLFSATVPEWVHTCSF-IPKDKEFIDMVGQGTMRAAHTIKFYRRKC 287
Query: 326 SMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRER 384
E ++ L+ ++ + G+ +VFT TK+D L+ K + + LHGD+ Q QRE
Sbjct: 288 HFSEVSCMLADLVKVYSGRHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRES 346
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
T+ +FRD +F++LIATDVAARGLD+P VDL+I P + F+HR GRTGRAG+KG +
Sbjct: 347 TMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCV 406
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLP 470
L++ + V+ IER +F LP
Sbjct: 407 LLHQPKDEYIVERIERHAKIKFEVLP 432
>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 574
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 223/349 (63%), Gaps = 9/349 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ QDI ALA GI+ FPIQ+ L A+ G+D+IG+A+TGTGKTL FG+P + +++ +
Sbjct: 21 VRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVGRD 80
Query: 166 EKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
++ P L+L PTRELA QV ++ +A + +YGG PI Q L
Sbjct: 81 DEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAELLR 140
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G++ VVGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF VE IL LP++RQS
Sbjct: 141 RGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDRQS 200
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD-QKLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + ++ +Y+ P+ + D K I +K +IG+++
Sbjct: 201 MLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMIGRIL 260
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ ++FT+TKRDA R+A + + + PLHGD++Q RE+ L AFR G+ +IL
Sbjct: 261 RATGR-GRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDIL 319
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+ATDVAARG+DV +V +I++ +P +T++HRTGRTGRAG +G+A+ +
Sbjct: 320 VATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTL 368
>gi|401414811|ref|XP_003871902.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 684
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 224/380 (58%), Gaps = 13/380 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI++++
Sbjct: 89 SEFEMNPTVVKALQSRGIESMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVERL 148
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+K RGR P ++ PTRELA QV+ + L +YGG ++Q R L G
Sbjct: 149 LKLPSHLIRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRSG 208
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN----- 276
VD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 209 VDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVG 268
Query: 277 -----RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 269 AEKPVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEIS 327
Query: 332 SIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +FR
Sbjct: 328 SMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSFR 386
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
D +F++LIATDVAARGLD+P VDL+I P + F+HR GRTGRAG+KG +L+Y +
Sbjct: 387 DNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLYQPR 446
Query: 451 QARQVKSIERDVGCRFTQLP 470
+ V+ IER +F LP
Sbjct: 447 EEYVVERIERHAKMKFDVLP 466
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 227/371 (61%), Gaps = 13/371 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++++VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDV ARGLDV V +I+Y++P SE++VHR GRTGRAG++G AIL + ++ R + SIE
Sbjct: 303 TDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIE 362
Query: 460 RDVGCRFTQLP 470
+ +P
Sbjct: 363 KTTKQPIEAMP 373
>gi|383830775|ref|ZP_09985864.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383463428|gb|EID55518.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 588
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 233/376 (61%), Gaps = 11/376 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL+ G + PIQ A + + G D++G+A TGTGKT AF +P+L ++
Sbjct: 41 LGLRPELLRALSDLGYEEPTPIQMAAIPALLDGADVVGQAATGTGKTAAFSLPVLHRLAD 100
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYG 221
+ R P LVL PTRELA QV + + L + VYGG P+ Q+R+L+ G
Sbjct: 101 LD----RNGKPSALVLVPTRELAAQVCEAMYRYGRHLGIRVVPVYGGQPMGRQLRSLETG 156
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL++ P +RQ+M+
Sbjct: 157 VDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDQTPTDRQTML 216
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
FSATMPP I + +YL+ P ++L +S A ++ + KP+ +G+++
Sbjct: 217 FSATMPPRISGMVRRYLREPRRIELTRAESMSGDAAAVTQVAYVVPRGHKPAALGRVLDI 276
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
A +VF +T+ + DRL M + Y E LHG + QSQR R + R G ++++A
Sbjct: 277 EAPEA-TVVFCRTREEVDRLTEIMNGRGYRAEALHGGMDQSQRNRVVGRLRAGTADLVVA 335
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ + +++Y++P+ E +VHR GR GRAG++GSAI + ++ R +K+IE
Sbjct: 336 TDVAARGLDIDQLTHVVNYDVPSAPEIYVHRIGRVGRAGREGSAITLAEPREHRMIKTIE 395
Query: 460 RDVGCRFT--QLPRIA 473
R G + +LP +A
Sbjct: 396 RVTGQTISVRKLPTVA 411
>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
Length = 606
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 227/361 (62%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ L +G + PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 65 SEALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL----- 119
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
GR P LVLAPTRELA QV F A P L+ + +YGG+ Q+ AL GVD
Sbjct: 120 -DGRSNTPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALKRGVD 178
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++FS
Sbjct: 179 VVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFS 238
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP IR L+ +YL+ P + + + + A I SI K + +++ E
Sbjct: 239 ATMPNEIRRLSKRYLREPAEITI--KTKDREAKRIRQRSITLQNAHKIEALNRVL-EAVT 295
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK +A ++ A ++ L+GD+ Q+QRERT+ R G NIL+ATDV
Sbjct: 296 GEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDV 355
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL T ++ R V ++ER V
Sbjct: 356 AARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLERAV 415
Query: 463 G 463
Sbjct: 416 N 416
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/383 (40%), Positives = 234/383 (61%), Gaps = 8/383 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+GL LDI + AA++ G PIQ A + P M GRD++G A+TGTGKT AF IP
Sbjct: 15 DGLTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIP 74
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISH 213
IL ++ + G R P LVLAPTRELA QV + F P + + +YGG
Sbjct: 75 ILSRLEGAGDGSG-PRKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGV 133
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L G +VGTPGRVID + R L++SE++F+VLDEAD+ML++GFAEDVE IL
Sbjct: 134 QLAGLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAET 193
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P ++Q +FSATMP IR L +YL +P + + S A I+ + S K
Sbjct: 194 PDDKQVALFSATMPSAIRRLAQRYLNDPQEITV--KSKTATAQNITQRYLQVSHQRKLDA 251
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ + + E IVF +TK+ + LA + ++ ++ ++GD++Q+QRERT++ + G
Sbjct: 252 LTRFL-EVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSG 310
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++
Sbjct: 311 GIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRER 370
Query: 453 RQVKSIERDVGCRFTQLPRIAVE 475
++SIER T++ +VE
Sbjct: 371 HLLRSIERATRSTLTEIGLPSVE 393
>gi|398814336|ref|ZP_10573017.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398036605|gb|EJL29814.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 529
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 228/363 (62%), Gaps = 15/363 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 65 TPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P RQ+
Sbjct: 118 QGVQIVVGTPGRVMDHLRRKTLKLDNVHTLVLDEADEMLDMGFIEDIETIINHMPDERQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLI 338
++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 178 LLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRILD 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G L
Sbjct: 236 SEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFL 293
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+DV NV +I+Y++P SE++VHR GRTGRAG+KG A+ + T ++ RQ+
Sbjct: 294 IATDVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMF 353
Query: 458 IER 460
I++
Sbjct: 354 IQK 356
>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 529
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 228/363 (62%), Gaps = 15/363 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 65 TPANRVQA-------IVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P RQ+
Sbjct: 118 QGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPDERQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLI 338
++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 178 LLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRILD 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G L
Sbjct: 236 SEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFL 293
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+DV NV +I+Y++P SE++VHR GRTGRAG+KG A+ + T ++ RQ+
Sbjct: 294 IATDVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMF 353
Query: 458 IER 460
I++
Sbjct: 354 IQK 356
>gi|399527936|ref|ZP_10767613.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361526|gb|EJN45278.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 588
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 226/365 (61%), Gaps = 12/365 (3%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISL 320
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ + + +
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQ 291
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
K ++ +++ + G+ ++F +TKR A RL + A+ + LHGD+ Q
Sbjct: 292 VIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQ 350
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
RE+ L AFR+G+ ++L+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG
Sbjct: 351 GAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGN 410
Query: 440 KGSAI 444
G+A+
Sbjct: 411 SGTAV 415
>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 694
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 232/373 (62%), Gaps = 11/373 (2%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+ + + + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF
Sbjct: 45 ADENAVKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAF 104
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTP 210
+P L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+
Sbjct: 105 AVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSA 164
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I
Sbjct: 165 YGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIF 224
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
++ P++RQ +FSATMP IR ++ +YL +P + + K + G ++ +
Sbjct: 225 QQTPEDRQVALFSATMPGQIRRMSKQYLNDPAEISV----KTKTSTGTNIRQRYLQIM-G 279
Query: 331 PSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
P + + I E + I F +TK + LA + ++ + ++GDI Q QRERT+
Sbjct: 280 PQKLDAMTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVD 339
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
A ++GR +IL+ATDVAARGLDV + +I+Y++P+ +E++VHR GRTGRAG+ G AIL
Sbjct: 340 ALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFM 399
Query: 448 TDQQARQVKSIER 460
T ++ +++IE+
Sbjct: 400 TPREKYLLRAIEK 412
>gi|33863354|ref|NP_894914.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9313]
Length = 635
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 223/361 (61%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+++++
Sbjct: 91 SEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERL----- 145
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
H G P LVLAPTRELA QV F A P L + VYGG Q+ L GVD
Sbjct: 146 -HDHGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGVD 204
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++D +++ L+ S ++ +VLDEAD+ML +GF +DVE ILE+LP+ RQ ++FS
Sbjct: 205 VVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEERQMVLFS 264
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP IR L+ +YL P + + DQ+ A I I K + +++ E
Sbjct: 265 ATMPSEIRRLSKRYLHEPAEIT-IKSRDQE-ARLIRQRCITLQNSHKLEALRRVL-EAFT 321
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK +A A+ A ++ L+GD+ Q+QRERT+ R G NIL+ATDV
Sbjct: 322 GEGVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDV 381
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL ++ R V ER V
Sbjct: 382 AARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGFERAV 441
Query: 463 G 463
G
Sbjct: 442 G 442
>gi|410672237|ref|YP_006924608.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171365|gb|AFV25240.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 431
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 233/373 (62%), Gaps = 24/373 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S+L++SQ I+ A+ G + PIQ + M+G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESITFSQLNLSQSIINAIKDIGYEEPTPIQAQAIPLIMEGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
L+ + +FN+ LVL PTRELA QV E + + L + +YGG +
Sbjct: 62 ALELVDPEFNDVQ-------VLVLCPTRELANQVADELTKLSAYQKLRILPIYGGQSLDR 114
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRV+D I+R LNL V VVLDEAD+ML +GF ED+E+IL ++
Sbjct: 115 QIKALRRGVHIIIGTPGRVMDHIERKTLNLENVAMVVLDEADEMLDMGFREDIELILTKV 174
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---- 329
P +RQ+++FSATMP I LT ++ ++P V + + +++ ++ S +E
Sbjct: 175 PDDRQTILFSATMPALIMKLTKRFQRDPQLV-------KTIHKKVTVPNVEQSYFEVKFH 227
Query: 330 -KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
KP ++ +LI + +VF TKR D L + + Y + LHGD+ Q QRER ++
Sbjct: 228 TKPEVLCRLIDIYDVKS-SLVFCNTKRAVDELVDTLKTRGYLADGLHGDMKQQQRERVMA 286
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+FR G L+ATDVAARG+DV N++++ +++LP E++VHR GRTGRAG++G A
Sbjct: 287 SFRKGDIETLVATDVAARGIDVENIEVVFNFDLPQDEESYVHRIGRTGRAGRQGRAFTFV 346
Query: 448 TDQQARQVKSIER 460
T ++ ++KSI++
Sbjct: 347 TGRELYKIKSIQK 359
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 230/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + N++L++P+ V + +S Q + I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANQHLRSPVHVRI--ESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERSTNSRISPM 370
>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
Length = 560
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/358 (43%), Positives = 231/358 (64%), Gaps = 13/358 (3%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ AL + G + PIQ A + M GRD++G+A+TGTGKT AF +P+L +I +
Sbjct: 26 LLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLARI------NL 79
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVV 226
R+P LVLAPTRELA QV + F A P L + +YGG+ Q+ L GV VV
Sbjct: 80 EARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRRGVHVVV 139
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRV+D +++ LN+S+++ +VLDEAD+ML +GF +DV+ +LE+LP RQ ++FSATM
Sbjct: 140 GTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVVLFSATM 199
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
PP I+ ++ ++L+NP +++ + + A I I +K S + +++ H GG
Sbjct: 200 PPEIKRISQQHLQNP--AEVIIRTQKADASRIRQRHILLPHQQKLSALLRVLEAHGPGG- 256
Query: 347 CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F +TK +A A+ A+ C L+GD+ QS RERT+ + GR ++L+ATDVAAR
Sbjct: 257 VIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVATDVAAR 316
Query: 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVG 463
GLDV + L+++Y+ P SE +VHR GRTGRAG++G AIL + ++ R + S+ER VG
Sbjct: 317 GLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSLERAVG 374
>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
Length = 580
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 224/347 (64%), Gaps = 9/347 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-KF 164
+ QDI ALA GI FPIQ+ L A+ G D+IG+A+TGTGKTL FG+P + +++ +
Sbjct: 30 VRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQRVVGRD 89
Query: 165 NEKHGRGRNP---LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
+++ G + P L+L PTRELA QV + ++ + +YGG P Q+ L
Sbjct: 90 DDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEPQVEQLT 149
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G++ VVGTPGR+IDL + AL L++V+ VVLDEAD+ML +GF VE I+ LP +RQ+
Sbjct: 150 KGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYLPTDRQT 209
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + ++ KY+ P+ + D K I +K ++G+++
Sbjct: 210 MLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDEMLGRIL 269
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
H +G + ++FT+TKRDA R+A + A+ + PLHGD++Q RE+ L AFR+G+ +IL
Sbjct: 270 RAHGRG-RTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDIL 328
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ATDVAARG+DV +V +I++ +P +T++HRTGRTGRAG +G+A+
Sbjct: 329 VATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAV 375
>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
Length = 565
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 222/349 (63%), Gaps = 9/349 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ QDI ALA GI+ FPIQ+ L A+ G+D+IG+A+TGTGKTL FG+P + +++ +
Sbjct: 21 VRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVGRD 80
Query: 166 EKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
++ P L+L PTRELA QV ++ +A + +YGG PI Q L
Sbjct: 81 DEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAELLR 140
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G++ VGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF VE IL LP++RQS
Sbjct: 141 RGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDRQS 200
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD-QKLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + ++ +Y+ P+ + D K I +K +IG+++
Sbjct: 201 MLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMIGRIL 260
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ ++FT+TKRDA R+A + + + PLHGD++Q RE+ L AFR G+ +IL
Sbjct: 261 RATGR-GRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDIL 319
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+ATDVAARG+DV +V +I++ +P +T++HRTGRTGRAG +G+A+ +
Sbjct: 320 VATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTL 368
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 230/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + N++L++P+ V + +S Q + I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANQHLRSPVHVRI--ESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERSTNSRISPM 370
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 230/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + N++L++P+ V + +S Q + I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANQHLRSPVHVRI--ESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERSTNSRISPM 370
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/369 (42%), Positives = 230/369 (62%), Gaps = 12/369 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++S +++ ++ R G + PIQ+A + A+QGRD+IG+A+TGTGKT AFG+P+L+KI
Sbjct: 6 LELSNELLTSVERAGFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPMLEKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
N + LV+APTRELA Q ++E + + VYGG I Q+R L
Sbjct: 66 ANHQLQ------GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDR 119
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P+ RQ+++
Sbjct: 120 PHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQTLL 179
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMPP I+S+ K++KNP V + + + AD I Y + + YEK I+ +L+
Sbjct: 180 FSATMPPAIKSIGVKFMKNPEHVQI--KAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQ 237
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G +IL+AT
Sbjct: 238 TP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILVAT 296
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + + IE
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGISVTFVTPNEMSYLHVIEN 356
Query: 461 DVGCRFTQL 469
R + +
Sbjct: 357 LTKKRMSPM 365
>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD, partial [Actinomyces odontolyticus
F0309]
gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 502
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 227/365 (62%), Gaps = 12/365 (3%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA++ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDEKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISL 320
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ + + +
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQ 291
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
K ++ +++ + G+ ++F +TKR A RL + A+ + LHGD+ Q
Sbjct: 292 VIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQ 350
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
RE+ L AFR+G+ ++L+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG
Sbjct: 351 GAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGN 410
Query: 440 KGSAI 444
G+A+
Sbjct: 411 SGTAV 415
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/385 (40%), Positives = 230/385 (59%), Gaps = 35/385 (9%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +++DI+ A+ G + IQK + ++G D+IG+A+TGTGKTLAFG P+++KI K
Sbjct: 9 LGLNEDILKAINELGFEEPSKIQKEAIPVVLEGFDVIGQAQTGTGKTLAFGAPVINKIKK 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
K +V+ PTRELA QV E + T+ VYGG PI Q+RA+ G
Sbjct: 69 STGKIS------SIVITPTRELAIQVNDEISRIGKYTRVRTLPVYGGKPIDRQIRAIKQG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD +VGTPGRV+DLI+R ++LS V F+VLDEAD+ML +GF +D+E I+ P++RQ+M+
Sbjct: 123 VDVLVGTPGRVLDLIRRRVVDLSRVNFLVLDEADEMLDMGFIDDIEEIIRNCPEDRQTML 182
Query: 282 FSATMPPWIRSLTNKYL----------KNPLTVDLVGDSDQKLADGISLYSIATSM-YEK 330
FSATMPP I+ L Y+ KN +TV V ++ S+ + Y++
Sbjct: 183 FSATMPPQIKRLAKSYMKEDMKHISIVKNTITVSTVSQYYFEIKQNNRFESLCRILDYDE 242
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAF 389
PS I+F +TK+ D L + + YN E +HGD++Q R TL F
Sbjct: 243 PS-------------SAIIFCKTKKGVDELVEGLQVRGYNVEGMHGDMTQDHRMNTLRKF 289
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
++G L+ATDVAARG+D+ ++ + +YELP S+++VHR GRTGRA ++G+A + T
Sbjct: 290 KEGNLEFLVATDVAARGIDIESITHVFNYELPQDSDSYVHRIGRTGRANRQGTAYTLVTA 349
Query: 450 QQARQVKSIERDVG--CRFTQLPRI 472
++ R +K IE+D + +LP I
Sbjct: 350 REYRFLKQIEKDTKGTIKRKELPTI 374
>gi|403508500|ref|YP_006640138.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402803335|gb|AFR10745.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 513
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 158/361 (43%), Positives = 224/361 (62%), Gaps = 14/361 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S +I AL GI + FPIQ+ L A+ G D+IG+ARTGTGKTLAFG+P+L + +
Sbjct: 1 MSPEISDALEAEGIVEPFPIQELALPIALNGSDIIGQARTGTGKTLAFGLPLL----QLS 56
Query: 166 EKH-GRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGV 222
++ G + P LV+ PTRELA QV + ++ + VYGG Q+ L G
Sbjct: 57 QREPGTAKRPRALVVVPTRELAIQVAADLTTASKRSGGRILTVYGGRSYEPQINGLQEGT 116
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR++DL K+ L L V VVLDEAD+ML +GF D+E IL + P RQ+M+F
Sbjct: 117 DVVVGTPGRLLDLEKQKHLRLDGVASVVLDEADKMLDLGFLPDIERILTKTPAERQTMLF 176
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQ----KLADGISLYSIATSMYEKPSIIGQLI 338
SATMP I +L+ YL P V GD ++ + I+ ++ T +KP ++ +L+
Sbjct: 177 SATMPSEIVTLSRNYLTRPTHVR-AGDDNEIDGSAITSRIAQHAFRTHQMDKPEMLARLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ +VF QTKR DR+A + ++ + +HGD+ QSQRER L AFR+G+ NIL
Sbjct: 236 -QAEDHGQSMVFCQTKRACDRVASDLKSRGFAAAAVHGDLGQSQRERALRAFRNGKINIL 294
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV +V +++YE P +T+ HR GRTGRAG+ G+A+ Q+ + K
Sbjct: 295 VATDVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRTGTAVTFVDWQEMPRWKL 354
Query: 458 I 458
I
Sbjct: 355 I 355
>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 654
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 225/377 (59%), Gaps = 15/377 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 93 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 146
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 147 ALKNGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 206
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G++ + + EK + +
Sbjct: 207 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGEN--RTVSKVEQQFWVVKGVEKDEAMSR 264
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E IVF +T++D +RLA + ++ + LHGDI QS RERT+ + G +
Sbjct: 265 LL-ETEDTDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVID 323
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+ G AIL+ Q R +
Sbjct: 324 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRML 383
Query: 456 KSIERDVGCRF--TQLP 470
++IER R QLP
Sbjct: 384 RTIERVTKSRMEEIQLP 400
>gi|424896364|ref|ZP_18319938.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180591|gb|EJC80630.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 593
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 228/373 (61%), Gaps = 10/373 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F + L V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKS-HLRVNVVVGGVSINKQQL 166
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 167 QLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 226
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL +P+TV++ K AD + Y +K ++
Sbjct: 227 RQTMLFSATMPKSIADLAGEYLVDPVTVEVTPPG--KAADKVEQYVHFVGGKNDKTELLR 284
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G + IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 285 KSLTENPDG-RAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSI 343
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +AR
Sbjct: 344 KTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARL 403
Query: 455 VKSIERDVGCRFT 467
++ IER +G T
Sbjct: 404 LRDIERLMGIDIT 416
>gi|424882925|ref|ZP_18306557.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519288|gb|EIW44020.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 605
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 226/372 (60%), Gaps = 8/372 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 167
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 168 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 227
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 228 QTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVAGKNDKTELLRK 285
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 286 SLTENPDG-RAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 344
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +AR +
Sbjct: 345 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLL 404
Query: 456 KSIERDVGCRFT 467
+ IER +G T
Sbjct: 405 RDIERLMGIDIT 416
>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 654
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 225/377 (59%), Gaps = 15/377 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 93 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 146
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 147 ALKNGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 206
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G++ + + EK + +
Sbjct: 207 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGEN--RTVSKVEQQFWVVKGVEKDEAMSR 264
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E IVF +T++D +RLA + ++ + LHGDI QS RERT+ + G +
Sbjct: 265 LL-ETEDTDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVID 323
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+ G AIL+ Q R +
Sbjct: 324 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRML 383
Query: 456 KSIERDVGCRF--TQLP 470
++IER R QLP
Sbjct: 384 RTIERVTKSRMEEIQLP 400
>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 538
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/352 (42%), Positives = 217/352 (61%), Gaps = 10/352 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +DIVA+L+ GI FPIQ L A+ G D+IG+A+TGTGKTL FGIP L ++
Sbjct: 29 ADLKVREDIVASLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQRV 88
Query: 162 IKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM 215
++ +K P L++APTRELA QV + +++ ++ +YGG P Q+
Sbjct: 89 VREGDKGYEDLEFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQI 148
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL G D +VGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF DVE IL LP
Sbjct: 149 NALKAGTDVIVGTPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAALPP 208
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP + ++ +Y+ P + GD D I +K +
Sbjct: 209 VRQAMLFSATMPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNMDKDEM 268
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ + GK I+FTQTKR A RL+ + + +N LHGD+ Q RE+ L AFR G
Sbjct: 269 VARLLQAEGR-GKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRSG 327
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ IL+ATDVAARG+DV +V +++ + P+ T++HR GRTGRAG G+A+
Sbjct: 328 KVEILVATDVAARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAV 379
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 234/377 (62%), Gaps = 14/377 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++S+K+E + S+ ++ L +G + PIQKA M GRD++G+A+TGTGKT
Sbjct: 50 EESTKEES-GFAGFGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKT 108
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYG 207
AF +P+L+++ GR P LVLAPTRELA QV F A P L+ + +YG
Sbjct: 109 AAFALPLLERL------EGRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYG 162
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ Q+ L GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML +GF +DVE
Sbjct: 163 GSDFRSQIHTLKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVE 222
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL++LP+ RQ ++FSATMP IR L+ +YL+ P + + + + A I SI
Sbjct: 223 WILDQLPEERQVVLFSATMPNEIRRLSKRYLQEPAEITI--KTKDREAKRIRQRSITMQN 280
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E G I+F +TK +A ++ A ++ L+GD+ Q+QRERT+
Sbjct: 281 SHKIEALNRVL-EAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTV 339
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
R G NIL+ATDVAARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL
Sbjct: 340 DRLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILF 399
Query: 447 YTDQQARQVKSIERDVG 463
T ++ R V ++ER V
Sbjct: 400 VTPRERRFVGNLERAVN 416
>gi|376290134|ref|YP_005162381.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103530|gb|AEX67127.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 682
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 238/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPEAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|424885553|ref|ZP_18309164.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393177315|gb|EJC77356.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 593
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 226/372 (60%), Gaps = 8/372 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + L V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSHLRVNVVVGGVSINKQQLQ 167
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 168 LEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKR 227
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+TV++ K AD + Y +K ++ +
Sbjct: 228 QTMLFSATMPKSIADLAGEYLVDPVTVEVTPPG--KAADKVEQYVHFVGGKNDKTELLRK 285
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 286 SLTENPDG-RAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 344
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +AR +
Sbjct: 345 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLL 404
Query: 456 KSIERDVGCRFT 467
+ IER +G T
Sbjct: 405 RDIERLMGIDIT 416
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 231/373 (61%), Gaps = 12/373 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + +L R G + PIQ + A++G D+IG+A+TGTGKT+AFG+P+++
Sbjct: 3 NFSELNISESTLKSLQRMGFEEATPIQAGTIPLAVEGHDIIGQAQTGTGKTVAFGVPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
I NE + LV+APTRELA Q +E H+ + VYGG I Q+RA
Sbjct: 63 NI-DPNETSIQ-----ALVIAPTRELAIQCSEEIHKIGYGKRSKILSVYGGQDIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR++D IKR L L V+ +VLDEAD+ML++GF ED+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRILDHIKRRTLKLENVKTLVLDEADEMLNMGFIEDINAILENVPNER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + + ++ P +V + + + D I Y + + EK I+ +L
Sbjct: 177 QTLLFSATMPPAIRKIADTFMTEPQSVKI--KAKELTVDNIDQYFVKSQEREKFDILSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K IVF +TKR D L+HA++ + Y E +HGD+SQ++R L F++ + ++
Sbjct: 235 LNVQ-KPELAIVFGRTKRRVDELSHALSIRGYVAEGIHGDLSQAKRLSVLRQFKENKIDV 293
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ ++
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMNYLR 353
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 354 IVEETTKKRMTPL 366
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 230/363 (63%), Gaps = 24/363 (6%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S + + L +RGI++LFPIQ D++G+A+TGTGKTLAF +P+++++IK +
Sbjct: 22 STETMEILKKRGINRLFPIQAKSFNYIFNKNDVLGKAKTGTGKTLAFVLPVIERLIKKGK 81
Query: 167 KHGR--GRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRALDYGV 222
H GR PL LVL PTRELA+QV EF + + +YGG+P Q++ + GV
Sbjct: 82 FHTNEIGRKPLVLVLLPTRELAQQVSNEFELMKGNNRYKVVSIYGGSPEYPQIQEVKKGV 141
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL---------ERL 273
D +VG PGRV+D I+RN LN+S++ ++LDEAD+ML +GF E V+ ++ E
Sbjct: 142 DIIVGCPGRVLDFIERNILNVSKINVLILDEADKMLEMGFKEYVDKVIDFVKKQTSEENT 201
Query: 274 PQNR--QSMMFSATMPPWIRSLTNKYLKN-PLTVDLVG---DSDQKLADG----ISLYSI 323
+NR Q ++FSAT+P WI+ + N+ + N +TVD+ D ++ +D I +I
Sbjct: 202 DKNRRFQILLFSATVPSWIKKIVNEIMSNDTVTVDVTNISVDGNEDSSDSGNTRIRHLAI 261
Query: 324 ATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQR 382
+ ++ +++ +IT +A GKCI+FT+TK+ A+ ++ S C+ LHGDI QSQR
Sbjct: 262 QCAYPQRTALLKDIITMYAGIHGKCIIFTETKQTANEISMRSTISDMCQVLHGDIQQSQR 321
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
E L AF++GR+ L+ATDVAARGL + +V ++I P +T++HR GRTGRAGK G+
Sbjct: 322 EIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRAGRTGRAGKFGT 381
Query: 443 AIL 445
AIL
Sbjct: 382 AIL 384
>gi|398848835|ref|ZP_10605629.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398246946|gb|EJN32419.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 561
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 232/372 (62%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 ------DVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++ L
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIDQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
++ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQ 358
Query: 457 SIERDVGCRFTQ 468
IER G + +
Sbjct: 359 VIERVTGQKVAE 370
>gi|333894503|ref|YP_004468378.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
Length = 588
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 163/376 (43%), Positives = 225/376 (59%), Gaps = 23/376 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P RQ+
Sbjct: 126 GVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--- 337
+FSATMP I+ +T +YLK+P V K+A +S S Y + + +L
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHV--------KIASKVSTASTIRQRYCQVAPHHKLEAL 237
Query: 338 --ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E + I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G
Sbjct: 238 TRIMEVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNI 297
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDV ARGLDV V +I+Y++P SE++VHR GRTGRAG+ G AIL + ++ R
Sbjct: 298 DILVATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRM 357
Query: 455 VKSIERDVGCRFTQLP 470
+ SIE+ +P
Sbjct: 358 LFSIEKTTKQPIEVMP 373
>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
Length = 555
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 165/438 (37%), Positives = 251/438 (57%), Gaps = 19/438 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ QDIV ALA GI+ FPIQ L A+ G+D+IG+A+TGTGKTL FGIP L + + +
Sbjct: 39 VRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQRAVGRD 98
Query: 166 ----EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
E+ + P L++ PTRELA QV + +A + + +YGG P Q+ L+
Sbjct: 99 DAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYESQIAELE 158
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV+ VVGTPGR+IDL +++ L+LS V+ VVLDEAD+ML +GF DVE +L +P RQ+
Sbjct: 159 KGVEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLATVPAVRQT 218
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP + ++ +Y+ P+ + + I +K ++ +++
Sbjct: 219 MLFSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDEVVARILQ 278
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ G+ I+FT+TKR A +LA + + + PLHGD+ Q RE+ L AFR+ + ++L+
Sbjct: 279 AEGR-GRSIIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRNSKVDVLV 337
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV +V +I+++ P +T++HRTGRTGRAG KG+AI + + I
Sbjct: 338 ATDVAARGIDVEDVTHVINFQCPEDEKTYLHRTGRTGRAGNKGTAITFVDWDDVPRWRLI 397
Query: 459 ERDVGCRFTQLPRIAVEGGGDMYNDMG-GRSGYGSMRDRQYADTGFDRSSRMGDSGFGR- 516
++ + + P +Y+D+ R+ G + Q G D + M D G R
Sbjct: 398 DKALELGIPE-PVETYSSSEHLYSDLNIPRTAKGKLPKSQRTLEGLD-AEEMEDLGDARP 455
Query: 517 -------SGGYRSPGSGR 527
SGG R+ GR
Sbjct: 456 RRDDKRSSGGPRNGSGGR 473
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 230/367 (62%), Gaps = 15/367 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ + S++++ ++ +G S PIQKA + + GRD++G+A+TGTGKT AF +PIL+++
Sbjct: 39 SEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERL 98
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
K N H P LVLAPTRELA QV + F + P + +YGG+ +Q+ L
Sbjct: 99 -KKNVGH-----PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTL 152
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV+D +++ LN S + +VLDEAD+ML +GF +DVE ILE+LP+ RQ
Sbjct: 153 RRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQ 212
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
++FSATMP IR L+ KYL +P + + + ++L Y ++Y+ ++ Q
Sbjct: 213 LVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIR--QRYISVQNVYKVNAL--QR 268
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E I+F +TK +A + + YN L+GDI Q+QRERT+ R G NI
Sbjct: 269 VLEAVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINI 328
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLDV + L+I+Y++P E +VHR GRTGRAG+ G AIL ++ +
Sbjct: 329 LVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLS 388
Query: 457 SIERDVG 463
++ER VG
Sbjct: 389 NLERAVG 395
>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Length = 645
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 169/405 (41%), Positives = 247/405 (60%), Gaps = 27/405 (6%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I+AA+A G S PIQKA + M GRD++G+A+TGTGKT AF +P+L ++
Sbjct: 95 EILAAVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARL------D 148
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAV 225
+ R P LVL PTRELA QV + F+ A P + + +YGG Q+ L GV V
Sbjct: 149 PQQRTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKRGVQIV 208
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DVE +LE+LPQ RQ ++FSAT
Sbjct: 209 VGTPGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVVLFSAT 268
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSIIGQLITEHA 342
MP IR L+ KYL+NP V + QK A+ ++ + + + ++ L E +
Sbjct: 269 MPSEIRRLSRKYLQNPAEVTI----QQKGAENSTIRQRHLVVHGAQKLEALTRVLEAESS 324
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
+G I+F +TK ++ A+ + Y+ L+GD+ Q+QRERT+ R G+ N+L+ATD
Sbjct: 325 EG--VIIFARTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVATD 382
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461
VAARGLDV + L+I+Y++P SE +VHR GRTGRAG++G AIL T ++ R + +ER
Sbjct: 383 VAARGLDVDRITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPRERRFLGGLERA 442
Query: 462 VGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRS 506
VG T + V D+ +S +R+R A G RS
Sbjct: 443 VGKAITPM---EVPTNADI-----NQSRLDRLRERVTALVGTPRS 479
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 230/367 (62%), Gaps = 15/367 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ + S++++ ++ +G S PIQKA + + GRD++G+A+TGTGKT AF +PIL+++
Sbjct: 39 SEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERL 98
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
K N H P LVLAPTRELA QV + F + P + +YGG+ +Q+ L
Sbjct: 99 -KKNVGH-----PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTL 152
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV+D +++ LN S + +VLDEAD+ML +GF +DVE ILE+LP+ RQ
Sbjct: 153 RRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQ 212
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
++FSATMP IR L+ KYL +P + + + ++L Y ++Y+ ++ Q
Sbjct: 213 LVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIR--QRYISVQNVYKVNAL--QR 268
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E I+F +TK +A + + YN L+GDI Q+QRERT+ R G NI
Sbjct: 269 VLEAVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINI 328
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLDV + L+I+Y++P E +VHR GRTGRAG+ G AIL ++ +
Sbjct: 329 LVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLS 388
Query: 457 SIERDVG 463
++ER VG
Sbjct: 389 NLERAVG 395
>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 627
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 227/377 (60%), Gaps = 15/377 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KVNLSQHK------PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L+L EV VLDEAD+ML +GF +DV I+E+ P++
Sbjct: 121 ALKNGAHIVVGTPGRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPES 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G++ + + EK + +
Sbjct: 181 AQRVLFSATMPPIVKEIVDRFLRNPERIDVAGEN--RTVSKVEQQFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E IVF +T++D +RLA + ++ + LHGDI QS RERT+ + G +
Sbjct: 239 LL-ETEDTDASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+ G AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRML 357
Query: 456 KSIERDVGCRF--TQLP 470
++IER R QLP
Sbjct: 358 RTIERVTKSRMEEIQLP 374
>gi|345876610|ref|ZP_08828376.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226322|gb|EGV52659.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 628
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 162/376 (43%), Positives = 227/376 (60%), Gaps = 23/376 (6%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S D + L +S+ I+ ALA G PIQ+A + P ++G+D++G+A+TGTGKT AF
Sbjct: 6 STDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAF 65
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTP 210
+P+L +I + K P LVLAPTRELA QV + A + + +YGG P
Sbjct: 66 ALPLLSRI-DLSRK-----TPQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
HQ+R L GV VVGTPGRV+D I+R L L + +VLDEAD+ML +GF +DVE IL
Sbjct: 120 YDHQLRQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
E+ PQ RQ +FSATMP IR + ++L +P + K+A S + Y +
Sbjct: 180 EQTPQTRQIALFSATMPSIIRKVAQRHLNDPTEI--------KIAAKTSTATTIRQRYWQ 231
Query: 331 PSIIGQL-----ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
S + +L I E +VF +TK LA + A+ Y E L+GDI Q QRER
Sbjct: 232 VSGLHKLDALTRILECESFDAMLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRER 291
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
T+ F+ GR +IL+ATDVAARGLDV + +I+Y++P +E++VHR GRTGRAG+ G AI
Sbjct: 292 TVERFKAGRLDILVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAGRTGDAI 351
Query: 445 LIYTDQQARQVKSIER 460
L + ++ R +++IER
Sbjct: 352 LFVSPKERRLLRTIER 367
>gi|431801411|ref|YP_007228314.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430792176|gb|AGA72371.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 559
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 231/372 (62%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 ------DVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++ L
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIEQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEEFDA--LIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
++ATDVAARGLDVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQ 358
Query: 457 SIERDVGCRFTQ 468
IER G + +
Sbjct: 359 VIERVTGQKVAE 370
>gi|357418161|ref|YP_004931181.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355335739|gb|AER57140.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 646
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 157/386 (40%), Positives = 236/386 (61%), Gaps = 13/386 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+ S L +S ++AALA G PIQ A + + GRD++G A+TGTGKT AF +P+
Sbjct: 9 AVPFSALGLSAPVMAALATVGYESPSPIQAATIPALLAGRDVLGTAQTGTGKTAAFALPV 68
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQ 214
L N G+ P LVLAPTRELA QV + F + S P + +YGG + Q
Sbjct: 69 LS-----NLDLAAGK-PQALVLAPTRELAIQVAEAFQKYAASIPGFHVLPIYGGQAYAPQ 122
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV VVGTPGRVID ++R +L+LS + +VLDEAD+ML +GF +DVE +L++ P
Sbjct: 123 LQALKRGVHVVVGTPGRVIDHLERGSLDLSGLATLVLDEADEMLRMGFIDDVETVLKKTP 182
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ +FSATMPP IR + YLK+P+ V++ + A+ Y + +++ ++
Sbjct: 183 ETRQVALFSATMPPAIRRIAQTYLKDPVEVNIAARTTTS-ANITQRYWFVSGLHKLDALT 241
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 RILEAEPFDG--MIIFVRTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGK 299
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 LDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRAGDAILFVTPREKS 359
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGD 479
+++IER T++ +VE D
Sbjct: 360 MLRAIERATRQPITEMQLPSVEDVND 385
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 221/363 (60%), Gaps = 8/363 (2%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
L RGIS LFPIQ+ E G D+IG+ RTG+GKTLA+ +PIL++I K + +
Sbjct: 39 VLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLK--QNK 96
Query: 173 NPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
NP LVL PTRELA QV EF+ +YGGT + +Q+ + G + VVGTP
Sbjct: 97 NPYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQIDQVRQGCEIVVGTP 156
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR-QSMMFSATMPP 288
GR+ DL++R L L E+Q VVLDEADQML+ GF E++E I+ + + Q ++FSAT+P
Sbjct: 157 GRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNERKIQMLLFSATIPD 216
Query: 289 WIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGK 346
W++ L++KY++ N ++L+ + + + + Y++ + + IG +++ + + +
Sbjct: 217 WVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHAR 276
Query: 347 CIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
I+F +TKR+ + + +PLHGDI Q QR T F++G+F L+AT+VAARG
Sbjct: 277 TIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARG 336
Query: 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
LD P VDLII P E+++HR+GRTGRAGK G I Y+ + ++ +ER +F
Sbjct: 337 LDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIERVERVAKIKF 396
Query: 467 TQL 469
++
Sbjct: 397 IKI 399
>gi|339486432|ref|YP_004700960.1| DEAD/DEAH box helicase [Pseudomonas putida S16]
gi|338837275|gb|AEJ12080.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida S16]
Length = 559
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 231/372 (62%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 ------DVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++ L
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIEQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEEFDA--LIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
++ATDVAARGLDVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQ 358
Query: 457 SIERDVGCRFTQ 468
IER G + +
Sbjct: 359 VIERVTGQKVAE 370
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 153/362 (42%), Positives = 224/362 (61%), Gaps = 10/362 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S +++ A+ G SK IQ+ + + G D+IG+A+TGTGKTLAFG +L KI
Sbjct: 7 NELGLSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
K P ++L+PTRELA Q+ +E CVYGG+ I Q+R +
Sbjct: 67 TPSQRKL-----PQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G+D +VGTPGRV+DL++RN L L++V+FVVLDEAD+ML++GF ED+E ILE++ +RQ+
Sbjct: 122 KGIDIIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I+ + Y+ + + S Q A + + ++ + +LI
Sbjct: 182 ILFSATMPAGIKKIAQNYMHDNFE-HVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLI- 239
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ A I+F +TKR D + M ++ YN E +HGD+SQ+ R TL F+ G N LI
Sbjct: 240 DVANVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLI 299
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV NV +I+YELP E++VHR GRTGRA K+G A I T ++ ++ I
Sbjct: 300 ATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQI 359
Query: 459 ER 460
ER
Sbjct: 360 ER 361
>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
Length = 702
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 157/382 (41%), Positives = 234/382 (61%), Gaps = 13/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D + D+ + +L++ DIV A+ + G PIQ A + M GRD++G A+TGTGKT
Sbjct: 54 DDNGDDTVGFDELELPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTA 113
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R P LVLAPTRELA QV F A L I V YGG
Sbjct: 114 AFALPILARIDR------SVRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGG 167
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML +GF EDVE
Sbjct: 168 QSYGVQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVER 227
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL P ++Q +FSATMP IR L+ +YL P + + S + AD I + S
Sbjct: 228 ILADTPDDKQVALFSATMPASIRRLSKQYLTEPEEITV--KSQTRTADNIRQRFLMVSHR 285
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + LA + A+ ++ ++GDI Q+ RERT+
Sbjct: 286 NKLDALTRIL-EVEEFEAMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTID 344
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G A+L
Sbjct: 345 QLKDGRLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFV 404
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 405 TPREGRLLRSIERATKSQLHEM 426
>gi|442771472|gb|AGC72158.1| ATP-dependent RNA helicase RhlE [uncultured bacterium A1Q1_fos_560]
Length = 449
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 232/390 (59%), Gaps = 17/390 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ + L + G + PIQ A + A++GRD++ +A+TG+GKTLAF IP++
Sbjct: 2 VSFAELSLTSFLADRLRQAGFTAPTPIQGAAIPLALEGRDLLAQAKTGSGKTLAFLIPLI 61
Query: 159 DKIIKFNEKH--------GRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGT 209
++ +K N K G R+P LVLAPTRELA Q+E E + AP S+ ++ VYGG
Sbjct: 62 ERAVKENWKPAGHGAAQAGSSRSPRALVLAPTRELALQIEMELRKYAPPSVTSLAVYGGV 121
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI RAL V+GTPGR++D+ L+L +++VV+DEADQML GF D++ I
Sbjct: 122 PIERHYRALRQPPLIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRI 181
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSM 327
L+ LP RQ+M+FSAT P I SL LKNP VD +S K+ Y + S
Sbjct: 182 LQLLPAQRQTMLFSATFSPEILSLAESMLKNPARTAVDPGVNSPTKITHA---YYVVPSE 238
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTL 386
+ +I L+ G + +VF K RLA + + + + G+ SQ+QRERTL
Sbjct: 239 ASRVQLIHTLLQSSEAGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTL 298
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+AFR GR L+ATDVAARGLDVP V +IHYELP ++VHRTGRTGRA + G+ +LI
Sbjct: 299 TAFRSGRLRSLVATDVAARGLDVPTVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLI 358
Query: 447 YTDQQARQVKSIER--DVGCRFTQLPRIAV 474
+ Q+ + ++ R + + LP +AV
Sbjct: 359 LSPQEEHEYLAMVRRLRIHTKRLALPTLAV 388
>gi|375292864|ref|YP_005127403.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
gi|371582535|gb|AEX46201.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
Length = 676
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
5219]
Length = 431
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 228/376 (60%), Gaps = 14/376 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L++S+DI A+ G + PIQ + M+G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESLTFKDLNLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
L+ + + + LVL PTRELA QV +E + A +T + VYGG PI Q
Sbjct: 62 ALEML------DVKSKKVQVLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQ 115
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV V+GTPGR++D ++R L L +V+ VVLDEAD+ML +GF ED+E IL R P
Sbjct: 116 IKALRRGVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAP 175
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSI 333
+Q+++FSATMP I LT KY +NP V V +KL I Y K +
Sbjct: 176 GKKQTVLFSATMPKPIIKLTKKYQQNPQMVKTVH---KKLTVPQIEQYYFEVKDNAKTEV 232
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + +VF TK++ D+ + A+ Y + +HGD+ Q+QRER +S FR G
Sbjct: 233 LCRLIDIY-NFKSSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKG 291
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
L+ATDVAARG+DV +++ + +Y++P E++VHR GRTGRAGK+G AI +
Sbjct: 292 EIETLVATDVAARGIDVESIEAVFNYDIPQDEESYVHRIGRTGRAGKEGVAITFAFGKDI 351
Query: 453 RQVKSIERDVGCRFTQ 468
R++K+I++ + +
Sbjct: 352 RKIKTIQKHTNVKIVR 367
>gi|452912129|ref|ZP_21960782.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
gi|452832711|gb|EME35539.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
Length = 655
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/371 (39%), Positives = 229/371 (61%), Gaps = 8/371 (2%)
Query: 81 QSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
++ +D V + + E + + +DI ALA GI FPIQ L A+ G+D+I
Sbjct: 50 EAIAEDSVEVEPQAPVETRTFADFGVREDIAEALAEAGIVHPFPIQSMTLPIALSGQDII 109
Query: 141 GRARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
G+A+TGTGKTL FGIP + ++ ++ + R P L++ PTRELA QV + +
Sbjct: 110 GQAKTGTGKTLGFGIPAVQNVVGRDDDGWDRLERPGAPQALIVVPTRELAVQVGSDLSIA 169
Query: 197 APSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
A + + + +YGG Q+ AL+ GV+ VVGTPGR+IDL +++ L+LS+V+ VVLDEA
Sbjct: 170 AKTRNARVLTIYGGRAYEPQIEALEKGVEVVVGTPGRLIDLNRQHHLDLSQVKTVVLDEA 229
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML +GF DVE +L +P+ +M+FSATMP + ++ +Y+ P+ + +
Sbjct: 230 DEMLDLGFLPDVEKLLSAVPRVPHTMLFSATMPGPVVAMARRYMSKPMHIRAAAPDEGST 289
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
I +KP ++G+++ +G +CI+F +TKR A ++A + + + PL
Sbjct: 290 KADIRQVVYRAHNLDKPEMLGRILQADGRG-RCIIFIRTKRTAAKVADELIERGFAAAPL 348
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HGD+ Q RE+ L AFR + +IL+ATDVAARG+DV +V +I+Y+ P +T++HRTGR
Sbjct: 349 HGDLGQGAREQALRAFRSSKVDILVATDVAARGIDVDDVTHVINYQCPEDEKTYLHRTGR 408
Query: 434 TGRAGKKGSAI 444
TGRAG+KG+AI
Sbjct: 409 TGRAGRKGTAI 419
>gi|376284519|ref|YP_005157729.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
gi|371578034|gb|AEX41702.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
Length = 680
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--SLGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|355670672|ref|ZP_09057419.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
gi|354816109|gb|EHF00698.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
Length = 569
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 229/379 (60%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAVILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G VVGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQVVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ NP+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIADIAKKFQDNPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L A+ + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MCRLLDMYAP-KLSIVFCNTKRQVDDLVQALQGRGYFAEGLHGDLKQIQRDRVMDSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R IL+ATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG++G A + ++
Sbjct: 293 RTEILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEV 352
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 353 YKLRDIQR--YCKTKIIPQ 369
>gi|409438235|ref|ZP_11265322.1| RNA helicase [Rhizobium mesoamericanum STM3625]
gi|408750101|emb|CCM76489.1| RNA helicase [Rhizobium mesoamericanum STM3625]
Length = 546
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 221/365 (60%), Gaps = 8/365 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI K PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIEKPTPIQEKAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K+I E+ R L+LAPTREL Q+ + L V GG I+ Q
Sbjct: 63 KLIP-EERRPDNRTTRTLILAPTRELVNQIAQNLKNFLRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDILVATPGRLLDLVARRAIGLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL NP+TV++ K AD + Y +K ++ +
Sbjct: 182 QTMLFSATMPKSIADLAGEYLTNPVTVEVTPPG--KAADKVEQYVHFVNGKNDKTDLLKK 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 240 SLTENPD-GRAIVFLRTKHGAEKLMKHLDHVGYSVASIHGNKSQGQRERALKAFRDGDIK 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI + R +
Sbjct: 299 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLL 358
Query: 456 KSIER 460
+ IER
Sbjct: 359 RDIER 363
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 156/364 (42%), Positives = 229/364 (62%), Gaps = 20/364 (5%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
++++S+D V AL G + IQK + MQG D+IG+A+TGTGKT AFGIPI+
Sbjct: 9 EIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIV---- 64
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY 220
EK + R P LVL PTRELA QV +E + + L + +YGG I Q++AL
Sbjct: 65 ---EKTTKDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKN 121
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQS 279
G ++GTPGR+ID IKR L LS++ +VLDEAD+ML +GF ED+E I++ + +N Q+
Sbjct: 122 GAQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYEKPSIIGQL 337
++FSATMP I +LT KY+KNP V + S ++L ++ Y A E
Sbjct: 182 LLFSATMPDPIMALTKKYMKNPKVVSI---SKEQLTVPLTDQFYCEAKDKLEALC----R 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I E K I+F +TK+ D L ++ + Y+ E LHGD++Q+QR++ + +FR+ +
Sbjct: 235 ILETEDMDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEV 294
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+ +V +I++++P E++VHR GRTGRAGK G AI T ++ RQ++
Sbjct: 295 LVATDVAARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLR 354
Query: 457 SIER 460
IE+
Sbjct: 355 LIEK 358
>gi|376248300|ref|YP_005140244.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|376251090|ref|YP_005137971.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|376256907|ref|YP_005144798.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
gi|372112594|gb|AEX78653.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|372114868|gb|AEX80926.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|372119424|gb|AEX83158.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
Length = 682
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
Length = 565
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 227/370 (61%), Gaps = 10/370 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + +QGRD+IG A+TGTGKT AFG+P+++
Sbjct: 24 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIE 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F +P L V GG I+ Q
Sbjct: 84 KLLA-DERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSP-LRINVVVGGVSINKQQL 141
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 142 QLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 201
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++
Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVAGKNDKTELLR 259
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G + IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 260 KSLTENPDG-RAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSI 318
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+
Sbjct: 319 KTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKL 378
Query: 455 VKSIERDVGC 464
++ IER +G
Sbjct: 379 LRDIERLMGI 388
>gi|419860593|ref|ZP_14383234.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982987|gb|EIK56486.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 667
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
Length = 537
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 175/424 (41%), Positives = 253/424 (59%), Gaps = 35/424 (8%)
Query: 61 EFHAISRPLDFKSSIAWQHAQSAVDDYVAYD---DSSKDEGLDISKLDISQ--------- 108
E AIS + S++A AQ AVD A D +S D+ ++S I+
Sbjct: 28 ETQAIS--TETTSAVASTAAQVAVD-LSALDCASSTSADDSAEVSTTVIAATPSGFASFG 84
Query: 109 ---DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+++ AL G + PIQKA + + GRD++G+A+TGTGKT AF +P+L +
Sbjct: 85 FAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAAL---- 140
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
G+ R P LVL PTRELA QV F A P L + +YGG+ Q+ L GV
Sbjct: 141 --DGQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKRGV 198
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DVE +LE+LP RQ ++F
Sbjct: 199 QIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVVLF 258
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG--ISLYSIATSMYEKPSIIGQLITE 340
SATMPP IR +++KYL +P V + K AD I I + +K + +++
Sbjct: 259 SATMPPEIRRISHKYLNDPAEVTI----KTKGADSSRIRQRFITVNGPQKLEALTRVLES 314
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K G I+F +TK +A A+ AK Y+ L+GD++QSQRERT+ ++G ++L+A
Sbjct: 315 ETKEG-VIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVA 373
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + L+++Y++P SE +VHR GRTGRAG+ G AIL T ++ R + +E
Sbjct: 374 TDVAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRERRFLGGLE 433
Query: 460 RDVG 463
R VG
Sbjct: 434 RAVG 437
>gi|38233613|ref|NP_939380.1| DEAD/DEAH box helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242613|ref|YP_005133465.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
gi|372105855|gb|AEX71917.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 680
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|376254085|ref|YP_005142544.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
gi|372117169|gb|AEX69639.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
Length = 705
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 572
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 230/379 (60%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G VVGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ +P+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIADIARKFQDDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L A+ + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MCRLLDMYAP-KLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +IL+ATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG++G A + ++
Sbjct: 293 RTDILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEV 352
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 353 YKLRDIQR--YCKTKIIPQ 369
>gi|345862983|ref|ZP_08815196.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125866|gb|EGW55733.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 606
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/376 (43%), Positives = 227/376 (60%), Gaps = 23/376 (6%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S D + L +S+ I+ ALA G PIQ+A + P ++G+D++G+A+TGTGKT AF
Sbjct: 2 STDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAF 61
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTP 210
+P+L +I + K P LVLAPTRELA QV + A + + +YGG P
Sbjct: 62 ALPLLSRI-DLSRK-----TPQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQP 115
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
HQ+R L GV VVGTPGRV+D I+R L L + +VLDEAD+ML +GF +DVE IL
Sbjct: 116 YDHQLRQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWIL 175
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
E+ PQ RQ +FSATMP IR + ++L +P + K+A S + Y +
Sbjct: 176 EQTPQTRQIALFSATMPSIIRKVAQRHLNDPTEI--------KIAAKTSTATTIRQRYWQ 227
Query: 331 PSIIGQL-----ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
S + +L I E +VF +TK LA + A+ Y E L+GDI Q QRER
Sbjct: 228 VSGLHKLDALTRILECESFDAMLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRER 287
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
T+ F+ GR +IL+ATDVAARGLDV + +I+Y++P +E++VHR GRTGRAG+ G AI
Sbjct: 288 TVERFKAGRLDILVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAGRTGDAI 347
Query: 445 LIYTDQQARQVKSIER 460
L + ++ R +++IER
Sbjct: 348 LFVSPKERRLLRTIER 363
>gi|376293035|ref|YP_005164709.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
gi|372110358|gb|AEX76418.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
Length = 682
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|376287519|ref|YP_005160085.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
gi|371584853|gb|AEX48518.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
Length = 680
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 237/382 (62%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS++ +G + L + I+ A+A+ G PIQ + MQG D++G A+TGTGKT
Sbjct: 62 DSAEKDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTA 119
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 120 AFALPILSRI------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE
Sbjct: 174 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVER 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+++Q +FSATMP IR L+ Y+K+P + + S + I+ + +
Sbjct: 234 ILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHR 291
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 292 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 350
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 351 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 410
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER + ++
Sbjct: 411 TPRERRMLRSIERATNAKLIEM 432
>gi|389850156|ref|YP_006352391.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 258]
gi|388247462|gb|AFK16453.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 258]
Length = 660
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|387138413|ref|YP_005694392.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|349734891|gb|AEQ06369.1| DEAD-box helicase [Corynebacterium pseudotuberculosis CIP 52.97]
Length = 829
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 560
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 230/372 (61%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 ------DVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+++FSAT+P IRS+ ++L+ P V + + + I + +K P+++ L
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI--QTKTQTVTAIEQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
++ATDVAARGLDVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQ 358
Query: 457 SIERDVGCRFTQ 468
IER G + +
Sbjct: 359 VIERVTGQKVAE 370
>gi|385807275|ref|YP_005843672.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 267]
gi|383804668|gb|AFH51747.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 267]
Length = 662
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 559
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 231/372 (62%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 ------DVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++ L
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIDQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
++ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQ 358
Query: 457 SIERDVGCRFTQ 468
IER G + +
Sbjct: 359 VIERVTGQKVAE 370
>gi|352516353|ref|YP_004885670.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
gi|348600460|dbj|BAK93506.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
Length = 505
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 228/374 (60%), Gaps = 12/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++SQ+++ A+ + G + PIQ + AM+G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELNLSQELLDAVTKIGFEEATPIQAETIPLAMEGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
DKI G+ + LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 61 DKI------DGKKKQIQGLVIAPTRELAIQTQEELFRLGKEKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L LS V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 QLKDNPQIVVGTPGRMLDHINRRTLKLSTVETLVLDEADEMLNMGFLEDIEKIIAQVPEQ 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+S+ K++K+ V + + + AD I Y + YEK I+ +
Sbjct: 175 RQTLLFSATMPKEIKSIGVKFMKDSHHVRI--KAKEMTADSIDQYYVKAKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L ++F +TKR D +A + A+ Y E +HGD+SQ +R L +F+ GR +
Sbjct: 233 LFDVQLP-ELTLIFARTKRRVDEIARGLEARGYKAEGIHGDLSQQKRMNILQSFKKGRLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + +
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGMSVTFVTPNEMNYL 351
Query: 456 KSIERDVGCRFTQL 469
IE R T +
Sbjct: 352 HVIENLTKKRMTPM 365
>gi|339503881|ref|YP_004691301.1| ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och 149]
gi|338757874|gb|AEI94338.1| putative ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och
149]
Length = 433
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 240/371 (64%), Gaps = 21/371 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D +++ ++VA L R G++ PIQK + AM GRD++G A+TGTGKT AFG+P++
Sbjct: 3 DFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62
Query: 160 KIIKFN----EKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
++++ + K RG LVLAPTRELA Q+ + F E+ + V GG I+
Sbjct: 63 QMLELDGRPAPKSVRG-----LVLAPTRELATQISVNLRSFAENT-KVKVAMVVGGQSIN 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q++ L+ GVD +V TPGR++DL+ R A+ L E F+VLDEADQML +GF D+ I
Sbjct: 117 NQIKRLERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASV 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYEK 330
+P+ RQ+M+FSATMP + L N YL++P+ V++ K AD ++ ++ IA S EK
Sbjct: 177 IPKERQTMLFSATMPKQMNELANSYLRSPIRVEV--SPPGKAADKVTQEVHFIAKS--EK 232
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
+++ +++ +H + + +VF +TK +++L ++ K+ Y +HG+ SQ QR+R ++AF
Sbjct: 233 SALLIEMLDKH-REERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAF 291
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
+ G +L+ATDVAARGLD+P+V + +Y+LPN E +VHR GRT RAGK G+AI
Sbjct: 292 KSGEIKVLVATDVAARGLDIPDVKHVYNYDLPNVPENYVHRIGRTARAGKDGAAIAFCAP 351
Query: 450 QQARQVKSIER 460
+ ++K+I++
Sbjct: 352 DEMGELKAIQK 362
>gi|392400358|ref|YP_006436958.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis Cp162]
gi|390531436|gb|AFM07165.1| DEAD-box helicase [Corynebacterium pseudotuberculosis Cp162]
Length = 660
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|386740147|ref|YP_006213327.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 31]
gi|384476841|gb|AFH90637.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 31]
Length = 660
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|383313989|ref|YP_005374844.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis P54B96]
gi|380869490|gb|AFF21964.1| DEAD-box helicase [Corynebacterium pseudotuberculosis P54B96]
Length = 638
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|387136343|ref|YP_005692323.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 42/02-A]
gi|348606788|gb|AEP70061.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 42/02-A]
Length = 659
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|384506502|ref|YP_005683171.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis C231]
gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
Length = 650
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288396|ref|YP_005122937.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 3/99-5]
gi|384504410|ref|YP_005681080.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1002]
gi|384508590|ref|YP_005685258.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis I19]
gi|384510681|ref|YP_005690259.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
gi|341824620|gb|AEK92141.1| DEAD-box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|371575685|gb|AEX39288.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 3/99-5]
Length = 660
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|379715095|ref|YP_005303432.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 316]
gi|387140417|ref|YP_005696395.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|355392208|gb|AER68873.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653801|gb|AFB72150.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 316]
Length = 660
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 246/412 (59%), Gaps = 15/412 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P L+LAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
T ++ R ++SIER ++ V+ + + S S+ D Q A
Sbjct: 410 TPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVA 461
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 228/365 (62%), Gaps = 14/365 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++ ++ A+ G + PIQ + A++GRD++G+A+TGTGKT AFG+P+L
Sbjct: 1 MKFEELNLDPRLLQAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI E + LV+APTRELA Q +E + + T+ VYGG I Q+
Sbjct: 61 EKIDHHTE------HIQALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIH 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+ G VVGTPGR+IDL+KR LNL+ ++ +VLDEAD+ML++GF ED+E I+ P N
Sbjct: 115 QIKKGAPVVVGTPGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + ++++P+TV + ++ + AD I Y EK ++ +
Sbjct: 175 RQTLLFSATMPKEIQRIGEHFMQDPVTVKI--EAKEMTADTIDQYFTKCHDREKFDLLTR 232
Query: 337 LI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I HAK IVF +TKR D ++ + + Y E +HGD+SQ +R + F+DGR
Sbjct: 233 FIDVSHAK--LAIVFARTKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
IL+ATDVAARGLD+ NV + +Y++P E++VHR GRTGRAGK G +I ++ +
Sbjct: 291 EILVATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEMGY 350
Query: 455 VKSIE 459
+++IE
Sbjct: 351 LRTIE 355
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 241/376 (64%), Gaps = 15/376 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L +++ +V AL ++ IQ + PA+ GRD+ G A+TGTGKT AF +P+L
Sbjct: 1 MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60
Query: 159 DKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISH 213
D++IK N + G RGR P LVL+PTRELA Q+ + + A +++ +YGG
Sbjct: 61 DRLIK-NPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHA-MQNSLTIYGGVSQVP 118
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++ L+ G D ++ TPGR+ DL+++ +NLSE++ VLDEAD+ML +GF D+ I+ +L
Sbjct: 119 QVKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKL 178
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI--SLYSIATSMYEKP 331
PQ +Q+++FSATMPP I+ L ++ L +P+ +++ + ++ ADGI SLY + T KP
Sbjct: 179 PQQKQTLLFSATMPPEIQKLASQLLHDPVEINI--EPERATADGITQSLYYVPTK--HKP 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
++ ++ + + + +VF +TK ++ A + K+ + +HG+ SQS R+RTL AF+
Sbjct: 235 ELLASVL-KREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFK 293
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+G +L+ATDVAARGLDV V +I+Y+LP ET+VHR GRTGRAGK G AI D+
Sbjct: 294 NGHIQVLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDE 353
Query: 451 QARQVKSIERDVGCRF 466
Q ++ ++R +G +
Sbjct: 354 QRGLLRDVQRILGKKI 369
>gi|26988598|ref|NP_744023.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase [Pseudomonas putida F1]
gi|386013264|ref|YP_005931541.1| DEAD/DEAH box helicase [Pseudomonas putida BIRD-1]
gi|395444724|ref|YP_006384977.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida ND6]
gi|397693274|ref|YP_006531154.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida DOT-T1E]
gi|421522357|ref|ZP_15968999.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
gi|388558721|gb|AFK67862.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida ND6]
gi|397330004|gb|AFO46363.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida DOT-T1E]
gi|402753976|gb|EJX14468.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 559
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 230/372 (61%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 ------DVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+++FSAT+P IRS+ ++L+ P V + + + I + +K P+++ L
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI--QTKTQTVTAIEQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
++ATDVAARGLDVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQ 358
Query: 457 SIERDVGCRFTQ 468
IER G + +
Sbjct: 359 VIERVTGQKVAE 370
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 233/371 (62%), Gaps = 12/371 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L++S ++ ++ R G + PIQ + +++G+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELNLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ N L++APTRELA QV +E ++ + + VYGG I+ Q+RA+
Sbjct: 65 ------DTKNTNVQGLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAMK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGR++D I R L L +V +VLDEAD+ML++GF +D+E IL+ +P+ RQ+
Sbjct: 119 KGPHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + ++ NP TV + S + I Y + EK I+ +L+
Sbjct: 179 LLFSATMPGPIRKIAENFMTNPETVKV--KSKEMTVSLIDQYFVKAQEREKFDILARLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D L+ A++ + Y E +HGD+SQ++R L F++GR +L+
Sbjct: 237 TQSP-ELAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK+G A+ T ++ ++ +
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIV 355
Query: 459 ERDVGCRFTQL 469
E+ R T +
Sbjct: 356 EQTTNKRMTPM 366
>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 675
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 158/406 (38%), Positives = 245/406 (60%), Gaps = 15/406 (3%)
Query: 68 PLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQK 127
P + + + ++++ D A +K EG + L + ++ A+ R G IQ
Sbjct: 41 PAEAPAETSAENSEPNQDGENAETSETKPEGF--NGLGLPAPVLDAIKRVGFESPSQIQA 98
Query: 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187
+ M+GRD++G A+TGTGKT AF +PIL +I R P L+LAPTRELA
Sbjct: 99 ETIPLLMEGRDVVGLAQTGTGKTAAFALPILARI------DTSARYPQALILAPTRELAL 152
Query: 188 QVEKEFHESAPSLDTICV---YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLS 244
QV F A L I V YGG Q+ L G +VGTPGRVID +++ +L++S
Sbjct: 153 QVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDIS 212
Query: 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
++F+VLDEAD+ML++GF EDVE ILE P+++Q +FSATMP IR +++ YL +P V
Sbjct: 213 NLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALFSATMPNAIRRISHDYLNDPEEV 272
Query: 305 DLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364
+ + + I+ + T+ K I +++ E + IVF +TK++ + +A +
Sbjct: 273 TVKAKT--RTNTNITQRYLFTAHRNKLDAITRVL-EVTEFDAMIVFVRTKQETEEIAEKL 329
Query: 365 -AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT 423
A+ ++ ++GDI+Q QRERT+ RDGR +IL+ATDVAARGLDV + +++Y++PN
Sbjct: 330 RARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVATDVAARGLDVERISHVLNYDIPND 389
Query: 424 SETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
+E++VHR GRTGRAG+ G A+L T ++ R ++SIE+ G + ++
Sbjct: 390 TESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSIEKVTGAKIEEM 435
>gi|383810152|ref|ZP_09965659.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
gi|383447091|gb|EID50081.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
Length = 536
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 226/362 (62%), Gaps = 9/362 (2%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D++++ + + + QDI ALA GI+ FPIQ L A+ G D+I +A+TGTGKT
Sbjct: 3 DNAAQQKTETFADYGVRQDISDALAAVGITTPFPIQTMALPVALAGHDIIAQAKTGTGKT 62
Query: 151 LAFGIPILDKIIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTIC 204
L FG+P + + +++ P L+L PTRELA QV ++ ++ +
Sbjct: 63 LGFGLPTIQSVTGRDDEGWDDLEFPGAPQALILVPTRELAIQVGEDLAIASKLRNARVAT 122
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG P Q++ L G++ VVGTPGR+IDL + ALNL +V+ VVLDEAD+ML +GF
Sbjct: 123 LYGGVPYEPQVKLLKKGLEVVVGTPGRLIDLYNQGALNLKQVKIVVLDEADEMLDLGFLP 182
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSI 323
VE IL LP RQSM+FSATMP + S+ +Y+ P+ + DQ K I
Sbjct: 183 SVEKILSYLPAQRQSMLFSATMPGPVISMARRYMNKPMRMSAADPEDQAKTKASIRQVVY 242
Query: 324 ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQR 382
+K ++G+++ + G+ ++FT+TKRDA R+A + A+ + PLHGD++Q R
Sbjct: 243 RVHHMDKDEMLGRILRAQGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAR 301
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
E+ L AFR+G+ +IL+ATDVAARG+DV +V +I++ +P +T++HRTGRTGRAG +G+
Sbjct: 302 EQALRAFRNGKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGT 361
Query: 443 AI 444
A+
Sbjct: 362 AV 363
>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 528
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 230/372 (61%), Gaps = 13/372 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L+I+ I+ A+ G PIQ A + ++GRD++G+A+TGTGKT AFGIP+L+K+
Sbjct: 8 ELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKM- 66
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALD 219
+ + P ++L PTRELA QV E + A + + +YGG I++Q+R+L
Sbjct: 67 -----DTKVKRPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G + +VGTPGR++D ++R+ L L +++ VVLDEAD+ML++GF ED+E IL+ +P+ RQ+
Sbjct: 122 TGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I +T KY K+ + +V + I Y +K ++ +L+
Sbjct: 182 LLFSATMPKAILDITKKYQKDSKLIKVV--RKELTVPNIEQYYYEVRPKQKVEVLCRLLD 239
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H+ IVF TKR D + + + Y E +HGD+ QSQR+R + +FR GR +IL+
Sbjct: 240 MHSP-KLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILV 298
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV +VD + +Y+LP E +VHR GRTGRAG+ G+A ++ +++ +
Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDV 358
Query: 459 ERDVGCRFTQLP 470
+R + P
Sbjct: 359 QRYCKTKIKARP 370
>gi|424871855|ref|ZP_18295517.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167556|gb|EJC67603.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 602
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 226/372 (60%), Gaps = 8/372 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 167
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 168 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 227
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 228 QTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVAGKNDKTELLRK 285
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 286 SLTENPDG-RAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 344
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+ +
Sbjct: 345 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 404
Query: 456 KSIERDVGCRFT 467
+ IER +G T
Sbjct: 405 RDIERLMGIDIT 416
>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 627
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 231/385 (60%), Gaps = 15/385 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E ++L +S+ + AL + G + P+Q A + + G D++G A+TGTGKT AFG+P
Sbjct: 3 ESPSFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLP 62
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISH 213
++D I R L+LAPTRELA QV A S+D + VYGG P+
Sbjct: 63 LIDSIDPAQ------RRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGV 116
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+RAL G VVGTPGRV+D IKR L L ++ VVLDEAD+ML +GF E++E ILE+
Sbjct: 117 QIRALRDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQT 176
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQ+ +FSATMP IR + +++++ P + +G ++ D Y + + K
Sbjct: 177 PAERQTTLFSATMPAPIRRIAHRHMREPQEIR-IGAGNEAGTDIDQSYCLVDQRH-KTEA 234
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+G++I A IVF +TK +A A+ A+ PL+GD+ Q +RER ++ RDG
Sbjct: 235 LGRMIEVEAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDG 294
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R ++++ATDVAARG+DVP + + +Y+ P +E +VHR GRTGRAG+KG AIL ++
Sbjct: 295 RLDVIVATDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKR 354
Query: 453 RQVKSIERDVG--CRFTQLP-RIAV 474
R ++ IER G R ++P R AV
Sbjct: 355 RMLRDIERLTGKPVREQKVPDRAAV 379
>gi|354614919|ref|ZP_09032743.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353220726|gb|EHB85140.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 576
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 231/390 (59%), Gaps = 12/390 (3%)
Query: 91 DDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
+ S E LD + L + + ALA G S+ PIQ+A + P + GRD++G+A TGTGK
Sbjct: 7 EQQSVTEHLDGFTDLALHPALSRALAELGYSEPTPIQRAAVPPLLAGRDLVGQAATGTGK 66
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYG 207
T AF +P+L + RG P LVL PTRELA QV F L + VYG
Sbjct: 67 TAAFALPLLHHLADGE----RGTTPRVLVLVPTRELAAQVCAAFDGYGRHLGVRVVPVYG 122
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G P+ Q+RAL+ G D VV TPGR +D + R +L L + VVLDEAD+ML +GFAED++
Sbjct: 123 GQPMGRQLRALEQGADVVVATPGRALDHLARGSLRLDGLDAVVLDEADEMLDMGFAEDID 182
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATS 326
IL+R P RQ+M+FSATMPP I L +YL +P ++L +S A I +
Sbjct: 183 AILQRTPDERQTMLFSATMPPRIAGLVRRYLTDPERIELSRAESVSGDAAMIRQTAYLVP 242
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
KP+ +G+++ A +VF +T+ + DRL M ++Y E LHG + Q QR+R
Sbjct: 243 RGYKPAALGRVLDLEAPKA-AVVFCRTREEVDRLTETMNGRNYRAEALHGGMDQQQRDRV 301
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
+ R G ++++ATDVAARGLD+ + +++Y++P+ + +VHR GR GRAG++GSA+
Sbjct: 302 VGRLRAGTADLVVATDVAARGLDIDQLTHVVNYDVPSAPDVYVHRIGRVGRAGREGSAVT 361
Query: 446 IYTDQQARQVKSIERDVGCRFT--QLPRIA 473
+ ++ R + +IER + +LP +A
Sbjct: 362 LAEPREQRMIATIERVTNQKMAVEKLPTVA 391
>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 528
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 223/363 (61%), Gaps = 19/363 (5%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS DI A+ G PIQ+ V+ ++G D+IG+A+TGTGKT AFGIP+L+K+
Sbjct: 9 ISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEKVTS-- 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVD 223
R L+L PTRELA QV E + + + +YGG I HQ++AL GV
Sbjct: 67 -----DRQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALKRGVQ 121
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D + R L L V ++LDEAD+ML +GF ED+E IL+++ NRQ+M+FS
Sbjct: 122 VVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTMLFS 181
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK---PSIIGQLITE 340
ATMPP IR L+NKY+ NP V + S+ + + EK S+ + +E
Sbjct: 182 ATMPPPIRKLSNKYMNNPKQVTISKGE----VTAPSINQVYFKVLEKNKLDSLCRVIDSE 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK+ L A+ A+ Y + LHGD++QSQR+ + FRD LIA
Sbjct: 238 TIDLG--IIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIA 295
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARG+DV NV +I+Y++P E++VHR GRTGRAG++G A+ + T ++ + ++SIE
Sbjct: 296 TDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIE 355
Query: 460 RDV 462
++
Sbjct: 356 AEI 358
>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 622
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 228/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 S-------QAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P+ RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NK+LK+ + + + D I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANKHLKDATNISIA--ASHTTVDSIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + ++G+ +IL
Sbjct: 241 VENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERATNSRISPM 370
>gi|25027815|ref|NP_737869.1| cold shock DEAD-box protein A [Corynebacterium efficiens YS-314]
gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
YS-314]
gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 736
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/385 (39%), Positives = 237/385 (61%), Gaps = 13/385 (3%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
+++ SS + L + Q ++ A+ + G PIQ + M G D++G A+TGTG
Sbjct: 95 SHESSSTEASTGFDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTG 154
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICV 205
KT AF +P+L +I K R+P LVLAPTRELA QV F A L + + +
Sbjct: 155 KTAAFALPVLSRIDK------SVRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPI 208
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG Q+ L G VVGTPGR+ID +++ +L++S ++F+VLDEAD+ML++GF ED
Sbjct: 209 YGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQED 268
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE IL P ++Q +FSATMP IR L+ +YL NP + + S+ + A I+ ++
Sbjct: 269 VERILADTPDDKQVALFSATMPNGIRRLSKQYLNNPQEISV--KSETRTATNITQRFLSV 326
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
+ K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRER
Sbjct: 327 AHRNKMDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRER 385
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
T+ +DGR +IL+ATDVAARGLDV + +++Y++PN +E++VHR GRTGRAG+ G AI
Sbjct: 386 TVDQLKDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAI 445
Query: 445 LIYTDQQARQVKSIERDVGCRFTQL 469
L T ++ R ++SIER ++
Sbjct: 446 LFVTPRERRMLRSIERATNAPLVEM 470
>gi|119715705|ref|YP_922670.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119536366|gb|ABL80983.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
Length = 479
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 228/384 (59%), Gaps = 10/384 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE-- 166
+I AL R I F IQ+ L A+ G D+IG+ARTGTGKTLAFGIP+L + + +
Sbjct: 4 EICDALERVNIVTPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVLQRSVAPKDPD 63
Query: 167 --KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGV 222
+ +G+ P L++APTRELA QV + + L + VYGG Q+ AL GV
Sbjct: 64 YAELPQGK-PQALIVAPTRELALQVSGDLALAGADRGLRVLTVYGGVGYEPQLDALQEGV 122
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR+IDL R AL++S V +VLDEAD+ML +GF DVE IL P+ RQ+M+F
Sbjct: 123 DIVVGTPGRLIDLANRRALDISHVHALVLDEADEMLDLGFLPDVERILAMTPETRQTMLF 182
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I +L ++++P+ + + + + +KP IIG+++ +
Sbjct: 183 SATMPAAIVALARTHMRHPMNIRAESSYENATVPATAQFIYQAHDLDKPEIIGRVL-QAE 241
Query: 343 KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
GK IVFT+TKR A R+A +A + ++ PLHGD++Q RE+ L+ FR+ + +L+ATD
Sbjct: 242 DAGKVIVFTRTKRQAQRVADDLAERGFSASPLHGDMAQVAREKALTKFREDKLRVLVATD 301
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461
VAARG+DV V +I+Y P +T+VHR GRTGRAG G AI + K I +
Sbjct: 302 VAARGIDVAGVSHVINYSCPEDDKTYVHRIGRTGRAGASGIAITFVDWADLARWKMINKA 361
Query: 462 VGCRFTQLPRIAVEGGGDMYNDMG 485
+ F + P+ +Y+D G
Sbjct: 362 LDLPFDE-PQETYSTSEHLYHDQG 384
>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
Length = 636
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|365869382|ref|ZP_09408929.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414582556|ref|ZP_11439696.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|420876743|ref|ZP_15340115.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|420881759|ref|ZP_15345123.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|420888066|ref|ZP_15351420.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|420893793|ref|ZP_15357135.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|420898622|ref|ZP_15361958.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|420903935|ref|ZP_15367256.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|420970934|ref|ZP_15434131.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|421048242|ref|ZP_15511238.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998839|gb|EHM20045.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392090420|gb|EIU16233.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|392090814|gb|EIU16625.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|392092626|gb|EIU18431.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|392102383|gb|EIU28170.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|392107863|gb|EIU33645.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|392109193|gb|EIU34971.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|392117708|gb|EIU43476.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|392171906|gb|EIU97579.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|392242407|gb|EIV67894.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898]
Length = 598
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 238/384 (61%), Gaps = 13/384 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ + + L I+ +++ A++ G IQ A + P + G D++G A+TGTGKT AF I
Sbjct: 20 DDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAI 79
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
PIL KI ++ LVLAPTRELA QV + F P L+ + +YGG
Sbjct: 80 PILSKI------DLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYV 133
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G VVGTPGRVID ++R L+LS + ++VLDEAD+ML++GFAEDVE IL
Sbjct: 134 VQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILAD 193
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ +Q +FSATMP IR LT KYL +P+ + + D+ A+ I+ I + K
Sbjct: 194 TPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMD 251
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +++ E IVF +TK+ + +A + A+ + ++GDI+QSQRERT++A +
Sbjct: 252 ALTRIL-EVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKA 310
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++
Sbjct: 311 GTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRE 370
Query: 452 ARQVKSIERDVGCRFTQLPRIAVE 475
+K+IE+ G + + P +VE
Sbjct: 371 RHLLKAIEKTTGAKLAEEPLPSVE 394
>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
gi|167652390|gb|EDR96519.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 466
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 230/372 (61%), Gaps = 13/372 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L+I+ I+ A+ G PIQ A + ++GRD++G+A+TGTGKT AFGIP+L+K+
Sbjct: 17 ELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKM- 75
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALD 219
+ + P ++L PTRELA QV E + A + + +YGG I++Q+R+L
Sbjct: 76 -----DTKVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLK 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G + +VGTPGR++D ++R+ L L +++ VVLDEAD+ML++GF ED+E IL+ +P+ RQ+
Sbjct: 131 TGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQT 190
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I +T KY K+ + +V + I Y +K ++ +L+
Sbjct: 191 LLFSATMPKAILDITKKYQKDSKLIKVV--RKELTVPNIEQYYYEVRPKQKVEVLCRLLD 248
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H+ IVF TKR D + + + Y E +HGD+ QSQR+R + +FR GR +IL+
Sbjct: 249 MHSP-KLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILV 307
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV +VD + +Y+LP E +VHR GRTGRAG+ G+A ++ +++ +
Sbjct: 308 ATDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDV 367
Query: 459 ERDVGCRFTQLP 470
+R + P
Sbjct: 368 QRYCKTKIKARP 379
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 218/363 (60%), Gaps = 8/363 (2%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
L RGI+ LFPIQ+ E G D+IG+ RTG+GKTLA+ +PIL++I K +
Sbjct: 39 VLESRGIANLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNK-- 96
Query: 173 NPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
NP LVL PTRELA QV EF+ +YGGT + +Q+ + G + VVGTP
Sbjct: 97 NPYVLVLLPTRELAIQVTTEFNSILHKENEYRIYSIYGGTDLRNQIDQVRQGCEIVVGTP 156
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR-QSMMFSATMPP 288
GR+ DL++R L L E+Q VVLDEADQML+ GF E++E I+ + Q ++FSAT+P
Sbjct: 157 GRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNDRKIQMLLFSATIPD 216
Query: 289 WIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGK 346
W++ L+ KY++ N ++L+ + + + + Y++ + + IG +++ + + +
Sbjct: 217 WVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCAKNQLTGAIGDVVSVYGGRHAR 276
Query: 347 CIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
I+F +TKR+ + + +PLHGDI Q QR T F++G+F L+AT+VAARG
Sbjct: 277 TIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARG 336
Query: 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
LD P VDLII P E+++HR+GRTGRAGK G I Y+ + ++ +ER +F
Sbjct: 337 LDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGICITFYSKKDMSLIERVERVAKIKF 396
Query: 467 TQL 469
++
Sbjct: 397 IKI 399
>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
Length = 657
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 225/366 (61%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L + ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL
Sbjct: 9 LLFADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPIL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
++ F + R P LVLAPTRELA QV + FH A P + VYGG P Q+
Sbjct: 69 SRL-DFAQ-----RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LSE++ +VLDEAD+ML +GF +DVE +L++LPQ
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQ 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ +FSATMP I+ + YL +P V ++ A+ Y + +++ ++
Sbjct: 183 SRQVALFSATMPAAIKRIAQTYLNDPAEV-IIASKTTTSANIRQRYWAVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK D LA + A+ ++GDI Q+QRER + +DG+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL + ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGM 359
Query: 455 VKSIER 460
+++IER
Sbjct: 360 LRAIER 365
>gi|337290483|ref|YP_004629504.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|384515395|ref|YP_005710487.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|397653720|ref|YP_006494403.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
gi|334696596|gb|AEG81393.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|334698789|gb|AEG83585.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|393402676|dbj|BAM27168.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
Length = 674
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/382 (40%), Positives = 236/382 (61%), Gaps = 15/382 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
DS ++G + L + I+ A+A+ G PIQ + M+G D++G A+TGTGKT
Sbjct: 61 DSDSNDGFE--ALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTA 118
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +PIL +I + + R+P LVLAPTRELA QV F A L I V YGG
Sbjct: 119 AFALPILSRI------NVKKRHPQALVLAPTRELALQVADSFQSFADHLGDIHVLPIYGG 172
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S + ++VLDEAD+MLS+GF ED+E
Sbjct: 173 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIER 232
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P ++Q +FSATMP IR L+ +Y+K+P + + S+ + I+ + +
Sbjct: 233 ILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHR 290
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E + I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+
Sbjct: 291 NKLDALTRIL-EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVD 349
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DGR +IL+ATDVAARGLDV + + +Y++PN +E++VHR GRTGRAG+ G AIL
Sbjct: 350 QLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFV 409
Query: 448 TDQQARQVKSIERDVGCRFTQL 469
T ++ R ++SIER ++
Sbjct: 410 TPRERRMLRSIERATNAELIEM 431
>gi|104780746|ref|YP_607244.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
entomophila L48]
Length = 562
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 232/372 (62%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L+++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 ------DVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++ L
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIDQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
++ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQ 358
Query: 457 SIERDVGCRFTQ 468
IER G + +
Sbjct: 359 VIERVTGQKVAE 370
>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
Length = 598
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 230/378 (60%), Gaps = 13/378 (3%)
Query: 79 HAQSAVDDYVAYDDSSK-DEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAM 134
H ++ + D + K DE LD + ++ IV AL +GI+ FPIQ L PA+
Sbjct: 46 HPEAPAQEEATPDITDKGDEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPAL 105
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVE 190
D+IG+A+TGTGKTL FGIP+L+ +I +E+ P L++ PTREL KQV
Sbjct: 106 DRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVA 165
Query: 191 KEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
++ ++A L T + +YGG Q+ AL G D VVGTPGR+IDL+++ L+LS V+
Sbjct: 166 QDLRDAAKYLSTRIVEIYGGVAFEPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVET 225
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
VVLDEAD+ML +GF DVE +L R+P+NR +M+FSATMP + +L +++ +P +
Sbjct: 226 VVLDEADEMLDLGFLPDVETLLGRVPENRHTMLFSATMPGPVVALARRFMVHPTHIRAQD 285
Query: 309 DSDQ-KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AK 366
DQ + + + K ++ +++ + G+ ++F +TKR A RL + A+
Sbjct: 286 PDDQNQTVNTVKQVIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTAR 344
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSET 426
+ LHGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV +V +I+Y+ P +
Sbjct: 345 GFAVGALHGDLGQGAREQALRAFRKGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKI 404
Query: 427 FVHRTGRTGRAGKKGSAI 444
++HR GRTGRAG G+A+
Sbjct: 405 YIHRIGRTGRAGNSGTAV 422
>gi|441503307|ref|ZP_20985314.1| Cold-shock DEAD-box protein A [Photobacterium sp. AK15]
gi|441429523|gb|ELR66978.1| Cold-shock DEAD-box protein A [Photobacterium sp. AK15]
Length = 625
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 231/377 (61%), Gaps = 15/377 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ I++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLADTILSALDTMGFVSPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KLDLGQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 121 ALKSGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L++P +D+ G+ ++ ++ + + + + +++
Sbjct: 181 AQRVLFSATMPPMVKEIVDRFLRDPARIDVAGE-NRTVSQVEQQFWVVKGVEKDEAMMRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 240 LETEGTDA--SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDV ARGLDVP + + +Y++P E+++HR GRTGRAG+ G AIL+ Q R +
Sbjct: 298 ILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRNGKAILLVRTNQIRML 357
Query: 456 KSIERDVGCRF--TQLP 470
++IER R QLP
Sbjct: 358 RTIERVTKSRMEEIQLP 374
>gi|346725640|ref|YP_004852309.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|346650387|gb|AEO43011.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 632
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 226/366 (61%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
K P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
ATCC 19977]
gi|419716620|ref|ZP_14244016.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|420863361|ref|ZP_15326754.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|420867758|ref|ZP_15331143.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|420872190|ref|ZP_15335570.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|420908973|ref|ZP_15372286.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|420915356|ref|ZP_15378661.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|420919746|ref|ZP_15383044.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|420926243|ref|ZP_15389528.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|420965711|ref|ZP_15428925.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
gi|420976589|ref|ZP_15439771.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|420981969|ref|ZP_15445139.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|420986517|ref|ZP_15449678.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|421006515|ref|ZP_15469630.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|421011836|ref|ZP_15474929.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|421016756|ref|ZP_15479823.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|421022668|ref|ZP_15485716.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|421028023|ref|ZP_15491060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|421033882|ref|ZP_15496904.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|421039073|ref|ZP_15502084.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|421042545|ref|ZP_15505550.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
helicase DEAD homolog) [Mycobacterium abscessus]
gi|382940906|gb|EIC65228.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|392073161|gb|EIT99001.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|392073881|gb|EIT99719.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|392076379|gb|EIU02212.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|392121347|gb|EIU47112.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|392123040|gb|EIU48802.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|392133751|gb|EIU59493.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|392138651|gb|EIU64384.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|392170848|gb|EIU96525.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|392173987|gb|EIU99653.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|392187934|gb|EIV13573.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|392202267|gb|EIV27864.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|392210240|gb|EIV35810.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|392215365|gb|EIV40913.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|392215856|gb|EIV41403.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|392227287|gb|EIV52801.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|392230423|gb|EIV55933.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|392231929|gb|EIV57433.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|392241611|gb|EIV67099.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|392257699|gb|EIV83148.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
Length = 598
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 238/384 (61%), Gaps = 13/384 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ + + L I+ +++ A++ G IQ A + P + G D++G A+TGTGKT AF I
Sbjct: 20 DDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAI 79
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
PIL KI ++ LVLAPTRELA QV + F P L+ + +YGG
Sbjct: 80 PILSKI------DLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYV 133
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G VVGTPGRVID ++R L+LS + ++VLDEAD+ML++GFAEDVE IL
Sbjct: 134 VQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILAD 193
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ +Q +FSATMP IR LT KYL +P+ + + D+ A+ I+ I + K
Sbjct: 194 TPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMD 251
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +++ E IVF +TK+ + +A + A+ + ++GDI+QSQRERT++A +
Sbjct: 252 ALTRIL-EVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKA 310
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++
Sbjct: 311 GTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRE 370
Query: 452 ARQVKSIERDVGCRFTQLPRIAVE 475
+K+IE+ G + + P +VE
Sbjct: 371 RHLLKAIEKTTGAKLAEEPLPSVE 394
>gi|399036700|ref|ZP_10733664.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398065527|gb|EJL57148.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 569
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 222/366 (60%), Gaps = 10/366 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEKAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K+I E+ R L+LAPTREL Q+ K F + L V GG I+ Q
Sbjct: 63 KLIP-EERRPDNRTTRTLILAPTRELVNQIATNLKNFLRKS-HLRINVVVGGVSINKQQL 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 121 QLEKGTDILVATPGRLLDLVNRRAIGLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL NP+TV++ K AD + Y +K ++
Sbjct: 181 RQTMLFSATMPKSIADLAGEYLTNPVTVEVTPPG--KAADKVEQYVHFVNGKNDKTDLLK 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 239 KSLTENPD-GRAIVFLRTKHGAEKLMKHLDHVGYSVASIHGNKSQGQRERALKAFRDGDI 297
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI + R
Sbjct: 298 KTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGVAIAFCAPDETRL 357
Query: 455 VKSIER 460
++ IER
Sbjct: 358 LRDIER 363
>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase [Rhizobium etli CFN 42]
gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
Length = 560
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 228/373 (61%), Gaps = 10/373 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 24 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F +P L V GG I+ Q
Sbjct: 84 KLLA-DERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSP-LRINVVVGGVSINKQQL 141
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 142 QLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 201
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++
Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVGGKNDKTELLR 259
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G + IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 260 KSLTENPDG-RAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSI 318
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+
Sbjct: 319 KTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKL 378
Query: 455 VKSIERDVGCRFT 467
++ IER +G T
Sbjct: 379 LRDIERLMGIDIT 391
>gi|380512805|ref|ZP_09856212.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 233/396 (58%), Gaps = 33/396 (8%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL ++ F + R
Sbjct: 3 AVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRL-DFAQ-----R 56
Query: 173 NPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + FH A P + VYGG P Q+ AL GV VVGTP
Sbjct: 57 KPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + R L+LSE++ +VLDEAD+ML +GF +DVE +L++LP++RQ +FSATMPP
Sbjct: 117 GRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPESRQVALFSATMPPA 176
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
I+ + YL +P V ++ A+ Y + +++ ++ I E I+
Sbjct: 177 IKRIAQTYLNDPAEV-IIASKTTTSANIRQRYWAVSGLHKLDALTR--ILEVEPFDAMII 233
Query: 350 FTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
F +TK D LA + A+ ++GDI Q+QRER + +DG+ ++L+ATDVAARGLD
Sbjct: 234 FARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDVLVATDVAARGLD 293
Query: 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV--GCRF 466
V + +++Y++P +E++VHR GRTGRAG+ G AIL + ++ +++IER
Sbjct: 294 VERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIERATRQPIEE 353
Query: 467 TQLPRI-----------------AVEGGG-DMYNDM 484
QLP + + GGG DMY D+
Sbjct: 354 MQLPSVDAVNDQRVSRFMEKISETIAGGGIDMYRDL 389
>gi|418419638|ref|ZP_12992821.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
gi|364001268|gb|EHM22464.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
Length = 598
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 238/384 (61%), Gaps = 13/384 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ + + L I+ +++ A++ G IQ A + P + G D++G A+TGTGKT AF I
Sbjct: 20 DDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAI 79
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
PIL KI ++ LVLAPTRELA QV + F P L+ + +YGG
Sbjct: 80 PILSKI------DLTSKDTQALVLAPTRELALQVSEAFGRYGAHMPKLNVLPIYGGQSYV 133
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G VVGTPGRVID ++R L+LS + ++VLDEAD+ML++GFAEDVE IL
Sbjct: 134 VQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILAD 193
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ +Q +FSATMP IR LT KYL +P+ + + D+ A+ I+ I + K
Sbjct: 194 TPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMD 251
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +++ E IVF +TK+ + +A + A+ + ++GDI+QSQRERT++A +
Sbjct: 252 ALTRIL-EVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKA 310
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++
Sbjct: 311 GTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRE 370
Query: 452 ARQVKSIERDVGCRFTQLPRIAVE 475
+K+IE+ G + + P +VE
Sbjct: 371 RHLLKAIEKTTGAKLAEEPLPSVE 394
>gi|418516368|ref|ZP_13082542.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418519674|ref|ZP_13085726.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410705118|gb|EKQ63597.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706907|gb|EKQ65363.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 632
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|340502033|gb|EGR28753.1| hypothetical protein IMG5_169500 [Ichthyophthirius multifiliis]
Length = 727
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 231/386 (59%), Gaps = 18/386 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
++ D+G ++ K ++ + L +R I+ LFPIQ+ + G+D+IG+ RTG+GKTL
Sbjct: 57 EAQHDKG-NMQKYIKNKKTIDLLNKRNITYLFPIQEHCFKAIQAGKDVIGKDRTGSGKTL 115
Query: 152 AFGIPILDKIIK--FNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVY 206
+ +P+++K+ + F R ++P L+L PTREL QV E S + +Y
Sbjct: 116 GYSLPLIEKLREDGFFGVIKRRQSPYVLILVPTRELCIQVANEISSLKHSDNEFRVLQIY 175
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GGT I Q L G + VGTPGR+ID R L LS ++ V+LDEADQML+ GF +D+
Sbjct: 176 GGTDIREQTNQLRDGCEIAVGTPGRIIDQFDRGNLILSNLKTVILDEADQMLNFGFQDDI 235
Query: 267 EVILERLPQNR--------QSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLAD 316
E I + + ++R Q+++FSAT+P W+ ++ KYL+ N + +DLV ++D K +
Sbjct: 236 EKIFKNIVESRESLGLPRTQNLLFSATVPSWVHEISRKYLQEQNIVMIDLVRNNDNKTSQ 295
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAKGG--KCIVFTQTKRDADRLAHAMAKSYNCEPLH 374
G++ +I Y++ IG +I + G + I+F +TK +A+ + + + LH
Sbjct: 296 GVTHLAINCPFYQRTEAIGDVILCYGGGAHSRVIIFCETKNEANEIMLKANIKQDLQVLH 355
Query: 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRT 434
GDI Q QRE T FR+G+F L+AT+VA+RGLD+P VDLI+ E P +T++HR GRT
Sbjct: 356 GDIPQKQREITFQGFREGKFKCLVATNVASRGLDIPEVDLIVQLEPPKELDTYIHRAGRT 415
Query: 435 GRAGKKGSAILIYTDQQARQVKSIER 460
GRAGK G I +T +Q ++ IE+
Sbjct: 416 GRAGKTGVCITFFTKKQVGLIERIEK 441
>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
Length = 569
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 230/379 (60%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFG+P
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + +VL PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G +VGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQVIVGTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ K+P+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L + + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MSRLLDMYAP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +IL+ATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG++G A + ++
Sbjct: 293 RTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEV 352
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 353 YKLRDIQR--YCKTKIIPQ 369
>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345893680|ref|ZP_08844473.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345045934|gb|EGW49832.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
Length = 593
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 157/371 (42%), Positives = 221/371 (59%), Gaps = 14/371 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQD++ A+ G + PIQ + + GRD +G+A+TGTGKT AFG+PIL+K+
Sbjct: 6 EELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILEKV 65
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRAL 218
I G+ LVL PTRELA QV +E + A + + VYGG I Q RAL
Sbjct: 66 IS-------GKGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRAL 118
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR+ID ++R L L EV VVLDEAD+ML +GF ED+E ILER P Q
Sbjct: 119 AKGAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQ 178
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++FSATMPP IR L+ ++L+ P + + A + Y + Y+K + +++
Sbjct: 179 RILFSATMPPPIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRP--YQKMDALCRVL 236
Query: 339 TEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
K +VF TKR D + H + Y + LHGD++Q+QR+R + FR IL
Sbjct: 237 DSQG-FRKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEIL 295
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DV +VD +I+Y++P+ E +VHR GRTGRAG+ GSA T ++ +++
Sbjct: 296 VATDVAARGIDVDDVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRD 355
Query: 458 IERDVGCRFTQ 468
I R R Q
Sbjct: 356 IIRCTKARIKQ 366
>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 632
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|390991391|ref|ZP_10261657.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372553884|emb|CCF68632.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 632
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
Length = 643
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|397678974|ref|YP_006520509.1| cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
gi|418249081|ref|ZP_12875403.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|419711589|ref|ZP_14239052.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|420930546|ref|ZP_15393822.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|420936028|ref|ZP_15399297.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|420940798|ref|ZP_15404060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|420946105|ref|ZP_15409358.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|420951063|ref|ZP_15414309.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|420955234|ref|ZP_15418473.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|420960958|ref|ZP_15424186.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|420991202|ref|ZP_15454354.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|420997038|ref|ZP_15460178.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|421001472|ref|ZP_15464602.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|353450736|gb|EHB99130.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|382938911|gb|EIC63240.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|392139564|gb|EIU65296.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|392141543|gb|EIU67268.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|392151585|gb|EIU77293.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|392159313|gb|EIU85009.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|392160840|gb|EIU86531.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|392189282|gb|EIV14916.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|392190213|gb|EIV15845.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|392200290|gb|EIV25896.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|392254023|gb|EIV79490.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|392255762|gb|EIV81223.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|395457239|gb|AFN62902.1| Cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
Length = 598
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 238/384 (61%), Gaps = 13/384 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ + + L I+ +++ A++ G IQ A + P + G D++G A+TGTGKT AF I
Sbjct: 20 DDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAI 79
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
PIL KI ++ LVLAPTRELA QV + F P L+ + +YGG
Sbjct: 80 PILSKI------DLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYV 133
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G VVGTPGRVID ++R L+LS + ++VLDEAD+ML++GFAEDVE IL
Sbjct: 134 VQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILAD 193
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ +Q +FSATMP IR LT KYL +P+ + + D+ A+ I+ I + K
Sbjct: 194 TPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMD 251
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +++ E IVF +TK+ + +A + A+ + ++GDI+QSQRERT++A +
Sbjct: 252 ALTRIL-EVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKA 310
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++
Sbjct: 311 GTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRE 370
Query: 452 ARQVKSIERDVGCRFTQLPRIAVE 475
+K+IE+ G + + P +VE
Sbjct: 371 RHLLKAIEKTTGAKLAEEPLPSVE 394
>gi|407984605|ref|ZP_11165216.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
gi|407373827|gb|EKF22832.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
Length = 560
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/380 (42%), Positives = 231/380 (60%), Gaps = 15/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L I ++ A+ G IQ A + P M G D++G A+TGTGKT AF IPIL
Sbjct: 13 LTFADLQIPPAVLRAVEDVGYETPSAIQAATIPPLMAGSDVVGLAQTGTGKTAAFAIPIL 72
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
KI R LVLAPTRELA QV + F P ++ + VYGG + Q+
Sbjct: 73 SKI------DTASRTTQALVLAPTRELALQVAEAFGRYGAHLPEVNVLPVYGGASYTPQL 126
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L G VVGTPGRVID ++R +L+LS + ++VLDEAD+ML +GFAEDVE IL P+
Sbjct: 127 AGLRRGAHIVVGTPGRVIDHLERGSLDLSRIDYLVLDEADEMLQMGFAEDVERILAETPE 186
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+Q +FSATMPP IR +T KYL +P+ V + + A+ IS I + K +
Sbjct: 187 YKQVALFSATMPPAIRKITRKYLHDPVEVTV--KAKTATAENISQRYIEVAGPRKLDALT 244
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ E IVF +TK+ + LA + A+ + ++GDI+Q+QRERT++A + G
Sbjct: 245 RVL-EVEPFEAMIVFVRTKQATEELAERLRARGFAAAAINGDIAQAQRERTIAALKSGAI 303
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+ILIATDVAARGLDV + +++Y++PN +E++VHR GRTGRAG+ G+A+L T ++
Sbjct: 304 DILIATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRSGTALLFVTPRERHL 363
Query: 455 VKSIERDVGCRFT--QLPRI 472
+K+IE+ + +LP +
Sbjct: 364 LKAIEKATRSKLVAAELPTV 383
>gi|335419959|ref|ZP_08551002.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
gi|334895605|gb|EGM33773.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
Length = 609
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 223/366 (60%), Gaps = 15/366 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L +S ++AALA G PIQ A + P + G+D++G+A+TGTGKT AF +PIL +
Sbjct: 15 SDLALSDAVMAALADVGYETPSPIQAATIPPLLDGKDVLGQAQTGTGKTAAFALPILSGL 74
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
++ G+ P LVL PTREL QV + F A P + +YGG Q+ AL
Sbjct: 75 ---PDRGKGGKGPQALVLTPTRELTIQVAEAFQRYASHIPGFHVLPIYGGQGYGPQLAAL 131
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV+ VVGTPGRV+D +KR L L + ++VLDEAD+ML +GF EDVE I E P RQ
Sbjct: 132 KRGVNVVVGTPGRVMDHLKRGTLKLDALDWMVLDEADEMLRMGFIEDVEWIFEHTPPQRQ 191
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSIIG 335
+FSATMP IR + +L+ P + + K I++ Y I K +
Sbjct: 192 VALFSATMPSAIRRIAKTHLREPQEITI----QTKTTTAINIRQRYWIVGGGTSKLDALT 247
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E IVF +TK+ D LA + A+ Y C L+GDI Q+QRERT++ ++G+
Sbjct: 248 RLL-EAEPFDAMIVFARTKKSTDELAERLSARGYACAALNGDIVQAQRERTVAKLKNGQL 306
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+I++ATDVAARGLDV + +I++++P+ +E +VHR GRTGRAG++G AIL T ++ R
Sbjct: 307 DIIVATDVAARGLDVERISHVINFDIPHDTEAYVHRIGRTGRAGREGDAILFVTMREKRL 366
Query: 455 VKSIER 460
K+IER
Sbjct: 367 FKAIER 372
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 228/361 (63%), Gaps = 12/361 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L + ++++ A+ G PIQ+ ++ AMQG D+IG+A+TGTGKT AFGIP+L KI
Sbjct: 5 NELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
K N + L+LAPTRELA QV +E + A +++ I +YGG I Q+R L
Sbjct: 65 EKGN------KAVQALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
VV TPGR +D ++RN +NL+ +Q V+LDEAD+MLS+GF ED+E IL+ +P RQ+
Sbjct: 119 KNPQIVVATPGRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I+S++ K++K+P TV + + D I + +K + +L+
Sbjct: 179 LLFSATMPKRIQSVSQKFMKSPQTVAVKNKT--MTVDTIEQRYLDLKERDKFDALCRLMD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H I+F +TKR D L+ A++ + Y+ E +HGD+ Q +RE+ L F+ G IL+
Sbjct: 237 IHC-PELSIIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + +++LP E++VHR GRTGRAG+KG + T ++ ++ I
Sbjct: 296 ATDVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPREREYLELI 355
Query: 459 E 459
E
Sbjct: 356 E 356
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 228/382 (59%), Gaps = 19/382 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ +QG D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNP---LCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
+ I G N CLVL PTRELA QV E + + VYGG I
Sbjct: 61 NNI---------GSNEGKVFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDR 111
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++A+ GVD ++GTPGRV+DLIKR+ L L++V+++VLDEAD+ML +GF +D++ I+
Sbjct: 112 QIKAIKRGVDIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHT 171
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+ RQ+MMFSATMP I++L KY+K+ + ++ Y + S+
Sbjct: 172 NKERQTMMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESL 231
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
L E I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G
Sbjct: 232 CRILDVEEP--SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEG 289
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ L+ATDVAARG+D+ N+ +I+Y LP E++VHR GRTGRA + G A + T ++
Sbjct: 290 NLDFLVATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREY 349
Query: 453 RQVKSIERDVGCRF--TQLPRI 472
+K IER+ C+ +LP I
Sbjct: 350 PALKRIERETKCKIRRKELPTI 371
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/399 (40%), Positives = 235/399 (58%), Gaps = 30/399 (7%)
Query: 83 AVDDYVAYDDSSKDEGLDISK-----------------LDISQDIVAALARRGISKLFPI 125
+V D V DDS D+++ L + I+AA+ + G PI
Sbjct: 36 SVGDIVGADDSENTADRDVTEENPADNNDTETESGFAGLGLPDRILAAVEKVGYVTPSPI 95
Query: 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185
Q A + M G D++G A+TGTGKT AF +P L ++ E+H P LVLAPTREL
Sbjct: 96 QAATIPALMDGHDVVGLAQTGTGKTAAFALPALSRL-DTTERH-----PQVLVLAPTREL 149
Query: 186 AKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
A Q F A + + +YGG P Q+ L G +VGTPGR+ID +++ +L+
Sbjct: 150 ALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRRGAQVIVGTPGRIIDHLEKGSLD 209
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
LS ++F+VLDEAD+ML++GF EDVE IL P +RQ +FSATMP IR L+ +YL +P
Sbjct: 210 LSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVALFSATMPSAIRRLSKQYLNDPQ 269
Query: 303 TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
+ S+Q+ D I+ + S K + +++ E + I+F +TK D + LA
Sbjct: 270 EYTV--KSEQRTGDNITQDYLMVSHRNKLDALTRIL-EVTEFDAMIIFVRTKSDTEELAD 326
Query: 363 AM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421
+ A+ + ++GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV + + +Y++P
Sbjct: 327 KLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIP 386
Query: 422 NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
+E++VHR GRTGRAG+ G AIL T ++ R +K+IER
Sbjct: 387 RDTESYVHRIGRTGRAGRTGRAILFVTPRERRLLKNIER 425
>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 622
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 227/372 (61%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 S-------QAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P+ RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NK+LK+ + + + D I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANKHLKDATNISIA--ASHTTVDSIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERATNSRISPM 370
>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
Length = 537
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 226/366 (61%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
K P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 634
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 229/373 (61%), Gaps = 17/373 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
+L +S+ ++ +L G PIQ A ++P M G+D+IG+A+TGTGKT AF +P+L+KI
Sbjct: 9 ELGLSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKID 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+K N P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 69 MKINA-------PQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNAL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E +LE P + Q
Sbjct: 122 KRGPQVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+FSATMP I+ + K+L NP+ + + S Q + I + S + K +++ L
Sbjct: 182 LALFSATMPEQIKRVAAKHLSNPVNISIA--SSQTTVESIDQRYVQVSQHNKLEALVRVL 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +I
Sbjct: 240 EVENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDI 297
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + +++Y++P SE +VHR GRTGRAG+ G AIL T+++ R ++
Sbjct: 298 LIATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLR 357
Query: 457 SIERDVGCRFTQL 469
+IER R + +
Sbjct: 358 TIERATNSRISPM 370
>gi|408824960|ref|ZP_11209850.1| DEAD/DEAH box helicase [Pseudomonas geniculata N1]
Length = 648
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 234/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 359
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 360 LRQIERATRQPIEEMQLPSVEAVND 384
>gi|402488920|ref|ZP_10835725.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
gi|401812104|gb|EJT04461.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
Length = 553
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 8/372 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + L V GG I+ Q
Sbjct: 63 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A++L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDILVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L YL +P+ V++ K AD + Y +K ++ +
Sbjct: 182 QTMLFSATMPKAIADLAGDYLVDPVKVEVTPPG--KAADKVEQYVHFVAGKNDKTELLRK 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 240 SLTENPDG-RAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+ +
Sbjct: 299 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 358
Query: 456 KSIERDVGCRFT 467
+ IER +G T
Sbjct: 359 RDIERLMGIDIT 370
>gi|383807106|ref|ZP_09962667.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
gi|383299536|gb|EIC92150.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
Length = 439
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 217/353 (61%), Gaps = 17/353 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L I DI AL +GI+ FPIQ+ + A+ G D+IG+A+TGTGKTL FG+P++
Sbjct: 1 MSFKSLGIDADICEALESKGITSPFPIQEQAIPVALSGTDVIGQAKTGTGKTLGFGLPLI 60
Query: 159 DKIIKFNEKHGRGRNPL----CLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPIS 212
+ G NP LV+ PTRELA QV ++ + + T + +YGG
Sbjct: 61 QAL---------GENPAPGVQALVVVPTRELALQVSEDLILATTNRPTTVVAIYGGKAYE 111
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL+ G VVGTPGR++DL K+ +NLS V F+VLDEAD+ML +GF DVE +
Sbjct: 112 GQVAALEGGAQIVVGTPGRLLDLAKQKLMNLSNVTFMVLDEADEMLDLGFLPDVEKLFSL 171
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P RQ+M+FSATMP I SL +Y P+ + + + K I Y +K
Sbjct: 172 TPPQRQTMLFSATMPAAILSLARRYQNRPIHIRVSDPDEGKTKADIKQYVYRAHALDKDE 231
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++G+++ +G K I+F +TKR + +LA + + +N PLHGD+SQ RER++++FR+
Sbjct: 232 VVGRILQAEGRG-KTIIFVRTKRQSAKLAEELIDRGFNAAPLHGDMSQDARERSMASFRE 290
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
G+ IL+AT+VAARG+DV +V +I+Y +P + ++HRTGRTGRAGK G A+
Sbjct: 291 GKKEILVATEVAARGIDVDDVTHVINYSVPEDEKAYLHRTGRTGRAGKLGVAV 343
>gi|402573181|ref|YP_006622524.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254378|gb|AFQ44653.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 537
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 235/381 (61%), Gaps = 25/381 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ ++ AL+ G + PIQK + A+ G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 12 IQLSKPLLQALSEMGFEEPSPIQKEAIPVALDGVDLIGQAQTGTGKTAAFGIPITEKV-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+ + + L++ PTRELA QV +E + + + +YGG PI Q+RAL G
Sbjct: 70 ----NAKFQAVQALIVTPTRELAIQVSEEIAKLGKYKHVKPLPIYGGQPIDRQIRALRMG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSM 280
VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E +L +P + +Q +
Sbjct: 126 YQVVVGTPGRLLDHLNRGTLRLQHVKMVVLDEADEMLDMGFIDDIESLLREVPAEGKQVL 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSIIG 335
+FSATMPP IR L Y+ +P +V + D +++ I YE K +G
Sbjct: 186 LFSATMPPGIRKLAQTYMNSPRSVTVSRDE-------LTVPLIDQVFYETRESIKVDALG 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 239 RII-DMEDIGQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKT 297
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+LIATDVAARGLD+ NV +I++++P ++VHR GRTGR G+KG AI + + ++ RQ
Sbjct: 298 ELLIATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRIGRKGQAITLISPKEYRQ 357
Query: 455 VKSIERDVGCRF--TQLPRIA 473
++ IE + R +LP +A
Sbjct: 358 LRLIENLIKTRIKRQELPSLA 378
>gi|357589095|ref|ZP_09127761.1| hypothetical protein CnurS_02800 [Corynebacterium nuruki S6-4]
Length = 686
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 232/376 (61%), Gaps = 13/376 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +I+ A+A+ G + PIQ A + M+G D++G A+TGTGKT AF +P L ++
Sbjct: 47 LGLPAEILDAVAKVGYTTPSPIQAATIPALMEGHDVVGLAQTGTGKTAAFALPALSRL-D 105
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDY 220
+++H P LVLAPTRELA Q F A L + + +YGG P Q+ L
Sbjct: 106 LHDRH-----PQVLVLAPTRELALQSADSFESFAGHLGNVNILPIYGGAPYGAQLSGLRR 160
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR+ID +++ +L+LS ++F+VLDEAD+ML++GF EDVE IL P+ RQ
Sbjct: 161 GAHVVVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILSETPEERQVA 220
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L+ +YL + + S+Q+ AD I+ + + K + + +++ E
Sbjct: 221 LFSATMPSAIRRLSKQYLND--AQEYTVKSEQRTADNITQDYLFVTFRNKMNALTRIL-E 277
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK D + +A + A+ + ++GDI+Q+QRERT+ +DG +IL+A
Sbjct: 278 VTDFDAMILFVRTKSDTEDVAEKLRAQGFKAAAINGDIAQNQRERTVDQLKDGTLDILVA 337
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + + +Y++P +E++VHR GRTGRAG+ G AIL T ++ R +K+IE
Sbjct: 338 TDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRHGRAILFVTPREKRMLKNIE 397
Query: 460 RDVGCRFTQLPRIAVE 475
R ++ VE
Sbjct: 398 RATKSHINEIDLPGVE 413
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 231/385 (60%), Gaps = 25/385 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L LDIS +I A+A G + PIQ + + GRD+IG+A+TGTGKT AFGIPIL
Sbjct: 4 LRFKDLDISSEIENAVADMGFEEATPIQSLAIPHVLDGRDVIGQAQTGTGKTAAFGIPIL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQM 215
+ + R+ ++L PTRELA QV +E + + + I V YGG PI Q+
Sbjct: 64 EMV------DPGDRSLQAVILCPTRELAIQVAEEIRKLSKYMSKIKVLPIYGGQPIERQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV ++GTPGRV+D ++R L + V+ +VLDEAD+ML +GF +D+E++L +P
Sbjct: 118 KALKKGVQVIIGTPGRVMDHMRRGTLKMDSVKIMVLDEADEMLDMGFRDDIEIVLRDMPS 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----K 330
RQ+++FSATM I +LT KY NP + +V +++ I +E K
Sbjct: 178 ERQTLLFSATMSRDILNLTRKYQNNPEFLKVVHQE-------LTVPEIQQIYFEVKEKMK 230
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAF 389
++ +L+ H +VF TKR D+L H + Y + LHGD++QSQR+R ++ F
Sbjct: 231 LELLSRLLDIH-NFKLSLVFCNTKRRVDKLVTHLQIRGYAADGLHGDMTQSQRDRVMAKF 289
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R+G+ +L+ATDVAARG+DV NV+ + +Y++PN E +VHR GRTGRAGK G A +
Sbjct: 290 RNGKIEVLVATDVAARGIDVENVEAVFNYDVPNDDEYYVHRIGRTGRAGKTGMAFTFVSG 349
Query: 450 QQARQVKSIERDVGCRFT--QLPRI 472
++ Q++ I++ + Q+P I
Sbjct: 350 KEIYQLRDIQKYTKTKIEQHQIPSI 374
>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 580
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 226/372 (60%), Gaps = 8/372 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ I+A L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 24 NFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 84 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 142
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 143 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 202
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 203 QTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVAGKNDKTELLRK 260
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 261 SLTENPDG-RAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+ +
Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 379
Query: 456 KSIERDVGCRFT 467
+ IER +G T
Sbjct: 380 RDIERLMGIDIT 391
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 232/374 (62%), Gaps = 12/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ A+ R G + PIQ + A+ GRD+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + H +G LV++PTRELA Q ++E + + + VYGG I Q+R
Sbjct: 61 EKI-DTSSSHLQG-----LVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPST 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+S+ K+++NP V + + + AD I Y + + +EK I+ +
Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMQNPEHVKI--KAKEMTADLIDQYYVRSKDFEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ I+F +TKR D LA + + Y E +HGD+SQ +R L +F++G +
Sbjct: 233 LLDVQTP-ELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + +
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYL 351
Query: 456 KSIERDVGCRFTQL 469
+IE R T L
Sbjct: 352 HTIENLTKKRMTPL 365
>gi|456733812|gb|EMF58634.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia EPM1]
Length = 648
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 234/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 359
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 360 LRQIERATRQPIEEMQLPSVEAVND 384
>gi|344206631|ref|YP_004791772.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343777993|gb|AEM50546.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 648
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 234/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 359
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 360 LRQIERATRQPIEEMQLPSVEAVND 384
>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 528
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 228/367 (62%), Gaps = 22/367 (5%)
Query: 94 SKDEGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
SK+E D + D I+ +I AL+ +GI+ FPIQ L A+ GRD+IG+A+TGTGKTL
Sbjct: 35 SKNELADKTFADFGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTL 94
Query: 152 AFGIPILDKI-----IKF-NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTI 203
FG+P L K+ K+ E H +G +P +V+ PTREL KQV + +A S+
Sbjct: 95 GFGLPTLMKVHGPASAKYATEVHYQG-HPQAMVIVPTRELCKQVAADLRAAAKQTSVRIT 153
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
+YGG Q+ AL G D +VGTPGR+IDL+KR L L V VVLDEAD+ML +GF
Sbjct: 154 EIYGGAAFEPQIDALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFL 213
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
DVE++L R+PQ RQ+M+FSATMP I +L +Y+K P + DQ G ++ ++
Sbjct: 214 PDVEILLSRVPQTRQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQ----GATVKTV 269
Query: 324 ATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDI 377
+Y K ++ +++ + G ++FT+TKR A L+ + A+ + LHGD+
Sbjct: 270 KQVIYRCHALNKIEVVARILQARER-GLAVIFTKTKRTAATLSEDLSARGFAVASLHGDL 328
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437
Q RE+ + AFR G+ ++L+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRA
Sbjct: 329 GQGAREQAMRAFRSGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRA 388
Query: 438 GKKGSAI 444
G G+A+
Sbjct: 389 GASGTAV 395
>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
Length = 648
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 234/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 359
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 360 LRQIERATRQPIEEMQLPSVEAVND 384
>gi|424667727|ref|ZP_18104752.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
gi|401067989|gb|EJP76513.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
Length = 648
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 234/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 359
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 360 LRQIERATRQPIEEMQLPSVEAVND 384
>gi|393199138|ref|YP_006460980.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|406666247|ref|ZP_11074015.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|405385786|gb|EKB45217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 517
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 232/373 (62%), Gaps = 12/373 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + AM GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI + N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KI------DPKNPNIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ D I R L L EVQ +VLDEAD+ML++GF +D+ ILE +P +R
Sbjct: 117 LKNKPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDR 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++K+P V + + + + I + + + EK + +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMKDPEIVKI--KAKELTMENIEQFFVKATEREKFDALSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + K I+F +TKR D L+ A+ + + E +HGD+SQ++R L F++G+ +I
Sbjct: 235 L-DSQKPELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDI 293
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ ++
Sbjct: 294 LIATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLR 353
Query: 457 SIERDVGCRFTQL 469
+E R T L
Sbjct: 354 IVEETTKKRMTPL 366
>gi|357055243|ref|ZP_09116317.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
gi|355383199|gb|EHG30285.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
Length = 569
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 230/379 (60%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFG+P
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISH 213
+L K+ + + +VL PTRELA QV +E F + + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G +VGTPGRV+D ++R + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGAQVIVGTPGRVMDHMRRKTIKADHVLTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ K+P+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L + + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MSRLLDMYAP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +IL+ATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG++G A + ++
Sbjct: 293 RTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEV 352
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 353 YKLRDIQR--YCKTKIIPQ 369
>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 648
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 25 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 84
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 85 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 138
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 139 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 198
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 199 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 257
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 258 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 315
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 316 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 375
Query: 455 VKSIER 460
++SIER
Sbjct: 376 LRSIER 381
>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
Length = 603
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 231/381 (60%), Gaps = 12/381 (3%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+ E + + L +SQ + AL G PIQ + + GRD+IG+A+TGTGKT AF
Sbjct: 7 EQKESVRFADLSLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAF 66
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTP 210
+P+L ++ NE P ++LAPTRELA QV + + L+ +YGGT
Sbjct: 67 ALPLLS-MLDPNED-----GPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTD 120
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
+ Q RALD VVGTPGR++D I+R +L+LS + VVLDEAD+ML +GF EDVE IL
Sbjct: 121 FTRQFRALDRKPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWIL 180
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
E P RQ+ +FSATMPP I ++ K LK P+TV + ++ ++ + M K
Sbjct: 181 EHTPSERQTALFSATMPPRIAAIAKKQLKEPVTV-AIKNTTATVSTVRQRFIKCNGMRHK 239
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
++G L+ E + IVFT+TK A +A +A S + E +HGDI+Q++RE+ +S
Sbjct: 240 IEVLGNLL-ETEERDAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLL 298
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
++G+ +IL+ATDVAARGLDV + + ++++P+ +E ++HR GR GRAG+ G AIL+ T
Sbjct: 299 KEGKIDILVATDVAARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAGRSGEAILLLTR 358
Query: 450 QQARQVKSIERDVGCRFTQLP 470
+ R+++ IE + +P
Sbjct: 359 RDFRKLRDIEDATRQQMQPMP 379
>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 646
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 155/385 (40%), Positives = 233/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P LVLAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 KRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 359
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 360 LRQIERATRQPIEEMQLPSVEAVND 384
>gi|399520276|ref|ZP_10761052.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111717|emb|CCH37611.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 560
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 232/375 (61%), Gaps = 15/375 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G+DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGQDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L+ + VYGG P+ Q++A+
Sbjct: 69 ------DPTKREPQALILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P V + + + I + +K + + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHVKIAAKT--QTVSRIEQAHLMIHADQKTNAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK + L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLAAALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRF--TQLP 470
IER G + +LP
Sbjct: 360 IERVTGQKVGEVKLP 374
>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 648
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 25 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 84
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 85 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 138
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 139 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 198
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 199 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 257
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 258 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 315
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 316 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 375
Query: 455 VKSIER 460
++SIER
Sbjct: 376 LRSIER 381
>gi|190573462|ref|YP_001971307.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia K279a]
gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
Length = 654
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 234/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 242 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 359
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 360 LRQIERATRQPIEEMQLPSVEAVND 384
>gi|396583527|ref|ZP_10484060.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395549007|gb|EJG16160.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 615
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/347 (42%), Positives = 219/347 (63%), Gaps = 9/347 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+ +I +
Sbjct: 78 VTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPD 137
Query: 166 EKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E+ P L++ PTREL KQV ++ E+A L T + +YGG Q+ AL
Sbjct: 138 EEGYEDLLNPNQPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQIEALQ 197
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P+NR +
Sbjct: 198 RGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVPENRHT 257
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + +L +++ +P + DQ + + + K +I +++
Sbjct: 258 MLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEVISRIL 317
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ ++F +TKR A RL + A+ + LHGD+ Q RE+ L AFR+G+ ++L
Sbjct: 318 QAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRNGKVDVL 376
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG G+A+
Sbjct: 377 VATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGHSGTAV 423
>gi|383316474|ref|YP_005377316.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043578|gb|AFC85634.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 603
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 231/382 (60%), Gaps = 13/382 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L + +I+ AL G PIQ A + P ++GRD++G+A+TGTGKT AF +P+L +I
Sbjct: 16 SALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTGTGKTAAFALPVLSRI 75
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ + K P LVLAPTRELA QV + F A P + +YGG Q++AL
Sbjct: 76 ERDSNK------PQALVLAPTRELAIQVAEAFQRYAAHMPGFHILPIYGGQSYGPQLQAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV +VGTPGRVID + R +L+LSE++F+VLDEAD+ML +GF +DVE +LE P RQ
Sbjct: 130 RRGVQVIVGTPGRVIDHLTRGSLDLSELKFLVLDEADEMLRMGFIDDVEKVLEATPPTRQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSATMP IR + ++LK P+ V + + + Y + +++ ++ I
Sbjct: 190 VALFSATMPSQIRKIAQQHLKTPVEVTIKAATSTN-TNIRQRYWWVSGLHKLDAMTR--I 246
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E IVF +TK+ + L+ + A+ + ++GDI+Q QRER + +DG+ +IL
Sbjct: 247 LEAESFDAMIVFARTKQATEELSERLQARGFAAAAINGDIAQPQRERVIQQLKDGKLDIL 306
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++ +++
Sbjct: 307 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRA 366
Query: 458 IERDVGCRFTQLPRIAVEGGGD 479
IER ++ +E D
Sbjct: 367 IERATRQPIEEMKLPTIEAVND 388
>gi|386717711|ref|YP_006184037.1| cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
gi|384077273|emb|CCH11859.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
Length = 651
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 234/385 (60%), Gaps = 13/385 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 15 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 74
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 75 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 128
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 129 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 188
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 189 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALTR 247
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 248 --ILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 305
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 306 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGM 365
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGD 479
++ IER ++ +VE D
Sbjct: 366 LRQIERATRQPIEEMQLPSVEAVND 390
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 228/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ ++L+I +++ G +L PIQ+ + A+ G D+IG+A+TGTGKT AFGIP+L
Sbjct: 1 MEFNQLNIKPELIQIFDELGFEELTPIQRDAIPIALTGDDLIGQAQTGTGKTAAFGIPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMR 216
+ + N R L++APTRELA QV++E + L VYGGTPI Q+
Sbjct: 61 EHLDLSN------RTIQGLIIAPTRELAIQVQEELYRYGKLLKAKVYSVYGGTPIGKQIE 114
Query: 217 ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L Y +VGTPGR++DL+ RN L+ S+++ +VLDEAD+ML++GF ED+ I+ P
Sbjct: 115 RLKRYNPQIIVGTPGRILDLMNRNVLDFSQLEQLVLDEADEMLNMGFIEDIRAIIRATPD 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+M+FSATMP I++L ++L++P V + ++ Q AD I Y S EK I+
Sbjct: 175 SRQTMLFSATMPSEIKALAEEFLRHPQHVQI--EAQQMTADLIDQYFTKCSDGEKFDILT 232
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ I H + I+F +TK+ D + +A + YN E +HGDI+Q +R + +DG
Sbjct: 233 RFIDIH-NPKQAIIFCRTKKRVDEVGRGLALRGYNAEMIHGDITQQKRTSVIKELKDGVL 291
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK+G +I T +
Sbjct: 292 EILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSITFVTHNEMAY 351
Query: 455 VKSIER 460
+K+IE+
Sbjct: 352 LKTIEQ 357
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 239/400 (59%), Gaps = 16/400 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + +K G LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISSLCDNEKKKGVK----ALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGR++D I R L L + F++LDEAD+ML++GF ED+E I+E P
Sbjct: 118 IKDIKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTP 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAAIKKLALNYMKED--VEHIAILKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
N L+ATDVAARG+DV N+ +I+Y++P +E++VHR GRTGRA K+G+A + T ++
Sbjct: 295 TLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354
Query: 453 RQVKSIERDVGCRFT--QLPRIA--VEGGGD-MYNDMGGR 487
++ IER + T +LP + +E D + ND+ +
Sbjct: 355 SSIRQIERITKSKITKKELPTLEDILEKKYDNLLNDITSK 394
>gi|116253340|ref|YP_769178.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. viciae 3841]
gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 576
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 226/372 (60%), Gaps = 8/372 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 18 NFESLGVSKPIVATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 77
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 78 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 136
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 137 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 196
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 197 QTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVGGKNDKTELLRK 254
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 255 SLTENPDG-RAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 313
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+ +
Sbjct: 314 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 373
Query: 456 KSIERDVGCRFT 467
+ IER +G T
Sbjct: 374 RDIERLMGIDIT 385
>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 543
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 260/453 (57%), Gaps = 25/453 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ L IS ++ LA +GI + +Q+ + ++GRD+I +A+TGTGKTLAF +PIL
Sbjct: 22 LNFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPIL 81
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
+KI N + L++ PTRELA Q+ E E P L+ + VYGG + Q+
Sbjct: 82 EKIDPSNG------STQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQL 135
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L VV TPGR++D ++R + L EV F+VLDEADQML +GF ++E+I+ + P
Sbjct: 136 HKLQRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPA 195
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATSMYEKPSII 334
+RQ+M+FSATMP IR L+ K+LK P ++ + +K + +++++ T ++ ++I
Sbjct: 196 SRQTMLFSATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFT--TDRAKQNALI 253
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
++ + I+F +T R A +L A+ ++ ++CE LHGD++Q++RE+ + FR+
Sbjct: 254 SRI--REDRPFLAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAE 311
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
LIATDVAARGLDV V + +Y++P SE++VHR GRTGRAGK G A+ Y ++
Sbjct: 312 IQFLIATDVAARGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEA 371
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSG 513
+K+IE+++ R LP+ + D G +S G DR R G +
Sbjct: 372 ALKAIEQELNIR---LPKEESTATANTTAD-GEKSSSGD-----KPKNRSDRDRRAGGAE 422
Query: 514 FGRSGGYRSPGSGRYGGNNSSYSGQGGGSSSGG 546
R G R+ G G S+ SG+ SS G
Sbjct: 423 SRRRTGGRTEGRGSR-EVRSTRSGERRNRSSEG 454
>gi|424918576|ref|ZP_18341940.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392854752|gb|EJB07273.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 567
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 224/369 (60%), Gaps = 8/369 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + L V GG I+ Q
Sbjct: 63 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A++L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L YL +P+ V++ K AD + Y +K ++ +
Sbjct: 182 QTMLFSATMPKAIADLAGDYLVDPVKVEVTPPG--KAADKVEQYVHFVAGKNDKTELLRK 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 240 SLTENPDG-RAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+ +
Sbjct: 299 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 358
Query: 456 KSIERDVGC 464
+ IER +G
Sbjct: 359 RDIERLMGI 367
>gi|427702212|ref|YP_007045434.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345380|gb|AFY28093.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 640
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 231/363 (63%), Gaps = 17/363 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ Q+++ LA G + PIQKA + M GRD++G+A+TGTGKT AFG+P+L+++
Sbjct: 85 LRQELLDGLAAIGFEEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFGLPLLERL---- 140
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYGV 222
G+ R P LVL PTRELA QV + F+ A + + VYGG Q++ L GV
Sbjct: 141 -DPGQ-RTPQVLVLTPTRELAMQVAEAFNSYAARMKGVKVLPVYGGADFRDQIQQLRRGV 198
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DV+ +LE+LP RQ ++F
Sbjct: 199 QIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVKWVLEQLPAERQVVLF 258
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG--ISLYSIATSMYEKPSIIGQLITE 340
SATMPP IR ++ +L+NP + + QK ADG I + + +K + +++
Sbjct: 259 SATMPPEIRRISQNHLRNPAEITI----RQKAADGRRIRQRHLVVNGPQKLEALERVLEA 314
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK +A ++ + Y+ L+GD+ Q+QRERT+ RDGR N+L+A
Sbjct: 315 EGSEG-VIIFARTKAITLTVAESLEQHGYDVAVLNGDVPQTQRERTIERLRDGRVNVLVA 373
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + L+I+Y++P E +VHR GRTGRAG+ G AIL T ++ R + +E
Sbjct: 374 TDVAARGLDVDRIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLE 433
Query: 460 RDV 462
R V
Sbjct: 434 RAV 436
>gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
29909]
gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
29909]
Length = 667
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 231/375 (61%), Gaps = 14/375 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S I++AL G K PIQ + + GRD++G A+TG+GKT AFG+P+L I
Sbjct: 10 ADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI 69
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
++P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 70 ------KAELKSPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQLRAL 123
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE IL ++P Q
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K+P V + + S + + + +++ L
Sbjct: 184 TALFSATMPDAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALVRFLE 243
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E I+F +TK +A A+ S YNC L+GD++QS RE+TL+ +DGR +IL
Sbjct: 244 SEDFDA--AIIFVRTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDIL 301
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 302 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQN 361
Query: 458 IERDVGCRF--TQLP 470
IER + QLP
Sbjct: 362 IERTMKLTIPEVQLP 376
>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9303]
Length = 636
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 158/361 (43%), Positives = 222/361 (61%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+++++
Sbjct: 91 SEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERL----- 145
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
G P LVLAPTRELA QV F A P L + VYGG Q+ L GVD
Sbjct: 146 -QDHGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGVD 204
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++D +++ L+ S ++ +VLDEAD+ML +GF +DVE ILE+LP+ RQ ++FS
Sbjct: 205 VVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPKERQMVLFS 264
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP IR L+ +YL P + + DQ+ A I I K + +++ E
Sbjct: 265 ATMPSEIRRLSKRYLHEPAEIT-IKSRDQE-ARLIRQRCITLQNSHKLEALRRVL-EAFT 321
Query: 344 GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK +A A+ + ++ L+GD+ Q+QRERT+ R G NIL+ATDV
Sbjct: 322 GEGVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDV 381
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL ++ R V ER V
Sbjct: 382 AARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGFERAV 441
Query: 463 G 463
G
Sbjct: 442 G 442
>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 562
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 237/387 (61%), Gaps = 19/387 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L + +++ ALA G + IQ+ + ++GRD++G+A TGTGKT AF +P
Sbjct: 8 EQFSFADLGLRPELLDALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLP 67
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
IL ++ + RG P L+L PTRELA QV + H L + +YGG PI Q
Sbjct: 68 ILHRLPDSD----RGDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQ 123
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D I R L L V+ VVLDEAD+ML +GFAED+E I+E +P
Sbjct: 124 LRALERGVDVVVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVP 183
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS-----DQKLADGISLYSIATSMYE 329
+NRQ+++FSATMP I + ++L +P+ V + S + K+ + Y +A
Sbjct: 184 ENRQTVLFSATMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQ--NAYIVARPY-- 239
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
KP+ +G+++ + +VF +T+ + D+L + A+ Y E LHG +SQ QR+R ++
Sbjct: 240 KPAALGRVLDMESPTA-ALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMAR 298
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
R G ++LIATDVAARGLD+ ++ +++Y +P+ +ET+VHR GR GRAG++G AI +
Sbjct: 299 LRGGTADLLIATDVAARGLDIEHLTHVVNYNVPSATETYVHRIGRVGRAGREGVAITLVE 358
Query: 449 DQQARQVKSIERDVG--CRFTQLPRIA 473
++ R +K+I+R +LP +A
Sbjct: 359 PREHRMLKTIQRSTSGPISVEKLPTVA 385
>gi|345889425|ref|ZP_08840430.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
gi|345039614|gb|EGW43936.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
Length = 594
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 231/378 (61%), Gaps = 18/378 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +SQ+++ A+ G + PIQ + + G+D +G+A+TGTGKT AFG+PIL+KI
Sbjct: 6 TELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEKI 65
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRAL 218
G++ LVL PTRELA QV +E + A + + +YGG PI Q+RAL
Sbjct: 66 -------ASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRAL 118
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID ++R L LSE + VVLDEAD+ML +GF ED+E+ILE+ P + Q
Sbjct: 119 AKGAQVVVGTPGRVIDHLQRGTLRLSEARIVVLDEADEMLDMGFREDIELILEQSPADCQ 178
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSIIGQL 337
++FSATMP IR L+ ++L+ P +++ + + L I Y+K + ++
Sbjct: 179 RVLFSATMPQPIRELSKRFLREP---EMLTIAHKMLTVPAIEQVYYEVRPYQKMDALCRV 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K +VF TKR D + H + Y + LHGD++Q+QR+R +S FR I
Sbjct: 236 LDSQG-FRKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEI 294
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARG+DV +VD +I+Y++P+ E +VHR GRTGRAG++G A T ++ +++
Sbjct: 295 LVATDVAARGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQYKIR 354
Query: 457 SIERDVGCRFT--QLPRI 472
I R R QLP +
Sbjct: 355 EIIRYTKARIQPGQLPTL 372
>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 567
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 224/369 (60%), Gaps = 8/369 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + L V GG I+ Q
Sbjct: 63 KLLA-DERRPDNRTTRTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A++L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L YL +P+ V++ K AD + Y +K ++ +
Sbjct: 182 QTMLFSATMPKAIADLAGDYLVDPVKVEVTPPG--KAADKVEQYVHFVAGKNDKTELLRK 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G + IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 240 SLTENPDG-RAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+D+P V + +Y+LP + +VHR GRT RAG+ G AI +A+ +
Sbjct: 299 TLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLL 358
Query: 456 KSIERDVGC 464
+ IER +G
Sbjct: 359 RDIERLMGI 367
>gi|406934671|gb|EKD68890.1| hypothetical protein ACD_47C00384G0003, partial [uncultured
bacterium]
Length = 637
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 163/377 (43%), Positives = 219/377 (58%), Gaps = 21/377 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L+IS+ I A A G + PIQ + + GRD+IG+A+TGTGKT AF IPIL
Sbjct: 4 LKFTELNISEKIQRAAADMGFEEASPIQAETIPILLAGRDLIGQAQTGTGKTAAFAIPIL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQM 215
+KI + LVL PTREL QV +EF +L + VYGG I Q+
Sbjct: 64 EKI------DHETKELQALVLCPTRELVIQVTEEFRRLTKYFFNLAIVPVYGGQEIDRQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL VVGTPGR++D ++R + L +++FVVLDEAD+ML +GF ED+E IL+ P
Sbjct: 118 DALKRKPQIVVGTPGRLMDHMRRATIKLDKLRFVVLDEADEMLDMGFREDMETILKDTPA 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSII 334
RQ++MFSATMP I LT K+ KNP +D+ S K+ A I + KP +
Sbjct: 178 ERQTIMFSATMPEDIAQLTKKFQKNPARIDV---SCHKMNAPKIEQFYYELLEKSKPEAL 234
Query: 335 GQLITEHAKGGK-CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+LI + G K +VF TK D L + + Y E LHGD++Q R++ +S FR G
Sbjct: 235 ARLIDFY--GVKLALVFCNTKMRVDELVEVLKTRGYLAEALHGDLNQRMRDKVMSGFRSG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
IL+ATDVA RG+DV +V+ + +Y+LP E +VHR GRT RAGK G A T +Q
Sbjct: 293 LIEILVATDVAGRGIDVNDVEAVFNYDLPRDDEDYVHRIGRTARAGKSGKAFTFVTSRQL 352
Query: 453 RQVKSIERD----VGCR 465
+K IERD V CR
Sbjct: 353 SNLKRIERDFDLKVSCR 369
>gi|399524825|ref|ZP_10765330.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398373862|gb|EJN51687.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 609
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 218/347 (62%), Gaps = 9/347 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+ +I +
Sbjct: 78 VTDPIVDALDDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPD 137
Query: 166 EKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E+ P L++ PTREL KQV ++ ++A L T + +YGG Q+ AL
Sbjct: 138 EEGYEDLLNPNQPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAFEPQIEALT 197
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P+NR +
Sbjct: 198 RGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLARVPENRHT 257
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + +L +++ +P + DQ + + + K ++ +++
Sbjct: 258 MLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEVVARIL 317
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ ++F +TKR A RL + + + LHGD+ Q RE+ L AFR+G+ ++L
Sbjct: 318 QAEGR-GRTVIFCRTKRTAARLGEDLTDRGFAVGALHGDLGQGAREQALRAFRNGKVDVL 376
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG G+A+
Sbjct: 377 VATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAV 423
>gi|429729511|ref|ZP_19264170.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
gi|429149535|gb|EKX92513.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
Length = 677
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 240/402 (59%), Gaps = 13/402 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
L + +++ A+ + G PIQ + M G D++G A+TGTGKT AF +PIL +I
Sbjct: 72 ENLGLPSEVLKAITKVGFETPSPIQAHTIPVLMDGHDVVGLAQTGTGKTAAFALPILSRI 131
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL 218
R P LVLAPTRELA QV F A SL+ + +YGG Q+ L
Sbjct: 132 ------DPSVRAPQALVLAPTRELALQVADSFQAFADHLGSLNVLPIYGGQAYGIQLSGL 185
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID +++ +L++S ++F+VLDEAD+ML++GF EDVE ILE P ++Q
Sbjct: 186 RRGAHIVVGTPGRVIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDDKQ 245
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSATMP IR ++ +YLK+P + + S+ + I+ + + K + +++
Sbjct: 246 VALFSATMPSAIRRMSKQYLKDPREITV--KSETRTNTNITQKFLNVAHRNKLDALTRIL 303
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I+F +TK + + LA + A+ ++ ++GDI+Q+QRERT+ +DGR +IL
Sbjct: 304 -EVTEFAAMIMFVRTKHETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDIL 362
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G AIL T ++ R ++S
Sbjct: 363 VATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS 422
Query: 458 IERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYA 499
IER ++ V+ + + S S+ D Q +
Sbjct: 423 IERATNATLVEMELPTVDEVNESRKEKFADSITESLEDNQIS 464
>gi|405982153|ref|ZP_11040477.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
gi|404390944|gb|EJZ86010.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
Length = 515
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 229/375 (61%), Gaps = 24/375 (6%)
Query: 88 VAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
V D + + E L++ K +S I ALA GI+ FPIQ L A++G D+IG+
Sbjct: 20 VQADITDEGEALELHKKTFADFGVSASICQALAEEGITHPFPIQALTLPVALKGNDIIGQ 79
Query: 143 ARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
A+TGTGKTL FGIP L++I+ E K P L++ PTRELAKQV ++ +A
Sbjct: 80 AKTGTGKTLGFGIPALEQIVGPQEDGYEKLLNAGCPQALIILPTRELAKQVARDLKVAAK 139
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
S+ +YGG Q++AL+ G D VVGTPGR+IDL+K L LS V+ VVLDEAD+
Sbjct: 140 NRSVRITQIYGGVAFEPQLKALEKGTDLVVGTPGRLIDLLKHGKLKLSGVKVVVLDEADE 199
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
ML +GF DVE +L R P R +M+FSATMP + +L +Y+ +P + +DQ
Sbjct: 200 MLDLGFLPDVETLLSRTPAGRHTMLFSATMPGEVIALARRYMSHPTHIRAQDPADQ---- 255
Query: 317 GISLYSIATSMY-----EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYN 369
++ S+ +Y K ++ +++ AKG G I+FT+TKR A RLA ++ + +
Sbjct: 256 NATVNSVKQVVYRCHAMNKLEVVSRIL--QAKGRGLSIIFTRTKRTAARLADDLSDRGFA 313
Query: 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429
LHGD+ Q RE+ + AFR G+ ++L+ATDVAARG+DV +V +I+Y+ P + ++H
Sbjct: 314 AAALHGDLGQGAREQAMRAFRKGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLH 373
Query: 430 RTGRTGRAGKKGSAI 444
R GRTGRAG G+AI
Sbjct: 374 RIGRTGRAGASGTAI 388
>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399989304|ref|YP_006569654.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|441213695|ref|ZP_20975941.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399233866|gb|AFP41359.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|440625659|gb|ELQ87505.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
Length = 581
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 162/392 (41%), Positives = 239/392 (60%), Gaps = 14/392 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V DS+ E + L I ++ A+ G IQ A + P + G D++G A+TGT
Sbjct: 11 VTNSDSAPTEP-TFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGT 69
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTIC 204
GKT AF IPIL KI R+ LVLAPTRELA QV + F P ++ +
Sbjct: 70 GKTAAFAIPILSKI------DTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLP 123
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG+ + Q+ L G VVGTPGRVID ++R L+LS++ ++VLDEAD+ML++GFAE
Sbjct: 124 IYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAE 183
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+VE IL P+ +Q +FSATMP IR +T KYL +P+ V + + A+ IS I
Sbjct: 184 EVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTV--KAKTATAENISQRFIQ 241
Query: 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRE 383
+ K + +++ E +G IVF +TK+ + +A + A+ + ++GDI+Q+QRE
Sbjct: 242 VAGPRKMDALTRIL-EVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE 300
Query: 384 RTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSA 443
RT+SA +DG +ILIATDVAARGLDV + +I+Y++P+ +E++VHR GRTGRAG+ G A
Sbjct: 301 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA 360
Query: 444 ILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
+L T ++ +KSIE+ + + +VE
Sbjct: 361 VLFVTPRERHLLKSIEKATRSKLIEAELPSVE 392
>gi|433457741|ref|ZP_20415720.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432194443|gb|ELK51067.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 635
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 225/358 (62%), Gaps = 17/358 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++AAL G K PIQ A + ++GRD++G A+TGTGKT AF IP L ++ +
Sbjct: 35 VLAALTDVGYEKPSPIQAATIPALLEGRDVVGLAQTGTGKTAAFAIPALSRMAELPPT-- 92
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYGVDAVV 226
+N LVLAPTRELA QV + F A ++ + VYGG+ Q+ L G VV
Sbjct: 93 --KNTQILVLAPTRELALQVAEAFSSYAAHMEDFTVLPVYGGSAYGPQLAGLRRGAQVVV 150
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVID I++ +L+LSE+Q+VVLDEAD+ML +GFAE+V+ IL+ P+ +Q +FSATM
Sbjct: 151 GTPGRVIDHIEKGSLDLSELQYVVLDEADEMLRMGFAEEVDRILDATPEEKQVALFSATM 210
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSIIGQLITEHAK 343
P IR + KYLK+P + + K + G ++ Y ++ ++ L TE
Sbjct: 211 PTAIRRIAKKYLKDPAEISV----KSKTSTGTNIRQRYVQVMGAHKLDAMTRILETEEFD 266
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I F +TK + LA + A+ + ++GDI Q QRERT+ A R+G+ +IL+ATDV
Sbjct: 267 G--VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTVEALREGKIDILVATDV 324
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
AARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G AIL T ++ +++IE+
Sbjct: 325 AARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDAILFMTPREKYLLRAIEK 382
>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 599
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 17/373 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S+ ++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+ I
Sbjct: 10 ELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNAI- 68
Query: 163 KFNEKHGRGRN-PLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRAL 218
RN P LVLAPTRELA QV + F + L + +YGG + Q+ AL
Sbjct: 69 ------DPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+D ++R L L + +VLDEAD+ML +GF +D+E ILE PQ RQ
Sbjct: 123 RRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+FSATMP I+ + NKYL+ P+ + + + + I + S + K +++ L
Sbjct: 183 LALFSATMPEQIKRVANKYLQTPVHISIA--ASHTTVESIEQRFVQVSQHNKLEALVRVL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +I
Sbjct: 241 EVENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + +I+Y++P +E +VHR GRTGRAG+ G AIL T ++ R ++
Sbjct: 299 LIATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLR 358
Query: 457 SIERDVGCRFTQL 469
+IER R + +
Sbjct: 359 TIERATKSRISPM 371
>gi|359768236|ref|ZP_09272012.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|378717409|ref|YP_005282298.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
gi|359314324|dbj|GAB24845.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|375752112|gb|AFA72932.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
Length = 587
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 233/388 (60%), Gaps = 13/388 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D + + LDI + +A+A G PIQ A + P M GRD++G A+TGTGKT
Sbjct: 8 DRPDADAITFDDLDIDDRVRSAIAEVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTA 67
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF IPIL +I R P L+LAPTRELA QV + F + P + + +YGG
Sbjct: 68 AFAIPILSRIDPAV------RRPQALILAPTRELALQVSEAFSRYSAHMPEVRVLPIYGG 121
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID + + L++SE++++VLDEAD+ML++GFAEDVE
Sbjct: 122 QSYGVQLAGLRRGAQVIVGTPGRVIDHLDKGTLDISELEYLVLDEADEMLTMGFAEDVER 181
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL P ++Q +FSATMP IR L KYL +P + + S A I+ + S
Sbjct: 182 ILAETPDSKQVALFSATMPSAIRRLAQKYLHDPQEITV--KSKTATAQNITQRYLQVSHQ 239
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + + + E IVF +TK+ + LA + A+ ++ ++GD+ Q+QRERT++
Sbjct: 240 RKLDALTRFL-EVETFDAMIVFVRTKQATEELAERLRARGFSAVAINGDMVQAQRERTIN 298
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 299 QLKDGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFV 358
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVE 475
+ ++ +++IER T++ +VE
Sbjct: 359 SPRERHLLRAIERATRQPLTEIGLPSVE 386
>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 666
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 217/368 (58%), Gaps = 25/368 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ D+SQ+ L R G++ LFP+Q + M+G D++GR++TG+GKTLAF +P ++
Sbjct: 84 IADFDLSQETQRNLERAGVTHLFPVQTQSFDVMMKGSDIMGRSKTGSGKTLAFALPTIET 143
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
I+ N K+ R NP LVL PTRELA+QV + AP L TI V GG + Q L
Sbjct: 144 ILA-NRKNTR--NPQALVLLPTRELAQQVHDQVQRVAPQLRTINVVGGVSYTVQENQLRR 200
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD +VGTPGR++DL+ + +L+L +V VLDEAD ML GF E VE IL +P Q++
Sbjct: 201 GVDILVGTPGRIMDLVDKGSLSLEDVDVSVLDEADMMLKFGFQEAVETILGWVPDGGQTL 260
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+ +DLVGD+D + ++ +I ++ ++ ++
Sbjct: 261 ---------------------VNIDLVGDNDNHVPATVAHKAILAPSRDRIQVLENVLRL 299
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HA G+ +VFT+TK++AD +A+++ + LHGD+SQ R T++ FR+G L+ T
Sbjct: 300 HAHDGQTLVFTETKQEADEIANSLP-GQDARALHGDLSQGMRTSTMNGFRNGHVKTLVCT 358
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
D+AARGLD+ NV+L++ Y LP+ E+FVHR GRTGRAG+ G+ I+ + V ER
Sbjct: 359 DIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGRAGRSGTNIVFFDRNDTSDVLDFER 418
Query: 461 DVGCRFTQ 468
+F
Sbjct: 419 RYKFKFAH 426
>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
gi|452077305|gb|AGF93269.1| DEAD/DEAH box helicase domain-containing protein [uncultured
organism]
Length = 431
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 230/367 (62%), Gaps = 22/367 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L++S+DI A+ G + PIQ + MQGRD+IG+A+TGTGKT AFGIP L+K+
Sbjct: 7 NELNLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPALEKV 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ ++K +VL PTRELA QV E ++ A + + +YGG PI Q++AL+
Sbjct: 67 DRNSKKVQ------TIVLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKALN 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G V+GTPGR++D ++R+ L+L V+ VLDEAD+ML +GF ED+E+IL +LP RQ+
Sbjct: 121 KGAQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQT 180
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSII 334
+FSATMP I +T KY NP +L+ +KL ++ + + +E KP +
Sbjct: 181 TLFSATMPGPIMKMTKKYQDNP---ELIKTVHKKL----TVPQVEQTYFEVKERSKPEAL 233
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L T+ +VF TK+ D L + + Y + LHGD+ Q QR++ +S F++G
Sbjct: 234 CRL-TDFYNIKSSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNGE 292
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
L+ATDVAARG+DV N++++ +Y++P E++VHR GRTGRAGK+G A ++
Sbjct: 293 IETLVATDVAARGIDVENIEVVFNYDVPQDEESYVHRIGRTGRAGKQGKAFTFAFGKEIY 352
Query: 454 QVKSIER 460
++K I++
Sbjct: 353 KIKDIQK 359
>gi|374581781|ref|ZP_09654875.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374417863|gb|EHQ90298.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 535
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/382 (41%), Positives = 235/382 (61%), Gaps = 27/382 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ ++ AL+ G + PIQK + A+ G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 12 IQLSKQLLQALSEMGFEEPSPIQKQAIPVALDGVDLIGQAQTGTGKTAAFGIPITEKV-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG 221
+ + + L++ PTRELA QV +E + + + +YGG PI Q+RAL G
Sbjct: 70 ----NSKFQAVQALIVTPTRELAIQVSEEIAKLGKYRHVKPLPIYGGQPIDRQIRALRMG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSM 280
VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E +L +P+ RQ +
Sbjct: 126 YQVVVGTPGRLLDHLNRGTLRLQHVKMVVLDEADEMLDMGFIDDIESLLREVPEEGRQVL 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSIIG 335
+FSATMPP IR L Y+ P +V + D +++ I YE K +G
Sbjct: 186 LFSATMPPGIRKLAQTYMNAPRSVTVSRDE-------LTVPLIDQVFYETRESIKVDALG 238
Query: 336 QLI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
++I TE G+ I+F +TKR D L ++ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 239 RIIDTEDI--GQGIIFCRTKRGVDELVVSLEARGYFADALHGDLSQQQRDRVMKRFRDGK 296
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+L+ATDVAARGLD+ NV +I++++P ++VHR GRTGR G+KG AI + + ++ R
Sbjct: 297 TELLVATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYR 356
Query: 454 QVKSIERDVGCRF--TQLPRIA 473
Q++ IE + R +LP +A
Sbjct: 357 QLRLIENLIKTRIRRQELPSLA 378
>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
Length = 593
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 224/352 (63%), Gaps = 19/352 (5%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-- 163
+ +IV ALA GI FPIQ L AM G D+IG+A+TGTGKTL FG+P+L +++
Sbjct: 21 VRPEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHRVVAPG 80
Query: 164 ---FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
++E G+ P LV+ PTRELA QV K+ ++ S+ + +YGG Q++AL
Sbjct: 81 EPGYDELPAPGK-PQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQVKAL 139
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GV+ VVGTPGR+IDL+K+ L+L+ Q VVLDEAD+ML +GF DVE +L R P R
Sbjct: 140 EQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTPAVRH 199
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----EKPSI 333
+M+FSATMP + ++ +Y+K P + D D G ++ +I +Y +K +
Sbjct: 200 TMLFSATMPGAVVAMARRYMKQPTHIR-ANDPDDG---GQTVKNIKQVVYRAHALDKVEV 255
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G IVF +TKR A ++A +A + + +HGD+ Q RE+ L AFR G
Sbjct: 256 LARILQSEGR-GLSIVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSG 314
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ ++L+ATDVAARG+DV V +++Y+ P +T++HRTGRTGRAG KG+A+
Sbjct: 315 KIDVLVATDVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAV 366
>gi|345009475|ref|YP_004811829.1| DEAD/DEAH box helicase [Streptomyces violaceusniger Tu 4113]
gi|344035824|gb|AEM81549.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
Tu 4113]
Length = 559
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 236/388 (60%), Gaps = 21/388 (5%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + + L + +++ ALA G + PIQ+ + P + GRD++G+A TGTGKT AF +P
Sbjct: 8 EQIGFADLRLRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALP 67
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I + G G P LVL PTRELA Q + H L T + VYGG PI Q
Sbjct: 68 VLQRI----SQDGGGAEPSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQ 123
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D I R L L ++ +VLDEAD+ML +GFAED++ ILE P
Sbjct: 124 LRALERGVDVVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTP 183
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG------ISLYSIATSMY 328
+RQ+++FSATMP I ++ ++L+ P+ + + +K A G S Y +A +
Sbjct: 184 ADRQTVLFSATMPARIDAMARRHLRGPVRIQI---EREKPAPGETPKVRQSAYVVARA-- 238
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
+KP+ +G+++ + IVF +T+ D+L + + Y E LHG + Q QR+R +
Sbjct: 239 QKPAALGRVLDVESPEA-TIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMG 297
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
R G ++L+ATDVAARGLD+ + +++Y++P+ E++VHR GR GRAG++G AI +
Sbjct: 298 RVRGGTADLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLA 357
Query: 448 TDQQARQVKSIERDV--GCRFTQLPRIA 473
++ R +K+IER R ++P +A
Sbjct: 358 EPREHRMLKAIERTTRRQIRVEKVPTVA 385
>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 537
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 233/367 (63%), Gaps = 19/367 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ DIS + A+ G + PIQ+ + + G D+IG+A+TGTGKT AFGIP++DK+
Sbjct: 5 TDFDISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPVVDKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ R L+L PTRELA QV E + + + T+ +YGG I HQ++AL
Sbjct: 65 TE-------ERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGR++D ++R L L+ V VVLDEAD+ML +GF +D+E IL+ + Q RQ+
Sbjct: 118 QGVQVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI--IGQL 337
++FSATMPP IR L+ KY+ +P TV + ++ S+ + + E+ I + ++
Sbjct: 178 LLFSATMPPAIRKLSRKYMNDPKTVTI----NKGEVTAPSINQVYYKVLERNKIDSLCRI 233
Query: 338 I-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
I ++ + G I+F +TK+ L A+ A+ Y + LHGD++QSQR+ + FRD
Sbjct: 234 IDSDDVELG--ILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIE 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
LIATDVAARG+DV NV +I+Y++P E++VHR GRTGRAG+ G+AI + T ++ + +
Sbjct: 292 FLIATDVAARGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHL 351
Query: 456 KSIERDV 462
+SIE+++
Sbjct: 352 RSIEKEI 358
>gi|390454874|ref|ZP_10240402.1| DEAD/DEAH box helicase [Paenibacillus peoriae KCTC 3763]
Length = 524
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/383 (39%), Positives = 230/383 (60%), Gaps = 17/383 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V L +GI+ P+Q+ + MQ +D+I A TGTGKTLAF +PIL
Sbjct: 3 NFAALGVEQHWVDVLKEQGITAPTPVQQESIPLLMQDQDVIAEAHTGTGKTLAFLLPILQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMR 216
K+ + R P LV+APTRELA Q+ +E A P+L + VYGG + Q+R
Sbjct: 63 KM------NLEKRYPQALVIAPTRELALQITEEAKRLAAIEPNLSLLAVYGGQDVERQLR 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L V+ +VLDEADQML +GF DVE IL+ +P
Sbjct: 117 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGVKMLVLDEADQMLHMGFLNDVETILQEVPYR 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 177 RQTMLFSATMPAGIRKLARVYMNEPIDVKVKSASSVPVSQIRQVVVQTTDRGKQRALVDM 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T+ ++F +TKR A +L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 237 LNTDRPY--LAVIFCRTKRRAAKLNEELQEMGFASGELHGDLSQNKREQVMKAFREAKLQ 294
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV V + +Y++P +E+++HR GRTGRAG KG A+ + T + ++
Sbjct: 295 LLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPEL 354
Query: 456 KSIERDVGCRFTQLPRIAVEGGG 478
++I++ G FT + EGGG
Sbjct: 355 RNIQKVAGVTFT-----SSEGGG 372
>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 529
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 246/395 (62%), Gaps = 15/395 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L+I +DI+ + G PIQ + G D+IG+A+TGTGKT AFGIP+L+KI
Sbjct: 10 LNIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPMLEKI-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDY 220
+ + + P L+LAPTREL+ QV E + + L +I +YGG PI Q++AL
Sbjct: 68 ----NPQQKTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKALKQ 123
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV+ VVGTPGR++D I+R L L ++ +VLDEADQML +GF++D+E IL+ P RQ++
Sbjct: 124 GVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQTV 183
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-T 339
MFSATMP I + KY+KNP V +V + IS Y +EK + +++
Sbjct: 184 MFSATMPKEIEEIAKKYMKNPKKVKVV--HKELTVPKISQYYFEVRPHEKLDALCRILDM 241
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E+++ G I+F +TK+ D L + ++ Y+ E +HGD+ QSQR+R + FRDG +++I
Sbjct: 242 ENSELG--IIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLDLMI 299
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV +VDL+++Y++P E +VHR GRTGRAG++G A + T +Q R +K++
Sbjct: 300 ATDVAARGIDVDDVDLVVNYDVPEDFEYYVHRIGRTGRAGREGLAYTLVTGKQIRTLKAL 359
Query: 459 ERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSM 493
E + + + P + + +M G+ G++
Sbjct: 360 EAYIKGKIKRKPIPTINDIVEKKKEMIGKEIIGNI 394
>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 640
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 226/366 (61%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+ G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
Length = 539
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 230/368 (62%), Gaps = 15/368 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L I ++I A+ G + PIQ + + G D+IG+A+TGTGKT AFGIP++
Sbjct: 6 IKFNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+K+ GR+ L+L PTRELA QV E + + + T+ +YGG I HQ++
Sbjct: 66 EKV-------STGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV V+GTPGR+ID ++R L L V V+LDEAD+ML +GF +D+E IL ++
Sbjct: 119 ALKQGVQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+ L+ KY+ +P TV + + + A I + K + +
Sbjct: 179 RQTLLFSATMPPAIKKLSRKYMNDPQTVSI--NRREVTAPSIDQFYYKVLERNKLDSLCR 236
Query: 337 LI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I +E G I+F +TK+ L A+ A+ Y + LHGD++QSQR+ + FRD
Sbjct: 237 IIDSEQIDLG--ILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSI 294
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
LIATDVAARG+DV NV +I+Y++P E++VHR GRTGRAG+KG A+ + T ++ +
Sbjct: 295 EFLIATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKH 354
Query: 455 VKSIERDV 462
++SIE+++
Sbjct: 355 LRSIEQEI 362
>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990915|ref|YP_001902925.1| cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris str. B100]
gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris]
Length = 642
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
+++IER
Sbjct: 360 LRAIER 365
>gi|373858358|ref|ZP_09601095.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372451825|gb|EHP25299.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 560
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/469 (35%), Positives = 253/469 (53%), Gaps = 50/469 (10%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D + IS+ +V L G+ PIQ+ + M+G D+I +A+TGTGKT AF +PIL+
Sbjct: 3 DFLSMGISEMLVEKLQESGVVTPTPIQEQAIPYVMKGNDIIAQAQTGTGKTFAFILPILE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMR 216
+ + L++ PTRELA Q+ EF + P +D + VYGG + Q++
Sbjct: 63 HL------DPEASHVQALIVTPTRELALQITGEFKKLINDLPGIDVLAVYGGQDVDKQLK 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L V VV TPGR++D I+R +NLSE+ +VLDEADQML +GF +VE I+++ P +
Sbjct: 117 KLKKNVQIVVSTPGRLLDHIRRGTVNLSEISSLVLDEADQMLQIGFLNEVEEIIDQTPAS 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMPP IR+L K+++ P + + + Q A ++ +I T K + +
Sbjct: 177 RQTMLFSATMPPEIRTLARKHMREPKYIQV--EKTQGPAQTVNQLAIHTVDRAKQATLIG 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI H + ++F +TKR +L A+ + Y C+ LHGD+SQ++RE+ + FRD
Sbjct: 235 LIEAH-RPFLAVIFCRTKRRVSKLYEALRSHGYKCDELHGDLSQAKREQVMKRFRDAEVQ 293
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+LIATDVAARGLDV V + +Y++P SE+++HR GRTGRAG G AI +Y + +
Sbjct: 294 LLIATDVAARGLDVEGVTHVYNYDIPLDSESYIHRIGRTGRAGMTGMAITLYASKDRPLL 353
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFG 515
IE+++ +++E + G+M + D DR +R S
Sbjct: 354 DLIEKELN--------LSIE-----------KQNLGNM--EKTDDETVDRPNRSSSSQME 392
Query: 516 RSGGYRSPGSGRYGGNNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSR 564
R GN SG+ G G RS KF P +R
Sbjct: 393 RR------------GNRKGRSGRTEGPRRQG----DKRSNKFEDPNITR 425
>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 587
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/365 (43%), Positives = 220/365 (60%), Gaps = 13/365 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S L I+ ++ AL G + PIQ+ + +G +++G A+TGTGKT AFG+P+L
Sbjct: 5 DFSALGIASPLLQALTDLGYQQPSPIQEQSIPILNEGHNLLGTAQTGTGKTAAFGLPLLG 64
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI + P LVLAPTRELA QV + F + P + + VYGG P+ Q++
Sbjct: 65 KI------DPSKKYPQMLVLAPTRELAIQVSEALQSFAKYLPKVKVLAVYGGQPMYQQLK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGTPGR++D ++R +L L ++ VVLDEAD+ML +GF EDVE IL P
Sbjct: 119 ALHDGVQVVVGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPR 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q +FSATMPP IR + +YL + V + S D I + +K ++ +
Sbjct: 179 CQCALFSATMPPAIRRVAERYLGDAQEVQIA--SRTSTVDQIEQRYLMLRANQKFDVLTR 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI G IVF +TK LA + A+ YN PL+GD+SQ RERT+ ++G +
Sbjct: 237 LIEAQEIDG-TIVFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLD 295
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
I+IATDVAARGLDV + + +Y++P +E ++HR GRTGRAG+ G+AIL T Q+ R +
Sbjct: 296 IVIATDVAARGLDVERISHVFNYDIPFDTEAYIHRIGRTGRAGRTGTAILFVTPQERRLL 355
Query: 456 KSIER 460
KSIER
Sbjct: 356 KSIER 360
>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
Length = 642
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
+++IER
Sbjct: 360 LRAIER 365
>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 496
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 234/367 (63%), Gaps = 13/367 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L IS+ ++ L + ++ PIQ+ + ++G+D+I +A+TGTGKTLAF +PI++
Sbjct: 7 LGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIENF-D 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRALDY 220
FN++ + L++ PTRELA Q+ +E + ++ I V YGG + Q+ L
Sbjct: 66 FNQQSIQ-----ALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQLNKLRK 120
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
V VVGTPGR++D I R ++LSE+ +VLDEADQML +GF ++VE+I+ P+ RQ++
Sbjct: 121 NVGIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRETPKTRQTL 180
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT+P I++L K++K+P + + + Q A + ++ + K + + ++I E
Sbjct: 181 LFSATIPDEIKTLAKKHMKSPEYISV--ERKQGPAKSVEQKAVFVNDRAKQATLIEMIKE 238
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + ++F +TKR +L A+A + + C+ LHGD+SQ++RE+ + FRD F +LIA
Sbjct: 239 Y-RPYLAVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQLLIA 297
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + + +Y++P ++++VHR GRTGRAG+KG A+ Y+ QQ Q+ IE
Sbjct: 298 TDVAARGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFYSPQQKDQLAEIE 357
Query: 460 RDVGCRF 466
+++ R
Sbjct: 358 KELNIRL 364
>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 648
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 225/366 (61%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 25 LLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 84
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
K P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 85 SNADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 138
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP
Sbjct: 139 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPA 198
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 199 QRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 257
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 258 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 315
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 316 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 375
Query: 455 VKSIER 460
++SIER
Sbjct: 376 LRSIER 381
>gi|334563107|ref|ZP_08516098.1| ATP-dependent RNA helicase [Corynebacterium bovis DSM 20582]
Length = 785
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/404 (39%), Positives = 241/404 (59%), Gaps = 13/404 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G + L + + ++ A+ G ++ PIQ + M+G D++G A+TGTGKT AF +P+
Sbjct: 135 GTTFADLGLPERVLRAVTSVGYTEPSPIQAETIPLLMEGHDVVGLAQTGTGKTAAFALPV 194
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQ 214
L I R+ LVLAPTRELA QV + F A SL + + VYGG Q
Sbjct: 195 LAGIDPTQ------RSTQALVLAPTRELALQVAESFQSFANSLGGVNILPVYGGQAYGVQ 248
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID + + +L+LS+++F+VLDEAD+ML++GF EDVE IL P
Sbjct: 249 LSGLRRGAHVVVGTPGRVIDHLAKGSLDLSDLRFMVLDEADEMLNMGFQEDVERILGDTP 308
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+Q +FSATMP IR L+ +YL NP + + S+Q+ A+ I+ + S K +
Sbjct: 309 DGKQVALFSATMPSGIRRLSKQYLNNPREITV--KSNQRTAENITQDFLMVSHRNKLDAL 366
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ E I+F +TK + + LA + + +N ++GDI+Q+QRERT+ +DGR
Sbjct: 367 TRIL-EVTDFEAMIMFVRTKNETEELAERLCDRGFNAAAINGDIAQAQRERTVDQLKDGR 425
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLDV + + +Y++P+ +E++VHR GRTGRAG+ G AIL T ++ R
Sbjct: 426 LDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERR 485
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
+K+IER ++ V+ D+ +S S+ D Q
Sbjct: 486 LLKAIERATKSTLNEIDLPDVDAVNDVRKRKFAQSLTESLSDPQ 529
>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
gi|417970048|ref|ZP_12610983.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045730|gb|EGV41400.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
Length = 729
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 240/398 (60%), Gaps = 13/398 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + ++ A+ + G PIQ + M+G+D++G A+TGTGKT AF +PIL +I K
Sbjct: 107 LGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSRIDK 166
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRALDY 220
R+P LVLAPTRELA QV F A L+ + +YGG Q+ L
Sbjct: 167 ------SVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR+ID +++ +L++S ++F+VLDEAD+ML++GF EDVE ILE P +Q
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L+ +YL NP ++ S+ + I+ + + K + +++ E
Sbjct: 281 LFSATMPNGIRRLSKQYLNNP--AEITVKSETRTNTNITQRFLNVAHRNKMDALTRIL-E 337
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+ +DGR +IL+A
Sbjct: 338 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + ++++++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 460 RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
R ++ V+ D S S+ D+Q
Sbjct: 458 RATNAPLHEMELPTVDQVNDFRKVKFADSITKSLEDKQ 495
>gi|384428616|ref|YP_005637976.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341937719|gb|AEL07858.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 642
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
+++IER
Sbjct: 360 LRAIER 365
>gi|397686716|ref|YP_006524035.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
gi|395808272|gb|AFN77677.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM
10701]
Length = 553
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAR------REPQALILAPTRELALQVATAFETYSKQMPGVGVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS +QF+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQIIVATPGRLVDHLSRNSALLSTIQFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + Q +A + + + + P+++ L
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVARIEQAHLMVHADQKIPAVLRLLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 242 VEDFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQ--LP--------RIAVEGGGDMYNDMGGRSGYGSMRDRQYADTG 502
IER + + LP RI G + +G + D+ AD G
Sbjct: 360 IERVTNQKVAEVRLPNAQQVLDARIKKLTNGLAPLVADAEASHGELLDKLIADIG 414
>gi|54302107|ref|YP_132100.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
Length = 623
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 229/377 (60%), Gaps = 14/377 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML +GF +DV I+E+ P +
Sbjct: 121 ALKNGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPAS 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G+ ++ ++ + I + + ++I
Sbjct: 181 AQRVLFSATMPPIVKQIVDRFLRNPERIDVAGE-NRTVSQVSQQFWIVKGVEKDEAMIRM 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L TE IVF +T++D +RLA + A+ LHGDI QS RERT+ + G +
Sbjct: 240 LETEENIDA-SIVFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVID 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDV ARGLD+ + + +Y++P E+++HR GRTGRAG+ G AIL+ Q R +
Sbjct: 299 VLVATDVVARGLDIQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRML 358
Query: 456 KSIERDVGCRF--TQLP 470
++IER R QLP
Sbjct: 359 RTIERVTKSRMEEIQLP 375
>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 619
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 226/372 (60%), Gaps = 16/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 S-------QAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P+ RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NK+LK+ + + + D I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANKHLKDATNISIA--ASHTTVDSIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 359 IERATNSRISPM 370
>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 442
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 231/383 (60%), Gaps = 10/383 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ + L + G + PIQ A + A++GRD++ +A+TG+GKTLAF IP++
Sbjct: 2 VSFAELSLTSFLADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLI 61
Query: 159 DKIIKFNEKH-GRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMR 216
++ +K K G R+P LVLAPTRELA Q+E E + AP S+ ++ VYGG PI R
Sbjct: 62 ERAVKEGWKPAGSARSPRALVLAPTRELALQIEMELRKYAPPSVTSLAVYGGVPIERHYR 121
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL V+GTPGR++D+ L+L +++VV+DEADQML GF D++ IL+ LP
Sbjct: 122 ALRQPPMIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPSQ 181
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSAT P I +L LKNP VD ++ + Y + S + +I
Sbjct: 182 RQTMLFSATFSPEILTLAESMLKNPARTAVDPGVNTPTTITHA---YYVVPSESSRVQLI 238
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
L+ G + +VF K RLA + + + + G+ SQ+QRERTL+AFR GR
Sbjct: 239 HTLLQSPESGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGR 298
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
L+ATDVAARGLDVP+V +IHYELP ++VHRTGRTGRA + G+ +LI + ++
Sbjct: 299 LRTLVATDVAARGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLILSPKEEH 358
Query: 454 QVKSIER--DVGCRFTQLPRIAV 474
+ ++ R + + LP +AV
Sbjct: 359 EYLAMVRRLRIQTKRLTLPALAV 381
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 222/360 (61%), Gaps = 13/360 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
LDI +DI+ AL G PIQ + G+D+IG+A+TGTGKT AFGIP+++++
Sbjct: 9 LDIKKDILKALKELGFEVPTPIQVQAIPHLKMGKDIIGQAQTGTGKTAAFGIPMIERV-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + L++APTREL+ QV E F + T+ +YGG PIS Q++AL
Sbjct: 67 ----NPKNKAVQILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPISTQIKALKR 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV +VGTPGR++D I R L L EV VVLDEADQML +GF ED+E IL+ P RQ+
Sbjct: 123 GVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTERQTA 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT+ I + KY+K P + +V + IS Y +EK + +++ +
Sbjct: 183 MFSATISREIERIAQKYMKQPEKI-MVAQKALTVPQ-ISQYYFEVKPHEKVEALCRIL-D 239
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K I+F +TKR D L + + Y+ +HGD+ Q+QR+R + FR+ ++L+A
Sbjct: 240 MDKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVA 299
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARG+DV +V+++++Y++P E +VHR GRTGRAGK+G A + T +Q R +K++E
Sbjct: 300 TDVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRTLKALE 359
>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
Length = 598
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 238/395 (60%), Gaps = 28/395 (7%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQ-----------DIVAALARRGISKLFPIQKAVLEPAM 134
D + DS+ E ++I+ + SQ +I+ AL G S+ PIQ A + M
Sbjct: 7 DLASSQDSAPSESIEITTAEPSQKTGFAAFGFSPEILEALEEIGYSEPSPIQAAAIPELM 66
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194
GRD++G+A+TGTGKT AF +P+L + + R P LVL PTRELA QV F
Sbjct: 67 LGRDLVGQAQTGTGKTAAFALPMLAALDETQ------RTPQVLVLTPTRELAIQVADSFK 120
Query: 195 ESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
A P L + VYGG+ Q+ L GV VVGTPGRV+D +++ L++S ++ +VL
Sbjct: 121 SYATKLPHLRVLPVYGGSDFRDQIHKLKRGVQVVVGTPGRVMDHMRQGTLDVSGLRSLVL 180
Query: 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGD 309
DEAD+ML +GF +DVE +L +LP+ RQ ++FSATMP IR ++++YL +P +T+ G
Sbjct: 181 DEADEMLRMGFIDDVEWVLSQLPEKRQVVLFSATMPSEIRRISHQYLNSPAEITIKTKGS 240
Query: 310 SDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSY 368
+ I I + K + +++ K G I+F +TK +A A+ AK Y
Sbjct: 241 DSSR----IQQRFITVNGPMKLEALSRVLEAETKEG-VIIFARTKAITVTVAEALEAKGY 295
Query: 369 NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFV 428
L+GD++QSQRERT+ ++G ++L+ATDVAARGLDV + L+I+Y++P SE +V
Sbjct: 296 GVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAARGLDVDRISLVINYDIPFDSEAYV 355
Query: 429 HRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVG 463
HR GRTGRAG+ G+AIL T ++ R + +ER VG
Sbjct: 356 HRIGRTGRAGRTGNAILFVTPRERRFITGLERAVG 390
>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
SK11]
gi|385837379|ref|YP_005875009.1| cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|414073651|ref|YP_006998868.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
cremoris SK11]
gi|358748607|gb|AEU39586.1| Cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|413973571|gb|AFW91035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 551
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 230/367 (62%), Gaps = 16/367 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+NRQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 ENRQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPQLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
++L+ATDVAARGLDV V + +Y++ E++VHR GRTGRAGK G ++ + +
Sbjct: 290 IDVLVATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMG 349
Query: 454 QVKSIER 460
+++IE+
Sbjct: 350 YLRAIEK 356
>gi|374995988|ref|YP_004971487.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214354|gb|AET68972.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 536
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 234/381 (61%), Gaps = 25/381 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ I+ AL+ G + PIQ+ + A+ G D+IG+A+TGTGKT AFGIP+ + +
Sbjct: 12 IPLSKPILQALSEMGFEEPSPIQRQAIPVALDGADLIGQAQTGTGKTAAFGIPVTEMV-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG 221
+ R + L++ PTRELA QV +E + + + +YGG PI Q+RAL G
Sbjct: 70 ----NSRFQAVQALIVTPTRELAIQVSEEISKLGKYRHVKPLPIYGGQPIDRQIRALRMG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSM 280
VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E +L +P + RQ +
Sbjct: 126 YQVVVGTPGRLLDHLNRGTLRLQHVKVVVLDEADEMLDMGFVDDIESLLREVPAEGRQVL 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSIIG 335
+FSATMPP IR L Y+ +P +V + D +++ I YE K +G
Sbjct: 186 LFSATMPPGIRKLAQTYMNSPRSVTVSRDE-------LTVPLIEQVFYETRESIKVDALG 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 239 RII-DMEDIGQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKS 297
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+ATDVAARGLD+ NV +I++++P ++VHR GRTGR G+KG AI + + ++ RQ
Sbjct: 298 ELLVATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQ 357
Query: 455 VKSIERDVGCRF--TQLPRIA 473
++ IE + R +LP +A
Sbjct: 358 LRLIENLIKTRIRRQELPSMA 378
>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853567|ref|YP_006355811.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 551
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 230/367 (62%), Gaps = 16/367 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+NRQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 ENRQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
++L+ATDVAARGLDV V + +Y++ E++VHR GRTGRAGK G ++ + +
Sbjct: 290 IDVLVATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMG 349
Query: 454 QVKSIER 460
+++IE+
Sbjct: 350 YLRAIEK 356
>gi|389795816|ref|ZP_10198925.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
gi|388430147|gb|EIL87341.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
Length = 622
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 232/381 (60%), Gaps = 13/381 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D++ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I
Sbjct: 18 LALHPDVLRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRI-- 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
N + G+ P LVLAPTRELA QV + F A P + +YGG Q+ AL
Sbjct: 76 -NPRAGK---PQALVLAPTRELAIQVAEAFQRYAAHIPGFQVLPIYGGQSYGPQLHALKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++F+VLDEAD+ML +GF +DVE +L P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELRFLVLDEADEMLRMGFIDDVEKVLHATPPERQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + ++LK+P+ V ++ S A+ Y + M++ ++ I E
Sbjct: 192 LFSATMPAVIRKIAQRHLKDPVEV-IIKSSTTTAANIHQRYWFVSGMHKLDALTR--ILE 248
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK+ + LA + A+ ++GDI+Q+QRER + +DG+ +IL+A
Sbjct: 249 AEPFDAMIIFARTKQATEELAGKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVA 308
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + ++++++P +E++VHR GRTGRAG+ G AIL + ++ + +IE
Sbjct: 309 TDVAARGLDVDRISHVLNFDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLGAIE 368
Query: 460 RDVGCRFTQLPRIAVEGGGDM 480
R Q+ +VE D+
Sbjct: 369 RATRQPIEQMQLPSVEVVNDV 389
>gi|410456811|ref|ZP_11310665.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
gi|409927363|gb|EKN64500.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
Length = 450
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 166/455 (36%), Positives = 250/455 (54%), Gaps = 22/455 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D L IS+ +V L G++K PIQ+ + M G D+I +A+TGTGKT AF +PIL+
Sbjct: 3 DFLSLGISETVVNQLRGYGVAKPTPIQEQAIPFVMNGNDIIAQAQTGTGKTFAFILPILE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMR 216
KI K + H + L++ PTRELA Q+ E + P + + YGG + Q++
Sbjct: 63 KIDK-DAAHIQ-----ALIVTPTRELALQITAEIEKLIADLPGVAVLAAYGGQDVDKQLK 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I+R + LSE+ F+VLDEADQML +GF +VE I+ P
Sbjct: 117 KLKRNPQIVVGTPGRLLDHIRRETVRLSEISFLVLDEADQMLHIGFLGEVEDIIRETPVT 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMPP IR L K++++P + + + Q A+ + +I T+ K +
Sbjct: 177 RQTMLFSATMPPEIRKLAAKHMRDPEYIQI--EKTQGPAENVKQMAIHTTDRAKQETLID 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI H + ++F +TKR +L A+ A + + LHGD+SQ++RE+ + FRD
Sbjct: 235 LIETH-RPFLAVIFCRTKRRVSKLYDALKAHGFPSDELHGDLSQAKREQVMKRFRDAEIQ 293
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV V + +Y++P SE+++HR GRTGRAG G AI +Y + +
Sbjct: 294 LLVATDVAARGLDVEGVTHVFNYDIPEDSESYIHRIGRTGRAGMTGLAITLYAAKDKSAL 353
Query: 456 KSIERDVGCRFTQL----PRIAVEGGGDM--YNDMGGRSGYGSMRDRQYADTGFDRSSRM 509
+ IE+D+ + P E D G R++Q D +R+
Sbjct: 354 ELIEKDLKITIQKQNLVDPNKEKETSRDARKVRPQGQNENRSQGREKQGRD---NRNRSK 410
Query: 510 GDSGFGRSGGYRSPGSGRYGGNNSSYSGQGGGSSS 544
D R G ++ GR GN + SG+ ++
Sbjct: 411 TDPRDERKGNFQPKQQGRQSGNQTIKSGRNSSRAT 445
>gi|418245162|ref|ZP_12871569.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
gi|354510570|gb|EHE83492.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
Length = 732
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 240/398 (60%), Gaps = 13/398 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + ++ A+ + G PIQ + M+G+D++G A+TGTGKT AF +PIL +I K
Sbjct: 107 LGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSRIDK 166
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRALDY 220
R+P LVLAPTRELA QV F A L+ + +YGG Q+ L
Sbjct: 167 ------SVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR+ID +++ +L++S ++F+VLDEAD+ML++GF EDVE ILE P +Q
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L+ +YL NP ++ S+ + I+ + + K + +++ E
Sbjct: 281 LFSATMPNGIRRLSKQYLNNP--AEITVKSETRTNTNITQRFLNVAHRNKMDALTRIL-E 337
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+ +DGR +IL+A
Sbjct: 338 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + ++++++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 460 RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
R ++ V+ D S S+ D+Q
Sbjct: 458 RATNAPLHEMELPTVDQVNDFRKVKFADSITKSLEDKQ 495
>gi|379726995|ref|YP_005319180.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
gi|376317898|dbj|BAL61685.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
Length = 502
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 229/374 (61%), Gaps = 12/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L +S ++ A+ R G + PIQ + A++G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N+K LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKIDTKNQKLQ------GLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL VVGTPGR++D + R L L ++ +VLDEAD+ML++GF ED+E I+ ++P+N
Sbjct: 115 ALKERPQIVVGTPGRLLDHLNRRTLKLEAIETLVLDEADEMLNMGFLEDIEKIISQVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+++ K++KNP V + + + AD I Y + + YEK I+ +
Sbjct: 175 RQTLLFSATMPTAIKNIGIKFMKNPDHVKI--KAKEMTADLIDQYYVRSKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + + Y E +HGD+SQ +R L AF++G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + +
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL 351
Query: 456 KSIERDVGCRFTQL 469
IE R + L
Sbjct: 352 HVIEDLTKKRMSTL 365
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/369 (41%), Positives = 224/369 (60%), Gaps = 16/369 (4%)
Query: 99 LDISK---LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K L IS+ I A+A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+ I N R+ +VL PTRELA QV E + A + T+ +YGG PI
Sbjct: 61 PILETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV V+GTPGR ID I R L + V+ ++LDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P+ RQ+ FSATMP I LT +Y K+P + +V + Y I T K
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV--RKELTVSNTKQYYIETRSSNKLE 232
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +L+ + +VF TKR AD L + A+ Y + LHGD+ Q+QR+ + FR+
Sbjct: 233 VLCRLVDVY-DPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRN 291
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDVAARG+DV +V+ + +Y+LP E +VHR GRTGRAG++G + ++
Sbjct: 292 GTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKE 351
Query: 452 ARQVKSIER 460
R++K IER
Sbjct: 352 MRKMKDIER 360
>gi|19552380|ref|NP_600382.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|385143290|emb|CCH24329.1| putative helicase [Corynebacterium glutamicum K051]
Length = 732
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 240/398 (60%), Gaps = 13/398 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + ++ A+ + G PIQ + M+G+D++G A+TGTGKT AF +PIL +I K
Sbjct: 107 LGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILARIDK 166
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRALDY 220
R+P LVLAPTRELA QV F A L+ + +YGG Q+ L
Sbjct: 167 ------SVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR+ID +++ +L++S ++F+VLDEAD+ML++GF EDVE ILE P +Q
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L+ +YL NP ++ S+ + I+ + + K + +++ E
Sbjct: 281 LFSATMPNGIRRLSKQYLNNP--AEITVKSETRTNTNITQRFLNVAHRNKMDALTRIL-E 337
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+ +DGR +IL+A
Sbjct: 338 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + ++++++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 460 RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
R ++ V+ D S S+ D+Q
Sbjct: 458 RATNAPLHEMELPTVDQVNDFRKVKFADSITKSLEDKQ 495
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 231/382 (60%), Gaps = 13/382 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + G+ + LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISTLCD----EGKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGRV+D I R L L + F+VLDEAD+ML++GF ED+E I+ P
Sbjct: 118 IKDIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTP 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAPIKKLALNYMKKD--VEHIAILKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
N L+ATDVAARG+DV N+ +I+Y++P +E++VHR GRTGRA K+G+A + T ++
Sbjct: 295 TLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354
Query: 453 RQVKSIERDVGCRFT--QLPRI 472
++ IER + + T +LP +
Sbjct: 355 SSIRQIERIIKSKITKKELPTL 376
>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 481
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 223/362 (61%), Gaps = 12/362 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S ++ AL G PIQ+ + P + G DMIG+A+TG+GKT AFG+P+++ +
Sbjct: 5 ADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEYV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ R+ LVL PTREL QV + + +D + V+GG PI Q L
Sbjct: 65 DPSD------RDVQALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G VVGT GRV DLI R++L L +FVVLDEAD+ML +GF EDVE IL P +RQ+
Sbjct: 119 AGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSATMPP IR L+ +YL NP+ V + + D + +S+ S +KP ++G ++
Sbjct: 179 ALFSATMPPEIRKLSERYLYNPVHVKVRAAT--LTVDTVEQFSLEMSQRDKPDMLGTVL- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E K + IVF +TK D+L + + N + LHGD+SQ QR+ + +F+ GR IL+
Sbjct: 236 ESEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ +V ++++++P + + +VHR GRTGR G+ G AI Y +Q R +++I
Sbjct: 296 ATDVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAI 355
Query: 459 ER 460
ER
Sbjct: 356 ER 357
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 221/366 (60%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S++I A++ G ++ PIQ + ++G D+IG+A+TGTGKT AFGIPI+
Sbjct: 44 LKFEDIKLSEEIQKAVSDMGFEEMSPIQSQAIPKLLEGIDIIGQAQTGTGKTAAFGIPII 103
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQM 215
+K +G+ R+ +VL PTREL+ QV +E A + + +YGG PI Q+
Sbjct: 104 EKC------NGKDRSLQAMVLCPTRELSIQVAEEIRRLAKYKRDIFVLPIYGGQPIDRQI 157
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV VVGTPGR+ID I+R L L ++ +VLDEAD+M +GF +D+E+I+ +P+
Sbjct: 158 KALKKGVQIVVGTPGRIIDHIRRKTLKLGSIRMLVLDEADEMFDMGFRDDIELIVNHMPE 217
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++ FSATMP I +Y NP T+ +V + + Y + K I+
Sbjct: 218 ERQTIFFSATMPKEIVDFAKRYQTNPKTIKVV--HKELTVPRVEQYYFELKEHMKTEILS 275
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+LI + IVF TK+ D L + + Y + LHGD+ QSQR+R +S FR G
Sbjct: 276 RLIDIY-NPKLSIVFCNTKKKVDELTIELQGRGYFVDGLHGDLKQSQRDRVMSKFRTGNI 334
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV +VD++ +Y++P E +VHR GRT RAG++G A+ + +
Sbjct: 335 DILVATDVAARGLDVDDVDIVFNYDIPQDEEYYVHRIGRTARAGREGIALSFVVGRDRHR 394
Query: 455 VKSIER 460
+K IER
Sbjct: 395 IKDIER 400
>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
Length = 463
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/446 (36%), Positives = 244/446 (54%), Gaps = 17/446 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D L IS+ + L GI K PIQ+ + M+GRD+I +A+TGTGKT AF +PIL+
Sbjct: 3 DFLTLGISKKLTNILLSHGIGKPTPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPILE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMR 216
K+ + L++ PTRELA Q+ E + L+ + VYGG + Q+
Sbjct: 63 KL------DPDAVHIQALIVTPTRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQLN 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L V VVGTPGR++D IKR ++LS+ F+VLDEADQML +GF ++VE I++ P
Sbjct: 117 KLKKKVQIVVGTPGRLLDHIKRKTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKETPGK 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSAT+P IR+L K++K P + + + Q A + +I T K + + Q
Sbjct: 177 RQTMLFSATIPAEIRNLARKHMKEPEYMQI--EKTQGPAQSVKQIAIHTIDRAKQATLMQ 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI H + ++F +TKR +L + + + C+ LHGD+SQS+RE+ + FRD
Sbjct: 235 LIQTH-RPYLAVIFCRTKRRVSKLNDVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQ 293
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV V + +Y++P E++VHR GRTGRAG KG AI Y+ +
Sbjct: 294 LLVATDVAARGLDVEGVTHVFNYDIPLDPESYVHRIGRTGRAGMKGMAITFYSSADKPLL 353
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFG 515
++IE+ + ++ G S S + A +G ++ D+
Sbjct: 354 EAIEKGLNITISK----QNLGNSQERQKPSRSSEKNSQVQKIPASSGRKKNDNREDADRK 409
Query: 516 RSGGYRSPGSGRYGGNNSSYSGQGGG 541
++ G SP GR G +S G
Sbjct: 410 KTEGKTSPAKGRKGQRKNSKPLNSAG 435
>gi|384418608|ref|YP_005627968.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353461521|gb|AEQ95800.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 650
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 226/366 (61%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 25 LLFADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 84
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 85 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 138
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 139 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 198
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P+ V + + A Y +++ ++
Sbjct: 199 KRQVALFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTS-ASIRQRYWWVNGLHKLDALTR 257
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 258 ILEVEPFDG--MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKL 315
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 316 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGM 375
Query: 455 VKSIER 460
++SIER
Sbjct: 376 LRSIER 381
>gi|385679095|ref|ZP_10053023.1| ATP-dependent RNA helicase [Amycolatopsis sp. ATCC 39116]
Length = 538
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 229/379 (60%), Gaps = 13/379 (3%)
Query: 75 IAWQHAQSAVDD----YVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+A +H+++ V D + D + ++L + +IV ALA GI F IQ L
Sbjct: 1 MALEHSETGVPDTDTSHPLQADHVEPATPTFAELGVRPEIVRALAEAGIEHTFAIQALTL 60
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
A+ G D+IG+ARTG GKTL FG+P+L +++ G G P LV+ PTREL QV
Sbjct: 61 PLALAGDDLIGQARTGMGKTLGFGVPLLQRVVS----PGDG-TPQALVVVPTRELCLQVT 115
Query: 191 KEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
++ ++ L+ T+ +YGG P Q+ AL GVD VVGTPGR++DL ++ AL L +V+
Sbjct: 116 RDLTDAGKHLNVRTLAIYGGRPYEQQISALRKGVDVVVGTPGRLLDLAEQKALVLGKVRA 175
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+VLDEAD+ML +GF D+E IL +P RQ+M+FSATMP I L +L P V
Sbjct: 176 LVLDEADEMLDLGFLPDIERILGMVPDQRQTMLFSATMPDPIIKLARTFLNRPTHVRAEE 235
Query: 309 DSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KS 367
+ + + + ++ +KP +I +++ + G ++FT+TKR A ++A +A +
Sbjct: 236 NDSSAVHERTTQFAYRAHSLDKPELIARVLQAKDR-GLTMIFTRTKRTAQKVADDLAERG 294
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETF 427
+ +HGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV +V +I+Y+ P T+
Sbjct: 295 FAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVTDVTHVINYQTPEDESTY 354
Query: 428 VHRTGRTGRAGKKGSAILI 446
VHR GRTGRAGK G AI +
Sbjct: 355 VHRIGRTGRAGKTGVAITL 373
>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
Length = 594
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 231/378 (61%), Gaps = 18/378 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +SQ+++ A+ G + PIQ + + G+D +G+A+TGTGKT AFG+PIL+KI
Sbjct: 6 TELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEKI 65
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRAL 218
G++ LVL PTRELA QV +E + A + + +YGG PI Q+RAL
Sbjct: 66 -------ASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRAL 118
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID ++R L L+E + VVLDEAD+ML +GF ED+E+ILE+ P + Q
Sbjct: 119 AKGAQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQ 178
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSIIGQL 337
++FSATMP IR L+ ++L+ P +++ + + L I Y+K + ++
Sbjct: 179 RVLFSATMPQPIRELSKRFLREP---EMLTIAHKMLTVPAIEQVYYEVRPYQKMDALCRV 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K +VF TKR D + H + Y + LHGD++Q+QR+R +S FR I
Sbjct: 236 LDSQG-FRKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEI 294
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARG+DV +VD +I+Y++P+ E +VHR GRTGRAG++G A T ++ +++
Sbjct: 295 LVATDVAARGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQYKIR 354
Query: 457 SIERDVGCRFT--QLPRI 472
I R R QLP +
Sbjct: 355 EIIRYTKARIQPGQLPTL 372
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 225/361 (62%), Gaps = 21/361 (5%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L S L IS +I+ A+ G ++ IQ + + GRD+IG+A+TGTGKT +FGI
Sbjct: 2 EQELTFSDLGISSEILKAVEDMGYTQPSTIQSQSIPLLLDGRDVIGQAQTGTGKTASFGI 61
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PI+D++ K P L+L PTRELA QVE E + + + + C+YGG I
Sbjct: 62 PIIDQVDPTINK------PQALILCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGESID 115
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV VVGTPGR++D ++R LNLS++ +VLDEAD+ML +GF +D+E IL
Sbjct: 116 RQIKSLKRGVQIVVGTPGRIMDHMQRRTLNLSQISIIVLDEADEMLDMGFRDDIETILSS 175
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KP 331
+P+ RQ++ FSATMP I LT KY NP V + L +++ +I+ + YE +P
Sbjct: 176 MPEERQTVFFSATMPKPILDLTRKYQNNPEIVKV-------LRKELTVENISQAYYEVRP 228
Query: 332 SIIGQLIT---EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
S+ +L+ E + +VF TKR D + ++ +K E LHGD+SQ+QR + ++
Sbjct: 229 SLRIELMVRLMELNQFKLSVVFCNTKRSTDEVTESLISKGIMAEALHGDLSQAQRTKVMN 288
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G ++L+ATDVAARG+DV +V+ + +Y+LP E +VHR GRTGRAGK G A+
Sbjct: 289 KFRKGTCSVLVATDVAARGIDVDDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGMALSFV 348
Query: 448 T 448
T
Sbjct: 349 T 349
>gi|399888651|ref|ZP_10774528.1| RNA helicase [Clostridium arbusti SL206]
Length = 523
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/398 (40%), Positives = 237/398 (59%), Gaps = 32/398 (8%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ + ++L++ ++ A+ G IQ A + MQG D+IG+A+TGTGKT AFG P
Sbjct: 2 KNIKFTELELKDTVLKAIDDMGFENPSEIQSASIPVIMQGFDIIGQAQTGTGKTCAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF-----HESAPSLDTICVYGGTPI 211
I+ K+ + ++ L+L PTRELA Q+ +E H+ A SL +YGG +
Sbjct: 62 IISKV------DTKQKSIQALILTPTRELAIQIYEELKRLSTHDKARSLP---IYGGQSM 112
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL V VVGTPGRV+D I+R L L +++++VLDEAD+ML++GF +D+E I+
Sbjct: 113 DKQISALRKDVSIVVGTPGRVLDHIRRKTLKLGDLKYLVLDEADEMLNMGFIDDIEEIIN 172
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK- 330
+ RQ+++FSATMP I+ L KYLK V L+ Q L +++ I YE
Sbjct: 173 NTNKERQTLLFSATMPRPIKKLAEKYLKKD--VKLI----QILKKSMTVSKIDQYFYEVH 226
Query: 331 -----PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
++ L TE + I+F +TK++ D L M +K YN E +HGD+ QSQR
Sbjct: 227 NNARLEALCRILDTEEPECA--IIFCKTKKNVDELVSTMGSKGYNIEGMHGDMKQSQRLS 284
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
TLS F+ G+ L ATDVAARG+DV N+ +I+YELP +E++VHR GRTGRA K G+AI
Sbjct: 285 TLSKFKHGKLTFLAATDVAARGIDVENITHVINYELPQDTESYVHRIGRTGRANKSGTAI 344
Query: 445 LIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYN 482
+ T ++ ++K IERD+ + T + AV D+ N
Sbjct: 345 SLITKKEFSKLKQIERDIKSKIT---KKAVPSVDDIIN 379
>gi|399527779|ref|ZP_10767466.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361715|gb|EJN45457.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 719
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 244/398 (61%), Gaps = 20/398 (5%)
Query: 84 VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
VD+ D S DE + + L + ++I+AA+ G PIQ A + P ++ RD++G A
Sbjct: 27 VDETDTDSDESADETVTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIA 86
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA---KQVEKEFHESAPSL 200
+TGTGKT AFG+P+L I+ +E R+ LVLAPTRELA Q ++F L
Sbjct: 87 QTGTGKTAAFGLPLL-AIVDADE-----RDVQALVLAPTRELAMQSAQAIEDFAARTARL 140
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
D + VYGG+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +
Sbjct: 141 DVVPVYGGSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRM 200
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-S 319
GFAEDVE I P +R + +FSATMP I + ++LK+P+ V + +S D I
Sbjct: 201 GFAEDVETIASSAPDDRLTALFSATMPAAIEKVAREHLKDPVKVAVSTES--STVDTIHQ 258
Query: 320 LYSIATSMYEKPSIIGQLIT--EHAKGGK-----CIVFTQTKRDADRLAHAMA-KSYNCE 371
Y++ ++ ++ L T +H K G+ IVF +T+ D + ++ ++ + +
Sbjct: 259 TYAVVPYKHKIGALSRVLATRAQHIKEGQEEADAAIVFVRTRADVEEVSLELSGRGFRAA 318
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431
+ GD++Q++RER + ++G ++L+ATDVAARGLDV + L++++++P E +VHR
Sbjct: 319 GISGDVAQTERERMVERLKNGSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRI 378
Query: 432 GRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
GRTGRAG++G A+ +T ++ +++ IE+ G ++
Sbjct: 379 GRTGRAGREGRALTFFTPREHGRLRRIEKLTGTEMEEV 416
>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
Length = 715
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/363 (42%), Positives = 225/363 (61%), Gaps = 9/363 (2%)
Query: 104 LDISQD--IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
LD+ D ++AA+ G ++ PIQ+A + + GRD++G A+TGTGKT AF +P L ++
Sbjct: 51 LDLGLDARVLAAVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRL 110
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+ + +GR P LVLAPTRELA QV F A LD + VYGG+P Q+ L
Sbjct: 111 AETTDVNGRADTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGL 170
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID ++R +L+LS++Q +VLDEAD+ML +GFAE+V+ IL P +Q
Sbjct: 171 RRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQ 230
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMPP IR ++ +YL P V + S A Y ++ ++ L
Sbjct: 231 TALFSATMPPAIRRISAQYLNAPEEVAVARQSTTS-ATIRQRYLQVGHQWKFEALSRILE 289
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
TE G I F +T+ + LA + ++ + + GDI+Q QRE+T+ + GR +IL
Sbjct: 290 TEEHDG--VIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDIL 347
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG++G A+L T ++ +K
Sbjct: 348 VATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQ 407
Query: 458 IER 460
IER
Sbjct: 408 IER 410
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/369 (41%), Positives = 224/369 (60%), Gaps = 16/369 (4%)
Query: 99 LDISK---LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K L IS+ I A+A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+ I N R+ +VL PTRELA QV E + A + T+ +YGG PI
Sbjct: 61 PILETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV V+GTPGR ID I R L + V+ ++LDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P+ RQ+ FSATMP I LT +Y K+P + +V + Y I T K
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV--RKELTVSNTKQYYIETRSSNKLE 232
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +L+ + +VF TKR AD L + A+ Y + LHGD+ Q+QR+ + FR+
Sbjct: 233 VLCRLVDVY-DPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRN 291
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G +IL+ATDVAARG+DV +V+ + +Y+LP E +VHR GRTGRAG++G + ++
Sbjct: 292 GTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKE 351
Query: 452 ARQVKSIER 460
R++K IER
Sbjct: 352 MRKMKDIER 360
>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
Length = 502
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 229/374 (61%), Gaps = 12/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L +S ++ A+ R G + PIQ + A++G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N+K LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKIDTKNQKLQ------GLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL VVGTPGR++D + R L L ++ +VLDEAD+ML++GF ED+E I+ ++P+N
Sbjct: 115 ALKERPQIVVGTPGRLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+++ K++KNP V + + + AD I Y + + YEK I+ +
Sbjct: 175 RQTLLFSATMPTAIKNIGIKFMKNPDHVKI--KAKEMTADLIDQYYVRSKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + + Y E +HGD+SQ +R L AF++G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + +
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL 351
Query: 456 KSIERDVGCRFTQL 469
IE R + L
Sbjct: 352 HVIEDLTKKRMSTL 365
>gi|383826631|ref|ZP_09981754.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
gi|383332437|gb|EID10918.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
Length = 566
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 230/375 (61%), Gaps = 15/375 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L I ++ A+A G IQ A + M G D++G A+TGTGKT AF IPIL +I
Sbjct: 18 LQIHPSVLRAIAEVGYESPSAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSRIDT 77
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDY 220
+ LVLAPTRELA QV + F P L + +YGG S Q+ L
Sbjct: 78 TSNATQ------ALVLAPTRELALQVSEAFSRYGAHLPRLTALPIYGGASYSVQLAGLRR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAEDVE IL P+ +Q
Sbjct: 132 GAQVVVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMPP IR++T KYL PL + + ++ A+ IS I + K + +++ E
Sbjct: 192 LFSATMPPAIRAITAKYLHEPLEITV--EAKTTTAENISQRYIQVAGPRKMDALTRVL-E 248
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
IVF +TK+ + +A + A+ ++ ++GDI Q+QRERT++A +DG +IL+A
Sbjct: 249 VEPFEAMIVFVRTKQATEEVAEKLCARGFSAAAINGDIPQTQRERTIAALKDGGLDILVA 308
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV V +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++ +K+IE
Sbjct: 309 TDVAARGLDVDRVSHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 368
Query: 460 RDVGCRF--TQLPRI 472
+ R +LP +
Sbjct: 369 KATRQRLIEAELPTV 383
>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 440
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 225/378 (59%), Gaps = 4/378 (1%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ ++L ++ +IV AL GI ++F IQ+ L A+ GRD+IG+ARTG GKT AFG+
Sbjct: 3 DQQPTFAELGVAAEIVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGV 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISH 213
P+LD++ P LV+ PTRELA QV ++ +A + +YGG P
Sbjct: 63 PLLDRVFDDAAIEELDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDE 122
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL+ GVD VVGTPGR++DL +R L L V +VLDEAD+ML +GF D++ + L
Sbjct: 123 QLNALEAGVDVVVGTPGRLLDLHERGDLVLDRVAILVLDEADEMLDLGFLPDIQRLWGAL 182
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
Q Q+M+FSATMP I L + + P+ + +L D + +KP +
Sbjct: 183 SQPLQTMLFSATMPAPILKLAREMMNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEV 242
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G+ I+FT+TKR A +A +A + + +HGD+ QS RER+L AFR G
Sbjct: 243 VARVLQADGR-GRTIIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKG 301
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
IL+ATDVAARG+DV +V +I+Y+ P+ T+VHR GRTGRAG+ G+A+ + +
Sbjct: 302 DVEILVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGTAVTLVGFDET 361
Query: 453 RQVKSIERDVGCRFTQLP 470
+ K I ++G + P
Sbjct: 362 GKWKIISDELGLDMPEPP 379
>gi|381395882|ref|ZP_09921576.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328447|dbj|GAB56709.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 584
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 15/371 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ ++ A+ + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPSALLQAVEKVGYEKPSPIQAKSIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-D 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
+E + + LVLAPTRELA QV + F A + + VYGG+ +Q+R L
Sbjct: 71 PDEAYTQ-----LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPVYGGSSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L L +++F+VLDEAD+ML +GF +DVE+IL P RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLKLDKLRFLVLDEADEMLRMGFIDDVELILSHAPSTRQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-T 339
+FSATMP I+ ++ KYL NP V + +S A I + + + K + +++
Sbjct: 186 LFSATMPDQIKKISQKYLNNPKHVKI--ESKVSTASTIRQRYVQVAGHHKLETLTRILEI 243
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E +G IVF +TK LA + A+ Y+ E L+GDI+Q+ RERT+ + G+ +IL+
Sbjct: 244 EEFEG--VIVFVRTKTATLELAEKLSARGYDVEALNGDIAQAARERTVERLKQGKIDILV 301
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV V +I+Y++P+ +E++VHR GRTGRAG+KG AIL + ++ R + +I
Sbjct: 302 ATDVAARGLDVERVSHVINYDVPHDTESYVHRVGRTGRAGRKGDAILFISHREKRMLFAI 361
Query: 459 ERDVGCRFTQL 469
ER T +
Sbjct: 362 ERATKQEITMM 372
>gi|405979651|ref|ZP_11037994.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392067|gb|EJZ87128.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 596
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 216/347 (62%), Gaps = 9/347 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+ +I +
Sbjct: 80 VTDPIVDALEDKGITHPFPIQALTLPPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPD 139
Query: 166 EK-HGRGRNP---LCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E+ + NP L++ PTREL KQV + E+A L T + +YGG Q+ AL
Sbjct: 140 EEGYDELLNPNMPQALIILPTRELTKQVATDLREAAAYLSTRIVEIYGGVAFEPQIEALK 199
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR+IDL+++ L+L+ + VVLDEAD+ML +GF DVE +L R P NR +
Sbjct: 200 KGADIVVGTPGRLIDLLRKGVLHLNGAETVVLDEADEMLDLGFLPDVETLLARTPANRHT 259
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + +L K+++ P + DQ + + + +K ++ +++
Sbjct: 260 MLFSATMPGPVVALARKFMEQPTHIRAQDPEDQNQTVNSVKQVIYRVHAMDKVEVVARIL 319
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ I+F +TKR A RL + + + LHGD+ Q RE+ L AFR+G+ ++L
Sbjct: 320 QSEGR-GRSIIFCRTKRTAARLGEDLTERGFAVGSLHGDLGQGAREQALRAFRNGKVDVL 378
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG G A+
Sbjct: 379 VATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGHSGVAV 425
>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 618
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 223/347 (64%), Gaps = 12/347 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +I AL GI FPIQ+ L A+ G+D+IG+ARTGTGKT AFGIP L I K
Sbjct: 13 LGVIPEIADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQLIGK 72
Query: 164 F--NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
N K RG L+LAPTRELA QV ++ +A L T VYGG Q+ AL
Sbjct: 73 PRKNRKKPRG-----LILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALK 127
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VVGTPGR++DL+ + L+LS++ +VLDEAD+ML +GF D+E I++ LP+ RQ+
Sbjct: 128 NGVDVVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQT 187
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP I +L+ +YL P + + + + + + + T +K I+ +++
Sbjct: 188 MLFSATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRMDKIEILARVL 247
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ + +VF +TKR D +A+ + + + +HGD+SQSQRE+ L AFR+G+ N+L
Sbjct: 248 -QSTELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVL 306
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ATDVAARG+DV +V +I+Y+LP +T++HR GRTGRAG+ G AI
Sbjct: 307 VATDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAI 353
>gi|430746222|ref|YP_007205351.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430017942|gb|AGA29656.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 415
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/405 (38%), Positives = 236/405 (58%), Gaps = 22/405 (5%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S ++ AL + PIQ ++ A++GRD+IG+A+TGTGKT AFGIP+++ +
Sbjct: 18 LSAPLLRALKKVRYHTPSPIQAELIPEALEGRDVIGQAKTGTGKTAAFGIPLIEML---- 73
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT-IC-VYGGTPISHQMRALDYGVD 223
RG+ P ++LAPTREL +Q+ E A D IC +YGG PI Q+RAL GVD
Sbjct: 74 --EARGKGPQGIILAPTRELVQQIVAELQTLADGQDVVICGIYGGEPIDKQLRALQRGVD 131
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+VGTPGRV+D I+R L L ++ VVLDEAD+ML +GF D+E IL ++P Q+++ S
Sbjct: 132 LIVGTPGRVLDHIERRTLYLGDIYHVVLDEADRMLDIGFRPDIERILRKVPNPHQTLLLS 191
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT+ P IR L +Y+ P+ ++L D+ D I Y + K ++ L+ + +
Sbjct: 192 ATISPDIRKLAQRYMFEPVELNL--SRDEPSVDSIKQYYVTVEHERKFDLLVHLL-QRDR 248
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
+CIVFT+TKR A+RLA + + +HGD++Q+ R R + FR+G +L+ATDV
Sbjct: 249 PRQCIVFTRTKRGAERLADRLRGRIPGVATIHGDLAQTVRNRVMLGFRNGTIPVLVATDV 308
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
RG+DV ++ +I++++P+ +E +VHR GRTGR GK G A + Q + +IE +
Sbjct: 309 VGRGIDVNDISHVINFDVPDDAENYVHRIGRTGRMGKDGLAYMFVCPDQGEPLTAIENLI 368
Query: 463 GCRFTQLPRIAVEGG----------GDMYNDMGGRSGYGSMRDRQ 497
LP E ++Y+ RS YG++ R+
Sbjct: 369 NKTIPTLPLDGFEAYRRQPKRETAFKEIYSTAATRSPYGAVSSRE 413
>gi|339494494|ref|YP_004714787.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338801866|gb|AEJ05698.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 553
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 228/363 (62%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + Q +A I + +K + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVAR-IEQAHLMVHADQKIQAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 229/369 (62%), Gaps = 14/369 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S+ I+ A+ G + PIQ+ + + GRD+I +A+TGTGKT AF +PI+ ++
Sbjct: 5 AALGLSEPILRAIEAVGFEEPTPIQRQAIPLMLDGRDVIAQAQTGTGKTAAFALPIIQRL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
K ++K P LVLAPTRELA QV + F+ D + VYGG PI Q+RAL
Sbjct: 65 -KPDQK-----GPQALVLAPTRELAVQVAQAFYSLGKFQDIRVLAVYGGQPIERQLRALR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+ VD +VGTPGR++D ++R L+ ++ VVLDEAD+ML +GF ED+E IL+++P RQ
Sbjct: 119 FPVDIIVGTPGRIMDHLRRETLSFEDISMVVLDEADEMLDMGFVEDIEWILDQVPAQRQI 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDS-DQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSAT+P I L+ +YL+ P+ + + + L + + + + E + I L
Sbjct: 179 ALFSATIPNRIVDLSRRYLQKPVRIAIEPERVTVPLTEQVYYQVVPRAKVEALTRILDLT 238
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ I+F +TKR+ D L + + Y E LHGD+SQ QR+R + FR G+ +L
Sbjct: 239 APSS----AIIFCRTKREVDDLTQKLESLGYPAEALHGDLSQVQRDRVMGRFRSGQTELL 294
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVA+RGLD+ V +I+Y++P E++VHR GRTGRAG+ G AI + T +++R +++
Sbjct: 295 IATDVASRGLDIEQVSHVINYDIPLDPESYVHRIGRTGRAGRPGVAITLVTPRESRLLRA 354
Query: 458 IERDVGCRF 466
IER G R
Sbjct: 355 IERATGGRI 363
>gi|404422771|ref|ZP_11004447.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403655804|gb|EJZ10637.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 576
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 234/388 (60%), Gaps = 15/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S D + L I ++ A+ G IQ A + + G D++G A+TGTGKT
Sbjct: 5 DPDSGDTAPTFADLQIDPAVLKAVTDVGYESPSAIQAATIPAMLAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF IPIL KI R LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKI------DTSSRKTQALVLAPTRELALQVAEAFGRYGAHLPEINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G + Q+ L G VVGTPGRVID ++R L+LS + ++VLDEAD+ML++GFAE+VE
Sbjct: 119 GASYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSNLDYLVLDEADEMLTMGFAEEVE 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR +T KYL +P+ V + + A+ I+ I +
Sbjct: 179 RILADTPEYKQVALFSATMPPAIRKITTKYLHDPVEVTV--KAKTATAENITQRFIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E +G IVF +TK+ + +A + ++ + ++GDI+Q+QRERT+
Sbjct: 237 ARKLDALTRVL-EVEEGDAMIVFVRTKQATEEVAERLRSRGFAAAAINGDINQAQRERTI 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+A +DG +ILIATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G A+L
Sbjct: 296 TALKDGTIDILIATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGHALLF 355
Query: 447 YTDQQARQVKSIERDVGCRF--TQLPRI 472
T ++ +KSIE+ + +LP +
Sbjct: 356 VTPRERHLLKSIEKHTRSKVIEAELPSV 383
>gi|336320086|ref|YP_004600054.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336103667|gb|AEI11486.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 581
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 222/352 (63%), Gaps = 10/352 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ D+ +IV ALA GIS FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L +I
Sbjct: 43 ADFDVRPEIVQALADAGISHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHRI 102
Query: 162 IKFNEK-HGRGR---NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM 215
+ +E+ + + R P LV+ PTRELA QV + ++ S+ + VYGG Q+
Sbjct: 103 VARDEEGYDQLRAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEPQI 162
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GVD VVGTPGR+ID++K+ L+LS V+ VVLDEAD+ML +GF DVE +L P
Sbjct: 163 DALNAGVDVVVGTPGRMIDMLKQRHLDLSHVRTVVLDEADEMLDLGFLPDVETLLAATPA 222
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD--QKLADGISLYSIATSMYEKPSI 333
+R +M+FSATMP + ++ +Y+ P + D ++ I + +K +
Sbjct: 223 SRHTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGRQTVKNIKQVAYRAHALDKVEL 282
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G IVF +TKR A ++A + + + LHGD+ Q RE+ L AFR G
Sbjct: 283 LARILQAQGR-GLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFRHG 341
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ ++L+ATDVAARG+DV +V +I+Y+ P +T++HRTGRTGRAG KG+A+
Sbjct: 342 KVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYLHRTGRTGRAGNKGTAV 393
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 227/379 (59%), Gaps = 13/379 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGSDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F G+ CL+L PTRELA Q+ E + + VYGG I Q++
Sbjct: 61 NS---FGSNDGK---VFCLILTPTRELAIQINDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+ML +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVKYLVIDEADEMLDMGFIDDIKEIINHTNEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+MMFSATMP I+SL KY+K+ + ++ Y + S+
Sbjct: 175 RQTMMFSATMPDEIKSLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCK- 233
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
I + + I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G +
Sbjct: 234 -ILDVDEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILD 292
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
L+ATDVAARG+D+ NV +I+Y LP E++VHR GRTGRA + G A + T ++ +
Sbjct: 293 FLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPAL 352
Query: 456 KSIERDVGCRF--TQLPRI 472
K IE+ C+ +LP +
Sbjct: 353 KRIEKATRCKIKRKELPTV 371
>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 585
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 231/377 (61%), Gaps = 13/377 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L + L + +++ AL G IQ A + +QGRD++G A+TGTGKT AF +P
Sbjct: 17 ETLTFADLGLDANVLKALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALP 76
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISH 213
+L ++ H +NP LVLAPTRELA QV + F + A + + VYGG
Sbjct: 77 VLSQM---ETGH---KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQ 130
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD +VGTPGR++D + + L+LSE++F+VLDEAD+ML +GFAEDVE IL
Sbjct: 131 QLSALRRGVDVIVGTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADT 190
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +Q +FSATMP IR ++ +YL +P + V A+ Y I + + ++
Sbjct: 191 PSTKQVALFSATMPAQIRRISAQYLNDPEEI-TVKTKTTTSANITQRYLIVSYQQKIDAL 249
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
L E+ +G IVFT+TK + + +A + A+ Y ++GDI+Q QRERT++ + G
Sbjct: 250 TRILEVENFEG--MIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSG 307
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +IL+ATDVAARGLDV + +++Y+LP +E++VHR GRTGRAG+ G AI T ++
Sbjct: 308 KLDILVATDVAARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPRER 367
Query: 453 RQVKSIERDVGCRFTQL 469
R + +IE+ T++
Sbjct: 368 RMLTAIEKATRQPLTEM 384
>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase [Methanoregula boonei 6A8]
gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
Length = 532
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/397 (40%), Positives = 230/397 (57%), Gaps = 34/397 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L S L +S++I A+ G + PIQ + GRD+ +A+TGTGKT AFGIP++
Sbjct: 5 LQFSDLSLSKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVTAQAQTGTGKTSAFGIPVI 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF-HESA--PSLDTICVYGGTPISHQM 215
+ I R +VL PTRELA Q+ +EF H A P + + VYGG PI Q+
Sbjct: 65 ENI------DASQRVVQVIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQL 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV V+GTPGRV+D +KR L+L V VVLDEADQML +GF +D+E+IL+R+PQ
Sbjct: 119 KALANGVHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQ 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATS 326
RQ+++FSAT+P I ++ ++ P LTV + S ++ D L S+
Sbjct: 179 KRQTLLFSATLPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDRDKLDSLCR- 237
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERT 385
+ + I+F TKR A+ LA A+ Y E LHGD+ QSQR+R
Sbjct: 238 -----------VIDVVDPQLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRV 286
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
+ FR G +ILIATDVAARG+DV +VD++I+Y++P + ++HR GRTGRAGK G AI
Sbjct: 287 MGGFRKGTIDILIATDVAARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAIT 346
Query: 446 IYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYN 482
T + +++ I++ + Q+PR + D+
Sbjct: 347 FVTSRDFTKLREIQKYIKV---QIPRKPLPTADDVVE 380
>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|397662231|ref|YP_006502931.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|394350410|gb|AFN36324.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|399115832|emb|CCG18635.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis
14/56]
Length = 442
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 230/366 (62%), Gaps = 10/366 (2%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-KFNEKH 168
I+ +++ G PIQ EP ++GRD++G A+TGTGKT AF +PIL+++I K N
Sbjct: 15 ILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILNRLIPKANYST 74
Query: 169 GRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVDAV 225
++P+ LVL PTRELA+Q+ K + + L C +YGG I+ Q + L G D V
Sbjct: 75 SPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQKQELMRGADIV 134
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
+ TPGR++D I++ +NL++V+F+VLDEAD+ML +GF D+ IL LP++RQS+++SAT
Sbjct: 135 IATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPKSRQSLLYSAT 194
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
IRSL K+L NP+ + + ++ +YS++ S +K + + ++T A
Sbjct: 195 FSENIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSES--DKNAALVYILTSRA-FN 251
Query: 346 KCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
I+F+ K L + +Y+ + LHGD SQ +R + L F+ + NIL+ATDVA
Sbjct: 252 NVIIFSNRKVTCKNLERLL-NNYDLAVQSLHGDKSQLERTKALDLFKSSKCNILVATDVA 310
Query: 404 ARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVG 463
ARGLD+ +VD +I+YELP TSE +VHR GRTGRAGKKG AI + + ++ + + IE G
Sbjct: 311 ARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSSEEGKSLSEIETLTG 370
Query: 464 CRFTQL 469
+F +L
Sbjct: 371 LKFQKL 376
>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 731
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/403 (40%), Positives = 242/403 (60%), Gaps = 22/403 (5%)
Query: 104 LDISQD--IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
LD+ D ++AA+ G + PIQ+A + + GRD++G A+TGTGKT AF +P L ++
Sbjct: 75 LDLGLDARVLAAVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSRL 134
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRAL 218
+ ++ +GR P L LAPTRELA Q+ + F A L + VYGG+P Q+ AL
Sbjct: 135 AEASDVNGRANAPQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSAL 194
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID I+R +L+LS++Q +VLDEAD+ML +GFAE+V+ IL P ++Q
Sbjct: 195 RRGAQVVVGTPGRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPASKQ 254
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMPP IR ++ +YL +P V + S A Y Y+ ++ L
Sbjct: 255 TALFSATMPPAIRRISAQYLNSPEEVAVSRQSTTS-ATIRQRYLQVGHQYKLEAMTRILE 313
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
TE +G I F +T+ + LA + ++ + + GDI+Q QRE+T+ + GR +IL
Sbjct: 314 TEDHEG--VIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVDIL 371
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +I+Y++P +E++VHR GRTGRAG++G A+L T ++ +K
Sbjct: 372 VATDVAARGLDVERISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQ 431
Query: 458 IERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYAD 500
IER Q+ +AV D+ + R R++AD
Sbjct: 432 IER---TTRQQVEEMAVPSVADV----------NAARKRRFAD 461
>gi|146282848|ref|YP_001173001.1| DEAD/DEAH box helicase [Pseudomonas stutzeri A1501]
gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
A1501]
Length = 553
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 228/363 (62%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + Q +A I + +K + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVAR-IEQAHLMVHADQKIQAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>gi|363422948|ref|ZP_09311020.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
gi|359732360|gb|EHK81377.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
Length = 626
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 227/367 (61%), Gaps = 13/367 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
L + LDI ++ AL+ G PIQ A + P ++GRD++G A+TGTGKT AF +PI
Sbjct: 14 ALTFADLDIDARVLQALSDVGYESPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPI 73
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQ 214
L +I + P LVLAPTRELA QV + F + + P L + +YGG Q
Sbjct: 74 LSRI------DTSVKRPQALVLAPTRELALQVAEAFGKYSVHIPGLSVLPIYGGQAYGVQ 127
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G +VGTPGRVID + + L++SE++F+VLDEAD+ML++GF EDVE IL P
Sbjct: 128 LSGLRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTP 187
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+Q +FSATMP IR L+ +YLK+P + + S + IS + S K +
Sbjct: 188 DTKQVALFSATMPGAIRRLSKQYLKDPQEITV--KSKTTTSANISQRWVLVSHQRKLDAL 245
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ E I+F +TK+ + LA + A+ ++ ++GDI Q+QRERT++ ++G
Sbjct: 246 TRIL-EVETFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTINQLKNGT 304
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G A+L ++
Sbjct: 305 LDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERH 364
Query: 454 QVKSIER 460
+K+IER
Sbjct: 365 LLKAIER 371
>gi|66475994|ref|XP_627813.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
gi|46229325|gb|EAK90174.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
Length = 738
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 242/396 (61%), Gaps = 29/396 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 66 IDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 125
Query: 161 IIK---FN-EKHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQ 214
++K F+ KHGR PL LVL PTRELA+QV EF + VYGG+P Q
Sbjct: 126 LLKKGKFDPNKHGR--RPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQ 183
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 184 IQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVR 243
Query: 275 -----------QNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLV-----GDSDQKLA- 315
QN+ Q ++FSAT+PPW++++ + + + +TVD+ G+ + + A
Sbjct: 244 KETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAA 303
Query: 316 -DGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ L
Sbjct: 304 RSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVL 363
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HGDI Q+QRE L AF++GR+ L+ATDVAARGL + +V ++I P +T++HR+GR
Sbjct: 364 HGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGR 423
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
TGRAGK G+AI+ + SIE+ F ++
Sbjct: 424 TGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRI 459
>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
Length = 446
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 229/374 (61%), Gaps = 5/374 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ++ +I LA RGI++ F IQ+ L A+ G+D+IG+ARTG GKT FG+P+LD++
Sbjct: 12 AELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDRV 71
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
+ P L++ PTRELA+QV + ++A L +YGG P Q++ L
Sbjct: 72 FDDADIAPLDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKLLQ 131
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQ 278
GVD V+GTPGR++DL +R L L V VVLDEAD+ML +GF +E ILE L N Q
Sbjct: 132 RGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAHQ 191
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L+ +++ P+ + ++D+ + + +K +I ++
Sbjct: 192 TMLFSATMPGAILNLSRQFMNKPVHIRAESEADEVTHETTRKVTFQAHRMDKVPVIAHIL 251
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+G + I+FT+TKR A +LA +A + ++ +HGD+ Q RE++L AFR G +IL
Sbjct: 252 QAQGRG-RSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDIL 310
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATD+AARG+DV +V +I+Y++P+ TF+HR GRTGRAG G+A+ + + + +
Sbjct: 311 VATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDELAKWRV 370
Query: 458 IERDVGCRFTQLPR 471
I ++G P+
Sbjct: 371 INDELGLDTATPPQ 384
>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase [Halothermothrix orenii H 168]
gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
168]
Length = 527
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 228/372 (61%), Gaps = 15/372 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS++I+ A+ G + PIQ + P + G+D+IG+A+TGTGKT AFGIP+L+KI
Sbjct: 7 SELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLLEKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL 218
R + P ++L PTRELA QV +E A SL T+ VYGG I Q++AL
Sbjct: 67 ------DTRNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV ++GTPGRV+D ++R LNLS + FVVLDEAD ML +GF +D++ IL+ +P +RQ
Sbjct: 121 KKGVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSIIGQL 337
++ FSAT+P I L+ +Y K + + + +KL GI Y +K ++ +L
Sbjct: 181 TLFFSATIPETILDLSKRYQKKSQFIKI---AHEKLTVPGIEQYYYEVRRSDKLKVLTRL 237
Query: 338 ITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I ++ G ++F T++ + L A+ Y + LHG +Q+QR+R + FR+G I
Sbjct: 238 IDLYSP-GLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEI 296
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARG+DV V+ + +Y++P ++ +VHR GRTGRAGK G A + +++
Sbjct: 297 LVATDVAARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLR 356
Query: 457 SIERDVGCRFTQ 468
I++ R +
Sbjct: 357 DIQKYTKTRIIK 368
>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357190|ref|ZP_12959892.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689580|gb|EHI54116.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 613
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 224/363 (61%), Gaps = 15/363 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L ++ ++ AL G + PIQ A + M G D++G+A+TGTGKT AF +P+L ++
Sbjct: 11 SELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRL 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRAL 218
N RN LVLAPTRELA QV + + + P + +YGG+ Q RAL
Sbjct: 71 EAGN------RNTQVLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYETQTRAL 124
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+DLI+R L+LS ++ +VLDEAD+ML +GF +DV+ I+E+ P RQ
Sbjct: 125 RRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQ 184
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQL 337
+FSATMP IR + K+LK P + +V S A I Y T +++ ++ L
Sbjct: 185 VALFSATMPDQIRRVAQKHLKQPKEIKIV--SKTSTAPTIRQRYWQVTGLHKLDAMTRLL 242
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E + +VF +TK A+ LA + A+ + CE LHGDI Q RERT+ R G+ +I
Sbjct: 243 EVEPYEA--VLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDI 300
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDV ARGLDV + +++Y++P +E++VHR GRTGRAG+KG AIL ++ R ++
Sbjct: 301 LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR 360
Query: 457 SIE 459
+IE
Sbjct: 361 AIE 363
>gi|374300342|ref|YP_005051981.1| DEAD/DEAH box helicase [Desulfovibrio africanus str. Walvis Bay]
gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 532
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 228/381 (59%), Gaps = 23/381 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L +S++++ A+ G + PIQ + M GRD++G+A+TGTGKT AFGIP
Sbjct: 2 ENLRFESLTLSKEMLKAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
IL+ + R + LVL PTRELA QV +E + A +L + VYGG PI
Sbjct: 62 ILEAV------DPRSHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q +AL GV V+GTPGRV+D ++R L L +V+ VVLDEAD+ML +GF ED+E IL+ +
Sbjct: 116 QFKALRQGVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++ FSATM P I L KYL P + V S + L ++ ++ YE P
Sbjct: 176 PEERQTIFFSATMRPEIMRLAEKYLDKP---EFVKVSHKVL----TVPNVEQIYYEVPR- 227
Query: 334 IGQL-----ITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLS 387
G+L I + +VF TK+ D L H A+ Y + LHGD++Q+QR+R ++
Sbjct: 228 FGRLEAMCRIIDFYNPKLTVVFANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMA 287
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G ILIATDVAARG+DV +++ + +Y++P+ E +VHR GRTGRAG+ G A
Sbjct: 288 KFRAGSIEILIATDVAARGIDVEDIEAVFNYDIPSDVEYYVHRIGRTGRAGRSGRAFTFA 347
Query: 448 TDQQARQVKSIERDVGCRFTQ 468
+ ++ +++ I+R + Q
Sbjct: 348 SGKEFYKLRDIQRFTKAKIVQ 368
>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 595
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 229/373 (61%), Gaps = 18/373 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +S++++ A+ G + PIQ + + G D G+A+TGTGKT AFG+PILDK+
Sbjct: 6 EELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDKL 65
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRAL 218
RN L+L PTRELA QV +E ++ A + + +YGG PI Q+RAL
Sbjct: 66 TP-------ERNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRAL 118
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRV+D +KR L LS+ VLDEAD+ML +GF ED+E ILE+ P + Q
Sbjct: 119 AKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQ 178
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM--YEKPSIIGQ 336
++FSAT+PP IR L+ ++L+ P + + QK+ ++ I + ++K + +
Sbjct: 179 RVLFSATVPPAIRELSKRFLREPEMLTVA----QKMLTVPAIEQIYYEVRPHQKMDALCR 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ A K +VF TKR AD + H + Y + LHG+++QSQR+R + FR +
Sbjct: 235 LLDSRA-FHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLD 293
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLDV +VD +I+Y++P+ E +VHR GRTGRAG+ GSA T ++ ++
Sbjct: 294 VLVATDVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKM 353
Query: 456 KSIERDVGCRFTQ 468
+ I R R T+
Sbjct: 354 RDIIRCTRARITE 366
>gi|433605028|ref|YP_007037397.1| Cold-shock DEAD box protein A [Saccharothrix espanaensis DSM 44229]
gi|407882881|emb|CCH30524.1| Cold-shock DEAD box protein A [Saccharothrix espanaensis DSM 44229]
Length = 581
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/408 (37%), Positives = 239/408 (58%), Gaps = 15/408 (3%)
Query: 77 WQHAQSAVDDYVA-----YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLE 131
W+ + AV + A D+ D+ + L + +++ AL+ G + PIQ+ +
Sbjct: 7 WRTPRRAVAERSARLDAMTADAPDDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIP 66
Query: 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191
P GRD++G+A TGTGKT AF +P+L+++ + R P+ LVL PTRELA QV +
Sbjct: 67 PLTDGRDLLGQAATGTGKTAAFALPVLERMAEGGRTE---RAPMALVLVPTRELAVQVSE 123
Query: 192 EFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
H + + +YGG PI Q+R L+ GVD VV TPGR +D + R L L ++ V
Sbjct: 124 AVHRYGREIGARVLPIYGGQPIGRQLRVLEQGVDVVVATPGRAVDHLNRGTLKLEHLEVV 183
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
VLDEAD+ML +GFAED++ IL P+ RQ+++FSATMP I L ++L +P+ + + +
Sbjct: 184 VLDEADEMLDMGFAEDLDAILAEAPEQRQTVLFSATMPGRIDRLARQHLTDPVRITISRE 243
Query: 310 SDQK-LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKS 367
+ A + + KP+ +G+++ A IVF +T+ + D+L + +
Sbjct: 244 QPEPGEAPRVRQSAYVVPRAHKPAALGRVLDIEAPTA-AIVFCRTRDEVDQLTETLNGRG 302
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETF 427
Y E LHG ISQ QR+R ++ R+G ++L+ATDVAARGLDV + +++Y +P+ E++
Sbjct: 303 YRAESLHGGISQEQRDRVMARLRNGTADLLVATDVAARGLDVEQLTHVVNYNVPSAPESY 362
Query: 428 VHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCR--FTQLPRIA 473
VHR GR GRAG++G AI + ++ +K+IER R ++P IA
Sbjct: 363 VHRIGRVGRAGREGVAITLAEPREHGMLKTIERVTKQRIQMEKVPTIA 410
>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 634
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YLK+P V ++ A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAIRRIAQTYLKDPAEV-IIAAKTTTSANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|388545836|ref|ZP_10149115.1| cold-shock DEAD box protein A [Pseudomonas sp. M47T1]
gi|388275953|gb|EIK95536.1| cold-shock DEAD box protein A [Pseudomonas sp. M47T1]
Length = 557
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 247/415 (59%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L ++ +IVAA+ G + IQ+ + ++G DMIG+A+TGTGKT AF +PIL++I
Sbjct: 9 AALGLNPNIVAAVIATGYEEPSAIQQQSIPIILEGHDMIGQAQTGTGKTAAFALPILNRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P++RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++LK+P V + S + I + +K S + +L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + + +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPNAQAVLDARIKKLTNSLAPLVADAEATHGDLLDRLTADIG 414
>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 611
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 228/373 (61%), Gaps = 17/373 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
+L +S++++ AL G PIQ A ++P M G+D+IG+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKVD 69
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+K N P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 MKINA-------PQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLSAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E +LE P++ Q
Sbjct: 123 KRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
+FSATMP I+ + K+L NP+ + + + + I + S + K +++ L
Sbjct: 183 LALFSATMPEQIKRVAAKHLTNPVNISIAAST--TTVESIDQRFVQVSQHNKLEALVRVL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +I
Sbjct: 241 EVENTEG--VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDI 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R ++
Sbjct: 299 LIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLR 358
Query: 457 SIERDVGCRFTQL 469
+IER R +
Sbjct: 359 TIERATNSRIAPM 371
>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 558
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 227/379 (59%), Gaps = 12/379 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L ++ +IV ALA GI+ F IQ+ L A+ G+D+IG+ARTG GKTLA+G+P+LD+I
Sbjct: 95 EELGVAAEIVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDRI 154
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE----------FHESAPSLDTICVYGGTPI 211
P LV+APTRELA QV + F+E SL + GG P
Sbjct: 155 FDDAAIPELDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGHPF 214
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ L G D +VGTPGR++DL K LNLS V +VLDEAD+ML +GF D+E IL+
Sbjct: 215 EKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKILQ 274
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
++P+ RQ+++FSATMP I +L ++ P+ + G D + K
Sbjct: 275 QVPEKRQTILFSATMPAPIMALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLNKL 334
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
+ + ++ H +G + I+FT+TKR A +A +A + + +HGD++Q RE++L+AFR
Sbjct: 335 ATLSAILQAHNRG-RTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAFR 393
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
+ IL+ATDVAARG+DV +V +I+Y++P+ + T+VHR GRTGRAG G+A+ +
Sbjct: 394 SKKIEILVATDVAARGIDVDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLVGWD 453
Query: 451 QARQVKSIERDVGCRFTQL 469
+ + K I+ ++ +L
Sbjct: 454 EVTKWKVIDDELDLNIGEL 472
>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 625
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 223/372 (59%), Gaps = 15/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +++ +V AL G K PIQ A +EP M +D++G+A+TGTGKT AF +P+L+ I
Sbjct: 10 ELGLNESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNSI- 68
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A L + +YGG + Q+ AL
Sbjct: 69 -----DPNTNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E ILE P+ RQ
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQL 183
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NKYL NP+ V + + + I + S + K +++ L
Sbjct: 184 ALFSATMPEQIKRVANKYLDNPVHVKIAATTST--VETIEQRFVQVSQHNKLEALVRVLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +I+
Sbjct: 242 VEKTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDII 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359
Query: 458 IERDVGCRFTQL 469
IER R +
Sbjct: 360 IERATNSRIAPM 371
>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 623
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 223/372 (59%), Gaps = 15/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +++ +V AL G K PIQ A +EP M +D++G+A+TGTGKT AF +P+L+ I
Sbjct: 10 ELGLTESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNSI- 68
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A L + +YGG + Q+ AL
Sbjct: 69 -----DPNTNAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQLNALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E ILE P+ RQ
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQL 183
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NKYL NP+ V + + + I + S + K +++ L
Sbjct: 184 ALFSATMPEQIKRVANKYLDNPVHVKIAATTST--VETIEQRFVQVSQHNKLEALVRVLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +I+
Sbjct: 242 VEKTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDII 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359
Query: 458 IERDVGCRFTQL 469
IER R +
Sbjct: 360 IERATNSRIAPM 371
>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
Length = 498
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 232/382 (60%), Gaps = 19/382 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S +++ ++ A+A G PIQ + PA++GRD++G A+TGTGKT AF +P+ I
Sbjct: 5 SDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPM---I 61
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
R R P LVLAPTRELA QV + F A L + GGT Q + +D
Sbjct: 62 TLLGRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLID 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD ++ TPGR++D ++R L L++V+ +V+DEAD+ML +GF D+E I +R P RQ+
Sbjct: 122 KGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYSIATSM---YEKPSII 334
+ FSATM P I +TN +L NP V++ ++ + G+ ++ + + EK +++
Sbjct: 182 LFFSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRALL 241
Query: 335 GQLITEHAKGGKC---IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFR 390
LI +A+G C I+F K D D +A ++ K Y+ P+HGD+ QS R RTL +FR
Sbjct: 242 RALI--NAEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLESFR 299
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
D + L+A+DVAARGLD+P V + ++++P+ +E +VHR GRTGRAG+ G AI+I + +
Sbjct: 300 DNKLRFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGVAIMICSGR 359
Query: 451 QARQVKSIERDVGCRFTQLPRI 472
+ ++ +ER V +PR+
Sbjct: 360 DEKNLEDVERLVQ---NPIPRL 378
>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
Length = 452
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 230/374 (61%), Gaps = 5/374 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ++ +I LA RGI++ F IQ+ L A+ G+D+IG+ARTG GKT FG+P+LD++
Sbjct: 12 AELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDRV 71
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
+ P L++ PTRELA+QV + ++A L +YGG P Q++ L
Sbjct: 72 FDDADIAPPDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKLLQ 131
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQ 278
GVD V+GTPGR++DL +R L L V VVLDEAD+ML +GF +E ILE L N Q
Sbjct: 132 RGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAHQ 191
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L+ +++ P+ + ++D+ + + +K ++I ++
Sbjct: 192 TMLFSATMPGAILNLSRQFMHKPVHIRAESEADEVTHETTRKVTFQAHRMDKVAVIAHIL 251
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+G + I+FT+TKR A +LA +A + ++ +HGD+ Q RE++L AFR G +IL
Sbjct: 252 QAQGRG-RSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDIL 310
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATD+AARG+DV +V +I+Y++P+ TF+HR GRTGRAG G+A+ + + + +
Sbjct: 311 VATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDELAKWRV 370
Query: 458 IERDVGCRFTQLPR 471
I ++G P+
Sbjct: 371 INDELGLDTATPPQ 384
>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 640
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 226/366 (61%), Gaps = 13/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+
Sbjct: 69 SNA-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP I + YLK+P V + + A+ Y + +++ ++
Sbjct: 183 KRQVALFSATMPPAICRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTR 241
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+
Sbjct: 242 ILEVEPFDG--MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 299
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV V +++Y++P +E++VHR GRTGRAG+ G AIL T ++
Sbjct: 300 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGM 359
Query: 455 VKSIER 460
++SIER
Sbjct: 360 LRSIER 365
>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
Length = 484
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 230/387 (59%), Gaps = 19/387 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L+++ ++ A+ G PIQ + PA++GRD++G A+TGTGKT AF +P+ I
Sbjct: 5 SDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPM---I 61
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
R R P LVLAPTRELA QV + F A L + GGT Q + +D
Sbjct: 62 TLLGRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQDKIID 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD ++ TPGR++D ++R L L++V+ +V+DEAD+ML +GF D+E I +R P RQ+
Sbjct: 122 KGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLY---SIATSMYEKPSII 334
+ FSATM P I +TN +L NP +++ ++ + G+ ++ + EK ++
Sbjct: 182 LFFSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELL 241
Query: 335 GQLITEHAKGGKC---IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFR 390
+LI A+G C I+F K D D +A ++ K Y P+HGD+ QS R +TL FR
Sbjct: 242 RKLI--DAEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDKFR 299
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
D IL+A+DVAARGLD+P V + ++++P+ +E +VHR GRTGRAG+ G+AI+I +
Sbjct: 300 DNELRILVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPR 359
Query: 451 QARQVKSIERDVGCRFTQLPRIAVEGG 477
+ ++ +ER V +PR+ GG
Sbjct: 360 DEKNLEDVERLVK---ETIPRLDAPGG 383
>gi|333900885|ref|YP_004474758.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333116150|gb|AEF22664.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 557
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 245/415 (59%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G DMIG+A+TGTGKT AF +P+L KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L+ + VYGG P+ Q++A+
Sbjct: 69 DPAK------REPQVLILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS + +VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLRRDEKVLSTIAHLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + + I + +K + + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT--QTVSRIEQAHLMIHADQKTNAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I F +TK+ LA A+ AK + L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEEFDALIAFVRTKQATLDLAAALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRF--TQLP---RIAVEGGGDMYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + +LP ++ + N + + +G + DR AD G
Sbjct: 360 IERVTGQKVGEVKLPNAQQVLDARIKKLTNSLAPLVADAEASHGDLLDRLTADIG 414
>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 559
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 257/476 (53%), Gaps = 21/476 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L I + V L +GI+ P+Q+ + + G+D+I RARTGTGKTLAF +PIL
Sbjct: 3 NFQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE----SAPSLDTICVYGGTPISHQM 215
+I + K P L++APTRELA Q+ +E + + + VYGG + Q+
Sbjct: 63 QI---DPKRA---YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQL 116
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L+ G ++GTPGR++D ++R L L V+ +VLDEADQML +GF +DVE ++ LP
Sbjct: 117 RKLEGGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHALPY 176
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+M+FSATMP ++ L Y+ P+ + + G S L + I + + K +
Sbjct: 177 RRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPL-EQIQQVVVECTDRSKQDALR 235
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I E I+F +TKR A L A +A Y + LHGD+SQ++RE + FRD +
Sbjct: 236 TMI-EQYNPFLAIIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKL 294
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+L+ATDVAARGLDV V + +Y++P+ E+++HR GRTGRAG G AI +
Sbjct: 295 QLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGNGMAITFAAGKDLND 354
Query: 455 VKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGF 514
++ IE + R L R+ + G + G SG + R R S + G
Sbjct: 355 LQRIEEGISLR---LKRVRYDSGAGSLRESTGDSGRDAGRPRNTRSVSSLESD--NERGQ 409
Query: 515 GRSGGYRSPGSGRYGGNNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGE 570
GR R GSGR GN +SG G S G G ++ R + G SR G GE
Sbjct: 410 GRGRADRGTGSGRSRGN---HSGSARGEQSRGRGESSRRDERGTGRVSSREGRAGE 462
>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 626
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 231/378 (61%), Gaps = 16/378 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML +GF +DV I+E+ P +
Sbjct: 121 ALKNGAHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPAS 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L++P +D+ G+ ++ ++ + I + + ++I
Sbjct: 181 AQRVLFSATMPPIVKQIVDRFLRSPERIDVAGE-NRTVSQVSQQFWIVKGVEKDEAMIRM 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCE--PLHGDISQSQRERTLSAFRDGRF 394
L TE IVF +T++D +RLA ++ S C+ LHGDI QS RERT+ + G
Sbjct: 240 LETEENIDA-SIVFVRTRQDTERLADWLS-SRGCKAAALHGDIPQSLRERTVDHIKRGVI 297
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
++L+ATDV ARGLDV + + +Y++P E+++HR GRTGRAG+ G AIL+ Q R
Sbjct: 298 DVLVATDVVARGLDVQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRM 357
Query: 455 VKSIERDVGCRF--TQLP 470
+++IER R QLP
Sbjct: 358 LRTIERVTKSRMEEIQLP 375
>gi|453364213|dbj|GAC80062.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia malaquae NBRC
108250]
Length = 574
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 15/374 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
DDS+ D DI + AA+ G PIQ A + P ++GRD++G A+TGTGKT
Sbjct: 7 DDSAPVSSFD--DFDIDGRVRAAVDEVGYETPSPIQAATIPPLLEGRDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYG 207
AF IP+L +I R P LVLAPTRELA QV + F A P + + +YG
Sbjct: 65 AAFAIPVLSRI------DTSARKPQALVLAPTRELALQVSEAFGRYASKMPEVKVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q+ L G +VGTPGRVID + + L+LSE++F+VLDEAD+ML++GFAEDVE
Sbjct: 119 GQSYGVQLSGLRRGAQVIVGTPGRVIDHLDKGTLDLSELEFLVLDEADEMLTMGFAEDVE 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P +Q +FSATMP I L KYL NP V + + A I+ + S
Sbjct: 179 RILADTPDKKQVALFSATMPASIGRLARKYLNNPQEVTV--KAKTATASNITQKYLQVSH 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ G I+F +TK + LA + ++ + ++GD+ Q+QRERT+
Sbjct: 237 QRKLDALTRVLEVETFDG-MIIFARTKSATEELAEKLRSRGLSAMAINGDMVQAQRERTI 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+ +DG +IL+ATDVAARGLDV + +++Y++P+ E++VHR GRTGRAG+ G+A+L
Sbjct: 296 NQLKDGSLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLF 355
Query: 447 YTDQQARQVKSIER 460
+ ++ ++SIER
Sbjct: 356 VSPRERHLLRSIER 369
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 233/381 (61%), Gaps = 13/381 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ D++ ALA G PIQ A + P M+GRD++G+A+TGTGKT AF +PIL +I
Sbjct: 18 LELHPDVLRALADVGYESPSPIQAATIPPLMEGRDVLGQAQTGTGKTAAFALPILSRI-- 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRALDY 220
+ K G+ P LVLAPTRELA QV + F + A L + +YGG Q+ +L
Sbjct: 76 -DLKPGK---PQALVLAPTRELAIQVAEAFQKYATHMRGLQVLPIYGGQSYGPQLHSLKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++++VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPQRQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + ++LK+P+ V + S A+ Y + M++ ++ I E
Sbjct: 192 LFSATMPTVIRKIAQRHLKDPVEVT-IKSSTTTAANIHQRYWFVSGMHKLDALT--RILE 248
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK+ + LA + A+ ++GDI+Q QRER + +DG+ +IL+A
Sbjct: 249 AEPFDAMIIFARTKQATEELAGKLQARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVA 308
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + + +Y++P +E++VHR GRTGRAG+ G AIL + ++ + +IE
Sbjct: 309 TDVAARGLDVERISHVFNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLGAIE 368
Query: 460 RDVGCRFTQLPRIAVEGGGDM 480
R Q+ +VE D+
Sbjct: 369 RATRQPIEQMQLPSVEVVNDV 389
>gi|386850704|ref|YP_006268717.1| Cold-shock DEAD box protein A [Actinoplanes sp. SE50/110]
gi|359838208|gb|AEV86649.1| Cold-shock DEAD box protein A [Actinoplanes sp. SE50/110]
Length = 569
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 226/376 (60%), Gaps = 14/376 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL G + PIQ+ + P + G D++G+A TGTGKT AF +P+L +
Sbjct: 16 LGLRPELLRALTDLGYEEPTPIQREAITPLVAGHDLVGQAATGTGKTAAFALPLLQSLTP 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
G P LVL PTRELA+QV + H L+ + VYGG PIS Q++ L G
Sbjct: 76 -----GSADTPTALVLVPTRELAEQVSQAVHRYGRDLNVRVLPVYGGQPISRQLQVLRRG 130
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VVGTPGRV+D I+R L L ++ VVLDEAD+ML +GFAED+E IL P RQ+++
Sbjct: 131 VDVVVGTPGRVLDHIERETLRLDAIRTVVLDEADEMLDMGFAEDIEAILAETPAERQTVL 190
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--IT 339
FSATMPP I ++ ++L++PL + + D AD + +T M +P L I
Sbjct: 191 FSATMPPRIDAIARRHLRDPLRIRM--GRDTAAADALPSVRQSTYMVARPHKAAALGRIL 248
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ G IVF +T+ + + + ++ + Y E LHG +SQ QR+R +S R G +L+
Sbjct: 249 DVEMPGAAIVFCRTREEVEEVTESLNGRGYRAEALHGGLSQDQRDRVMSRLRAGTTELLV 308
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV + +I++ +P+ E +VHR GR GRAG+ G+AI + ++ R +K+I
Sbjct: 309 ATDVAARGLDVDLLTHVINFTVPSAPEAYVHRIGRVGRAGRTGAAITLAEPREQRLLKAI 368
Query: 459 ERDVGCRFT--QLPRI 472
ER G R +LP +
Sbjct: 369 ERLTGQRIVVEKLPSV 384
>gi|381172244|ref|ZP_09881376.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380687289|emb|CCG37863.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 612
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 220/352 (62%), Gaps = 13/352 (3%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L N+
Sbjct: 3 AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNA-DLNQV----- 56
Query: 173 NPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + F E+ P + VYGG P + Q+ AL GV VVGTP
Sbjct: 57 KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ RQ +FSATMPP
Sbjct: 117 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPA 176
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IR + YLK+P V + + A+ Y + +++ ++ L E G I+
Sbjct: 177 IRRIAQTYLKDPAEVTIAAKTTTS-ANIRQRYWWVSGLHKLDALTRILEVEPFDG--MII 233
Query: 350 FTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+ +IL+ATDVAARGLD
Sbjct: 234 FARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLD 293
Query: 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
V + +++Y++P +E++VHR GRTGRAG+ G AIL T ++ ++SIER
Sbjct: 294 VERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 345
>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 539
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 228/365 (62%), Gaps = 15/365 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS+ I A+ G + PIQ+ + ++G D+IG+A+TGTGKT AFGIP++DK+
Sbjct: 5 SDFQISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPVIDKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ R L+L PTRELA QV E + + + T+ +YGG I HQ++AL
Sbjct: 65 TE-------ERYVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALK 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGR++D I+R L L++V +VLDEAD+ML +GF +D+E IL + RQ+
Sbjct: 118 QGVQVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKGARQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQLI 338
++FSATMPP I+ L+ +Y+ P TV + + + A I LY + S+ +
Sbjct: 178 LLFSATMPPAIKKLSRRYMTTPKTVTI--NKGEVTAPSIDQLYYKVLERNKIDSLCRIID 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E G I+F +TK+ L A+ A+ Y + LHGD++QSQR+ + FRD L
Sbjct: 236 SEEVDLG--ILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFL 293
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARG+DV NV +I+Y++P E++VHR GRTGRAG+KG A+ + T ++ + ++S
Sbjct: 294 IATDVAARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRS 353
Query: 458 IERDV 462
IE+++
Sbjct: 354 IEQEI 358
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 239/400 (59%), Gaps = 16/400 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + +K G LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISALCDNEKKKGVK----ALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGR++D I R L L + F++LDEAD+ML++GF ED+E I+E
Sbjct: 118 IKDIKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTS 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAPIKKLALNYMKKD--VEHIAILKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
N L+ATDVAARG+DV N+ +I+Y++P +E++VHR GRTGRA K+G+A + T ++
Sbjct: 295 TLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354
Query: 453 RQVKSIERDVGCRFT--QLPRIA--VEGGGD-MYNDMGGR 487
++ IER + + T +LP + +E D + ND+ +
Sbjct: 355 SSIRQIERIIKSKITKKELPTLEDILEKKYDNLLNDITSK 394
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/371 (42%), Positives = 227/371 (61%), Gaps = 12/371 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + ++ A+ G + PIQ+ + AM GRD+IG+A+TGTGKT AFGIP++ KI
Sbjct: 9 ELGLEPKLLQAITELGFEEATPIQEIAIPVAMMGRDLIGQAQTGTGKTAAFGIPLISKID 68
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDY 220
E+ + LV+ PTRELA QV +E + + ++ +YGG I Q+RAL
Sbjct: 69 PSEERV------VALVMTPTRELAIQVAEEIGKLTRFKGVRSLPIYGGQDIGRQIRALKK 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
++GTPGR++D I R + L++VQ VVLDEAD+ML +GF ED+ IL +P+ RQ+M
Sbjct: 123 HPQIIIGTPGRLLDHINRKTIRLNDVQTVVLDEADEMLDMGFMEDITSILSLVPEERQTM 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMPP I+ L N++L++P V ++ Q A I I K + +L+ +
Sbjct: 183 LFSATMPPNIQKLANQFLRDPEHVSVI--PKQVSAPLIEQAYIEVPERVKFDALSRLL-D 239
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
IVF +TKR D L+ A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+A
Sbjct: 240 MESPELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVA 299
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV V +I+++LP E++VHR GRTGRAGK+GSA T ++ + IE
Sbjct: 300 TDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTPREIDHLNFIE 359
Query: 460 RDVGCRFTQLP 470
R R + P
Sbjct: 360 RVTRHRIPRKP 370
>gi|389806352|ref|ZP_10203483.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
gi|388445572|gb|EIM01636.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
Length = 643
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 230/381 (60%), Gaps = 13/381 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D++ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I
Sbjct: 18 LALHPDVLRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRI-- 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
K G+ P LVLAPTRELA QV + F A P + +YGG Q+ +L
Sbjct: 76 -ERKAGK---PQALVLAPTRELAIQVAEAFQTYAAHLPGFQVLPIYGGQSYGPQLHSLKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++++VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPQRQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + ++LK+P+ V + S A+ Y + M++ ++ I E
Sbjct: 192 LFSATMPTQIRKIAQRHLKDPVEVT-IKSSTTTAANIHQRYWFVSGMHKLDALTR--ILE 248
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK+ + LA + A+ ++GDI+Q QRER + +DG+ +IL+A
Sbjct: 249 AEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVA 308
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL + ++ + +IE
Sbjct: 309 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLGAIE 368
Query: 460 RDVGCRFTQLPRIAVEGGGDM 480
R Q+ +VE D+
Sbjct: 369 RATRQPIEQMQLPSVEVVNDV 389
>gi|403717110|ref|ZP_10942499.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
gi|403209372|dbj|GAB97182.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
Length = 479
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 219/352 (62%), Gaps = 14/352 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII--- 162
+ DIVAALA GI FPIQ A+ G D+IG+A+TGTGKTL FG+P+L+K++
Sbjct: 40 VHPDIVAALAGAGIVHPFPIQAMTAPVALTGHDIIGQAKTGTGKTLGFGVPLLNKVVAPG 99
Query: 163 --KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
F GR P LV+ PTREL QV + + + +YGG Q+ AL
Sbjct: 100 DESFESLPHPGR-PQALVVVPTRELCTQVTGDLKTAGKKRGIRVESIYGGRAFEPQIEAL 158
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV+ +VGTPGR+IDL K+ L LS V+ VVLDEAD+ML +GF DVE IL + P +RQ
Sbjct: 159 RRGVEVIVGTPGRLIDLNKQGHLALSNVRTVVLDEADEMLDLGFLPDVEKILAQTPASRQ 218
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATSMYEKPSIIGQ 336
+M+FSATMP + +L +Y+ P + V D+ D++ I + +K ++ +
Sbjct: 219 TMLFSATMPGAVVALARRYMTQPTHIRAVSDAGDDRQTVAAIEQFVYRAHAMDKVELLSR 278
Query: 337 LITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++ AKG G I+F++TKR A ++A + + + +HGD+ Q RE+ L AFR+G+
Sbjct: 279 VL--QAKGRGLTIIFSRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRNGKV 336
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+IL+ATDVAARG+DVPNV +++Y+ P +T++HRTGRTGRAG G AI +
Sbjct: 337 DILVATDVAARGIDVPNVTHVVNYQCPEDEKTYLHRTGRTGRAGLTGVAITL 388
>gi|32399063|emb|CAD98303.1| DEAD/DEAH box helicase, possible [Cryptosporidium parvum]
gi|323508801|dbj|BAJ77294.1| cgd6_4860 [Cryptosporidium parvum]
Length = 688
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 242/396 (61%), Gaps = 29/396 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 16 IDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 75
Query: 161 IIK---FN-EKHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQ 214
++K F+ KHGR PL LVL PTRELA+QV EF + VYGG+P Q
Sbjct: 76 LLKKGKFDPNKHGR--RPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQ 133
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 134 IQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVR 193
Query: 275 -----------QNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLV-----GDSDQKLA- 315
QN+ Q ++FSAT+PPW++++ + + + +TVD+ G+ + + A
Sbjct: 194 KETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAA 253
Query: 316 -DGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ L
Sbjct: 254 RSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVL 313
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HGDI Q+QRE L AF++GR+ L+ATDVAARGL + +V ++I P +T++HR+GR
Sbjct: 314 HGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGR 373
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
TGRAGK G+AI+ + SIE+ F ++
Sbjct: 374 TGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRI 409
>gi|441517957|ref|ZP_20999687.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441455272|dbj|GAC57648.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 582
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 223/368 (60%), Gaps = 13/368 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I + ++AAL G PIQ A + P M GRD++G A+TGTGKT AF +PIL ++
Sbjct: 19 IDERVLAALDEVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAVPILSRL---- 74
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDYGV 222
R P LVLAPTRELA QV + F P + + +YGG Q+ L G
Sbjct: 75 --DASARKPQALVLAPTRELALQVAEAFGRYSSRMPEVKVLPIYGGQSYGIQLSGLRRGA 132
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+VGTPGR+ID + + L+LSE+ F+VLDEAD+MLS+GFAED+E IL P ++Q +F
Sbjct: 133 QVIVGTPGRIIDHLDKGTLDLSELAFLVLDEADEMLSMGFAEDIERILADTPDSKQVALF 192
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMPP I L KYL +P V + + A I+ + S K + +++
Sbjct: 193 SATMPPTIGRLARKYLDDPQEVKV--KAQTSTASNITQRYLTVSHQRKLDALTRVLEVEP 250
Query: 343 KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
G I+F +TK + LA + A+ + ++GD+ Q+QRERT++ ++G +IL+ATD
Sbjct: 251 FDG-MIIFVRTKSGTEELAEKLRARGLSAMAINGDMVQAQRERTINQLKEGGIDILVATD 309
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461
VAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++ +++IER
Sbjct: 310 VAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIERA 369
Query: 462 VGCRFTQL 469
T++
Sbjct: 370 TRQELTEI 377
>gi|336176951|ref|YP_004582326.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334857931|gb|AEH08405.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 694
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/346 (42%), Positives = 215/346 (62%), Gaps = 6/346 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + ++IV AL +GI FPIQ+ L A+ G D+IG+ARTGTGKTLAFGIP+ +
Sbjct: 42 ADLGVREEIVEALRAKGIVSPFPIQELTLPLALAGSDIIGQARTGTGKTLAFGIPLAQQA 101
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+E G P LV+ PTREL QV + S L + VYGG Q+ +L
Sbjct: 102 TSRDE--GASGQPQALVVVPTRELCLQVTADIDRAGSGRGLRVLPVYGGRAYEPQLASLR 159
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VVGTPGR++DL ++NAL L+ V+ +VLDEAD+ML +GF DVE IL +LP RQ+
Sbjct: 160 AGVDIVVGTPGRLLDLARQNALVLTAVRMLVLDEADEMLDLGFLPDVERILAQLPDIRQT 219
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMPP + SL ++++ P+ V + + IS + +K ++ +++
Sbjct: 220 LLFSATMPPPVISLARRFMRRPVHVTAEHPDEGRTVPDISQHVFRAHALDKIEVLARVLQ 279
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ G IVF +T+R ADR+A + + + +HGDI Q QRE+ L AFR G+ ++L+
Sbjct: 280 AEGR-GLAIVFVRTRRTADRVADDLTGRGFAAAAVHGDIGQGQREQALRAFRSGKIDVLV 338
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
ATDVAARG+D+ V +++Y+ P ++HR GRTGRAG G A+
Sbjct: 339 ATDVAARGIDIGGVTHVVNYQCPEDENVYLHRVGRTGRAGGSGVAV 384
>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 744
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 153/418 (36%), Positives = 234/418 (55%), Gaps = 23/418 (5%)
Query: 70 DFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAV 129
DFK ++S +D +K ++SK + + L +RGI+ LFPIQ+
Sbjct: 39 DFKPKNRDWDSESEDEDTKKNQIEAKHNQDNMSKYIKNAKTIEILNKRGITYLFPIQEHC 98
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH----GRGRNPLCLVLAPTREL 185
+ G+D+IG+ RTG+GKTL F +P+++K+ NE + + + P LV+ PTREL
Sbjct: 99 FQAIQAGKDLIGKDRTGSGKTLGFSLPLIEKL--RNEGNFTSIKKKQTPYMLVVVPTREL 156
Query: 186 AKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
QV E + + + +YGG + Q + GV+ VVGTPGR+ID +R AL
Sbjct: 157 CIQVANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEIVVGTPGRIIDQYERGALM 216
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL--------ERLPQNRQSMMFSATMPPWIRSLT 294
+ VLDEADQML+ GF ED+E I E PQN ++FSATMP W+ +
Sbjct: 217 FHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKGEERPQN---LLFSATMPSWVHDIA 273
Query: 295 NKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG--KCIVFT 351
K+L+ + + +DLV + K + ++ +I +++ IG +I + G + I+F
Sbjct: 274 RKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVILCYGGGAHSRVIIFC 333
Query: 352 QTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
+TK +A+ + + + LHGDI Q QRE T FR+G+F L+AT+VAARGLD+P
Sbjct: 334 ETKNEANEIMLKANIKQDVQVLHGDIPQKQREITFQGFREGKFKCLVATNVAARGLDIPE 393
Query: 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
VDLI+ E P + ++HR+GRTGRAGKKG I YT +Q ++ IE+ + ++
Sbjct: 394 VDLIVQLEPPKELDAYIHRSGRTGRAGKKGVCITFYTKKQQSLIERIEKKCHIKMQKV 451
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 238/400 (59%), Gaps = 16/400 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + +K G LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISALCDKEKKKGVK----ALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGRV+D I R L L + F++LDEAD+ML++GF ED+E I+E
Sbjct: 118 IKDIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTS 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAPIKKLALNYMKKD--VEHIAIVKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
N L+ATDVAARG+DV N+ +I+Y++P +E++VHR GRTGRA K+G+A + T ++
Sbjct: 295 TLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354
Query: 453 RQVKSIERDVGCRFT--QLPRIA--VEGGGD-MYNDMGGR 487
++ IER + T +LP + +E D + ND+ +
Sbjct: 355 SSIRQIERITKSKITKKELPTLEDILEKKYDNLLNDITSK 394
>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 699
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 239/391 (61%), Gaps = 20/391 (5%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D +EG+ + L + +I+AA+ G PIQ A + P ++ RD++G A+TGTGKT
Sbjct: 29 DSDQAEEGVTFASLGLPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKT 88
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA---KQVEKEFHESAPSLDTICVYG 207
AFG+P+L I+ +E R+ LVLAPTRELA Q ++F A LD + VYG
Sbjct: 89 AAFGLPLL-AIVDADE-----RDVQALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYG 142
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +GFAEDVE
Sbjct: 143 GSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVE 202
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATS 326
I +P R + +FSATMP I + ++LK+P+ V + ++ D I Y++
Sbjct: 203 TIASAVPAQRLTALFSATMPAAIEKVAREHLKDPVKVAV--STESSTVDTIHQTYAVVPY 260
Query: 327 MYEKPSIIGQLIT--EHAKGGK-----CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDIS 378
++ ++ L T +H G+ IVF +T+ D + ++ + A+ + + GD++
Sbjct: 261 KHKIGALCRVLATRAQHIARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVA 320
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438
Q++RER + + G ++L+ATDVAARGLDV + L++++++P E +VHR GRTGRAG
Sbjct: 321 QTERERMVERLKTGALDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAG 380
Query: 439 KKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
++G A+ +T ++ +++ IE+ G ++
Sbjct: 381 RQGRALTFFTPREHGRLRRIEKLTGTDMEEV 411
>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384412590|ref|YP_005621955.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932964|gb|AEH63504.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 458
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 154/370 (41%), Positives = 222/370 (60%), Gaps = 6/370 (1%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +V AL G SK PIQ + ++G+D+ G A+TGTGKT AF +P + +
Sbjct: 11 LGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSI-HYLA 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYG 221
N + R L+L+PTRELA Q+ + ++ L V+GG PI QMR LD G
Sbjct: 70 TNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRMLDRG 129
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D +V TPGR++DLI + AL L +V+ VLDEADQML +GF + I + LP+NRQ++
Sbjct: 130 TDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLF 189
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I+ L++++L +P+TV + S A+ + + I + EK +++ +
Sbjct: 190 FSATMPKTIQELSSQFLSDPVTVSVAPQSST--AERVEQFGIFVNQSEKQALLTITLKNT 247
Query: 342 AKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ +VFT+TK ADR+ H A +HG+ SQ QRER L+AFR+GR IL+AT
Sbjct: 248 PGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKILVAT 307
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
D+AARG+DVP V + +YELPN +E +VHR GRT RAG+ G AI + + ++SIER
Sbjct: 308 DIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLRSIER 367
Query: 461 DVGCRFTQLP 470
+ LP
Sbjct: 368 LTRVKLQILP 377
>gi|345860075|ref|ZP_08812402.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
gi|344326819|gb|EGW38270.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
Length = 536
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/380 (42%), Positives = 233/380 (61%), Gaps = 23/380 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ I+ AL+ G + PIQK + A++ D+IG+A+TGTGKT AF IPI +K+
Sbjct: 12 IKLSKQILQALSEMGFEEPSPIQKEAIPYALEAVDLIGQAQTGTGKTAAFSIPIAEKV-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG 221
N K + +++ PTRELA QV +E + + + +YGG PI Q+RAL G
Sbjct: 70 -NPKFLAVQ---AIIVTPTRELAIQVSEEIAKIGKYRHVKPLPIYGGQPIDRQIRALRMG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSM 280
VVGTPGR++D + R L L + VVLDEAD+ML +GF ED+E IL+ +P + RQ M
Sbjct: 126 YQVVVGTPGRLLDHLNRGTLRLQHAKIVVLDEADEMLDMGFIEDIEAILKDVPSEGRQIM 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSI-IGQL- 337
+FSATMPP IR L Y+ NP V + D +++ I YE + SI + L
Sbjct: 186 LFSATMPPAIRKLAQTYMNNPRAVTVSRDE-------LTVPLIDQVFYEARESIKVDALC 238
Query: 338 -ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 239 RIIDIEDIGQGIIFCRTKRGVDELVAALEARGYFADGLHGDLSQQQRDRVMKRFRDGKSE 298
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ NV +I++++P ++VHR GRTGR G+KG AI + + ++ RQ+
Sbjct: 299 LLVATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQL 358
Query: 456 KSIERDVGCRF--TQLPRIA 473
+ IE + R +LP +A
Sbjct: 359 RLIENLIKTRIRRQELPSLA 378
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 220/364 (60%), Gaps = 12/364 (3%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ A+ G + PIQ + AM G D+IG+A+TGTGKT AFGIP++ KI E+
Sbjct: 13 VLQAVTEMGFEESTPIQAKAIPIAMSGADLIGQAQTGTGKTAAFGIPLISKIPPEEERI- 71
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVG 227
+ LV+ PTRELA QV E + A + T+ +YGG I Q+RAL ++G
Sbjct: 72 -----VALVMTPTRELAIQVADELGKLARYKGIRTLPIYGGQDIGRQIRALKKKPQIIIG 126
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR++D I R + L +VQ VVLDEAD+ML +GF ED+ IL +P+ RQ+M+FSATMP
Sbjct: 127 TPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDITTILSLVPEERQTMLFSATMP 186
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
P I+ L ++L+NP V ++ + A I I EK + +L+ +
Sbjct: 187 PNIQKLAQQFLRNPEHVSVIPKN--ITAPSIEQIYIEVHEREKFEALSRLL-DMESPDLA 243
Query: 348 IVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF +TKR D L+ A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVLVATDVAARG 303
Query: 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
LDV V +I+++LP E++VHR GRTGRAGK+G A T ++ + IER R
Sbjct: 304 LDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGVAYTFVTPREIDHLHFIERVTRQRI 363
Query: 467 TQLP 470
+ P
Sbjct: 364 ARRP 367
>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 447
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/385 (39%), Positives = 232/385 (60%), Gaps = 23/385 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ D D+ A + G + PIQ + P M GRD++G A+TGTGKT AF +PIL
Sbjct: 1 MNFQSFDFHPDVAAGVTAAGYASPTPIQAQAIPPVMLGRDVMGLAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL------DTICVYGGTPIS 212
++++ + H R L++APTRELA+Q+ HES +L +I VYGG I+
Sbjct: 61 HRLMQGKQGHVR-----ALIVAPTRELAEQI----HESISALGRQTRLRSITVYGGVNIN 111
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q++ L GV+ VV PGR++D I + +++S V+ +VLDEADQM +GF D+ IL+
Sbjct: 112 PQIQKLKSGVEIVVACPGRLLDHIGQGTIDVSRVEVLVLDEADQMFDMGFFPDIRRILKH 171
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP+ RQ+++FSATMP IR L ++ L +P+TV VG++ + +LY + + +
Sbjct: 172 LPKQRQTLLFSATMPDEIRRLAHEVLNDPVTVQ-VGNTAPPVTVSHALYPVEQHLK---T 227
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRD 391
+ + H +VFT+TK A RL + K+ Y L G++SQ++R+ L FRD
Sbjct: 228 PLLLELLRHTDTESVLVFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRD 287
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G F IL+ATD+AARG+DV + +++Y++P+T+E +VHR GRTGRA + G A + T +
Sbjct: 288 GTFQILVATDIAARGIDVSQISHVVNYDIPDTAEAYVHRIGRTGRAARSGDAFTLVTSED 347
Query: 452 ARQVKSIERDVGCRFTQLPRIAVEG 476
V++IER + + L R VEG
Sbjct: 348 TAMVRAIERALK---SSLERRTVEG 369
>gi|293334655|ref|NP_001168054.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
gi|223945725|gb|ACN26946.1| unknown [Zea mays]
gi|414876118|tpg|DAA53249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 672
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 221/351 (62%), Gaps = 12/351 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--ILDKIIKFNE 166
DI+ + + G S PIQ AM+GRD++ A+TG+GKTL + +P IL K + N
Sbjct: 167 DILREVLQAGFSAPTPIQAQSWPIAMKGRDIVAVAKTGSGKTLGYLLPGFILLKRLHHNS 226
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ G P LVL+PTRELA Q++ E F S+ + + C+YGG P Q+R L+ G D
Sbjct: 227 REG----PTVLVLSPTRELATQIQDEAIKFGRSS-RISSTCLYGGAPKGPQLRELERGAD 281
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR+ D+++ N ++L +V ++VLDEAD+ML +GF + I++++P RQ++M++
Sbjct: 282 VVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQTLMYT 341
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHA 342
AT P +R + + L NP+ V+ +G++DQ +A+ I+ + EK + Q++
Sbjct: 342 ATWPKEVRKIASDLLNNPVQVN-IGNTDQLVANKSITQHVEVIPHMEKSRRLDQILRSQD 400
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G K I+F TKR D+LA +++ Y +HGD SQ++R+ L+ FR GR +L+ATDV
Sbjct: 401 PGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQAERDSVLNDFRSGRCPVLVATDV 460
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
AARGLD+ ++ ++++Y+ P E +VHR GRTGRAG GSA + DQ ++
Sbjct: 461 AARGLDIKDIRIVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSK 511
>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
Length = 637
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 227/372 (61%), Gaps = 15/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +++ ++ AL G PIQ A ++P M G+D++G+A+TGTGKT AF +P+L +
Sbjct: 10 ELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLCSV- 68
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q++AL
Sbjct: 69 -----DANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G VVGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E ILE P++RQ
Sbjct: 124 RGPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQL 183
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NK+L+NP+ + + + + I + S + K +++ L
Sbjct: 184 ALFSATMPEQIKRVANKHLRNPVNISIA--ASHTTVESIEQRFVQVSQHNKLEALVRVLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 242 VENTEG--IIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDIL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 359
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 360 IERATNSRISPM 371
>gi|397677505|ref|YP_006519043.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395398194|gb|AFN57521.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 458
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 154/370 (41%), Positives = 222/370 (60%), Gaps = 6/370 (1%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +V AL G SK PIQ + ++G+D+ G A+TGTGKT AF +P + +
Sbjct: 11 LGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSI-HYLA 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYG 221
N + R L+L+PTRELA Q+ + ++ L V+GG PI QMR LD G
Sbjct: 70 TNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRMLDRG 129
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D +V TPGR++DLI + AL L +V+ VLDEADQML +GF + I + LP+NRQ++
Sbjct: 130 TDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLF 189
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I+ L++++L +P+TV + S A+ + + I + EK +++ +
Sbjct: 190 FSATMPKTIQELSSQFLSDPVTVSVAPQSST--AERVEQFGIFVNQSEKQALLTITLKNT 247
Query: 342 AKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ +VFT+TK ADR+ H A +HG+ SQ QRER L+AFR+GR IL+AT
Sbjct: 248 PGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKILVAT 307
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
D+AARG+DVP V + +YELPN +E +VHR GRT RAG+ G AI + + ++SIER
Sbjct: 308 DIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLRSIER 367
Query: 461 DVGCRFTQLP 470
+ LP
Sbjct: 368 LTRVKLQILP 377
>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
Length = 719
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 226/366 (61%), Gaps = 13/366 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L + ++AAL G PIQ A + + GRD++G A+TGTGKT AF +P L K+
Sbjct: 79 AELGVDGRVLAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKL 138
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+ ++ HG R+ LVLAPTRELA QV + F A L+ + VYGG+ Q+ L
Sbjct: 139 AELSDLHGPQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAGL 198
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID + + +L L ++ +VVLDEAD+ML +GF+EDVE IL + P +Q
Sbjct: 199 KRGAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVEKQ 258
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSIIG 335
+FSATMP IR + +YL++P + + K G + Y ++ ++
Sbjct: 259 VALFSATMPKAIRRIAQQYLRDPQEITVKA----KTTTGTNTRQRYMQVMGPHKLDAMTR 314
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E G IVF +TK + +A + A+ Y ++GDI Q+ RERT+ + R+G+
Sbjct: 315 VLEVEDYDG--VIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKI 372
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + L+++Y++P+ +E++VHR GRTGRAG+KG AIL T ++
Sbjct: 373 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYL 432
Query: 455 VKSIER 460
+++IE+
Sbjct: 433 LRAIEK 438
>gi|409397875|ref|ZP_11248733.1| DEAD/DEAH box helicase [Pseudomonas sp. Chol1]
gi|409117614|gb|EKM94041.1| DEAD/DEAH box helicase [Pseudomonas sp. Chol1]
Length = 556
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 229/371 (61%), Gaps = 13/371 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + VYGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + Q +A I + +K + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVAR-IEQAHLMVHADQKIQAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQ 468
IER R +
Sbjct: 360 IERVTNQRVAE 370
>gi|357637041|ref|ZP_09134916.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
gi|357585495|gb|EHJ52698.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
Length = 518
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 229/364 (62%), Gaps = 12/364 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++++DI++A+ + G + PIQ+ + A++GRD+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLAEDILSAVEKAGFVEPSPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+K LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKIDVTNDKVQ------ALVIAPTRELAVQSQEELFRFGRGKKIKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ +P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K+P V + + + D + Y + EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKDPEHVKIA--AKELTTDLVDQYYVRVKENEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++ +
Sbjct: 233 LI-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 ILVATDVAARGLDISGVTQVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYL 351
Query: 456 KSIE 459
+ IE
Sbjct: 352 QIIE 355
>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
gi|169293913|gb|EDS76046.1| DEAD/DEAH box helicase [Clostridium spiroforme DSM 1552]
Length = 531
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 227/372 (61%), Gaps = 12/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +S++++ A+ G SK IQ+ + + G D IG+A+TGTGKTLAFG +L KI
Sbjct: 7 EQLGLSEEVLKAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLSKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALD 219
++ R P ++L+PTRELA Q+ +E + +CV+GG+ I Q+R++
Sbjct: 67 KPIDD-----RFPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VVGTPGRV+DL++R L V++VVLDEAD+ML++GF ED+E ILE++ RQ+
Sbjct: 122 KGVDIVVGTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI- 338
++FSATMP I+ + Y+ + + S Q A + + ++ + +LI
Sbjct: 182 ILFSATMPAGIKKIAQNYMHDDFK-HVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLID 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ K G I+F +TKR D + M +S YN E +HGD++Q+ R TL F+ G N L
Sbjct: 241 VANIKTG--IIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DV NV +I+YELP E++VHR GRTGRA K+G A I + ++ +K
Sbjct: 299 VATDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQ 358
Query: 458 IERDVGCRFTQL 469
IER T++
Sbjct: 359 IERVTKSTITKV 370
>gi|400536166|ref|ZP_10799701.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
gi|400330248|gb|EJO87746.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
Length = 567
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 235/388 (60%), Gaps = 15/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S++ + L I+ ++ A+A G IQ A + M G D++G A+TGTGKT
Sbjct: 5 DSSTEAASTTFADLQINPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF IPIL KI + LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKIDVTSTATQ------ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ S Q+ L G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAE+V+
Sbjct: 119 GSSYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVD 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR +T KYL +PL V + A+ IS I +
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKITTKYLHDPLEVST--KAKTATAENISQRYIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E IVF +TK+ + +A + A+ ++ ++GDI Q QRERT+
Sbjct: 237 PRKMDALTRVL-EVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTV 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+A +DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 296 AALKDGSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLF 355
Query: 447 YTDQQARQVKSIERDVGCRFT--QLPRI 472
+ ++ +K+IE+ T +LP +
Sbjct: 356 VSPRERHLLKAIEKATRQTLTEAELPTV 383
>gi|420151175|ref|ZP_14658314.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
gi|394772388|gb|EJF51653.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
Length = 535
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 218/347 (62%), Gaps = 9/347 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+ +I +
Sbjct: 67 VTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPD 126
Query: 166 EK----HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E NP L++ PTREL+KQV + +A L T + +YGG Q+ AL
Sbjct: 127 EPGFDDLLNPNNPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQISALK 186
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P +R +
Sbjct: 187 KGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPSHRHT 246
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + +L K++++P + DQ + + + K ++ +++
Sbjct: 247 MLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKVEVLARIL 306
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ ++F +TKR A RL + A+ + LHGD+ Q RE+ L AFR+G+ ++L
Sbjct: 307 QADGR-GRAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNGKVDVL 365
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG G+A+
Sbjct: 366 VATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAV 412
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 229/364 (62%), Gaps = 12/364 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI H + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------HTEDQTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIE 459
+ IE
Sbjct: 352 QIIE 355
>gi|378551112|ref|ZP_09826328.1| hypothetical protein CCH26_13526 [Citricoccus sp. CH26A]
Length = 578
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 160/417 (38%), Positives = 243/417 (58%), Gaps = 21/417 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ ++ D+V ALA +GI+ FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L ++
Sbjct: 47 ADFNVRADMVEALAEKGITHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGLPLLQRV 106
Query: 162 IKFNEKHGRGR-----NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
I +E+ G R P LV+APTRELA QV + +A S+ +YGG Q
Sbjct: 107 IGPDEE-GFDRLAAPGAPQALVVAPTRELANQVAADITAAASKRSVRIATIYGGRAYEPQ 165
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L GV+ VVGTPGR+IDL+++ LNL V+ VVLDEAD+ML +GF DVE +L +P
Sbjct: 166 IEELQRGVEVVVGTPGRLIDLMRQRHLNLKLVKIVVLDEADEMLDLGFLPDVETLLSAVP 225
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----E 329
+ RQ+M+FSATMP + ++ +Y+ P + D+ GI+ I +Y +
Sbjct: 226 EVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDE----GITKKDIRQLVYRAHHMD 281
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSA 388
K ++ + + + GK I+FT+TKR A RL+ + K + +HGD+ Q RE+ L A
Sbjct: 282 KDELVARSLQAEGR-GKTIIFTRTKRTAARLSDELEKRGFAAGSIHGDLGQGAREQALRA 340
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FR + ++L+ATDVAARG+DV +V +I+++ P +T++HR GRTGRAG KG+A+ +
Sbjct: 341 FRGDKIDVLVATDVAARGIDVDDVTHVINFQCPEDEKTYLHRVGRTGRAGNKGTAVTLVD 400
Query: 449 DQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGY-GSMRDRQYADTGFD 504
+ + I + +G + P ++ D+G G G + Q G D
Sbjct: 401 WEDMPRWTLINKALGLDVPEPPE-TYSSSKHLFADLGIPKGTKGRLPRSQRTKAGLD 456
>gi|421501869|ref|ZP_15948826.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
gi|400347612|gb|EJO95965.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
Length = 560
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 231/375 (61%), Gaps = 15/375 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G DMIG+A+TGTGKT AF +P+L KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P ++ + VYGG P+ Q++AL
Sbjct: 69 DPAK------REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+E+I E +P++RQ
Sbjct: 123 RMGAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + + I + +K + + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT--QTVSRIEQAHLMIHADQKTNAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK + L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRF--TQLP 470
IER G + +LP
Sbjct: 360 IERVTGQKVGEVKLP 374
>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 560
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 231/375 (61%), Gaps = 15/375 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G DMIG+A+TGTGKT AF +P+L KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P ++ + VYGG P+ Q++AL
Sbjct: 69 DPAK------REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+E+I E +P++RQ
Sbjct: 123 RMGAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + + I + +K + + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT--QTVSRIEQAHLMIHADQKTNAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK + L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRF--TQLP 470
IER G + +LP
Sbjct: 360 IERVTGQKVGEVKLP 374
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 239/400 (59%), Gaps = 16/400 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + +K G LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISALCDKEKKKGVK----ALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGR++D I R L L + F++LDEAD+ML++GF ED+E I+E
Sbjct: 118 IKDIKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTS 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAPIKKLALNYMKKD--VEHIAILKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
N L+ATDVAARG+DV N+ +I+Y++P +E++VHR GRTGRA K+G+A + T ++
Sbjct: 295 TLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354
Query: 453 RQVKSIERDVGCRFT--QLPRIA--VEGGGD-MYNDMGGR 487
++ IER + + T +LP + +E D + ND+ +
Sbjct: 355 SSIRQIERIIKSKITKKELPTLEDILEKKYDNLLNDITSK 394
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 226/369 (61%), Gaps = 11/369 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S D++ + G PIQ+ + ++G+D+IG+A+TGTGKTLAFG +L KI K
Sbjct: 9 LGLSSDVLKGIEMMGYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFGSVLLSKIQK 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
G++ L+L+PTRELA Q+ +E +L + V+GG+ I Q++ L G
Sbjct: 69 ------EGKHVKALILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKRG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D VVGTPGRV DL++R L ++ + F+VLDEAD+ML++GF ED+E IL+ P N+Q+++
Sbjct: 123 ADIVVGTPGRVQDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQTVL 182
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I+ + + Y+++ + + S K A +S Y T K + +++ +
Sbjct: 183 FSATMPATIKKIASNYMQDDY-MHIQIKSKTKTASTVSQYYFETRPTNKFETLCRIL-DS 240
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ I+F +TKR D + +M K Y+ E +HGD+SQ+QR TL F+ G L+AT
Sbjct: 241 RQMENTIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVAT 300
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARG+DV N+ +I+YE+P E ++HR GRTGRA KKG A + T+++ + SI++
Sbjct: 301 DVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMSIQK 360
Query: 461 DVGCRFTQL 469
+L
Sbjct: 361 RTNSHIEKL 369
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 234/374 (62%), Gaps = 12/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L +S+D++ A+ G + PIQ + + G+D+IG+A+TGTGKT AF +PIL
Sbjct: 1 MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI K NE N LV++PTRELA Q ++E ++ + VYGG I Q++
Sbjct: 61 EKIDKSNE------NVQALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L VVGTPGR++D I+R+ L L VQ +VLDEAD+ML++GF +D+E I+++LP+
Sbjct: 115 SLKNHPQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMPP I+ + +++K+P V + + + D I + + + +EK ++ +
Sbjct: 175 RQTMLFSATMPPEIKRVGVQFMKDPKHVKI--KAKELTTDLIDQFYVRSRDFEKFDVMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ IVFT+TKR D +A + A+ YN +HGD++Q +R + ++ FR G+ +
Sbjct: 233 FFDVQSP-DLTIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARG+D+ +V + +Y++P +++VHR GRTGRAGK G ++ T + +
Sbjct: 292 ILVATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYL 351
Query: 456 KSIERDVGCRFTQL 469
+ IE+ R L
Sbjct: 352 REIEKLTKVRMLPL 365
>gi|406677544|ref|ZP_11084726.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
gi|404624557|gb|EKB21391.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
Length = 633
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 222/365 (60%), Gaps = 19/365 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L ++ ++ AL G + PIQ A + M G D++G+A+TGTGKT AF +P+L ++
Sbjct: 11 SELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRL 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRAL 218
N RN LVLAPTRELA QV + + P + +YGG Q RAL
Sbjct: 71 EAGN------RNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRAL 124
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+DLI+R L+LS ++ +VLDEAD+ML +GF +DV+ I+E+ P RQ
Sbjct: 125 RRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQ 184
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSIIG 335
+FSATMP IR + K+LK P + + K A ++ Y T +++ ++
Sbjct: 185 VALFSATMPEQIRRVAQKHLKQPKEIKIAS----KTATATTIRQRYWQVTGLHKLDAMTR 240
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E + +VF +TK A+ LA +A + + CE LHGDI Q RERT+ R G+
Sbjct: 241 LLEVESYEA--LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQL 298
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+ILIATDV ARGLDV + +++Y++P +E++VHR GRTGRAG+KG AIL ++ R
Sbjct: 299 DILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRM 358
Query: 455 VKSIE 459
+++IE
Sbjct: 359 LRAIE 363
>gi|378549072|ref|ZP_09824288.1| hypothetical protein CCH26_03255 [Citricoccus sp. CH26A]
Length = 631
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 237/403 (58%), Gaps = 10/403 (2%)
Query: 79 HAQSAVDDYVAYDDSSKDE---GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ 135
HAQ+ + + + E G S L I ++AA+ G PIQ + ++
Sbjct: 9 HAQAQAETDTPTETDALTETPAGPAFSTLGIDSRVLAAIEDLGYETPSPIQAETIPLLLE 68
Query: 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195
GRD++G A+TGTGKT AF +P L ++ + + +G P LVLAPTRELA QV + F
Sbjct: 69 GRDVVGLAQTGTGKTAAFAVPALSRLAELADVNGPANTPQILVLAPTRELALQVAEAFTT 128
Query: 196 SAPSLD---TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
A + + VYGG P Q+ L G VVGTPGRVID +++ +L+LS++Q++VLD
Sbjct: 129 YAKHIKGVTVLPVYGGAPYGPQLSGLRRGAQVVVGTPGRVIDHLQKGSLDLSDLQYMVLD 188
Query: 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
EAD+ML +GFAE+V+ IL P +Q+ +FSATMP I+ ++ KYL +P+ V V +
Sbjct: 189 EADEMLRMGFAEEVDQILSATPDQKQTALFSATMPRAIQRISGKYLNDPVEV-TVAAKNT 247
Query: 313 KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCE 371
+ + T ++ ++ L TE G I F +T+ + L + A+ +
Sbjct: 248 TAGNIRQRFLQVTHQWKLEAMTRILETEEHDG--VIAFVRTRNATEELTTKLNARGFRAA 305
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431
+ GD++Q+QRE+T+ R GR +IL+ATDVAARGLDV + +I+Y++P+ +E++VHR
Sbjct: 306 AISGDVAQNQREKTVENLRAGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRI 365
Query: 432 GRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV 474
GRTGRAG+ G A+L T ++ ++SIE+ Q+P +V
Sbjct: 366 GRTGRAGRSGDAVLFMTPREKYLLRSIEKATRQTVEQMPMPSV 408
>gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 438
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 154/382 (40%), Positives = 226/382 (59%), Gaps = 14/382 (3%)
Query: 94 SKDEGLDISKLDISQDIV----AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
S D + LD+S ++ AALAR G PIQ+ ++P +QGRD+I A+TG+GK
Sbjct: 5 SGDSTMSFDHLDLSPQLLPAFTAALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGK 64
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL----DTICV 205
TLA+ +P+L + E R LVL PTRELA QVE H+ A L +
Sbjct: 65 TLAYALPLLQQRCLAPETAPRVLG--ALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTA 122
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
GG+ I+ Q+ AL G D VV TPGR++DL+ NAL LSEV +VLDEAD++L +GF +
Sbjct: 123 TGGSSINPQLLALRGGADIVVATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAE 182
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
++ IL LP RQS++FSAT PP I SL + L++PL + +V D A I +IA
Sbjct: 183 LDRILALLPAQRQSVLFSATFPPGIASLAKRRLRDPLRITIVATPDA--APAIEQRAIAV 240
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRER 384
++ ++ L+ EH +VF ++ A+++A + K+ N +PLHG++SQ +RER
Sbjct: 241 DAGQRTQLLRHLLQEHG-WSHVLVFVASRHTAEKVAEKLTKTGINAQPLHGELSQGRRER 299
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
TL AF+ +L+ATD+A RG+D+ + +I+Y+LP ++ + HR GRT RAG G AI
Sbjct: 300 TLYAFKQREVQVLVATDLAGRGIDIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAI 359
Query: 445 LIYTDQQARQVKSIERDVGCRF 466
+ + Q + IE+ G R
Sbjct: 360 SFVSAESQPQWRLIEKRQGLRV 381
>gi|159903626|ref|YP_001550970.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9211]
Length = 604
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 220/361 (60%), Gaps = 13/361 (3%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S D++ L +G PIQKA M GRD++G+A+TGTGKT AF +PIL++I
Sbjct: 60 SDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILERI----- 114
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVD 223
R P LVLAPTRELA QV F A P + + VYGG+ Q+ AL GV
Sbjct: 115 -KQDTRAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINALRRGVQ 173
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D I++ ++++ +VLDEAD+ML +GF +D+E ILE+LP RQ + FS
Sbjct: 174 IVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKRQMIFFS 233
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP IR L+ +YL P + + + +K A I I K + +++ A
Sbjct: 234 ATMPSEIRRLSKQYLHEPAEITI--KAQKKEAQLIRQRYIVIQNSFKLEALKRVLETTAD 291
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G I+F +TK RL+ ++ A ++N L+GD+ Q+ RERT+ R G +IL+ATDV
Sbjct: 292 EG-VIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVATDV 350
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV + L+I+Y++P SE +VHR GRTGRAG+ G AIL + ++ + ++ER V
Sbjct: 351 AARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRERSFINNLERAV 410
Query: 463 G 463
G
Sbjct: 411 G 411
>gi|352081054|ref|ZP_08951932.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|351683095|gb|EHA66179.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
Length = 619
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 228/381 (59%), Gaps = 13/381 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D+ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I +
Sbjct: 18 LALHPDVQRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIER 77
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A P + +YGG Q+ +L
Sbjct: 78 ------RPGKPQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++F+VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + ++LK P+ V + S A+ Y + M++ ++ I E
Sbjct: 192 LFSATMPAPIRKIAQRHLKEPVEVT-IKSSTTTAANIHQRYWFVSGMHKLDALTR--ILE 248
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK+ + LA + A+ ++GDI+Q+QRER + +DG+ +IL+A
Sbjct: 249 AEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVA 308
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL + ++ + +IE
Sbjct: 309 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLHAIE 368
Query: 460 RDVGCRFTQLPRIAVEGGGDM 480
R Q+ +VE D+
Sbjct: 369 RATRQPIEQMQLPSVEVVNDV 389
>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 454
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 233/375 (62%), Gaps = 11/375 (2%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L ++ +I ALA GI++ F IQ+ L A+ G D+IG+ARTG GKTL FG+P++D++
Sbjct: 11 ELGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDRVF 70
Query: 163 ---KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT-IC-VYGGTPISHQMRA 217
+ E G R +++ PTREL QV ++ +A S + +C +YGG P Q+
Sbjct: 71 DDARIPEPDGTAR---AIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQ 127
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
LD GVD +VGTPGR+IDL +RN L LS V+ +VLDEAD+ML +GF D+E IL +P R
Sbjct: 128 LDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDER 187
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+M+FSATMP I +L ++ P+ + G+ + + + + +K S+I +
Sbjct: 188 QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIAR 247
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ + + G+ I+F +TKR A +A + + + +HGD+ Q RER+L+AFR+G +
Sbjct: 248 ILQANGR-GRTIIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVD 306
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARG+D+ +V +I++++P+ T+VHR GRTGRAG G A+ + + +
Sbjct: 307 VLVATDVAARGIDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGVAVTLVGWDETTKW 366
Query: 456 KSIERDVGCRFTQLP 470
K+I + ++P
Sbjct: 367 KAISDALDLDMAEIP 381
>gi|427419103|ref|ZP_18909286.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425761816|gb|EKV02669.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 565
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 224/372 (60%), Gaps = 13/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L +S+ ++ AL G PIQ + + G D+IG+A+TGTGKT AF +P+L ++
Sbjct: 10 SELSLSEPVIKALEGLGYESPTPIQAQTIPHVLAGVDLIGQAQTGTGKTAAFALPLLSRV 69
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+ R P LVL PTRELA QV + F A + + +YGG S Q+R L
Sbjct: 70 ------NIEQRLPHTLVLTPTRELAIQVAEAFQSYASHMKGFHVLPLYGGQSYSIQLRKL 123
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ V VVGTPGRV+D +KR L+LS +Q +VLDEAD+ML +GF +DVE +LE+ P +RQ
Sbjct: 124 ERSVHIVVGTPGRVMDHMKRGTLDLSALQCLVLDEADEMLRMGFIDDVEWVLEKTPASRQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSAT+P IR + ++L NP +++ S AD I S Y K + +++
Sbjct: 184 VALFSATLPKEIRHIAQRHLNNP--TEVLIKSKTSTADTIRQRYWMVSGYHKLDALTRIL 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
G IVF +T+ LA + A+ Y PL GDISQ QRERT+ + G+ +I+
Sbjct: 242 ETETFDG-MIVFVRTRLATVELAEKLEARGYETAPLSGDISQMQRERTVEQLKSGKLDIV 300
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +I+Y++P +ET+VHR GRTGRAG+ G AIL ++ R + +
Sbjct: 301 VATDVAARGLDVDRISHVINYDMPYDTETYVHRVGRTGRAGRNGEAILFVAPRERRLLHA 360
Query: 458 IERDVGCRFTQL 469
IER + +++
Sbjct: 361 IERATKQKISKM 372
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 213/347 (61%), Gaps = 13/347 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L +S++I+ A+ G ++ PIQ + +QG D+IG+A+TGTGKT AFGIPI+D I
Sbjct: 8 SDLGVSEEILRAVEDMGYTQPSPIQAQTIPLLLQGADVIGQAQTGTGKTAAFGIPIIDSI 67
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL 218
+ P L+L PTRELA QVE E + + + C+YGG I Q+R+L
Sbjct: 68 ------DPNSKKPQALILCPTRELAVQVEGEIVKLTKYNRKISSTCIYGGESIDRQIRSL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGR++D + R L+LS+V +VLDEAD+ML +GF +D+E IL +P RQ
Sbjct: 122 KKGVQIVVGTPGRIMDHMDRRTLDLSQVGIIVLDEADEMLDMGFRDDIEKILSSMPIERQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++ FSATMP I LT KY +P + ++ + + IS K +I +LI
Sbjct: 182 TVFFSATMPKPILELTRKYQTDPEIIKVL--RKELTVENISQLYFDVRSGLKTDLISRLI 239
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
H + ++F TKR D + + AK E LHGD+SQ+QR + ++ FR G ++L
Sbjct: 240 NLH-QYKLSVIFCNTKRVTDEVTEELTAKGIPAEALHGDLSQAQRTKVMNKFRKGHCSVL 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
+ATDVAARG+DV NV+ + +Y+LP E +VHR GRTGRAG+ G+AI
Sbjct: 299 VATDVAARGIDVENVEAVFNYDLPLDEENYVHRIGRTGRAGRSGTAI 345
>gi|392417671|ref|YP_006454276.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617447|gb|AFM18597.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 563
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 92 DSSKDEG-LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + + G L + L I ++ A+ G PIQ A + + G D++G A+TGTGKT
Sbjct: 5 DPAPEHGDLSFADLQIHPSVLQAVRDVGYESPSPIQAATIPAMLAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGG 208
AF IPIL KI R LVLAPTRELA QV + F L + + VYGG
Sbjct: 65 AAFAIPILSKI------DTSSRTTQALVLAPTRELALQVAEAFSRYGAHLQVNVLPVYGG 118
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+ Q+ L G VVGTPGRVID +++ L++S + ++VLDEAD+ML +GFAEDVE
Sbjct: 119 SSYGPQLAGLKRGAQVVVGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVER 178
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL P+ +Q +FSATMPP IR +T KYL +P+ V + S + A+ I+ I S
Sbjct: 179 ILADTPEYKQVALFSATMPPGIRKITAKYLHDPVEVTV--KSKSQTAENITQRYIQVSHQ 236
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +L+ E +G IVF +TK+ + +A + A+ + ++GDI Q+ RERT++
Sbjct: 237 RKMDALTRLL-EVEQGDAMIVFVRTKQATEEVAEKLKARGFAAAAINGDIPQAVRERTIN 295
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
+DG +IL+ATDVAARGLDV + +++Y++P+ E++VHR GRTGRAG+ G+A+L
Sbjct: 296 QLKDGSIDILVATDVAARGLDVERISHVVNYDIPHDPESYVHRIGRTGRAGRSGTALLFV 355
Query: 448 TDQQARQVKSIER 460
T ++ + SIER
Sbjct: 356 TPRERHLLNSIER 368
>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
Length = 561
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 229/379 (60%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L +L + + I+ A+A G + PIQ + M+GRD+IG+A+TGTGKT AFGIP
Sbjct: 2 ETLRFDELQLDERILRAVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + + L PTRELA QV E A + + +YGG I
Sbjct: 62 LLQKV------DPKSKKLQAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G ++GTPGRV+D ++R + + VV+DEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQIIIGTPGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P++RQ++MFSATMP I + +K+ K P+TV +V + ++ Y K +
Sbjct: 176 PEDRQTVMFSATMPQAIADIAHKFQKEPVTVKVV--KKELTVPKVTQYYYEVKPKTKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A +VF TK+ D L A+ + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 234 MCRLLDMYAP-KLSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +IL+ATDVAARG+DV +V+ + +Y+LP E +VHR GRTGRAG++G A ++
Sbjct: 293 RTDILVATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEV 352
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 353 YKLRDIQR--YCKTKIIPQ 369
>gi|423206263|ref|ZP_17192819.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
gi|404621815|gb|EKB18680.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
Length = 633
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 222/366 (60%), Gaps = 19/366 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L ++ ++ AL G + PIQ A + M G D++G+A+TGTGKT AF +P+L +
Sbjct: 10 FSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ N RN LVLAPTRELA QV + A P + +YGG Q RA
Sbjct: 70 LEAGN------RNTQILVLAPTRELALQVAEACQRYAHYMPDFHVLPIYGGASYETQTRA 123
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRV+DLI+R L+LS ++ +VLDEAD+ML +GF +DV+ I+E+ P R
Sbjct: 124 LRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTR 183
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSII 334
Q +FSATMP IR + K+LK P + + K A ++ Y T +++ ++
Sbjct: 184 QVALFSATMPEQIRRVAQKHLKQPKEIKIAS----KTATATTIRQRYWQVTGLHKLDAMT 239
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E + +VF +TK A+ LA +A + + CE LHGDI Q RERT+ R G+
Sbjct: 240 RLLEVESYEA--LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQ 297
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+ILIATDV ARGLDV + +++Y++P +E++VHR GRTGRAG+KG AIL ++ R
Sbjct: 298 LDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERR 357
Query: 454 QVKSIE 459
+++IE
Sbjct: 358 MLRAIE 363
>gi|374609445|ref|ZP_09682241.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
gi|373552414|gb|EHP79024.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
Length = 564
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 234/388 (60%), Gaps = 15/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D ++ L L I ++ A++ G IQ A + P M G D++G A+TGTGKT
Sbjct: 5 DPAANRADLTFDDLQIHPSVLRAISDVGYESPSAIQAATIPPMMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF +PIL KI N + LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAVPILSKIDPAN------KTTQALVLAPTRELALQVAEAFSRYGAHLPQINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ Q+ L G VVGTPGRVID +++ L+L+ + ++VLDEAD+ML +GFAEDVE
Sbjct: 119 GSSYGPQLAGLRRGAQVVVGTPGRVIDHLEKGTLDLTHLDYLVLDEADEMLQMGFAEDVE 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR +T KYL + + V + S A+ I+ I +
Sbjct: 179 RILADTPEYKQVALFSATMPPGIRKITKKYLHDAVEVSV--KSKTATAENITQRYIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +L+ E IVF +TK+ + +A + A+ + ++GDI+Q+QRERT+
Sbjct: 237 PRKMDALTRLL-EVEPFEAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIAQAQRERTI 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
++ +DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G A+L
Sbjct: 296 ASLKDGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGQALLF 355
Query: 447 YTDQQARQVKSIERDVGCRFT--QLPRI 472
+ ++ +KSIE+ + T +LP +
Sbjct: 356 VSPRERHMLKSIEKATRQQLTEAELPTV 383
>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
Length = 769
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 223/366 (60%), Gaps = 9/366 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S D++ ++ AL + G PIQ + M+G D++G A+TGTGKT AF +P+L
Sbjct: 4 FSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLLHH 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
+ K + G G CLV+APTRELA Q+ + F + SL + V+GG PI QMR L
Sbjct: 64 LCKLPDMPGPG-AVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMRDL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D +V TPGR+IDL+++ A++LS V+ +VLDEADQML +GF + I +P+ RQ
Sbjct: 123 HRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKERQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQL 337
++ FSATMP + L N++L NP V + +S A+ ++ + +K P ++ L
Sbjct: 183 TLFFSATMPSNVSGLANQFLTNPKKVSIAQES--TTAERVTQTMSHVNQAQKGPLLLVNL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADR-LAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E + +VFT+TK AD+ ++ M C +HG+ SQ+QRER L+AFR+G +
Sbjct: 241 QDESID--RALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKV 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATD+AARG+DVP V + +YE+PN E +VHR GRT RAG++G AI + + + +
Sbjct: 299 LVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLL 358
Query: 457 SIERDV 462
I+R +
Sbjct: 359 DIQRQI 364
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 226/379 (59%), Gaps = 13/379 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L +++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F+ G+ CLVL PTRELA QV E + + VYGG I Q++
Sbjct: 61 NN---FSSNDGK---VFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+M+ +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+MMFSATMP I++L KY+K+ + ++ Y + S+
Sbjct: 175 RQTMMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRI 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G +
Sbjct: 235 LDVEEP--SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILD 292
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
L+ATDVAARG+D+ NV +I+Y LP E++VHR GRTGRA + G A + T ++ +
Sbjct: 293 FLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPAL 352
Query: 456 KSIERDVGCRF--TQLPRI 472
K IE+ C+ +LP +
Sbjct: 353 KRIEKATRCKIKRKELPTV 371
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 220/378 (58%), Gaps = 13/378 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + ++LDI +I+ A+A G + PIQ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
IL K+ + + P +VL PTRELA QV E + A S+ + +YGG IS
Sbjct: 62 ILQKV------DPKLKKPQAIVLCPTRELAIQVADEIRKLAKYMSSVKILPIYGGQEISK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L GV ++GTPGR++D ++R + + VVLDEAD+ML +GF ED+E IL +
Sbjct: 116 QIRSLKAGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ+M+FSATMP I L Y +NP + ++ + I+ Y K +
Sbjct: 176 PEERQTMLFSATMPKPIMELARAYQQNPEIIKVI--RKELTVPNITQYYYEVRPKNKSEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ + +VF TK+ D L A + Y E LHGD+ Q+ R+R + FR G
Sbjct: 234 LSRLLDIY-DPKLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +IL+ATDVAARG+DV +VD + +Y+LP E +VHR GRTGRAG+ G A ++
Sbjct: 293 KTDILVATDVAARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREV 352
Query: 453 RQVKSIERDVGCRFTQLP 470
++K I R + P
Sbjct: 353 YKLKDIRRYCKAKIKAQP 370
>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
B565]
gi|423201948|ref|ZP_17188527.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|423210052|ref|ZP_17196606.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
gi|404615658|gb|EKB12619.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|404615940|gb|EKB12898.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
Length = 633
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 222/365 (60%), Gaps = 19/365 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L ++ ++ AL G + PIQ A + M G D++G+A+TGTGKT AF +P+L ++
Sbjct: 11 SELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRL 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRAL 218
N RN LVLAPTRELA QV + + P + +YGG Q RAL
Sbjct: 71 EAGN------RNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRAL 124
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+DLI+R L+LS ++ +VLDEAD+ML +GF +DV+ I+E+ P RQ
Sbjct: 125 RRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQ 184
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSIIG 335
+FSATMP IR + K+LK P + + K A ++ Y T +++ ++
Sbjct: 185 VALFSATMPEQIRRVAQKHLKQPKEIKIAS----KTATATTIRQRYWQVTGLHKLDAMTR 240
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E + +VF +TK A+ LA +A + + CE LHGDI Q RERT+ R G+
Sbjct: 241 LLEVESYEA--LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQL 298
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+ILIATDV ARGLDV + +++Y++P +E++VHR GRTGRAG+KG AIL ++ R
Sbjct: 299 DILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRM 358
Query: 455 VKSIE 459
+++IE
Sbjct: 359 LRAIE 363
>gi|407648258|ref|YP_006812017.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311142|gb|AFU05043.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 593
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 230/379 (60%), Gaps = 13/379 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D V D+ ++G + L I I+AA+A G PIQ A + P + G D++G A+T
Sbjct: 7 DSVPGDNDRDNDGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADVVGLAQT 66
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDT 202
GTGKT AF IPIL + G+ P LVLAPTRELA QV + F A P L
Sbjct: 67 GTGKTAAFAIPILMGL------DTSGKLPQSLVLAPTRELAIQVAEAFGRYATHIPGLHV 120
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+ +YGG Q+ L G VVGTPGRVID +++ L+LS+++++VLDEAD+ML +GF
Sbjct: 121 LPIYGGQAYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLKYLVLDEADEMLKMGF 180
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
EDVE IL+ P +Q +FSATMP IR ++ +YL +P V++ S A I+
Sbjct: 181 QEDVERILKDTPAGKQVALFSATMPAAIRKISKQYLNDP--VEITVKSKTSTATNITQRW 238
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQ 381
+ S K + +++ E I+F +TK+ + LA + A+ ++ ++GDI+Q+Q
Sbjct: 239 VQVSHQRKLDALTRIL-EVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQ 297
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RERT+ + G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G
Sbjct: 298 RERTIGHLKSGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSG 357
Query: 442 SAILIYTDQQARQVKSIER 460
A+L ++ +KSIER
Sbjct: 358 EALLFVAPRERHLLKSIER 376
>gi|452960046|gb|EME65376.1| cold-shock DEAD-box protein [Rhodococcus ruber BKS 20-38]
Length = 633
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/378 (39%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LDI ++ AL+ G PIQ A + P ++GRD++G A+TGTGKT AF +PIL +I
Sbjct: 14 ADLDIDARVLQALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRI 73
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
++ P L+LAPTRELA QV + F + + P L + +YGG Q+ L
Sbjct: 74 DTTVKR------PQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGL 127
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +VGTPGRVID + + L++SE++F+VLDEAD+ML++GF EDVE IL P+++Q
Sbjct: 128 RRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESKQ 187
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSATMP IR L+ +YL +P V++ S + I+ + S K + +++
Sbjct: 188 VALFSATMPGAIRRLSKQYLHDP--VEITVKSKTTTSANITQRWVLVSHQRKLDALTRIL 245
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I+F +TK+ + LA + A+ ++ ++GDI Q+QRERT+ + G +IL
Sbjct: 246 -EVEQFEAMIIFVRTKQATEDLAERLRARGFSASAINGDIVQAQRERTIGQLKSGALDIL 304
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G A+L ++ +K+
Sbjct: 305 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGDALLFVAPRERHLLKA 364
Query: 458 IERDVGCRFTQLPRIAVE 475
IER T++ +VE
Sbjct: 365 IERATRQPLTEIQLPSVE 382
>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 544
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 223/350 (63%), Gaps = 21/350 (6%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----- 163
DIVAALA GI FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L++++
Sbjct: 33 DIVAALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLLNRVVAPGEEG 92
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYG 221
F++ G+ P +V+ PTRELA QV K E S S+ + +YGG Q+ AL+ G
Sbjct: 93 FDQLPAPGK-PQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYEPQIAALNRG 151
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V+ VVGTPGR+ID++K+ L L +VLDEAD+ML +GF DVE IL + P RQ M+
Sbjct: 152 VEVVVGTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQTPAVRQMML 211
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----EKPSIIGQ 336
FSATMP + ++ +Y+ P + D G ++ +I +Y +K +I +
Sbjct: 212 FSATMPGAVVAMARRYMNQPTHIRAQDPEDL----GSTVKNITQVVYRAHPLDKVEMIAR 267
Query: 337 LITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
++ A+G G ++FT+TKR+A ++A + + + LHGD+ Q RE+ L AFR+G+
Sbjct: 268 IL--QARGRGLSVIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNGKV 325
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
++L+ATDVAARG+DV NV +I+Y++P + ++HRTGRTGRAG KG+A+
Sbjct: 326 DVLVATDVAARGIDVENVTHVINYQVPEDDKVYLHRTGRTGRAGNKGTAV 375
>gi|379753312|ref|YP_005341984.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-02]
gi|379760733|ref|YP_005347130.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-64]
gi|406029614|ref|YP_006728505.1| Cold-shock DEAD box protein A -like protein [Mycobacterium indicus
pranii MTCC 9506]
gi|378803528|gb|AFC47663.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-02]
gi|378808675|gb|AFC52809.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-64]
gi|405128161|gb|AFS13416.1| Cold-shock DEAD box protein A -like protein [Mycobacterium indicus
pranii MTCC 9506]
Length = 567
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 232/389 (59%), Gaps = 13/389 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S+ + L I ++ A+A G IQ A + M G D++G A+TGTGKT
Sbjct: 5 DSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF IPIL KI + LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKIDVTSTATQ------ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ S Q+ L G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAE+V+
Sbjct: 119 GSSYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVD 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR LT KYL +PL V + A+ IS I +
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVST--KAKTATAENISQRYIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E IVF +TK+ + +A + A+ ++ ++GDI Q QRERT+
Sbjct: 237 PRKMDALTRVL-EVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTV 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+A +DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 296 AALKDGSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLF 355
Query: 447 YTDQQARQVKSIERDVGCRFTQLPRIAVE 475
+ ++ +K+IE+ T+ VE
Sbjct: 356 VSPRERHLLKAIEKATRQTLTETALPTVE 384
>gi|67605637|ref|XP_666695.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
gi|54657739|gb|EAL36467.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
Length = 678
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 242/396 (61%), Gaps = 29/396 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 16 IDRFLLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 75
Query: 161 IIK---FN-EKHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQ 214
++K F+ KHGR PL LVL PTRELA+QV EF + VYGG+P Q
Sbjct: 76 LLKKGKFDPNKHGR--RPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQ 133
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 134 IQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVR 193
Query: 275 -----------QNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLV-----GDSDQKLA- 315
QN+ Q ++FSAT+PPW++++ + + + +TVD+ G+ + + A
Sbjct: 194 KETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAA 253
Query: 316 -DGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ L
Sbjct: 254 RSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVL 313
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HGDI Q+QRE L AF++GR+ L+ATDVAARGL + +V ++I P +T++HR+GR
Sbjct: 314 HGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGR 373
Query: 434 TGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
TGRAGK G+AI+ + SIE+ F ++
Sbjct: 374 TGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRI 409
>gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare ATCC 13950]
gi|379746016|ref|YP_005336837.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare ATCC 13950]
gi|378798380|gb|AFC42516.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare ATCC 13950]
Length = 567
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 232/389 (59%), Gaps = 13/389 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S+ + L I ++ A+A G IQ A + M G D++G A+TGTGKT
Sbjct: 5 DSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF IPIL KI + LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKIDVTSTATQ------ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ S Q+ L G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAE+V+
Sbjct: 119 GSSYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVD 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR LT KYL +PL V + A+ IS I +
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVS--TKAKTATAENISQRYIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E IVF +TK+ + +A + A+ ++ ++GDI Q QRERT+
Sbjct: 237 PRKMDALTRVL-EVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTV 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+A +DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 296 AALKDGSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLF 355
Query: 447 YTDQQARQVKSIERDVGCRFTQLPRIAVE 475
+ ++ +K+IE+ T+ VE
Sbjct: 356 VSPRERHLLKAIEKATRQTLTETALPTVE 384
>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 540
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/363 (41%), Positives = 223/363 (61%), Gaps = 9/363 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L +++ IV AL PIQ + + G+D+IG A+TGTGKT AFG+PILD +
Sbjct: 5 SELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILDHL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ N + R+ L+L+PTREL+ Q+ + L T GG P+ Q+RAL
Sbjct: 65 SR-NPRRIEPRSCRVLILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQIRALQ 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD +V TPGR++DL++ NAL L V+ VLDEADQML +GF ++ I+ RLP R S
Sbjct: 124 RGVDVLVATPGRLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPHKRHS 183
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI- 338
+ FSATMP I L L+NP+TV + + K AD + I K ++ +++
Sbjct: 184 LFFSATMPSAIADLAASMLRNPVTVAVTPVA--KTADRVDQRVIFVEKPAKAKMLAEVLS 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
TE + +VFT+TK AD++ +A++ + E +HG+ SQ+QR+R L+AFR+G L
Sbjct: 242 TEEVD--RALVFTRTKHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATD+AARG+DV V +I+Y+LPN E++VHR GRT RAG++G AI ++ ++S
Sbjct: 300 VATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERAYLRS 359
Query: 458 IER 460
IE+
Sbjct: 360 IEK 362
>gi|444432231|ref|ZP_21227390.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
gi|443887060|dbj|GAC69111.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
Length = 588
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 230/385 (59%), Gaps = 17/385 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + G LD+ + A+ G PIQ A + P + GRD++G A+TGTGKT
Sbjct: 3 DTAEPSPGGSFDDLDLDPRVRQAITDVGYETPSPIQAATIPPLLDGRDVVGLAQTGTGKT 62
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF-----HESAPSLDTICV 205
AF +PIL ++ + P L+LAPTRELA QV + F H S + + +
Sbjct: 63 AAFAVPILSRL------DAGAKKPQALILAPTRELALQVSEAFGRYSSHMS--DVRVLPI 114
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q+ L G +VGTPGRVID + R L++SE+ F+VLDEAD+ML++GFAED
Sbjct: 115 YGGQSYSVQLSGLRRGAQVIVGTPGRVIDHLDRGTLDISELGFLVLDEADEMLTMGFAED 174
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE IL P ++Q +FSATMPP I L KYLKNP + + S A I+ I
Sbjct: 175 VERILAETPDSKQVALFSATMPPAIGRLAKKYLKNPDEITV--KSKTATAQNITQRYIQV 232
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
S K + + + E IVF +TK+ + LA + A+ ++ ++GD++Q+QRER
Sbjct: 233 SHQRKLDALTRFL-EVETFDAMIVFVRTKQATEELAEKLRARGFSAVAINGDLAQAQRER 291
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
T++ ++G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+
Sbjct: 292 TINQLKNGAIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNAL 351
Query: 445 LIYTDQQARQVKSIERDVGCRFTQL 469
L + ++ +++IER T++
Sbjct: 352 LFVSPRERHLLRAIERATRQSLTEI 376
>gi|429332306|ref|ZP_19213035.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida CSV86]
gi|428762992|gb|EKX85178.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida CSV86]
Length = 555
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 244/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD+ IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL++I
Sbjct: 9 AALDLHPSIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P++RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L+ P V + S + I + +K S + +L+
Sbjct: 183 TVLFSATLPASIRAIAERHLREPKHVKI--QSKTQTVTAIEQAHLMVHADQKVSAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + + +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPNAQAVLDARIKKLTNSLAPLVADAEATHGDLLDRLTADIG 414
>gi|375085825|ref|ZP_09732447.1| hypothetical protein HMPREF9454_01058 [Megamonas funiformis YIT
11815]
gi|374566310|gb|EHR37555.1| hypothetical protein HMPREF9454_01058 [Megamonas funiformis YIT
11815]
Length = 529
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 18/374 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ ++ A+ G + PIQ + A++G D+IG+A+TGTGKT AFGIP +++I
Sbjct: 11 MQLSKKVLNAVRDMGFEEPSPIQAQTIPLALEGHDVIGQAQTGTGKTAAFGIPTIEQI-- 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+EK+ + LVL PTRELA Q+ +EF++ + T+ VYGG I Q+RAL +G
Sbjct: 69 -DEKN---KYIQALVLTPTRELAIQIAEEFNKIGKYKRVKTLPVYGGQMIDRQIRALRFG 124
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQS 279
V VVGTPGR+ID I+RN + L V+ ++LDEAD+ML +GF ED+E I+ + Q NRQ+
Sbjct: 125 VKVVVGTPGRLIDHIRRNTIKLDHVKMLILDEADEMLDMGFIEDIEEIMSNVAQGENRQT 184
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I L Y+ NP V ++ + LY +E +
Sbjct: 185 LLFSATMPAPIEKLARSYMHNPQKV-MISREQLTVPSVDQLYFETRDKFEGLC----RVL 239
Query: 340 EHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ GK I+F +TK++ D L A + Y LHGD+SQ+QR+R + FR+G+ ILI
Sbjct: 240 DIEDSGKYIIFCRTKKNVDDLQASLQVRGYMAGSLHGDMSQAQRDRVMRRFREGKLEILI 299
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+D+ ++ +I++++P E++VHR GRTGRAG+ G A+ ++ RQ+K I
Sbjct: 300 ATDVAARGIDIDDISHVINFDIPQDHESYVHRIGRTGRAGRTGIAVTFIEPKEYRQLKLI 359
Query: 459 ERDVGCRFT--QLP 470
ER R +LP
Sbjct: 360 ERMTKSRMIRGELP 373
>gi|383755140|ref|YP_005434043.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367192|dbj|BAL84020.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 526
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 168/473 (35%), Positives = 265/473 (56%), Gaps = 55/473 (11%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K E + ++++S+ ++ AL G + PIQ + ++G D+IG+A+TGTGKT AFG
Sbjct: 2 KQELKNFGEIELSRKVLQALREMGFEEPSPIQAQTIPLTLEGHDVIGQAQTGTGKTAAFG 61
Query: 155 IPILDKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPI 211
IP ++KI KF++ L+L PTRELA Q +E ++ + T+ +YGG I
Sbjct: 62 IPTVEKIAEKFHKVQ-------ALILTPTRELAIQTAEELNKIGKFKRVRTLPIYGGQSI 114
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+R+L GV AVVGTPGR++D + R L+L VQ +VLDEAD+ML +GF +D+E I++
Sbjct: 115 DRQIRSLKRGVHAVVGTPGRLLDHLNRGTLDLENVQTLVLDEADEMLDMGFIDDIENIIK 174
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
++P RQ+++FSATMP I L+ +Y+++P V + ++ +++ I YE
Sbjct: 175 QIPDGRQTLLFSATMPGPIEKLSRRYMEHPQRVTITKEN-------LTVPLIDQLYYETR 227
Query: 332 SIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
L + + + GK I+F +TKR D L ++ A+ Y+ LHGD+SQ QR+R +
Sbjct: 228 EKFEGLCRVLDVEETGKLIIFCRTKRAVDDLTASLEARGYSAGGLHGDLSQIQRDRVMKR 287
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FR+GR +ILIATDVAARG+D+ ++ +I+Y++P E++VHR GRTGRAG+KG A+
Sbjct: 288 FREGRIDILIATDVAARGIDIDDITHVINYDIPQDHESYVHRIGRTGRAGRKGVAMTFIE 347
Query: 449 DQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYN---DMGGRSGYGSMRDRQYAD----- 500
++ RQ++ I + T++ R + D+ D+ +++ Y D
Sbjct: 348 PKEYRQLRLI---MKLAHTKIQRKELPTASDLLERQKDLVQERLVKTLQQNHYDDYHEII 404
Query: 501 ----------------------TGFDRSSRMGDSGFGRSGGYRSPGSGRYGGN 531
GF D+GFG +GG +PG R N
Sbjct: 405 SDVAAEGFDMVDIAAAALKLSLEGFKDEKSDADNGFGDTGG--APGMVRLFFN 455
>gi|337290208|ref|YP_004629229.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
gi|334698514|gb|AEG83310.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
Length = 441
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 221/366 (60%), Gaps = 4/366 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD++
Sbjct: 11 AELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDRV 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ P LV+ PTRELA+QV ++ +A + VYGG P Q+ LD
Sbjct: 71 FDAADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGGRPYEEQIHVLD 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q+
Sbjct: 131 KGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEKLLGALTHQHQT 190
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 191 LLFSATMPGPVLTLARTFMLRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARALQ 250
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H +G K I+FT+TKR A LA +A + + +HGD+ Q+ RE +LS FRD R +IL+
Sbjct: 251 AHERG-KTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLSMFRDSRVDILV 309
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ +V +I+Y+ P+ T+VHR GRTGRAG G+AI + + + K I
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAITLVGYDELTKWKII 369
Query: 459 ERDVGC 464
++G
Sbjct: 370 SDELGL 375
>gi|387874673|ref|YP_006304977.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. MOTT36Y]
gi|443304605|ref|ZP_21034393.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. H4Y]
gi|386788131|gb|AFJ34250.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. MOTT36Y]
gi|442766169|gb|ELR84163.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. H4Y]
Length = 567
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 232/389 (59%), Gaps = 13/389 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S+ + L I ++ A+A G IQ A + M G D++G A+TGTGKT
Sbjct: 5 DSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF IPIL KI + LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKIDVTSTATQ------ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ S Q+ L G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAE+V+
Sbjct: 119 GSSYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVD 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR LT KYL +PL V + A+ IS I +
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVST--KAKTATAENISQRYIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E IVF +TK+ + +A + A+ ++ ++GDI Q QRERT+
Sbjct: 237 PRKMDALTRVL-EVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTV 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+A +DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 296 AALKDGSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLF 355
Query: 447 YTDQQARQVKSIERDVGCRFTQLPRIAVE 475
+ ++ +K+IE+ T+ VE
Sbjct: 356 VSPRERHLLKAIEKATRQTLTETALPTVE 384
>gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091]
gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
Length = 583
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 227/384 (59%), Gaps = 25/384 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L+IS +I A+A G + PIQ + + +D+ G+A+TGTGKT AFGIP
Sbjct: 2 EKLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISH 213
+L+ I N ++L PTRELA QV +E + + P +D + VYGG PI
Sbjct: 62 LLENI------DSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRV+D I R L+L+ ++ V+LDEAD+ML +GF ED+E ILE +
Sbjct: 116 QIKALQKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDI 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG------DSDQKLADGISLYSIATSM 327
P RQ ++FSAT+P I L +Y NP V + D +QK + + M
Sbjct: 176 PYERQFLLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQK------YFEVKEDM 229
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTL 386
K ++ +L+ H +VF TKR D+L +H + Y + LHGD++Q+QR+R +
Sbjct: 230 --KLELLSRLLDLH-DFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVM 286
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
S F+ G IL+ATDVAARG+DV V+ + ++++PN +E +VHR GRTGRAGK G A
Sbjct: 287 SKFKKGNIEILVATDVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSF 346
Query: 447 YTDQQARQVKSIERDVGCRFTQLP 470
+ ++ Q++ I+R + Q P
Sbjct: 347 VSGREIYQLRDIQRYAKTKIEQAP 370
>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
Length = 732
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 239/398 (60%), Gaps = 13/398 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + ++ A+ + G PIQ + M+G+D++G A+TGTGKT AF +PIL +I K
Sbjct: 107 LGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILARIDK 166
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRALDY 220
R+P LVLAPTRE A QV F A L+ + +YGG Q+ L
Sbjct: 167 ------SVRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRR 220
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR+ID +++ +L++S ++F+VLDEAD+ML++GF EDVE ILE P +Q
Sbjct: 221 GAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVA 280
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L+ +YL NP ++ S+ + I+ + + K + +++ E
Sbjct: 281 LFSATMPNGIRRLSKQYLNNP--AEITVKSETRTNTNITQRFLNVAHRNKMDALTRIL-E 337
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ I+F +TK + + +A + A+ ++ ++GDI+Q+QRERT+ +DGR +IL+A
Sbjct: 338 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + ++++++PN +E++VHR GRTGRAG+ G AIL T ++ R ++SIE
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 460 RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQ 497
R ++ V+ D S S+ D+Q
Sbjct: 458 RATNAPLHEMELPTVDQVNDFRKVKFADSITKSLEDKQ 495
>gi|397653450|ref|YP_006494133.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
gi|393402406|dbj|BAM26898.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
Length = 441
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 221/366 (60%), Gaps = 4/366 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD++
Sbjct: 11 AELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDRV 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ P LV+ PTRELA+QV ++ +A + VYGG P Q+ LD
Sbjct: 71 FDAADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGGRPYEEQIHVLD 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q+
Sbjct: 131 KGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEKLLGALTHQHQT 190
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 191 LLFSATMPGPVLTLARTFMLRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARALQ 250
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H +G K I+FT+TKR A LA +A + + +HGD+ Q+ RE +LS FRD R +IL+
Sbjct: 251 AHERG-KTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLSMFRDSRVDILV 309
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ +V +I+Y+ P+ T+VHR GRTGRAG G+AI + + + K I
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAITLVGYDELTKWKII 369
Query: 459 ERDVGC 464
++G
Sbjct: 370 SDELGL 375
>gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase [Pseudomonas mendocina NK-01]
gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
mendocina NK-01]
Length = 560
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 231/375 (61%), Gaps = 15/375 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G DMIG+A+TGTGKT AF +P+L KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P ++ + VYGG P+ Q++A+
Sbjct: 69 DPAK------REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+E+I E +P++RQ
Sbjct: 123 RQGAQIIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + + I + +K + + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT--QTVSRIEQAHLMIHADQKTNAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK + L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + + ++P E++VHR GRTGRAG+ G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRF--TQLP 470
IER G + +LP
Sbjct: 360 IERVTGQKVGEVKLP 374
>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 561
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 226/365 (61%), Gaps = 12/365 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L I ++ A+A G PIQ A + ++G D++G A+TGTGKT AF IPIL
Sbjct: 13 LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPIL 72
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMR 216
KI RN LVLAPTRELA QV + F L + + +YGG+ Q+
Sbjct: 73 SKI------DTESRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLA 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G VVGTPGRVID +++ +L+LS + ++VLDEAD+ML +GFAEDVE IL P+
Sbjct: 127 GLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEY 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+Q +FSATMPP I+ +T KYL +P+ V + S + A+ I+ S K + +
Sbjct: 187 KQVALFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAENITQRYFLVSYPRKMDALTR 244
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E +G IVF +TK+ + +A + A+ + ++GDI Q+ RERT++ +DG +
Sbjct: 245 LL-ETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTID 303
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLDV + ++++++P+ E++VHR GRTGRAG+ G+A+L T ++ +
Sbjct: 304 ILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLL 363
Query: 456 KSIER 460
+IER
Sbjct: 364 GAIER 368
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R+ L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R+ L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 226/375 (60%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRQELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
Length = 523
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 233/402 (57%), Gaps = 12/402 (2%)
Query: 69 LDFKSSIAWQHAQSAVD-DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQK 127
++ ++ + + VD D +D + ++ S + +IVAALA +GI FPIQ
Sbjct: 1 MNSETDLEYPQPNQEVDADITGVNDLNANQDKTFSDFGVEPEIVAALADKGIIHPFPIQA 60
Query: 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPT 182
L A++ D+IG+A+TGTGKTL F IPIL II ++E G P LVL PT
Sbjct: 61 LTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGDEGWDELPSPG-APQALVLLPT 119
Query: 183 RELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
RELAKQV E +A + +YGG Q+++L GV+ VVGTPGR+IDL+K
Sbjct: 120 RELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKDGVEVVVGTPGRLIDLMKHGE 179
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
L L EV+ +VLDEAD+ML +GF DVEV++ P R +M+FSATMP + +L +Y+
Sbjct: 180 LQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTMLFSATMPGPVVALARRYMYQ 239
Query: 301 PLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
P + SD K + ++ K ++ +++ + G I+FT+TKR R
Sbjct: 240 PTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEVVARILQAKNR-GLTIIFTRTKRSCQR 298
Query: 360 LAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
LA + + + +HGD++QS RER L AFR G+ ++L+ATDVAARG+DV +V +I++
Sbjct: 299 LADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDVLVATDVAARGIDVDDVTHVINF 358
Query: 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
E P +T++HR GRT RAG G+A+ + + + I R
Sbjct: 359 ECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESVTRWRVINR 400
>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
Length = 507
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 228/369 (61%), Gaps = 12/369 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++S +++ ++ R G + PIQ+A + A+ G+D+IG+A+TGTGKT AFG+P+L+KI
Sbjct: 6 LELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPMLEKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
N + LV+APTRELA Q ++E + + VYGG I Q+R L
Sbjct: 66 TNHQLQ------GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDR 119
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P RQ+++
Sbjct: 120 PHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLL 179
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMPP I+++ K++K P V + + + AD I Y + + YEK I+ +L+
Sbjct: 180 FSATMPPAIKNIGVKFMKEPEHVQI--KAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQ 237
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G+ +IL+AT
Sbjct: 238 TP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVAT 296
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + + IE
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVIEN 356
Query: 461 DVGCRFTQL 469
R T +
Sbjct: 357 LTKKRMTPM 365
>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
Length = 523
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 233/402 (57%), Gaps = 12/402 (2%)
Query: 69 LDFKSSIAWQHAQSAVD-DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQK 127
++ ++ + + VD D +D + ++ S + +IVAALA +GI FPIQ
Sbjct: 1 MNSETDLEYPQPNQEVDADITGVNDLNANQDKTFSDFGVEPEIVAALADKGIIHPFPIQA 60
Query: 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPT 182
L A++ D+IG+A+TGTGKTL F IPIL II ++E G P LVL PT
Sbjct: 61 LTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGDEGWDELPSPG-APQALVLLPT 119
Query: 183 RELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
RELAKQV E +A + +YGG Q+++L GV+ VVGTPGR+IDL+K
Sbjct: 120 RELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKDGVEVVVGTPGRLIDLMKHGE 179
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
L L EV+ +VLDEAD+ML +GF DVEV++ P R +M+FSATMP + +L +Y+
Sbjct: 180 LQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTMLFSATMPGPVVALARRYMYQ 239
Query: 301 PLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
P + SD K + ++ K ++ +++ + G I+FT+TKR R
Sbjct: 240 PTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEVVARILQAKNR-GLTIIFTRTKRSCQR 298
Query: 360 LAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHY 418
LA + + + +HGD++QS RER L AFR G+ ++L+ATDVAARG+DV +V +I++
Sbjct: 299 LADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDVLVATDVAARGIDVDDVTHVINF 358
Query: 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
E P +T++HR GRT RAG G+A+ + + + I R
Sbjct: 359 ECPEDEKTYIHRIGRTARAGHSGTAVTFVDWESVTRWRVINR 400
>gi|357127458|ref|XP_003565397.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 14-like
[Brachypodium distachyon]
Length = 655
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/447 (35%), Positives = 254/447 (56%), Gaps = 35/447 (7%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--ILDKIIKFNE 166
+I+ + + G S PIQ ++GRD++ A+TG+GKTL + +P IL K ++ N
Sbjct: 165 EILREVQQAGFSAPSPIQAQSWPITLKGRDIVAVAKTGSGKTLGYLLPGFILVKNLRNNS 224
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ G P LVL+PTRELA Q++ E F S+ + + C+YGG P Q+R L+ G D
Sbjct: 225 RDG----PTVLVLSPTRELATQIQDEAVKFGRSS-RISSTCLYGGAPKGPQLRDLERGAD 279
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++++ RQ++MF+
Sbjct: 280 IVVATPGRLNDILEMRKVSLHQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFT 339
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHA 342
AT P +R + + L NP+ V+ +G++DQ +A+ I+ Y S EK + Q++
Sbjct: 340 ATWPKEVRKIASDLLTNPVQVN-IGNTDQLVANKSITQYVEVISPMEKQRRLDQILRSQE 398
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G + I+F TKR D+L+ +++ Y +HGD SQ++R+ LS FR+GR IL+ATDV
Sbjct: 399 PGSRIIIFCSTKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRNGRCPILVATDV 458
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARGLDV ++ ++++Y+ P E +VHR GRTGRAG G A + DQ ++ +
Sbjct: 459 AARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFCDQDSKYASDL---- 514
Query: 463 GCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRS 522
++ A + DM R GYGS R++A + + +G G +
Sbjct: 515 ----VKILEGANQSVSQQLRDMASRGGYGSRPPRRWASS---------NDSYGGQGSF-- 559
Query: 523 PGSGRYGGNNSSYSGQGGGSSSGG-FG 548
G + + SS+ SSSG FG
Sbjct: 560 ---GSHSRDGSSFQSSAYNSSSGNTFG 583
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 234/373 (62%), Gaps = 23/373 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L++S++I+ A+ G + PIQ + +QG+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFEELNLSKEILKAIEELGYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
L++I + L+L PTRELA QV +E + + ++ + +YGG I
Sbjct: 62 TLERI------DPSKKTIQALILCPTRELAIQVSEELKKLSKYKKAIGILPIYGGQSIER 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+++L GV+ ++GTPGR ID I+R L L +++ +LDEAD+ML++GF ED+E IL++
Sbjct: 116 QIQSLKKGVNIIIGTPGRCIDHIERGTLKLEDIKLFILDEADEMLNMGFIEDIEFILDKT 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---- 329
P+++Q+++FSATMP I LT KYLKNP + +V +++ +I +E
Sbjct: 176 PKDKQTLLFSATMPDPILKLTKKYLKNPEHIKVVHKE-------LTVPTIEQIYFEVKEA 228
Query: 330 -KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K I+ +L+ + +VF TK+ D + ++ A+ Y + LHGD+ Q+QR+R ++
Sbjct: 229 HKIEILSRLLDIY-NPKLALVFCNTKKKVDEVVSSLQARGYLADALHGDMKQNQRDRVMA 287
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G ++L+ATDVAARG+DV +V+++ +Y++P E +VHR GRTGRAG++G A
Sbjct: 288 KFRSGTIDVLVATDVAARGIDVEDVEIVFNYDVPQDEEYYVHRIGRTGRAGREGKAFTFV 347
Query: 448 TDQQARQVKSIER 460
+ + +++ I+R
Sbjct: 348 SGKDIYKLRDIQR 360
>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase [Xanthobacter autotrophicus Py2]
gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
Py2]
Length = 559
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 184/509 (36%), Positives = 272/509 (53%), Gaps = 54/509 (10%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L +++ IV AL PIQ + + GRD+IG A+TGTGKT AF +PILD++
Sbjct: 40 SNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILDRL 99
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
++ + ++ LVL+PTREL+ Q+ + F + ++ GG P+ Q+RAL
Sbjct: 100 VRHPHR-PEPKSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALS 158
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD +V TPGR+IDL++ +A+ L +V+ +VLDEADQML +GF + I+ RLP R S
Sbjct: 159 RGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHS 218
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI- 338
+ FSATMP I L L++P+ V + + K AD + I K ++ +++
Sbjct: 219 LFFSATMPHAIAELAGSMLRDPVRVAVTPVA--KTADRVEQRVILVDKANKGQLLAEVLS 276
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
TE + +VF++TK AD++ +AK+ E +HG+ SQ+QR+R L+AFR+G+ L
Sbjct: 277 TEDID--RALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTL 334
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATD+AARG+DV V +I+++LPN E++VHR GRT RAG++G AI ++ ++S
Sbjct: 335 IATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLRS 394
Query: 458 IERDVGCRFTQLPRIAVEGGGDMY-------------------NDMGGRSGYGSMRDRQY 498
IE+ + QLP G G + +D GRSG + R Q
Sbjct: 395 IEKLIKM---QLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRG-QR 450
Query: 499 ADTGFDRS----SRMGDSGFGRSGGYRS--------PGSGRYGGNNSSYSGQGGGSSSG- 545
G +RS SR S GR R+ P GR G + QG G +G
Sbjct: 451 PRHGDERSGEGRSRAPRSEEGRPQAARAHQPRGEGRPAGGRPEGRPDAGGAQGAGHRAGQ 510
Query: 546 -----GFGSNANR----SGKFGGPGFSRS 565
G G R +G GG GF +S
Sbjct: 511 PARAEGRGQRTERGQRPAGDIGGLGFMQS 539
>gi|421616413|ref|ZP_16057426.1| DEAD/DEAH box helicase [Pseudomonas stutzeri KOS6]
gi|409781638|gb|EKN61217.1| DEAD/DEAH box helicase [Pseudomonas stutzeri KOS6]
Length = 556
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/363 (41%), Positives = 227/363 (62%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGLGVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + Q +A I + +K + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVAR-IEQAHLMVHADQKIQAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
Length = 589
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 239/390 (61%), Gaps = 16/390 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
DD++ E + + L +S ++ ALA G K IQ A + P + GRD++G A+TGTGKT
Sbjct: 7 DDTTTPE-VTFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKT 65
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYG 207
AF +PIL ++ P LVLAPTRELA QV + F A + + VYG
Sbjct: 66 AAFALPILSRLDLTQT------TPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYG 119
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q+ AL GV VVGTPGR++D +++ L+LSE++F+VLDEAD+ML++GFAEDVE
Sbjct: 120 GQGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVE 179
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P ++ +FSATMP IR ++ KYL +P + + G + A I+ + S
Sbjct: 180 TILADTPDDKNVALFSATMPAQIRRISKKYLDDPAEITVKGKT--ATASNITQRYLTVSY 237
Query: 328 YEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
+K + +++ E+ +G IVF +TK + + LA + A+ + ++GD++Q+QRERT
Sbjct: 238 PQKVDALTRILEVENFEG--MIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERT 295
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
++ + G+ +IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AI
Sbjct: 296 VNQLKSGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAIS 355
Query: 446 IYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
T ++ +K IE+ TQ+ VE
Sbjct: 356 FVTPRERYLLKHIEKATRQPLTQMQLPTVE 385
>gi|407275347|ref|ZP_11103817.1| cold-shock DEAD-box protein, partial [Rhodococcus sp. P14]
Length = 587
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LDI ++ AL+ G PIQ A + P ++GRD++G A+TGTGKT AF +PIL +I
Sbjct: 14 ADLDIDARVLQALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRI 73
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ P L+LAPTRELA QV + F + + P L + +YGG Q+ L
Sbjct: 74 ------DTAVKRPQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGL 127
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +VGTPGRVID + + L++SE++F+VLDEAD+ML++GF EDVE IL P+++Q
Sbjct: 128 RRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESKQ 187
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSATMP IR L+ +YL +P V++ S + IS + S K + +++
Sbjct: 188 VALFSATMPGAIRRLSKQYLHDP--VEITVKSKTTTSANISQRWVLVSHQRKLDALTRIL 245
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I+F +TK+ + LA + A+ ++ ++GDI Q+QRERT+ + G +IL
Sbjct: 246 -EVEQFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDIL 304
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G A+L ++ +K+
Sbjct: 305 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGDALLFVAPRERHLLKA 364
Query: 458 IERDVGCRFTQLPRIAVE 475
IER T++ +VE
Sbjct: 365 IERATRQPLTEIQLPSVE 382
>gi|323509827|dbj|BAJ77806.1| cgd6_4860 [Cryptosporidium parvum]
Length = 390
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 234/372 (62%), Gaps = 29/372 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 16 IDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 75
Query: 161 IIK---FN-EKHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQ 214
++K F+ KHGR PL LVL PTRELA+QV EF + VYGG+P Q
Sbjct: 76 LLKKGKFDPNKHGR--RPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQ 133
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 134 IQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVR 193
Query: 275 -----------QNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLV-----GDSDQKLA- 315
QN+ Q ++FSAT+PPW++++ + + + +TVD+ G+ + + A
Sbjct: 194 KETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAA 253
Query: 316 -DGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ L
Sbjct: 254 RSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVL 313
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433
HGDI Q+QRE L AF++GR+ L+ATDVAARGL + +V ++I P +T++HR+GR
Sbjct: 314 HGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGR 373
Query: 434 TGRAGKKGSAIL 445
TGRAGK G+AI+
Sbjct: 374 TGRAGKFGTAIM 385
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R+ L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 481
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 230/374 (61%), Gaps = 17/374 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S++I ALA +Q V+ A++ +D++ +A+TG+GKT AFGIP+ D +I++
Sbjct: 11 VSEEIQRALAVLKYETPTEVQNKVIPSALENQDLVVKAQTGSGKTAAFGIPVSD-MIEWE 69
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVD 223
EK P L+L PTRELA QV ++ + + VYG P S Q L
Sbjct: 70 EK-----KPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQKTH 124
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRV+D I+R L+L++++++++DEAD+ML+ GF ++VE I++ LP NR +M+FS
Sbjct: 125 VVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVFS 184
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT+P + +L +KY+ NPL +++ +S AD I I EK S++ IT
Sbjct: 185 ATLPKDVENLCHKYMNNPLQIEI--ESTGVTADTIEHSLIEVREEEKISLLKD-ITVVEN 241
Query: 344 GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
C++F +TK + D + + K+ Y CE LHG + Q R + F+ G F L+ATDV
Sbjct: 242 PDSCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDV 301
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462
AARG+D+ NV L+I+Y++P E++VHRTGRTGRAG KG AI + T + + +K+IER +
Sbjct: 302 AARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITLSTPYEGKFIKAIERYI 361
Query: 463 GCRFTQLPRIAVEG 476
G +LP AVE
Sbjct: 362 GF---ELP--AVEA 370
>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 541
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 242/396 (61%), Gaps = 24/396 (6%)
Query: 77 WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136
W+ + A + V S + GL+ + ++ A+ G + PIQ A + ++G
Sbjct: 2 WEETRQAEERKVESMSSFESFGLN-------RRVLQAIHDMGFEEPSPIQAACIPVVLEG 54
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
RD+IG+A+TGTGKT AFGIP+++++ +VL PTRELA QV E +
Sbjct: 55 RDVIGQAQTGTGKTAAFGIPLVERVSTEPRVQA-------IVLTPTRELAIQVAGEIRKI 107
Query: 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
A + ++ +YGG I HQ+RAL GV V+GTPGRV+D I R L+LS+V+ VVLDEA
Sbjct: 108 AKYKRVRSVPIYGGQSIVHQIRALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEA 167
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQ 312
D+ML +GF +D+E IL P +RQ+M+FSAT P ++ L +Y+++P +TV+ G+
Sbjct: 168 DEMLDMGFIDDIEAILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITVNR-GEVTV 226
Query: 313 KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCE 371
D + + + + S+ + +E + G I+F +TKR D L A +A+ Y +
Sbjct: 227 PQIDQVCYKVLERNKLD--SLCRIVDSEDIQLG--IIFCRTKRGVDDLVEALLARGYLAD 282
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431
LHGD+SQ+QR+R + FR +L+ATDVAARGLDV +V +I+Y++P E++VHR
Sbjct: 283 GLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRI 342
Query: 432 GRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467
GRTGRAGK+G AI + T ++ + +K IER++ + T
Sbjct: 343 GRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKIT 378
>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
17982]
gi|153798516|gb|EDN80936.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 722
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 242/394 (61%), Gaps = 23/394 (5%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
DD + +E D + L + ++I+AA+ G PIQ A + P ++ RD++G A+TGT
Sbjct: 34 DDHADEEDTDTVTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGT 93
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA---KQVEKEFHESAPSLDTIC 204
GKT AFG+P+L I+ +E RN LVLAPTRELA Q ++F LD +
Sbjct: 94 GKTAAFGLPLL-AIVDADE-----RNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVP 147
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +GFAE
Sbjct: 148 VYGGSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAE 207
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSI 323
DVE I P +R + +FSATMP I + ++LK+P+ V + +S D I Y++
Sbjct: 208 DVETIASSAPDDRLTALFSATMPAAIEKVAREHLKDPVKVAVSTES--STVDTIHQTYAV 265
Query: 324 ATSMYEKPSIIGQLIT--EHAKGGK-----CIVFTQTKRDADRLAHAM-AKSYNCEPLHG 375
++ ++ L T +H K G+ IVF +T+ D + ++ + ++ + + G
Sbjct: 266 VPYKHKIGALSRVLATRAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISG 325
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
D++Q++RER + ++G ++L+ATDVAARGLDV + L++++++P E +VHR GRTG
Sbjct: 326 DVAQTERERMVERLKNGSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTG 385
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
RAG++G A+ +T ++ +++ IE+ G ++
Sbjct: 386 RAGREGRALTFFTPREHGRLRRIEKLTGTEMEEV 419
>gi|375092115|ref|ZP_09738400.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
gi|374561881|gb|EHR33218.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
Length = 540
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 229/380 (60%), Gaps = 16/380 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S +++ A+A G K PIQ+ + ++GRD+I RA+TGTGKT AFGIP++
Sbjct: 1 MKFNELNLSNELIKAVADMGYEKPSPIQEKAIPTLLEGRDVIARAQTGTGKTAAFGIPLV 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
+ I +E H +G L+L PTRELAKQV E + A P + +I +YGG+ + Q+
Sbjct: 61 EMI--EDENHIQG-----LILVPTRELAKQVSDEIKKIAKYKPHVKSIAIYGGSDMRRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
++L G + VVGTPGRV+D + R L LS+++F+VLDEAD+M +GF +D++ I+++
Sbjct: 114 KSLKLGTNIVVGTPGRVMDHLNRRTLKLSKLKFLVLDEADEMFDMGFRDDMKTIIDQTNP 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
NRQ+ FSATM I + Y P + + + + + I Y + K I+
Sbjct: 174 NRQTCFFSATMGNDIMEFSKLYQNIPQQI--LIEQKELTVEKIKQYYLEMDSKMKKEILN 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + IVF TKR D+L + K YN + LHGD+ QSQR+ + FR
Sbjct: 232 RLLGMY-NPNLSIVFCNTKRMVDQLVTDLTKLGYNVDALHGDMKQSQRDNVMKRFRASTI 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
ILIATD+AARGLDV NVDL+++Y+LP ++ +VHR GRT RAGKKG + T + +
Sbjct: 291 EILIATDIAARGLDVENVDLVVNYDLPQQNDYYVHRIGRTARAGKKGISFTFVTSRDRNK 350
Query: 455 VKSIERDVGCRF--TQLPRI 472
+ IER + +LP I
Sbjct: 351 LGEIERYTNSKMEKMELPTI 370
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/355 (43%), Positives = 223/355 (62%), Gaps = 15/355 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S I DIV+ALA GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L+K+
Sbjct: 36 SDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLNKV 95
Query: 162 I-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES--APSLDTICVYGGTPISHQ 214
I K++ +G+ P L +APTRELA QV + + A + + VYGG Q
Sbjct: 96 IARGDDKWDGFVHKGK-PQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEPQ 154
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ VVGTPGR+IDL K+ L+LS + VVLDEAD+ML +GF DVE +L
Sbjct: 155 IDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMTS 214
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV----GDSDQKLADGISLYSIATSMYEK 330
RQ+M+FSATMP + +L +Y+ P + + GD+ Q + I+ + +K
Sbjct: 215 PGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTV-KAITQHVYRAHAMDK 273
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAF 389
++ +++ + + G IVF++TKR A ++A +A + + +HGD+ Q RE+ L AF
Sbjct: 274 VEMLARMLQANGR-GLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGAREQALRAF 332
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
R G+ ++L+ATDVAARG+DV NV +I+Y+ P +T+VHR GRTGRAG+ G A+
Sbjct: 333 RSGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIAV 387
>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 722
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 242/394 (61%), Gaps = 23/394 (5%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
DD + +E D + L + ++I+AA+ G PIQ A + P ++ RD++G A+TGT
Sbjct: 34 DDHADEEDTDTVTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGT 93
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA---KQVEKEFHESAPSLDTIC 204
GKT AFG+P+L I+ +E RN LVLAPTRELA Q ++F LD +
Sbjct: 94 GKTAAFGLPLL-AIVDADE-----RNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVP 147
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +GFAE
Sbjct: 148 VYGGSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAE 207
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSI 323
DVE I P +R + +FSATMP I + ++LK+P+ V + +S D I Y++
Sbjct: 208 DVETIASSAPDDRLTALFSATMPAAIEKVAREHLKDPVKVAVSTES--STVDTIHQTYAV 265
Query: 324 ATSMYEKPSIIGQLIT--EHAKGGK-----CIVFTQTKRDADRLAHAM-AKSYNCEPLHG 375
++ ++ L T +H K G+ IVF +T+ D + ++ + ++ + + G
Sbjct: 266 VPYKHKIGALSRVLATRAQHIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISG 325
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435
D++Q++RER + ++G ++L+ATDVAARGLDV + L++++++P E +VHR GRTG
Sbjct: 326 DVAQTERERMVERLKNGSLDVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTG 385
Query: 436 RAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
RAG++G A+ +T ++ +++ IE+ G ++
Sbjct: 386 RAGREGRALTFFTPREHGRLRRIEKLTGTEMEEV 419
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 229/371 (61%), Gaps = 12/371 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS+ + ++ R G + PIQ+ + M+G+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ K G N L++APTRELA QV +E + ++ + VYGG IS Q+RAL
Sbjct: 65 ---DTKDG---NVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR++D I R L L V ++LDEAD+ML++GF ED++ I+ +P RQ+
Sbjct: 119 NRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + K++K P V + S + + I + + + EK + +L+
Sbjct: 179 LLFSATMPDAIRRIAEKFMKTPEIVKI--KSKEMTVENIEQFYVKSVEREKFDFLSRLLN 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA A+ + Y E +HGD+SQ++R L F+ G+ +IL+
Sbjct: 237 VQ-QPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+ T ++ + +
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIV 355
Query: 459 ERDVGCRFTQL 469
ER + L
Sbjct: 356 ERTTKKKMEAL 366
>gi|367470617|ref|ZP_09470306.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
gi|365814311|gb|EHN09520.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
Length = 503
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 221/369 (59%), Gaps = 12/369 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S+ ++ AL G + PIQ+ + P ++GRD+IG+A+TG+GKT AFG PI++ +
Sbjct: 5 ADLRLSEPVLEALRDIGYERPSPIQEQAIPPMLEGRDVIGQAQTGSGKTAAFGAPIVNYV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ + LVL PTREL QV + ++ + +GG PI Q+ L
Sbjct: 65 DPSDP------DTQALVLTPTRELCIQVTQAIRGFGLRKGVEVVATFGGAPIRDQISRLR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G VVGT GRV+DLI R AL L +FVVLDEAD+ML +GF EDVE IL R P RQ+
Sbjct: 119 SGAHVVVGTVGRVLDLIDRGALQLGSCRFVVLDEADEMLDLGFLEDVEKILRRTPNGRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSATM P IR L + YL +P+ V + +D D + + + + +KP + ++I
Sbjct: 179 SLFSATMAPPIRKLADNYLYDPVHVKV--KADTLTVDTVEQFRVEVNAKDKPQKLAEVI- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E + + IVF +TK DRL + + N LHGD+SQ QR+ + AF+ GR +L+
Sbjct: 236 EAERPSQAIVFCRTKIGTDRLFRLLKDRGNNVRALHGDLSQGQRDGVMLAFKGGRVPLLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V +I+Y++P + +T+VHR GRTGRAG G AI +Q R+ ++I
Sbjct: 296 ATDVAARGLDISTVTHVINYDVPRSPDTYVHRIGRTGRAGASGRAITFVEPKQQREREAI 355
Query: 459 ERDVGCRFT 467
E +G T
Sbjct: 356 EAHIGMEIT 364
>gi|429757621|ref|ZP_19290153.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429174759|gb|EKY16228.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 564
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/348 (41%), Positives = 216/348 (62%), Gaps = 11/348 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S IV AL RGI+ FPIQ L A+ D+IG+A+TGTGKTL FGIP+L+ +I +
Sbjct: 69 VSDPIVDALEERGITHPFPIQALTLPVALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPD 128
Query: 166 EKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E+ P L++ PTREL KQV + +A L T + +YGG Q+ AL
Sbjct: 129 EEGYEDLLNPNMPQALIILPTRELTKQVADDLRAAASKLSTRIVDIYGGVAFEPQIEALK 188
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR+IDL+++ L+L+ V+ VVLDEAD+ML +GF DVE +L R+P +R
Sbjct: 189 RGADIVVGTPGRLIDLLRQGVLHLNGVENVVLDEADEMLDLGFLPDVETLLSRIPADRHM 248
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLI 338
M+FSATMP + +L K++ P + DQ + + + T K ++ +++
Sbjct: 249 MLFSATMPGPVITLARKFMTQPTHIRAQDPDDQGQTVNTVQQVIYRTHAMNKTEVVARIL 308
Query: 339 TEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
A+G G+ ++F +TKR A R+A + + + LHGD+ Q RE+ L AFR+G+ ++
Sbjct: 309 --QARGRGRAVIFCRTKRAAARVADELTERGFAVAALHGDLGQGAREQALRAFRNGKVDV 366
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
L+ATDVAARG+DV +V +I+Y+ P + ++HR GRTGRAG G+A+
Sbjct: 367 LVATDVAARGIDVDDVTHVINYQCPEDEKVYIHRIGRTGRAGNSGTAV 414
>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 462
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 224/380 (58%), Gaps = 13/380 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
D+ ++ + G + PIQK + ++GRD++G+A TGTGKT AFG+PILD+I
Sbjct: 6 FDLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPILDRI-- 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYG 221
RG LV+ PTRELA QV E + + T+ VYGG Q+ + G
Sbjct: 64 -----ARGEIERALVITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIHRG 118
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VV TPGR+ DL ++ +++ + VVLDEAD+ML +GF +DV I E +PQNRQ+++
Sbjct: 119 VQIVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQTLL 178
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I+ L + L P + +VG+ K D Y + +I+ L TE+
Sbjct: 179 FSATMPDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVRLLETEN 238
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
K ++F + KR+ DRLA + A +N LHGDI Q +R+ + +FR G ILIAT
Sbjct: 239 YD--KALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILIAT 296
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+ NV + +Y +P +++VHR GRTGRAGK+G AI + + ++ R+++ I +
Sbjct: 297 DVAARGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRIRK 356
Query: 461 DVGCRFTQLPRIAVEGGGDM 480
+VG +L + V G G +
Sbjct: 357 EVGADM-KLATLQVAGSGSI 375
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/380 (39%), Positives = 231/380 (60%), Gaps = 15/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F+ G+ CL+L PTRELA QV E + + VYGG I Q++
Sbjct: 61 NN---FSSNDGK---VFCLILTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+ML +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMLDMGFIDDIKEIINHTNRE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+MMFSATMP I++L KY+K N + +V + + + E+ +
Sbjct: 175 RQTMMFSATMPDEIKNLAKKYMKSNAKFISIVKKT--MTVSTVQHFYYEVKNQERFESLC 232
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ I + + I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G
Sbjct: 233 R-ILDVDEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGIL 291
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+ L+ATDVAARG+D+ NV +I+Y LP E++VHR GRTGRA + G A + T ++
Sbjct: 292 DFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPA 351
Query: 455 VKSIERDVGCRF--TQLPRI 472
+K IE+ C+ +LP +
Sbjct: 352 LKRIEKATRCKIKRKELPTV 371
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R+ L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEVTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|409392122|ref|ZP_11243740.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
gi|403197987|dbj|GAB86974.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
Length = 595
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 224/370 (60%), Gaps = 13/370 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
LDI + AA+ G PIQ A + P M GRD++G A+TGTGKT AF IPIL ++
Sbjct: 28 LDIEPRVRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRL-- 85
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDY 220
R P L+LAPTRELA QV + F P + + +YGG Q+ L
Sbjct: 86 ----DTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRR 141
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G +VGTPGRVID + + L++S ++F+VLDEAD+ML++GFAEDVE IL P +Q
Sbjct: 142 GAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA 201
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L +YLK+P + + S A I+ + S K + + + E
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFL-E 258
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TK+ + LA + ++ + ++GD++Q+QRERT++ + G +IL+A
Sbjct: 259 VEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKSGSIDILVA 318
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++ +++IE
Sbjct: 319 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAIE 378
Query: 460 RDVGCRFTQL 469
R T++
Sbjct: 379 RATRQELTEI 388
>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|420263005|ref|ZP_14765645.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|394769969|gb|EJF49787.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
Length = 508
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 229/369 (62%), Gaps = 12/369 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++S +++ ++ R G + PIQ+A + A+ G+D+IG+A+TGTGKT AFG+P+L+KI
Sbjct: 6 LELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPMLEKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
N + LV+APTRELA Q ++E + + VYGG I Q+R L
Sbjct: 66 ANHQLQ------GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDR 119
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P RQ+++
Sbjct: 120 PHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLL 179
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMPP I+++ K++K P V + + + AD I Y + + YEK ++ +L+
Sbjct: 180 FSATMPPAIKNIGVKFMKEPEHVQI--KAKEMTADLIDQYYVRSKDYEKFDVMTRLLDVQ 237
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G+ +IL+AT
Sbjct: 238 SP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVAT 296
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + + IE
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVIEN 356
Query: 461 DVGCRFTQL 469
R T +
Sbjct: 357 LTKKRMTPM 365
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 173/510 (33%), Positives = 285/510 (55%), Gaps = 20/510 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+ +AA+ R G + P+Q+ + ++GRD+I A TGTGKT AF +P+L + +
Sbjct: 7 LGLSEAALAAVERLGYDQPTPVQEQAIPHVLEGRDLIAAASTGTGKTAAFLLPVLSMLPR 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
GR R P LV++PTRELA+Q+ + + + T V+GGTP Q++ L G
Sbjct: 67 ---ARGRNRAPRVLVVSPTRELAQQIARTCMQISRKTGHFTTTVFGGTPYGPQIKELRGG 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D ++ TPGR+ DL+KR ++LS VQ +VLDEAD+ML +GF DV I++ P+ RQ+++
Sbjct: 124 TDVLIATPGRLKDLMKRGVVDLSSVQTLVLDEADRMLDMGFLPDVTTIVDATPECRQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSAT+ I+ L NP V++ + + A+ ++ Y + + +KP ++ ++ E
Sbjct: 184 FSATIDHSIQKNLGSLLTNPAIVEIARNGET--AETVAQYVMPIANRKKPELLHAVLDE- 240
Query: 342 AKGG-KCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
KG + IVF +TK + A + +S Y+ E +H D SQ QR+R L FR G+ +IL+A
Sbjct: 241 -KGAERVIVFARTKNRTEECADELRRSGYSVESIHSDKSQGQRKRALDNFRRGKTSILVA 299
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDV ARG+DVP+V+ +I+++LP+ E +VHR GRTGRAG++G AI T + R +K IE
Sbjct: 300 TDVLARGIDVPDVNHVINFDLPDMPEDYVHRIGRTGRAGEEGFAISFVTSETHRTLKDIE 359
Query: 460 RDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGDSGFGRSGG 519
R +G +P + +E +D+ + + R+ + A G+ + ++ G F
Sbjct: 360 RLIG---KDIPFMGLENYALNESDLKKPAKSKNPRNGRPAKGGY-KGAKSGRPAFAERSN 415
Query: 520 YRSPGSGRYGGNNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRSGGWGESTKSDRSSA 579
+ G GR S + SS+ + R+G+ R+ + T+ R +
Sbjct: 416 NKGSG-GRDNRPGRSTRSESKRSSTAEATTGHGRNGENAKRRVERTEKFAAKTQGKRPA- 473
Query: 580 FGDTGSRQSGRFGDLGDNHSSRSSGGFTDF 609
G+T +R++G D + S + ++ F
Sbjct: 474 -GNTNARKAG--ADTSEKRSVKGGYNYSRF 500
>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 605
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 229/372 (61%), Gaps = 22/372 (5%)
Query: 89 AYDDSSKDEGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTG 146
A+ +S + D+S D + Q+IV AL GI+ FPIQ L A+Q D+IG+A+TG
Sbjct: 56 AHHAASAIQRQDVSFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTG 115
Query: 147 TGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---P 198
TGKTL FGIP+L++++ ++E G+ P +V+APTRELA QV + ++ P
Sbjct: 116 TGKTLGFGIPLLNRVVAPGEPGWDELVAPGK-PQAVVVAPTRELAVQVAGDLATASAHRP 174
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
SL I +YGG Q+ L G + VVGTPGR++DL+ + LNL + +VLDEAD+ML
Sbjct: 175 SLRVIQIYGGRAYEPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEML 234
Query: 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+GF DVE IL RLP R +M+FSATMP + S+ +Y+ P + D+ G+
Sbjct: 235 DLGFLPDVEKILSRLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDE----GV 290
Query: 319 SLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEP 372
++ +I +Y +K ++ +L+ + G+ IVF +TKR A +++ + + +
Sbjct: 291 TVKNIKQVVYRAHALDKIEVLARLLQAEGR-GRSIVFARTKRTAAKVSDELRDRGFAAGA 349
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTG 432
+HGD+ Q RE+ L A R G+ ++L+ATDVAARG+DV +V +++Y+ P T++HR G
Sbjct: 350 IHGDLGQGAREQALRALRHGKIDVLVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVG 409
Query: 433 RTGRAGKKGSAI 444
RTGRAG KG+A+
Sbjct: 410 RTGRAGNKGTAV 421
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 223/364 (61%), Gaps = 12/364 (3%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ A+ G + PIQ+ + AMQG D+IG+A+TGTGKT AF IP++ KI K
Sbjct: 13 VLKAITEMGFEEATPIQEKTIPLAMQGLDLIGQAQTGTGKTAAFSIPLIHKIETSQSKI- 71
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVG 227
+ LV+ PTRELA QV +E + + ++ +YGG I Q+RAL ++G
Sbjct: 72 -----VALVMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRALKKRPQIIIG 126
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR++D I R + L +V+ VVLDEAD+ML +GF ED++ IL ++P+ R +M+FSATMP
Sbjct: 127 TPGRLLDHINRKTIRLEDVETVVLDEADEMLDMGFMEDIQAILSQVPEERHTMLFSATMP 186
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
P I+ L ++L++P V ++ Q A I I +K + +LI A
Sbjct: 187 PNIQKLAQQFLRDPQHVSVI--PKQVSAPLIQQAYIEVHEKQKFEALCRLIDMEAPD-LA 243
Query: 348 IVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
I+F +TKR D L+ A+ K Y+ E LHGD+SQ+QR+ + FRDG ++L+ATDVAARG
Sbjct: 244 IIFGRTKRRVDELSEALQKRGYSAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARG 303
Query: 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
LDV V +++++LP E++VHR GRTGRAGK+G+A T ++ + IER R
Sbjct: 304 LDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIERVTRHRI 363
Query: 467 TQLP 470
T+ P
Sbjct: 364 TRKP 367
>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 861
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 227/379 (59%), Gaps = 13/379 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
KDEG+ + L + +D++ A+ G IQK + + GRD++G A+TGTGKT AFG
Sbjct: 157 KDEGITFTDLGLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFG 216
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPI 211
+P+LD + R LVLAPTRELA Q + + A LD + VYGG P
Sbjct: 217 LPLLDAV------DSRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPY 270
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL G VVGTPGRVIDLI + AL L +V++ VLDEAD+ML +GFAEDVE I +
Sbjct: 271 GPQIGALKGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQ 330
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
LP +R++ +FSATMPP I+++ ++L P+ V+ V +A Y++ ++
Sbjct: 331 SLPTDRRTALFSATMPPAIQAVARQHLHEPVQVE-VSRPASTVATVHQTYAVVPFRHKIG 389
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ L A+ IVF +TK A+ +A +A + + GD+ Q +RER + R
Sbjct: 390 AVSRVLAVTDAEA--AIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLR 447
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G ++L+ATDVAARGLDV + L++++++P +E +VHR GRTGRAG+ G A+ T +
Sbjct: 448 AGTLDVLVATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPK 507
Query: 451 QARQVKSIERDVGCRFTQL 469
+ +++ IER G R ++
Sbjct: 508 EKGKLRQIERLTGSRLEEI 526
>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
Length = 594
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 229/380 (60%), Gaps = 17/380 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + I AL G + P+Q+A + P ++G+D++ A TGTGKT AF +P+L +I +
Sbjct: 19 LGVHPKIAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLLTRIAE 78
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYG 221
+ G G P L+L PTRELA QV + H L + VYGG + Q+RAL G
Sbjct: 79 KGRRAGNG--PGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRRG 136
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD V+ TPGR +D IKR L + VVLDEAD+ML +GFAE++E IL+ P+N+Q+ +
Sbjct: 137 VDVVIATPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTAL 196
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-----LYSIATSMYEKPSIIGQ 336
FSAT+PP I + K+L+ P+ V + + +A+G S + + + ++ P++
Sbjct: 197 FSATLPPRIGGIAQKHLRQPVHVKV---EREVVAEGESARVRQVAYVVSRAHKMPALARV 253
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E IVF +T+ + D L+ + A+ E LHG +SQ QR+R + FR + +
Sbjct: 254 LDIEQPT--SAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVD 311
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+LIATDVAARGLDV +V ++++++P +ET+VHR GRTGRAG++G A+ ++ R +
Sbjct: 312 LLIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLL 371
Query: 456 KSIERDVG--CRFTQLPRIA 473
++IER G Q+P +A
Sbjct: 372 RNIERQTGQKIEIAQVPTVA 391
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 229/375 (61%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R+ L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKSPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|386021214|ref|YP_005939238.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 4166]
gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 556
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 227/363 (62%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPDVSVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P + + + Q +A I + +K + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVAR-IEQAHLMVHADQKIQAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 225/372 (60%), Gaps = 15/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +++ ++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+ I
Sbjct: 10 ELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSI- 68
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
+P LVLAPTRELA QV + F A L + +YGG + Q+ AL
Sbjct: 69 -----DPNTNSPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +D+E ILE P+ RQ
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQL 183
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NKYL P+ V + + + I + S + K +++ L
Sbjct: 184 ALFSATMPEQIKRVANKYLSEPVHVKIAATT--TTVETIEQRFVQVSQHNKLEALVRVLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +I+
Sbjct: 242 VEKTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDII 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 360 IERATKSRISPM 371
>gi|290580897|ref|YP_003485289.1| ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449971807|ref|ZP_21814550.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|450060032|ref|ZP_21843592.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|450067851|ref|ZP_21846836.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|450093968|ref|ZP_21856845.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|450150739|ref|ZP_21876730.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|450166956|ref|ZP_21882509.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449171557|gb|EMB74214.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|449202498|gb|EMC03410.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|449207793|gb|EMC08456.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|449216747|gb|EMC16840.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|449233184|gb|EMC32266.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|449239040|gb|EMC37773.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
Length = 517
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 230/366 (62%), Gaps = 14/366 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V +V + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIV--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGY 350
Query: 455 VKSIER 460
++ IE+
Sbjct: 351 LQIIEK 356
>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 559
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 238/404 (58%), Gaps = 10/404 (2%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
+++ A + K + + L + DIV AL+ GI + F IQ L A++G D+IG+AR
Sbjct: 9 NNHTAGPVAGKPDNPTFADLGVHPDIVRALSESGIERTFDIQALTLPLALRGEDVIGQAR 68
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT-- 202
TGTGKTL FG+P+L +++ G G P LV+ PTREL QV ++ E+ L
Sbjct: 69 TGTGKTLGFGVPLLQRLVT----PGDG-TPQALVVVPTRELCLQVSQDLAEAGKYLGVRI 123
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+YGG P Q+++L GVD V+GTPGR++DL ++ L L ++ +VLDEAD+ML +GF
Sbjct: 124 TSIYGGRPYESQIQSLRSGVDVVIGTPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGF 183
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
D+E IL +P++RQ+M+FSATMP I +L +L+ P + + + + +
Sbjct: 184 LPDIERILRMVPEDRQTMLFSATMPGPILTLARTFLRQPTHIRAEAGETGAIHERTTQFV 243
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQ 381
+KP +I +++ + G ++FT+TKR A ++A + + + +HGD+ Q
Sbjct: 244 YRAHSLDKPELIAKVLQAEGR-GLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGA 302
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RE+ L AFR G+ +IL+ATDVAARG+DV V +I+Y++P +T+VHR GRTGRAG+ G
Sbjct: 303 REQALRAFRSGKVDILVATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTG 362
Query: 442 SAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYNDMG 485
AI + + + K I ++G + P ++ D+G
Sbjct: 363 VAITLVDWDEVPRWKLISDELGLDMPE-PVETYSTSKHLFTDLG 405
>gi|389797680|ref|ZP_10200720.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
gi|388446754|gb|EIM02774.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
Length = 609
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 229/381 (60%), Gaps = 13/381 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D+ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I +
Sbjct: 8 LALHPDVQRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIER 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A P + +YGG Q+ +L
Sbjct: 68 ------RPGKPQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKR 121
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++F+VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 122 GVHVVVGTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQVA 181
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + ++LKNP+ V + + A+ Y + M++ ++ I E
Sbjct: 182 LFSATMPAPIRKIAQRHLKNPVEVT-IKAATTTAANIHQRYWFVSGMHKLDALTR--ILE 238
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK+ + LA + A+ ++GDI+Q+QRER + +DG+ +IL+A
Sbjct: 239 AEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVA 298
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL + ++ + +IE
Sbjct: 299 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLHAIE 358
Query: 460 RDVGCRFTQLPRIAVEGGGDM 480
R Q+ +VE D+
Sbjct: 359 RATRQPIEQMQLPSVEVVNDV 379
>gi|404260234|ref|ZP_10963530.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
gi|403401275|dbj|GAC01940.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
Length = 594
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 226/370 (61%), Gaps = 13/370 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L+I + AA+ G PIQ A + P M GRD++G A+TGTGKT AF IPIL ++
Sbjct: 28 LEIESRVRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRL-- 85
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDY 220
R+P L+LAPTRELA QV + F P + + +YGG Q+ L
Sbjct: 86 ----DTSARSPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRR 141
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G +VGTPGRVID + + L++S ++F+VLDEAD+ML++GFAEDVE IL P +Q
Sbjct: 142 GAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA 201
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L +YLK+P + + S A I+ + S K + + + E
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFL-E 258
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TK+ + LA + ++ + ++GD++Q+QRERT++ ++G +IL+A
Sbjct: 259 VEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILVA 318
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++ +++IE
Sbjct: 319 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAIE 378
Query: 460 RDVGCRFTQL 469
R T++
Sbjct: 379 RATRQELTEI 388
>gi|389681290|ref|ZP_10172635.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis O6]
gi|399010186|ref|ZP_10712563.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|388554826|gb|EIM18074.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis O6]
gi|398107740|gb|EJL97734.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 557
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++LK+P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG 414
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 226/364 (62%), Gaps = 12/364 (3%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ A+ G + PIQ + A+ G+DMIG+A+TGTGKT AFG+P++ KI K E+
Sbjct: 13 VLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIHKIAKEEERI- 71
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVG 227
+ LV+ PTRELA QV +E + + + ++ +YGG I Q+RAL ++G
Sbjct: 72 -----VALVMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKKKPQIIIG 126
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR++D I R + L +VQ VVLDEAD+ML +GF +D++ IL+ +P+NRQ+++FSATMP
Sbjct: 127 TPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMDDIQSILKLVPENRQTLLFSATMP 186
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
P I+ L +++LK+P V ++ A I I +K + +L+ +
Sbjct: 187 PNIQKLASQFLKDPEHVSVI--PKHVSAPLIDQAYIEVPERQKFEALSRLL-DMESPELA 243
Query: 348 IVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF +TKR D LA A+ K Y+ + LHGD+SQ QR+ + FRDG ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAARG 303
Query: 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
LDV V +++++LP E++VHR GRTGRAGK+G+A T ++ + IER R
Sbjct: 304 LDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTRHRI 363
Query: 467 TQLP 470
+ P
Sbjct: 364 PRKP 367
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 225/362 (62%), Gaps = 8/362 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L +S+ ++ L + ++ PIQ + P ++GRD+IG A+TGTGKT AF +PIL ++
Sbjct: 13 SQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHRL 72
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
K + L+L+PTREL+ Q+ K + SL + V GG I Q++ L
Sbjct: 73 APG--KPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLA 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD ++ TPGR++DLI++ A++L+E++ VVLDEADQML +GF ++ IL P RQ+
Sbjct: 131 SGVDVLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATRQT 190
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR L++++L +P+ V ++ +K AD + + K + LI
Sbjct: 191 LLFSATMPKEIRQLSDRHLTDPIEVSVI--PAKKTADRVEHSVMHMQPGAKMGALASLIR 248
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ KG + IVFT+TKR AD+ A + N +HG+ SQ QRER L+ FR G +LI
Sbjct: 249 DR-KGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLI 307
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATD+AARG+DVP V L+++YELPN E +VHR GRT RAG +G+A+ + ++ I
Sbjct: 308 ATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDI 367
Query: 459 ER 460
E+
Sbjct: 368 EK 369
>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 543
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 229/381 (60%), Gaps = 15/381 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L++S +I+ A+ G + PIQ + M G D+IG+++TGTGKT AFGIP+L
Sbjct: 4 LKFNELNLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
+K + + + ++L PTRELA QV +E F + ++ + VYGG PI QM
Sbjct: 64 EK------TNAKNKAVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQM 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL G V+GTPGRVID ++R L L V+LDEAD+ML +GF +D+E+IL+ +P+
Sbjct: 118 IALSKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPE 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++ FSATMP SLT KY +P T+ +V S++ I Y ++K +
Sbjct: 178 GRQTVFFSATMPKEFLSLTKKYQHSPETIKVV--SEKLTVPSIEQYYFDIKEHQKLEALT 235
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ + + +VF TK+ D + ++ A+ Y + +HGD++QSQR R +S FR+G
Sbjct: 236 RCLDMY-DPKLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSI 294
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+LIATDVAARG+DV +D++ ++++P E +VHR GRTGRAGK G A + + +
Sbjct: 295 ELLIATDVAARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYK 354
Query: 455 VKSIER--DVGCRFTQLPRIA 473
++ I+R + Q+P +A
Sbjct: 355 LRDIQRYTKANIKRMQVPSLA 375
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R+ L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
Length = 673
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 222/351 (63%), Gaps = 12/351 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--ILDKIIKFNE 166
+I+ + + G S PIQ A++GRD++ A+TG+GKTL + +P IL K ++ N
Sbjct: 167 EILREVLQAGFSAPTPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLPGFILLKRLQHNS 226
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ G P LVL+PTRELA Q++ E F S+ + + C+YGG P Q+R L+ G D
Sbjct: 227 REG----PTVLVLSPTRELATQIQDEAIKFGRSS-RISSTCLYGGAPKGPQLRELERGAD 281
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR+ D+++ N ++L +V ++VLDEAD+ML +GF + I++++P RQ++M++
Sbjct: 282 VVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQTLMYT 341
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHA 342
AT P +R + + L NP+ V+ +G++DQ +A+ I+ + EK + Q++
Sbjct: 342 ATWPKEVRRIASDLLNNPVQVN-IGNTDQLVANKSITQHVEVIPHMEKSRRLDQILRSQD 400
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G K I+F TKR D+LA +++ Y +HGD SQS+R+ L+ FR GR +L+ATDV
Sbjct: 401 PGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQSERDSVLNDFRSGRCPVLVATDV 460
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
AARGLD+ ++ ++++Y+ P E +VHR GRTGRAG GSA + DQ ++
Sbjct: 461 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSK 511
>gi|440747418|ref|ZP_20926677.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
gi|436484338|gb|ELP40342.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
Length = 607
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 231/389 (59%), Gaps = 24/389 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L S L +S++I+ A+ G + PIQ + ++G+D+IG+A+TGTGKT AF I
Sbjct: 2 EKELLFSDLGVSEEILRAVEDMGYTHPSPIQAQTIPMLLEGKDVIGQAQTGTGKTAAFAI 61
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPIS 212
PI+D++ K P L+L PTRELA QVE E + L + C+YGG +
Sbjct: 62 PIIDQVDVTLYK------PQALILCPTRELAVQVEGEIVKLSKFKKGLSSTCIYGGDSMD 115
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+R L GV VVGTPGR++D + R L L V +VLDEAD+ML +GF ED+E IL
Sbjct: 116 RQIRDLKKGVQVVVGTPGRIMDHMDRGTLKLDHVGIIVLDEADEMLDMGFREDIESILSD 175
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KP 331
P+ RQ++ FSATMP I LT KY +P V + L +++ +I+ YE KP
Sbjct: 176 CPEERQTVFFSATMPKPILDLTKKYQNDPEIVKV-------LKKELTVENISQVYYEVKP 228
Query: 332 SIIGQLITEHAKGGK---CIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLS 387
S+ +L++ + +VF TKR D + MA+ E LHGD+SQ+QR + +
Sbjct: 229 SLKLELMSRLMNLNQFNLSVVFCNTKRITDEVTEELMARGIQAEALHGDLSQAQRSKVMG 288
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR G ++L+ATDVAARG+DV +V+ + +Y+LP E +VHR GRTGRAGK G+AI
Sbjct: 289 KFRKGHVSVLVATDVAARGIDVNDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGTAISFV 348
Query: 448 TDQQARQ-VKSIERDVGCRFTQL--PRIA 473
T ++ Q +K +ER + ++ P +A
Sbjct: 349 TGRRDMQKLKDLERFIKTNINRMDPPSVA 377
>gi|425900700|ref|ZP_18877291.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883897|gb|EJL00384.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 557
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++LK+P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG 414
>gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
Length = 660
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 231/381 (60%), Gaps = 14/381 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S I++AL G K PIQ + + GRD++G A+TG+GKT AFG+P+L I
Sbjct: 10 ADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI 69
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 70 ------DPTLKAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQLRAL 123
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE IL ++P Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K P V + + S + + +K +++ L
Sbjct: 184 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLE 243
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E I+F +TK +A A+ +S YN L+GD++Q+ RE+TL +DGR +IL
Sbjct: 244 SEDFDA--AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 301
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 302 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQN 361
Query: 458 IERDVGCRF--TQLPRIAVEG 476
+ER + QLP + G
Sbjct: 362 VERTMKLTIPEVQLPNAELLG 382
>gi|384135153|ref|YP_005517867.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289238|gb|AEJ43348.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 526
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 232/367 (63%), Gaps = 17/367 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+++ ++ A+ G + PIQ A + ++GRD+IG+A+TGTGKT AFGIP+++++
Sbjct: 9 LNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVERVSTEP 68
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVD 223
+VL PTRELA QV E + A + ++ +YGG I HQ+RAL GV
Sbjct: 69 RVQA-------IVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQ 121
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
V+GTPGRV+D I R L+LS+V+ VVLDEAD+ML +GF +D+E IL P RQ+M+FS
Sbjct: 122 IVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSERQTMLFS 181
Query: 284 ATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
AT P ++ L +Y+++P +TV+ G+ D + + + + S+ + +E
Sbjct: 182 ATFPNEVKRLALRYMRDPQHITVNR-GEVTVPQIDQVCYKVLERNKLD--SLCRIVDSED 238
Query: 342 AKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ G I+F +TKR D L A +A+ Y + LHGD+SQ+QR+R + FR +L+AT
Sbjct: 239 IQLG--IIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVAT 296
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLDV +V +I+Y++P E++VHR GRTGRAGK+G AI + T ++ + +K IER
Sbjct: 297 DVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIER 356
Query: 461 DVGCRFT 467
++ + T
Sbjct: 357 EIKQKIT 363
>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 552
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 225/379 (59%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++ I+ A+ G PIQ + ++G D+IG+A+TGTGKT AFGIP
Sbjct: 2 EAIKFEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G+ ++GTPGRV+D ++R L L V VVLDEAD+ML++GF ED+E IL L
Sbjct: 116 QIRSLKDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSEL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMPP I + K+ K+P V +V + ++ Y K +
Sbjct: 176 PEERQTVMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVPKVTQYYYEVKPKTKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ + IVF TKR D L + + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 234 MCRLLDMY-DPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +ILIATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG++G A + ++
Sbjct: 293 RTDILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREV 352
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 353 YKLREIQR--YCKTKIIPQ 369
>gi|424924182|ref|ZP_18347543.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404305342|gb|EJZ59304.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 557
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 244/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +++ +I+AA+A G + IQ+ + M G+DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS V +VLDEAD+ML +GF +D+EVI + LP RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPSTRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPQHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIG 414
>gi|418063902|ref|ZP_12701506.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373556194|gb|EHP82728.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 417
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 222/359 (61%), Gaps = 9/359 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++Q ++ AL G PIQ + PAM+GRD+ G A+TGTGKT AF +PIL ++ +
Sbjct: 9 LAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLD 67
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDYGV 222
+ R LVL+PTRELA Q+ F + P +T+ V+GG I+ Q RA+ GV
Sbjct: 68 SRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTV-VFGGVNITRQERAIAPGV 126
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D +V TPGR+IDL+ R AL L V+ +VLDEADQML +GF ++ I++ LP RQS+ F
Sbjct: 127 DILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFF 186
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I L ++YL NP+ V + + A+ + I K +++ ++ +
Sbjct: 187 SATMPKNIAGLADQYLSNPVQVAVTPVA--TTAERVDQQVIFCHTGAKQALLNHVLRD-P 243
Query: 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
K + +VFT+TK ADR+ + K S +HG+ SQ QRER L+AFRDG + +L+ATD
Sbjct: 244 KIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSYRVLVATD 303
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
+AARG+DV V +++Y+LPN E++VHR GRT RAG +G AI D++ ++ IER
Sbjct: 304 IAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDIER 362
>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|355627088|ref|ZP_09049059.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|354820528|gb|EHF04943.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
Length = 552
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 225/379 (59%), Gaps = 15/379 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++ I+ A+ G PIQ + ++G D+IG+A+TGTGKT AFGIP
Sbjct: 2 EAIKFEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G+ ++GTPGRV+D ++R L L V VVLDEAD+ML++GF ED+E IL L
Sbjct: 116 QIRSLKDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSEL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMPP I + K+ K+P V +V + ++ Y K +
Sbjct: 176 PEERQTVMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVPKVTQYYYEVKPKTKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ + IVF TKR D L + + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 234 MCRLLDMY-DPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +ILIATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG++G A + ++
Sbjct: 293 RTDILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREV 352
Query: 453 RQVKSIERDVGCRFTQLPR 471
+++ I+R C+ +P+
Sbjct: 353 YKLREIQR--YCKTKIIPQ 369
>gi|399020147|ref|ZP_10722287.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398096157|gb|EJL86486.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 899
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 231/384 (60%), Gaps = 15/384 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L++S+ ++ L G PIQ A + + RD++G+A+TGTGKT AF +PIL +I
Sbjct: 10 SDLNLSEPLLRVLKELGYETPSPIQAATIPTLLNNRDVLGQAQTGTGKTAAFALPILSRI 69
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P LVLAPTRELA QV + F A P + +YGG Q+ AL
Sbjct: 70 ------DIRQTAPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLSAL 123
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRVID + + +L+LS+++ +VLDEAD+ML +GF +DVE IL++ P RQ
Sbjct: 124 RRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPATRQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQL 337
+ +FSATMP I+ + YL++P + + + A+ I Y + + M++ ++ L
Sbjct: 184 TTLFSATMPAVIKRIAKTYLRDPAEITVAAKTG--TAENIRQRYWLVSGMHKLDALTRIL 241
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E G I+F++TK + LA + A+ + ++GD+ Q QRERT+ +DG+ +I
Sbjct: 242 EVEPFDG--LIIFSRTKLGTEELAGKLQARGFAAAAINGDVQQQQRERTIQQLKDGQIDI 299
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARGLDV + +I+Y++P E++ HR GRTGRAG+ G AIL T ++ +K
Sbjct: 300 LIATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGRSGEAILFITPREKNLLK 359
Query: 457 SIERDVGCRFTQLPRIAVEGGGDM 480
SIER TQ+ +V+ D+
Sbjct: 360 SIERSTRQPITQMTLPSVQAVNDV 383
>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
Length = 530
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 227/383 (59%), Gaps = 15/383 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+SS D + + L++ ++ A+ G PIQ + + GRD++G A TGTGKT
Sbjct: 4 ESSAD--VTFADLELHPSVLEAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTA 61
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF +P+L +I + R P LVLAPTRELA QV + F A P + +C+YGG
Sbjct: 62 AFALPVLSRI------DPKLRRPQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGG 115
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q++AL G VVGTPGRV+D ++R L L E++F+VLDEAD+ML +GF EDVE
Sbjct: 116 GAYPVQLQALGRGAQVVVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVER 175
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
+L + +Q +FSATMP IR ++ YL NP+ V + + ++ I + +
Sbjct: 176 VLGAAAEEKQVALFSATMPGAIRKISKTYLHNPVEVTV--KAATTTSENIEQRYTLVAHH 233
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K ++ +++ E IVF +TK+ + LA + A+ + PL+GDI Q+ RERT+S
Sbjct: 234 RKLDLLTRIL-EVEPFSAMIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVS 292
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
A R+G+ +IL+ATDVAARGLDV + + +Y+ P+ +E++VHR GRTGRAG+ G + L
Sbjct: 293 ALREGKIDILVATDVAARGLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFV 352
Query: 448 TDQQARQVKSIERDVGCRFTQLP 470
T ++ + +IER + P
Sbjct: 353 TPRERSMIGAIERATRQPLAETP 375
>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase [Roseobacter denitrificans OCh 114]
gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
114]
Length = 505
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 256/497 (51%), Gaps = 30/497 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L+++ ++ A+ G PIQ + PA+ GRD++G A+TGTGKT +F +P+
Sbjct: 22 IKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPM- 80
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMR 216
I R R P LVL PTRELA QV + F + L + GG Q +
Sbjct: 81 --ITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDK 138
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+D GVD ++ TPGR++D +R L L+ VQ +V+DEAD+ML +GF D+E I P
Sbjct: 139 LIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFT 198
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYSIATSM---YEKP 331
RQ++ FSATM P I +TN +L P +++ + + + G+ ++ + EK
Sbjct: 199 RQTLFFSATMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKR 258
Query: 332 SIIGQLITEHAKGGKC---IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLS 387
++ LI A+G KC IVF K D D +A ++ K +Y+ P+HGD+ QSQR RTL
Sbjct: 259 KVLRALI--DAEGEKCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLD 316
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FRDG LIA+DVAARGLDVP V + ++++P +E +VHR GRTGRAG+ G AI+I
Sbjct: 317 GFRDGSLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMIC 376
Query: 448 TDQQARQVKSIERDVGCRFTQL--PRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDR 505
+ R ++ IER V +L P E + D + R R A D+
Sbjct: 377 VPRDERNLEDIERLVQREIPRLDNPLGTKEAPKEKAPDGEAAASEKPKRTRTRAPRKSDK 436
Query: 506 SSRMGDSGFGRSGGYRSPGSGRYGGNNSSYSGQGGGSSSGGFGSNANRSGKFGGPGFSRS 565
+ ++P + Q S GG NAN +GK GPG
Sbjct: 437 PQ--------ETEAEKTPEEPTVDATPAQEPAQKPARSRGGRNRNAN-TGKDRGPGVI-- 485
Query: 566 GGWGESTKSDRSSAFGD 582
G G+ T +F D
Sbjct: 486 -GLGDHTPEFIGLSFKD 501
>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
Length = 715
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 230/384 (59%), Gaps = 14/384 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+DS + G L + + +V A+ G PIQ + + G D++G A+TGTGKT
Sbjct: 71 NDSEETPGTSFDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKT 130
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD----TICVY 206
AF +PIL I R+P L+LAPTRELA QV F LD + +Y
Sbjct: 131 AAFALPILSLI------DAEIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIY 184
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG Q+ L G VVGTPGRVID +++ +L++SE++F+VLDEAD+ML++GF EDV
Sbjct: 185 GGQAYGIQLSGLRRGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDV 244
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
E IL P+ +Q +FSATMP IR L+ +Y+ +P + + S+ + I+ + +
Sbjct: 245 ERILADTPEEKQVALFSATMPSGIRRLSKQYMNDPHEIQV--KSETRTNTNITQRFLNVA 302
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
K + +++ E + I+F +TK + + LA + A+ +N ++GDI+Q QRERT
Sbjct: 303 HRNKLDALTRIL-EVTEFEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERT 361
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
+ +DGR +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G AIL
Sbjct: 362 VEQLKDGRLDILVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAIL 421
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
T ++ R +++IER ++
Sbjct: 422 FVTPRERRFLRNIERATNAPLQEM 445
>gi|445494630|ref|ZP_21461674.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
gi|444790791|gb|ELX12338.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
Length = 743
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 229/365 (62%), Gaps = 17/365 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++S ++ L G PIQ A + + +D++G+A+TGTGKT AF +PIL ++
Sbjct: 13 TDLNLSAPLIKVLKEVGYESPSPIQAATIPSLLDNQDVLGQAQTGTGKTAAFALPILSRL 72
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ P LVLAPTRELA QV + F A P + +YGG Q+ AL
Sbjct: 73 ------DIKQTTPQALVLAPTRELAIQVAEAFQTYATHIPGFHVLPIYGGQSYGPQLSAL 126
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRVID + + +L+LS+++ +VLDEAD+ML +GF +DVE IL+ P++RQ
Sbjct: 127 RRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETPESRQ 186
Query: 279 SMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+ +FSATMP IR + N YL+NP +TV +++ + Y + + M++ ++
Sbjct: 187 TALFSATMPSAIRRIANTYLRNPKEITVAAKTGTNENIR---QRYWLVSGMHKLDALTRI 243
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E+ G I+F++TK + LA + A+ ++ ++GDI Q+QRERT+ +DG+ +
Sbjct: 244 LEAENFDG--MIIFSRTKLGTEELAQKLQARGFSAAAINGDIQQAQRERTIQQLKDGKID 301
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLDV + +++Y++P+ E++ HR GRTGRAG+ G AIL T ++ +
Sbjct: 302 ILVATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLL 361
Query: 456 KSIER 460
KSIER
Sbjct: 362 KSIER 366
>gi|381204134|ref|ZP_09911205.1| ATP-dependent RNA helicase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 556
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/371 (38%), Positives = 227/371 (61%), Gaps = 8/371 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ +S ++ AL G S+ PIQ+ V+ ++ D+IG+A+TGTGKT AFGIP++
Sbjct: 1 MTFQEMGLSDAVLRALVESGFSEPTPIQEQVIPLQIRHNDVIGQAQTGTGKTAAFGIPLI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+++ ++H L+L PTRELA QV E SL + +YGG I Q+R
Sbjct: 61 ERLSP-RQRHDSKHTMDALILTPTRELASQVTDELRRIGLYKSLSIVTIYGGVSIEQQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G + +VGTPGRV+D + R ++LS V+ VLDEAD+M+ +GF ED++ I++ LP+
Sbjct: 120 TLRRGTNIIVGTPGRVLDHLSRGTIDLSGVRHFVLDEADEMVDMGFIEDIQTIMQSLPEK 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ ++FSATM P I + KY+ +P TV + L IS + +E+ + +
Sbjct: 180 RQILLFSATMSPEIDRIAAKYMSHPSTVSV--SKSNILVPRISQWLHKVKSWERFEGLCR 237
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++T H + ++F QTKRD D L + + Y E LHGD SQ QR++ + FR+ +
Sbjct: 238 ILTYH-RPELALIFCQTKRDVDELYRQLHGRGYKAEALHGDYSQHQRDQVMQKFRNHELD 296
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+LIATD+AARG+D +D++++Y +P ET+VHR GRTGRAG++G A++ + + RQ+
Sbjct: 297 LLIATDLAARGID-SKLDMVVNYNVPENPETYVHRIGRTGRAGREGLAVMFVSPEDYRQL 355
Query: 456 KSIERDVGCRF 466
+IE+ + R
Sbjct: 356 YAIEKLIKIRL 366
>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
Length = 442
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 238/389 (61%), Gaps = 7/389 (1%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+++ S + + L ++ +IV ALA RGI + F IQ+ L A+ G+D+IG+ARTG
Sbjct: 1 MSFQQSETTQPPTFAALGVAAEIVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGM 60
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICV 205
GKTL FG+P+LD++ + P L++ PTRELA QV ++ ++ +L +
Sbjct: 61 GKTLGFGVPVLDRVFDDADIEELDGTPRALIVVPTRELAVQVGEDLTLASQNLPLRLATI 120
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG P Q++ L+ GVD +VGTPGR++DL ++ L L V +VLDEAD+ML +GF D
Sbjct: 121 YGGRPYEEQIKLLEKGVDVIVGTPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLPD 180
Query: 266 VEVILERLPQNR-QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+E ILE L N+ Q+M+FSATMP I +L ++ P+ + + + + +
Sbjct: 181 IEKILELLHGNKHQTMLFSATMPGPILTLARTFMNRPIHIRAESGDENQTHESTRKVTFQ 240
Query: 325 TSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQR 382
+K +II + + AKG GK I+F +TKR A +A +A+ + +HGD+ Q+ R
Sbjct: 241 AHRMDKLAIISRAL--QAKGRGKTIIFARTKRSAAEVADELARRGFRVGAVHGDLGQAAR 298
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442
E++L+AFR+G+ IL+ATDVAARG+DV +V +I+Y++P+ TFVHR GRTGRAG G+
Sbjct: 299 EKSLNAFREGKVEILVATDVAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGT 358
Query: 443 AILIYTDQQARQVKSIERDVGCRFTQLPR 471
A+ + + + + I ++G + P+
Sbjct: 359 AVTLVGYDELGKWQVINDELGLGEPEPPQ 387
>gi|398855296|ref|ZP_10611793.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398232144|gb|EJN18120.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 557
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 244/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +++ +I+AA+A G + IQ+ + M G+DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS V +VLDEAD+ML +GF +D+EVI + LP RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPQHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIG 414
>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
Length = 531
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 223/355 (62%), Gaps = 23/355 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S IV AL +GI+ FPIQ L A++G D+IG+A+TGTGKTL FGIP+L+ +
Sbjct: 43 VSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLENTAGID 102
Query: 166 EK-------HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMR 216
E+ RG+ P LV+ PTRELAKQV +E +A + VYGG Q
Sbjct: 103 EEGWESVPVQARGK-PQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRAYEPQQE 161
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G + VVGTPGR++DL+K L+L+ V+ VVLDEAD+ML +GF EDVE IL P N
Sbjct: 162 ALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKILASTPSN 221
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----EKP 331
R +M+FSATMP + ++ +Y+ P + SD G+++ S+ +Y K
Sbjct: 222 RHTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDT----GVTVKSVRQVVYRCHALNKS 277
Query: 332 SIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAF 389
++ +++ AKG G IVFT+TKR A RLA + + + LHGD+ Q RE+ L AF
Sbjct: 278 EVLARIL--QAKGRGLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAF 335
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444
R+G+ ++L+ATDVAARG+DV +V +I+Y+ P +T++HR GRTGRAG+ G+A+
Sbjct: 336 RNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAV 390
>gi|344199440|ref|YP_004783766.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343774884|gb|AEM47440.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 419
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 226/361 (62%), Gaps = 7/361 (1%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+ I A A RG + PIQ+ + M G D++ A+TGTGKT AF +PIL K+
Sbjct: 7 LGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHKLSA 66
Query: 164 FNEKHGRGRNPL-CLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDY 220
+ RG + + L+L PTRELA QVE+ + + SL ++ + GG I+ QM+ L
Sbjct: 67 TADTAARGPSSVRALILVPTRELAAQVEESVQLYGRYLSLRSLVLIGGVKINPQMQKLRR 126
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
VD +V TPGR++D I++ +++LS V+ +VLDEAD+ML +GF D+ IL LP+ RQ++
Sbjct: 127 SVDVLVATPGRLLDHIQQRSVDLSRVEILVLDEADRMLDMGFIRDIRRILAVLPKKRQNL 186
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT P IR+L + L NP +V++ S AD ++ A K ++ LI E
Sbjct: 187 LFSATFSPEIRALADGLLNNPASVEVA--SRNATADNVAQRVFAVDQDRKRELLAHLIEE 244
Query: 341 HAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
H + G+ +VFT+TK ADRLA H +HGD SQ R R L+ F++G+ +L+A
Sbjct: 245 H-QWGQVLVFTRTKHGADRLAKHLSQDGVQAMAIHGDKSQGARTRALAEFKEGKVRVLVA 303
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TD+AARG+D+ ++ ++++ELP+ E +VHR GRTGRAG G A+ + + ++ +Q++ +E
Sbjct: 304 TDIAARGIDISDLPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQDVE 363
Query: 460 R 460
+
Sbjct: 364 K 364
>gi|417677313|ref|ZP_12326720.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418155567|ref|ZP_12792295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|418157874|ref|ZP_12794590.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|418225966|ref|ZP_12852594.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353820426|gb|EHE00612.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353824322|gb|EHE04496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|353881163|gb|EHE60977.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
Length = 524
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 234/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 229/371 (61%), Gaps = 12/371 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS+ + ++ R G + PIQ+ + M+G+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ K G N L++APTRELA QV +E + ++ + VYGG IS Q+RAL
Sbjct: 65 ---DTKDG---NVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR++D I R L L V ++LDEAD+ML++GF ED++ I+ +P RQ+
Sbjct: 119 NRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + K++K P V + S + + I + + + EK + +L+
Sbjct: 179 LLFSATMPDAIRRIAEKFMKTPEIVKI--KSKEMTVENIEQFYVKSVEREKFDFLSRLLN 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ IVF +TKR D LA A+ + Y E +HGD+SQ++R L F+ G+ +IL+
Sbjct: 237 VQ-QPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+ T ++ + +
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLGIV 355
Query: 459 ERDVGCRFTQL 469
ER + L
Sbjct: 356 ERTTKKKMEAL 366
>gi|422641175|ref|ZP_16704599.1| helicase [Pseudomonas syringae Cit 7]
gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7]
Length = 557
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 244/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P++RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D M N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGDLLDRLTADIG 414
>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 614
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 220/352 (62%), Gaps = 13/352 (3%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L N+
Sbjct: 3 AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNA-DLNQV----- 56
Query: 173 NPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + F E+ P + VYGG P + Q+ AL GV VVGTP
Sbjct: 57 KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ RQ +FSATMPP
Sbjct: 117 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPA 176
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IR + YLK+P V ++ A+ Y + +++ ++ L E G I+
Sbjct: 177 IRRIAQTYLKDPAEV-IIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG--MII 233
Query: 350 FTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+ +IL+ATDVAARGLD
Sbjct: 234 FARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLD 293
Query: 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
V + +++Y++P +E++VHR GRTGRAG+ G AIL T ++ ++SIER
Sbjct: 294 VERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIER 345
>gi|70731602|ref|YP_261343.1| cold-shock DEAD box protein A [Pseudomonas protegens Pf-5]
gi|68345901|gb|AAY93507.1| cold-shock DEAD box protein A [Pseudomonas protegens Pf-5]
Length = 557
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 229/372 (61%), Gaps = 13/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++LK+P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQL 469
IER G + ++
Sbjct: 360 IERVTGQKVAEV 371
>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 642
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 222/365 (60%), Gaps = 19/365 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L ++ ++ AL G + PIQ A + M G D++G+A+TGTGKT AF +P+L ++
Sbjct: 22 SELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRL 81
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
N RN LVLAPTRELA QV + A P + +YGG Q RAL
Sbjct: 82 EAGN------RNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRAL 135
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+DLI+R L+LS ++ +VLDEAD+ML +GF +DV+ I+E+ P RQ
Sbjct: 136 RRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPAGRQ 195
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSIIG 335
+FSATMP IR + K+LK P + + K A ++ Y T +++ ++
Sbjct: 196 VALFSATMPEQIRRVAQKHLKQPKEIKIAS----KTATATTIRQRYWQVTGLHKLDAMTR 251
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L E + +VF +TK A+ LA +A + + CE LHGDI Q RERT+ R G+
Sbjct: 252 LLEVEPYEA--LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQL 309
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+ILIATDV ARGLDV + +++Y++P +E++VHR GRTGRAG+KG AIL ++ R
Sbjct: 310 DILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRM 369
Query: 455 VKSIE 459
+++IE
Sbjct: 370 LRAIE 374
>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
Length = 559
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 226/365 (61%), Gaps = 12/365 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L I ++ A+A G PIQ A + ++G D++G A+TGTGKT AF IPIL
Sbjct: 13 LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPIL 72
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMR 216
KI RN LVLAPTRELA QV + F L + + +YGG+ Q+
Sbjct: 73 SKI------DTDSRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLA 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G VVGTPGRVID +++ +L+LS + ++VLDEAD+ML +GFAEDVE IL P+
Sbjct: 127 GLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEY 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+Q +FSATMPP I+ +T KYL +P+ V + S + A+ I+ S K + +
Sbjct: 187 KQVALFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAENITQRYFLVSYPRKMDALTR 244
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E +G IVF +TK+ + +A + A+ + ++GDI Q+ RERT++ +DG +
Sbjct: 245 LL-ETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTID 303
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLDV + ++++++P+ E++VHR GRTGRAG+ G+A+L T ++ +
Sbjct: 304 ILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLL 363
Query: 456 KSIER 460
+IER
Sbjct: 364 GAIER 368
>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium extorquens CM4]
gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
CM4]
Length = 510
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 221/359 (61%), Gaps = 9/359 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++Q ++ AL G PIQ + PAM+GRD+ G A+TGTGKT AF +PIL ++ +
Sbjct: 9 LAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLD 67
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDYGV 222
+ R LVL+PTRELA Q+ F + P +T+ V+GG I+ Q RA+ GV
Sbjct: 68 SRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTV-VFGGVNITRQERAIAPGV 126
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D +V TPGR+IDL+ R AL L V+ +VLDEADQML +GF ++ I++ LP RQS+ F
Sbjct: 127 DILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFF 186
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I L ++YL NP+ V + + A+ + I K +++ ++ +
Sbjct: 187 SATMPKNIAGLADQYLSNPVQVAVTPVA--TTAERVDQQVIFCHTGAKQALLNHVLRD-P 243
Query: 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
K + +VFT+TK ADR+ + K S +HG+ SQ QRER L+AFRDG +L+ATD
Sbjct: 244 KIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATD 303
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
+AARG+DV V +++Y+LPN E++VHR GRT RAG +G AI D++ ++ IER
Sbjct: 304 IAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDIER 362
>gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
33638]
gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
33638]
Length = 658
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 231/381 (60%), Gaps = 14/381 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S I++AL G K PIQ + + GRD++G A+TG+GKT AFG+P+L I
Sbjct: 10 ADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI 69
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 70 ------DPTLKAPQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGGQRYDVQLRAL 123
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P Q
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K P V + + S + + +K +++ L
Sbjct: 184 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLE 243
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+E I+F +TK +A A+ +S YN L+GD++Q+ RE+TL +DGR +IL
Sbjct: 244 SEDFDA--AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 301
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 302 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQN 361
Query: 458 IERDVGCRF--TQLPRIAVEG 476
+ER + QLP + G
Sbjct: 362 VERTMKLTIPEVQLPNAELLG 382
>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase [Methylobacterium extorquens PA1]
gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
PA1]
gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
Length = 510
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 221/359 (61%), Gaps = 9/359 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++Q ++ AL G PIQ + PAM+GRD+ G A+TGTGKT AF +PIL ++ +
Sbjct: 9 LAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLD 67
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDYGV 222
+ R LVL+PTRELA Q+ F + P +T+ V+GG I+ Q RA+ GV
Sbjct: 68 SRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTV-VFGGVNITRQERAIAPGV 126
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D +V TPGR+IDL+ R AL L V+ +VLDEADQML +GF ++ I++ LP RQS+ F
Sbjct: 127 DILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFF 186
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I L ++YL NP+ V + + A+ + I K +++ ++ +
Sbjct: 187 SATMPKNIAGLADQYLSNPVQVAVTPVA--TTAERVDQQVIFCHTGAKQALLNHVLRD-P 243
Query: 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
K + +VFT+TK ADR+ + K S +HG+ SQ QRER L+AFRDG +L+ATD
Sbjct: 244 KIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATD 303
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
+AARG+DV V +++Y+LPN E++VHR GRT RAG +G AI D++ ++ IER
Sbjct: 304 IAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDIER 362
>gi|399002672|ref|ZP_10705355.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
gi|398124587|gb|EJM14095.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
Length = 557
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLTTVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVGDAESTHGDLLDRLTADIG 414
>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 659
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 226/375 (60%), Gaps = 16/375 (4%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L ++ ++ AL G + PIQ + + GRD+IG+A TGTGKT AF +P+
Sbjct: 89 GVRFADLGLAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPM 148
Query: 158 LDKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQ 214
L ++ + E+ G RG PL LVLAPTRELA QV + L + VYGG PI Q
Sbjct: 149 LQRLAQ--ERRGSRGTAPLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQ 206
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GVD VV TPGR IDLI R AL+L E++ VVLDEAD+ML +GF ED+E IL+ P
Sbjct: 207 LGALKRGVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATP 266
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP--- 331
RQ+++FSATMP I L YL +P+ V + +++ +G + + Y P
Sbjct: 267 DTRQAVLFSATMPRRIEVLARTYLTDPVLVRI---QREEVPEG-EAPRVRQTAYMVPRSH 322
Query: 332 --SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSA 388
+ +G+++ E + IVF +T+ D D + A+ + E LHG + Q R R +
Sbjct: 323 TTAALGRIL-ELERPTAAIVFCRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDR 381
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
R+GR ++L+ATDVAARGLD+ + ++++++P + E++VHR GR GRAG++G AI +
Sbjct: 382 LRNGRTDLLVATDVAARGLDIDQLTHVVNHDVPKSPESYVHRIGRVGRAGREGVAITLVA 441
Query: 449 DQQARQVKSIERDVG 463
R +++IER G
Sbjct: 442 PASVRHLRNIERLTG 456
>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 642
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 228/363 (62%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L ++ I+ A+A G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL ++
Sbjct: 11 SELGLAAPILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTGAFALPILSRL 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ + L+LAPTRELA QV + A P + +YGG+ Q+RAL
Sbjct: 71 ------NLTQMDTQVLILAPTRELAIQVAEACQSYAQFIPDFHVLPIYGGSSYDSQLRAL 124
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+D+++R L+LS ++ +VLDEAD+ML +GF +DVE ++E+ P +RQ
Sbjct: 125 RRGAQVVVGTPGRVMDMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEWVIEQCPLDRQ 184
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSATMP IR + +++LK P+ + + + A+ Y + + +++ ++ L
Sbjct: 185 IALFSATMPEQIRRIAHRHLKTPVEIKIASKTSTA-ANIRQRYWLVSGLHKLDAMTRMLE 243
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E +VF +TK A+ L + A+ ++CE LHGDI Q RERT+ + G+ +IL
Sbjct: 244 VEQYDA--LLVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDIL 301
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+ G AIL ++ R ++
Sbjct: 302 IATDVAARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLRM 361
Query: 458 IER 460
IE+
Sbjct: 362 IEQ 364
>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 520
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 231/379 (60%), Gaps = 20/379 (5%)
Query: 79 HAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
H + A D A D + +E + +S IV ALA +GIS FPIQ L A++G D
Sbjct: 18 HNEPAADIEAAGKDLNLEEKT-FADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSD 76
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFH 194
+IG+A+TGTGKTL FGIP++++ I +E P L + PTRELAKQV ++
Sbjct: 77 IIGQAKTGTGKTLGFGIPMIERCIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLR 136
Query: 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
++A S+ + VYGG Q++ L+ G + +VGTPGR+IDL+K LNL V+ VVLD
Sbjct: 137 DAAKNRSIRIVEVYGGRAYEPQIKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLD 196
Query: 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
EAD+ML +GF EDVE IL P R +M+FSATMP + ++ +Y+ + + D+
Sbjct: 197 EADEMLDLGFLEDVEKILSATPPTRHTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDE 256
Query: 313 KLADGISLYSIATSMY-----EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAM-A 365
++ S+ +Y K ++ +++ A+G G I+FT+TKR A R+A + A
Sbjct: 257 ----STTVQSVRQVVYRAHALNKIEVLARIL--QARGRGLTIIFTRTKRTAARVAEDLAA 310
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425
+ + LHGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV NV +I+Y+ P +
Sbjct: 311 RGFATGALHGDLGQGAREQALRAFRHGKIDVLVATDVAARGIDVDNVTHVINYQAPEDEK 370
Query: 426 TFVHRTGRTGRAGKKGSAI 444
T+VHR GRTGRAG G+AI
Sbjct: 371 TYVHRIGRTGRAGHSGTAI 389
>gi|422682884|ref|ZP_16741147.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 559
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D M N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGDLLDRLTADIG 414
>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase [Pelodictyon phaeoclathratiforme BU-1]
gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 599
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 228/382 (59%), Gaps = 15/382 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D L +++ ++ ALA G PIQ + ++GRD++G+A+TGTGKT AF +PIL
Sbjct: 1 MDFLGLQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
I + +H P LVLAPTRELA QV + F A L + +YGG Q+
Sbjct: 61 SNI---DLEHA---EPQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQL 114
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L GV VVGTPGRV+D ++R +LNL+ ++ +VLDEAD+ML +GF +DVE IL++ P+
Sbjct: 115 RMLRRGVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPK 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + KYL NP V + + D I K I+
Sbjct: 175 GRQVALFSATMPPVIRRIAQKYLHNPAEVTI--QTKTTTVDTIRQRYWIVGGSHKIDILT 232
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ G ++F +TK LA + A+ Y L+GD+ Q+QRERT+ ++G
Sbjct: 233 RILEVEPFDG-MLIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGAL 291
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+I+IATDVAARGLDV + +I+Y++P+ +E++VHR GRTGRAG+ G AIL + ++
Sbjct: 292 SIVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNM 351
Query: 455 VKSIERDVGCR--FTQLPRIAV 474
+ SIER R +LP V
Sbjct: 352 LYSIERATHSRIELMELPTTEV 373
>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 605
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 225/372 (60%), Gaps = 15/372 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S+ ++ AL G K PIQ A ++P M +D++G+A+TGTGKT AF +P+L+ I
Sbjct: 10 ELGLSEPLLRALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLLNSID 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F + + + +YGG + Q+ +L
Sbjct: 70 PTTNA------PQILVLAPTRELAVQVAEAFASYSKFMKGMHVLPIYGGQSMQQQLNSLR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L+ ++ +VLDEAD+ML +GF +D+E ILE PQ RQ
Sbjct: 124 RGPQIIVGTPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQERQL 183
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NKYL NP+ V + + + I + S + K +++ L
Sbjct: 184 ALFSATMPEQIKRVANKYLDNPVHVKIAATT--TTVETIEQRFVQVSQHNKLEALVRVLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +I+
Sbjct: 242 VEKTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDII 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + +++Y++P +E +VHR GRTGRAG+ G AIL T ++ R +++
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359
Query: 458 IERDVGCRFTQL 469
IER R + +
Sbjct: 360 IERATKSRISPM 371
>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
Length = 606
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 222/376 (59%), Gaps = 17/376 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ Q I+ L G PIQ + ++GRD++G+A+TGTGKT AF +P+L KI
Sbjct: 14 LELCQPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLLSKI-- 71
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F E L + +YGG Q++ L
Sbjct: 72 ----DLELRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKR 127
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRV+D ++R L L ++ +VLDEAD+ML +GF +DVE ILE+ P N Q+
Sbjct: 128 GVHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNHQTA 187
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQLIT 339
+FSATMP IR + YLK+P + + + + AD I Y +A ++ ++ L
Sbjct: 188 LFSATMPEAIRRIAGNYLKSPQEITVKDKT--RTADTIRQRYWLAKGHHKLDALTRILEA 245
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E G I+F +TK L+ + A+ + PL+GDI Q QRERT+ + G NI+I
Sbjct: 246 EETDG--VIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVI 303
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV + +I+Y+LP SE +VHR GRTGRAG+ G AI+ + ++ R + I
Sbjct: 304 ATDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSGI 363
Query: 459 ERDVGCRF--TQLPRI 472
ER + + +LP I
Sbjct: 364 ERAIKLKIERMELPSI 379
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/364 (42%), Positives = 224/364 (61%), Gaps = 12/364 (3%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ A+ G + PIQ + AM G DMIG+A+TGTGKT AFGIP+++KI NE+
Sbjct: 13 VLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLINKI-SINEERI 71
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
+ L++ PTRELA QV E + L ++ +YGG I Q+RAL ++G
Sbjct: 72 -----VALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRALKKKPQIIIG 126
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR++D I R + L +VQ VVLDEAD+ML +GF ED++ IL+++P+ RQ+++FSATMP
Sbjct: 127 TPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPEERQTLLFSATMP 186
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
P I+ L ++LKNP V ++ S Q A I +K + +L+ +
Sbjct: 187 PNIQKLAQQFLKNPEHVAVI--SKQVTAPTIQQNYFEVHERQKFEALCRLL-DMESPELA 243
Query: 348 IVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
I+F +TKR D L+ + K Y + LHGD+SQ+QR+ + FRDG ++L+ATDVAARG
Sbjct: 244 IIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARG 303
Query: 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
LDV V +I+++LP E++VHR GRTGRAGK+GSA T ++ + IE+ R
Sbjct: 304 LDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLHFIEKVTRQRI 363
Query: 467 TQLP 470
++ P
Sbjct: 364 SKKP 367
>gi|408382716|ref|ZP_11180258.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
formicicum DSM 3637]
gi|407814518|gb|EKF85143.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
formicicum DSM 3637]
Length = 526
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L +S ++ A+A G + PIQ L P + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESLLFEDLKLSPEMKRAIADMGFEEATPIQSLALPPILDGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L+K+ + +G ++L PTRELA QV +E + + T + VYGG PI Q
Sbjct: 62 VLEKL----DPTVKGVQ--AIILCPTRELAIQVAEEIKKLSKYKKTSVLPVYGGQPIERQ 115
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV ++GTPGRV+D I R L + +V+ ++LDEAD+ML +GF +D+E +LE +
Sbjct: 116 IKALKRGVQIIIGTPGRVMDHIHRRTLRMDQVKMIILDEADEMLDMGFRDDIEFVLEHVS 175
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE----- 329
RQ ++FSATM I +T KY NP +++ + Q+ I++ I +E
Sbjct: 176 HERQMLLFSATMSRQILGITRKYQNNP---EMLKVAHQE----ITVPEIQQIYFEVKEQM 228
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
K ++ +LI H +VF TKR DRL + + Y + LHGD+SQ+QR+R ++
Sbjct: 229 KLDLLTRLIDMH-NLKLALVFCNTKRRVDRLVSNLQTRGYFADGLHGDMSQNQRDRVMNK 287
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
FR G+ IL+ATDVAARG+DV +V+ + +Y++PN E +VHR GRTGRAG+ G A +
Sbjct: 288 FRKGQIEILVATDVAARGIDVDDVEAVFNYDVPNNEEYYVHRIGRTGRAGRTGQAFTFAS 347
Query: 449 DQQARQVKSIERDVGCRFTQ 468
++ Q++ I+R R Q
Sbjct: 348 GKEIYQLRDIQRYTKVRIEQ 367
>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 527
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 229/368 (62%), Gaps = 14/368 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S L++ + ++ A+ G + IQ + + G DMIG+A+TGTGKTLAFG P
Sbjct: 2 ENIKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I E + LVL PTRELA QV E A T + VYGG PI Q
Sbjct: 62 VLSQI----ESSDKIS---ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQ 114
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+++L GVD VVGTPGR++D IKRN L+LS V F+VLDE+D+ML++GF +D+E I++ L
Sbjct: 115 IKSLRRGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLN 174
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
++RQ+++FSATMP I L +KY+KN + + +V +S + I Y ++
Sbjct: 175 KDRQTLLFSATMPKEIAKLASKYMKNEVKHIKIVKNS--LTVEKIKQYYYEVKHKDRFES 232
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ + I + + I+F +TKR D L +M A+ YN E +HGD+ Q+QR TL F++G
Sbjct: 233 LCR-ILDIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEG 291
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ L+ATDVAARG+DV +V +I+Y+LP E++VHR GRTGRA K+G A + T ++
Sbjct: 292 TLDFLVATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREY 351
Query: 453 RQVKSIER 460
+K +E+
Sbjct: 352 IMIKQLEK 359
>gi|421241060|ref|ZP_15697605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395607438|gb|EJG67535.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
Length = 524
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 233/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 551
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/358 (43%), Positives = 220/358 (61%), Gaps = 7/358 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+++ I+ AL G PIQ L PAM+GRD+ G A+TGTGKT AF +PIL ++ N
Sbjct: 47 LAEPILRALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLEN 106
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
+ R R LVL+PTRELA Q+ + F + L + V+GG IS Q RA+ GVD
Sbjct: 107 RRAPR-RGCRVLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAIAPGVD 165
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+V TPGR+IDL+ R AL L V+ +VLDEADQML +GF ++ I++ LP RQS+ FS
Sbjct: 166 ILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFS 225
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP I L ++YL NP+ V + + A+ + I K +++ ++ + K
Sbjct: 226 ATMPKNIAGLADQYLSNPVQVAVTPVA--TTAERVDQQVIFCHTGAKQALLNHVLRD-PK 282
Query: 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
+ +VFT+TK ADR+ + K +HG+ SQ QRER L+AFRDG +L+ATD+
Sbjct: 283 IERVLVFTRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDI 342
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
AARG+DV V +++Y+LPN E++VHR GRT RAG +G AI D++ ++ IER
Sbjct: 343 AARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDIER 400
>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 493
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/384 (41%), Positives = 229/384 (59%), Gaps = 24/384 (6%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
GLD S +V A+ G ++ PIQ+ +E + G+D+IG+A+TGTGKT AFGIP+
Sbjct: 8 GLDAS-------VVQAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPL 60
Query: 158 LDKIIKFNEKHGRGRNPLC--LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
+++I NPL LVLAPTRELA QVE+ + + T VYGG
Sbjct: 61 VNRI--------DSSNPLVQGLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGK 112
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L +V TPGR++D ++R + L ++ VVLDEAD+ML++GF ED+E IL
Sbjct: 113 QIRSLKQRPHIIVATPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAET 172
Query: 274 PQN-RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
PQ RQ+++FSATMP + SL +K++KNP + + + + + I+ I EK
Sbjct: 173 PQETRQTLLFSATMPKRMESLASKFMKNPTRIAV--KAKEVTMENIAQQFIEVHEREKFD 230
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRD 391
++ +LI + IVF +TKR D LA A+ K Y E LHGD++Q++R L F++
Sbjct: 231 VLCRLI-DLETPDLSIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKE 289
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G ++L+ATDVAARGLD+ V + +++LP E++VHR GRTGRAG+ G AI + T +
Sbjct: 290 GLIDVLVATDVAARGLDISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPE 349
Query: 452 ARQVKSIERDVGCRFTQLPRIAVE 475
VK IE R TQ P+ E
Sbjct: 350 REHVKLIESVSKRRMTQRPKPTYE 373
>gi|384515128|ref|YP_005710220.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
gi|334696329|gb|AEG81126.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
Length = 441
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 220/366 (60%), Gaps = 4/366 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD++
Sbjct: 11 AELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDRV 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ P LV+ PTRELA+QV ++ +A + VYGG P Q+ LD
Sbjct: 71 FDAADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGGRPYEEQIHVLD 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD V GTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q+
Sbjct: 131 KGVDVVAGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEKLLGALTHQHQT 190
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 191 LLFSATMPGPVLTLARTFMLRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARALQ 250
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H +G K I+FT+TKR A LA +A + + +HGD+ Q+ RE +LS FRD R +IL+
Sbjct: 251 AHERG-KTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLSMFRDSRVDILV 309
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ +V +I+Y+ P+ T+VHR GRTGRAG G+AI + + + K I
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAITLVGYDELTKWKII 369
Query: 459 ERDVGC 464
++G
Sbjct: 370 SDELGL 375
>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
indolifex HEL-45]
gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
indolifex HEL-45]
Length = 438
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 228/368 (61%), Gaps = 7/368 (1%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D + + + +VA L G+ PIQ+ + AM GRD++G A+TGTGKT AFG+P+L
Sbjct: 3 DFDMMGLPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLA 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
++++ E R+ LVLAPTRELA+Q+ + + V GG I+ Q++
Sbjct: 63 QMMEL-EGRPEPRSVRGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKR 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ GVD ++ TPGR++DL+ R A+ L F+VLDEADQML +GF D+ I +P+ R
Sbjct: 122 LERGVDLLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKER 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+M+FSATMP + + N YL +P+ +++ K AD ++ + EK ++ +L
Sbjct: 182 QTMLFSATMPKLMNEIANSYLNSPIRIEV--SPPGKAADKVTQEVHFIAKAEKTELLKEL 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ +H KG + +VF +TK +++L + K+ ++ +HG+ SQ QR+R ++ F+ G +
Sbjct: 240 LAKH-KGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDITV 298
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLD+P+V + ++ELPN + +VHR GRT RAGK G+A+ + ++K
Sbjct: 299 LVATDVAARGLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEMGELK 358
Query: 457 SIERDVGC 464
+I++ +G
Sbjct: 359 AIQKTMGI 366
>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
Length = 374
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 229/368 (62%), Gaps = 14/368 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S L++ + ++ A+ G + IQ + + G DMIG+A+TGTGKTLAFG P
Sbjct: 2 ENIKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I ++ LVL PTRELA QV E A T + VYGG PI Q
Sbjct: 62 VLSQIESSDKISA-------LVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQ 114
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+++L GVD VVGTPGR++D IKRN L+LS V F+VLDE+D+ML++GF +D+E I++ L
Sbjct: 115 IKSLRRGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLN 174
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
++RQ+++FSATMP I L +KY+KN + + +V +S + I Y ++
Sbjct: 175 KDRQTLLFSATMPKEIAKLASKYMKNEVKHIKIVKNS--LTVEKIKQYYYEVKHKDRFES 232
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ + I + + I+F +TKR D L +M A+ YN E +HGD+ Q+QR TL F++G
Sbjct: 233 LCR-ILDIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEG 291
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ L+ATDVAARG+DV +V +I+Y+LP E++VHR GRTGRA K+G A + T ++
Sbjct: 292 TLDFLVATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREY 351
Query: 453 RQVKSIER 460
+K +E+
Sbjct: 352 IMIKQLEK 359
>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
proteoclasticus B316]
gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
B316]
Length = 711
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 234/381 (61%), Gaps = 31/381 (8%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V YD+S GLD + I+ A++ G + PIQKA + +QG+D+IG+A+TGT
Sbjct: 59 VRYDES----GLD-------ERIIRAVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGT 107
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTIC 204
GKT AFGIP+L ++ N KH + +VL PTRELA Q ++F + + +
Sbjct: 108 GKTAAFGIPLLHQVDPAN-KHLQ-----AVVLCPTRELAMQAADDIRDFAKYMFGIKVLA 161
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG IS Q++AL GV VVGTPGRV+D ++R+ + + +V+ +VLDEAD+ML +GF E
Sbjct: 162 VYGGQDISRQIKALSNGVQIVVGTPGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFRE 221
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
D+E IL+ +P RQ+ +FSATMP I +T Y K+ + + I++ +I
Sbjct: 222 DIETILQGMPMERQTALFSATMPEAILKITKTYQKSD------AEYIKMTPKEITVAAIE 275
Query: 325 TSMYEKPSIIGQ----LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQ 379
+ Y P + + + ++ + ++F TKR D+LA ++ K Y + LHGD+SQ
Sbjct: 276 QAYYRVPQKLKEDVLVRLMDYYNPARSLIFCNTKRMVDQLAESLKGKGYLADGLHGDLSQ 335
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
+QR+ ++ FR+GR NILIATDVAARG+DV V+ + +Y++P E +VHR GRTGRAG+
Sbjct: 336 NQRDTVMNLFRNGRINILIATDVAARGIDVSGVEAVFNYDIPEDIEYYVHRIGRTGRAGR 395
Query: 440 KGSAILIYTDQQARQVKSIER 460
G + + ++ +++ IE+
Sbjct: 396 SGMSFTLVGGREMYKLREIEK 416
>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
Length = 617
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 226/368 (61%), Gaps = 23/368 (6%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +++ A+ +G + PIQ + ++G D++G+A+TGTGKT AF +P+L +I
Sbjct: 11 ASLGLDANVLKAVVDQGYEQPSPIQAQSIPHLLEGHDLLGQAQTGTGKTAAFALPLLSRI 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ + +N LVLAPTRELA QV + F A P + +YGG Q+R L
Sbjct: 71 ------NPKDKNTQLLVLAPTRELAIQVSEAFQTYARNIPDFHVLPIYGGMSYDTQLRQL 124
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRV+D I+R L L +Q +VLDEAD+ML +GF +DVE ILE P+ RQ
Sbjct: 125 RRGVQVVVGTPGRVMDHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQ 184
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL- 337
+FSATMP IR + N++L NP V +V K A S+ T Y + S + +L
Sbjct: 185 IALFSATMPSVIRQVANRHLNNPKEVKIVT----KTATNTSI----TQKYWQVSGLHKLD 236
Query: 338 ----ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I E ++ I+F +TK LA + A+ + CE L+GDISQ+ RERT+ + G
Sbjct: 237 ALTRILEMSEHDGMIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRG 296
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+ +IL+ATDV ARGLD+ + +++Y++P +E++VHR GRTGRAG+ G+AIL ++
Sbjct: 297 QIDILVATDVVARGLDIDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRER 356
Query: 453 RQVKSIER 460
R +++IER
Sbjct: 357 RMLQAIER 364
>gi|343924703|ref|ZP_08764245.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
gi|343765383|dbj|GAA11171.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
Length = 595
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/370 (40%), Positives = 225/370 (60%), Gaps = 13/370 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L+I + AA+ G PIQ A + P M GRD++G A+TGTGKT AF IPIL ++
Sbjct: 28 LEIESRVRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRL-- 85
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDY 220
R P L+LAPTRELA QV + F P + + +YGG Q+ L
Sbjct: 86 ----DTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRR 141
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G +VGTPGRVID + + L++S ++F+VLDEAD+ML++GFAEDVE IL P +Q
Sbjct: 142 GAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA 201
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR L +YLK+P + + S A I+ + S K + + + E
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFL-E 258
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TK+ + LA + ++ + ++GD++Q+QRERT++ ++G +IL+A
Sbjct: 259 VEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILVA 318
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L + ++ +++IE
Sbjct: 319 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAIE 378
Query: 460 RDVGCRFTQL 469
R T++
Sbjct: 379 RATRQELTEI 388
>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 615
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/397 (39%), Positives = 240/397 (60%), Gaps = 17/397 (4%)
Query: 80 AQSAVDDYVAYDDS--SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
A SAV A ++ D+G L +S ++ A+ G IQ A + +QGR
Sbjct: 6 ADSAVSTTPATEEPIVEADQGPTFDSLGLSAGVLEAVKALGYETPSAIQAATIPTLLQGR 65
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +P+L + + P LVLAPTRELA QV + F A
Sbjct: 66 DVVGLAQTGTGKTAAFALPVLSNLDVYQNA------PQALVLAPTRELALQVCEAFERYA 119
Query: 198 PSLD---TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
+LD + VYGG Q+ AL GV VVGTPGR++D +++ L+LS+++F+VLDEA
Sbjct: 120 SNLDGVRILPVYGGQGYGPQLTALRRGVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEA 179
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GFAEDVE IL P+++Q +FSATMP IR L+ KYL++ + + +
Sbjct: 180 DEMLNMGFAEDVETILAETPEDKQVALFSATMPAQIRRLSKKYLRDAEEISVKAKTQTNT 239
Query: 315 ADGISLYSIATSMYEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEP 372
I+ + S +K + +++ E+ +G IVFT+TK + + LA + A+ +
Sbjct: 240 --NITQRYLMVSYPQKVDALTRILEVENFEG--MIVFTRTKSETESLAEKLRARGFAATA 295
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTG 432
++GDI+Q+QRE+T++ +DG +IL+ATDVAARGLDV + +++Y+LP E +VHR G
Sbjct: 296 INGDIAQAQREKTVNQLKDGSLDILVATDVAARGLDVERISHVVNYDLPTDVEAYVHRIG 355
Query: 433 RTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
RTGRAG+ G AI T ++ +++IE+ + Q+
Sbjct: 356 RTGRAGRTGDAISFVTPRERWLLRAIEKHTKAQPVQM 392
>gi|430002887|emb|CCF18668.1| ATP-dependent RNA helicase protein [Rhizobium sp.]
Length = 697
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/353 (43%), Positives = 220/353 (62%), Gaps = 8/353 (2%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I ALA+RG + L P+Q+A+L+PA+Q D + A+TG+GKT+AFGI + ++ E+
Sbjct: 11 IAKALAKRGYATLTPVQQAMLDPALQTSDALVSAQTGSGKTVAFGIAMAPTLLDDGERFE 70
Query: 170 RGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
R PL LV+APTRELA QV +E +E ++ CV GG I + RAL+ G VV
Sbjct: 71 RAGAPLALVIAPTRELAMQVNRELAWLYEMTGAVIASCV-GGMDIRSERRALERGAHIVV 129
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR+ D I+RNAL++SE++ VLDEAD+ML +GF ED+E IL+ P+ R+++MFSAT+
Sbjct: 130 GTPGRICDHIRRNALDMSELRVAVLDEADEMLDLGFREDLEFILDAAPEGRRTLMFSATV 189
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P I L +Y ++ + + + Q +A S E +II L AK
Sbjct: 190 PSGIAKLAKRYQRDAVRISTTAEEKQHADIEYRALLVAPSDREN-AIINALRFYDAKN-- 246
Query: 347 CIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
IVF T+ + L A ++++ L G+++Q++R L A RDGR + IATDVAAR
Sbjct: 247 AIVFCSTRAAVNHLTARFNNRNFDVVALSGELTQNERTHALQAMRDGRARVCIATDVAAR 306
Query: 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
G+D+P +DL+IH +LP SET +HR+GRTGRAG KG + LI Q R+ + +
Sbjct: 307 GIDLPGLDLVIHADLPTNSETLLHRSGRTGRAGNKGVSALIVPVNQRRKAERL 359
>gi|374372577|ref|ZP_09630240.1| DEAD/DEAH box helicase domain protein [Niabella soli DSM 19437]
gi|373235322|gb|EHP55112.1| DEAD/DEAH box helicase domain protein [Niabella soli DSM 19437]
Length = 549
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 232/375 (61%), Gaps = 22/375 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKII 162
L I + ++ +L + G PIQ+ + +QG +D IG A+TGTGKT AFG+P+L I
Sbjct: 7 LGIEEGLLQSLQKIGFKTPTPIQEQAIPVLLQGTKDFIGLAQTGTGKTAAFGLPLLQLIN 66
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
K +P L++ PTREL Q+ + P ++ VYGGT IS Q+R +
Sbjct: 67 K------AFVSPQALIICPTRELCLQIANDLQSFKPENGNVHVTAVYGGTAISQQIREIR 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G VV TPGR+IDLI+R A+NL+++ +VVLDEAD+ML++GF +D+E IL+ P + +
Sbjct: 121 RGTHIVVATPGRLIDLIERKAINLNDIHYVVLDEADEMLNMGFKDDIEFILKETPNRQST 180
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI----IG 335
+FSATMP IR ++ +Y++NP + VG A+ +++ +IA Y+ I
Sbjct: 181 WLFSATMPKEIRQVSKRYMENPFEIT-VGK-----ANSVNV-NIAHQYYQTQHINRYETL 233
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
+ I + G I+FT+TK DA + + + Y+ E LHGD++Q+QR++ ++ FR+
Sbjct: 234 KRIIDFNPGLYGIIFTRTKADAQHITEQLIREGYDIEALHGDLTQAQRDKVMARFREKSL 293
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+LIATDVAARG+DV + +I+YELP+ +E + HR+GRTGRAG G +I I T ++ +
Sbjct: 294 ELLIATDVAARGIDVQGITHVINYELPDDTEVYTHRSGRTGRAGLSGISISIVTPKELYR 353
Query: 455 VKSIERDVGCRFTQL 469
++ IE+ V +F ++
Sbjct: 354 LRQIEKLVNTKFNKI 368
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 230/370 (62%), Gaps = 12/370 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ + G + PIQ A + ++ G+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 6 ELGLSPALLKSIDQLGFEEATPIQAATIPKSLDGKDLIGQAQTGTGKTAAFGIPLMEKID 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDY 220
N H +G +++APTRELA QV +E ++ + + VYGG I Q+RAL
Sbjct: 66 TKNH-HIQG-----MIIAPTRELAIQVSEELYKIGYHKRVRILAVYGGQDIQRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L + +VLDEAD+ML++GF +D+E IL +P+ RQ++
Sbjct: 120 QPHVIVGTPGRILDHINRQTLKLDHLHTLVLDEADEMLNMGFIQDIETILSHMPKERQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR++ K++KNP V + + + I Y I EK ++ +L+
Sbjct: 180 LFSATMPEPIRAIAEKFMKNPELVQV--KAKEMTVPQIEQYFIKIQEREKFDVLSRLLDV 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L A+ + Y+ E +HGD+SQ +R L F++G+ ++L+A
Sbjct: 238 QS-PELAIVFGRTKRRVDELTRALTLRGYSAEGIHGDLSQMKRLNVLKKFKEGKVDVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + +Y++P E++VHR GRTGRAGK+G AI + ++ ++ +E
Sbjct: 297 TDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGIAITFVSPREMGYLREVE 356
Query: 460 RDVGCRFTQL 469
R R T +
Sbjct: 357 RTTKKRMTPM 366
>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|387757824|ref|YP_006064803.1| DEAD/DEAH box helicase [Streptococcus pneumoniae OXC141]
gi|418133033|ref|ZP_12769904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418232585|ref|ZP_12859172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418237043|ref|ZP_12863610.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419467196|ref|ZP_14007077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419480433|ref|ZP_14020238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500133|ref|ZP_14039827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|419512979|ref|ZP_14052611.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517184|ref|ZP_14056800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283724|ref|ZP_15734510.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|421299049|ref|ZP_15749736.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|353804916|gb|EHD85194.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353887312|gb|EHE67092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353892004|gb|EHE71754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379542943|gb|EHZ08095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379570387|gb|EHZ35351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599441|gb|EHZ64224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|379634144|gb|EHZ98709.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639257|gb|EIA03801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395880410|gb|EJG91462.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|395900520|gb|EJH11458.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|429316448|emb|CCP36148.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034156]
gi|429321608|emb|CCP35074.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994039]
gi|429323428|emb|CCP31115.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994038]
Length = 524
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 234/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|398871550|ref|ZP_10626864.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398889966|ref|ZP_10643708.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398924907|ref|ZP_10661514.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398952042|ref|ZP_10674504.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|426408349|ref|YP_007028448.1| ATP-dependent RNA helicase DeaD [Pseudomonas sp. UW4]
gi|398155539|gb|EJM43978.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|398172788|gb|EJM60643.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398188885|gb|EJM76176.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398206106|gb|EJM92879.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|426266566|gb|AFY18643.1| ATP-dependent RNA helicase DeaD [Pseudomonas sp. UW4]
Length = 557
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVAEAESTHGDLLDRLTADIG 414
>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 428
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 224/367 (61%), Gaps = 16/367 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + + +S ++ AAL + PIQ A++ A++GRD++G+ARTGTGKT AFGIPI+
Sbjct: 4 INYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPII 63
Query: 159 DKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+++ +HG RNP L+L PTRELA QV E + ++ + VYGG P+ QM
Sbjct: 64 ERL-----EHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQM 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L VVGTPGRVIDL+ R AL L ++ VVLDEAD+ML +GF D+E IL R P+
Sbjct: 119 EKLKRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPE 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++ SAT+PP I L +Y++NP VD + A+ I +K ++
Sbjct: 179 ERQTLLLSATVPPTIEKLAQRYMRNPEKVDFSPTNIS--AETIEQRYFTVDHSKKFDMLV 236
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDG 392
+L+ + + K IVF +TKR +R+ ++K +C +HGD+ Q R R LS F+
Sbjct: 237 ELL-KREQPQKAIVFCRTKRGTERITQRLSKKTKLVHC--IHGDMQQGARNRALSDFKAS 293
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F +L+ATDV RG+D+ +V II+Y++P S+ +VHR GRTGR GK+G A T ++
Sbjct: 294 KFRVLVATDVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEG 353
Query: 453 RQVKSIE 459
++ IE
Sbjct: 354 NELTRIE 360
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/386 (40%), Positives = 232/386 (60%), Gaps = 16/386 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+ + ++ A+ G + PIQ+ + AM+GRD+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SEFGLEPKVLRAITEMGFEESTPIQEKAIPIAMEGRDLIGQAQTGTGKTAAFGIPLINKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
E+ + L++ PTRELA QV +E + + ++ +YGG I Q+RAL
Sbjct: 65 DIKEERI------VALIMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRALR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
++GTPGR++D I R + L +VQ V+LDEAD+ML +GF ED++ IL+ +P RQ+
Sbjct: 119 KKPQIIIGTPGRLLDHINRKTIKLDDVQTVILDEADEMLDMGFMEDIQSILKLVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP I+ L ++L NP V ++ Q A I I +K + +LI
Sbjct: 179 MLFSATMPINIQKLAQQFLSNPEHVSVI--PKQVSAPLIDQSYIELHERQKFEALCRLID 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A I+F +TKR D L+ A+ K Y E LHGD+SQ+QR+ + FRDG ++L+
Sbjct: 237 MEAPD-LAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLDV V +I+++LP E++VHR GRTGRAGK+G+A T ++ + I
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREIDHLHFI 355
Query: 459 ERDVGCRFTQLPRI----AVEGGGDM 480
E+ + ++ P A+EG M
Sbjct: 356 EKITRHKISRKPMPSLAEAIEGKQKM 381
>gi|375140808|ref|YP_005001457.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359821429|gb|AEV74242.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 562
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 228/374 (60%), Gaps = 12/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L L I ++ A+ G IQ A + ++G D++G A+TGTGKT AF IPIL
Sbjct: 13 LTFDDLQIHPSVLQAVKEVGYESPSAIQAATIPAMLKGSDVVGLAQTGTGKTAAFAIPIL 72
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMR 216
KI R LVLAPTRELA QV + F L + + VYGG+ Q+
Sbjct: 73 SKI------DTNSRTTQALVLAPTRELALQVAEAFSRYGAHLHVNVLPVYGGSSYGPQLA 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G VVGTPGRVID +++ L++S + ++VLDEAD+ML +GFAEDVE IL P+
Sbjct: 127 GLKRGAQIVVGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERILADTPEY 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+Q +FSATMPP I+ +T+KYL P+ V + S + A+ I+ I S K + +
Sbjct: 187 KQVALFSATMPPAIKKITSKYLHGPVEVTV--KSKTQTAENITQRYIQVSYPRKMDALTR 244
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E +G IVF +TK+ + +A + A+ ++ ++GDI Q+ RERT+++ +DG +
Sbjct: 245 LL-EVEQGDAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTINSLKDGSLD 303
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLDV + ++++++P+ E++VHR GRTGRAG+ G+A+L T ++ +
Sbjct: 304 ILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLL 363
Query: 456 KSIERDVGCRFTQL 469
KSIER + ++
Sbjct: 364 KSIERVTRQKLVEI 377
>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 628
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 230/372 (61%), Gaps = 13/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S+ ++ ++ +G PIQ A + ++GRD++G+A+TGTGKT AF +P+L +
Sbjct: 8 NELGLSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLS-M 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
I ++ R+P LVLAPTRELA QV + F + A + + +YGG Q+R L
Sbjct: 67 IDIDQ-----RDPQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+D I+R LNLS ++ +VLDEAD+ML +GF +DV+ +LE+LP+ RQ
Sbjct: 122 KRGAHVVVGTPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSATMP IR + +LKNP V + + A I S K + +++
Sbjct: 182 IALFSATMPAVIRKIAQSHLKNPQHVTIKDKT--TTAPTIRQRFWMVSGRNKIDALTRIL 239
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
G I+F +TK D +A + A+ Y L+GD+ QSQRE+ ++ + G+ +I+
Sbjct: 240 EFEPFDG-MIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIV 298
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +I+Y++P+ +E++VHR GRTGRAG+KG AIL ++ R + S
Sbjct: 299 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYS 358
Query: 458 IERDVGCRFTQL 469
IE+ R QL
Sbjct: 359 IEKATNQRVEQL 370
>gi|430763020|ref|YP_007218876.1| Cold-shock DEAD-box protein A [Thioalkalivibrio nitratireducens DSM
14787]
gi|430012644|gb|AGA35396.1| Cold-shock DEAD-box protein A [Thioalkalivibrio nitratireducens DSM
14787]
Length = 650
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/362 (41%), Positives = 219/362 (60%), Gaps = 12/362 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L +S + A+ R G + P+Q A + + GRD++G A+TGTGKT AFG+P+++++
Sbjct: 8 SELGLSGPLALAVERLGFQQPTPVQAACIPALLSGRDVLGEAQTGTGKTGAFGLPLIERV 67
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRAL 218
R LVL PTRELA QV F E +D + VYGG P+ Q+R L
Sbjct: 68 DAGE------RRVQALVLTPTRELANQVAAALGGFAEGIGGIDILPVYGGQPMGAQLRRL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRV+D IKR L L ++ VVLDEAD+ML +GF ED+E ILE+ P RQ
Sbjct: 122 REGPKIVVGTPGRVVDHIKRGTLALEGLRLVVLDEADEMLRMGFIEDIEWILEQTPAERQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR + +++L+ P + +G ++ AD Y + + K + +L+
Sbjct: 182 TALFSATMPAPIRRIAHRHLREPEEIR-IGAGNEAGADIDQGYCLVDGRH-KLEALARLL 239
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
IVF +TK +A A+ A+ + L+GD+ Q +RER ++ RDGR +++
Sbjct: 240 EVEPDRDAAIVFARTKAATLEIADALAARGHAVSALNGDMEQKERERVVAELRDGRIDVI 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DVP + + +Y+ P +E +VHR GRTGRAG+KG AIL ++ R ++
Sbjct: 300 VATDVAARGIDVPRISHVFNYDAPGDAEAYVHRIGRTGRAGRKGRAILFLEPRRRRMLRE 359
Query: 458 IE 459
IE
Sbjct: 360 IE 361
>gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. tomato str. DC3000]
gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. tomato Max13]
gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. tomato K40]
gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422590026|ref|ZP_16664684.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422649334|ref|ZP_16712433.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|422658243|ref|ZP_16720679.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. tomato str. DC3000]
gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 562
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/415 (37%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 DPTK------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG 414
>gi|386283873|ref|ZP_10061097.1| DEAD/DEAH box helicase [Sulfurovum sp. AR]
gi|385345416|gb|EIF52128.1| DEAD/DEAH box helicase [Sulfurovum sp. AR]
Length = 460
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/416 (37%), Positives = 230/416 (55%), Gaps = 16/416 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ D D+ + G + PIQ+ + G DM+G+A TGTGKT AFG+P++
Sbjct: 1 MKFNEFDFHADLAKGVKIAGFKEPSPIQEMAIPIISNGSDMVGQAHTGTGKTAAFGLPMM 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DK+ K G LV+ PTRELA QV E + + T+ VYGG Q+
Sbjct: 61 DKLAK-------GEIERALVITPTRELATQVADELYHLGRFAGIRTLTVYGGVGYGRQIA 113
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+ GV VV TPGR+ DL ++ +++ + VVLDEAD+ML +GF ++++ I E +PQN
Sbjct: 114 LIHKGVQIVVATPGRLKDLYRKGKIDVLNPEIVVLDEADEMLDMGFLDEIKEIFEYIPQN 173
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ L N L P + +VGD + Y + +I+
Sbjct: 174 RQTLLFSATMPEPIKELANNILYQPEYISVVGDEETTNNIIDQRYYVIHEHQRDEAIVKL 233
Query: 337 LITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L TE K KCI+F + KR+ DRL H A +N LHGD+ Q RE + A+R G
Sbjct: 234 LETE--KTNKCIIFCRMKREVDRLTEHLQALGFNANGLHGDLEQMDREVVIKAYRRGETK 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
I++ATDVAARGLDV +V + +Y +P +++VHR GRTGRAG+ G AI + T ++ +++
Sbjct: 292 IMVATDVAARGLDVKDVTHVFNYHIPFDPQSYVHRIGRTGRAGRSGQAITLVTTEEFKEL 351
Query: 456 KSIERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRDRQYADTGFDRSSRMGD 511
+ I+++VG R+A GG +D +R+ Q D MGD
Sbjct: 352 QRIQKEVGAEM----RLATIQGGSGLDDASCEYLAEQIRNIQVHDDAATLLEYMGD 403
>gi|398864426|ref|ZP_10619961.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398245234|gb|EJN30760.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 557
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVAEAESTHGDLLDRLTADIG 414
>gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase [Pedobacter heparinus DSM 2366]
gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
2366]
Length = 625
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 227/372 (61%), Gaps = 14/372 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDK 160
SKL IS D+V A+ G PIQ+ + ++G D +G A+TGTGKT AFG+P+L+
Sbjct: 6 SKLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLE- 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRA 217
+I F + P L+L PTREL Q+ K F ++ + + VYGG I Q+R
Sbjct: 65 LIDF-----KSNKPQALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLRE 119
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ GV VV TPGR++D+I R A++ + V++VVLDEAD+ML++GF ED+ IL P ++
Sbjct: 120 IRNGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDK 179
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
++ +FSATMPP +R + Y+ +P+ + + G + + Y I + + ++ +
Sbjct: 180 KTWLFSATMPPEVRRIAKNYMDSPVELTM-GTKNTGNVNIEHEYYIVRARDKYAAL--KR 236
Query: 338 ITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I + +VF +TK D +A H + YN + LHGD+SQ QR++ + FRD +
Sbjct: 237 IVDFNPEIFAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQL 296
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
LIATDVAARG+DV NV +I+Y LP+ E++ HR+GRTGRAGK G +I I ++ +++
Sbjct: 297 LIATDVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIR 356
Query: 457 SIERDVGCRFTQ 468
IER +G +FT+
Sbjct: 357 QIERIIGKQFTK 368
>gi|398991110|ref|ZP_10694265.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
gi|399011181|ref|ZP_10713514.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398118519|gb|EJM08250.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398141395|gb|EJM30318.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
Length = 557
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 244/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +++ +I+AA+A G + IQ+ + M G+DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS V +VLDEAD+ML +GF +D+EVI + LP RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPQHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG 414
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 228/375 (60%), Gaps = 14/375 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLC-LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI R+ L LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKI-------DPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKSPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDY 350
Query: 455 VKSIERDVGCRFTQL 469
+ IE R T L
Sbjct: 351 LHVIENLTKKRMTTL 365
>gi|393768781|ref|ZP_10357313.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
gi|392725793|gb|EIZ83126.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
Length = 575
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 220/358 (61%), Gaps = 7/358 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++Q ++ AL G PIQ + PAM+GRD+ G A+TGTGKT AF +PIL ++ +
Sbjct: 73 LAQPVLRALGEAGYVTPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLS 131
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
++ R LVL+PTRELA Q+ + F + L T V+GG IS Q RAL GVD
Sbjct: 132 DRRAPRRGCRVLVLSPTRELANQIAESFADYGRHLSYTTTVVFGGVTISRQERALAPGVD 191
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+V TPGR+IDLI+R +L L V+ +VLDEADQML +GF ++ I++ LP RQS+ FS
Sbjct: 192 ILVATPGRLIDLIERRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAQRQSLFFS 251
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP I L ++YLK+P+ V + + A+ + I K +++ ++ + A
Sbjct: 252 ATMPKNIAGLASQYLKDPVQVAVTPVA--TTAERVEQKVIFAHTGAKQALLAHILRDPAI 309
Query: 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
+ +VFT+TK ADR+ + K +HG+ SQ QRER L AFRDG +L+ATD+
Sbjct: 310 -DRVLVFTRTKHGADRVVRGLDKVGIAGAAIHGNKSQPQRERALQAFRDGDCRVLVATDI 368
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
AARG+DV V +++++LPN E++VHR GRT RAG G AI D++ ++ IER
Sbjct: 369 AARGIDVDGVSHVVNFDLPNVPESYVHRIGRTARAGATGLAISFCNDEERAYLRDIER 426
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 228/374 (60%), Gaps = 12/374 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALSGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N +G LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKI-DTNRHELQG-----LVIAPTRELAIQTQEELYRLGRDKRVRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIENIISKVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+ +
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPTHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G +
Sbjct: 233 LFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G ++ T + +
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYL 351
Query: 456 KSIERDVGCRFTQL 469
IE R L
Sbjct: 352 HVIENLTKKRMATL 365
>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
Length = 403
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 227/368 (61%), Gaps = 12/368 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L + IS++ + ++ + G K +Q+ + ++G+D+I +A+TGTGKT AFGIP
Sbjct: 9 ENLSFNDFQISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIP 68
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I++ + + + R LVL PTRELA QV KE + + + VYGG I HQ
Sbjct: 69 IVETV------NTKSRKIQALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQ 122
Query: 215 MRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
+ L G D V VGTPGR+ DLI+R LNL++V+ VLDEAD+ML +GF ED+E I E+
Sbjct: 123 IDFLKKGKDVVIVGTPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQT 182
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +Q+++FSATMP I L ++L + + + ++ D I + ++
Sbjct: 183 PPVKQTLLFSATMPKAIMRLAERFLNDDYEIVKIK-PEEVTVDRIKQKAYRVDTGKEFET 241
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ E+ +G K IVFT+TKR AD L+ + + +N + +HGD SQ++RER L FR
Sbjct: 242 LTKILNEN-EGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRN 300
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
R +IL+ATDVAARGLD+ VD++ +Y LP E+++HR GRTGRAGK G AI I + +
Sbjct: 301 RIDILVATDVAARGLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISIISTLED 360
Query: 453 RQVKSIER 460
R + +++
Sbjct: 361 RLFEIVKK 368
>gi|398965638|ref|ZP_10681111.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398146899|gb|EJM35624.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 557
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIG 414
>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 524
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 226/373 (60%), Gaps = 33/373 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L + ++I+ A+ G + IQ V+ ++G D+IG+A+TGTGKTLAFG P+L +I
Sbjct: 7 SELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSRI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
+ G+ ++L PTRELA QV E + A + + VYGG PI Q+ AL
Sbjct: 67 -----RSSEGKIS-SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALR 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G+D VVGTPGRV+DLI+R LNL ++F+VLDEAD+ML++GF +D+E I++ Q+RQ+
Sbjct: 121 RGIDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQT 180
Query: 280 MMFSATMPPWIRSLTNKY----------LKNPLTVDLVGDSDQKLADGISLYSIATSM-Y 328
M+FSATMP I+ L +Y LKN +TV V ++ + ++ +
Sbjct: 181 MLFSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDV 240
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLS 387
++P+ I+F +TKR+ D L + + Y E +HGD++Q+QR TL
Sbjct: 241 DEPT-------------SAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLR 287
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
F++G LIATDVAARG+DV NV +I+Y+LP E++VHR GRTGRA +KG A +
Sbjct: 288 KFKEGSLEFLIATDVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLV 347
Query: 448 TDQQARQVKSIER 460
T ++ +K IE+
Sbjct: 348 TAREYMSLKHIEK 360
>gi|406981744|gb|EKE03149.1| hypothetical protein ACD_20C00242G0002 [uncultured bacterium]
Length = 634
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 224/379 (59%), Gaps = 15/379 (3%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S+K L +L IS +I+AA+ G + PIQ + + G+D+IG+A+TGTGKT A
Sbjct: 17 SNKMTKLRFEELGISTEILAAVKDMGFEEASPIQSEAIPILLSGKDLIGQAQTGTGKTAA 76
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGT 209
F IP+++K+ + ++L PTREL QV +EF + + + V YGG
Sbjct: 77 FAIPVIEKL------DPNSKELQAVILCPTRELVIQVSEEFRKLLKYKENLWVTPIYGGQ 130
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
I Q+R L GV V+GTPGR +D ++R ++ + VQ VVLDEAD+ML +GF ED+E+I
Sbjct: 131 EIERQLRTLKRGVQVVIGTPGRTMDHMRRGSIKMHSVQTVVLDEADEMLDMGFREDMEII 190
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMY 328
L+ P+ RQ++MFSATM I LT +Y +P +++ +++K+ A I
Sbjct: 191 LKDTPKERQTIMFSATMAKDILELTKQYQVDPAIINV---TNKKIHAPKIEQVYFEVQEK 247
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
KP ++ +L+ H +VF TK D+L + + Y + LHGD+SQ+QR+R ++
Sbjct: 248 NKPEVLARLLDIH-NVKLALVFCNTKSQVDQLVENLKTRGYFADALHGDMSQNQRDRVMN 306
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR+G IL+ATDVA RG+DV +++ + +Y+LP E + HR GRT RAGK G+A
Sbjct: 307 GFRNGSVEILVATDVAGRGIDVNDIEAVFNYDLPRDDEDYTHRIGRTARAGKTGTAFTFI 366
Query: 448 TDQQARQVKSIERDVGCRF 466
T +Q +K IER G +
Sbjct: 367 TGKQIYSLKRIERSNGIKI 385
>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
Length = 721
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 231/384 (60%), Gaps = 14/384 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+DS + G L + + +V A+ G PIQ + + G D++G A+TGTGKT
Sbjct: 64 NDSEETPGTSFDTLGLPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKT 123
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD----TICVY 206
AF +PIL I R+P L+LAPTRELA QV F LD + +Y
Sbjct: 124 AAFALPILSLI------DADIRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIY 177
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG Q+ L G VVGTPGRVID +++ +L++SE++F+VLDEAD+ML++GF EDV
Sbjct: 178 GGQAYGIQLSGLRRGAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDV 237
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
E IL P+++Q +FSATMP IR L+ +Y+ +P + + S+ + I+ + +
Sbjct: 238 ERILADTPEDKQVALFSATMPSGIRRLSKQYMNDPHEIQV--KSETRTNTNITQRFLNVA 295
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
K + +++ E + I+F +TK + + LA + A+ +N ++GDI+Q QRERT
Sbjct: 296 HRNKLDALTRIL-EVTEFEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERT 354
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
+ +DGR +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G AIL
Sbjct: 355 VEQLKDGRLDILVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAIL 414
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
T ++ R +++IER ++
Sbjct: 415 FVTPRERRFLRNIERATNAPLQEM 438
>gi|441515068|ref|ZP_20996877.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
gi|441450162|dbj|GAC54838.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
Length = 589
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 230/384 (59%), Gaps = 14/384 (3%)
Query: 91 DDSSKD-EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
D S++D G L I + AA+ G PIQ A + P M GRD++G A+TGTGK
Sbjct: 14 DTSAQDAPGGSFDDLGIEPRVRAAITDVGYETPSPIQAATIPPLMDGRDVVGLAQTGTGK 73
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVY 206
T AF IPIL ++ R P L+LAPTRELA QV + F P + + +Y
Sbjct: 74 TAAFAIPILSRL------DTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIY 127
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG Q+ L G +VGTPGRVID + + L++S ++F+VLDEAD+ML++GFAEDV
Sbjct: 128 GGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDV 187
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
E IL P +Q +FSATMP IR L +YLK+P + + S A I+ + S
Sbjct: 188 ERILAETPDTKQVALFSATMPSSIRRLAQRYLKSPQEITV--KSKTATAQNITQRYLQVS 245
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
K + + + E + IVF +TK+ + LA + ++ + ++GD++Q+QRERT
Sbjct: 246 HQRKLDALTRFL-EVEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERT 304
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445
++ ++G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 305 INQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALL 364
Query: 446 IYTDQQARQVKSIERDVGCRFTQL 469
+ ++ +++IER T++
Sbjct: 365 FVSPRERHLLRAIERATRQELTEI 388
>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase [Clostridium cellulovorans 743B]
gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
743B]
Length = 536
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/397 (38%), Positives = 247/397 (62%), Gaps = 15/397 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L++ +I+ A+ G + PIQ + ++G D+IG+A+TGTGKT AFG IL
Sbjct: 8 NELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSIIL--- 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALD 219
N + R P L+LAPTRELA QV +E A + L+ + +YGG PI Q+RAL
Sbjct: 65 ---NNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALR 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VVGTPGRV+D ++R +LN V+F+VLDEAD+ML++GF +D+E +++ L ++RQ+
Sbjct: 122 NGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I+ L+ +Y+K+ + + + + A I+ Y ++ + ++I
Sbjct: 182 LLFSATMPDAIKRLSKRYMKSDAKL-ISIEKNTVTASTITQYYYEIKNSDRFESLCRII- 239
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + I+F +TK+ D L +M + Y E +HGD++Q+QR TL F++ + L+
Sbjct: 240 DADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLV 299
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV NV +I+Y+LP +E++VHR GRTGRA K+G A + T ++ +K I
Sbjct: 300 ATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQI 359
Query: 459 ERDVGCRFTQLPRIAVEGGGDMYNDMGGRSGYGSMRD 495
E+ +++ R +V ++Y D+ ++ +RD
Sbjct: 360 EKTTK---SKIKRNSVPTVDEIY-DVKYKNVLNKVRD 392
>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 530
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 225/389 (57%), Gaps = 19/389 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L + ++ A+ G + PIQ + PA++GRD++G A+TGTGKT F +P+
Sbjct: 2 IKFSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPM- 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
I R R P LVLAPTRELA QV + F A L + GG Q
Sbjct: 61 --ITMLKRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDN 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+D GVD ++ TPGR++D +R L LS+V+ +V+DEAD+ML +GF D+E I P
Sbjct: 119 LIDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTPFT 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYS---IATSMYEKP 331
RQ++ FSATM P I +TN +L NP +++ + + + G+ ++ + EK
Sbjct: 179 RQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEKQ 238
Query: 332 SIIGQLITEHAKGGKC---IVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLS 387
++ +I ++G C I+F K D D +A +M K+ + P+HGD+ QS R RTL+
Sbjct: 239 KLLRDIIA--SEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLA 296
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FRDG L+A+DVAARGLD+PNV + +Y++P+ +E +VHR GRTGRAGK G+ I+I
Sbjct: 297 KFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMIC 356
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEG 476
T + + + IER V +PR+ + G
Sbjct: 357 TPRDQKNLDDIERLVEM---AVPRMDLPG 382
>gi|419433872|ref|ZP_13973990.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379576873|gb|EHZ41797.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
Length = 511
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 236/380 (62%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
Length = 499
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 219/376 (58%), Gaps = 13/376 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +IV ALA RGI+ F IQ+ L A+ G D+IG+ARTG GKT FG+P+L +I
Sbjct: 21 ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIS 80
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-----------SLDTICVYGGTPI 211
P LV+ PTREL QV ++ +A L + +YGGTP
Sbjct: 81 TGEATRELDGTPRALVIVPTRELCLQVTQDLKIAATGLTASTGSGTRPLKVLAIYGGTPY 140
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q AL+ GVD VVGTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E +L
Sbjct: 141 EQQTEALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDIEKLLR 200
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+P+ RQ+M+FSATMP I +L +L P + + + + +KP
Sbjct: 201 MVPEKRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVYRAHSLDKP 260
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ +++ +G ++F +TKR A +LA +A + + +HGD+ Q RE++L AFR
Sbjct: 261 EVVARILQAEGRGA-TMIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLKAFR 319
Query: 391 DGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450
G ++L+ATDVAARG+DV +V +I+Y+ P +T+VHR GRTGRAG+ G A+ +
Sbjct: 320 SGDVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWD 379
Query: 451 QARQVKSIERDVGCRF 466
+ I++ +G F
Sbjct: 380 DLPRWGLIDKALGLDF 395
>gi|398920634|ref|ZP_10659422.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398167666|gb|EJM55714.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
Length = 557
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P+ RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + S + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG 414
>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|418103285|ref|ZP_12740357.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|419475927|ref|ZP_14015764.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419487070|ref|ZP_14026832.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|421209364|ref|ZP_15666377.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421225425|ref|ZP_15682163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|353774586|gb|EHD55073.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|379559023|gb|EHZ24054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379585439|gb|EHZ50295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|395573460|gb|EJG34050.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395588912|gb|EJG49234.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
Length = 511
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 233/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|374604838|ref|ZP_09677788.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
gi|374389546|gb|EHQ60918.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
Length = 517
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 222/364 (60%), Gaps = 12/364 (3%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ A+ G + PIQ+ + AM GRD+IG+A+TGTGKT AFGIP++ KI E+
Sbjct: 13 LLQAITELGFEEATPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLISKIDPSEERV- 71
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVG 227
+ LV+ PTRELA QV +E + + ++ +YGG I Q+RAL ++G
Sbjct: 72 -----VALVMTPTRELAIQVAEEIGKLTRFKGVRSLPIYGGQDIGRQIRALKKHPQIIIG 126
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR++D I R + L VQ VVLDEAD+ML +GF ED+ IL +P+ RQ+M+FSATMP
Sbjct: 127 TPGRLLDHINRKTIRLDHVQTVVLDEADEMLDMGFMEDITSILSLVPEERQTMLFSATMP 186
Query: 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKC 347
P I+ L N++L++P V ++ Q A I I K + +L+ +
Sbjct: 187 PNIQKLANQFLRDPEHVSVM--PKQVSAPLIEQAYIEVPERVKFDALSRLL-DMESPELA 243
Query: 348 IVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF +TKR D L+ A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARG 303
Query: 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRF 466
LDV V +I+++LP E++VHR GRTGRAGK+GSA T ++ + IER R
Sbjct: 304 LDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTPREIDHLNFIERVTRHRI 363
Query: 467 TQLP 470
+ P
Sbjct: 364 PRKP 367
>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 557
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 230/385 (59%), Gaps = 18/385 (4%)
Query: 75 IAWQHAQSAVDDYVAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAV 129
I A + V D D + + + D+S + +I ALA +GI FPIQ
Sbjct: 31 IETAQAHAPVLDEATPDITDEGDETDLSAKTFADFGVEPEISQALADKGIIHPFPIQALT 90
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRE 184
L A+ GRD+IG+A+TGTGKTL FGIP+L + ++E G +P LV+ PTRE
Sbjct: 91 LPVALDGRDVIGQAKTGTGKTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQALVVLPTRE 149
Query: 185 LAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
LAKQV E ++A ++ + VYGG Q+ AL+ G + VVGTPGR+IDL++R L+
Sbjct: 150 LAKQVATELAQAAAKRTVRIVQVYGGRAYEPQIEALEKGAEVVVGTPGRLIDLMERGVLS 209
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
L V VVLDEAD+ML +GF DVE IL R +RQ+M+FSATMP + +L +Y+ P
Sbjct: 210 LEHVTTVVLDEADEMLDLGFLPDVEKILARTRPDRQTMLFSATMPGAVVALARRYMSKPT 269
Query: 303 TVDLVGDSDQKL-ADGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRL 360
+ D+ + + T K ++ +++ A+G G+ I+FT+TKR A R+
Sbjct: 270 HIRAQDPGDESMTVTSVKQVVYRTHALNKVEVVSRIL--QARGRGRTIIFTRTKRTAARV 327
Query: 361 AHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE 419
A + ++ + LHGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV +V +I+Y+
Sbjct: 328 AEDLGSRGFATAALHGDLGQGAREQALRAFRHGKVDVLVATDVAARGIDVDDVTHVINYQ 387
Query: 420 LPNTSETFVHRTGRTGRAGKKGSAI 444
P + +VHR GRTGRAG G+A+
Sbjct: 388 CPEDEKIYVHRIGRTGRAGHSGTAV 412
>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
gi|440777955|ref|ZP_20956733.1| DeaD [Mycobacterium avium subsp. paratuberculosis S5]
gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
gi|436721715|gb|ELP45806.1| DeaD [Mycobacterium avium subsp. paratuberculosis S5]
Length = 566
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 233/388 (60%), Gaps = 15/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S++ + L I ++ A+A G IQ A + M G D++G A+TGTGKT
Sbjct: 5 DSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF IPIL KI LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKI------DAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ + Q+ L G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAE+V+
Sbjct: 119 GSSYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVD 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR LT KYL +PL V + A+ IS I +
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVST--KAKTTTAENISQRYIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E IVF +TK+ + +A + A+ ++ ++GDI Q QRERT+
Sbjct: 237 PRKMDALTRVL-EVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTV 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+A +DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 296 AALKDGGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLF 355
Query: 447 YTDQQARQVKSIERDVGCRFT--QLPRI 472
+ ++ +K+IE+ T +LP +
Sbjct: 356 VSPRERHLLKAIEKATRQPLTEAELPTV 383
>gi|374337605|ref|YP_005094310.1| cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
gi|372283710|emb|CCF01907.1| Cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
Length = 526
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 227/365 (62%), Gaps = 14/365 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++KNP V + + + D I Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMKNPEHVKVA--AKELTTDLIDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVDPPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I T +
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVTPNEMGY 350
Query: 455 VKSIE 459
+ IE
Sbjct: 351 LSIIE 355
>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
Length = 533
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 233/392 (59%), Gaps = 19/392 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L+++ ++ A+ G PIQ + PA++G+D++G A+TGTGKT +F +P+
Sbjct: 2 IKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM- 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMR 216
I R R P LVL PTRELA QV + F + +L + GG Q +
Sbjct: 61 --ITMLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+D GVD ++ TPGR+ID +R L LS+V+ +V+DEAD+ML +GF D+E I + P
Sbjct: 119 LIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFT 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYSIAT---SMYEKP 331
RQ++ FSATM P I +TN +L NP+ +++ + + + G+ ++ + EK
Sbjct: 179 RQTLFFSATMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKR 238
Query: 332 SIIGQLITEHAKGGKC---IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLS 387
++ LI A+G KC I+F K D D +A ++ K Y+ P+HGD+ QSQR +TL
Sbjct: 239 KVLRALI--DAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLE 296
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447
FR+G L+A+DVAARGLDVP+V + ++++P+ +E +VHR GRTGRAG+ G AI+I
Sbjct: 297 GFRNGDLRFLVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRIGRTGRAGRDGKAIMIC 356
Query: 448 TDQQARQVKSIERDVGCRFTQLPRIAVEGGGD 479
+ + ++ +ER V ++PR+ GGD
Sbjct: 357 VPRDEKNLEDVERLVQ---REIPRLDNPLGGD 385
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 226/378 (59%), Gaps = 11/378 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +++S ++ A+ G PIQ + ++G+D+IG+A+TGTGKT AFGIP++
Sbjct: 22 LKFTDMNLSDEVKRAVEVMGFESPSPIQAEAIPHLLEGKDVIGQAQTGTGKTAAFGIPLI 81
Query: 159 DKIIKFNEKHGRGRN---PLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPIS 212
++IIK NE RN P ++L PTRELA QV E + A I VYGG I
Sbjct: 82 ERIIKANENSEFDRNSRLPKGIILCPTRELAVQVAGELEKLAKFRKDIFVTAVYGGESIE 141
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+R L GV VVGTPGR ID IKR L L E+ ++LDEAD+ML++GF ED+E+IL++
Sbjct: 142 KQIRNLRRGVQIVVGTPGRTIDHIKRGTLKLEEITNIILDEADEMLNMGFKEDIELILQQ 201
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+ Q+++FSATMP I + KY +P V ++ S + +D I + + K
Sbjct: 202 ITTEHQTVLFSATMPKPILQIAKKYQNSPEIVKVI--SKELTSDNIEQSFLPINPNYKTD 259
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +L+ + ++F TK+ D +A + K Y E LHGD++Q QR ++ FR
Sbjct: 260 VLVRLLA-YNGWESMLIFCNTKQRTDEVAETLIQKGYAAEALHGDLAQHQRNLVMNKFRH 318
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI-LIYTDQ 450
GR IL+ATDVAARG+DV NV+ +I+Y++P E +VHR GRTGRAG KG +I I +
Sbjct: 319 GRVQILVATDVAARGIDVDNVEAVINYDVPLDPEYYVHRIGRTGRAGNKGVSITFISGRR 378
Query: 451 QARQVKSIERDVGCRFTQ 468
+ ++ IER R Q
Sbjct: 379 EVYRLNDIERYSKSRIPQ 396
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 229/377 (60%), Gaps = 15/377 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L +S+ I+ L G + PIQ+ + + D+I +A+TGTGKT AF +PI+ ++
Sbjct: 5 SELGLSEPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQRL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
R P L+LAPTRELA QV + ++ + VYGG PI Q+RAL+
Sbjct: 65 RD-------ERVPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQLRALE 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGR++D ++R L L ++ VVLDEAD+ML +GFAED+E IL++ PQ RQ+
Sbjct: 118 QGVQVVVGTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSATMP ++ L +Y ++ + + + + Y + EK + +++
Sbjct: 178 ALFSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPR--EKLDALCRILD 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
I+F +T+ +AD L ++ + Y E LHGD+SQ+QR+R + FR+G+ +L+
Sbjct: 236 VETPSS-AIIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLV 294
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+P+V +I+Y++PN E +VHR GRTGRAG+ G AI + T ++ R ++ I
Sbjct: 295 ATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQII 354
Query: 459 ERDVGCRF--TQLPRIA 473
ER R +LP +A
Sbjct: 355 ERASRSRIQRQKLPSLA 371
>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase [Segniliparus rotundus DSM 44985]
gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
44985]
Length = 548
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 227/374 (60%), Gaps = 13/374 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L++ ++ A+ G PIQ + + G+D++G A TGTGKT AF +P+L +
Sbjct: 11 FADLELHPSVLKAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVLSR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I + R P LVLAPTRELA QV + F A P + +CVYGG Q++A
Sbjct: 71 I------DPKLRRPQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G +VGTPGRV+D ++R L L +++F+VLDEAD+ML +GF EDVE +L Q++
Sbjct: 125 LARGSQVIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASASQDK 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMP IR ++ YL++P+ V + + ++ I + + K ++ ++
Sbjct: 185 QVALFSATMPGAIRKISKTYLRDPVEVTVKAAT--TTSENIEQRYTLVAHHRKLDLLTRI 242
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E + IVF +TK+ + +A + A+ + PL+GDI+Q+ RERT+SA R G+ +I
Sbjct: 243 L-EVEQFSAMIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDI 301
Query: 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456
L+ATDVAARGLDV + + +Y++P+ +E++VHR GRTGRAG+ G + L T ++ +
Sbjct: 302 LVATDVAARGLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIG 361
Query: 457 SIERDVGCRFTQLP 470
+IER T+ P
Sbjct: 362 AIERATRQALTEAP 375
>gi|409427525|ref|ZP_11262029.1| cold-shock DEAD box protein A [Pseudomonas sp. HYS]
Length = 553
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L++ IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALELHPSIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ L+ V +VLDEAD+ML +GF +D+EVI + +P++RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L+ P V + S + I + +K S + +L+
Sbjct: 183 TVLFSATLPASIRAIAERHLREPKHVKI--QSKTQTVTAIEQAHLMVHADQKVSAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPNAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG 414
>gi|375093701|ref|ZP_09739966.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374654434|gb|EHR49267.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 635
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/388 (38%), Positives = 230/388 (59%), Gaps = 10/388 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + DIV AL+ GI + F IQ L A+ G D+IG+ARTG GKTL FG+P+L +
Sbjct: 116 FTELGVHPDIVRALSAAGIERTFAIQALTLPLALAGEDLIGQARTGMGKTLGFGVPVLQR 175
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTREL QV + ++A L T +YGG P Q+ AL
Sbjct: 176 LTLPGDG-----TPQALVVVPTRELCLQVTHDLTDAAKHLGVRTTAIYGGRPYESQIEAL 230
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD V+GTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E IL +P+ RQ
Sbjct: 231 RKGVDLVIGTPGRLLDLAEQRHLVLGKVKALVLDEADEMLDLGFLPDIERILRMVPEQRQ 290
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L +L+ P + + + + + +KP ++ +++
Sbjct: 291 TMLFSATMPGPIITLARTFLRQPTHIRAEETDAGAIHERTRQFVYRSHSLDKPELVAKVL 350
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G ++FT+TKR A ++A +A + + +HGD+ Q RE+ L AFR G+ ++L
Sbjct: 351 QADGR-GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKIDVL 409
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARG+DV +V +I+Y+ P+ +T+VHR GRTGRAGK G AI + + + K
Sbjct: 410 VATDVAARGIDVDDVTHVINYQTPDDEKTYVHRIGRTGRAGKTGVAITLVDWDELPRWKL 469
Query: 458 IERDVGCRFTQLPRIAVEGGGDMYNDMG 485
I ++G + P ++ D+G
Sbjct: 470 ISDELGLDMPE-PAETYSTSKHLFTDLG 496
>gi|419495771|ref|ZP_14035488.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|421302943|ref|ZP_15753607.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
gi|379593857|gb|EHZ58668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|395901565|gb|EJH12501.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
Length = 519
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 233/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
Length = 556
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 229/381 (60%), Gaps = 12/381 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S ++ A+A G ++ IQ A + M G D+IG+++TGTGKT AF IPI+
Sbjct: 1 MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
+ + E R R P L+L+PTRELA QV E F + + T+ VYGG IS Q+
Sbjct: 61 EML----EVTDRKR-PQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQI 115
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L G D VVGTPGRV+D I+R L + + +VLDEAD+ML++GF ED+E ++E LPQ
Sbjct: 116 LELKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQ 175
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I +T++Y NP V + Q I K I+
Sbjct: 176 QRQTVLFSATMPKPILEITSQYQTNP--VHIKTPQTQINTPKIEQVYYVCPKEAKKEILM 233
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
QLI+ ++F TK+ D L + ++K Y LHGD+ Q R + F+ G+
Sbjct: 234 QLISMQ-NPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKI 292
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
NIL+ATDVAARG+DV ++D++ +Y+LP SE +VHR GRTGRAGK+G A+ + T +Q
Sbjct: 293 NILVATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYA 352
Query: 455 VKSIERDVGCRFTQLPRIAVE 475
++ +ER + TQ P ++E
Sbjct: 353 LRDLERTTRSKLTQKPLPSLE 373
>gi|418051651|ref|ZP_12689735.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353184343|gb|EHB49870.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 565
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 228/374 (60%), Gaps = 14/374 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L I ++ A+A G IQ A + + G D++G A+TGTGKT AF IPIL KI
Sbjct: 14 LQIHPAVLQAVADVGYETPSAIQAATIPALLAGSDVVGLAQTGTGKTAAFAIPILSKI-- 71
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYG 221
RN LVLAPTRELA QV + F L + + +YGG+ Q+ L G
Sbjct: 72 ----DAESRNTQALVLAPTRELALQVAEAFSRYGAHLKINVLPIYGGSSYVPQLAGLKRG 127
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VVGTPGRVID +++ +L+LS + ++VLDEAD+ML +GFAEDVE IL P+ +Q +
Sbjct: 128 AQIVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVAL 187
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMPP I+ +T KYL +P+ V + S + A+ I+ S K + +L+ E
Sbjct: 188 FSATMPPGIKKITTKYLHDPVEVTV--KSKTQTAENITQRYFQVSYPRKIDALTRLL-EV 244
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+G IVF +TK+ + +A + A+ + ++GDI Q+ RERT+++ +DG +IL+AT
Sbjct: 245 EEGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTIASLKDGTIDILVAT 304
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DVAARGLDV + ++++++P+ E++VHR GRTGRAG+ G+A L T ++ + SIER
Sbjct: 305 DVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTAFLFVTPRERHLLNSIER 364
Query: 461 DVGCRF--TQLPRI 472
+ +QLP +
Sbjct: 365 VTRQKLVESQLPSV 378
>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 527
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 225/372 (60%), Gaps = 13/372 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
++++ I+ A+ G ++ PIQ + ++G+D++G+A+TGTGKT AF IPIL KI
Sbjct: 7 EMELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQKI- 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
+ + ++L PTRELA QV E H+ + + I +YGG I+ Q+R+L
Sbjct: 66 -----DPKVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLK 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGRV+D ++R + +V + LDEAD+ML++GF ED+E IL+ +P++RQ+
Sbjct: 121 AGVQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQT 180
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I + Y K+ V +V + I Y K ++ +L+
Sbjct: 181 LLFSATMPQPIMDIARTYQKDATIVKVV--KKELTVPKIEQYYYEVRPKNKVDVLSRLLD 238
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
++ +C+VF TKR D L A++ + + E LHGD+ Q QR+R +S+FR G+ IL+
Sbjct: 239 MYSP-KRCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILV 297
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARG+DV +V+ + +Y++P E +VHR GRTGRAG+ G A + ++ +++ I
Sbjct: 298 ATDVAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDI 357
Query: 459 ERDVGCRFTQLP 470
+R + +P
Sbjct: 358 QRYCKTKIKVMP 369
>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase [Streptococcus pneumoniae CGSP14]
gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|418074418|ref|ZP_12711671.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|418079024|ref|ZP_12716246.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|418081216|ref|ZP_12718426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|418089950|ref|ZP_12727104.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|418098916|ref|ZP_12736013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|418105697|ref|ZP_12742753.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|418115112|ref|ZP_12752098.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|418117270|ref|ZP_12754239.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|418123922|ref|ZP_12760853.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|418128466|ref|ZP_12765359.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|418137658|ref|ZP_12774496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|418173983|ref|ZP_12810595.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|418178645|ref|ZP_12815228.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|418182454|ref|ZP_12819015.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|418217036|ref|ZP_12843716.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431974|ref|ZP_13972107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|419440778|ref|ZP_13980823.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|419465129|ref|ZP_14005020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|419469398|ref|ZP_14009266.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|419471486|ref|ZP_14011345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|419473652|ref|ZP_14013501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|419497961|ref|ZP_14037668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|419535050|ref|ZP_14074549.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|421281583|ref|ZP_15732380.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|421309995|ref|ZP_15760620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
CGSP14]
gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|353746551|gb|EHD27211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|353748487|gb|EHD29139.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|353751955|gb|EHD32586.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|353761141|gb|EHD41713.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|353768898|gb|EHD49420.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|353775873|gb|EHD56352.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|353785196|gb|EHD65615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|353787951|gb|EHD68349.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|353795742|gb|EHD76088.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|353798965|gb|EHD79288.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|353837939|gb|EHE18020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|353842704|gb|EHE22750.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353850691|gb|EHE30695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|353870309|gb|EHE50182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353900613|gb|EHE76164.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|379536729|gb|EHZ01915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|379544202|gb|EHZ09347.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|379546202|gb|EHZ11341.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|379550816|gb|EHZ15912.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|379563211|gb|EHZ28215.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|379577848|gb|EHZ42765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|379598794|gb|EHZ63579.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|379629055|gb|EHZ93656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|395880848|gb|EJG91899.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|395909610|gb|EJH20485.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
Length = 524
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 236/380 (62%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
Length = 528
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 217/368 (58%), Gaps = 13/368 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L IS +I +A+A G + PIQ+ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISH 213
LD I N RN +VL PTRELA Q +E + L+ + +YGG PI
Sbjct: 62 ALDTIDLNN------RNLQIMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV V+GTPGRVID I R L ++ VVLDEAD+ML +GF +D+E I++ +
Sbjct: 116 QIKALKRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+NRQ+++FSATMP I L+ KY + +V Q I I K +
Sbjct: 176 PENRQTILFSATMPKAIVELSKKYQTKAEFIKVV--HRQLTVPNIEQRYIEVKENFKIEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + ++F TK+ D + + ++ Y E LHGD+ Q QR+R +S FR+G
Sbjct: 234 LSRLI-DMRNPKLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
IL+ATDVAARG+DV +V+ + +Y+LP E +VHR GRTGRAG+ G A +
Sbjct: 293 TIEILVATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAM 352
Query: 453 RQVKSIER 460
R+++ IER
Sbjct: 353 RKLRDIER 360
>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4]
gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, [Streptococcus pneumoniae R6]
gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
TIGR4]
gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974]
gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974M2]
gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|387626806|ref|YP_006062982.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV104]
gi|387759711|ref|YP_006066689.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV200]
gi|410476960|ref|YP_006743719.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|417679565|ref|ZP_12328961.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|417694475|ref|ZP_12343662.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|417696748|ref|ZP_12345926.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|417698980|ref|ZP_12348151.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|418076815|ref|ZP_12714048.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418092190|ref|ZP_12729331.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418096685|ref|ZP_12733796.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418108014|ref|ZP_12745051.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|418110539|ref|ZP_12747560.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|418126249|ref|ZP_12763155.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|418130744|ref|ZP_12767627.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418139918|ref|ZP_12776743.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418144547|ref|ZP_12781342.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|418146842|ref|ZP_12783620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|418148961|ref|ZP_12785723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418167190|ref|ZP_12803845.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|418169585|ref|ZP_12806227.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418180949|ref|ZP_12817518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|418185328|ref|ZP_12821869.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|418187578|ref|ZP_12824101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418189826|ref|ZP_12826338.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|418192038|ref|ZP_12828540.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|418214793|ref|ZP_12841527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|418221614|ref|ZP_12848267.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|418230371|ref|ZP_12856970.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|418234799|ref|ZP_12861375.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419423639|ref|ZP_13963852.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419453945|ref|ZP_13993915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419458186|ref|ZP_13998128.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|419478235|ref|ZP_14018059.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419484830|ref|ZP_14024605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|419489360|ref|ZP_14029109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419504337|ref|ZP_14044005.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|419506481|ref|ZP_14046142.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|419508671|ref|ZP_14048323.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|419510850|ref|ZP_14050491.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419515103|ref|ZP_14054728.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|419530527|ref|ZP_14070054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421211472|ref|ZP_15668454.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421213518|ref|ZP_15670473.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|421215694|ref|ZP_15672615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|421221131|ref|ZP_15677964.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222508|ref|ZP_15679299.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421232303|ref|ZP_15688944.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421234489|ref|ZP_15691107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421238220|ref|ZP_15694790.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|421243506|ref|ZP_15700021.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421245438|ref|ZP_15701936.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421247828|ref|ZP_15704309.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|421249814|ref|ZP_15706271.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|421266588|ref|ZP_15717468.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|421271008|ref|ZP_15721862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|421273139|ref|ZP_15723980.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|421279376|ref|ZP_15730182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|421294878|ref|ZP_15745599.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|421296428|ref|ZP_15747137.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|421301457|ref|ZP_15752127.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|421314475|ref|ZP_15765062.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|444382571|ref|ZP_21180772.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444386260|ref|ZP_21184321.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444387771|ref|ZP_21185787.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444389316|ref|ZP_21187233.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444391706|ref|ZP_21189516.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444394603|ref|ZP_21192154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444398902|ref|ZP_21196377.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444403416|ref|ZP_21200513.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444404127|ref|ZP_21201089.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444407649|ref|ZP_21204316.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444417903|ref|ZP_21213901.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444420547|ref|ZP_21216319.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
gi|61223743|sp|P0A4D7.1|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|61223744|sp|P0A4D8.1|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
TIGR4]
gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|353746955|gb|EHD27613.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353763545|gb|EHD44099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353768406|gb|EHD48930.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353778291|gb|EHD58759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|353781936|gb|EHD62376.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353796189|gb|EHD76534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|353802068|gb|EHD82368.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353807013|gb|EHD87285.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|353811297|gb|EHD91539.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353812417|gb|EHD92652.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353829182|gb|EHE09316.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|353834176|gb|EHE14281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353843021|gb|EHE23066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|353848612|gb|EHE28624.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|353849563|gb|EHE29568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353853553|gb|EHE33534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353855124|gb|EHE35094.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353869523|gb|EHE49404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353874924|gb|EHE54778.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353885252|gb|EHE65041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|353886421|gb|EHE66203.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|353904697|gb|EHE80147.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379529850|gb|EHY95091.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|379565671|gb|EHZ30663.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379573435|gb|EHZ38390.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379581583|gb|EHZ46467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|379586211|gb|EHZ51065.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379586902|gb|EHZ51752.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|379605725|gb|EHZ70475.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|379608395|gb|EHZ73141.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379611116|gb|EHZ75844.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|379626015|gb|EHZ90641.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|379631453|gb|EHZ96030.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|379635652|gb|EIA00211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395572580|gb|EJG33175.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395579272|gb|EJG39776.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|395579901|gb|EJG40396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|395585395|gb|EJG45779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395588676|gb|EJG49004.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395594806|gb|EJG55041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395600343|gb|EJG60500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395603569|gb|EJG63705.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|395607005|gb|EJG67105.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395607965|gb|EJG68061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395613189|gb|EJG73219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|395613508|gb|EJG73536.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|395866656|gb|EJG77784.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|395867222|gb|EJG78346.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|395874342|gb|EJG85428.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|395878869|gb|EJG89931.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|395893447|gb|EJH04434.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|395895301|gb|EJH06276.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|395899017|gb|EJH09961.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|395913160|gb|EJH24013.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|406369905|gb|AFS43595.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae gamPNI0373]
gi|444247988|gb|ELU54509.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444251731|gb|ELU58199.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444251826|gb|ELU58293.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444257916|gb|ELU64249.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444259845|gb|ELU66154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444264468|gb|ELU70543.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444264962|gb|ELU70998.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444269638|gb|ELU75442.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444271245|gb|ELU76996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444277356|gb|ELU82867.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444282368|gb|ELU87637.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444284223|gb|ELU89379.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
Length = 524
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 233/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
Length = 631
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/387 (41%), Positives = 232/387 (59%), Gaps = 20/387 (5%)
Query: 86 DYVAYDDSSKDEGLDIS---KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
D+ +++ D D S ++ +I+ A+ +G + PIQ A + M GRD++G+
Sbjct: 45 DHNCTNNNKTDRNQDASGFADFGLNAEILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQ 104
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PS 199
A+TGTGKT AF +P+L ++ R+P LVLAPTRELA QV F A P
Sbjct: 105 AQTGTGKTAAFALPLLARM------DPDQRSPQVLVLAPTRELAVQVADSFSTYAAHLPH 158
Query: 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
+ + VYGG Q+ L G+ VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML
Sbjct: 159 IRVLPVYGGADFRDQINRLKRGIQVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLR 218
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
+GF +DVE I+E+LP+ RQ ++FSATMP IR ++ YL NP + + QK +D S
Sbjct: 219 MGFIDDVEWIIEQLPKQRQVVLFSATMPTEIRRISLNYLNNPAEITI----RQKGSDA-S 273
Query: 320 LYSIATSMYEKPSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGD 376
M P + L + E G I+F +TK +A ++ + ++ L+GD
Sbjct: 274 RIRQRYLMVHAPHKLEALNRVLEAETGEGVIIFGRTKAITVTIAESLELTGHDVAVLNGD 333
Query: 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGR 436
++QSQRERT+ R G NIL+ATDVAARGLDV V L+I+Y++P SE +VHR GRTGR
Sbjct: 334 VAQSQRERTIERLRKGSINILVATDVAARGLDVDRVSLVINYDIPFDSEAYVHRIGRTGR 393
Query: 437 AGKKGSAILIYTDQQARQVKSIERDVG 463
AG+ G AIL T ++ R + +ER VG
Sbjct: 394 AGRTGDAILFLTPRERRFLGGLERAVG 420
>gi|387892981|ref|YP_006323278.1| cold-shock DEAD box protein A [Pseudomonas fluorescens A506]
gi|387161251|gb|AFJ56450.1| cold-shock DEAD box protein A [Pseudomonas fluorescens A506]
Length = 557
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +++ +I+AA+A G + IQ+ + M G+DMIG+A+TGTGKT AF +PIL I
Sbjct: 9 AAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAFALPILHCI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS V +VLDEAD+ML +GF +D+EVI + LP RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPEHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG 414
>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 530
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 172/487 (35%), Positives = 265/487 (54%), Gaps = 49/487 (10%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+D +AA+ + G P+Q+ + ++GRD+I A TGTGKT AF +PIL + +
Sbjct: 7 LGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTLPR 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
GR R P LV++PTRELA+Q+ + + + T V+GGTP Q++ L G
Sbjct: 67 VK---GRNRAPRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQIKELRGG 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D ++ TPGR+ DL+KR +NLS V+ +VLDEAD+ML +GF DV I++ P+ RQ+++
Sbjct: 124 TDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPECRQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSAT+ I+ L +P V++ + + A + + + + KP ++ ++ E
Sbjct: 184 FSATIDQSIQKNLGSLLNDPAMVEIARNGET--AKTVEQFMMPIKNFNKPELLEAVLREK 241
Query: 342 AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ IVF +TK + A A+ + + E +H D SQ R R L FR G+ +IL+AT
Sbjct: 242 G-SERIIVFARTKNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVAT 300
Query: 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460
DV ARG+DVP+VD +I+++LP+ E +VHR GRTGRAG+KG AI T + +R ++ IER
Sbjct: 301 DVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEKGYAISFVTRETSRTLRDIER 360
Query: 461 DVG--CRFTQL------PRI-------AVEGG--------------GDMYNDMGGRSGYG 491
+G F +L P + A +GG G Y G+ GY
Sbjct: 361 LIGKDIPFMELETYELDPTLLKQKKGGARQGGSKSGGSKPYGKRSAGKSYGKPAGKGGYR 420
Query: 492 SMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNNSSYSGQGG--GSSSGGFGS 549
DR + + + GG S GS R+ + SG+GG +++G G
Sbjct: 421 KSDDR--------KDGKPAGKSYAAEGG-ESKGSKRFERAEAPRSGKGGFDRANAGKPGK 471
Query: 550 NANRSGK 556
++RSGK
Sbjct: 472 RSDRSGK 478
>gi|383820631|ref|ZP_09975884.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
gi|383334548|gb|EID12986.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
Length = 559
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 232/381 (60%), Gaps = 13/381 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L I ++ A+A G IQ A + + G D++G A+TGTGKT AF IP+L
Sbjct: 13 LTFNDLQIHPSVLRAIADVGYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPLL 72
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
KI + R+ LVLAPTRELA QV + F P ++ + +YGG Q+
Sbjct: 73 SKI------DPKRRDTQALVLAPTRELALQVAEAFGRYGAHLPEINVLPIYGGASYGPQL 126
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L G VVGTPGRVID +++ L+LS + ++VLDEAD+ML++GFAE+VE IL P+
Sbjct: 127 AGLKRGAQVVVGTPGRVIDHLEKGRLDLSHLDYLVLDEADEMLTMGFAEEVERILAETPE 186
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+Q +FSATMP I+ +T KYL +P+ V + S A+ IS I + K +
Sbjct: 187 YKQVALFSATMPAAIKKITTKYLHDPVEVTV--KSKTATAENISQRYIQVAGPRKMDALT 244
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ E +G IVF +TK+ + +A + A+ + ++GDI Q+QRERT++A +DG
Sbjct: 245 RVL-EVEQGDAMIVFVRTKQATEEVAERLRARGFAAAAINGDIPQAQRERTIAALKDGTI 303
Query: 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454
+IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G A+L T ++
Sbjct: 304 DILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGQALLFVTPRERHL 363
Query: 455 VKSIERDVGCRFTQLPRIAVE 475
+KSIE+ + + +VE
Sbjct: 364 LKSIEKATRSKLIEAELPSVE 384
>gi|419521514|ref|ZP_14061109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|379538814|gb|EHZ03994.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
Length = 524
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 232/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>gi|417749907|ref|ZP_12398289.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336458594|gb|EGO37561.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 566
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 233/388 (60%), Gaps = 15/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S++ + L I ++ A+A G IQ A + M G D++G A+TGTGKT
Sbjct: 5 DSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYG 207
AF IPIL KI LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKI------DAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ + Q+ L G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAE+V+
Sbjct: 119 GSSYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVD 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL P+ +Q +FSATMPP IR LT KYL +PL V + A+ IS I +
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVS--TKAKTTTAENISQRYIQVAG 236
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E IVF +TK+ + +A + A+ ++ ++GDI Q QRERT+
Sbjct: 237 PRKMDALTRVL-EVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTV 295
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
+A +DG +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L
Sbjct: 296 AALKDGGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLF 355
Query: 447 YTDQQARQVKSIERDVGCRFT--QLPRI 472
+ ++ +K+IE+ T +LP +
Sbjct: 356 VSPRERHLLKAIEKATRQPLTEAELPTV 383
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 225/364 (61%), Gaps = 13/364 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +++++S+ ++ A+ G + PIQ + A++G+D+ G+A+TGTGKT AFG+P+L
Sbjct: 1 MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+K+ H G L++ PTRELA Q +E + + T VYGG I HQ++
Sbjct: 61 EKV------HETG-GVQALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIK 113
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L V+GTPGR++DLIKR L L+ V+ +VLDEAD+ML +GF ED+E I+ LP
Sbjct: 114 LLKKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTE 173
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+P I+ + + ++ +P TV + + Q AD I Y YEK ++ +
Sbjct: 174 RQTLLFSATVPQEIKRIADNFMNDPATVHV--KTKQMTADLIDQYYSRCKDYEKFDLLTR 231
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
I + IVF +TKR D +A + + Y+ E +HGD+SQ +R L F++G+ +
Sbjct: 232 FI-DVQNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLD 290
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
IL+ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK+G ++ T + +
Sbjct: 291 ILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYL 350
Query: 456 KSIE 459
++IE
Sbjct: 351 RTIE 354
>gi|350569165|ref|ZP_08937561.1| ATP-dependent RNA helicase DeaD [Propionibacterium avidum ATCC
25577]
gi|348659983|gb|EGY76693.1| ATP-dependent RNA helicase DeaD [Propionibacterium avidum ATCC
25577]
Length = 541
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 212/353 (60%), Gaps = 10/353 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +DI AL GI FPIQ + ++QG D+IG+ARTGTGKTLAFGI +L +I
Sbjct: 28 ADLGVREDICQALEGVGIVSPFPIQAMSIPISIQGTDLIGQARTGTGKTLAFGITVLQRI 87
Query: 162 I-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
I + E +GR P LV+ PTRELA QV K+ +A + VYGG Q
Sbjct: 88 ILPGDDDWEEFEHKGR-PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYEPQ 146
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R P
Sbjct: 147 IDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTP 206
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+RQ+M+FSATMP I +L L P+ V G Q + +K +I
Sbjct: 207 TSRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADAQATVPDTQQFVYQAHPMDKIEVI 266
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G+++ + K I+F +TKR RLA + + + +HGD++Q RE+ L FR G
Sbjct: 267 GRIL-QSRDVEKVIIFCRTKRTCQRLADDLDDRGFKARAIHGDLTQVAREKALKKFRSGD 325
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446
IL+ATDVAARG+DV V +I++E P +T+VHR GRTGRAG KG A+ +
Sbjct: 326 ATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTL 378
>gi|453382103|dbj|GAC83310.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia paraffinivorans
NBRC 108238]
Length = 580
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 229/381 (60%), Gaps = 15/381 (3%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S+ D D L I + AA++ G PIQ A + P M GRD++G A+TGTGKT A
Sbjct: 12 STTDHTFD--DLGIEPRVRAAISDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAA 69
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGT 209
F IPIL ++ + P L+LAPTRELA QV + F P + + +YGG
Sbjct: 70 FAIPILSRL------DTSAKTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQ 123
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q+ L G +VGTPGRVID + R L++S ++F+VLDEAD+ML++GFAEDVE I
Sbjct: 124 SYGVQLAGLRRGAQVIVGTPGRVIDHLDRKTLDISNLEFLVLDEADEMLTMGFAEDVERI 183
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
L P ++Q +FSATMP IR L +YL +P + + S A I+ + S
Sbjct: 184 LAETPDSKQVALFSATMPSAIRRLAQRYLNDPQEITV--KSKTATAQNITQRYLQVSHQR 241
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
K + + + E + IVF +TK+ + LA + ++ + ++GD++Q+QRERT++
Sbjct: 242 KLDALTRFL-EVEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQ 300
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
++G +IL+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A+L +
Sbjct: 301 LKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVS 360
Query: 449 DQQARQVKSIERDVGCRFTQL 469
++ +++IER T++
Sbjct: 361 PRERHLLRAIERATRQELTEI 381
>gi|423690789|ref|ZP_17665309.1| cold-shock DEAD box protein A [Pseudomonas fluorescens SS101]
gi|387998616|gb|EIK59945.1| cold-shock DEAD box protein A [Pseudomonas fluorescens SS101]
Length = 557
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 243/415 (58%), Gaps = 23/415 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +++ +I+AA+A G + IQ+ + M G+DMIG+A+TGTGKT AF +PIL I
Sbjct: 9 AAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAFALPILHCI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P + + VYGG P+ Q++A+
Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS V +VLDEAD+ML +GF +D+EVI + LP RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P IR++ ++L++P V + + + I + +K S + L+
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPEHVKI--QTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDVP + + + ++P E++VHR GRTGRAG++G A+L+ T ++ R ++
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 458 IERDVGCRFTQLPRIAVEGGGD-----MYNDMG-----GRSGYGSMRDRQYADTG 502
IER G + ++ + D + N + S +G + DR AD G
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG 414
>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 601
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 242/396 (61%), Gaps = 18/396 (4%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
DD V +++ E S L + + ++ AL G PIQ A + + GR ++G A+
Sbjct: 10 DDSVTPEET---EQTTFSDLGLDERVLRALKDVGYETPSPIQAATIPALLAGRHVVGLAQ 66
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLD 201
TGTGKT AF +PIL ++ + + P LVLAPTRELA QV + F + A P +
Sbjct: 67 TGTGKTAAFALPILSRL------DLKQKTPQALVLAPTRELALQVCEAFEKYASRMPGVH 120
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ VYGG Q+ AL GV VVGTPGR++D +++ L+LSE++F+VLDEAD+ML +G
Sbjct: 121 VLPVYGGQAYGVQLSALRRGVHIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMG 180
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
FAEDVE IL P + +FSATMP IR ++ KYL + L + + + + A I+
Sbjct: 181 FAEDVETILADTPAEKHVALFSATMPSQIRRISKKYLTDALEITV--ERTTETAPNITQR 238
Query: 322 SIATSMYEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
+ S +K + +++ E+ +G IVF +TK + + LA + A+ ++ ++GDI+Q
Sbjct: 239 YLFCSYPQKIDALTRILEVENFEG--MIVFVRTKNETEMLAEKLRARGFSATAINGDIAQ 296
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439
+QRERT++ + G+ +IL+ATDVAARGLDV + +++Y++P +E++VHR GRTGRAG+
Sbjct: 297 NQRERTVAQLKSGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGR 356
Query: 440 KGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475
G AI T ++ +K+IE+ T++ +VE
Sbjct: 357 SGDAISFVTPREKYLLKAIEKATKTTLTEMQLPSVE 392
>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
Length = 503
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 229/370 (61%), Gaps = 14/370 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
L +SQ + A+++ G + PIQ + A++G D+IG+A+TGTGKT AFGIP+++K+ +
Sbjct: 7 LGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPLIEKVDV 66
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
+ G L++APTRELA QV +E ++ + + +YGG IS Q+RAL
Sbjct: 67 NVDAIQG-------LIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L +V V+LDEAD+ML++GF ED+E IL +P+N Q++
Sbjct: 120 HPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPENHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + K++ P V + + + I+ Y + K I+ +L+
Sbjct: 180 LFSATMPTPIRRIAEKFMNEPKVVKV--QAKEVTMPNITQYYLEVQEKRKFDILTRLLDM 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ I+F +TKR D L+ A+ + Y+ + +HGD++QS+R L F++G ++L+A
Sbjct: 238 QSP-ELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGK G+A+ T ++ Q+ +IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNIE 356
Query: 460 RDVGCRFTQL 469
R + +L
Sbjct: 357 RTTKRKMERL 366
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 228/361 (63%), Gaps = 12/361 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ISQD++ ++++ G + PIQ + A++G D+IG+A+TGTGKT AFGIP+++ +
Sbjct: 5 NELGISQDLMKSISKMGFEEATPIQSQTIPLALEGHDVIGQAQTGTGKTAAFGIPLIENV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+E N +V+APTRELA QV +E H+ + + +YGG IS Q+R+L
Sbjct: 65 DVKDE------NIQGIVIAPTRELAIQVSEELHKIGHFNRVRILPIYGGQDISRQIRSLK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGRVID I R L L V+ VVLDEAD+ML++GF ED+E IL+ +P RQ+
Sbjct: 119 KHPHIIVGTPGRVIDHINRKTLKLQNVKTVVLDEADEMLNMGFIEDIEAILKGVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I+ + +++KNP V + + + I Y + +K ++ +L+
Sbjct: 179 LLFSATMPGPIQRIAERFMKNPKVVKV--KTKEMTVPNIQQYYLEVQEKKKFDVLTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ I+F +TKR D L+ A+ + Y E +HGD+SQ++R L F++G +L+
Sbjct: 237 IQSP-ELAIIFGRTKRRVDELSEALTLRGYAAEGIHGDLSQAKRISVLRKFKEGSIEVLV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ Q+K++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREIGQLKNV 355
Query: 459 E 459
E
Sbjct: 356 E 356
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,046,515,124
Number of Sequences: 23463169
Number of extensions: 471985290
Number of successful extensions: 3190798
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 46084
Number of HSP's successfully gapped in prelim test: 29011
Number of HSP's that attempted gapping in prelim test: 2062134
Number of HSP's gapped (non-prelim): 402231
length of query: 618
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 469
effective length of database: 8,863,183,186
effective search space: 4156832914234
effective search space used: 4156832914234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)