BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007084
(618 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/488 (70%), Positives = 392/488 (80%), Gaps = 18/488 (3%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAGT--REFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIV
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV 354
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDV
Sbjct: 355 FTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDV 414
Query: 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469
PNVDLIIHYELPN +ETFVHRTGRTGRAGKKGSAILIY+ Q+R VK IER+VG RFT+L
Sbjct: 415 PNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTEL 474
Query: 470 PRIAVEGG 477
P IAVE G
Sbjct: 475 PSIAVERG 482
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/627 (55%), Positives = 424/627 (67%), Gaps = 74/627 (11%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ D+GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGAA-------VGGDDGLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNC 370
DQKL +GISLYSIA+ Y KPSI+G LI EHA GGKCIVFTQTKR+ADRLA+AM +SY C
Sbjct: 295 DQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYAC 354
Query: 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHR 430
+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDL+IHYELPNTSE FVHR
Sbjct: 355 QALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHR 414
Query: 431 TGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV-EGGGDMYNDMGGRSG 489
+GRT RAGKKGSAILIYT+ QAR V+ IE+D+GC+FT+LP+I V + DM+N
Sbjct: 415 SGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTELPKIEVADEASDMFN------- 467
Query: 490 YGSMRDRQYADTGFDRSSRMGDSGFGRSGGYRSPGSGRYGGNNSSYSGQGGGSSSGGFGS 549
+RD + G R+ G G G +G + GFGS
Sbjct: 468 --VVRDNRSRLAGSPRTGGSSFGRGGYGGFGEGRSRG-FGDFD-------------GFGS 511
Query: 550 NANRSGKFGGPGFSRSGGWGESTKSDRSSAFGDT---------------------GSRQS 588
+ NR G+ G G+G+ + S+AFG + G+R+S
Sbjct: 512 SPNRGGRSRDAGSRYGSGFGDFRRP--SNAFGRSSSKQPDGFGFGDFGEGNFSRNGNRRS 569
Query: 589 GRFGDLGDNHSSRSSGGF-TDFFGSSG 614
F D G SR GF T FG SG
Sbjct: 570 RSFDDSGSTRYSRRPNGFGTSDFGRSG 596
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 591 bits (1523), Expect = e-168, Method: Compositional matrix adjust.
Identities = 273/382 (71%), Positives = 336/382 (87%), Gaps = 1/382 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+++KL IS IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPIL
Sbjct: 98 LEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIL 157
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L
Sbjct: 158 DAIIRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQL 216
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+YGVD V+GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ
Sbjct: 217 NYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQ 276
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++MFSATMP WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI
Sbjct: 277 TLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELI 336
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILI
Sbjct: 337 KEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILI 396
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+PNVDL+IH+ELPN+SE FVHR+GRTGRAGKKG AI++++ QQ+R ++ +
Sbjct: 397 ATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMV 456
Query: 459 ERDVGCRFTQLPRIAVEGGGDM 480
E DVGC+FT+LP+I VEG M
Sbjct: 457 ENDVGCKFTELPKINVEGSDLM 478
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/374 (64%), Positives = 292/374 (78%), Gaps = 4/374 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIP
Sbjct: 100 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIP 159
Query: 157 ILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
I+ ++ + + GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYT 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+VGF E VE ILE
Sbjct: 220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI LY+IAT+ K +
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRT 339
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+AFR G
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQG 399
Query: 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452
+F +L+ATDVA+RGLD+PNVDL+IHYELPN ETFVHR+GRTGRAGK+GSAIL++T Q
Sbjct: 400 KFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQK 459
Query: 453 RQVKSIERDVGCRF 466
R V+S+ERDVGC F
Sbjct: 460 RTVRSLERDVGCHF 473
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/382 (61%), Positives = 300/382 (78%), Gaps = 2/382 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGI
Sbjct: 101 EDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGI 160
Query: 156 PILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 161 PMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNV 220
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 221 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 280
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 281 PAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTV 340
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 341 LSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 400
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+ATDVAARGLD+PNVDLIIHYELPN ETFVHR+GRTGRAGK G+AIL++T+ Q R
Sbjct: 401 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRR 460
Query: 454 QVKSIERDVGCRFTQLPRIAVE 475
V+S+ERDVGCRF + A+E
Sbjct: 461 TVRSLERDVGCRFDFISPPAIE 482
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 234/376 (62%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y +++
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEY 619
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 620 QLAQVEQKAGIKFKRI 635
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 233/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 483
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL++ P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 484 FGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 543
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 544 QLAQVEQKAGIKFKRI 559
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 499 QLRYVEQKAGITFK---RVGVPSTMDL 522
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 232/376 (61%), Gaps = 7/376 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G I Y ++
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY 547
Query: 454 QVKSIERDVGCRFTQL 469
Q+ +E+ G +F ++
Sbjct: 548 QLVQVEQKAGIKFKRI 563
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 485 GGRSGYGSMRDRQYADTGFDRSSRMGDSGF-GRSGGYRSPGSGRYGGNNSSYSGQGGG-- 541
G R GYG R ++ GF R R G+ F G+ G R P R GG N S Q G
Sbjct: 716 GPREGYGGFRGQREGSRGF-RGQRDGNRRFRGQREGSRGPRGQRSGGGNKSNRSQNKGQK 774
Query: 542 -SSSGGFG 548
S S FG
Sbjct: 775 RSFSKAFG 782
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 237/387 (61%), Gaps = 10/387 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
F +L+AT+VAARGLD+P VDL+I P E+++HR+GRTGRAG+ G + Y ++
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 454 QVKSIERDVGCRFTQLPRIAVEGGGDM 480
Q++ +E+ G F R+ V D+
Sbjct: 496 QLRYVEQKAGITFK---RVGVPSTMDL 519
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp.
japonica GN=Os09g0520700 PE=2 SV=1
Length = 696
Score = 306 bits (785), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 238/378 (62%), Gaps = 12/378 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 356
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 357 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 413
Query: 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451
G+F +L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A++++ +
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 473
Query: 452 ARQVKSIERDVGCRFTQL 469
V IER+ G +F +
Sbjct: 474 KFNVNRIERESGVKFEHI 491
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7
PE=2 SV=1
Length = 685
Score = 306 bits (784), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/380 (45%), Positives = 237/380 (62%), Gaps = 17/380 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 109 LSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVES 168
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + G GR P LVL PTRELA QV +F + A L VYGG P Q
Sbjct: 169 LVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQ 228
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++
Sbjct: 229 ISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVD 288
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISL--YSIATSMYE 329
Q+++FSAT+P W++ ++ ++LK+ TVDLV SDQK+ IS+ I S
Sbjct: 289 HVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLV--SDQKMKASISVRHIVIPCSASA 346
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
+P +I +I + GG+ I+FT+TK A +LA + PLHGDI Q+QRE TL F
Sbjct: 347 RPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGF 403
Query: 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449
R G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G A+++Y D
Sbjct: 404 RTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLY-D 462
Query: 450 QQARQVKSIERDVGCRFTQL 469
+ V IER+ G +F L
Sbjct: 463 PKRSSVTKIERESGVKFEHL 482
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 241/388 (62%), Gaps = 13/388 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+D D +SK IS + L GI LFPIQ + + + G D++GRARTG GKT
Sbjct: 88 EDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKT 147
Query: 151 LAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTIC 204
LAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL + C
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCC 207
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +GF E
Sbjct: 208 LYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVE 267
Query: 265 DVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLY 321
DVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I QSQ
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIPQSQ 384
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441
RE TL+ FR+G+F L+AT+VAARGLD+ +V LII E P E ++HR+GRTGRAG G
Sbjct: 385 REVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
Query: 442 SAILIYTDQQARQVKSIERDVGCRFTQL 469
A+ +Y D + V IE++ G +F L
Sbjct: 445 VAVTLY-DSRKSSVSRIEKEAGIKFEHL 471
>sp|P0A4D8|EXP9_STRR6 Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1
Length = 524
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 233/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>sp|P0A4D7|EXP9_STRPN Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=exp9 PE=3 SV=1
Length = 524
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 233/380 (61%), Gaps = 12/380 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQV 455
+L+ATDVAARGLD+ V + +Y++P E++VHR GRTGRAGK G +I + +
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYL 351
Query: 456 KSIERDVGCRFTQLPRIAVE 475
+ IE R L +VE
Sbjct: 352 QIIENLTKKRMKGLKPASVE 371
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 223/362 (61%), Gaps = 12/362 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
N K+ + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458
ATDVAARGLD+ V + ++++P E++VHR GRTGRAGK G A+ T ++ Q+ I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 459 ER 460
ER
Sbjct: 356 ER 357
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 221/351 (62%), Gaps = 12/351 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--ILDKIIKFNE 166
+I+ + + G S PIQ A++ RD++ A+TG+GKTL + IP IL K ++ N
Sbjct: 190 EILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNS 249
Query: 167 KHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ G P LVL+PTRELA Q++ K+F S+ + ++C+YGG P Q+R L+ G D
Sbjct: 250 RDG----PTVLVLSPTRELATQIQDEAKKFGRSS-RISSVCLYGGAPKGPQLRDLERGAD 304
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++++ RQ++MF+
Sbjct: 305 IVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFT 364
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHA 342
AT P +R + + L NP+ V+ +G++DQ +A+ I+ Y + EK + Q++
Sbjct: 365 ATWPKEVRKIASDLLSNPVQVN-IGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQE 423
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G K I+F TKR D+LA +A+ Y +HGD SQ++R+ LS FR GR IL+ATDV
Sbjct: 424 PGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDV 483
Query: 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
AARGLD+ ++ ++++Y+ P E +VHR GRTGRAG G A + DQ ++
Sbjct: 484 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSK 534
>sp|P33906|DEAD_KLEPN Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3
SV=3
Length = 643
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/363 (41%), Positives = 223/363 (61%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L+ I
Sbjct: 9 ADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
R P LVLAPTRELA QV + EF + ++ + +YGG Q+RAL
Sbjct: 69 ------DPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+ Q
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K P V + S D Y A M + +++ L
Sbjct: 183 TALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTAYGMRKNEALVRFLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+ L +DGR +IL
Sbjct: 242 AEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDIL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 265 bits (678), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 227/371 (61%), Gaps = 16/371 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ +L++ G K PIQ A + ++GRD++G A+TG+GKT AF +P+L + N K
Sbjct: 17 IIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL-NINLKA- 74
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRALDYGVDAVV 226
P LVLAPTRELA QV + F + + + I V YGG Q+RAL G VV
Sbjct: 75 ----PQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVV 130
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+ Q+ +FSATM
Sbjct: 131 GTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQTALFSATM 190
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P IR ++ +++KNP + + + + S + + Y + + E
Sbjct: 191 PEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMV----YGRKTDALIRFLEVEDFSA 246
Query: 347 CIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F +TK ++ A+ ++ YN L+GD++Q+ RE+TL + GR +ILIATDVAAR
Sbjct: 247 TIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAAR 306
Query: 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCR 465
GLDV + +I+Y++P SE++VHR GRTGRAG+ G A+L +++ R +++IER +
Sbjct: 307 GLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTINQT 366
Query: 466 F--TQLPRIAV 474
QLP+I V
Sbjct: 367 IPEVQLPKIEV 377
>sp|Q49Z29|Y802_STAS1 Probable DEAD-box ATP-dependent RNA helicase SSP0802
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1
Length = 506
Score = 265 bits (676), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 175/506 (34%), Positives = 274/506 (54%), Gaps = 47/506 (9%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + L G ++ PIQK + A++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRA 217
K+ ++ G L+LAPTRELA QV + A ++ + V+GG PI Q++A
Sbjct: 63 KVA---DQEGVQ----SLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QN 276
L G VVGTPGRVID + R L +++ ++LDEAD+M+++GF +D++ I++++P +
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P+ V + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEE---YYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TSFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGKKG AI +
Sbjct: 291 LDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL-PRIAVEGGGDMYNDMGGRSGYGSMRDR-------------QYA 499
++ IE+ + T L P E ND+ G+ RD +Y
Sbjct: 351 YIRQIEQANKRQMTALRPPHRKEVLKARENDIKGKVQNWMSRDNEPRLQRIATELLGEYN 410
Query: 500 DTGFDRS--SRMGDSG--FGRSGGYRSPGSGRYGGNNSSYSGQGGGSSSGG--FGSNANR 553
D S + +S + P S G +GG GG F + R
Sbjct: 411 DVDLIASLLQELVESNDEVDVQLTFEKPLSRGKGRQGKGGPKRGGNHKRGGGKFDNKNRR 470
Query: 554 SGKFGGPGFSRSGGWGESTKSDRSSA 579
SGK GG+ K+DR S+
Sbjct: 471 SGK---------GGFNNKKKNDRPSS 487
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 228/377 (60%), Gaps = 17/377 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++ A+ G IQ A + M G D++G A+TGTGKT AF IP+L KI
Sbjct: 16 ADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI 75
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL 218
+ P LVL PTRELA QV + F L+ + +YGG+ + Q+ L
Sbjct: 76 ------DITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR+ID ++R L+LS V F+VLDEAD+ML++GFA+DVE IL P+ +Q
Sbjct: 130 RRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+FSATMPP IR L+ KYL +P V + +A+ IS I + K + +++
Sbjct: 190 VALFSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAENISQSYIQVA--RKMDALTRVL 245
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E IVF +TK+ + +A + A+ ++ + GD+ Q+QRERT++A RDG +IL
Sbjct: 246 -EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDIL 304
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATDVAARGLDV + +++Y++P+ +E++VHR GRTGRAG+ G+A++ + ++ +K+
Sbjct: 305 VATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKA 364
Query: 458 IERDVGCRFT--QLPRI 472
IE+ T QLP +
Sbjct: 365 IEKATRQTLTEAQLPTV 381
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD
PE=3 SV=3
Length = 629
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 222/363 (61%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L +
Sbjct: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 69 ------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+ Q
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 183 TALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +IL
Sbjct: 242 AEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459
TDVAARGLD+ V + ++++P E++VHR GRTGRAGKKG A+L T +++ Q+K+IE
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query: 460 R 460
R
Sbjct: 357 R 357
>sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3
SV=2
Length = 629
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 222/363 (61%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L +
Sbjct: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 69 ------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+ Q
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 183 TALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +IL
Sbjct: 242 AEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichia coli (strain K12)
GN=deaD PE=1 SV=2
Length = 629
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 222/363 (61%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L +
Sbjct: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 69 ------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+ Q
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 183 TALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +IL
Sbjct: 242 AEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=deaD PE=3 SV=2
Length = 629
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 222/363 (61%), Gaps = 13/363 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L +
Sbjct: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRAL 218
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 69 ------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+ Q
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 183 TALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +IL
Sbjct: 242 AEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
IATDVAARGLDV + L+++Y++P SE++VHR GRTGRAG+ G A+L +++ R +++
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 458 IER 460
IER
Sbjct: 360 IER 362
>sp|Q2FWH5|Y2316_STAA8 Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02316 PE=3 SV=1
Length = 506
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q99SH6|Y2081_STAAM Probable DEAD-box ATP-dependent RNA helicase SAV2081
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2081 PE=3 SV=1
Length = 506
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q5HEB9|Y2072_STAAC Probable DEAD-box ATP-dependent RNA helicase SACOL2072
OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3
SV=1
Length = 506
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q2FF45|Y2037_STAA3 Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2037 PE=3 SV=1
Length = 506
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q7A0D2|Y2004_STAAW Probable DEAD-box ATP-dependent RNA helicase MW2004
OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3
SV=1
Length = 506
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q6G7M9|Y1985_STAAS Probable DEAD-box ATP-dependent RNA helicase SAS1985
OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985
PE=3 SV=1
Length = 506
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q7A4G0|Y1885_STAAN Probable DEAD-box ATP-dependent RNA helicase SA1885
OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1
SV=1
Length = 506
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana
GN=RH5 PE=1 SV=1
Length = 537
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/336 (44%), Positives = 212/336 (63%), Gaps = 14/336 (4%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLA 180
PIQ + GRD+IG A+TG+GKTLAFGIP + ++K N+K G G NP CLVL+
Sbjct: 139 PIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLS 198
Query: 181 PTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
PTRELA Q+ E+ L +ICVYGG+ Q+ A+ GVD V+GTPGR+ DLI+
Sbjct: 199 PTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIES 258
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
N L LS+V FVVLDEAD+ML +GF E V IL + RQ +MFSAT P + L +++
Sbjct: 259 NVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFM 318
Query: 299 -KNPLTVDLVGDSDQKLADGISLYSIATSMYEKP---SIIGQLITEH-AKGGKCIVFTQT 353
NP+ V ++G D LA + I + E+ +I L H ++ + +VF
Sbjct: 319 DPNPIKV-IIGSVD--LAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALY 375
Query: 354 KRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
K +A+RL + + + +HG+ +QS+R R+LS F++G +L+ATDVAARGLD+P+V
Sbjct: 376 KVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDV 435
Query: 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448
+++I+Y P T+E +VHR GRTGRAGKKG A +T
Sbjct: 436 EVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>sp|Q2YUH3|Y1965_STAAB Probable DEAD-box ATP-dependent RNA helicase SAB1965c
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=SAB1965c PE=3 SV=1
Length = 506
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVV---WKQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q6GEZ3|Y2168_STAAR Probable DEAD-box ATP-dependent RNA helicase SAR2168
OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168
PE=3 SV=1
Length = 506
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 230/376 (61%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + + V+GG PI Q++A
Sbjct: 63 KVVG---KQGVQ----SLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
NIL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 INILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G + + L
Sbjct: 351 YIRQIEDANGRKMSAL 366
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana
GN=RH46 PE=2 SV=2
Length = 645
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 225/383 (58%), Gaps = 12/383 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ +++ + G S PIQ AMQ RD++ A+TG+GKTL + IP + + +
Sbjct: 168 LPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIH 227
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGV 222
G P LVL+PTRELA Q++ E F +S+ + C+YGG P Q++ ++ GV
Sbjct: 228 NDSRMG--PTILVLSPTRELATQIQVEALKFGKSS-KISCACLYGGAPKGPQLKEIERGV 284
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I+ +P RQ++M+
Sbjct: 285 DIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMY 344
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIGQLITEH 341
+AT P +R + L NP V+ +G+ D+ +A+ +I + EK S + Q++
Sbjct: 345 TATWPKEVRKIAADLLVNPAQVN-IGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQ 403
Query: 342 AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
G K I+F TKR D+LA + +++ +HGD SQ++R+ L+ FR GR +L+ATD
Sbjct: 404 EPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATD 463
Query: 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ----VKS 457
VAARGLDV ++ ++++Y+ PN E +VHR GRTGRAG G A + DQ A+ +K
Sbjct: 464 VAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKI 523
Query: 458 IERDVGCRFTQLPRIAVEGGGDM 480
+E Q+ +A GGG M
Sbjct: 524 LEGANQKVPPQVREMATRGGGGM 546
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/376 (38%), Positives = 229/376 (60%), Gaps = 18/376 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + ++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
K++ G++ + L+LAPTRELA QV ++ E + ++ + V+GG PI Q++
Sbjct: 63 KVV--------GQSGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P +V + +++D I Y EK
Sbjct: 175 QRQTMLFSATMPKAIQTLVQQFMKSP---QIVKTMNNEMSDPQIDEYYTIVKELEKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 IDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCRFTQL 469
++ IE G R L
Sbjct: 351 YIRQIEDSNGRRMNAL 366
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 259 bits (662), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/371 (39%), Positives = 226/371 (60%), Gaps = 16/371 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ +L G K PIQ + + ++GRD++G A+TG+GKT AF +P+L + N K
Sbjct: 17 IIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL-NINLKA- 74
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRALDYGVDAVV 226
P LVLAPTRELA QV + F + + + I V YGG Q+RAL G VV
Sbjct: 75 ----PQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVV 130
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+ Q+ +FSATM
Sbjct: 131 GTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTALFSATM 190
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P IR ++ ++++NP + + + + S + + Y + + E
Sbjct: 191 PEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMV----YGRKTDALIRFLEAEDFSA 246
Query: 347 CIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F +TK ++ A+ ++ YN L+GD++Q+ RE+TL ++GR +ILIATDVAAR
Sbjct: 247 TIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAAR 306
Query: 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCR 465
GLDV + +I+Y++P SE++VHR GRTGRAG+ G A+L +++ R +++IER +
Sbjct: 307 GLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKQS 366
Query: 466 F--TQLPRIAV 474
QLP++ +
Sbjct: 367 IPEVQLPKVEL 377
>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana
sylvestris PE=2 SV=1
Length = 607
Score = 258 bits (660), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 143/378 (37%), Positives = 225/378 (59%), Gaps = 12/378 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+IV + + G S PIQ A+QGRD++ A+TG+GKTL + +P + + +
Sbjct: 155 EIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIHLQQRRKNP 214
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
G P LVL+PTRELA Q++ E F +S+ + C+YGG P Q+R L GVD V
Sbjct: 215 QLG--PTILVLSPTRELATQIQAEAVKFGKSS-RISCTCLYGGAPKGPQLRELSRGVDIV 271
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
V TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++ +P RQ++M++AT
Sbjct: 272 VATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQTLMYTAT 331
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHAKG 344
P +R + L N + V+ +G+ D+ +A+ I+ + EK + Q++ G
Sbjct: 332 WPKGVRKIAADLLVNSVQVN-IGNVDELVANKSITQHIEVVLPMEKQRRVEQILRSKEPG 390
Query: 345 GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K I+F TK+ D+L+ + +++ +HGD SQ +R+ LS FR GR +L+ATDVAA
Sbjct: 391 SKIIIFCSTKKMCDQLSRNLTRNFGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAA 450
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ----VKSIER 460
RGLD+ ++ ++I+Y+ P E +VHR GRTGRAG G A ++DQ ++ VK +E
Sbjct: 451 RGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLVKVLEG 510
Query: 461 DVGCRFTQLPRIAVEGGG 478
C T+L +A GGG
Sbjct: 511 ANQCVPTELRDMASRGGG 528
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12)
GN=rhlE PE=1 SV=3
Length = 454
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 229/379 (60%), Gaps = 15/379 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S DI+ A+A +G + PIQ+ + ++GRD++ A+TGTGKT F +P+L +I
Sbjct: 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 65
Query: 164 FNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDY 220
+ H +GR P+ L+L PTRELA Q+ + + + L+ ++ V+GG I+ QM L
Sbjct: 66 -RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD +V TPGR++DL +NA+ L +V+ +VLDEAD+ML +GF D+ +L +LP RQ++
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNL 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT I++L K L NPL +++ + +D ++ + K ++ +I
Sbjct: 185 LFSATFSDDIKALAEKLLHNPLEIEVARRNTA--SDQVTQHVHFVDKKRKRELLSHMI-- 240
Query: 341 HAKGG--KCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
KG + +VFT+TK A+ LA + K +HG+ SQ R R L+ F+ G +L
Sbjct: 241 -GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457
+ATD+AARGLD+ + +++YELPN E +VHR GRTGRA G A+ + + + ++
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 458 IERDVGCRFTQLPRIAVEG 476
IE+ + ++PRIA+ G
Sbjct: 360 IEKLLK---KEIPRIAIPG 375
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana
GN=RH14 PE=1 SV=2
Length = 619
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 216/371 (58%), Gaps = 12/371 (3%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
G S PIQ AMQGRD++ A+TG+GKTL + IP + + G P L
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMG--PTIL 234
Query: 178 VLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
VL+PTRELA Q+++E F S+ + C+YGG P Q+R L+ G D VV TPGR+ D
Sbjct: 235 VLSPTRELATQIQEEAVKFGRSS-RISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294
+++ ++L ++ ++VLDEAD+ML +GF + I++ +P RQ++M++AT P +R +
Sbjct: 294 ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIA 353
Query: 295 NKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT 353
L NP V+ +G+ D+ +A+ I+ + + EK + Q++ G K I+F T
Sbjct: 354 ADLLVNPAQVN-IGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCST 412
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KR D+L + + + +HGD SQ +R+ L+ FR GR +L+ATDVAARGLDV ++
Sbjct: 413 KRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIR 472
Query: 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ----VKSIERDVGCRFTQL 469
+++Y+ PN E +VHR GRTGRAG G A + DQ ++ +K +E Q+
Sbjct: 473 AVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQI 532
Query: 470 PRIAVEGGGDM 480
+A GGG M
Sbjct: 533 REMATRGGGGM 543
>sp|Q5HME0|Y1688_STAEQ Probable DEAD-box ATP-dependent RNA helicase SERP1688
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP1688 PE=3 SV=1
Length = 509
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 223/372 (59%), Gaps = 19/372 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + A++G D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSII 334
RQ+M+FSATMP I+ L +++K P ++ + +++D I Y EK
Sbjct: 175 QRQTMLFSATMPKAIQELVQQFMKAP---KIIKTMNNEMSDPQIDEYYTIVKELEKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
+IL+ATDVAARGLD+ V + ++++P +E++ HR GRTGRAGK+G A+ +
Sbjct: 291 IDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Query: 454 QVKSIERDVGCR 465
++ IE DV R
Sbjct: 351 YIRQIE-DVNNR 361
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 221/368 (60%), Gaps = 16/368 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ AL G + PIQ A + ++G+D++G A+TG+GKT AF +P+L I K +
Sbjct: 17 IITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNI-KLD---- 71
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVV 226
R P LVL PTRELA QV + F + L + +YGG Q+++L G +V
Sbjct: 72 -VRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIV 130
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++D +KR L+LS + +VLDEAD+ML +GF EDVE I+ +P Q+ +FSATM
Sbjct: 131 GTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATM 190
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P IR ++ +++KNP + + + + S + + Y K + E
Sbjct: 191 PEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMV----YGKKTDALIRFLEAEDFSA 246
Query: 347 CIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F +TK ++ + + YN L+GD++QS RE+TL +DGR +ILIATDVAAR
Sbjct: 247 TIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAAR 306
Query: 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCR 465
GLDV + +I+Y++P SE++VHR GRTGRAG+KG A+L +++ R +++IER +
Sbjct: 307 GLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNIS 366
Query: 466 FTQ--LPR 471
++ LP+
Sbjct: 367 ISEVNLPK 374
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp.
japonica GN=Os01g0549400 PE=2 SV=2
Length = 792
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/349 (39%), Positives = 210/349 (60%), Gaps = 8/349 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I+ + R G S PIQ A+Q +D++ A+TG+GKTL + +P I +
Sbjct: 160 EILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNP 219
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
G P LVLAPTRELA Q+ +E F S+ + + C+YGG P Q+R LD GVD V
Sbjct: 220 RSG--PTVLVLAPTRELATQILEEAVKFGRSS-RISSTCLYGGAPKGPQLRDLDRGVDVV 276
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
V TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++ +P RQ++M++AT
Sbjct: 277 VATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTAT 336
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSIIGQLITEHAKG 344
P +R + L +P+ V +G D+ +A+ ++ + EK + Q++ G
Sbjct: 337 WPKEVRRIAEDLLVHPVQV-TIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSG 395
Query: 345 GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K ++F TKR D+LA + + + +HGD SQS+RE+ LS FR GR IL+ATDVAA
Sbjct: 396 SKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAA 455
Query: 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453
RGLD+ ++ ++I+Y+ P E +VHR GRTGRAG G A + DQ ++
Sbjct: 456 RGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSK 504
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,328,676
Number of Sequences: 539616
Number of extensions: 11220981
Number of successful extensions: 81093
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 847
Number of HSP's that attempted gapping in prelim test: 40376
Number of HSP's gapped (non-prelim): 13318
length of query: 618
length of database: 191,569,459
effective HSP length: 124
effective length of query: 494
effective length of database: 124,657,075
effective search space: 61580595050
effective search space used: 61580595050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)