Query 007085
Match_columns 618
No_of_seqs 495 out of 2974
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 18:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 4.4E-68 9.6E-73 539.7 37.6 376 100-475 92-473 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 7.3E-63 1.6E-67 469.1 33.2 367 95-470 57-427 (476)
3 PRK10590 ATP-dependent RNA hel 100.0 6.1E-60 1.3E-64 501.1 50.8 365 100-467 2-369 (456)
4 PTZ00110 helicase; Provisional 100.0 5E-60 1.1E-64 508.6 46.0 381 93-475 124-509 (545)
5 KOG0336 ATP-dependent RNA heli 100.0 5.5E-61 1.2E-65 457.8 25.7 430 50-480 164-602 (629)
6 COG0513 SrmB Superfamily II DN 100.0 4.7E-59 1E-63 496.1 41.1 364 99-467 29-398 (513)
7 PRK04537 ATP-dependent RNA hel 100.0 4.3E-57 9.3E-62 487.3 54.9 367 99-468 9-382 (572)
8 KOG0328 Predicted ATP-dependen 100.0 1.9E-58 4.1E-63 420.6 28.0 367 97-472 25-395 (400)
9 KOG0333 U5 snRNP-like RNA heli 100.0 7.1E-58 1.5E-62 449.9 33.2 368 93-463 239-637 (673)
10 PRK04837 ATP-dependent RNA hel 100.0 1.1E-56 2.3E-61 473.5 44.7 369 97-468 6-380 (423)
11 KOG0339 ATP-dependent RNA heli 100.0 2.1E-57 4.5E-62 444.2 35.8 381 93-475 217-600 (731)
12 KOG0342 ATP-dependent RNA heli 100.0 1.4E-57 2.9E-62 446.3 32.8 361 97-459 80-446 (543)
13 PRK11634 ATP-dependent RNA hel 100.0 2.1E-56 4.6E-61 484.1 43.9 361 99-468 6-370 (629)
14 PRK11776 ATP-dependent RNA hel 100.0 2.5E-56 5.3E-61 475.9 43.7 360 99-468 4-367 (460)
15 PLN00206 DEAD-box ATP-dependen 100.0 4E-56 8.8E-61 477.3 45.1 381 92-475 114-500 (518)
16 KOG0326 ATP-dependent RNA heli 100.0 2.6E-58 5.6E-63 426.6 21.9 389 75-473 59-452 (459)
17 KOG0345 ATP-dependent RNA heli 100.0 5.1E-56 1.1E-60 432.0 34.1 357 100-458 5-372 (567)
18 KOG0340 ATP-dependent RNA heli 100.0 9.8E-56 2.1E-60 415.6 29.7 372 97-474 5-385 (442)
19 KOG0343 RNA Helicase [RNA proc 100.0 8.5E-56 1.8E-60 437.2 30.3 382 75-460 44-433 (758)
20 PRK11192 ATP-dependent RNA hel 100.0 5.2E-54 1.1E-58 455.4 44.3 363 100-467 2-369 (434)
21 KOG0335 ATP-dependent RNA heli 100.0 8.4E-56 1.8E-60 441.9 28.6 375 99-475 74-469 (482)
22 KOG0338 ATP-dependent RNA heli 100.0 1.6E-55 3.5E-60 431.5 27.3 360 98-461 180-544 (691)
23 KOG0341 DEAD-box protein abstr 100.0 8.9E-57 1.9E-61 426.2 17.3 383 91-478 162-557 (610)
24 PRK01297 ATP-dependent RNA hel 100.0 7.2E-53 1.6E-57 450.3 47.9 368 97-467 85-459 (475)
25 KOG0346 RNA helicase [RNA proc 100.0 1E-53 2.3E-58 412.1 30.4 365 99-464 19-424 (569)
26 KOG0348 ATP-dependent RNA heli 100.0 1.9E-53 4.2E-58 419.3 28.6 366 97-462 134-566 (708)
27 PTZ00424 helicase 45; Provisio 100.0 1.2E-51 2.6E-56 434.4 41.1 363 99-470 28-394 (401)
28 KOG0334 RNA helicase [RNA proc 100.0 4.5E-52 9.7E-57 443.0 30.2 389 92-483 358-753 (997)
29 KOG0347 RNA helicase [RNA proc 100.0 4.5E-51 9.8E-56 403.8 19.9 374 96-474 178-593 (731)
30 TIGR03817 DECH_helic helicase/ 100.0 2.5E-48 5.4E-53 429.4 41.2 348 105-468 20-406 (742)
31 KOG0327 Translation initiation 100.0 8.9E-49 1.9E-53 374.7 26.1 362 100-472 27-392 (397)
32 PRK10917 ATP-dependent DNA hel 100.0 4.5E-48 9.7E-53 426.1 35.0 377 39-448 187-587 (681)
33 COG1200 RecG RecG-like helicas 100.0 3E-48 6.6E-53 400.3 30.7 377 42-451 191-592 (677)
34 TIGR00643 recG ATP-dependent D 100.0 1.7E-47 3.7E-52 419.1 34.9 401 13-447 135-563 (630)
35 PLN03137 ATP-dependent DNA hel 100.0 8E-47 1.7E-51 413.2 39.6 339 103-459 441-796 (1195)
36 KOG0332 ATP-dependent RNA heli 100.0 2.3E-47 4.9E-52 361.3 27.6 371 91-471 82-465 (477)
37 KOG0337 ATP-dependent RNA heli 100.0 3.4E-48 7.3E-53 372.3 19.7 364 98-468 20-386 (529)
38 TIGR00614 recQ_fam ATP-depende 100.0 8.2E-46 1.8E-50 394.2 37.6 324 116-460 6-343 (470)
39 KOG4284 DEAD box protein [Tran 100.0 4.5E-47 9.9E-52 381.1 24.5 350 93-452 19-381 (980)
40 KOG0350 DEAD-box ATP-dependent 100.0 7.8E-46 1.7E-50 363.2 26.0 348 110-463 148-553 (620)
41 TIGR00580 mfd transcription-re 100.0 2.2E-44 4.8E-49 401.0 39.2 321 104-450 434-770 (926)
42 PRK11057 ATP-dependent DNA hel 100.0 6.7E-44 1.4E-48 389.1 40.1 331 105-458 8-351 (607)
43 PRK13767 ATP-dependent helicas 100.0 1.1E-43 2.4E-48 400.4 38.7 337 106-448 18-396 (876)
44 PRK02362 ski2-like helicase; P 100.0 1.8E-43 4E-48 395.5 36.3 333 100-450 2-397 (737)
45 TIGR01389 recQ ATP-dependent D 100.0 6.3E-43 1.4E-47 383.0 38.0 325 113-458 4-339 (591)
46 KOG0344 ATP-dependent RNA heli 100.0 4.2E-44 9.2E-49 359.8 24.9 376 95-473 128-518 (593)
47 PRK10689 transcription-repair 100.0 2.3E-42 5E-47 393.0 39.9 319 105-449 584-918 (1147)
48 PRK00254 ski2-like helicase; P 100.0 9.3E-42 2E-46 380.8 36.3 337 100-451 2-389 (720)
49 PRK01172 ski2-like helicase; P 100.0 8E-41 1.7E-45 372.0 34.6 331 100-450 2-378 (674)
50 KOG0329 ATP-dependent RNA heli 100.0 1.1E-42 2.5E-47 312.9 15.4 331 100-472 43-378 (387)
51 COG1201 Lhr Lhr-like helicases 100.0 9.3E-41 2E-45 359.1 33.1 340 106-450 8-362 (814)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.6E-40 1.2E-44 355.1 33.0 317 110-447 4-388 (844)
53 PRK09751 putative ATP-dependen 100.0 2.3E-39 4.9E-44 369.9 35.4 321 141-468 1-405 (1490)
54 COG0514 RecQ Superfamily II DN 100.0 1.4E-39 3.1E-44 337.9 29.6 324 112-458 7-345 (590)
55 COG1111 MPH1 ERCC4-like helica 100.0 4.6E-37 1E-41 304.5 35.3 320 120-450 14-481 (542)
56 PHA02653 RNA helicase NPH-II; 100.0 1.3E-37 2.9E-42 335.5 32.4 314 124-458 167-522 (675)
57 COG1197 Mfd Transcription-repa 100.0 6E-38 1.3E-42 341.6 28.8 353 69-450 536-913 (1139)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.9E-37 1.7E-41 337.4 34.6 304 124-454 5-340 (819)
59 TIGR01587 cas3_core CRISPR-ass 100.0 3.4E-37 7.4E-42 319.2 24.6 300 138-450 1-336 (358)
60 PRK11664 ATP-dependent RNA hel 100.0 3E-36 6.6E-41 333.7 31.5 304 123-453 7-342 (812)
61 PHA02558 uvsW UvsW helicase; P 100.0 8E-36 1.7E-40 319.1 33.6 305 119-446 112-449 (501)
62 COG1202 Superfamily II helicas 100.0 1.7E-36 3.7E-41 302.1 24.4 338 97-450 192-553 (830)
63 COG1204 Superfamily II helicas 100.0 1.8E-35 3.9E-40 323.3 29.1 333 103-448 13-406 (766)
64 PRK09401 reverse gyrase; Revie 100.0 7.3E-35 1.6E-39 332.6 33.2 302 109-436 68-430 (1176)
65 PRK14701 reverse gyrase; Provi 100.0 7E-35 1.5E-39 339.2 32.0 327 108-458 66-464 (1638)
66 KOG0349 Putative DEAD-box RNA 100.0 9.2E-35 2E-39 280.1 22.2 301 172-473 285-670 (725)
67 TIGR00603 rad25 DNA repair hel 100.0 7.7E-34 1.7E-38 304.7 31.5 307 120-453 254-610 (732)
68 KOG0354 DEAD-box like helicase 100.0 5.3E-34 1.2E-38 299.4 29.4 326 118-453 59-532 (746)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 2.1E-33 4.5E-38 287.5 31.9 288 125-435 1-357 (357)
70 PRK13766 Hef nuclease; Provisi 100.0 7.6E-33 1.6E-37 314.0 38.9 320 120-450 14-479 (773)
71 PRK12898 secA preprotein trans 100.0 2.2E-33 4.9E-38 297.7 31.0 314 120-452 102-588 (656)
72 COG1205 Distinct helicase fami 100.0 1.9E-33 4.2E-38 311.7 31.1 331 107-449 56-421 (851)
73 KOG0351 ATP-dependent DNA heli 100.0 2E-33 4.4E-38 308.8 28.2 332 109-460 251-602 (941)
74 PRK09694 helicase Cas3; Provis 100.0 2.3E-32 5.1E-37 301.7 34.0 403 12-439 184-664 (878)
75 KOG0352 ATP-dependent DNA heli 100.0 1.1E-33 2.5E-38 272.4 20.0 330 110-457 7-369 (641)
76 PRK09200 preprotein translocas 100.0 7.2E-32 1.6E-36 292.4 31.9 316 118-452 76-543 (790)
77 TIGR01054 rgy reverse gyrase. 100.0 7.1E-32 1.5E-36 308.7 33.2 290 108-422 65-409 (1171)
78 TIGR03714 secA2 accessory Sec 100.0 1E-31 2.3E-36 288.2 29.6 316 121-452 68-539 (762)
79 TIGR00963 secA preprotein tran 100.0 1.7E-31 3.8E-36 284.6 30.9 313 121-452 56-519 (745)
80 PRK04914 ATP-dependent helicas 100.0 2.4E-31 5.1E-36 295.5 32.4 333 120-462 151-615 (956)
81 PRK11131 ATP-dependent RNA hel 100.0 2.9E-31 6.3E-36 298.4 32.4 303 123-454 76-415 (1294)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-31 2.5E-36 284.6 27.3 332 117-456 106-497 (1230)
83 KOG0353 ATP-dependent DNA heli 100.0 7.1E-32 1.5E-36 256.3 22.4 339 101-454 73-471 (695)
84 PRK05580 primosome assembly pr 100.0 2.6E-30 5.6E-35 284.0 38.0 312 119-450 142-549 (679)
85 COG1061 SSL2 DNA or RNA helica 100.0 6.7E-31 1.5E-35 275.5 27.1 296 120-437 35-376 (442)
86 TIGR00595 priA primosomal prot 100.0 5.6E-29 1.2E-33 263.9 30.8 289 140-448 1-379 (505)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.9E-29 8.5E-34 282.4 29.1 305 124-453 70-407 (1283)
88 PLN03142 Probable chromatin-re 100.0 3.6E-28 7.8E-33 271.0 31.9 315 121-447 169-594 (1033)
89 cd00268 DEADc DEAD-box helicas 100.0 2.7E-28 5.8E-33 231.8 25.0 200 101-304 1-202 (203)
90 COG4098 comFA Superfamily II D 100.0 3.3E-27 7.1E-32 222.6 30.1 304 121-452 97-418 (441)
91 KOG0947 Cytoplasmic exosomal R 100.0 3.3E-28 7.1E-33 255.5 25.5 314 118-450 294-723 (1248)
92 PRK11448 hsdR type I restricti 100.0 3.1E-26 6.7E-31 260.6 31.0 318 120-450 412-816 (1123)
93 KOG0951 RNA helicase BRR2, DEA 100.0 1.2E-26 2.7E-31 249.4 24.8 343 106-457 296-709 (1674)
94 KOG0948 Nuclear exosomal RNA h 99.9 1.4E-26 3E-31 237.6 18.9 314 119-450 127-539 (1041)
95 KOG0385 Chromatin remodeling c 99.9 1.1E-25 2.4E-30 232.1 25.4 318 121-450 167-597 (971)
96 PRK13104 secA preprotein trans 99.9 1.8E-25 3.8E-30 242.0 27.8 316 122-452 83-589 (896)
97 COG4581 Superfamily II RNA hel 99.9 1.4E-25 3E-30 245.4 26.5 313 118-448 116-535 (1041)
98 PRK12904 preprotein translocas 99.9 5.2E-25 1.1E-29 238.3 29.5 313 121-452 81-575 (830)
99 COG1643 HrpA HrpA-like helicas 99.9 4.1E-25 8.9E-30 240.6 27.9 306 122-453 51-390 (845)
100 PRK12906 secA preprotein trans 99.9 3E-25 6.5E-30 239.2 25.8 314 120-452 79-555 (796)
101 KOG0922 DEAH-box RNA helicase 99.9 1.8E-24 3.9E-29 222.1 26.6 304 122-454 52-394 (674)
102 COG1203 CRISPR-associated heli 99.9 6E-25 1.3E-29 244.1 24.4 321 121-450 195-550 (733)
103 PRK12899 secA preprotein trans 99.9 5.2E-24 1.1E-28 230.1 29.3 145 103-258 66-228 (970)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 7.9E-25 1.7E-29 201.6 19.5 163 123-292 1-168 (169)
105 KOG0920 ATP-dependent RNA heli 99.9 2.5E-24 5.5E-29 233.2 24.7 330 108-452 160-546 (924)
106 KOG0950 DNA polymerase theta/e 99.9 3.7E-24 8E-29 227.0 23.7 351 106-473 207-631 (1008)
107 KOG0923 mRNA splicing factor A 99.9 2.5E-24 5.4E-29 218.6 20.1 310 117-451 261-607 (902)
108 KOG0384 Chromodomain-helicase 99.9 1.4E-24 3E-29 234.4 17.5 318 120-450 369-811 (1373)
109 KOG0921 Dosage compensation co 99.9 7.4E-23 1.6E-27 213.8 26.8 314 122-449 379-773 (1282)
110 KOG0387 Transcription-coupled 99.9 1E-22 2.2E-27 211.4 22.9 316 120-447 204-653 (923)
111 PRK13107 preprotein translocas 99.9 2.8E-22 6.1E-27 216.5 25.4 316 122-452 83-593 (908)
112 KOG0924 mRNA splicing factor A 99.9 2.4E-22 5.2E-27 204.6 22.3 304 119-451 354-698 (1042)
113 COG1198 PriA Primosomal protei 99.9 9.5E-22 2.1E-26 211.3 28.0 314 120-453 197-606 (730)
114 KOG0925 mRNA splicing factor A 99.9 6.1E-22 1.3E-26 194.8 19.5 326 98-450 24-387 (699)
115 TIGR00631 uvrb excinuclease AB 99.9 1.4E-20 3E-25 204.7 31.6 126 332-458 430-561 (655)
116 TIGR00348 hsdR type I site-spe 99.9 9.4E-21 2E-25 208.6 29.8 300 122-437 239-634 (667)
117 COG4096 HsdR Type I site-speci 99.9 8.4E-22 1.8E-26 207.3 19.6 295 121-437 165-525 (875)
118 KOG0392 SNF2 family DNA-depend 99.9 2.9E-21 6.4E-26 208.1 22.2 320 121-446 975-1448(1549)
119 COG0556 UvrB Helicase subunit 99.9 5.2E-20 1.1E-24 183.9 28.5 166 276-450 386-557 (663)
120 KOG0389 SNF2 family DNA-depend 99.9 1.3E-21 2.9E-26 202.9 17.7 332 121-463 399-899 (941)
121 PRK05298 excinuclease ABC subu 99.9 1.5E-19 3.3E-24 198.3 31.6 142 333-475 435-591 (652)
122 COG1110 Reverse gyrase [DNA re 99.9 6.7E-20 1.4E-24 195.9 27.2 287 108-421 69-416 (1187)
123 TIGR01407 dinG_rel DnaQ family 99.9 2.1E-19 4.6E-24 204.2 32.6 329 108-449 233-813 (850)
124 KOG1123 RNA polymerase II tran 99.9 2.2E-21 4.8E-26 191.4 12.8 293 120-438 301-635 (776)
125 COG4889 Predicted helicase [Ge 99.9 1.3E-21 2.7E-26 204.0 11.6 329 96-437 137-572 (1518)
126 KOG0926 DEAH-box RNA helicase 99.9 5.7E-21 1.2E-25 197.9 16.0 304 127-450 262-704 (1172)
127 KOG1000 Chromatin remodeling p 99.9 5.2E-20 1.1E-24 181.6 20.4 330 116-462 193-617 (689)
128 KOG0390 DNA repair protein, SN 99.8 3E-19 6.5E-24 190.8 27.3 320 121-448 238-703 (776)
129 smart00487 DEXDc DEAD-like hel 99.8 1.8E-19 3.9E-24 170.4 20.9 183 117-306 4-190 (201)
130 PRK12326 preprotein translocas 99.8 1.2E-18 2.7E-23 184.1 28.0 312 121-452 78-549 (764)
131 KOG4150 Predicted ATP-dependen 99.8 1.1E-19 2.5E-24 181.7 17.3 327 114-448 279-638 (1034)
132 KOG0949 Predicted helicase, DE 99.8 1E-18 2.2E-23 185.0 23.8 157 121-288 511-673 (1330)
133 KOG0386 Chromatin remodeling c 99.8 1.6E-19 3.4E-24 192.1 14.9 319 121-450 394-836 (1157)
134 PRK12900 secA preprotein trans 99.8 1.1E-18 2.4E-23 189.5 20.8 122 329-452 582-713 (1025)
135 PRK13103 secA preprotein trans 99.8 5.3E-18 1.1E-22 183.8 24.1 314 122-452 83-593 (913)
136 KOG0391 SNF2 family DNA-depend 99.8 5.7E-18 1.2E-22 181.2 22.8 121 330-450 1261-1385(1958)
137 PRK07246 bifunctional ATP-depe 99.8 3.1E-16 6.6E-21 175.9 28.1 105 342-449 645-782 (820)
138 KOG0388 SNF2 family DNA-depend 99.8 5.8E-17 1.3E-21 166.2 20.2 119 329-447 1028-1149(1185)
139 TIGR03117 cas_csf4 CRISPR-asso 99.7 4.1E-15 8.9E-20 159.4 31.8 105 343-449 469-616 (636)
140 PRK12903 secA preprotein trans 99.7 8.1E-16 1.8E-20 165.2 24.5 316 121-452 78-541 (925)
141 PRK08074 bifunctional ATP-depe 99.7 3.6E-15 7.8E-20 170.4 30.7 107 343-449 751-892 (928)
142 PF04851 ResIII: Type III rest 99.7 1.4E-16 3E-21 148.7 15.4 149 121-287 3-183 (184)
143 cd00046 DEXDc DEAD-like helica 99.7 3.4E-16 7.3E-21 139.1 16.9 143 137-286 1-144 (144)
144 cd00079 HELICc Helicase superf 99.7 2.7E-16 5.8E-21 137.9 13.7 118 329-446 12-131 (131)
145 CHL00122 secA preprotein trans 99.7 2.1E-15 4.6E-20 163.0 22.8 124 122-258 77-209 (870)
146 KOG4439 RNA polymerase II tran 99.7 7.3E-16 1.6E-20 158.6 17.3 118 330-447 730-853 (901)
147 KOG0953 Mitochondrial RNA heli 99.7 3.6E-16 7.9E-21 157.1 14.6 279 138-468 193-491 (700)
148 KOG1002 Nucleotide excision re 99.7 2.3E-15 4.9E-20 149.0 19.1 107 344-450 638-749 (791)
149 TIGR02562 cas3_yersinia CRISPR 99.7 3.6E-14 7.8E-19 155.5 28.2 307 121-439 408-881 (1110)
150 PRK14873 primosome assembly pr 99.7 1.8E-14 4E-19 156.6 24.1 283 142-450 166-539 (665)
151 PF00271 Helicase_C: Helicase 99.6 6.3E-16 1.4E-20 122.0 9.1 76 363-438 2-78 (78)
152 PRK12902 secA preprotein trans 99.6 3.4E-14 7.4E-19 153.5 23.5 124 122-258 86-218 (939)
153 PRK11747 dinG ATP-dependent DN 99.6 6.2E-13 1.3E-17 147.5 29.2 104 343-449 533-673 (697)
154 COG1199 DinG Rad3-related DNA 99.6 6.4E-13 1.4E-17 148.6 27.6 94 344-440 479-607 (654)
155 COG0553 HepA Superfamily II DN 99.6 1.9E-13 4.2E-18 159.0 21.9 322 120-450 337-820 (866)
156 KOG0951 RNA helicase BRR2, DEA 99.5 3.2E-13 6.9E-18 147.2 20.5 309 122-457 1144-1501(1674)
157 PF02399 Herpes_ori_bp: Origin 99.5 1.8E-12 3.9E-17 138.9 22.5 290 138-450 51-388 (824)
158 PF06862 DUF1253: Protein of u 99.5 1.8E-11 3.8E-16 125.2 27.3 286 172-458 36-423 (442)
159 KOG1015 Transcription regulato 99.5 3.3E-12 7.2E-17 135.5 21.3 119 330-448 1127-1273(1567)
160 smart00490 HELICc helicase sup 99.5 1.9E-13 4E-18 108.9 8.6 80 359-438 2-82 (82)
161 PRK12901 secA preprotein trans 99.5 2.1E-12 4.6E-17 141.2 19.0 119 332-452 616-743 (1112)
162 TIGR00604 rad3 DNA repair heli 99.5 2.4E-11 5.1E-16 136.1 28.0 73 118-196 7-83 (705)
163 PF00176 SNF2_N: SNF2 family N 99.4 6.6E-12 1.4E-16 126.9 14.3 154 125-288 1-174 (299)
164 PF07652 Flavi_DEAD: Flaviviru 99.3 3.2E-11 6.8E-16 102.8 11.3 135 136-290 4-140 (148)
165 COG0610 Type I site-specific r 99.3 9.4E-10 2E-14 125.5 26.8 284 137-437 274-636 (962)
166 KOG2340 Uncharacterized conser 99.3 3.4E-10 7.4E-15 113.9 19.6 340 118-458 213-676 (698)
167 KOG1016 Predicted DNA helicase 99.2 1.7E-09 3.7E-14 113.0 21.1 109 344-452 719-849 (1387)
168 smart00489 DEXDc3 DEAD-like he 99.1 8.6E-10 1.9E-14 109.5 14.9 74 120-196 7-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.1 8.6E-10 1.9E-14 109.5 14.9 74 120-196 7-84 (289)
170 COG0653 SecA Preprotein transl 99.1 2.5E-09 5.5E-14 115.9 16.8 317 122-451 79-546 (822)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 4.8E-08 1E-12 94.3 12.4 127 119-258 75-210 (266)
172 PRK15483 type III restriction- 98.7 1.9E-07 4.1E-12 103.9 12.6 141 137-288 60-240 (986)
173 KOG1001 Helicase-like transcri 98.6 8.9E-08 1.9E-12 104.1 9.1 101 346-446 541-644 (674)
174 PF02562 PhoH: PhoH-like prote 98.6 2E-07 4.3E-12 86.3 8.2 149 119-285 2-155 (205)
175 KOG0921 Dosage compensation co 98.5 4.8E-07 1E-11 96.9 11.5 46 119-164 404-449 (1282)
176 COG3587 Restriction endonuclea 98.5 3.6E-06 7.8E-11 90.4 17.9 46 392-437 482-527 (985)
177 PF13604 AAA_30: AAA domain; P 98.5 4.4E-07 9.5E-12 84.9 10.1 121 121-283 1-128 (196)
178 PF13872 AAA_34: P-loop contai 98.5 1.2E-06 2.7E-11 84.7 12.9 171 103-292 25-226 (303)
179 PF13086 AAA_11: AAA domain; P 98.4 1.4E-06 3E-11 84.5 11.0 74 121-195 1-75 (236)
180 TIGR00596 rad1 DNA repair prot 98.4 8.9E-06 1.9E-10 90.8 17.7 67 221-287 7-73 (814)
181 KOG1802 RNA helicase nonsense 98.4 3.5E-06 7.6E-11 87.8 13.0 82 113-204 402-483 (935)
182 KOG0952 DNA/RNA helicase MER3/ 98.4 1.5E-07 3.3E-12 102.5 2.2 244 136-395 943-1207(1230)
183 PRK10536 hypothetical protein; 98.3 2.1E-05 4.6E-10 75.0 14.6 143 117-282 55-209 (262)
184 TIGR00376 DNA helicase, putati 98.2 0.00023 4.9E-09 78.7 22.9 68 120-196 156-224 (637)
185 PF12340 DUF3638: Protein of u 98.2 1.7E-05 3.7E-10 74.1 11.2 126 100-236 4-145 (229)
186 KOG1803 DNA helicase [Replicat 98.2 9.3E-06 2E-10 84.4 10.1 66 120-194 184-250 (649)
187 PRK10875 recD exonuclease V su 98.2 3.4E-05 7.4E-10 84.1 15.0 142 122-284 153-300 (615)
188 PF09848 DUF2075: Uncharacteri 98.1 9.9E-06 2.1E-10 83.5 9.9 108 138-272 3-117 (352)
189 TIGR01447 recD exodeoxyribonuc 98.1 5E-05 1.1E-09 82.6 14.5 140 124-283 148-293 (586)
190 PF13307 Helicase_C_2: Helicas 98.1 1.5E-05 3.2E-10 72.6 8.9 104 344-449 9-149 (167)
191 TIGR01448 recD_rel helicase, p 98.1 4.4E-05 9.5E-10 85.5 14.0 130 114-283 316-450 (720)
192 KOG1132 Helicase of the DEAD s 98.0 4.4E-05 9.5E-10 82.7 11.0 140 119-258 19-260 (945)
193 PRK13889 conjugal transfer rel 97.8 0.00031 6.8E-09 80.2 15.3 122 120-283 345-468 (988)
194 KOG3973 Uncharacterized conser 97.8 0.00037 7.9E-09 67.0 12.7 29 108-136 6-34 (465)
195 COG3421 Uncharacterized protei 97.8 0.00035 7.6E-09 72.6 13.5 140 141-288 2-167 (812)
196 COG1875 NYN ribonuclease and A 97.8 0.0001 2.2E-09 72.5 9.1 146 117-283 224-385 (436)
197 PF13245 AAA_19: Part of AAA d 97.8 0.00014 3E-09 56.2 7.8 60 129-193 2-62 (76)
198 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00053 1.1E-08 77.3 15.4 122 120-283 351-474 (744)
199 PRK04296 thymidine kinase; Pro 97.7 7.4E-05 1.6E-09 69.6 7.1 108 138-285 4-114 (190)
200 KOG0383 Predicted helicase [Ge 97.7 1.3E-06 2.8E-11 94.0 -5.9 75 332-406 618-696 (696)
201 PRK13826 Dtr system oriT relax 97.6 0.0014 3E-08 75.6 16.2 136 106-284 367-504 (1102)
202 PRK08181 transposase; Validate 97.6 0.001 2.2E-08 65.0 13.2 110 132-289 102-212 (269)
203 KOG0298 DEAD box-containing he 97.6 0.00018 3.9E-09 80.9 8.3 154 136-293 374-557 (1394)
204 KOG1805 DNA replication helica 97.6 0.00037 8.1E-09 76.4 10.5 124 120-258 668-809 (1100)
205 PRK06526 transposase; Provisio 97.5 0.00057 1.2E-08 66.5 10.1 113 129-289 91-204 (254)
206 TIGR02760 TraI_TIGR conjugativ 97.5 0.012 2.7E-07 72.9 22.6 238 120-394 428-687 (1960)
207 PF13401 AAA_22: AAA domain; P 97.3 0.00061 1.3E-08 59.2 7.0 18 136-153 4-21 (131)
208 KOG3973 Uncharacterized conser 97.3 0.0045 9.7E-08 59.8 12.9 13 379-391 239-251 (465)
209 cd00009 AAA The AAA+ (ATPases 97.3 0.0029 6.3E-08 55.7 10.9 18 136-153 19-36 (151)
210 PHA02533 17 large terminase pr 97.2 0.0022 4.7E-08 69.1 10.6 146 120-285 58-209 (534)
211 PF13871 Helicase_C_4: Helicas 97.1 0.0011 2.3E-08 64.4 6.8 58 384-441 52-117 (278)
212 PRK12723 flagellar biosynthesi 97.1 0.01 2.2E-07 61.2 14.2 130 137-297 175-309 (388)
213 PF05970 PIF1: PIF1-like helic 97.1 0.0013 2.9E-08 67.9 7.3 59 122-189 2-66 (364)
214 PRK08116 hypothetical protein; 97.0 0.016 3.4E-07 57.1 13.9 108 138-291 116-226 (268)
215 PF00580 UvrD-helicase: UvrD/R 97.0 0.0015 3.4E-08 66.2 7.1 123 122-255 1-125 (315)
216 PRK06921 hypothetical protein; 97.0 0.012 2.6E-07 57.8 12.9 27 136-163 117-143 (266)
217 PRK12377 putative replication 97.0 0.012 2.7E-07 56.8 12.7 103 137-286 102-206 (248)
218 PF14617 CMS1: U3-containing 9 97.0 0.0032 7E-08 60.3 8.5 85 172-256 125-212 (252)
219 PRK14974 cell division protein 97.0 0.014 3.1E-07 59.0 13.4 55 244-298 221-276 (336)
220 PRK07952 DNA replication prote 96.9 0.018 3.9E-07 55.5 13.0 48 243-290 160-209 (244)
221 KOG1131 RNA polymerase II tran 96.8 0.0052 1.1E-07 63.1 8.9 73 118-195 13-89 (755)
222 PRK05703 flhF flagellar biosyn 96.8 0.02 4.3E-07 60.2 13.5 67 227-297 285-354 (424)
223 PRK06893 DNA replication initi 96.8 0.0056 1.2E-07 58.9 8.7 46 243-288 89-136 (229)
224 PRK11634 ATP-dependent RNA hel 96.8 1.3 2.7E-05 49.4 30.0 71 173-251 245-319 (629)
225 PRK14712 conjugal transfer nic 96.8 0.013 2.9E-07 69.9 13.2 65 120-189 834-900 (1623)
226 PRK05642 DNA replication initi 96.8 0.0076 1.6E-07 58.1 9.3 46 243-288 95-141 (234)
227 KOG0989 Replication factor C, 96.7 0.0037 7.9E-08 60.4 6.8 46 241-287 125-170 (346)
228 smart00382 AAA ATPases associa 96.7 0.0031 6.7E-08 55.1 5.9 18 136-153 2-19 (148)
229 PRK13709 conjugal transfer nic 96.7 0.017 3.7E-07 70.0 13.7 126 120-284 966-1098(1747)
230 PRK08727 hypothetical protein; 96.7 0.0078 1.7E-07 58.0 8.9 48 243-290 91-140 (233)
231 PRK11889 flhF flagellar biosyn 96.7 0.037 8E-07 56.5 13.5 127 137-297 242-374 (436)
232 cd01124 KaiC KaiC is a circadi 96.7 0.019 4.1E-07 53.3 11.0 48 139-196 2-49 (187)
233 COG1484 DnaC DNA replication p 96.6 0.013 2.8E-07 57.1 9.8 52 133-194 102-153 (254)
234 PRK14722 flhF flagellar biosyn 96.6 0.01 2.2E-07 60.7 9.2 129 136-297 137-269 (374)
235 PRK11054 helD DNA helicase IV; 96.6 0.019 4.2E-07 64.0 12.0 79 112-197 187-265 (684)
236 smart00492 HELICc3 helicase su 96.6 0.016 3.5E-07 50.8 9.2 50 373-422 27-79 (141)
237 PRK06835 DNA replication prote 96.6 0.058 1.3E-06 54.6 14.4 109 136-290 183-293 (329)
238 PF05127 Helicase_RecD: Helica 96.5 0.00083 1.8E-08 60.8 0.9 124 140-287 1-124 (177)
239 PRK08084 DNA replication initi 96.5 0.015 3.2E-07 56.2 9.6 44 245-288 97-142 (235)
240 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.021 4.6E-07 50.8 9.7 52 243-294 93-146 (159)
241 cd01120 RecA-like_NTPases RecA 96.5 0.043 9.3E-07 49.3 12.1 37 139-184 2-38 (165)
242 PRK07764 DNA polymerase III su 96.5 0.011 2.4E-07 66.9 9.6 40 243-283 118-157 (824)
243 COG1435 Tdk Thymidine kinase [ 96.5 0.02 4.4E-07 51.9 9.3 88 139-257 7-94 (201)
244 PF00448 SRP54: SRP54-type pro 96.5 0.016 3.5E-07 54.1 9.1 54 244-297 82-136 (196)
245 PRK09183 transposase/IS protei 96.4 0.017 3.7E-07 56.6 9.5 24 132-155 98-121 (259)
246 smart00491 HELICc2 helicase su 96.4 0.016 3.5E-07 50.9 8.3 43 380-422 31-80 (142)
247 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.024 5.1E-07 54.5 10.3 43 245-287 90-133 (226)
248 COG2256 MGS1 ATPase related to 96.4 0.025 5.4E-07 57.0 10.4 37 247-288 106-142 (436)
249 TIGR01547 phage_term_2 phage t 96.4 0.007 1.5E-07 63.6 7.0 143 138-298 3-152 (396)
250 PRK12727 flagellar biosynthesi 96.4 0.1 2.2E-06 55.5 15.2 64 229-297 416-481 (559)
251 COG1444 Predicted P-loop ATPas 96.4 0.038 8.2E-07 60.9 12.4 146 114-287 207-357 (758)
252 PTZ00293 thymidine kinase; Pro 96.4 0.026 5.5E-07 52.7 9.5 35 139-182 7-41 (211)
253 PRK14086 dnaA chromosomal repl 96.3 0.013 2.7E-07 63.5 8.5 107 138-290 316-424 (617)
254 PRK14087 dnaA chromosomal repl 96.3 0.03 6.6E-07 59.4 11.2 107 138-288 143-251 (450)
255 PF01695 IstB_IS21: IstB-like 96.3 0.0059 1.3E-07 56.0 5.1 50 130-189 41-90 (178)
256 PF00308 Bac_DnaA: Bacterial d 96.3 0.012 2.7E-07 56.0 7.5 106 138-289 36-143 (219)
257 PRK10919 ATP-dependent DNA hel 96.3 0.015 3.2E-07 65.2 9.2 71 121-198 2-72 (672)
258 PRK00149 dnaA chromosomal repl 96.3 0.027 5.8E-07 60.2 10.7 108 137-290 149-258 (450)
259 cd01122 GP4d_helicase GP4d_hel 96.3 0.019 4E-07 56.9 9.0 120 131-260 25-155 (271)
260 PF13173 AAA_14: AAA domain 96.3 0.046 9.9E-07 47.2 10.2 38 245-285 61-98 (128)
261 PHA03333 putative ATPase subun 96.2 0.02 4.3E-07 62.0 9.3 148 120-286 168-332 (752)
262 COG1419 FlhF Flagellar GTP-bin 96.2 0.11 2.5E-06 52.9 14.2 131 136-298 203-336 (407)
263 PRK11331 5-methylcytosine-spec 96.2 0.034 7.3E-07 57.9 10.4 35 120-154 178-212 (459)
264 TIGR00362 DnaA chromosomal rep 96.2 0.063 1.4E-06 56.6 12.9 104 138-288 138-243 (405)
265 TIGR01075 uvrD DNA helicase II 96.1 0.026 5.6E-07 64.1 10.1 109 120-256 3-114 (715)
266 PRK05707 DNA polymerase III su 96.1 0.03 6.5E-07 56.7 9.5 39 122-161 4-46 (328)
267 PRK08903 DnaA regulatory inact 96.1 0.033 7.2E-07 53.5 9.5 43 245-288 90-133 (227)
268 TIGR02785 addA_Gpos recombinat 96.1 0.036 7.9E-07 66.5 11.6 124 121-256 1-126 (1232)
269 PRK11773 uvrD DNA-dependent he 96.1 0.025 5.4E-07 64.2 9.8 70 121-197 9-78 (721)
270 KOG2028 ATPase related to the 96.1 0.023 5.1E-07 56.1 7.9 17 137-153 163-179 (554)
271 PRK12422 chromosomal replicati 96.1 0.034 7.4E-07 58.8 9.9 108 137-292 142-251 (445)
272 TIGR02760 TraI_TIGR conjugativ 96.0 0.043 9.3E-07 68.4 11.9 65 120-189 1018-1084(1960)
273 PF03354 Terminase_1: Phage Te 96.0 0.02 4.3E-07 61.6 7.9 70 124-198 1-79 (477)
274 PRK00771 signal recognition pa 96.0 0.13 2.9E-06 54.0 13.7 52 246-297 176-228 (437)
275 PRK05986 cob(I)alamin adenolsy 96.0 0.066 1.4E-06 49.1 10.0 144 134-294 20-166 (191)
276 PF05621 TniB: Bacterial TniB 95.9 0.071 1.5E-06 52.3 10.4 114 137-279 62-181 (302)
277 PRK14088 dnaA chromosomal repl 95.8 0.099 2.1E-06 55.5 12.4 111 138-293 132-244 (440)
278 TIGR00580 mfd transcription-re 95.8 0.14 2.9E-06 59.2 13.8 79 173-257 660-742 (926)
279 PLN03025 replication factor C 95.8 0.096 2.1E-06 53.2 11.5 41 244-286 98-138 (319)
280 PRK12402 replication factor C 95.8 0.057 1.2E-06 55.3 10.0 40 244-284 124-163 (337)
281 PRK08533 flagellar accessory p 95.8 0.079 1.7E-06 50.9 10.3 53 134-196 22-74 (230)
282 TIGR01074 rep ATP-dependent DN 95.7 0.045 9.8E-07 61.8 9.9 70 122-198 2-71 (664)
283 PRK08769 DNA polymerase III su 95.7 0.033 7.1E-07 56.0 7.8 43 244-287 112-154 (319)
284 PRK13341 recombination factor 95.7 0.1 2.2E-06 58.6 12.2 42 245-291 109-150 (725)
285 PRK06731 flhF flagellar biosyn 95.7 0.22 4.8E-06 48.8 13.2 128 136-297 75-208 (270)
286 PHA03368 DNA packaging termina 95.7 0.034 7.4E-07 60.0 7.9 130 137-287 255-391 (738)
287 COG4626 Phage terminase-like p 95.7 0.074 1.6E-06 56.1 10.2 146 120-284 60-223 (546)
288 TIGR00708 cobA cob(I)alamin ad 95.7 0.096 2.1E-06 47.3 9.7 52 243-294 95-148 (173)
289 PRK07003 DNA polymerase III su 95.7 0.072 1.6E-06 58.8 10.4 40 244-284 118-157 (830)
290 PRK10689 transcription-repair 95.6 0.059 1.3E-06 63.6 10.5 79 173-257 809-891 (1147)
291 PF00004 AAA: ATPase family as 95.6 0.11 2.3E-06 44.8 9.8 15 139-153 1-15 (132)
292 PTZ00112 origin recognition co 95.6 0.2 4.3E-06 56.1 13.3 40 244-284 868-908 (1164)
293 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.098 2.1E-06 50.6 10.1 51 136-196 21-71 (237)
294 TIGR01073 pcrA ATP-dependent D 95.5 0.056 1.2E-06 61.5 9.8 71 120-197 3-73 (726)
295 PHA02544 44 clamp loader, smal 95.5 0.07 1.5E-06 54.2 9.6 41 244-284 99-139 (316)
296 PRK13342 recombination factor 95.5 0.089 1.9E-06 55.5 10.5 38 245-287 92-129 (413)
297 PRK08939 primosomal protein Dn 95.5 0.18 3.9E-06 50.6 12.1 49 243-291 215-266 (306)
298 PHA00729 NTP-binding motif con 95.5 0.18 3.9E-06 47.7 11.2 75 222-296 59-138 (226)
299 PRK12726 flagellar biosynthesi 95.5 0.33 7E-06 49.6 13.6 118 137-288 207-329 (407)
300 PRK05973 replicative DNA helic 95.5 0.11 2.5E-06 49.6 10.0 83 104-196 23-114 (237)
301 PF02572 CobA_CobO_BtuR: ATP:c 95.5 0.25 5.5E-06 44.6 11.6 139 139-294 6-147 (172)
302 KOG0733 Nuclear AAA ATPase (VC 95.4 0.13 2.9E-06 54.5 11.0 57 94-153 503-562 (802)
303 PRK12323 DNA polymerase III su 95.4 0.1 2.2E-06 56.9 10.4 43 243-286 122-164 (700)
304 PRK11823 DNA repair protein Ra 95.4 0.14 3E-06 54.4 11.5 91 136-259 80-170 (446)
305 COG2805 PilT Tfp pilus assembl 95.4 0.062 1.3E-06 52.1 7.8 24 139-163 128-151 (353)
306 PF13177 DNA_pol3_delta2: DNA 95.4 0.24 5.2E-06 44.7 11.4 49 244-293 101-149 (162)
307 PHA03372 DNA packaging termina 95.4 0.13 2.8E-06 55.0 10.8 130 137-286 203-337 (668)
308 KOG0344 ATP-dependent RNA heli 95.4 0.25 5.5E-06 52.1 12.7 103 140-256 361-467 (593)
309 COG3973 Superfamily I DNA and 95.3 0.14 3.1E-06 54.2 10.8 91 104-197 187-284 (747)
310 KOG0991 Replication factor C, 95.3 0.071 1.5E-06 49.6 7.6 41 244-285 112-152 (333)
311 COG0593 DnaA ATPase involved i 95.3 0.092 2E-06 54.1 9.4 47 245-291 175-223 (408)
312 PRK00411 cdc6 cell division co 95.3 0.14 3E-06 53.8 11.1 24 137-161 56-79 (394)
313 PRK10917 ATP-dependent DNA hel 95.3 0.091 2E-06 59.2 10.1 95 327-421 292-393 (681)
314 cd00984 DnaB_C DnaB helicase C 95.3 0.11 2.4E-06 50.4 9.6 39 134-180 11-49 (242)
315 TIGR03600 phage_DnaB phage rep 95.2 0.2 4.4E-06 53.0 12.2 117 133-259 191-319 (421)
316 TIGR02881 spore_V_K stage V sp 95.2 0.19 4E-06 49.5 11.1 18 137-154 43-60 (261)
317 PRK04195 replication factor C 95.2 0.15 3.3E-06 54.9 11.4 18 136-153 39-56 (482)
318 PF05496 RuvB_N: Holliday junc 95.2 0.045 9.8E-07 51.3 6.2 16 138-153 52-67 (233)
319 TIGR02640 gas_vesic_GvpN gas v 95.2 0.22 4.7E-06 49.0 11.5 28 127-154 12-39 (262)
320 PRK14958 DNA polymerase III su 95.2 0.058 1.3E-06 58.1 7.8 39 244-283 118-156 (509)
321 PRK14964 DNA polymerase III su 95.2 0.23 5E-06 52.9 12.1 19 137-155 36-54 (491)
322 cd01121 Sms Sms (bacterial rad 95.1 0.22 4.8E-06 51.3 11.6 90 136-258 82-171 (372)
323 KOG0738 AAA+-type ATPase [Post 95.1 0.095 2.1E-06 52.5 8.4 57 97-153 181-262 (491)
324 PF05876 Terminase_GpA: Phage 95.1 0.032 6.8E-07 60.9 5.7 68 121-196 16-86 (557)
325 PRK14956 DNA polymerase III su 95.1 0.026 5.6E-07 59.4 4.7 17 138-154 42-58 (484)
326 COG1197 Mfd Transcription-repa 95.1 0.33 7.1E-06 55.9 13.4 141 125-275 731-899 (1139)
327 PRK06964 DNA polymerase III su 95.1 0.16 3.5E-06 51.6 10.2 39 122-161 2-45 (342)
328 PRK06871 DNA polymerase III su 95.0 0.15 3.3E-06 51.3 9.8 43 243-286 105-147 (325)
329 PRK06904 replicative DNA helic 95.0 0.32 7E-06 52.0 12.8 116 135-259 220-348 (472)
330 PRK14873 primosome assembly pr 95.0 0.17 3.7E-06 56.3 10.8 92 328-420 171-266 (665)
331 COG4098 comFA Superfamily II D 94.9 0.16 3.4E-06 50.0 9.1 81 173-259 305-387 (441)
332 PRK05580 primosome assembly pr 94.9 0.18 3.8E-06 56.7 10.9 91 329-420 174-267 (679)
333 PRK07414 cob(I)yrinic acid a,c 94.9 0.33 7.1E-06 44.0 10.5 134 139-294 24-166 (178)
334 TIGR03689 pup_AAA proteasome A 94.9 0.073 1.6E-06 56.9 7.4 18 136-153 216-233 (512)
335 COG1474 CDC6 Cdc6-related prot 94.8 0.49 1.1E-05 48.7 13.1 30 244-274 122-151 (366)
336 TIGR00064 ftsY signal recognit 94.8 0.6 1.3E-05 46.0 13.2 56 243-298 152-214 (272)
337 CHL00181 cbbX CbbX; Provisiona 94.7 0.47 1E-05 47.2 12.4 20 136-155 59-78 (287)
338 PRK14723 flhF flagellar biosyn 94.7 0.16 3.5E-06 56.6 9.9 68 226-297 248-317 (767)
339 COG1219 ClpX ATP-dependent pro 94.7 0.051 1.1E-06 53.0 5.2 26 136-163 97-122 (408)
340 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.22 4.8E-06 47.8 9.9 51 135-195 19-69 (229)
341 TIGR03015 pepcterm_ATPase puta 94.7 0.12 2.6E-06 51.0 8.3 32 122-153 24-60 (269)
342 TIGR00595 priA primosomal prot 94.7 0.18 3.8E-06 54.6 10.0 92 328-420 8-102 (505)
343 TIGR01425 SRP54_euk signal rec 94.7 0.61 1.3E-05 48.8 13.3 54 244-297 181-235 (429)
344 COG2909 MalT ATP-dependent tra 94.6 0.11 2.3E-06 57.5 8.0 129 137-288 38-172 (894)
345 KOG0742 AAA+-type ATPase [Post 94.6 0.13 2.8E-06 51.9 7.8 48 99-153 352-401 (630)
346 PRK06645 DNA polymerase III su 94.6 0.26 5.6E-06 52.9 10.9 19 137-155 44-62 (507)
347 COG3972 Superfamily I DNA and 94.6 0.22 4.8E-06 51.5 9.6 80 109-197 151-230 (660)
348 PRK14960 DNA polymerase III su 94.6 0.15 3.3E-06 55.6 9.0 39 244-283 117-155 (702)
349 PRK09111 DNA polymerase III su 94.6 0.23 4.9E-06 54.6 10.5 40 243-283 130-169 (598)
350 KOG0331 ATP-dependent RNA heli 94.6 0.16 3.4E-06 53.7 8.9 72 171-250 339-414 (519)
351 PRK12724 flagellar biosynthesi 94.6 0.44 9.4E-06 49.5 11.9 54 244-297 298-356 (432)
352 TIGR00643 recG ATP-dependent D 94.6 0.16 3.5E-06 56.7 9.6 94 328-421 267-367 (630)
353 PRK08691 DNA polymerase III su 94.6 0.19 4.2E-06 55.3 9.8 40 243-283 117-156 (709)
354 PRK08699 DNA polymerase III su 94.5 0.36 7.8E-06 48.9 11.2 41 244-285 112-152 (325)
355 TIGR02880 cbbX_cfxQ probable R 94.5 0.53 1.1E-05 46.8 12.1 19 136-154 58-76 (284)
356 KOG0730 AAA+-type ATPase [Post 94.5 0.33 7.2E-06 52.2 11.0 57 94-153 426-485 (693)
357 PRK07940 DNA polymerase III su 94.5 0.2 4.3E-06 52.1 9.3 42 243-285 115-156 (394)
358 PRK06067 flagellar accessory p 94.3 0.21 4.5E-06 48.2 8.7 51 136-196 25-75 (234)
359 PRK14961 DNA polymerase III su 94.3 0.18 4E-06 52.1 8.8 39 244-283 118-156 (363)
360 PF03969 AFG1_ATPase: AFG1-lik 94.3 0.56 1.2E-05 48.2 12.1 47 243-290 125-172 (362)
361 PRK14952 DNA polymerase III su 94.3 0.12 2.7E-06 56.3 7.6 40 243-283 116-155 (584)
362 PF03796 DnaB_C: DnaB-like hel 94.3 0.13 2.9E-06 50.4 7.4 137 136-285 19-179 (259)
363 cd03115 SRP The signal recogni 94.3 0.66 1.4E-05 42.3 11.5 54 244-297 81-135 (173)
364 PRK14949 DNA polymerase III su 94.2 0.1 2.2E-06 58.7 7.0 38 244-282 118-155 (944)
365 PRK06620 hypothetical protein; 94.2 0.12 2.7E-06 48.9 6.8 40 245-288 85-125 (214)
366 COG1222 RPT1 ATP-dependent 26S 94.2 0.58 1.3E-05 46.7 11.2 18 136-153 185-202 (406)
367 PHA00350 putative assembly pro 94.2 0.32 6.9E-06 50.2 9.9 23 139-161 4-27 (399)
368 PRK06090 DNA polymerase III su 94.2 0.15 3.2E-06 51.3 7.4 44 243-287 106-149 (319)
369 PRK07993 DNA polymerase III su 94.2 0.15 3.3E-06 51.8 7.6 43 243-286 106-148 (334)
370 COG2109 BtuR ATP:corrinoid ade 94.1 0.39 8.5E-06 43.4 9.1 54 243-296 120-175 (198)
371 PRK08840 replicative DNA helic 94.1 0.66 1.4E-05 49.5 12.5 121 129-258 210-342 (464)
372 KOG1513 Nuclear helicase MOP-3 94.0 0.061 1.3E-06 58.3 4.5 163 121-294 264-462 (1300)
373 PRK07994 DNA polymerase III su 94.0 0.29 6.3E-06 53.9 9.8 38 244-282 118-155 (647)
374 TIGR02928 orc1/cdc6 family rep 94.0 0.3 6.6E-06 50.6 9.7 25 137-162 41-65 (365)
375 PRK14959 DNA polymerase III su 94.0 0.093 2E-06 57.2 5.9 19 137-155 39-57 (624)
376 PRK07004 replicative DNA helic 94.0 0.32 6.9E-06 51.9 9.9 113 136-258 213-337 (460)
377 PRK07471 DNA polymerase III su 93.9 0.19 4.1E-06 51.8 7.8 44 243-287 139-182 (365)
378 PRK08506 replicative DNA helic 93.9 0.5 1.1E-05 50.6 11.3 112 136-258 192-315 (472)
379 PRK05748 replicative DNA helic 93.9 0.52 1.1E-05 50.4 11.4 113 136-258 203-327 (448)
380 COG3267 ExeA Type II secretory 93.9 0.46 1E-05 45.2 9.5 28 133-161 47-75 (269)
381 PRK00440 rfc replication facto 93.9 0.61 1.3E-05 47.3 11.5 39 244-283 101-139 (319)
382 TIGR01243 CDC48 AAA family ATP 93.8 0.33 7E-06 55.4 10.2 55 97-153 448-504 (733)
383 PF05872 DUF853: Bacterial pro 93.7 0.14 3E-06 52.8 6.2 46 243-288 252-302 (502)
384 COG0470 HolB ATPase involved i 93.7 0.49 1.1E-05 48.1 10.6 40 244-284 108-147 (325)
385 PRK13833 conjugal transfer pro 93.7 0.19 4.1E-06 50.6 7.2 63 114-185 123-186 (323)
386 KOG0741 AAA+-type ATPase [Post 93.7 0.17 3.6E-06 52.9 6.8 57 94-153 211-273 (744)
387 PRK04328 hypothetical protein; 93.7 0.21 4.5E-06 48.7 7.3 51 136-196 23-73 (249)
388 PF06745 KaiC: KaiC; InterPro 93.7 0.086 1.9E-06 50.6 4.6 131 136-285 19-159 (226)
389 TIGR03499 FlhF flagellar biosy 93.6 0.21 4.5E-06 49.6 7.3 19 137-155 195-213 (282)
390 KOG0745 Putative ATP-dependent 93.6 0.086 1.9E-06 53.6 4.5 35 137-182 227-261 (564)
391 PRK14951 DNA polymerase III su 93.6 0.33 7.2E-06 53.3 9.4 17 139-155 41-57 (618)
392 PF06733 DEAD_2: DEAD_2; Inte 93.6 0.062 1.3E-06 49.2 3.3 45 215-259 113-159 (174)
393 PRK14963 DNA polymerase III su 93.6 0.44 9.6E-06 51.3 10.2 28 243-274 114-141 (504)
394 KOG0729 26S proteasome regulat 93.6 1.1 2.4E-05 42.6 11.4 56 96-153 171-228 (435)
395 KOG1133 Helicase of the DEAD s 93.6 0.59 1.3E-05 50.5 10.7 76 344-422 629-720 (821)
396 PRK08006 replicative DNA helic 93.6 0.99 2.2E-05 48.3 12.7 114 136-258 224-349 (471)
397 PRK03992 proteasome-activating 93.5 0.39 8.4E-06 50.2 9.3 17 137-153 166-182 (389)
398 TIGR00665 DnaB replicative DNA 93.5 0.66 1.4E-05 49.4 11.3 139 136-285 195-354 (434)
399 PRK14957 DNA polymerase III su 93.4 0.24 5.2E-06 53.6 7.8 40 243-283 117-156 (546)
400 PRK11034 clpA ATP-dependent Cl 93.4 0.59 1.3E-05 52.9 11.2 45 246-290 279-327 (758)
401 PRK14721 flhF flagellar biosyn 93.4 2.7 6E-05 43.9 15.3 55 243-297 267-323 (420)
402 TIGR00678 holB DNA polymerase 93.4 1.2 2.5E-05 41.3 11.6 39 243-282 94-132 (188)
403 KOG0740 AAA+-type ATPase [Post 93.4 0.4 8.6E-06 49.6 8.9 53 244-296 244-309 (428)
404 PRK10867 signal recognition pa 93.4 0.75 1.6E-05 48.4 11.2 54 244-297 182-236 (433)
405 PRK04841 transcriptional regul 93.4 0.91 2E-05 53.5 13.4 45 244-288 120-164 (903)
406 PRK05636 replicative DNA helic 93.4 0.86 1.9E-05 49.1 11.9 111 137-258 266-388 (505)
407 PRK09112 DNA polymerase III su 93.3 0.59 1.3E-05 47.9 10.2 42 243-285 139-180 (351)
408 COG1702 PhoH Phosphate starvat 93.3 0.14 3E-06 50.8 5.3 57 118-181 125-181 (348)
409 PTZ00454 26S protease regulato 93.3 0.95 2.1E-05 47.2 11.8 56 95-153 138-196 (398)
410 PRK08760 replicative DNA helic 93.3 0.51 1.1E-05 50.6 10.0 111 137-258 230-352 (476)
411 PF05729 NACHT: NACHT domain 93.3 0.63 1.4E-05 41.7 9.4 23 138-161 2-24 (166)
412 TIGR02782 TrbB_P P-type conjug 93.2 0.33 7.2E-06 48.6 8.1 65 112-185 109-174 (299)
413 TIGR00416 sms DNA repair prote 93.2 0.7 1.5E-05 49.2 10.8 97 129-258 82-183 (454)
414 PRK14969 DNA polymerase III su 93.2 0.6 1.3E-05 50.7 10.5 40 243-283 117-156 (527)
415 TIGR03878 thermo_KaiC_2 KaiC d 93.1 1 2.3E-05 44.1 11.3 37 136-181 36-72 (259)
416 PRK14962 DNA polymerase III su 93.0 0.77 1.7E-05 49.1 10.9 17 138-154 38-54 (472)
417 PRK13894 conjugal transfer ATP 93.0 0.24 5.2E-06 50.0 6.7 66 111-185 124-190 (319)
418 PF01443 Viral_helicase1: Vira 92.9 0.09 2E-06 50.7 3.5 13 139-151 1-13 (234)
419 TIGR03880 KaiC_arch_3 KaiC dom 92.9 0.7 1.5E-05 44.2 9.6 52 136-197 16-67 (224)
420 PF00265 TK: Thymidine kinase; 92.8 0.11 2.3E-06 47.5 3.5 35 139-182 4-38 (176)
421 TIGR01243 CDC48 AAA family ATP 92.7 0.69 1.5E-05 52.8 10.7 55 97-153 173-229 (733)
422 KOG0739 AAA+-type ATPase [Post 92.7 3.6 7.8E-05 40.1 13.5 141 96-292 127-283 (439)
423 PRK10416 signal recognition pa 92.7 2.2 4.7E-05 43.1 13.0 55 243-297 194-255 (318)
424 PRK05896 DNA polymerase III su 92.7 0.29 6.4E-06 53.2 7.2 18 137-154 39-56 (605)
425 COG2255 RuvB Holliday junction 92.6 0.42 9.1E-06 46.2 7.2 17 137-153 53-69 (332)
426 PRK14965 DNA polymerase III su 92.6 0.7 1.5E-05 50.9 10.1 40 243-283 117-156 (576)
427 TIGR00635 ruvB Holliday juncti 92.6 0.22 4.7E-06 50.3 5.8 17 137-153 31-47 (305)
428 PRK07133 DNA polymerase III su 92.6 0.26 5.5E-06 54.8 6.6 16 139-154 43-58 (725)
429 PRK14950 DNA polymerase III su 92.5 0.81 1.8E-05 50.6 10.6 17 138-154 40-56 (585)
430 PRK00080 ruvB Holliday junctio 92.5 0.65 1.4E-05 47.4 9.1 18 137-154 52-69 (328)
431 COG1110 Reverse gyrase [DNA re 92.5 0.41 8.8E-06 54.0 7.9 77 343-419 124-211 (1187)
432 PRK07399 DNA polymerase III su 92.4 0.54 1.2E-05 47.4 8.3 53 231-286 111-163 (314)
433 TIGR00959 ffh signal recogniti 92.3 1.2 2.6E-05 46.8 11.0 54 244-297 181-235 (428)
434 cd03239 ABC_SMC_head The struc 92.3 0.27 5.8E-06 45.2 5.5 42 243-284 114-156 (178)
435 TIGR03346 chaperone_ClpB ATP-d 92.3 1.2 2.5E-05 51.7 11.9 17 137-153 195-211 (852)
436 PRK04537 ATP-dependent RNA hel 92.2 1.2 2.5E-05 49.2 11.3 71 173-251 257-331 (572)
437 PF04665 Pox_A32: Poxvirus A32 92.1 2.5 5.5E-05 40.5 12.0 23 138-161 15-37 (241)
438 KOG0732 AAA+-type ATPase conta 92.1 0.47 1E-05 54.3 8.0 146 96-286 259-414 (1080)
439 TIGR01241 FtsH_fam ATP-depende 92.1 0.82 1.8E-05 49.5 9.9 55 96-153 49-105 (495)
440 COG1485 Predicted ATPase [Gene 92.1 2 4.3E-05 43.1 11.4 109 137-290 66-175 (367)
441 PHA00012 I assembly protein 92.1 1.4 3.1E-05 43.7 10.3 25 139-163 4-28 (361)
442 TIGR00602 rad24 checkpoint pro 92.0 1 2.3E-05 49.7 10.5 16 138-153 112-127 (637)
443 TIGR02639 ClpA ATP-dependent C 92.0 1.4 3.1E-05 50.2 12.0 17 137-153 204-220 (731)
444 PF03237 Terminase_6: Terminas 92.0 1.5 3.3E-05 45.3 11.6 144 140-301 1-154 (384)
445 PRK08451 DNA polymerase III su 92.0 0.43 9.4E-06 51.4 7.4 40 243-283 115-154 (535)
446 COG4962 CpaF Flp pilus assembl 92.0 0.2 4.3E-06 49.9 4.4 61 118-188 154-215 (355)
447 KOG0333 U5 snRNP-like RNA heli 91.8 0.83 1.8E-05 47.7 8.7 70 173-250 517-590 (673)
448 PRK06321 replicative DNA helic 91.8 2.1 4.6E-05 45.8 12.3 111 137-258 227-349 (472)
449 TIGR02868 CydC thiol reductant 91.8 0.53 1.2E-05 51.6 8.1 41 243-283 486-526 (529)
450 TIGR02688 conserved hypothetic 91.7 1 2.2E-05 46.6 9.3 24 131-154 204-227 (449)
451 PRK06995 flhF flagellar biosyn 91.7 4.5 9.7E-05 43.2 14.4 21 137-157 257-277 (484)
452 PRK09087 hypothetical protein; 91.7 0.56 1.2E-05 44.9 7.1 40 247-288 89-129 (226)
453 KOG0737 AAA+-type ATPase [Post 91.7 1.5 3.2E-05 44.1 10.1 56 98-153 88-144 (386)
454 cd01393 recA_like RecA is a b 91.6 0.59 1.3E-05 44.7 7.4 44 136-182 19-62 (226)
455 TIGR02655 circ_KaiC circadian 91.6 0.98 2.1E-05 48.7 9.7 60 127-196 249-313 (484)
456 KOG0298 DEAD box-containing he 91.5 0.26 5.6E-06 56.6 5.2 101 343-447 1220-1321(1394)
457 TIGR00763 lon ATP-dependent pr 91.5 2.9 6.3E-05 48.0 13.9 17 137-153 348-364 (775)
458 TIGR00631 uvrb excinuclease AB 91.5 4.6 9.9E-05 45.2 14.9 77 173-257 442-522 (655)
459 PRK14955 DNA polymerase III su 91.5 1.8 3.9E-05 45.4 11.2 18 138-155 40-57 (397)
460 KOG0701 dsRNA-specific nucleas 91.5 0.14 3E-06 61.1 3.2 92 346-437 294-398 (1606)
461 cd00983 recA RecA is a bacter 91.4 0.38 8.3E-06 48.3 5.9 45 136-189 55-99 (325)
462 TIGR02237 recomb_radB DNA repa 91.4 1.2 2.5E-05 42.1 9.1 38 136-182 12-49 (209)
463 TIGR02012 tigrfam_recA protein 91.4 0.37 8E-06 48.4 5.7 44 136-188 55-98 (321)
464 cd01128 rho_factor Transcripti 91.4 0.46 9.9E-06 46.1 6.2 19 133-151 13-31 (249)
465 CHL00176 ftsH cell division pr 91.4 1 2.2E-05 50.0 9.6 17 137-153 217-233 (638)
466 PRK13900 type IV secretion sys 91.3 1.3 2.9E-05 45.0 9.8 44 132-185 156-199 (332)
467 KOG0652 26S proteasome regulat 91.3 2.1 4.6E-05 40.7 10.1 17 137-153 206-222 (424)
468 PRK13851 type IV secretion sys 91.2 0.25 5.5E-06 50.2 4.5 45 132-186 158-202 (344)
469 TIGR00767 rho transcription te 91.2 1.2 2.5E-05 46.0 9.1 28 133-161 165-192 (415)
470 PRK05595 replicative DNA helic 91.1 0.66 1.4E-05 49.4 7.7 114 136-259 201-325 (444)
471 TIGR01242 26Sp45 26S proteasom 91.0 1.4 3E-05 45.7 9.8 18 136-153 156-173 (364)
472 PRK05563 DNA polymerase III su 91.0 0.56 1.2E-05 51.4 7.1 18 138-155 40-57 (559)
473 PRK12608 transcription termina 91.0 1.7 3.6E-05 44.5 9.9 38 124-162 118-158 (380)
474 KOG0741 AAA+-type ATPase [Post 90.9 1.8 3.9E-05 45.5 10.0 69 103-182 493-573 (744)
475 TIGR03345 VI_ClpV1 type VI sec 90.9 2.3 5E-05 49.2 12.2 28 126-153 192-225 (852)
476 KOG0058 Peptide exporter, ABC 90.9 0.79 1.7E-05 50.1 7.8 137 134-281 492-658 (716)
477 PTZ00110 helicase; Provisional 90.8 1.6 3.4E-05 48.0 10.4 71 173-251 377-451 (545)
478 PRK09376 rho transcription ter 90.7 2 4.2E-05 44.2 10.1 27 134-161 167-193 (416)
479 PRK10865 protein disaggregatio 90.6 1.2 2.6E-05 51.6 9.6 17 137-153 200-216 (857)
480 PF01637 Arch_ATPase: Archaeal 90.5 1.1 2.4E-05 42.7 8.2 55 228-286 105-165 (234)
481 COG0552 FtsY Signal recognitio 90.5 3.4 7.4E-05 41.2 11.3 127 139-297 142-280 (340)
482 PRK10263 DNA translocase FtsK; 90.5 1.3 2.8E-05 52.1 9.5 26 137-162 1011-1036(1355)
483 COG2804 PulE Type II secretory 90.5 0.51 1.1E-05 49.6 5.9 40 122-162 242-283 (500)
484 PRK08058 DNA polymerase III su 90.4 0.74 1.6E-05 46.9 7.1 41 243-284 108-148 (329)
485 TIGR02858 spore_III_AA stage I 90.4 1.1 2.3E-05 44.1 7.9 15 137-151 112-126 (270)
486 PRK10590 ATP-dependent RNA hel 90.4 2 4.4E-05 46.0 10.7 70 173-250 245-318 (456)
487 COG0378 HypB Ni2+-binding GTPa 90.4 6.8 0.00015 36.0 12.1 32 264-295 163-194 (202)
488 PRK09165 replicative DNA helic 90.3 2.2 4.7E-05 46.1 10.8 120 137-258 218-354 (497)
489 COG0513 SrmB Superfamily II DN 90.2 2 4.4E-05 46.6 10.5 69 174-250 274-346 (513)
490 PRK09361 radB DNA repair and r 90.1 0.89 1.9E-05 43.5 7.0 37 136-181 23-59 (225)
491 PF05707 Zot: Zonular occluden 90.1 0.57 1.2E-05 43.6 5.4 18 139-156 3-20 (193)
492 CHL00095 clpC Clp protease ATP 90.1 1.9 4.1E-05 49.9 10.7 17 137-153 201-217 (821)
493 PRK14954 DNA polymerase III su 90.0 2.3 5E-05 47.0 10.8 18 138-155 40-57 (620)
494 KOG1133 Helicase of the DEAD s 89.9 0.51 1.1E-05 50.9 5.4 46 119-164 13-62 (821)
495 COG1198 PriA Primosomal protei 89.9 1.9 4.2E-05 48.1 10.1 104 319-423 219-325 (730)
496 COG1132 MdlB ABC-type multidru 89.9 1.3 2.8E-05 49.0 9.0 135 133-283 352-521 (567)
497 COG1200 RecG RecG-like helicas 89.8 4.9 0.00011 43.9 12.6 134 333-473 300-443 (677)
498 PRK09354 recA recombinase A; P 89.8 2.9 6.2E-05 42.6 10.4 94 128-252 46-145 (349)
499 COG1066 Sms Predicted ATP-depe 89.7 3.8 8.1E-05 42.0 11.0 123 133-289 90-222 (456)
500 PLN00020 ribulose bisphosphate 89.7 0.39 8.5E-06 48.6 4.1 71 139-258 151-225 (413)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-68 Score=539.68 Aligned_cols=376 Identities=43% Similarity=0.711 Sum_probs=352.5
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
.|+.+++++++...|+..+|..|||+|.+.||.++.++|++.++.||||||++|++|++.++.+......+..+|.+|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999876566666779999999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCc--eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 180 APTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
+||||||.|+.+++.++..... .+|++|+.+...+.+.++++++|+|+||++|.++++...+.+.++.++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 9999999999999999887555 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHH
Q 007085 258 LSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 336 (618)
++++|.++++.|+..+ ++..|+|++|||||.+++.++..|+.++..+.+....+......+.++...++...|...+..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 566689999999999999999999999999988766566667778888888888889999999
Q ss_pred HHHHhh--cCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCcc
Q 007085 337 LITEHA--KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 337 ~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~ 413 (618)
+|.... .+.|+||||++++.|+.|...|.+. +++..|||+.++.+|+.+++.|++|++.|||||+++++|||||+|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 988875 5679999999999999999999885 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccccc
Q 007085 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
+||+||+|.++++|+||+||+||++++|.+++|++..+......+.+.+....++++..+..
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999998888887775544
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-63 Score=469.14 Aligned_cols=367 Identities=35% Similarity=0.584 Sum_probs=337.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
.+...+|.++++.+++.++++..+|..||++|+++||.++.++|+|..++||||||.+|++|+++.++.. ...+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~------p~~~ 130 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE------PKLF 130 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC------CCCc
Confidence 3456689999999999999999999999999999999999999999999999999999999999999872 2247
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHH-hcCCCCCCcceEEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~-~~~~~~~~~~~vVi 251 (618)
.+||++||||||.|+.+.+..+.. ++++.++.|+.....+...+.+.++|||+||++|.+++. .+.+.+..++++|+
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 899999999999999999999865 456788999999999999999999999999999999998 46688999999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (618)
||||++++++|.+.+..|+..+|..+|++++|||++..+.++....+.+|..+.. .....+.+.+.++++......|.
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~--s~ky~tv~~lkQ~ylfv~~k~K~ 288 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAV--SSKYQTVDHLKQTYLFVPGKDKD 288 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEec--cchhcchHHhhhheEeccccccc
Confidence 9999999999999999999999999999999999999999999888999988864 33445566777778888888999
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~ 410 (618)
..+..++++. .+..+||||++...++.++-.|+.. +.+..+||+|+++.|.-+++.|+++.+.||||||++++|+|+|
T Consensus 289 ~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 289 TYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred hhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 9999999876 4579999999999999999999764 9999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCC
Q 007085 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 411 ~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
.+++|||||.|.+..+|+||+||++|+|..|.++.+++..|.+.+..|+..+.+..+.++
T Consensus 368 ~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred CceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccC
Confidence 999999999999999999999999999999999999999999999999999998876643
No 3
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.1e-60 Score=501.14 Aligned_cols=365 Identities=36% Similarity=0.634 Sum_probs=319.4
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+|+++++++.+++.|.+.+|..|||+|.++|+.++.++|+|+++|||+|||++|++|+++.+.............++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999998653322111234589999
Q ss_pred cCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
+||++||.|+++.+.++.. .+.+..++++.+...+...+...++|||+||++|++++....+.+.++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998764 45677788998888877778888999999999999998888888999999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHH
Q 007085 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 337 (618)
++++|...+..++..++...|++++|||+++.+..+...++.++..+.+.... .....+.......+...+..++..+
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877654322 2223344454555555566666666
Q ss_pred HHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEE
Q 007085 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416 (618)
Q Consensus 338 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI 416 (618)
+... ...++||||++++.++.+++.|.+ .+.+..+|++|++.+|.++++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 6543 456899999999999999999966 48899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcc
Q 007085 417 HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 417 ~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
+|++|.++++|+||+||+||.+..|.|+++++..+...++.+++.+...++
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999887663
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5e-60 Score=508.63 Aligned_cols=381 Identities=34% Similarity=0.550 Sum_probs=334.8
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007085 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~ 172 (618)
..+.+..+|+++++++.+++.|++.+|.+|||+|.++||.+++++|+|+++|||||||++|++|++.++..... .....
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~ 202 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGD 202 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCC
Confidence 34567788999999999999999999999999999999999999999999999999999999999988765321 12234
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
++.+|||+||++||.|++++++++.. .+++.+++++.+...+...+...++|||+||++|.+++.+....+.++++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 78999999999999999999998765 4667888999988888888888999999999999999998888899999999
Q ss_pred EccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcC-CCcEEEeccCCcccccCCeEEEEEeccCCc
Q 007085 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (618)
|||||++++++|..++..++..+++++|++++|||+++.+..+...++. ++..+.+. .........+.+.........
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg-~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVG-SLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEEC-CCccccCCCeeEEEEEEechh
Confidence 9999999999999999999999999999999999999999999888875 45555432 222222334555555556667
Q ss_pred chHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 007085 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 330 ~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gl 407 (618)
|...+..++.... ...++||||++++.|+.+++.|.. .+.+..+|+++++++|+++++.|++|+++|||||+++++||
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 7778888887765 577999999999999999999975 48999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccccc
Q 007085 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 408 Di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
|+|++++||+||+|.++++|+||+||+||.|++|.|++|+++.+...+..|.+.+....+++|..+..
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~ 509 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEK 509 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888876654
No 5
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-61 Score=457.82 Aligned_cols=430 Identities=33% Similarity=0.519 Sum_probs=372.0
Q ss_pred cccccCCcccccccccc---CCcCccchhHHhhhhh--ccccccc-cCCCCCCCCCCccC-CCCCHHHHHHHHHcCCCCC
Q 007085 50 IIKSRFSAGTREFHAIS---RPLDFKSSIAWQHAQS--AVDDYVA-YDDSSKDEGLDISK-LDISQDIVAALARRGISKL 122 (618)
Q Consensus 50 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~l 122 (618)
......|+..+.+.... ..+...+...|..... .+++... .....+.+..+|++ +...+++++.+++.+|.+|
T Consensus 164 ~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKP 243 (629)
T KOG0336|consen 164 FKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKP 243 (629)
T ss_pred cccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCC
Confidence 34455555555555443 2344455566765422 2222222 22234566667764 5678999999999999999
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh-CCCCc
Q 007085 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSLD 201 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~-~~~~~ 201 (618)
||+|.+|||.+++++|++..+.||+|||++||+|.+.++...........++.+|+++||++|+.|+.-+++++ +..++
T Consensus 244 tPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~k 323 (629)
T KOG0336|consen 244 TPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLK 323 (629)
T ss_pred CcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcc
Confidence 99999999999999999999999999999999999988877666666677899999999999999999888764 45788
Q ss_pred eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEE
Q 007085 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281 (618)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~ 281 (618)
.+|++++.+...+.+.++.+.+|+++||.+|.++.....+++..+.++|+||||+|++++|.+++++|+-.+++++|+++
T Consensus 324 svc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvm 403 (629)
T KOG0336|consen 324 SVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVM 403 (629)
T ss_pred eEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHH
Q 007085 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361 (618)
Q Consensus 282 lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~ 361 (618)
.|||||+.++.++..|+.+|..+.+ ...+......+.+..+.....+|..++..+++.+....++||||..+..++.|.
T Consensus 404 TSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LS 482 (629)
T KOG0336|consen 404 TSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLS 482 (629)
T ss_pred ecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhcc
Confidence 9999999999999999999988754 344444445566777888888999999999999999999999999999999998
Q ss_pred HHHH-hcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCc
Q 007085 362 HAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK 440 (618)
Q Consensus 362 ~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~ 440 (618)
..|. +.+....+||...+.+|+..++.|++|+++|||||+++++|||+++++||++||+|.+++.|+||+||+||+|++
T Consensus 483 Sd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~ 562 (629)
T KOG0336|consen 483 SDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRT 562 (629)
T ss_pred chhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCC
Confidence 8875 458899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEechhhHHHHHHHHHHhcCCcccCCcccccCCCcc
Q 007085 441 GSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDM 480 (618)
Q Consensus 441 g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 480 (618)
|.++.|++.+|...++.|.+.|+..-+++|+-++..+..+
T Consensus 563 G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 563 GTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred cceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 9999999999999999999999999999998777766444
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-59 Score=496.10 Aligned_cols=364 Identities=43% Similarity=0.737 Sum_probs=331.2
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
..|+++++++++++.|.+.+|..|||+|.++||.++.++|++++++||||||++|++|+++.+... . ......+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~--~~~~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--V--ERKYVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--c--ccCCCceEE
Confidence 568999999999999999999999999999999999999999999999999999999999997542 0 111111999
Q ss_pred EcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
++||+|||.|+++++.++.. .+.+.+++|+.+...+...++.+++|||+||++|++++.+..+.+..+.++|+||||
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 99999999999999998765 567889999999999999898889999999999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCc-chHHH
Q 007085 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSII 334 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 334 (618)
+|++++|.+.+..|+..++.+.|++++|||+|+.+..+...++.+|..+.+...........+.++++.+.... |...+
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L 264 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887754444446677888888877765 89999
Q ss_pred HHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCcc
Q 007085 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 335 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~ 413 (618)
..+++.... .++||||+++..++.++..|... +++..|||++++++|.++++.|++++.+||||||++++|||||+++
T Consensus 265 ~~ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 265 LKLLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 999887644 37999999999999999999765 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh-hHHHHHHHHHHhcCCcc
Q 007085 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFT 467 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~ 467 (618)
+|||||.|.+++.|+||+||+||+|..|.+++|+++. +...+..+++.+...++
T Consensus 344 ~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 344 HVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999986 88899999998876644
No 7
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.3e-57 Score=487.26 Aligned_cols=367 Identities=34% Similarity=0.589 Sum_probs=317.3
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc-CCCCCCeEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPLCL 177 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~-~~~~~~~~l 177 (618)
.+|+++++++.+++.|.+.+|..|||+|.++||.+++++|+++++|||||||++|++|++..+.+..... .....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999887532211 112257899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCcceEEEccc
Q 007085 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vViDEa 254 (618)
||+||++|+.|+++.+.++.. .+.+..++++.....+...+...++|||+||++|++++.+. .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999999999998765 35677889999988888888888999999999999988765 466889999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCC--CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchH
Q 007085 255 DQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (618)
|+|++++|...+..++..++. ..|+++||||+++.+..+...++.++..+.+... ......+.+.........+..
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE--TITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc--cccccceeEEEEecCHHHHHH
Confidence 999999999999999999986 7899999999999999999888888766644222 122233444444555556666
Q ss_pred HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC
Q 007085 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 333 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~ 411 (618)
.+..++... +..++||||++++.++.+++.|.+. +.+..+|++|++.+|+++++.|++++++|||||+++++|||+|+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 666666543 4679999999999999999999664 89999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
+++||+||+|.++++|+||+||+||.|+.|.|++|+++.+...+..+++.+...++.
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999988899998888776543
No 8
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-58 Score=420.60 Aligned_cols=367 Identities=34% Similarity=0.589 Sum_probs=330.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
...+|+++++.+++++.++..+|++|..+|+.|++.|++++|+++++..|+|||.+|-+.++..+.- .....++
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ~ 98 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQA 98 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceeeE
Confidence 4457999999999999999999999999999999999999999999999999999998887776532 1224689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
||+.||++||.|+.+.+..+.. ++.+..+.|+.+..+..+.+..+.+++.+||+++++++++..+..+.++++|+|||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 9999999999999999998775 45567788999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCC-cchHH
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 333 (618)
|.|++.+|.+++..+++.+|+.+|++++|||+|.++.++...|+.+|..+-+.. +......+.++++..+.+ .|.+.
T Consensus 179 DemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkr--deltlEgIKqf~v~ve~EewKfdt 256 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKR--DELTLEGIKQFFVAVEKEEWKFDT 256 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEec--CCCchhhhhhheeeechhhhhHhH
Confidence 999999999999999999999999999999999999999999999999885532 223334455555555544 48888
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
+.++...+. -.+.+|||++++.++.|.+.+.+. +.+..+||+|++++|++++.+|++++.+|||+|++.++|+|+|.+
T Consensus 257 LcdLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 257 LCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 888877653 347899999999999999999765 889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCcc
Q 007085 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
++|||||.|.+.+.|+|||||.||.|++|.++-|+...|...+..+++.+...+.++|..
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 999999999999999999999999999999999999999999999999999988887753
No 9
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.1e-58 Score=449.86 Aligned_cols=368 Identities=37% Similarity=0.598 Sum_probs=331.3
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhh---cC
Q 007085 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HG 169 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~---~~ 169 (618)
..+.+..+|++.++|.++++.+.+.++..|+|+|+.+||..++++|+|..++||||||++|++|++..|...+.. ..
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 346788899999999999999999999999999999999999999999999999999999999999998774421 12
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007085 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (618)
...++.++|++||++|++|+.++-.++.. .++++.+.|+....++--.+..+|+|+|+||++|.+.|.+..+.+.++.
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 23588999999999999999999988775 4567888899998888777889999999999999999999999999999
Q ss_pred eEEEccchhccCCCcHHHHHHHHHHCCC-------------------------CCcEEEEEeeCchHHHHHHHHhcCCCc
Q 007085 248 FVVLDEADQMLSVGFAEDVEVILERLPQ-------------------------NRQSMMFSATMPPWIRSLTNKYLKNPL 302 (618)
Q Consensus 248 ~vViDEaH~~~~~~~~~~~~~il~~l~~-------------------------~~~~l~lSAT~~~~~~~~~~~~l~~~~ 302 (618)
+||+|||++|.+++|.+++..++..+|. -+|.++||||+|+.+..++..||.+|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999999863 158999999999999999999999999
Q ss_pred EEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHH
Q 007085 303 TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQ 381 (618)
Q Consensus 303 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~ 381 (618)
.+.+- ........+++.....+.+.+...|..+++.. -..++|||+|+++.|+.|++.|.+. ++|..+||+-++++
T Consensus 479 ~vtig--~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 479 VVTIG--SAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred EEEec--cCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 98762 33444566777777788888888999998876 3459999999999999999999764 99999999999999
Q ss_pred HHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHH
Q 007085 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461 (618)
Q Consensus 382 r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 461 (618)
|+.++..|+++...|||||+++++|||||+|.+||+||++.++++|+|||||+||+|+.|.++.|+++.+...+..|.+.
T Consensus 556 Re~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~ 635 (673)
T KOG0333|consen 556 RENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQA 635 (673)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877777766
Q ss_pred hc
Q 007085 462 VG 463 (618)
Q Consensus 462 l~ 463 (618)
+-
T Consensus 636 l~ 637 (673)
T KOG0333|consen 636 LR 637 (673)
T ss_pred HH
Confidence 64
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-56 Score=473.49 Aligned_cols=369 Identities=36% Similarity=0.583 Sum_probs=321.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc-CCCCCCe
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~-~~~~~~~ 175 (618)
+..+|+++++++.+++.|+..+|..|+|+|+++||.++.++|+++++|||||||++|++|++..+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346799999999999999999999999999999999999999999999999999999999999987633211 1123578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
+|||+||++||.|+++.+..+.. ++.+..++++.....+...+...++|||+||++|.+++....+.+.++++|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999887654 4667788888888888888888899999999999999988888899999999999
Q ss_pred chhccCCCcHHHHHHHHHHCCC--CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch
Q 007085 254 ADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (618)
||++++++|...+..++..++. ..+.+++|||++..+..+...++.+|..+.+.... .....+...........|.
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCCHHHHH
Confidence 9999999999999999999874 45679999999999999998888888777653322 2223344444455555677
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~ 410 (618)
..+..++... ...++||||++++.|+.+++.|.+ .+.+..+|++|++++|.++++.|++|+++|||||+++++|||+|
T Consensus 244 ~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 244 RLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 7777777654 457899999999999999999965 58999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 411 ~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
++++||+||+|.++++|+||+||+||.|+.|.|++|+++.+...+..+++.+...++.
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPV 380 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999999999999999888877643
No 11
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-57 Score=444.18 Aligned_cols=381 Identities=35% Similarity=0.551 Sum_probs=344.5
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007085 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~ 172 (618)
..+.+...|+.++++..|+.++++..|.+|||+|.+++|..+.+++++-++.||||||.+|+.|++.+++...+.. ++.
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-~g~ 295 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-PGE 295 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc-CCC
Confidence 4456777899999999999999999999999999999999999999999999999999999999999998866554 467
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
+|..||+|||++||.|++.++++++. +++++++|++.+.+++...|+.++.||||||++|++++.....++.++.++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 99999999999999999999999864 6789999999999999999999999999999999999999999999999999
Q ss_pred EccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcc
Q 007085 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (618)
|||+++|++++|..+++.|...+++++|.|+||||++..++.++..+|.+|..+.... ......+......+..+...|
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~-vgean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGE-VGEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEee-hhccccchhheeeeccCcHHH
Confidence 9999999999999999999999999999999999999999999999999999886542 222333333444555666777
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi 409 (618)
..++...|......+++|||+..+..++.++..|. +.+.|..+|++|.+.+|.+++..|+...+.|||+|+++.+|+||
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI 534 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI 534 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc
Confidence 77777777666677899999999999999999985 45999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccccc
Q 007085 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
+++..||+||.-.+++.|.|||||+||+|.+|.+++++++.|....-.|...|+-.-+.+|..+..
T Consensus 535 ~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~d 600 (731)
T KOG0339|consen 535 PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMD 600 (731)
T ss_pred cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHH
Confidence 999999999999999999999999999999999999999999998888888888777777765443
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-57 Score=446.26 Aligned_cols=361 Identities=31% Similarity=0.523 Sum_probs=331.7
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
....|+...+++..+++++..+|..+|++|+..|+.++.++|+++.|.||+|||++|++|+++.+.+..... ..+..+
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~~~~v 157 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RNGTGV 157 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CCCeeE
Confidence 345688899999999999999999999999999999999999999999999999999999999998754433 246789
Q ss_pred EEEcCcHHHHHHHHHHHHHhC---CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC-CCCCCcceEEEc
Q 007085 177 LVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLD 252 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vViD 252 (618)
||||||++||.|++.+++++. +.+.+..+.|+.......+.+..+++|+|+||++|++++++.. +.+.+++++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999888754 3677888999999888888888899999999999999998753 557788999999
Q ss_pred cchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCC-CcEEEeccCCcccccCCeEEEEEeccCCcch
Q 007085 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (618)
|||++++.+|...++.|+..++..+|.++||||.++.++.+....+.. +..+..+..........+++.++.++...+.
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999999999999999999999999887765 8888888888888888899988888888888
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~ 410 (618)
.++..+++++....+++|||+|...+..+++.|.. .++|..|||++++..|..+..+|.+.+.-||||||+++||+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 88999999887779999999999999999999975 48999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHH
Q 007085 411 NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (618)
Q Consensus 411 ~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 459 (618)
+|++||+|++|.++++|+||+||++|.|+.|.++++..+.+...+..|+
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888887
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-56 Score=484.11 Aligned_cols=361 Identities=40% Similarity=0.662 Sum_probs=318.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
..|+++++++.++++|.+.+|.+|+|+|.++|+.+++++++|+++|||+|||++|++|++..+... ...+++||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~LI 79 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQILV 79 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEEE
Confidence 358899999999999999999999999999999999999999999999999999999999887431 23578999
Q ss_pred EcCcHHHHHHHHHHHHHhC---CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
||||++|+.|+++++.++. +.+.++.++++.....+...+...++|||+||++|++++.+..+.+.++++|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999887754 4677888999998888888888889999999999999999888889999999999999
Q ss_pred hccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHH
Q 007085 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (618)
.|++++|...+..++..++...|+++||||+|+.+..+...++.++..+.+.... .....+.+.+.......|...+.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHH
Confidence 9999999999999999999999999999999999999999999998877654322 22234444455555556777777
Q ss_pred HHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccE
Q 007085 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~ 414 (618)
.++... ...++||||+++..++.+++.|.+. +.+..+|++|++.+|+++++.|++|+++|||||+++++|||+|++++
T Consensus 238 ~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 238 RFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 777654 3468999999999999999999764 89999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
||+||+|.++++|+||+||+||.|+.|.|++++.+.+...++.+++.+...++.
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~ 370 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcce
Confidence 999999999999999999999999999999999998888888887776655433
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.5e-56 Score=475.94 Aligned_cols=360 Identities=35% Similarity=0.634 Sum_probs=323.0
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
.+|+++++++.+++.|.+.+|..|||+|+++|+.++.++|+++++|||||||++|++|++..+... ...+++||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~li 77 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALV 77 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEE
Confidence 468899999999999999999999999999999999999999999999999999999999987431 12458999
Q ss_pred EcCcHHHHHHHHHHHHHhC---CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
++||++|+.|++++++.+. +.+++..++++.+...+...+...++|+|+||++|.+++.+..+.+.++++||+||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999988764 3577888999999888888888889999999999999999888889999999999999
Q ss_pred hccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHH
Q 007085 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (618)
++++++|...+..++..+++..|++++|||+++.+..+...++.++..+.+.... ....+.+.........+...+.
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888764332 2233555556666666777888
Q ss_pred HHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccE
Q 007085 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~ 414 (618)
.++... ...++||||++++.++.+++.|.+ .+.+..+|++|++.+|+.+++.|++|+.+|||||+++++|||+|++++
T Consensus 235 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 877654 456899999999999999999976 489999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
||+|+.|.+++.|+||+||+||.|+.|.|++++.+.+...+..+++.++..+..
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999999999888765543
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4e-56 Score=477.29 Aligned_cols=381 Identities=28% Similarity=0.495 Sum_probs=327.4
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc-CC
Q 007085 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GR 170 (618)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~-~~ 170 (618)
...+.+..+|+++++++.+++.|++.+|..|||+|.++|+.+++++|+|+++|||||||++|++|++.++....... ..
T Consensus 114 ~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 114 EAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred CCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 34567888999999999999999999999999999999999999999999999999999999999999886532211 12
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 171 GRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++++|||+||++||.|+++.++.+... +.+.+++++.....+...+..+++|||+||++|.+++.+..+.+.++++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeE
Confidence 24689999999999999999998887653 4567788888888777778888999999999999999888888999999
Q ss_pred EEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCC
Q 007085 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328 (618)
Q Consensus 249 vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 328 (618)
|||||||+|++++|...+..++..++ +.|++++|||+++.+..+...++.++..+...... .....+.+........
T Consensus 274 lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~--~~~~~v~q~~~~~~~~ 350 (518)
T PLN00206 274 LVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN--RPNKAVKQLAIWVETK 350 (518)
T ss_pred EEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC--CCCcceeEEEEeccch
Confidence 99999999999999999999998884 68999999999999999999988888777653322 2223344444555555
Q ss_pred cchHHHHHHHHHhhc-CCcEEEEecchhHHHHHHHHHHh--cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcccc
Q 007085 329 EKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 329 ~~~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
.+...+..++..... ..++||||+++..++.+++.|.. .+.+..+||++++++|.++++.|++|+++|||||+++++
T Consensus 351 ~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~r 430 (518)
T PLN00206 351 QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGR 430 (518)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhc
Confidence 566666676665432 35899999999999999999964 588999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccccc
Q 007085 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 406 GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
|||+|++++||+||+|.++.+|+||+||+||.|..|.+++|+++.+...+..+.+.+....+.+|..+..
T Consensus 431 GiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred cCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999888888988888777777765543
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-58 Score=426.55 Aligned_cols=389 Identities=30% Similarity=0.569 Sum_probs=349.6
Q ss_pred hHHhhhhhc--cccccccCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHH
Q 007085 75 IAWQHAQSA--VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 75 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~ 152 (618)
..|...... .+.....++........|+++.+..+++..+...+|+.|.|+|+++||.++.++|+|..+..|+|||.+
T Consensus 59 ~dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a 138 (459)
T KOG0326|consen 59 KDWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAA 138 (459)
T ss_pred hhhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccc
Confidence 456654332 233334556677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHHHHhhcCCCEEEEChH
Q 007085 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPG 230 (618)
Q Consensus 153 ~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~ 230 (618)
|++|+++.+.. ....-+++|++||++||-|..+.++++... +.+.+.+|+++..+.+..+...++++|+||+
T Consensus 139 ~~IP~Lekid~------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPG 212 (459)
T KOG0326|consen 139 YCIPVLEKIDP------KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPG 212 (459)
T ss_pred eechhhhhcCc------cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCCh
Confidence 99999998743 233568999999999999988887776653 5677788999988888888889999999999
Q ss_pred HHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCC
Q 007085 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310 (618)
Q Consensus 231 ~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~ 310 (618)
+++++.++..-.+++..++|+||||.+++..|...+++++..+|+.+|++++|||+|-.+..+...++.+|..+++.++
T Consensus 213 RIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e- 291 (459)
T KOG0326|consen 213 RILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE- 291 (459)
T ss_pred hHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-
Confidence 9999999988889999999999999999999999999999999999999999999999999999999999999988543
Q ss_pred cccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHH
Q 007085 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAF 389 (618)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f 389 (618)
.....+.+++..+.+..|...+..+...+.- .+.+|||++...+|.+++.+.+ .+.|..+|+.|.++.|.++++.|
T Consensus 292 --Ltl~GvtQyYafV~e~qKvhCLntLfskLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 292 --LTLKGVTQYYAFVEERQKVHCLNTLFSKLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred --hhhcchhhheeeechhhhhhhHHHHHHHhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 3445677777888888899888888877643 4789999999999999999876 49999999999999999999999
Q ss_pred hcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccC
Q 007085 390 RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469 (618)
Q Consensus 390 ~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 469 (618)
++|.++.||||+.+.+|||++++++||+||+|.+.+.|+||+||.||.|+.|.++.+++-.|...+..+++.|+.+++++
T Consensus 369 r~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pi 448 (459)
T KOG0326|consen 369 RNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPI 448 (459)
T ss_pred hccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 007085 470 PRIA 473 (618)
Q Consensus 470 ~~~~ 473 (618)
|...
T Consensus 449 p~~i 452 (459)
T KOG0326|consen 449 PSNI 452 (459)
T ss_pred CCcC
Confidence 8654
No 17
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-56 Score=431.96 Aligned_cols=357 Identities=34% Similarity=0.596 Sum_probs=318.0
Q ss_pred CccCCC--CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 100 ~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
.|+++. +++++++++...+|..+||.|..+||.+++++|+++.++||||||++|++|+++.+.+...+.++. ..-+|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vgal 83 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGAL 83 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeEE
Confidence 455554 559999999999999999999999999999999999999999999999999999997655444332 45799
Q ss_pred EEcCcHHHHHHHHHHHHH---hCCCCceEEEEcCCchHHHHHHhhc-CCCEEEEChHHHHHHHHhcC--CCCCCcceEEE
Q 007085 178 VLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVL 251 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vVi 251 (618)
||+||+||+.|+.+.+.. .++++.+.++.|+.+.......+.+ .++|+|+||++|.+++.+.. +++.++.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 999999999999887654 3467889999999998888777765 58999999999999998743 45669999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (618)
||||++++++|..+++.|+..+|+.+++=+||||....+.++....+.+|..+.+..............++..+...+|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876666555667788888999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh---cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlD 408 (618)
..+.+++... ..+++|||++|...+++.+..|.. ...+..+||.|.+..|..+++.|.+-...+|+|||++++|||
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999998874 567999999999999999998854 467899999999999999999999988899999999999999
Q ss_pred CCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 409 i~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
||++++||+||+|.++..|+||+||++|.|+.|.+++|..+.+..+++-+
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 99999999999999999999999999999999999999999776655544
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-56 Score=415.65 Aligned_cols=372 Identities=34% Similarity=0.534 Sum_probs=330.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
...+|+.+++++++.+.|+..++..|||+|..+||.|+.++|+|-+|.||||||++|.+|+++.+.++ ..+..+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFa 78 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFA 78 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceE
Confidence 34579999999999999999999999999999999999999999999999999999999999998662 236689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc----CCCCCCcceEE
Q 007085 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVV 250 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~~~~vV 250 (618)
||++||++||.|+.++|..+.. .+++.+++++...-.+...+...+||||+||++|.+++... ...+.+++++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 9999999999999999987664 56788899999988888889999999999999999888764 24578899999
Q ss_pred EccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcc
Q 007085 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (618)
+|||+++++..|...++.+.+.+|..+|.++||||+.+.+..+...-...+............+.....+.++.++.+.+
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999999999999999999999888776555444333333333445556667777788888888
Q ss_pred hHHHHHHHHHhhc--CCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 007085 331 PSIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 331 ~~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gl 407 (618)
...+..++..... ...++||+++..+|+.|+..|.. ++.+..+|+.|++.+|-..+.+|+++..+||||||++++|+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 8889888887654 77899999999999999999976 48899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCcccc
Q 007085 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 408 Di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
|||.++.|||+|.|.++.+|+||+||+.|+|+.|.++.++++.|.+.+..|++..++++.+++....
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~ 385 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQR 385 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999999888766443
No 19
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-56 Score=437.24 Aligned_cols=382 Identities=29% Similarity=0.501 Sum_probs=336.8
Q ss_pred hHHhhhhhcccccc-ccCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 75 IAWQHAQSAVDDYV-AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..|+.....+.+.. .+..........|.+++++...++.|+...|..+|.+|+.+||..+.++|+|-.+.||||||++|
T Consensus 44 ~~~~~Eee~i~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAF 123 (758)
T KOG0343|consen 44 KLRQQEEEEIEELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAF 123 (758)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeee
Confidence 34554433332222 23333445666799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC--CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHH
Q 007085 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231 (618)
Q Consensus 154 l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 231 (618)
++|+++.+.+ .++....+.-+|||.|||+||.|+++.+.+.. ..+...++.|+.........+ ..++||||||++
T Consensus 124 lvPvlE~L~r--~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGR 200 (758)
T KOG0343|consen 124 LVPVLEALYR--LKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGR 200 (758)
T ss_pred hHHHHHHHHH--cCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHH
Confidence 9999999865 55666778889999999999999999999865 356677888988876665554 458999999999
Q ss_pred HHHHHHhc-CCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCC
Q 007085 232 VIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310 (618)
Q Consensus 232 l~~~l~~~-~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~ 310 (618)
|+.++... .+...++.++|+||||++++++|..++..|++.+|+.+|+++||||....+..++...+.+|..+.+....
T Consensus 201 LLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a 280 (758)
T KOG0343|consen 201 LLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA 280 (758)
T ss_pred HHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc
Confidence 99988764 57788999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh---cCCeeeecCcCCHHHHHHHHH
Q 007085 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLS 387 (618)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~ 387 (618)
.......+.++++.+....|.+.|...|+.+. ..+.|||+.+.+++..+++.+++ .+++..+||.|++..|.+++.
T Consensus 281 ~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~ 359 (758)
T KOG0343|consen 281 VAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYK 359 (758)
T ss_pred cccChhhhhheEEEEehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHH
Confidence 77788888999999999999999999999884 46899999999999999999876 478999999999999999999
Q ss_pred HHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH-HHHHHHHH
Q 007085 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA-RQVKSIER 460 (618)
Q Consensus 388 ~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~l~~ 460 (618)
.|...+..||+||+++++|||+|.|++||++|+|.++++|+||+||+.|....|.++++.++.+. ..+..|++
T Consensus 360 ~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 360 KFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred HHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999884 44444544
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.2e-54 Score=455.38 Aligned_cols=363 Identities=34% Similarity=0.607 Sum_probs=315.3
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+|+++++++.+++.|+..+|..|+++|.++|+.++.++|+|+++|||+|||++|++|++..+...... ....+++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEE
Confidence 68899999999999999999999999999999999999999999999999999999999998753221 1235689999
Q ss_pred cCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
+||++|+.|+++.+..+.. .+.+..++++.....+...+...++|||+||++|++++....+.+.++++|||||||++
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999888754 46778888998888888878888999999999999999988888999999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeeCch-HHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEec-cCCcchHHHH
Q 007085 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIG 335 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 335 (618)
++++|...+..+...++...|+++||||++. .+..+...++.++..+..... ......+.++.... ....+..++.
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999989999999999985 577777778888877765322 22223344443333 3455667777
Q ss_pred HHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccE
Q 007085 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~ 414 (618)
.+++.. ...++||||++++.++.+++.|.+ .+.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 238 ~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 776542 456899999999999999999976 488999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcc
Q 007085 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
||+||+|.++..|+||+||+||.|..|.+++++...|...+..+++.+...+.
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999888776543
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-56 Score=441.92 Aligned_cols=375 Identities=36% Similarity=0.611 Sum_probs=328.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC----CCCCC
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG----RGRNP 174 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~----~~~~~ 174 (618)
..|....+.+.+..+++..++..|||+|+.+||.+..+++++++|+||||||.+|++|++..+++...... ....+
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 36777888999999999999999999999999999999999999999999999999999999988544322 11358
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
.+||++||++|+.|++++..++.. .++++.++++.+...+.+.+..+|+|+||||++|.++++...+.+.+++++|+|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 999999999999999999998764 567888999999999999999999999999999999999999999999999999
Q ss_pred cchhccC-CCcHHHHHHHHHHCCC----CCcEEEEEeeCchHHHHHHHHhcCCC-cEEEeccCCcccccCCeEEEEEecc
Q 007085 253 EADQMLS-VGFAEDVEVILERLPQ----NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 253 EaH~~~~-~~~~~~~~~il~~l~~----~~~~l~lSAT~~~~~~~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
|||+|++ ++|.+++++|+..... +.|.++||||.|+.+..++..++.+. ..+.+ ... ......+.+....+.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV-~rv-g~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAV-GRV-GSTSENITQKILFVN 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEE-eee-ccccccceeEeeeec
Confidence 9999999 9999999999998753 78999999999999999998888874 33332 222 222334444444455
Q ss_pred CCcchHHHHHHHHHhh---cC-----CcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEE
Q 007085 327 MYEKPSIIGQLITEHA---KG-----GKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (618)
Q Consensus 327 ~~~~~~~l~~~l~~~~---~~-----~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vL 397 (618)
..+|...+.+++.... .. ++++|||.+++.++.++.+|... +++..+|+..++.+|.+.++.|+.|++.+|
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 5566666666666443 23 38999999999999999999764 999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccccc
Q 007085 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 398 VaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
|||+++++|||+|+|+|||+||+|.+..+|+|||||+||.|+.|.++.|++..+....+.|.+.|...-+.+|.|+.+
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 999999999999999999999999999999999999999999999999999888889999999999888889988876
No 22
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-55 Score=431.53 Aligned_cols=360 Identities=34% Similarity=0.548 Sum_probs=314.5
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
..+|.++.|+..+++++...+|..|||+|..+||..+-++|++.++.||||||.+|++|+|+.++-.+.+ ....+||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEE
Confidence 3468899999999999999999999999999999999999999999999999999999999998763322 2345899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCcceEEEccc
Q 007085 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEA 254 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vViDEa 254 (618)
|||||++|+.|++...+++.. .+.+.+..|+-+...+...+...++|||+||++|.+++.+ ..+.+.++.++|+|||
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 999999999999998887653 5777888999999999999999999999999999999976 4578999999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEe-ccCCcchHH
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 333 (618)
|+|++.+|..++.+|+..++.++|.++||||+...+..++...+..|..+-+.+..........+++.+. .....+..+
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999866443322222222222222 233345566
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
+..++.... ..+++||+.+++.|..+.-.|. -.+++.-+||.++|.+|-+.++.|++.+++|||||+++++||||+.+
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 666666554 4589999999999999987774 35889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHH
Q 007085 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERD 461 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 461 (618)
.+||||++|.+.+.|+||+||+.|+|+.|.+++|+.+.+...++.+.+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988887765
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=8.9e-57 Score=426.22 Aligned_cols=383 Identities=32% Similarity=0.556 Sum_probs=327.8
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc--
Q 007085 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-- 168 (618)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~-- 168 (618)
-+..+.+..+|.++.++..+++.|+++++.+|||+|.+.+|.+++++|+|-++-||||||++|++|++...+...-..
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 345566888999999999999999999999999999999999999999999999999999999999887766544333
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHHHhC--------CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC
Q 007085 169 GRGRNPLCLVLAPTRELAKQVEKEFHESA--------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 169 ~~~~~~~~lil~Pt~~La~q~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~ 240 (618)
.++.+|..|||||+++||.|.++.+..++ |.++..++.|+.+...+.+.+..+++|+|+||++|.+++....
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh
Confidence 34568999999999999999998877654 4667788899999999999999999999999999999999999
Q ss_pred CCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEE
Q 007085 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320 (618)
Q Consensus 241 ~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 320 (618)
+++.-+.++++||||+|.+++|...++.++..++..+|+++||||+|..+..++...+-.|..+++-......+ +.+..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsl-dViQe 400 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASL-DVIQE 400 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccch-hHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997633222111 11110
Q ss_pred EEEeccCCcchHHHHHHHHHhhc-CCcEEEEecchhHHHHHHHHH-HhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEE
Q 007085 321 YSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (618)
Q Consensus 321 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLV 398 (618)
. ..+..+.| +..+++++.+ .-++||||..+..++.+.++| .+.+.+..|||+.++++|...++.|+.|+.+|||
T Consensus 401 v-EyVkqEaK---iVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 401 V-EYVKQEAK---IVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLV 476 (610)
T ss_pred H-HHHHhhhh---hhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEE
Confidence 0 11122223 3344444433 458999999999999999988 5679999999999999999999999999999999
Q ss_pred EcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh-hHHHHHHHHHHhcCCcccCCcccccCC
Q 007085 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRIAVEGG 477 (618)
Q Consensus 399 aT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~ 477 (618)
||++++.|+|+|++.||||||+|..++.|+|||||+||.|++|.+.+|++.. +...+..++.+|...-+.+|..+..-.
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~ 556 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELA 556 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999865 455677788888777777877665544
Q ss_pred C
Q 007085 478 G 478 (618)
Q Consensus 478 ~ 478 (618)
+
T Consensus 557 ~ 557 (610)
T KOG0341|consen 557 G 557 (610)
T ss_pred C
Confidence 3
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.2e-53 Score=450.29 Aligned_cols=368 Identities=32% Similarity=0.568 Sum_probs=314.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC-CCCCCe
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG-RGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~-~~~~~~ 175 (618)
....|.++.+++.++++|.+.+|..|+++|.++|+.+++++|+|++++||||||++|++|++..+.+...... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 3456888999999999999999999999999999999999999999999999999999999999876322111 112468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
+|||+||++|+.|+++.++.+.. ++.+..++++.....+.+.+. ..++|||+||++|+.++.+....+.++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999988764 456777788877666666554 458999999999999888888889999999999
Q ss_pred cchhccCCCcHHHHHHHHHHCCC--CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcc
Q 007085 253 EADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (618)
|+|++++++|...+..++..++. +.|++++|||++..+..+...++.++..+.+.... .....+...........+
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVAGSDK 322 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEecchhH
Confidence 99999999999999999998864 57999999999999999999999888777653322 122233344444455567
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi 409 (618)
...+..++... ...++||||++++.++.+++.|.+. +.+..+|+++++++|.++++.|++|+++|||||+++++|||+
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 77777777653 3468999999999999999999654 889999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcc
Q 007085 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
+++++||++++|.++.+|+||+||+||.|++|.+++|+.+.|...+..+++.++..+.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999988889999999887763
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-53 Score=412.11 Aligned_cols=365 Identities=28% Similarity=0.451 Sum_probs=326.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
.+|+++++++.+++++.+.+|..||-+|..+||.++.++|++..|.||||||.+|++|+++.+++.........++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999999998666545556889999
Q ss_pred EcCcHHHHHHHHHHHHHhC---C-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC-CCCCCcceEEEcc
Q 007085 179 LAPTRELAKQVEKEFHESA---P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLDE 253 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vViDE 253 (618)
++||+|||+|++..+.++. + .++++-+..+.+.......+...++|||+||..++.++.... ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999887653 3 455555665666666667777889999999999999998876 5688899999999
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHH
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (618)
||.++..++.+.+..+...+|+..|.++||||+.+++..+...++.+|..+.+.+.... ..+.+.++.+.++..+|..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~-~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELP-NPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCC-CcccceEEEEEeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999887655443 66788999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----------
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD----------- 401 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~----------- 401 (618)
+..+++..--.+++|||+++++.|.+|.-+|.+. ++.+++.+.++...|..|+++|+.|-+++|||||
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 9998887666789999999999999999999764 8889999999999999999999999999999999
Q ss_pred ------------------------ccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHH
Q 007085 402 ------------------------VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457 (618)
Q Consensus 402 ------------------------~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 457 (618)
-+.+|||+.+|.+|||||+|.+...|+||+||++|++++|.++.|+.+.+..-...
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 24689999999999999999999999999999999999999999999998875555
Q ss_pred HHHHhcC
Q 007085 458 IERDVGC 464 (618)
Q Consensus 458 l~~~l~~ 464 (618)
+++.+..
T Consensus 418 le~~~~d 424 (569)
T KOG0346|consen 418 LESILKD 424 (569)
T ss_pred HHHHHhh
Confidence 5554443
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-53 Score=419.28 Aligned_cols=366 Identities=30% Similarity=0.510 Sum_probs=308.7
Q ss_pred CCCCccCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 97 EGLDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
....|..+++++.+.+.|+. +++..||.+|+++||.++.++|++|.++||||||++|++|+++.+.+...+..+..++.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 34568899999999999965 79999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCC---CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCcceEEE
Q 007085 176 CLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vVi 251 (618)
+|||+||||||.|+|+.++++... +....+.|+...+.+...+..+++|||+||++|.+++.+. .+.+..+..||+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999999999999999987653 4456688999988888899999999999999999999874 467888999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCC-------------CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcc------
Q 007085 252 DEADQMLSVGFAEDVEVILERLP-------------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ------ 312 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~-------------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~------ 312 (618)
||+|++++.+|...+..|++.+. ...|.+++|||+.+.+..+....+.||..|.+......
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999988872 23678999999999999999999999988872211110
Q ss_pred -----------------cccCCeEEEEEeccCCcchHHHHHHHHHh---hcCCcEEEEecchhHHHHHHHHHHh------
Q 007085 313 -----------------KLADGISLYSIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK------ 366 (618)
Q Consensus 313 -----------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~------ 366 (618)
.+.....+.+..++..-+.-.|..++.++ .+..++|||+.+.+.++.-++.|..
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 11111222333334333444444444432 2356899999999999988887754
Q ss_pred -----------------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHH
Q 007085 367 -----------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVH 429 (618)
Q Consensus 367 -----------------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Q 429 (618)
..++..+||.|.+++|..++..|...+..||+|||++++|||+|+|.+||.||+|.++++|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 234667899999999999999999998889999999999999999999999999999999999
Q ss_pred HhccCCCCCCcceEEEEechhhHHHHHHHHHHh
Q 007085 430 RTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462 (618)
Q Consensus 430 r~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 462 (618)
|+||+.|+|.+|.+++|..|.+.+++..++...
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 999999999999999999999998877776544
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-51 Score=434.42 Aligned_cols=363 Identities=35% Similarity=0.579 Sum_probs=309.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
..|+++++++.+.+.|.+.++..|+|+|.++|+.++.++|+++++|||||||++|++|++..+.. .....++||
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~li 101 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQALI 101 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEEE
Confidence 46889999999999999999999999999999999999999999999999999999999987642 123568999
Q ss_pred EcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 179 LAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
|+|+++|+.|+.+.+..+... ..+..+.++.........+...++|+|+||++|.+.+....+.+.++++|||||+|+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 999999999999998887643 345556777777777777777889999999999999988888899999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccC-CcchHHHH
Q 007085 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YEKPSIIG 335 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 335 (618)
+.+.++...+..++..++++.|++++|||+++.+..+...++.++..+...... .....+..+...... ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE--LTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC--cccCCceEEEEecChHHHHHHHHH
Confidence 999888889999999999999999999999999888888888887766442221 112233333333322 23444455
Q ss_pred HHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccE
Q 007085 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~ 414 (618)
.+++.. ...++||||++++.++.+++.|.+. +.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 555433 3468999999999999999999764 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCC
Q 007085 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
||++++|.+..+|+||+||+||.++.|.|++++++.+...++.+++.+...+++++
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999999998887776654
No 28
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-52 Score=443.00 Aligned_cols=389 Identities=36% Similarity=0.611 Sum_probs=346.7
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCC
Q 007085 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (618)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~ 171 (618)
...+.+...|.+.+++..++..+++.++.++||+|.+|||+|+.++++|.++.||||||++|++|++.+++.... ...+
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~-~~~g 436 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP-LEEG 436 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC-hhhC
Confidence 345678888999999999999999999999999999999999999999999999999999999999987765433 3345
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC---CCCCCc
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEV 246 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~~~~~ 246 (618)
.+|.+|||+||++|+.|+++++.+++. .+++++++++....+++..+++++.|+||||+++++.+-... ..+.++
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccc
Confidence 699999999999999999999998764 577899999999999999999999999999999998886543 345666
Q ss_pred ceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc
Q 007085 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
.+||+||||+|++++|.+++..|+..+++.+|++++|||+|..+..++...+..|..+.+. ....+...+.+....+.
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCA 594 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEec
Confidence 6999999999999999999999999999999999999999999999999999988886543 44455666776666666
Q ss_pred -CCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccc
Q 007085 327 -MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 327 -~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
..+|...|.++|.+.....++||||...+.|+.+.+.|.+ .+.|..+||+.++.+|..+++.|+++.+.+||||++++
T Consensus 595 ~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvva 674 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVA 674 (997)
T ss_pred CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhh
Confidence 8889999999999988899999999999999999999976 49999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCcccccCCCccccc
Q 007085 405 RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVEGGGDMYND 483 (618)
Q Consensus 405 ~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 483 (618)
+|+|++++..||+||+|...++|+||.||++|+|++|.|++|..+.+......|.+++...-++.|..+.....++...
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~ 753 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAK 753 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999777777776555544444443
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-51 Score=403.77 Aligned_cols=374 Identities=35% Similarity=0.559 Sum_probs=301.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhh-----hcC
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNE-----KHG 169 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~-----~~~ 169 (618)
.....|..+.++.+++++|...+|..||++|..+||++..+ .|+|-.|+||||||++|-+||++.+..... ...
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34445888999999999999999999999999999999998 799999999999999999999995443110 011
Q ss_pred CCCCC--eEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC---C
Q 007085 170 RGRNP--LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---N 242 (618)
Q Consensus 170 ~~~~~--~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~---~ 242 (618)
....+ .+||++|||+||.|+.+.+...++ .+.+..++|+.....+.+.++..++|||+||++|+.++..... .
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 11233 599999999999999999988764 6788899999999999999999999999999999999987654 5
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCC-----CCCcEEEEEeeCchH---------------------HHHHHHH
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPW---------------------IRSLTNK 296 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-----~~~~~l~lSAT~~~~---------------------~~~~~~~ 296 (618)
+.+++++|+||+|+|+..++...+..++..+. ..+|.++||||++-. +..++..
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 77889999999999999999999999988875 467999999998521 1112221
Q ss_pred --hcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeee
Q 007085 297 --YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPL 373 (618)
Q Consensus 297 --~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~l 373 (618)
+...|..+.+... ..+...+..-.+.|...+|.-.+..++.. -++++|||||+++.+.+|+-+|..- ++...+
T Consensus 418 ig~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~L 493 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPL 493 (731)
T ss_pred hCccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCchh
Confidence 2334555544221 12222222222333444444444444333 2569999999999999999999764 888899
Q ss_pred cCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
|+.|.+.+|-+.++.|++....||||||+++||||||.|+|||||-.|.+.+.|+||.||+.|++..|..++++.|.+..
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccCCcccc
Q 007085 454 QVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 454 ~~~~l~~~l~~~~~~~~~~~~ 474 (618)
.+..|++.|+.. +++|-+.+
T Consensus 574 ~~~KL~ktL~k~-~dlpifPv 593 (731)
T KOG0347|consen 574 PLKKLCKTLKKK-EDLPIFPV 593 (731)
T ss_pred HHHHHHHHHhhc-cCCCceec
Confidence 999999988754 33444444
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.5e-48 Score=429.44 Aligned_cols=348 Identities=22% Similarity=0.322 Sum_probs=270.8
Q ss_pred CCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007085 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
.+++++.++|++.++.+|+++|.++|+.+++++|+++++|||||||++|++|+++.+.+ ....++|||+||++
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHH
Confidence 47899999999999999999999999999999999999999999999999999999865 12578999999999
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc----CCCCCCcceEEEccchhccC
Q 007085 185 LAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 185 La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~~~~vViDEaH~~~~ 259 (618)
|++|+++.++++.. .+++..+.|+.+. .+...+...++|||+||++|...+... ...+.++++|||||+|+|.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999999998752 4556666666654 444556667899999999997533221 12378899999999999976
Q ss_pred CCcHHHHHHHHHHC-------CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc------
Q 007085 260 VGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS------ 326 (618)
Q Consensus 260 ~~~~~~~~~il~~l-------~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~------ 326 (618)
. |...+..++.++ +.++|++++|||+++... +...++..+..+ +..+.. .............
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~--~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGS--PRGARTVALWEPPLTELTG 246 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCC--CcCceEEEEecCCcccccc
Confidence 4 776666655543 467899999999998755 455666666433 211111 1111111111111
Q ss_pred ----------CCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh---------cCCeeeecCcCCHHHHHHHHH
Q 007085 327 ----------MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---------SYNCEPLHGDISQSQRERTLS 387 (618)
Q Consensus 327 ----------~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~r~~i~~ 387 (618)
...+..++..+++ .+.++||||++++.++.++..|.+ ..++..+|+++++++|+++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 0122333444443 467999999999999999998765 246789999999999999999
Q ss_pred HHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEec--hhhHHHHHHHHHHhcCC
Q 007085 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT--DQQARQVKSIERDVGCR 465 (618)
Q Consensus 388 ~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~--~~~~~~~~~l~~~l~~~ 465 (618)
.|++|++++||||+++++||||+++++||+++.|.+.++|+||+||+||.|+.+.++++.. +.|...+..+++.++..
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999986 34555566666666655
Q ss_pred ccc
Q 007085 466 FTQ 468 (618)
Q Consensus 466 ~~~ 468 (618)
++.
T Consensus 404 ~e~ 406 (742)
T TIGR03817 404 VEA 406 (742)
T ss_pred Ccc
Confidence 443
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-49 Score=374.66 Aligned_cols=362 Identities=34% Similarity=0.603 Sum_probs=324.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+|++++|.++|++.++..+|++|+.+|+.||..+.++.|+++++++|+|||.+|.++++..+.. .....+++++
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qalil 100 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALIL 100 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999999988733 1225679999
Q ss_pred cCcHHHHHHHHHHHHHhCCCC--ceEEEEcCCchHHHHHHh-hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 180 APTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
+|+++|+.|..+....++... .+..+.++.+.......+ ...++|+|+||+++.+.+....+....+++.|+||++.
T Consensus 101 aPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred cchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 999999999998888776544 455567777766444444 44589999999999999998888888899999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHH
Q 007085 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 336 (618)
++..+|.+++..++..++++.|++++|||.|+++......++.+|..+....+. .....+.+++......+|...+..
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeeeeeeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999998764433 445566677777777778888888
Q ss_pred HHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEE
Q 007085 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415 (618)
Q Consensus 337 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~V 415 (618)
+.. .-.+.+|||++++.++.+...|... +.+..+|++|.+.+|..++..|+.|..+|||.|+.+++|+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 887 3458899999999999999999554 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCcc
Q 007085 416 IHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 416 I~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
|+|++|.+.+.|+||+||+||.|.+|.++.++...+...++.++++++..++++|..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999999999888763
No 32
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.5e-48 Score=426.11 Aligned_cols=377 Identities=18% Similarity=0.266 Sum_probs=286.5
Q ss_pred cCCCCCCCCCccccccCCccccccccccCCcCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCCHHHHHHHHHcC
Q 007085 39 KSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRG 118 (618)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 118 (618)
....+++...|++.+|+|.+.+.++.+++++.|+|+...|............... . .+.....+.+.+....
T Consensus 187 ~~~~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~l 258 (681)
T PRK10917 187 EKYGLLSLAEALRAIHFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRSKKA---G-----PLPYDGELLKKFLASL 258 (681)
T ss_pred HhcCCCCHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C-----CCCCChHHHHHHHHhC
Confidence 3345778899999999999999999999999999999988665332222111110 0 1223456777776666
Q ss_pred CCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHH
Q 007085 119 ISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (618)
.++||++|+++++.|.++ +++|++++||||||++|++|++..+.+ +.+++||+||++||.|+++.
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEeccHHHHHHHHHH
Confidence 667999999999999886 479999999999999999999988744 78999999999999999999
Q ss_pred HHHhCCC--CceEEEEcCCchHHHHHH---hhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHH
Q 007085 193 FHESAPS--LDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 193 l~~~~~~--~~~~~~~~~~~~~~~~~~---~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
++++++. +.+.+++++.+...+... +.. .++|+|+||+.+.+ .+.+.++++|||||+|++ ....
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrf-----g~~q 399 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRF-----GVEQ 399 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhh-----hHHH
Confidence 9998864 677888888876554433 333 59999999987754 345789999999999995 3444
Q ss_pred HHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCc
Q 007085 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 346 (618)
...+......+++|+|||||.+....+......+...+... .. ....+.... .....+..++..+.+...++.+
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~---p~-~r~~i~~~~--~~~~~~~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL---PP-GRKPITTVV--IPDSRRDEVYERIREEIAKGRQ 473 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC---CC-CCCCcEEEE--eCcccHHHHHHHHHHHHHcCCc
Confidence 55555556678999999999886554443222222222211 11 011222222 2223334444555555567889
Q ss_pred EEEEecchh--------HHHHHHHHHHhc---CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEE
Q 007085 347 CIVFTQTKR--------DADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415 (618)
Q Consensus 347 ~lVf~~~~~--------~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~V 415 (618)
++|||+.++ .++.+++.|.+. +++..+||+|++++|++++++|++|+.+|||||+++++|||+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 999999654 455667777654 579999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC-ChhHHHHHhccCCCCCCcceEEEEec
Q 007085 416 IHYELPN-TSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 416 I~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|++++|. ...+|+|++||+||.+.+++|++++.
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999997 68999999999999999999999995
No 33
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3e-48 Score=400.33 Aligned_cols=377 Identities=19% Similarity=0.277 Sum_probs=305.6
Q ss_pred CCCCCCCccccccCCccccccccccCCcCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCCHHHHHHHHHcCCCC
Q 007085 42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISK 121 (618)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 121 (618)
.+++...+++.+|+|++...+..+++++.|+++...|.............. ...++...++++.+....+++
T Consensus 191 ~l~~~~~al~~lH~P~~~~~~~~~~rRL~f~Ell~~ql~l~~~r~~~~~~~--------~~~~~~~~~l~~~~~~~LPF~ 262 (677)
T COG1200 191 GLPSLDEALRTLHFPKDEEDLKRARRRLAFEELLALQLSLLLRRAKRQKRS--------GIPLPANGELLAKFLAALPFK 262 (677)
T ss_pred cCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------CCCCCccHHHHHHHHHhCCCC
Confidence 355678999999999999999999999999999998877653222222211 124566777888888888888
Q ss_pred ChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 122 LFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
||..|++++..|..+ ++.|+++++|||||++++++++..+.+ +.++.+++||..||+|+++.+.+
T Consensus 263 LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 263 LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeEEeccHHHHHHHHHHHHHH
Confidence 999999999999876 568999999999999999999999866 89999999999999999999999
Q ss_pred hCC--CCceEEEEcCCchHHHHHHhh---c-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHH
Q 007085 196 SAP--SLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 196 ~~~--~~~~~~~~~~~~~~~~~~~~~---~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+++ ++++..++|......+...+. . ..+|||+|+..+. +.+.+.++.+||+||.|| |+...+..
T Consensus 334 ~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQHR-----FGV~QR~~ 403 (677)
T COG1200 334 WLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQHR-----FGVHQRLA 403 (677)
T ss_pred HhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEecccc-----ccHHHHHH
Confidence 997 566788888877666554443 3 4999999965554 456799999999999999 77777777
Q ss_pred HHHCCC-CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEE
Q 007085 270 LERLPQ-NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (618)
Q Consensus 270 l~~l~~-~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 348 (618)
+..... .+++|+|||||.|.+..+ ..+.+.....+ +.......+..........+..++..+.++..++++++
T Consensus 404 L~~KG~~~Ph~LvMTATPIPRTLAl--t~fgDldvS~I----dElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY 477 (677)
T COG1200 404 LREKGEQNPHVLVMTATPIPRTLAL--TAFGDLDVSII----DELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAY 477 (677)
T ss_pred HHHhCCCCCcEEEEeCCCchHHHHH--HHhccccchhh----ccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEE
Confidence 777777 799999999999965544 44444333322 11122223333344445666777888888888999999
Q ss_pred EEecchhHHH--------HHHHHHHh---cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE
Q 007085 349 VFTQTKRDAD--------RLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 349 Vf~~~~~~~~--------~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~ 417 (618)
|+|+-+++.+ .+++.|.. .+++..+||+|+.++++++|.+|++|+++|||||.++|+|||+|+++++|+
T Consensus 478 ~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 478 VVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred EEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 9999887665 44555553 356899999999999999999999999999999999999999999999999
Q ss_pred cCCCC-ChhHHHHHhccCCCCCCcceEEEEechhh
Q 007085 418 YELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 418 ~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
.++.+ .+++++|.+||+||...+++|++++.+..
T Consensus 558 e~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 558 ENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred echhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99988 99999999999999999999999998776
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.7e-47 Score=419.05 Aligned_cols=401 Identities=21% Similarity=0.236 Sum_probs=288.0
Q ss_pred hhhhHHHHhhhcch--hhHHhhhhhhhccCCCCCCCCCccccccCCccccccccccCCcCccchhHHhhhhhcccccccc
Q 007085 13 FLTSKRALTAALTS--VETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAY 90 (618)
Q Consensus 13 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (618)
+...+.+.|+.+.. .++++.. .+....+++...++..+|+|.+.+.++.+++++.|+|+..+|............
T Consensus 135 ~~~~i~~~l~~~~~~~~e~lp~~---~~~~~~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~~~~ 211 (630)
T TIGR00643 135 LRKLIQQALDQLDKSLEDPLPEE---LREKYGLLSLEDALRAIHFPKTLSLLELARRRLIFDEFFYLQLAMLARRLGEKQ 211 (630)
T ss_pred HHHHHHHHHHhccccCCCCCCHH---HHhhcCCCCHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555554322 2333322 234455778899999999999999999999999999999988765322221111
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHH
Q 007085 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKF 164 (618)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~ 164 (618)
.. ... .+.....+.+.+.+...++||++|+++++.|+++ +++|++++||||||++|++|++..+.+
T Consensus 212 ~~--~~~-----~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~- 283 (630)
T TIGR00643 212 QF--SAP-----PANPSEELLTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA- 283 (630)
T ss_pred hc--CCC-----CCCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-
Confidence 10 000 1223334544454444447999999999999876 368999999999999999999988754
Q ss_pred hhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHh---h-cCCCEEEEChHHHHHHHHh
Q 007085 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKR 238 (618)
Q Consensus 165 ~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~ 238 (618)
+.+++|++||++||.|+++.+++++. ++++.+++++.....+...+ . ..++|||+||..+.+
T Consensus 284 --------g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~---- 351 (630)
T TIGR00643 284 --------GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE---- 351 (630)
T ss_pred --------CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----
Confidence 67899999999999999999999886 47788888888766543332 2 358999999988754
Q ss_pred cCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC--CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccC
Q 007085 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316 (618)
Q Consensus 239 ~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~--~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 316 (618)
.+.+.++++|||||+|++.. .+...+..... ..+++|+|||||++....+......+...+.... . ...
T Consensus 352 -~~~~~~l~lvVIDEaH~fg~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p---~-~r~ 422 (630)
T TIGR00643 352 -KVEFKRLALVIIDEQHRFGV----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELP---P-GRK 422 (630)
T ss_pred -cccccccceEEEechhhccH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC---C-CCC
Confidence 34578999999999999632 22233333332 2689999999998755443321111111121111 0 011
Q ss_pred CeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchh--------HHHHHHHHHHh---cCCeeeecCcCCHHHHHHH
Q 007085 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR--------DADRLAHAMAK---SYNCEPLHGDISQSQRERT 385 (618)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~--------~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i 385 (618)
.+.... .....+...+..+.+...++.+++|||+.++ .++.+++.|.+ .+.+..+||+|++++|+++
T Consensus 423 ~i~~~~--~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i 500 (630)
T TIGR00643 423 PITTVL--IKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAV 500 (630)
T ss_pred ceEEEE--eCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHH
Confidence 222222 2222334445555555567789999999763 45667777764 3679999999999999999
Q ss_pred HHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcceEEEEe
Q 007085 386 LSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 386 ~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
++.|++|+.+|||||+++++|||+|++++||++++|. +..+|+|++||+||.++++.|++++
T Consensus 501 ~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 501 MEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999997 7899999999999999999999999
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8e-47 Score=413.23 Aligned_cols=339 Identities=21% Similarity=0.312 Sum_probs=262.8
Q ss_pred CCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 103 ~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
.+++...+...+++ +++..|+|+|.++|+.++.++|+|+++|||+|||++|++|++.. ...+|||+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISP 508 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 508 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeC
Confidence 46677778777755 78999999999999999999999999999999999999999853 457999999
Q ss_pred cHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh------cCCCEEEEChHHHHH--HHHhc---CCCCCCcceEE
Q 007085 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVID--LIKRN---ALNLSEVQFVV 250 (618)
Q Consensus 182 t~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ilv~T~~~l~~--~l~~~---~~~~~~~~~vV 250 (618)
+++|+.++...+... .+....+.++.....+...+. ..++|||+||++|.. .+.+. ......+.+||
T Consensus 509 LiSLmqDQV~~L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999999777777664 577777888877665554443 358999999999852 12211 11234588999
Q ss_pred EccchhccCCC--cHHHHHHH--HHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc
Q 007085 251 LDEADQMLSVG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 251 iDEaH~~~~~~--~~~~~~~i--l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
|||||++++|+ |.+.+..+ +....+..++++||||+++.+...+...+.-...+.+..... ...+ .+.+...
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~---RpNL-~y~Vv~k 662 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN---RPNL-WYSVVPK 662 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC---ccce-EEEEecc
Confidence 99999999986 66666543 344446788999999999988887666554322221111111 1111 1222222
Q ss_pred CCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcccc
Q 007085 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 327 ~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
.......+..++.......+.||||.++++++.+++.|.+ .+.+..+|++|++++|..+++.|.+++++|||||+++++
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 1112334445554443456899999999999999999965 489999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHH
Q 007085 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (618)
Q Consensus 406 GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 459 (618)
|||+|+|++||||++|.+++.|+|++|||||.|.++.|++|+...|...++.+.
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988877666654
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-47 Score=361.30 Aligned_cols=371 Identities=30% Similarity=0.472 Sum_probs=303.8
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhc
Q 007085 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168 (618)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~ 168 (618)
.+++-.....|+++.|.+++++.++.++|..|+.+|..|+|.++.. +|+|.++..|+|||.+|.+.||.++..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~----- 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP----- 156 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-----
Confidence 3444456678999999999999999999999999999999999986 789999999999999999999988743
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCcc
Q 007085 169 GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQ 247 (618)
Q Consensus 169 ~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~ 247 (618)
.-..|++++|+||++||.|..+.+.++.....+..-+.-... ...+--.-..+|+|+||+.+.+++.. ..+.+..++
T Consensus 157 -~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~s-k~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 157 -DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGS-KAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred -cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCc-ccccCCcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 223678999999999999999999988754433222211110 01111111258999999999999987 677889999
Q ss_pred eEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEE-ec
Q 007085 248 FVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-AT 325 (618)
Q Consensus 248 ~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 325 (618)
++|+|||+.|++. +|.++-..|...++++.|+|++|||....+..++..++.++..+.+.. .+ .....+.++++ ..
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~-ee-l~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKR-EE-LALDNIKQLYVLCA 312 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeeh-hh-ccccchhhheeecc
Confidence 9999999998876 478888889999999999999999999999999999999998886532 22 23334444444 44
Q ss_pred cCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccc
Q 007085 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 326 ~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
....|.+.+..+.... .-++.||||.+++.+..++..|.. +..+.++||+|..++|..+++.|+.|+.+|||+|++++
T Consensus 313 ~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A 391 (477)
T KOG0332|consen 313 CRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA 391 (477)
T ss_pred chhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh
Confidence 5566777777754433 446899999999999999999965 58999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCC------ChhHHHHHhccCCCCCCcceEEEEechhhH-HHHHHHHHHhcCCcccCCc
Q 007085 405 RGLDVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQA-RQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 405 ~GlDi~~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~ 471 (618)
||||++.+++||+||+|. +.+.|+|||||+||.|++|.++.++...+. ..+..|++.++..+..+..
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999999999999999995 789999999999999999999988876554 5566888888776665443
No 37
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-48 Score=372.35 Aligned_cols=364 Identities=31% Similarity=0.513 Sum_probs=336.3
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
.-.|+.++++..+++++.+.+|..|||+|++.+|.++.+++++-.+-||||||.+|++||++.+.... ..+.+++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ral 94 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRAL 94 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----cccccee
Confidence 45799999999999999999999999999999999999999999999999999999999999987643 2367899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
++.||++|+.|..+.++++.. +++..+++++....++...+..++|||++||++++++.-...+.++.+.+||+||++
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 999999999999999998765 567888999999999999999899999999999998877777889999999999999
Q ss_pred hccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHH
Q 007085 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (618)
+++.++|.+++.+++.+++...|.++||||+|..+..+...-+.+|..+.+ +.+..+.......++.+...+|...|.
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRl--dvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRL--DVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEe--ehhhhcchhhhhheeeeccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 445666677777788888889999999
Q ss_pred HHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccE
Q 007085 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (618)
Q Consensus 336 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~ 414 (618)
.++.......+++|||.+...++.+...|.+. +.+..+.+.|++.-|...+..|..++..+||.|+++.+|+|||-.+.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 99998877789999999999999999999764 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 415 IIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 415 VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
||+||.|.+...|+||+||+.|+|+.|.+|.++.+.+..++..|..++...+..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~ 386 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIF 386 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceee
Confidence 999999999999999999999999999999999999999999999888876554
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.2e-46 Score=394.21 Aligned_cols=324 Identities=21% Similarity=0.365 Sum_probs=250.8
Q ss_pred HcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..++..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+++.+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998743 45799999999999999999987
Q ss_pred hCCCCceEEEEcCCchHHHHHH----hhcCCCEEEEChHHHHHHH-HhcCC-CCCCcceEEEccchhccCCC--cHHHHH
Q 007085 196 SAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLI-KRNAL-NLSEVQFVVLDEADQMLSVG--FAEDVE 267 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l-~~~~~-~~~~~~~vViDEaH~~~~~~--~~~~~~ 267 (618)
. .+....+.+.......... ....++|+++||+++.... ....+ ...++++|||||||++.+|+ |...+.
T Consensus 74 ~--gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 74 S--GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred c--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 5 4566666666655433222 2335899999999985321 11111 46789999999999998876 455544
Q ss_pred HH---HHHCCCCCcEEEEEeeCchHHHHHHHHhcC--CCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhh
Q 007085 268 VI---LERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (618)
Q Consensus 268 ~i---l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 342 (618)
.+ ...+ ++.+++++|||+++.+...+...+. ++..+.. .... ..+. +.+..........+..++....
T Consensus 152 ~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~r----~nl~-~~v~~~~~~~~~~l~~~l~~~~ 224 (470)
T TIGR00614 152 ALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFDR----PNLY-YEVRRKTPKILEDLLRFIRKEF 224 (470)
T ss_pred HHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCCC----CCcE-EEEEeCCccHHHHHHHHHHHhc
Confidence 43 3333 5788999999999987766655542 3333321 1111 1111 1222222223334444444344
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p 421 (618)
++..+||||+++++++.+++.|.+ .+.+..+|++|++++|.++++.|++++++|||||+++++|||+|++++||++++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 566779999999999999999975 4889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHH
Q 007085 422 NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (618)
Q Consensus 422 ~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 460 (618)
.+++.|+||+||+||.|.++.|++++.+.|...++.+..
T Consensus 305 ~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 305 KSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999988876666543
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.5e-47 Score=381.12 Aligned_cols=350 Identities=30% Similarity=0.497 Sum_probs=303.5
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007085 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~ 172 (618)
+......+|+++-+..+++..|+..+|..||++|..|||.++.++|+||++..|+|||++|.+.+++.+.. ...
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~ 92 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSS 92 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccC
Confidence 34455567899999999999999999999999999999999999999999999999999998888877632 334
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (618)
.++++||+|||++|.|+.+.+.++++ ++++.+..|++........++. ++|+|+||++|.++++...++..+++++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEE
Confidence 67899999999999999999998876 5678889999988777666644 6899999999999999999999999999
Q ss_pred EEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEE-eccC
Q 007085 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSM 327 (618)
Q Consensus 250 ViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~ 327 (618)
|+||||.+.+ ..|..++..|+..+|..+|++++|||-|..+.+++..++.+|..+.+-.+... ...+.++.. .+..
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~--L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQ--LFGIKQYVVAKCSP 249 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCce--eechhheeeeccCC
Confidence 9999999988 56999999999999999999999999999999999999999999986443322 222333333 3333
Q ss_pred C-------cchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEE
Q 007085 328 Y-------EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 328 ~-------~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
. .|...|.++++.+ +-.++||||+....|+-++.+|.. ++.|.+|.|.|++.+|..+++.++.-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 2 2444555555544 345899999999999999999965 599999999999999999999999999999999
Q ss_pred cCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 400 T~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
||..++|||-++++.||++|+|.+.+.|.||||||||.|..|.+++|+.....
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999987654
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-46 Score=363.19 Aligned_cols=348 Identities=31% Similarity=0.503 Sum_probs=279.0
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHhC---------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007085 110 IVAALARRGISKLFPIQKAVLEPAMQ---------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 110 l~~~l~~~~~~~l~~~Q~~~i~~i~~---------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (618)
+.+.+.++.+..+.|+|..++|+++. .+|+.|.+|||||||++|.+||++.+.... -+..++|||+
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavViv 222 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVIV 222 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEEe
Confidence 34458889999999999999999853 368999999999999999999999986622 2246899999
Q ss_pred CcHHHHHHHHHHHHHhCCCCc--eEEEEcCCchHHHHHHhhcC-----CCEEEEChHHHHHHHHh-cCCCCCCcceEEEc
Q 007085 181 PTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG-----VDAVVGTPGRVIDLIKR-NALNLSEVQFVVLD 252 (618)
Q Consensus 181 Pt~~La~q~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vViD 252 (618)
||++|+.|+++.|.++.+... +..+.+..+...+.+.+... ++|||+||++|.+++.+ ..+.+++++++|||
T Consensus 223 Ptr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 223 PTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred eHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 999999999999999987544 44455666666666666542 49999999999999984 56889999999999
Q ss_pred cchhccCCCcHHHHHHHHHHCC----------------------------------CCCcEEEEEeeCchHHHHHHHHhc
Q 007085 253 EADQMLSVGFAEDVEVILERLP----------------------------------QNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~----------------------------------~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
||||+++..|...+..++..+. +..+.+++|||+......+...-+
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 9999987765554444443331 122357788888766666666666
Q ss_pred CCCcEEEecc--CCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-----cCCee
Q 007085 299 KNPLTVDLVG--DSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCE 371 (618)
Q Consensus 299 ~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~ 371 (618)
..|....+.. .....+...+....+.++...+...+..++... +..++|+|+++...+.+++..|+- .+++.
T Consensus 383 ~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s 461 (620)
T KOG0350|consen 383 HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVS 461 (620)
T ss_pred CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhh
Confidence 6675443332 122334445566666777777777777777754 567999999999999999998862 35566
Q ss_pred eecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhh
Q 007085 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 372 ~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
.+.|.++...|.+.++.|..|++.||||+|+++||||+.+++.||+||+|.+..+|+||+||++|+|+.|.|+++....+
T Consensus 462 ~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 462 EFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred hhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhc
Q 007085 452 ARQVKSIERDVG 463 (618)
Q Consensus 452 ~~~~~~l~~~l~ 463 (618)
...+.++.+...
T Consensus 542 ~r~F~klL~~~~ 553 (620)
T KOG0350|consen 542 KRLFSKLLKKTN 553 (620)
T ss_pred chHHHHHHHHhc
Confidence 887776655544
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-44 Score=401.03 Aligned_cols=321 Identities=18% Similarity=0.259 Sum_probs=253.7
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
++.+..+.+.+......+||++|.+||+.++++ +|+|++++||+|||.+|++|++..+.+ +++++
T Consensus 434 ~~~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvl 504 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVA 504 (926)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEE
Confidence 445667777776654446999999999999885 789999999999999999999988755 67899
Q ss_pred EEcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHHH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 178 VLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~---~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
||+||++||.|+++.+++++.. +++..+++..+..++.. .+.. .++|||+||..+ ...+.+.++++|||
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVI 579 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLII 579 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEe
Confidence 9999999999999999998764 44556666665444333 2333 589999999533 23466899999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (618)
||+|++ .......+..++.++++|+|||||++.+..+....+.++..+...+.. ...+..+.... ...
T Consensus 580 DEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~----R~~V~t~v~~~---~~~ 647 (926)
T TIGR00580 580 DEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED----RLPVRTFVMEY---DPE 647 (926)
T ss_pred eccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----ccceEEEEEec---CHH
Confidence 999994 455567777788899999999999887766655555566555432111 11222222221 112
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh---cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlD 408 (618)
.+...++.+..++++++|||++++.++.+++.|.+ .+++..+||+|++.+|++++++|++|+++|||||+++++|||
T Consensus 648 ~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GID 727 (926)
T TIGR00580 648 LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGID 727 (926)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccc
Confidence 22334445556788999999999999999999986 467999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 409 VPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 409 i~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
+|++++||++++|. ++.+|+||+||+||.++.|+|++++.+.
T Consensus 728 Ip~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 728 IPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999976 7889999999999999999999998643
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.7e-44 Score=389.10 Aligned_cols=331 Identities=21% Similarity=0.365 Sum_probs=252.5
Q ss_pred CCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 105 DISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 105 ~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+......+.|++ .++..++|+|+++++.++.++|+++.+|||+|||++|++|++.. ...+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 334444555644 69999999999999999999999999999999999999998743 34699999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 184 ~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
+|+.|+.+.+... .+...++.+.......... .....+++++||++|........+...++++|||||||++.+
T Consensus 76 sL~~dqv~~l~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 76 SLMKDQVDQLLAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 9999999999876 4566666666554443322 223579999999999642222234456799999999999998
Q ss_pred CC--cHHHHHH---HHHHCCCCCcEEEEEeeCchHHHHHHHHhc--CCCcEEEeccCCcccccCCeEEEEEeccCCcchH
Q 007085 260 VG--FAEDVEV---ILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 260 ~~--~~~~~~~---il~~l~~~~~~l~lSAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (618)
|+ |.+.+.. +...+ ++.+++++|||+++.+...+...+ .++.... . .... ..+. +.+ .....+..
T Consensus 154 ~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~-~~~r---~nl~-~~v-~~~~~~~~ 225 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S-SFDR---PNIR-YTL-VEKFKPLD 225 (607)
T ss_pred ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-C-CCCC---Ccce-eee-eeccchHH
Confidence 75 4544433 33333 578899999999988766554443 2333221 1 1110 1111 111 11222333
Q ss_pred HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC
Q 007085 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 333 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~ 411 (618)
.+..++... .+.++||||+++++++.+++.|.+. +.+..+|++|++++|.++++.|++++++|||||+++++|||+|+
T Consensus 226 ~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 226 QLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCC
Confidence 344444432 5679999999999999999999764 89999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+++||+|++|.+++.|+||+||+||.|.++.|++++++.|...++.+
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887655544
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-43 Score=400.39 Aligned_cols=337 Identities=20% Similarity=0.344 Sum_probs=251.0
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++.+.+++++ ++..|||+|.++|+.+++++|+|+++|||||||++|++|++..+...........+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777766 68889999999999999999999999999999999999999988753222111336789999999999
Q ss_pred HHHHHHHHHH-------hC-------CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC--CCCCcceE
Q 007085 186 AKQVEKEFHE-------SA-------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFV 249 (618)
Q Consensus 186 a~q~~~~l~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--~~~~~~~v 249 (618)
++|+++.+.+ ++ +.+.+.+.+|+.+...+.+.+...++|+||||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 21 24567788898888888778888899999999999877755432 47889999
Q ss_pred EEccchhccCCCcHHHHHHHHHH----CCCCCcEEEEEeeCchHHHHHHHHhcCC------CcEEEeccCCcccccCCeE
Q 007085 250 VLDEADQMLSVGFAEDVEVILER----LPQNRQSMMFSATMPPWIRSLTNKYLKN------PLTVDLVGDSDQKLADGIS 319 (618)
Q Consensus 250 ViDEaH~~~~~~~~~~~~~il~~----l~~~~~~l~lSAT~~~~~~~~~~~~l~~------~~~i~~~~~~~~~~~~~~~ 319 (618)
||||+|.+.+..+...+..++.+ .++..|+|++|||+++. ..+ ..++.. +..+.++..... ..+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~v-a~~L~~~~~~~~~r~~~iv~~~~~---k~~~ 251 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEV-AKFLVGYEDDGEPRDCEIVDARFV---KPFD 251 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHH-HHHhcCccccCCCCceEEEccCCC---ccce
Confidence 99999999877666665554443 34678999999999863 222 222221 211222111100 0111
Q ss_pred EEEEe-------ccCCcc-hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-------CCeeeecCcCCHHHHHH
Q 007085 320 LYSIA-------TSMYEK-PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-------YNCEPLHGDISQSQRER 384 (618)
Q Consensus 320 ~~~~~-------~~~~~~-~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~r~~ 384 (618)
..... ...... ..+...+.+...+..++||||++++.++.++..|.+. ..+..+|+++++++|..
T Consensus 252 i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ 331 (876)
T PRK13767 252 IKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLE 331 (876)
T ss_pred EEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHH
Confidence 10000 011111 1222223333345679999999999999999999762 56889999999999999
Q ss_pred HHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC-CCcceEEEEec
Q 007085 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA-GKKGSAILIYT 448 (618)
Q Consensus 385 i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~-g~~g~~~~~~~ 448 (618)
+++.|++|+++|||||+++++|||+|++++||+++.|.++..|+||+||+||. +..+.++++..
T Consensus 332 ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 332 VEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999986 44445554444
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-43 Score=395.50 Aligned_cols=333 Identities=25% Similarity=0.396 Sum_probs=257.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
.|+++++++.+++.|++.++.+|+|+|.++++. ++.++|+++++|||||||++|.+|++..+.. +.++||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal~ 72 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKALY 72 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEEE
Confidence 578899999999999999999999999999998 7789999999999999999999999998853 568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
|+|+++|+.|+++.++++.+ ++++..++|+...... .....+|+|+||+++..++.+....+.++++|||||+|.+
T Consensus 73 i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred EeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 99999999999999997643 4667777776553321 1235799999999999888765556789999999999999
Q ss_pred cCCCcHHHHHHHHHHC---CCCCcEEEEEeeCchHHHHHHHHhcCCCc--------EE--EeccCCcccccCCeEEEEEe
Q 007085 258 LSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPL--------TV--DLVGDSDQKLADGISLYSIA 324 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l---~~~~~~l~lSAT~~~~~~~~~~~~l~~~~--------~i--~~~~~~~~~~~~~~~~~~~~ 324 (618)
.+..+...++.++.++ .+..|+|+||||+++. .. +..|+.... .+ .+.......... ... .
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~-la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~--~ 223 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DE-LADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQR--E 223 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HH-HHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccc--c
Confidence 8888888888877665 4678999999999863 22 233332111 10 000000000000 000 0
Q ss_pred ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-------------------------------------
Q 007085 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS------------------------------------- 367 (618)
Q Consensus 325 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------------- 367 (618)
.....+...+..+++....++++||||++++.++.++..|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 0111122333334444446789999999999999888777432
Q ss_pred CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----cC-----CCCChhHHHHHhccCCCCC
Q 007085 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE-----LPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 368 ~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~~-----~p~~~~~~~Qr~GR~gR~g 438 (618)
..+..+|++|++.+|+.+++.|++|.++|||||+++++|||+|..++||+ || .|.+..+|+||+|||||.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 25778899999999999999999999999999999999999999999997 66 5789999999999999987
Q ss_pred Cc--ceEEEEechh
Q 007085 439 KK--GSAILIYTDQ 450 (618)
Q Consensus 439 ~~--g~~~~~~~~~ 450 (618)
.+ |.|++++...
T Consensus 384 ~d~~G~~ii~~~~~ 397 (737)
T PRK02362 384 LDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCceEEEEecCc
Confidence 54 8899988664
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.3e-43 Score=383.01 Aligned_cols=325 Identities=22% Similarity=0.374 Sum_probs=254.7
Q ss_pred HHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 113 ALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 113 ~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
.|++ .++.+++|+|.++|+.++.++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+++
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHH
Confidence 4533 79999999999999999999999999999999999999998743 3468999999999999999
Q ss_pred HHHHhCCCCceEEEEcCCchHHHHHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC--cHHH
Q 007085 192 EFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAED 265 (618)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~--~~~~ 265 (618)
.++.+ .+.+..+++.......... .....+|+++||++|........+...++++|||||||++.+|+ |.+.
T Consensus 72 ~l~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~ 149 (591)
T TIGR01389 72 QLRAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPE 149 (591)
T ss_pred HHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHH
Confidence 99886 4666677777665544332 23458999999999965433334556789999999999998865 5555
Q ss_pred HHHH---HHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhh
Q 007085 266 VEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (618)
Q Consensus 266 ~~~i---l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 342 (618)
+..+ ...++ ..+++++|||+++.+...+...+.-+....+..... ...+ .........+...+..++...
T Consensus 150 y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~nl--~~~v~~~~~~~~~l~~~l~~~- 222 (591)
T TIGR01389 150 YQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFD---RPNL--RFSVVKKNNKQKFLLDYLKKH- 222 (591)
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC---CCCc--EEEEEeCCCHHHHHHHHHHhc-
Confidence 4444 34444 455999999999988877766654222111111111 0111 222222334555566666654
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p 421 (618)
.+.++||||++++.++.+++.|.. .+++..+|++|+.++|+.+++.|.+|+++|||||+++++|||+|++++||++++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 357899999999999999999965 4889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 422 NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 422 ~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
.+++.|+|++||+||.|+++.|++++.+.+...++.+
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999998876655544
No 46
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-44 Score=359.83 Aligned_cols=376 Identities=29% Similarity=0.433 Sum_probs=304.1
Q ss_pred CCCCCCccC----CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007085 95 KDEGLDISK----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 95 ~~~~~~~~~----~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~ 170 (618)
+.+...|.+ ....+.+++.+...+|..|+|+|.+|+|.++...+++.++|||+|||++|++|++.++...... ..
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~-~~ 206 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE-KH 206 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc-cC
Confidence 345555665 4578889999999999999999999999999999999999999999999999999999775431 12
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhC--CCC--ceEEEEcCCchHH-HHHHhhcCCCEEEEChHHHHHHHHhcC--CCC
Q 007085 171 GRNPLCLVLAPTRELAKQVEKEFHESA--PSL--DTICVYGGTPISH-QMRALDYGVDAVVGTPGRVIDLIKRNA--LNL 243 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~--~~~--~~~~~~~~~~~~~-~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~ 243 (618)
..+.+++|+.|+++|+.|++.++.++. +.. .+..........+ ........++|+|.||.++..++.... +.+
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 346799999999999999999999987 221 1222222211111 122223458999999999999888765 678
Q ss_pred CCcceEEEccchhccCC-CcHHHHHHHHHHCC-CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEE
Q 007085 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~ 321 (618)
..+..+|+||+|++++. .|..++..|+..+. ++..+-+||||.+..+++.+.....++..+.+-..+ .......+..
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~-sa~~~V~Qel 365 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN-SANETVDQEL 365 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecch-hHhhhhhhhh
Confidence 89999999999999988 88999999998875 566778899999999999999988888777543222 2222222233
Q ss_pred EEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHH--hcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEE
Q 007085 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 322 ~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~--~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
.+..+...|...+.+++..-.+ -++|||+++.+.|..|++.|. +.+.+.++|+..++.+|++.+++|+.|++.||||
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred eeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 4455666777888888877644 489999999999999999983 4589999999999999999999999999999999
Q ss_pred cCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 400 T~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
|+++++|+|+.+++.||+||.|.+..+|+||+||+||+|+.+.+++||++.+...++.+...+...--++|.+.
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~ 518 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKI 518 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999888877766654444444443
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.3e-42 Score=393.04 Aligned_cols=319 Identities=16% Similarity=0.217 Sum_probs=252.7
Q ss_pred CCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
..+....+.+.....+.||+.|.+||+.++.+ +|+|++++||+|||.+|+.+++..+.+ +++++|
T Consensus 584 ~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---------g~qvlv 654 (1147)
T PRK10689 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---------HKQVAV 654 (1147)
T ss_pred CCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---------CCeEEE
Confidence 34455666665544447999999999999987 799999999999999999888776543 778999
Q ss_pred EcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 179 LAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
|+||++||.|+++.+.+.+.. +++.++++..+...+...+. ..++|||+||+.+. ..+.+.++++||||
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVID 729 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVD 729 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEe
Confidence 999999999999999987653 45666777777666654433 35899999997542 34567899999999
Q ss_pred cchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchH
Q 007085 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (618)
|+|++ .......+..++.++|+++|||||++.+..+....+.++..+...... ...+..+.... ....
T Consensus 730 Eahrf-----G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~----r~~v~~~~~~~---~~~~ 797 (1147)
T PRK10689 730 EEHRF-----GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR----RLAVKTFVREY---DSLV 797 (1147)
T ss_pred chhhc-----chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC----CCCceEEEEec---CcHH
Confidence 99996 233456677788899999999999998888877777787766542211 11222222211 1122
Q ss_pred HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc---CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q 007085 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 333 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi 409 (618)
....++.+...+++++|||++++.++.+++.|.+. +++..+||+|++.+|++++.+|++|+++|||||+++++|||+
T Consensus 798 ~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI 877 (1147)
T PRK10689 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 (1147)
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc
Confidence 33445555556789999999999999999999764 578999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCC-CChhHHHHHhccCCCCCCcceEEEEech
Q 007085 410 PNVDLIIHYELP-NTSETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 410 ~~~~~VI~~~~p-~~~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
|++++||+.+++ .++.+|+||+||+||.++.++|++++.+
T Consensus 878 P~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999987765 4888999999999999999999999854
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.3e-42 Score=380.84 Aligned_cols=337 Identities=24% Similarity=0.368 Sum_probs=255.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
+|+++++++.+.+.|++.++.+|+|+|.++++. ++.++|+++++|||||||++|.+|++..+.. .+.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 567889999999999999999999999999986 7899999999999999999999999988754 1568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
|+|+++|+.|+++.+.++.. ++++..++++...... ....++|+|+||+++..++......++++++|||||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 99999999999999987532 4566777777654322 2245899999999999888766566889999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCe-EEEEEeccCC--cc-hHH
Q 007085 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMY--EK-PSI 333 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~ 333 (618)
.+..+...++.++..+....|+|++|||+++. ..+. .|+......... . .......+ .......... .+ ...
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la-~wl~~~~~~~~~-r-pv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELA-EWLNAELVVSDW-R-PVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHH-HHhCCccccCCC-C-CCcceeeEecCCeeeccCcchhcchHH
Confidence 98888999999999999999999999999863 3333 454432211100 0 00000000 0000000000 00 111
Q ss_pred HHH-HHHHhhcCCcEEEEecchhHHHHHHHHHHh----------------------------------cCCeeeecCcCC
Q 007085 334 IGQ-LITEHAKGGKCIVFTQTKRDADRLAHAMAK----------------------------------SYNCEPLHGDIS 378 (618)
Q Consensus 334 l~~-~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~lhg~~~ 378 (618)
+.. +.+....+.++||||++++.++.++..|.+ ...+..+|++|+
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 111 222233567999999999999887765532 124788999999
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE-------cCCCC-ChhHHHHHhccCCCCC--CcceEEEEec
Q 007085 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH-------YELPN-TSETFVHRTGRTGRAG--KKGSAILIYT 448 (618)
Q Consensus 379 ~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~-------~~~p~-~~~~~~Qr~GR~gR~g--~~g~~~~~~~ 448 (618)
+++|..+++.|++|.++|||||+++++|||+|.+++||. ++.|. ...+|+||+|||||.+ ..|.|++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999984 44444 6779999999999964 6789999987
Q ss_pred hhh
Q 007085 449 DQQ 451 (618)
Q Consensus 449 ~~~ 451 (618)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 654
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8e-41 Score=371.96 Aligned_cols=331 Identities=20% Similarity=0.290 Sum_probs=247.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
.|+++++++++++.++..++. |+++|.++++.+.+++++++++|||||||+++.++++..+.. +.++||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i 71 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYI 71 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEE
Confidence 567889999999999988887 999999999999999999999999999999999999888754 5689999
Q ss_pred cCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 180 APTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
+|+++|+.|++++++++.. +..+...+++...... ....++|+|+||+++..++.+....+.++++|||||+|++.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999999999987542 3455566665543221 22457999999999998887766668899999999999998
Q ss_pred CCCcHHHHHHHHHH---CCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEE----EEeccCCcch
Q 007085 259 SVGFAEDVEVILER---LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY----SIATSMYEKP 331 (618)
Q Consensus 259 ~~~~~~~~~~il~~---l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 331 (618)
+..+...++.++.. ++++.|+|+||||+++. .++ ..|+....... ............ ..........
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~l-a~wl~~~~~~~----~~r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NEL-AQWLNASLIKS----NFRPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHH-HHHhCCCccCC----CCCCCCeEEEEEecCeeeeccccccc
Confidence 87777777777654 45688999999999763 333 33443221110 000000000000 0000011111
Q ss_pred HHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHhc--------------------------CCeeeecCcCCHHHHHH
Q 007085 332 SIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--------------------------YNCEPLHGDISQSQRER 384 (618)
Q Consensus 332 ~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--------------------------~~~~~lhg~~~~~~r~~ 384 (618)
..+..++.+ ..+++++||||++++.++.++..|.+. ..+..+|++|++++|+.
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112333333 345789999999999999999888542 13677899999999999
Q ss_pred HHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCC---------CCChhHHHHHhccCCCCCC--cceEEEEechh
Q 007085 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL---------PNTSETFVHRTGRTGRAGK--KGSAILIYTDQ 450 (618)
Q Consensus 385 i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~---------p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 450 (618)
+++.|++|.++|||||+++++|||+|+.. ||+.+. |.+..+|.||+|||||.|. .|.+++++...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999864 444443 4588899999999999874 56677776543
No 50
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=312.94 Aligned_cols=331 Identities=30% Similarity=0.532 Sum_probs=283.6
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
-|.++-+.+++++++..++|++|...|.++||...-++++++++..|.|||.+|+++.++.+. +-.....+|++
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie------pv~g~vsvlvm 116 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVDGQVSVLVM 116 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC------CCCCeEEEEEE
Confidence 467788999999999999999999999999999999999999999999999999999988863 22234679999
Q ss_pred cCcHHHHHHHHHH---HHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 180 APTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 180 ~Pt~~La~q~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
|+|++||-|+.++ +.++.|..++.+.+|+.+++...+.+++.++|+|+||++++.+.++..+++.+++..|+|||+.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 9999999999765 5667789999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHH
Q 007085 257 MLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (618)
Q Consensus 257 ~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (618)
|+.+ +....+.++++..|...|++++|||++++++...+.++.+|..+-+ .+..........++++.....+|...+.
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v-DdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV-DDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhc-cchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 8653 4677888899999999999999999999999999999999998854 3444444555666777777777777777
Q ss_pred HHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEE
Q 007085 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415 (618)
Q Consensus 336 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~V 415 (618)
+++..+ +-.+++||+.++.... | +.+ +|||+++.+|+||..++.|
T Consensus 276 dLLd~L-eFNQVvIFvKsv~Rl~------------------------------f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 276 DLLDVL-EFNQVVIFVKSVQRLS------------------------------F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhhh-hhcceeEeeehhhhhh------------------------------h---hhh-hHHhhhhccccCcccceee
Confidence 777665 3358999998876610 2 123 8999999999999999999
Q ss_pred EEcCCCCChhHHHHHhccCCCCCCcceEEEEechh-hHHHHHHHHHHhcCCcccCCcc
Q 007085 416 IHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 416 I~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
++||+|.+..+|+||++||||.|.+|.++++.... +...+..+.+..+..+.++|..
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999998754 5566777888888877777764
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.3e-41 Score=359.13 Aligned_cols=340 Identities=23% Similarity=0.356 Sum_probs=265.6
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++.+.++++.+ |..|||.|.+||+.|.+|+|+||++|||||||+++++|++..+.+.. ......+..+|+|.|.++|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 689999999988 99999999999999999999999999999999999999999998853 1122346789999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC--CCCCCcceEEEccchhccCCC
Q 007085 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVG 261 (618)
Q Consensus 186 a~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDEaH~~~~~~ 261 (618)
.+++...+..+.. ++.+.+.+|+++...+.+..++.+|||||||+.|.-++.... -.+.++++|||||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999987654 566788899999999999999999999999999987765432 248899999999999998777
Q ss_pred cHHHHHHHHHHC---CCCCcEEEEEeeCchHHHHHHHHhcCCCc-EEEeccCCcccccCCeEEEEEecc----CCcchHH
Q 007085 262 FAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATS----MYEKPSI 333 (618)
Q Consensus 262 ~~~~~~~il~~l---~~~~~~l~lSAT~~~~~~~~~~~~l~~~~-~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 333 (618)
.+.++.--++++ ..+.|.|++|||..+. .....|+.-.. ...++.....+ ...+........ ...-...
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAK-KLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCC-cceEEEEecCCccccccchhHHH
Confidence 666655554443 2389999999999753 22333332221 11111111111 111111111111 1111223
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc--CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~ 411 (618)
+..+.+...+...+|||+||+..++.++..|++. ..+..+||.++.++|..++++|++|+.+++|||+.++-|||+.+
T Consensus 243 ~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~ 322 (814)
T COG1201 243 YERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGD 322 (814)
T ss_pred HHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCC
Confidence 3333333344558999999999999999999876 58899999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHhccCCC-CCCcceEEEEechh
Q 007085 412 VDLIIHYELPNTSETFVHRTGRTGR-AGKKGSAILIYTDQ 450 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR-~g~~g~~~~~~~~~ 450 (618)
++.||++..|.++..++||+||+|. .+...+.+++....
T Consensus 323 vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 323 IDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred ceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 9999999999999999999999986 56777777777663
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.6e-40 Score=355.14 Aligned_cols=317 Identities=21% Similarity=0.232 Sum_probs=234.7
Q ss_pred HHHHHHH-cCCCCChHHHHHHHHHHhCCC-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE-EcCcHHHH
Q 007085 110 IVAALAR-RGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELA 186 (618)
Q Consensus 110 l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li-l~Pt~~La 186 (618)
+.+.++. .++. |+|||.++++.++.++ ++++++|||||||.++.++++... . ....++.|| ++||++|+
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~------~~~~~~rLv~~vPtReLa 75 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I------GAKVPRRLVYVVNRRTVV 75 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c------cccccceEEEeCchHHHH
Confidence 3344443 4777 9999999999999998 588899999999987654444221 1 112344555 77999999
Q ss_pred HHHHHHHHHhCC-------------------------CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC
Q 007085 187 KQVEKEFHESAP-------------------------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241 (618)
Q Consensus 187 ~q~~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~ 241 (618)
.|+++++.++.. .+++.+++|+.+...+...+..+++|||+|++.+. +..+
T Consensus 76 ~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~L 151 (844)
T TIGR02621 76 DQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRLL 151 (844)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCcc
Confidence 999999887653 25678889999998998889889999999965553 3332
Q ss_pred ----------------CCCCcceEEEccchhccCCCcHHHHHHHHHHC--CC---CCcEEEEEeeCchHHHHHHHHhcCC
Q 007085 242 ----------------NLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ---NRQSMMFSATMPPWIRSLTNKYLKN 300 (618)
Q Consensus 242 ----------------~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l--~~---~~~~l~lSAT~~~~~~~~~~~~l~~ 300 (618)
.+.++++||+|||| ++++|...+..|+..+ ++ ++|+++||||++..+..+...++.+
T Consensus 152 ~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~ 229 (844)
T TIGR02621 152 FSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAE 229 (844)
T ss_pred ccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccC
Confidence 26789999999999 5788999999999975 33 2699999999999888887777777
Q ss_pred CcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHH-HH-hhcCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCC
Q 007085 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-TE-HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378 (618)
Q Consensus 301 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~ 378 (618)
+..+.+... ......+.++ ...+...+...+...+ .. ...++++||||++++.++.+++.|.+. ....+||+|+
T Consensus 230 p~~i~V~~~--~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~~lLHG~m~ 305 (844)
T TIGR02621 230 DYKHPVLKK--RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KFELLTGTLR 305 (844)
T ss_pred Cceeecccc--cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CCeEeeCCCC
Confidence 765544321 1122223333 2222222332222221 11 124578999999999999999999764 2389999999
Q ss_pred HHHHH-----HHHHHHhc----CC-------ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcce
Q 007085 379 QSQRE-----RTLSAFRD----GR-------FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGS 442 (618)
Q Consensus 379 ~~~r~-----~i~~~f~~----g~-------~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~ 442 (618)
+.+|+ ++++.|++ ++ ..|||||+++++||||+. ++||++..| ++.|+||+||++|.|+.+.
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQA 382 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCC
Confidence 99999 78999987 43 689999999999999975 889987766 6899999999999987533
Q ss_pred E-EEEe
Q 007085 443 A-ILIY 447 (618)
Q Consensus 443 ~-~~~~ 447 (618)
+ ++++
T Consensus 383 ~~i~vv 388 (844)
T TIGR02621 383 CQIAVV 388 (844)
T ss_pred ceEEEE
Confidence 3 4443
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.3e-39 Score=369.86 Aligned_cols=321 Identities=23% Similarity=0.338 Sum_probs=231.6
Q ss_pred EEccCCChhHHHHHHHHHHHHHHHhhhc----CCCCCCeEEEEcCcHHHHHHHHHHHHHh--------------CCCCce
Q 007085 141 GRARTGTGKTLAFGIPILDKIIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFHES--------------APSLDT 202 (618)
Q Consensus 141 i~~~tGsGKT~~~l~~~l~~l~~~~~~~----~~~~~~~~lil~Pt~~La~q~~~~l~~~--------------~~~~~~ 202 (618)
|++|||||||++|++|++..+....... ....+.++|||+|+++|++|+++.++.. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987642110 1123679999999999999999988641 124677
Q ss_pred EEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC-CCCCCcceEEEccchhccCCCcHHH----HHHHHHHCCCCC
Q 007085 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLDEADQMLSVGFAED----VEVILERLPQNR 277 (618)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vViDEaH~~~~~~~~~~----~~~il~~l~~~~ 277 (618)
.+.+|+++..++.+.+++.++|||+||++|..++.+.. ..++++++|||||+|.+.+..++.+ +..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 78899999888888888889999999999988776432 3589999999999999987654444 444555556789
Q ss_pred cEEEEEeeCchHHHHHHHHhcCC--CcEEEeccCCcccccCCeEEEEEeccCCc---------------------chHHH
Q 007085 278 QSMMFSATMPPWIRSLTNKYLKN--PLTVDLVGDSDQKLADGISLYSIATSMYE---------------------KPSII 334 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~~~~~l~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l 334 (618)
|+|++|||+++. +++. .++.. +..+ +.....+ ...+... ++..... .....
T Consensus 161 QrIgLSATI~n~-eevA-~~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVA-AFLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred eEEEEEeeCCCH-HHHH-HHhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhccccccccccccchhhhhhhhHHHH
Confidence 999999999873 3433 45542 3333 2211111 1112211 1111000 00112
Q ss_pred HHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcC----------------------------------CeeeecCcCCHH
Q 007085 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY----------------------------------NCEPLHGDISQS 380 (618)
Q Consensus 335 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------~~~~lhg~~~~~ 380 (618)
..++.......++||||++++.|+.++..|++.. .+..+||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 2344444456799999999999999999886521 156789999999
Q ss_pred HHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC-CCcceEEEEechhhHHHHH---
Q 007085 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA-GKKGSAILIYTDQQARQVK--- 456 (618)
Q Consensus 381 ~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~-g~~g~~~~~~~~~~~~~~~--- 456 (618)
+|..+++.|++|++++||||+.++.|||++++++||+++.|.++.+|+||+||+||. +..+.++++..... ..++
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~-dlle~~~ 393 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRR-DLVDSAV 393 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHH-HHHhhHH
Confidence 999999999999999999999999999999999999999999999999999999996 34455554444322 2121
Q ss_pred HHHHHhcCCccc
Q 007085 457 SIERDVGCRFTQ 468 (618)
Q Consensus 457 ~l~~~l~~~~~~ 468 (618)
.++..++..+++
T Consensus 394 ~ve~~l~g~iE~ 405 (1490)
T PRK09751 394 IVECMFAGRLEN 405 (1490)
T ss_pred HHHHHhcCCCCc
Confidence 244555555544
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-39 Score=337.86 Aligned_cols=324 Identities=23% Similarity=0.381 Sum_probs=252.3
Q ss_pred HHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007085 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 112 ~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
..|++ .++..+++-|.++|..+++++|+|+..|||.||+++|++|++-. ...+|||.|..+|...+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHH
Confidence 44543 68999999999999999999999999999999999999998754 347999999999999999
Q ss_pred HHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC--cHH
Q 007085 191 KEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAE 264 (618)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~--~~~ 264 (618)
+.++... +.+..+.+.-+..++...+. ...++|+.+|++|..-.....+.-..+.++||||||++..|+ |.+
T Consensus 75 ~~l~~~G--i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 75 DQLEAAG--IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHHHHcC--ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 9999874 66666666655544433322 248999999999964333333345678899999999999996 776
Q ss_pred HHHHH---HHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCc--EEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHH
Q 007085 265 DVEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL--TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339 (618)
Q Consensus 265 ~~~~i---l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 339 (618)
.+..+ ...++ +.+++++|||.++.+...+...+.... .+.. .-..+.+...+. .....+.+ +. .+.
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~-sfdRpNi~~~v~-----~~~~~~~q-~~-fi~ 223 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG-SFDRPNLALKVV-----EKGEPSDQ-LA-FLA 223 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe-cCCCchhhhhhh-----hcccHHHH-HH-HHH
Confidence 66655 44454 889999999999998887776654322 2211 111111111111 11111112 22 233
Q ss_pred H--hhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEE
Q 007085 340 E--HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416 (618)
Q Consensus 340 ~--~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI 416 (618)
+ .......||||.|++.++.+++.|... +.+..+|++|+.++|+.+.++|..++.+|+|||.++++|||.|++++||
T Consensus 224 ~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 224 TVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred hhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE
Confidence 2 334567899999999999999999775 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 417 HYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 417 ~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
||++|.+++.|.|.+|||||.|.+..|++++.+.|....+.+
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 999999999999999999999999999999998886544433
No 55
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.6e-37 Score=304.54 Aligned_cols=320 Identities=22% Similarity=0.291 Sum_probs=241.4
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC--
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-- 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~-- 197 (618)
.+++.||......++.. |+||+.|||.|||+++++.+...+.. ..+ ++|+++||+-|+.|+++.+.+.+
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 45899999998888775 99999999999999998888877654 223 89999999999999999999976
Q ss_pred CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
|...++.++|......+...+. ..+|+|+||+.+.+.+....+++.++.+||+||||+-.....+..+.+.+-....++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 4466788888888776666554 469999999999999999999999999999999999776656666666666667788
Q ss_pred cEEEEEeeCchHHH---HHHHHhcCCCcEEEeccCC--------------------------------------------
Q 007085 278 QSMMFSATMPPWIR---SLTNKYLKNPLTVDLVGDS-------------------------------------------- 310 (618)
Q Consensus 278 ~~l~lSAT~~~~~~---~~~~~~l~~~~~i~~~~~~-------------------------------------------- 310 (618)
.+++|||||-.+.. +...+..-....+....+.
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999953322 2222111000000000000
Q ss_pred ---------------------------c----------------------------------------cccc--------
Q 007085 311 ---------------------------D----------------------------------------QKLA-------- 315 (618)
Q Consensus 311 ---------------------------~----------------------------------------~~~~-------- 315 (618)
+ ....
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0 0000
Q ss_pred --CC---------eEEEEEeccCCcchHHHHHHHHHhh---cCCcEEEEecchhHHHHHHHHHHhcC-Ce--eee-----
Q 007085 316 --DG---------ISLYSIATSMYEKPSIIGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAKSY-NC--EPL----- 373 (618)
Q Consensus 316 --~~---------~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~-~~--~~l----- 373 (618)
.. ........-.+.|...+.+++++.. .+.++|||++.++.++.+.++|.+.. .+ ..+
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 00 0000011112235555556666543 35699999999999999999997742 22 111
Q ss_pred --cCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 374 --HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 374 --hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
..+|+|.++.+++++|++|+++|||||++.++|||||+++.||+|++-.|...++||.||+||. ++|.++++++..
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 2579999999999999999999999999999999999999999999999999999999999998 789999998876
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.3e-37 Score=335.50 Aligned_cols=314 Identities=18% Similarity=0.244 Sum_probs=227.4
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHH---------HHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAF---------GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~---------l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
.+|+++++.+++++++|++|+||||||.+. +.+.+..+.+.. +.....+++|++||++||.|+..++.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 479999999999999999999999999862 223333332110 12235689999999999999999987
Q ss_pred HhC-----CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHH
Q 007085 195 ESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 195 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+.. ....+.+.+++... ..........+|+|+|+.... ..+.++++|||||||.+... ...+..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~--~DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQI--GDIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccc--hhHHHHH
Confidence 643 23446777888763 222222235799999965211 24788999999999998664 3455555
Q ss_pred HHHCC-CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc----------CCcchHHHHHHH
Q 007085 270 LERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS----------MYEKPSIIGQLI 338 (618)
Q Consensus 270 l~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~l 338 (618)
+..+. ..+|+++||||+++++..+ ..++.++..+.+... ....+++++.... ...+...+..+.
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 55443 3459999999999887766 578888887765321 2223343333221 111222232222
Q ss_pred HHh-hcCCcEEEEecchhHHHHHHHHHHhc---CCeeeecCcCCHHHHHHHHHHH-hcCCccEEEEcCccccCCCCCCcc
Q 007085 339 TEH-AKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAF-RDGRFNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 339 ~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f-~~g~~~vLVaT~~~~~GlDi~~~~ 413 (618)
... ..++++||||+++++++.+++.|.+. +.+..+||++++. ++++++| ++++.+|||||+++++|||||+++
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 221 13468999999999999999999763 7899999999975 4667777 689999999999999999999999
Q ss_pred EEEEcC---CCC---------ChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 414 LIIHYE---LPN---------TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 414 ~VI~~~---~p~---------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+||+++ .|. +.++|+||+||+||. ++|.|+.++++.+...+..+
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 999998 554 788999999999999 89999999998876544443
No 57
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6e-38 Score=341.60 Aligned_cols=353 Identities=20% Similarity=0.295 Sum_probs=280.7
Q ss_pred cCccchhHHhhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC---
Q 007085 69 LDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--- 136 (618)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--- 136 (618)
++.-....|+.....+.+.+. +......+.. .++.+.+..+.+...-.+.-|+-|..||+.+.++
T Consensus 536 L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~---af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~ 612 (1139)
T COG1197 536 LHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGF---AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMES 612 (1139)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhcc
Confidence 455556789876443333221 2222223333 5666788888888877777999999999999875
Q ss_pred ---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc--eEEEEcCCch
Q 007085 137 ---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPI 211 (618)
Q Consensus 137 ---~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~--~~~~~~~~~~ 211 (618)
+|.|||+++|.|||.+++-+++..++. +++|.|+|||..||+|+++.|++.|.++. +..+.--.+.
T Consensus 613 ~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~ 683 (1139)
T COG1197 613 GKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSA 683 (1139)
T ss_pred CCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCH
Confidence 689999999999999999999998866 88999999999999999999999887554 4444433444
Q ss_pred HHHHH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 212 SHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 212 ~~~~~---~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
+++.. .++. .+||||+|+..| ...+.+.++.++||||-|+ |+...++-++.++.+..+|-|||||.
T Consensus 684 kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPI 753 (1139)
T COG1197 684 KEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPI 753 (1139)
T ss_pred HHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCC
Confidence 44433 3333 499999995544 4456699999999999999 78888999999999999999999999
Q ss_pred hHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc
Q 007085 288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS 367 (618)
Q Consensus 288 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 367 (618)
|.+..+...-+.+...|...+. ....+.....+ .+...+-..++.++..++++...+|.++.++.+++.|++.
T Consensus 754 PRTL~Msm~GiRdlSvI~TPP~------~R~pV~T~V~~-~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L 826 (1139)
T COG1197 754 PRTLNMSLSGIRDLSVIATPPE------DRLPVKTFVSE-YDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL 826 (1139)
T ss_pred cchHHHHHhcchhhhhccCCCC------CCcceEEEEec-CChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh
Confidence 9988888887777777654221 22222222222 2223344456667778999999999999999999999885
Q ss_pred ---CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcceE
Q 007085 368 ---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSA 443 (618)
Q Consensus 368 ---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~ 443 (618)
.++.+.||.|+..+-+++|..|.+++++|||||.++|.|||||+++++|+.++.. .+++++|..||+||..+.++|
T Consensus 827 VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 827 VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEE
Confidence 4588899999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred EEEechh
Q 007085 444 ILIYTDQ 450 (618)
Q Consensus 444 ~~~~~~~ 450 (618)
++++.+.
T Consensus 907 Yfl~p~~ 913 (1139)
T COG1197 907 YFLYPPQ 913 (1139)
T ss_pred EEeecCc
Confidence 9999864
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.9e-37 Score=337.37 Aligned_cols=304 Identities=18% Similarity=0.282 Sum_probs=231.1
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CCce
Q 007085 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDT 202 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~ 202 (618)
.+-.+.+..+.++.++|++++||||||+++.+++++... ..++++|+.|++++|.|+++.+.+.+. .+..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 445567777888899999999999999999999987752 146899999999999999999865442 2221
Q ss_pred EE--EEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch-hccCCCcHHH-HHHHHHHCCCCCc
Q 007085 203 IC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQ 278 (618)
Q Consensus 203 ~~--~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH-~~~~~~~~~~-~~~il~~l~~~~~ 278 (618)
.+ ...... ......+|+|+|++.|++.+... ..+.++++|||||+| +.++.++... +..+...++++.|
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 11 111111 23345799999999999988764 468999999999999 5676655443 3456666788999
Q ss_pred EEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch-----HHHHHHHHHhhcCCcEEEEecc
Q 007085 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-----SIIGQLITEHAKGGKCIVFTQT 353 (618)
Q Consensus 279 ~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~~lVf~~~ 353 (618)
+|+||||++... +..++.++..+...... ..+++++.......+. ..+..++.. ..+++||||++
T Consensus 149 lIlmSATl~~~~---l~~~l~~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg 218 (819)
T TIGR01970 149 ILAMSATLDGER---LSSLLPDAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPG 218 (819)
T ss_pred EEEEeCCCCHHH---HHHHcCCCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECC
Confidence 999999999753 45677666665542221 1233444433322221 122333322 35789999999
Q ss_pred hhHHHHHHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCC------
Q 007085 354 KRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT------ 423 (618)
Q Consensus 354 ~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~------ 423 (618)
+++++.+++.|.+ .+.+..+||+|++++|.++++.|++|+.+|||||+++++|||||+|++||+++.++.
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 9999999999976 477899999999999999999999999999999999999999999999999998752
Q ss_pred ------------hhHHHHHhccCCCCCCcceEEEEechhhHHH
Q 007085 424 ------------SETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 424 ------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
-.+++||+||+||. ++|.||.++++.+...
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 34589999999999 8999999999876543
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.4e-37 Score=319.18 Aligned_cols=300 Identities=19% Similarity=0.240 Sum_probs=210.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHH----
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH---- 213 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~---- 213 (618)
+++|++|||||||++|+++++..+.+ ....+++|++|+++|+.|+++.+.+++.. .+..+++......
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhcc
Confidence 47999999999999999999987643 22568999999999999999999998643 3344444322110
Q ss_pred -------H-HHHh-h-----cCCCEEEEChHHHHHHHHhcC----CC--CCCcceEEEccchhccCCCcHHHHHHHHHHC
Q 007085 214 -------Q-MRAL-D-----YGVDAVVGTPGRVIDLIKRNA----LN--LSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 214 -------~-~~~~-~-----~~~~Ilv~T~~~l~~~l~~~~----~~--~~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
. .... . ...+|+|+||++++..+.... .. ....++|||||+|.+.+..+.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 0 0000 1 136899999999987765411 01 1123789999999998754333 55555555
Q ss_pred C-CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEec
Q 007085 274 P-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352 (618)
Q Consensus 274 ~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~ 352 (618)
+ .+.|+++||||+|+.+.++...+...+..... ......................+...+..+++...++.++||||+
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPL-DLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCC-CCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 4 57899999999998777666554332211111 000000000111111122223456667777776667789999999
Q ss_pred chhHHHHHHHHHHhcC---CeeeecCcCCHHHHHH----HHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChh
Q 007085 353 TKRDADRLAHAMAKSY---NCEPLHGDISQSQRER----TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425 (618)
Q Consensus 353 ~~~~~~~l~~~L~~~~---~~~~lhg~~~~~~r~~----i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~ 425 (618)
+++.++.+++.|.+.. .+..+||++++.+|.+ +++.|++++..|||||+++++|||++ +++||++..| ++
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 9999999999997653 4889999999999976 48899999999999999999999994 8899988766 78
Q ss_pred HHHHHhccCCCCCCc----ceEEEEechh
Q 007085 426 TFVHRTGRTGRAGKK----GSAILIYTDQ 450 (618)
Q Consensus 426 ~~~Qr~GR~gR~g~~----g~~~~~~~~~ 450 (618)
.|+||+||++|.|+. +.++++....
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999999998754 2566665543
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3e-36 Score=333.67 Aligned_cols=304 Identities=20% Similarity=0.287 Sum_probs=227.6
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CCc
Q 007085 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLD 201 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~ 201 (618)
..+-.+.+..+.++++++++++||||||+++.+++++... ...+++|++||+++|.|+++.+.+.+. ...
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 3445567778888899999999999999999988886531 135899999999999999999865432 222
Q ss_pred --eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh-ccCCCcH-HHHHHHHHHCCCCC
Q 007085 202 --TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFA-EDVEVILERLPQNR 277 (618)
Q Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~-~~~~~~~-~~~~~il~~l~~~~ 277 (618)
+........ .......|+|+|+++|++.+... ..+.++++|||||+|. .++.++. ..+..++..++++.
T Consensus 78 ~~VGy~vr~~~------~~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 78 ETVGYRMRAES------KVGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred ceEEEEecCcc------ccCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 222222221 12234689999999999988764 4689999999999996 4443332 23445667778899
Q ss_pred cEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchH-----HHHHHHHHhhcCCcEEEEec
Q 007085 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-----IIGQLITEHAKGGKCIVFTQ 352 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~~lVf~~ 352 (618)
|+|+||||++.. .+..++.++..+...... ..+++++.......+.. .+..++.+ ..+.+||||+
T Consensus 151 qlilmSATl~~~---~l~~~~~~~~~I~~~gr~-----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlp 220 (812)
T PRK11664 151 KLLIMSATLDND---RLQQLLPDAPVIVSEGRS-----FPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLP 220 (812)
T ss_pred eEEEEecCCCHH---HHHHhcCCCCEEEecCcc-----ccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcC
Confidence 999999999874 345677666665443221 12333333333222221 22233322 3578999999
Q ss_pred chhHHHHHHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCC-----
Q 007085 353 TKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT----- 423 (618)
Q Consensus 353 ~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~----- 423 (618)
++++++.+++.|.+ .+.+..+||++++++|+++++.|++|+.+|||||+++++||||++|++||+++.++.
T Consensus 221 g~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~ 300 (812)
T PRK11664 221 GVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDP 300 (812)
T ss_pred CHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccc
Confidence 99999999999975 477889999999999999999999999999999999999999999999999777642
Q ss_pred -------------hhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 424 -------------SETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 424 -------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
-++|.||+||+||. .+|.||.++++.+..
T Consensus 301 ~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 301 KTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred cCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 35799999999999 799999999987654
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8e-36 Score=319.12 Aligned_cols=305 Identities=15% Similarity=0.174 Sum_probs=217.0
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
...|+++|.++++.++.+.+.++++|||+|||+++...+ ..+.+ ....++||||||++|+.||.+++.++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 357999999999999999999999999999999764322 22222 1134899999999999999999998653
Q ss_pred --CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCC
Q 007085 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
...+..+.++.... ...+|+|+|++++.+.... .+.++++||+||||++.. ..+..++..+++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~ 249 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTG----KSLTSIITKLDNC 249 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccc----hhHHHHHHhhhcc
Confidence 23344455554321 3479999999999764422 367899999999999854 4567778888778
Q ss_pred CcEEEEEeeCchHHHHHH--HHhcCCCcEEEeccCC--cccccCCeEEEE-----------------------EeccCCc
Q 007085 277 RQSMMFSATMPPWIRSLT--NKYLKNPLTVDLVGDS--DQKLADGISLYS-----------------------IATSMYE 329 (618)
Q Consensus 277 ~~~l~lSAT~~~~~~~~~--~~~l~~~~~i~~~~~~--~~~~~~~~~~~~-----------------------~~~~~~~ 329 (618)
.++++|||||++...... ..++. +....+.... ............ .......
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 899999999975322111 11111 1111110000 000000000000 0011112
Q ss_pred chHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEc-CccccC
Q 007085 330 KPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARG 406 (618)
Q Consensus 330 ~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT-~~~~~G 406 (618)
+..++..++... ..+.+++|||.++++++.+++.|.+ ..++..+||++++++|+++++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 233333343333 3467899999999999999999976 4889999999999999999999999999999998 899999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcc-eEEEE
Q 007085 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG-SAILI 446 (618)
Q Consensus 407 lDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g-~~~~~ 446 (618)
+|+|++++||++.++.+...|+||+||++|.+... .|.++
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999999999999999999976543 45544
No 62
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=302.05 Aligned_cols=338 Identities=24% Similarity=0.347 Sum_probs=266.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
+....+++++++++.+.|+..+++.|.|.|..++++ ++.+.|.+|..+|.||||++.-++-+..++. .+.+
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~K 263 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKK 263 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCe
Confidence 445678999999999999999999999999999987 7899999999999999999998888777765 3678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCCCce--EEEEcCCchHHHHH----HhhcCCCEEEEChHHHHHHHHhcCCCCCCcceE
Q 007085 176 CLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (618)
.|+++|..+||+|.+++|++.+..+.. .+-.|-.......+ .....+||||+|++-+..++... ..+.++..|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 999999999999999999988765543 33333333222221 12235899999999998888776 568999999
Q ss_pred EEccchhccCCCcHHHHHHHHHHC---CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc
Q 007085 250 VLDEADQMLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 250 ViDEaH~~~~~~~~~~~~~il~~l---~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
||||+|.+.+...+..+.-++.++ -+..|+|.+|||+-+. .+++..+-.++..++ .+....-.+..+...
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~------~RPVplErHlvf~~~ 415 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD------ERPVPLERHLVFARN 415 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec------CCCCChhHeeeeecC
Confidence 999999998876666666665554 4689999999999664 344554443333332 122222234445556
Q ss_pred CCcchHHHHHHHHHhhc-------CCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEE
Q 007085 327 MYEKPSIIGQLITEHAK-------GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (618)
Q Consensus 327 ~~~~~~~l~~~l~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLV 398 (618)
..+|.+++..+++..-. .+++|||+++++.|..++++|.. .+++.++|++++..+|+.+...|.++++.++|
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 77888888888775421 46999999999999999999964 59999999999999999999999999999999
Q ss_pred EcCccccCCCCCCccEEEE---cCCCC-ChhHHHHHhccCCCCC--CcceEEEEechh
Q 007085 399 ATDVAARGLDVPNVDLIIH---YELPN-TSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 399 aT~~~~~GlDi~~~~~VI~---~~~p~-~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
+|-+++.|+|+|.-++|+. +...| ++.+|.|+.|||||.+ ..|+++++..+.
T Consensus 496 TTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 496 TTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999987655442 33344 9999999999999964 678888887654
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=323.25 Aligned_cols=333 Identities=22% Similarity=0.336 Sum_probs=251.1
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
...+++.+.+.++..++.++.+.|+.++.... .++|+||++|||||||++++++++..+.+. +.++|+|||
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivP 84 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVP 84 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeC
Confidence 34578888888888888889999988887655 459999999999999999999999998762 468999999
Q ss_pred cHHHHHHHHHHHHHhC-CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCC
Q 007085 182 TRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (618)
Q Consensus 182 t~~La~q~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~ 260 (618)
+++||++.+++++++- -++++...+++...... .-..++|||+||+++...+.+....+.++++|||||+|.+.+.
T Consensus 85 lkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 85 LKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred hHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 9999999999999322 25788888887774442 2245799999999999999887777889999999999999887
Q ss_pred CcHHHHHHHHHHCC---CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc-------CCcc
Q 007085 261 GFAEDVEVILERLP---QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-------MYEK 330 (618)
Q Consensus 261 ~~~~~~~~il~~l~---~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 330 (618)
..+..++.++.+++ ...|++.+|||+|+. ..+..|+.-.......................... ....
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 67777777776654 347999999999984 33444543332221111111111111111111111 1223
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh--------------------------------------cCCeee
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------------------------------SYNCEP 372 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~--------------------------------------~~~~~~ 372 (618)
...+..++..+.+++++||||++++.+...++.|.+ ...+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 455666666777899999999999999888887762 012456
Q ss_pred ecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEE----EcC-----CCCChhHHHHHhccCCCCC--Ccc
Q 007085 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----HYE-----LPNTSETFVHRTGRTGRAG--KKG 441 (618)
Q Consensus 373 lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI----~~~-----~p~~~~~~~Qr~GR~gR~g--~~g 441 (618)
+|++++.++|..+.+.|++|+++|||||++++.|+|+|.-.+|| .|+ .+.+..+++|+.|||||.+ ..|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 79999999999999999999999999999999999998766665 355 3457889999999999975 556
Q ss_pred eEEEEec
Q 007085 442 SAILIYT 448 (618)
Q Consensus 442 ~~~~~~~ 448 (618)
.++++.+
T Consensus 400 ~~~i~~~ 406 (766)
T COG1204 400 EAIILAT 406 (766)
T ss_pred cEEEEec
Confidence 6777663
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.3e-35 Score=332.60 Aligned_cols=302 Identities=22% Similarity=0.324 Sum_probs=225.9
Q ss_pred HHHHHHHHc-CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 109 DIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 109 ~l~~~l~~~-~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
++.+.+++. ++ +||++|+.+++.++.++|+++++|||+|||. +.++++..+.. .+.++|||+||++|+.
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHH
Confidence 344556554 55 7999999999999999999999999999996 44555444322 2678999999999999
Q ss_pred HHHHHHHHhCCCC--ceEEEEcCCch-----HHHHHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 188 QVEKEFHESAPSL--DTICVYGGTPI-----SHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 188 q~~~~l~~~~~~~--~~~~~~~~~~~-----~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
|+++.++++.... .+.+++++... ......+. ..++|+|+||++|.+.+. .+...++++|||||||++++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 9999999987543 44455554431 22223334 458999999999998776 35566799999999999986
Q ss_pred -----------CCcH-HHHHHHHHHCCC------------------------CCcEEEEEeeCchH-HHHHHHHhcCCCc
Q 007085 260 -----------VGFA-EDVEVILERLPQ------------------------NRQSMMFSATMPPW-IRSLTNKYLKNPL 302 (618)
Q Consensus 260 -----------~~~~-~~~~~il~~l~~------------------------~~~~l~lSAT~~~~-~~~~~~~~l~~~~ 302 (618)
.+|. +.+..++..++. ..|++++|||+++. +.. .++.++.
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll 292 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELL 292 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccc
Confidence 5564 667777777654 68999999999874 332 2233444
Q ss_pred EEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhH---HHHHHHHHHh-cCCeeeecCcCC
Q 007085 303 TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAK-SYNCEPLHGDIS 378 (618)
Q Consensus 303 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~-~~~~~~lhg~~~ 378 (618)
.+.+... .....++.+...... .+...+..+++... ..+||||++.+. ++.+++.|.+ ++++..+|++|
T Consensus 293 ~~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l- 365 (1176)
T PRK09401 293 GFEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF- 365 (1176)
T ss_pred eEEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-
Confidence 4433221 112233444444333 56667777776553 579999999777 9999999976 49999999999
Q ss_pred HHHHHHHHHHHhcCCccEEEE----cCccccCCCCCC-ccEEEEcCCCC------ChhHHHHHhccCCC
Q 007085 379 QSQRERTLSAFRDGRFNILIA----TDVAARGLDVPN-VDLIIHYELPN------TSETFVHRTGRTGR 436 (618)
Q Consensus 379 ~~~r~~i~~~f~~g~~~vLVa----T~~~~~GlDi~~-~~~VI~~~~p~------~~~~~~Qr~GR~gR 436 (618)
++.+++|++|+++|||| |++++||||+|+ +++||||+.|. ..+.+.||++|+..
T Consensus 366 ----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 ----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 699999999999 89999999998 56778999999864
No 65
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7e-35 Score=339.20 Aligned_cols=327 Identities=17% Similarity=0.264 Sum_probs=242.1
Q ss_pred HHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007085 108 QDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 108 ~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
.++.+.|++ .++ +||++|+++++.+++++++++++|||+|||++++++++.... .+.++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHH
Confidence 455667766 788 699999999999999999999999999999966555443321 256899999999999
Q ss_pred HHHHHHHHHhCCC----CceEEEEcCCchHHHHH---Hhhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 187 KQVEKEFHESAPS----LDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 187 ~q~~~~l~~~~~~----~~~~~~~~~~~~~~~~~---~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
.|+++.++.++.. +.+..++++.+...+.. .+.. .++|||+||+.|.+.+... . ..++++|||||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecc
Confidence 9999999987643 34566778777665533 2333 4899999999998766542 2 2679999999999998
Q ss_pred C-----------CCcHHHHHH----HHH----------------------HCCCCCc-EEEEEeeCchHHHHHHHHhcCC
Q 007085 259 S-----------VGFAEDVEV----ILE----------------------RLPQNRQ-SMMFSATMPPWIRSLTNKYLKN 300 (618)
Q Consensus 259 ~-----------~~~~~~~~~----il~----------------------~l~~~~~-~l~lSAT~~~~~~~~~~~~l~~ 300 (618)
+ .+|.+++.. ++. .++...| ++++|||+++. .....++.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhc
Confidence 6 367666653 321 2344555 56799999863 112234455
Q ss_pred CcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhH---HHHHHHHHHh-cCCeeeecCc
Q 007085 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAK-SYNCEPLHGD 376 (618)
Q Consensus 301 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~-~~~~~~lhg~ 376 (618)
+..+.+.. .......+.+.++......+ ..+..+++.. +..+||||++++. ++.+++.|.+ .+++..+|++
T Consensus 292 ~l~f~v~~--~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVGS--GRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred CeEEEecC--CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 55554422 22233344444444333333 4566666654 4589999999875 5899999976 5999999985
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEc----CccccCCCCCC-ccEEEEcCCCC---ChhHHHHHh-------------ccCC
Q 007085 377 ISQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLIIHYELPN---TSETFVHRT-------------GRTG 435 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT----~~~~~GlDi~~-~~~VI~~~~p~---~~~~~~Qr~-------------GR~g 435 (618)
|..+++.|++|+++||||| ++++||||+|+ +++||||+.|. +++.|.|.. +|++
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8899999999999999999 58999999999 99999999999 888776655 9999
Q ss_pred CCCCcceEEEEechhhHHHHHHH
Q 007085 436 RAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 436 R~g~~g~~~~~~~~~~~~~~~~l 458 (618)
|.|.+..+++.+...+...++.+
T Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 442 KEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred ccCCcchhHHHhHHHHHHHHHHH
Confidence 99988888866666666555544
No 66
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=9.2e-35 Score=280.15 Aligned_cols=301 Identities=31% Similarity=0.506 Sum_probs=226.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhC-----CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCc
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~ 246 (618)
+.+++||+-|.++|++|.++.++++- |.++..++.++.....+...+.++.+|+|+||.++.+.+....+.+.++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 35679999999999999999766543 2345567788888889999999999999999999999999999999999
Q ss_pred ceEEEccchhccCCCcHHHHHHHHHHCCC------CCcEEEEEeeCch-HHHHHHHHhcCCCcEEEeccCCcc-cccCC-
Q 007085 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ------NRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQ-KLADG- 317 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~------~~~~l~lSAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~-~~~~~- 317 (618)
.++|+||++.++..++.+.+..+...++. ..|.++.|||+.. ++..+....+.-|.-+.+...... ....+
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999999988888888888777753 5789999999853 233334444443443333211100 00000
Q ss_pred ------------------eE-------EEEEe--ccCCc---chH-----HHHHHHHHhhcCCcEEEEecchhHHHHHHH
Q 007085 318 ------------------IS-------LYSIA--TSMYE---KPS-----IIGQLITEHAKGGKCIVFTQTKRDADRLAH 362 (618)
Q Consensus 318 ------------------~~-------~~~~~--~~~~~---~~~-----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~ 362 (618)
+. .+..+ .+... ... .-...++++ .-.++||||.++..|+.|..
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHH
Confidence 00 00000 00000 001 111223333 23589999999999999999
Q ss_pred HHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCC
Q 007085 363 AMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 363 ~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g 438 (618)
++.+ .+.|..+|++..+.+|++.++.|+..+++.||||+++++||||..+-+||+..+|.+-..|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 9965 488999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEEEech--------------------------------hhHHHHHHHHHHhcCCcccCCccc
Q 007085 439 KKGSAILIYTD--------------------------------QQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 439 ~~g~~~~~~~~--------------------------------~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
+.|.++.++.. ++...+..+++.|++.++++.+-.
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~ 670 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTM 670 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCC
Confidence 88888766432 145667788899999888876533
No 67
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.7e-34 Score=304.67 Aligned_cols=307 Identities=20% Similarity=0.192 Sum_probs=212.5
Q ss_pred CCChHHHHHHHHHHhCC---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|+|||++++..+..+ +..+|++|||+|||++++..+.. + ..++|||||+.+|++||.+++.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 56999999999998753 36899999999999988755432 2 346999999999999999999998
Q ss_pred CC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh--------cCCCCCCcceEEEccchhccCCCcHHHH
Q 007085 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--------~~~~~~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
+. ...+..++++... .......|+|+|++++.....+ ..+.-..|++||+||||++. ...+
T Consensus 322 ~~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 322 STIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred cCCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 63 2334444443221 1122368999999988543211 11233578999999999984 4666
Q ss_pred HHHHHHCCCCCcEEEEEeeCchHHHH--HHHHhcCCCcEEEecc--CCcccccCCeEEEE--------------------
Q 007085 267 EVILERLPQNRQSMMFSATMPPWIRS--LTNKYLKNPLTVDLVG--DSDQKLADGISLYS-------------------- 322 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~~~~~~~--~~~~~l~~~~~i~~~~--~~~~~~~~~~~~~~-------------------- 322 (618)
..++..+. ....|+|||||...... .+..++ .|..+...- -.............
T Consensus 393 r~il~~l~-a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhcC-cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 77777774 45679999999642211 111111 222211100 00000000000000
Q ss_pred ---EeccCCcchHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcC-CccEE
Q 007085 323 ---IATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFNIL 397 (618)
Q Consensus 323 ---~~~~~~~~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~vL 397 (618)
+......|...+..+++.+. .+.++||||.++..++.+++.| .+..+||.+++.+|.++++.|+++ .+++|
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 01122234555556666553 5789999999999998888877 356799999999999999999875 78999
Q ss_pred EEcCccccCCCCCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcceE-------EEEechhhHH
Q 007085 398 IATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSA-------ILIYTDQQAR 453 (618)
Q Consensus 398 VaT~~~~~GlDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~-------~~~~~~~~~~ 453 (618)
|+|+++.+|||+|++++||+++.|. +..+|+||+||++|.+..+.+ +.+++....+
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999999999999999999985 999999999999998765543 6666655443
No 68
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=299.43 Aligned_cols=326 Identities=22% Similarity=0.305 Sum_probs=233.5
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
....|+.||.+.+..++ ++|+||++|||+|||++|...|+.++.. .+..++|+++|++-|+.|+...+..++
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 44569999999999999 9999999999999999998888888754 234789999999999999998888877
Q ss_pred CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCC-CCCcceEEEccchhccCCCcH-HHHHHHHHHCCC
Q 007085 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN-LSEVQFVVLDEADQMLSVGFA-EDVEVILERLPQ 275 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~-~~~~~~vViDEaH~~~~~~~~-~~~~~il~~l~~ 275 (618)
.........++.........+-...+|+|+||+.|.+.+...... +.++.++||||||+-.....+ ..+..++.....
T Consensus 131 ~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 131 IPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred CcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 555666666664444344455566899999999999888775443 588999999999987655444 444466666555
Q ss_pred CCcEEEEEeeCchHHHHHHHHhcC--------------------------------------------------------
Q 007085 276 NRQSMMFSATMPPWIRSLTNKYLK-------------------------------------------------------- 299 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~-------------------------------------------------------- 299 (618)
..|+|+|||||-............
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 669999999996433322211100
Q ss_pred -----CCcEEE---e--ccCC-------ccc--------------------------------------cc---------
Q 007085 300 -----NPLTVD---L--VGDS-------DQK--------------------------------------LA--------- 315 (618)
Q Consensus 300 -----~~~~i~---~--~~~~-------~~~--------------------------------------~~--------- 315 (618)
+...+. + .... ... ..
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 000000 0 0000 000 00
Q ss_pred ----------CCeEEEEE-eccCCcchHHHHHHHHHh---hcCCcEEEEecchhHHHHHHHHHHhc----CCeeee----
Q 007085 316 ----------DGISLYSI-ATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKS----YNCEPL---- 373 (618)
Q Consensus 316 ----------~~~~~~~~-~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~l---- 373 (618)
..+..... ......|...+.+++.+. .+..++||||.+++.|+.|...|.+. ++...+
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 00000000 011223444455554443 34579999999999999999998741 222222
Q ss_pred ----cCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEech
Q 007085 374 ----HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 374 ----hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
..+|++.++.++++.|++|+++|||||+++|+||||+.++.||-||+..++...+||+|| ||+ +.++|+++++.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 247999999999999999999999999999999999999999999999999999999999 998 57899999885
Q ss_pred hhHH
Q 007085 450 QQAR 453 (618)
Q Consensus 450 ~~~~ 453 (618)
.+..
T Consensus 529 ~~~~ 532 (746)
T KOG0354|consen 529 SEVI 532 (746)
T ss_pred hhHH
Confidence 5433
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.1e-33 Score=287.47 Aligned_cols=288 Identities=19% Similarity=0.234 Sum_probs=198.1
Q ss_pred HHHHHHHHHhCCCC--EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC----
Q 007085 125 IQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---- 198 (618)
Q Consensus 125 ~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~---- 198 (618)
||.++++.+.++.+ +++.+|||+|||++|++|++.. ..++++++|+++|++|+++.+++++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 69999999998864 7899999999999999988742 34689999999999999999988762
Q ss_pred --CCceEEEEcCCchH--HH------------------HHHhhcCCCEEEEChHHHHHHHHhcC--------CCCCCcce
Q 007085 199 --SLDTICVYGGTPIS--HQ------------------MRALDYGVDAVVGTPGRVIDLIKRNA--------LNLSEVQF 248 (618)
Q Consensus 199 --~~~~~~~~~~~~~~--~~------------------~~~~~~~~~Ilv~T~~~l~~~l~~~~--------~~~~~~~~ 248 (618)
...+..+.+..... .. .......+.|++|||+.|..++.... ..+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 22333333432211 00 01112357899999999976654321 12478999
Q ss_pred EEEccchhccCCCc-----HHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh--cCCCcEEEeccC-----C------
Q 007085 249 VVLDEADQMLSVGF-----AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGD-----S------ 310 (618)
Q Consensus 249 vViDEaH~~~~~~~-----~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~--l~~~~~i~~~~~-----~------ 310 (618)
|||||+|.+..+.. ......++.......++++||||+++.+...+... +..+... +... .
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEA 227 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhc
Confidence 99999999864331 12333444444446799999999999877777664 3333222 1111 0
Q ss_pred -c-----ccccCCeEEEEEeccCCcchHHHHHHHHHh------hcCCcEEEEecchhHHHHHHHHHHhc---CCeeeecC
Q 007085 311 -D-----QKLADGISLYSIATSMYEKPSIIGQLITEH------AKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHG 375 (618)
Q Consensus 311 -~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg 375 (618)
. ..+...+.+.... ....+...+..+++.. .++.++||||++++.++.+++.|.+. +.+..+|+
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 0 0011123333333 3333444343333322 24579999999999999999999763 56888999
Q ss_pred cCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCC
Q 007085 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435 (618)
Q Consensus 376 ~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~g 435 (618)
.+++.+|.++. +..|||||+++++|||++.+ +|| ++ |.+++.|+||+||+|
T Consensus 307 ~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999987653 78999999999999999876 566 44 889999999999986
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.6e-33 Score=314.03 Aligned_cols=320 Identities=23% Similarity=0.296 Sum_probs=234.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
.++++||.+++..++.. ++||++|||+|||++++++++..+.. .+.++|||+||++|+.||.+.+++++..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 46899999999988886 99999999999999998888877631 2568999999999999999999987642
Q ss_pred --CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
..+..+++......+.. +....+|+|+||+.+...+....+.+.++++|||||||++........+...+....+..
T Consensus 85 ~~~~v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 35666777766554433 344579999999999888877778889999999999999876544444444444455677
Q ss_pred cEEEEEeeCchH---HHHHHHHhcCC------------------CcEEEecc----------------------------
Q 007085 278 QSMMFSATMPPW---IRSLTNKYLKN------------------PLTVDLVG---------------------------- 308 (618)
Q Consensus 278 ~~l~lSAT~~~~---~~~~~~~~l~~------------------~~~i~~~~---------------------------- 308 (618)
++++|||||... +......+... +....+..
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999998422 11111111100 00000000
Q ss_pred ---CCcc------------cccCCeE------------------------------------------------------
Q 007085 309 ---DSDQ------------KLADGIS------------------------------------------------------ 319 (618)
Q Consensus 309 ---~~~~------------~~~~~~~------------------------------------------------------ 319 (618)
.... .+...+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 0000 0000000
Q ss_pred --------------EEEEeccCCcchHHHHHHHHHh---hcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCc-----
Q 007085 320 --------------LYSIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGD----- 376 (618)
Q Consensus 320 --------------~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~----- 376 (618)
..........|...+.+++++. .++.++||||++++.++.+++.|.. .+.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 0000011123455555666553 3568999999999999999999954 4788888876
Q ss_pred ---CCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 377 ---ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 377 ---~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|++.+|.++++.|++++.+|||||+++++|+|+|++++||+||+|+++..|+||+||++|.+. +.+++++...
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999865 6777777543
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.2e-33 Score=297.71 Aligned_cols=314 Identities=21% Similarity=0.227 Sum_probs=233.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~- 198 (618)
..|+++|..+++.++.++ |.++.||+|||++|.+|++..... ++.++||+||++||.|.++++.+++.
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 349999999999999988 999999999999999999987654 67899999999999999999998764
Q ss_pred -CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC-------------------------CCCCCcceEEE
Q 007085 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA-------------------------LNLSEVQFVVL 251 (618)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~-------------------------~~~~~~~~vVi 251 (618)
++.+.+++++.+.. .+.....++|+|+|...| +++|.... .....+.++||
T Consensus 171 lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 171 LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 56778888887643 344456789999999888 55553321 11355789999
Q ss_pred ccchhccC-C-----------------CcHH--------------------------------HHHHHHHH---------
Q 007085 252 DEADQMLS-V-----------------GFAE--------------------------------DVEVILER--------- 272 (618)
Q Consensus 252 DEaH~~~~-~-----------------~~~~--------------------------------~~~~il~~--------- 272 (618)
||+|.++- + .+.. .+++++..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 99997631 0 0000 01111000
Q ss_pred ---------C------CC---------------------------------------------C----------------
Q 007085 273 ---------L------PQ---------------------------------------------N---------------- 276 (618)
Q Consensus 273 ---------l------~~---------------------------------------------~---------------- 276 (618)
+ .. .
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 00 0
Q ss_pred CcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhh-cCCcEEEEecchh
Q 007085 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKR 355 (618)
Q Consensus 277 ~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~lVf~~~~~ 355 (618)
.++.+||||......++...|..++..+..... .... .....+..+..+|...+...++... .+.++||||++++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp---~~r~-~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP---SQRR-HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC---ccce-ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 134568888887777777777766655533211 1111 1222333455667777777776643 4678999999999
Q ss_pred HHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC---Ccc-----EEEEcCCCCChhH
Q 007085 356 DADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LIIHYELPNTSET 426 (618)
Q Consensus 356 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~---~~~-----~VI~~~~p~~~~~ 426 (618)
.++.+++.|.+ .+++..+|+.+. +|++.+..+..+...|+|||++++||+||+ ++. +||+++.|.+...
T Consensus 485 ~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~ 562 (656)
T PRK12898 485 ASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARI 562 (656)
T ss_pred HHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHH
Confidence 99999999976 499999999865 445555566666667999999999999999 665 9999999999999
Q ss_pred HHHHhccCCCCCCcceEEEEechhhH
Q 007085 427 FVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 427 ~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
|.||+||+||.|.+|.++++++..|.
T Consensus 563 y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 563 DRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999997664
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=311.71 Aligned_cols=331 Identities=22% Similarity=0.351 Sum_probs=250.9
Q ss_pred CHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007085 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
...+..+|.+.++..|++||.+|+..+.+++|+||+.+||||||.+|++|+++.+++. ...++|+|.||++||
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------~~a~AL~lYPtnALa 128 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------PSARALLLYPTNALA 128 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC-------cCccEEEEechhhhH
Confidence 4445788888999999999999999999999999999999999999999999999872 234789999999999
Q ss_pred HHHHHHHHHhCCC----CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc----CCCCCCcceEEEccchhcc
Q 007085 187 KQVEKEFHESAPS----LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 187 ~q~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~~~~vViDEaH~~~ 258 (618)
+++.+++.++... +.+...+|.++...+.....+.++||+|||+||...+.+. ...+.++++||+||+|.+-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 9999999887643 4455556666666666788889999999999998755443 2346779999999999875
Q ss_pred CCCcHHHHHHHHHHC-------CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc-----
Q 007085 259 SVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS----- 326 (618)
Q Consensus 259 ~~~~~~~~~~il~~l-------~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~----- 326 (618)
.. |+..+..+++++ +.+.|+|.+|||+.+.- ++...++.......+..+....- ... +.....
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~~~--~~~-~~~~~p~~~~~ 283 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSPRG--LRY-FVRREPPIREL 283 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCCCC--ceE-EEEeCCcchhh
Confidence 54 555555554443 45789999999997653 34444444443332221111111 111 111111
Q ss_pred ----CCcchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHH-----Hhc----CCeeeecCcCCHHHHHHHHHHHhcC
Q 007085 327 ----MYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAM-----AKS----YNCEPLHGDISQSQRERTLSAFRDG 392 (618)
Q Consensus 327 ----~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L-----~~~----~~~~~lhg~~~~~~r~~i~~~f~~g 392 (618)
...+...+..++.. ...+-++|+|+.+++.++.++... ... ..+..+++.+..++|.+++..|++|
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 11223333333332 235779999999999999997322 222 3577889999999999999999999
Q ss_pred CccEEEEcCccccCCCCCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcceEEEEech
Q 007085 393 RFNILIATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 393 ~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
+..++++|++++.||||.+++.||....|. +..++.|+.||+||.++....+++...
T Consensus 364 ~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 999999999999999999999999999999 899999999999999877777766653
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-33 Score=308.80 Aligned_cols=332 Identities=18% Similarity=0.289 Sum_probs=257.4
Q ss_pred HHHHHH-HHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 109 DIVAAL-ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 109 ~l~~~l-~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
++...| ...+...++|-|.++|..++.+++++|.+|||.||+++|++|++-. ...+|||.|..+|++
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 444444 4578999999999999999999999999999999999999998754 558999999999999
Q ss_pred HHHHHHHHhCCCCceEEEEcCCchHHHHHH---hhc---CCCEEEEChHHHHHH--HHhcCCCCCC---cceEEEccchh
Q 007085 188 QVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY---GVDAVVGTPGRVIDL--IKRNALNLSE---VQFVVLDEADQ 256 (618)
Q Consensus 188 q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~Ilv~T~~~l~~~--l~~~~~~~~~---~~~vViDEaH~ 256 (618)
.+...+... .+....+.+.....++... +.. .++|++.||+++... +......+.. +.++||||||+
T Consensus 319 DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 319 DQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 888887443 5777777777776544332 222 489999999998532 1222223444 88999999999
Q ss_pred ccCCC--cHHHHHHH---HHHCCCCCcEEEEEeeCchHHHHHHHHhcC--CCcEEEeccCCcccccCCeEEEEEeccCCc
Q 007085 257 MLSVG--FAEDVEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (618)
Q Consensus 257 ~~~~~--~~~~~~~i---l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (618)
+..|+ |.+....+ ..+. +...+|.+|||.+..++.-+..-+. ++..+.. .....++...........
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-----sfnR~NL~yeV~~k~~~~ 470 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRF-PGVPFIALTATATERVREDVIRSLGLRNPELFKS-----SFNRPNLKYEVSPKTDKD 470 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhC-CCCCeEEeehhccHHHHHHHHHHhCCCCcceecc-----cCCCCCceEEEEeccCcc
Confidence 99886 55555544 3333 3478999999999988877666553 3332211 111122222222222233
Q ss_pred chHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCC
Q 007085 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 330 ~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlD 408 (618)
....+...++...+....||||.++++|+.+...|.+. +.+..+|++|+..+|+.|..+|..++++|+|||=++++|||
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 34444455555567889999999999999999999775 78999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHH
Q 007085 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (618)
Q Consensus 409 i~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 460 (618)
.|+|+.||||..|.+++.|.|.+|||||.|....|++|+...+...++.+..
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988776665543
No 74
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.3e-32 Score=301.69 Aligned_cols=403 Identities=18% Similarity=0.183 Sum_probs=256.4
Q ss_pred chhhhHHHHhhhcchhhHHhhhhhhhccCCCCCCCCCccccccCCcccccccc--ccCCcCccch-----hHHhhhhhcc
Q 007085 12 SFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTREFHA--ISRPLDFKSS-----IAWQHAQSAV 84 (618)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~ 84 (618)
.|.++.++|+..+......+.. + ..+.++.+.++.-..+....+|+.+ ....|++... ..|+......
T Consensus 184 ~~~~a~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~laGlv~lADWi~S~~~~~~Fp~~~~~~~l~~~~~~~~~~a 258 (878)
T PRK09694 184 QDKQAREEWIQALEALFLTPAG----L-SLNDIPPPCSPLLAGFCSVSDWLGSWTTTFTFLFNSPILALRQYFQQRQQDA 258 (878)
T ss_pred ccHHHHHHHHHHHHHHhCCCcc----c-cccccCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcCCHHHHHHHHHHHH
Confidence 4679999999988777543311 1 1123466667778888888999999 7777776321 2344443333
Q ss_pred ccccccCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHH
Q 007085 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164 (618)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~ 164 (618)
.+.+......... ..+ ..+... ......|+|+|+.+.........+||.+|||+|||.++++++...+.+
T Consensus 259 ~~al~~~gl~~~~-~~~------~~~~~~--~~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~- 328 (878)
T PRK09694 259 ARVLELSGLVANK-KPY------GGVHAL--LDNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ- 328 (878)
T ss_pred HHHHHhcCCCCCC-CCc------cchHhh--ccCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-
Confidence 3333221111100 001 111111 123457999999886554445668999999999999987776644322
Q ss_pred hhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH----hCCCCceEEEEcCCchHHHH---------------------HHhh
Q 007085 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE----SAPSLDTICVYGGTPISHQM---------------------RALD 219 (618)
Q Consensus 165 ~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 219 (618)
+....++|..||+++++++++++.+ .++...+.+.++........ .-+.
T Consensus 329 ------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 329 ------GLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred ------CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 2245799999999999999999875 44445566666554321100 0011
Q ss_pred ---c---CCCEEEEChHHHHHHHHh-cCCCCCCc----ceEEEccchhccCCCcHHHHHHHHHHCC-CCCcEEEEEeeCc
Q 007085 220 ---Y---GVDAVVGTPGRVIDLIKR-NALNLSEV----QFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMP 287 (618)
Q Consensus 220 ---~---~~~Ilv~T~~~l~~~l~~-~~~~~~~~----~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~~ 287 (618)
+ -.+|+|||.++++..+.. +...++.+ ++|||||+|.+- ......+..+++.+. ....+|+||||+|
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP 481 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLP 481 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCC
Confidence 1 168999999998754432 22223333 489999999873 334556666666653 4678999999999
Q ss_pred hHHHHHHHHhcCCC---------cEEEeccCC---cccc-------cCC--eEEEEEecc-CCcchHHHHHHHHHhhcCC
Q 007085 288 PWIRSLTNKYLKNP---------LTVDLVGDS---DQKL-------ADG--ISLYSIATS-MYEKPSIIGQLITEHAKGG 345 (618)
Q Consensus 288 ~~~~~~~~~~l~~~---------~~i~~~~~~---~~~~-------~~~--~~~~~~~~~-~~~~~~~l~~~l~~~~~~~ 345 (618)
...+..+...+... ..++..... .... ... +........ ......++..+++....++
T Consensus 482 ~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~ 561 (878)
T PRK09694 482 ATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGA 561 (878)
T ss_pred HHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCC
Confidence 88776544432211 001000000 0000 000 111111001 1222445566666666788
Q ss_pred cEEEEecchhHHHHHHHHHHhc----CCeeeecCcCCHHHHH----HHHHHH-hcCC---ccEEEEcCccccCCCCCCcc
Q 007085 346 KCIVFTQTKRDADRLAHAMAKS----YNCEPLHGDISQSQRE----RTLSAF-RDGR---FNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~lhg~~~~~~r~----~i~~~f-~~g~---~~vLVaT~~~~~GlDi~~~~ 413 (618)
++|||||+++.++.+++.|.+. .++..+|++++..+|. ++++.| ++++ ..|||||+++|+|||| +++
T Consensus 562 ~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~D 640 (878)
T PRK09694 562 QVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFD 640 (878)
T ss_pred EEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCC
Confidence 9999999999999999999764 4689999999999994 567777 5565 4799999999999999 689
Q ss_pred EEEEcCCCCChhHHHHHhccCCCCCC
Q 007085 414 LIIHYELPNTSETFVHRTGRTGRAGK 439 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~ 439 (618)
+||...+| ++.++||+||++|.+.
T Consensus 641 vlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 641 WLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEECCCC--HHHHHHHHhccCCCCC
Confidence 99998888 6789999999999864
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-33 Score=272.39 Aligned_cols=330 Identities=18% Similarity=0.275 Sum_probs=237.0
Q ss_pred HHHHHHH-cCCCC-ChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007085 110 IVAALAR-RGISK-LFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 110 l~~~l~~-~~~~~-l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
+.++|++ +++.. -++.|++|+..+.++ +|+.|++|||+||+++|.+|.|.+ +..+||+.|..+|.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHHH
Confidence 4455544 34333 378999999988765 789999999999999999998865 45899999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh------cCCCEEEEChHHHHHH----HHhcCCCCCCcceEEEccchh
Q 007085 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVIDL----IKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 187 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ilv~T~~~l~~~----l~~~~~~~~~~~~vViDEaH~ 256 (618)
..+.+.|.++- +.+..+....+..++.+.+. ....+|+.||++.... +.+....-.-+.++|+||||+
T Consensus 75 kDQiDHL~~LK--Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 75 KDQIDHLKRLK--VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHHHHHhcC--CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 99999988763 33444444444444433322 3478999999986322 222223344578999999999
Q ss_pred ccCCC--cHHHHHHH---HHHCCCCCcEEEEEeeCchHHHHHHHHh--cCCCcEEEeccCCcccccCCeEEEEEeccCCc
Q 007085 257 MLSVG--FAEDVEVI---LERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (618)
Q Consensus 257 ~~~~~--~~~~~~~i---l~~l~~~~~~l~lSAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (618)
+..|+ |.+....+ ...+ +....|.+|||..+.+.+.+..- +.+|..+--.+.....+...+... ....+
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K---~~I~D 228 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMK---SFITD 228 (641)
T ss_pred HhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHH---HHhhh
Confidence 99886 55554443 3333 57789999999999887755433 344544321111111111110000 00011
Q ss_pred chHHHHHH-HHHhh---------c--CCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcCCHHHHHHHHHHHhcCCccE
Q 007085 330 KPSIIGQL-ITEHA---------K--GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (618)
Q Consensus 330 ~~~~l~~~-l~~~~---------~--~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~v 396 (618)
....|.+. ...+. + .+.-||||.|+++|+.++-.|. ..+++..+|.++...+|.++.+.|.+++..|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 11111111 11111 1 2567999999999999999985 4599999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHH
Q 007085 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457 (618)
Q Consensus 397 LVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 457 (618)
|+||..+.+|+|-|++++|||++.|.|+.-|.|..||+||.|++.+|-++|..+|...+.-
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~F 369 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNF 369 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888765543
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.2e-32 Score=292.37 Aligned_cols=316 Identities=17% Similarity=0.253 Sum_probs=222.9
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+. .|+++|..++..+..++ |+++.||+|||++|++|++...+. +..++|++||++||.|.++++..++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 44 59999999998888765 999999999999999999866654 7789999999999999999999877
Q ss_pred C--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhccCC--------
Q 007085 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV-------- 260 (618)
Q Consensus 198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~~~-------- 260 (618)
. ++.+.++.++.+...+.+ ....++|+|+||..| .+++.... ..+..+.++||||||+++=.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 5 466778888877333222 235689999999998 55554422 24678999999999987411
Q ss_pred --------CcHHHHHHHHHHCCCC--------CcEEEEEee---------------------------------------
Q 007085 261 --------GFAEDVEVILERLPQN--------RQSMMFSAT--------------------------------------- 285 (618)
Q Consensus 261 --------~~~~~~~~il~~l~~~--------~~~l~lSAT--------------------------------------- 285 (618)
.....+..+...+... .+.+.+|..
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 1233333444444321 122222221
Q ss_pred ----------------------------------------------------------------------CchHHHHHHH
Q 007085 286 ----------------------------------------------------------------------MPPWIRSLTN 295 (618)
Q Consensus 286 ----------------------------------------------------------------------~~~~~~~~~~ 295 (618)
......++..
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~ 382 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH
Confidence 1111111100
Q ss_pred HhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHh-cCCeeee
Q 007085 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
.| +...+. ++...+....... ..+......|...+...+.. +..+.++||||++++.++.+++.|.+ .+++..+
T Consensus 383 ~Y--~l~v~~-IPt~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 383 VY--NMEVVQ-IPTNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred Hh--CCcEEE-CCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 00 000000 0111110111111 11223334566666666554 35678999999999999999999976 5999999
Q ss_pred cCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC---CCcc-----EEEEcCCCCChhHHHHHhccCCCCCCcceEEE
Q 007085 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV---PNVD-----LIIHYELPNTSETFVHRTGRTGRAGKKGSAIL 445 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi---~~~~-----~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~ 445 (618)
|+.+.+.++..+...++.+ .|+|||++++||+|| +.+. +||+++.|.+...|.||+||+||.|++|.+++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 9999988888777777665 699999999999999 6898 99999999999999999999999999999999
Q ss_pred EechhhH
Q 007085 446 IYTDQQA 452 (618)
Q Consensus 446 ~~~~~~~ 452 (618)
+++..|.
T Consensus 537 ~is~eD~ 543 (790)
T PRK09200 537 FISLEDD 543 (790)
T ss_pred EEcchHH
Confidence 9987654
No 77
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=7.1e-32 Score=308.67 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=212.4
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
.++.+.+.+.....|+++|+.+++.++.++++++++|||+|||+ |.++++..+.. .++++|||+||++|+.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHH
Confidence 45666676656667999999999999999999999999999997 55666555432 2678999999999999
Q ss_pred HHHHHHHHhCCCC--ceE---EEEcCCchHHHHH---Hhh-cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 188 QVEKEFHESAPSL--DTI---CVYGGTPISHQMR---ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 188 q~~~~l~~~~~~~--~~~---~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
|+++.+.+++... .+. +++++.+...+.. .+. ..++|||+||++|.+.+.. +.. +++++||||||+|+
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhh
Confidence 9999999987533 222 3567776655432 233 3589999999999887765 222 89999999999998
Q ss_pred C-----------CCcHHH-HHHHH----------------------HHCCCCCc--EEEEEeeC-chHHHHHHHHhcCCC
Q 007085 259 S-----------VGFAED-VEVIL----------------------ERLPQNRQ--SMMFSATM-PPWIRSLTNKYLKNP 301 (618)
Q Consensus 259 ~-----------~~~~~~-~~~il----------------------~~l~~~~~--~l~lSAT~-~~~~~~~~~~~l~~~ 301 (618)
+ ++|.++ +..++ ..++...| ++++|||+ |..+.. .++.++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 7 456553 44432 23444555 56789994 544332 234444
Q ss_pred cEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecch---hHHHHHHHHHHhc-CCeeeecCcC
Q 007085 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK---RDADRLAHAMAKS-YNCEPLHGDI 377 (618)
Q Consensus 302 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~---~~~~~l~~~L~~~-~~~~~lhg~~ 377 (618)
..+.+... ......+.+...... .+...+..+++.. +.++||||+++ +.++.+++.|.+. +++..+|+++
T Consensus 290 l~~~v~~~--~~~~r~I~~~~~~~~--~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 290 LGFEVGGG--SDTLRNVVDVYVEDE--DLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred cceEecCc--cccccceEEEEEecc--cHHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 44443221 122333444433322 2244566666654 35799999999 9999999999764 8999999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEE----cCccccCCCCCC-ccEEEEcCCCC
Q 007085 378 SQSQRERTLSAFRDGRFNILIA----TDVAARGLDVPN-VDLIIHYELPN 422 (618)
Q Consensus 378 ~~~~r~~i~~~f~~g~~~vLVa----T~~~~~GlDi~~-~~~VI~~~~p~ 422 (618)
++ .+++.|++|+++|||| |++++||||+|+ +++||+|++|.
T Consensus 364 ~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 364 PK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 73 6899999999999999 489999999999 89999999996
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1e-31 Score=288.20 Aligned_cols=316 Identities=19% Similarity=0.260 Sum_probs=212.8
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-- 198 (618)
.++|+|.+++..+...+..|++++||+|||++|++|++...+. +..++||+|+++||.|+++++..++.
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 3566666676666655668999999999999999998766543 45699999999999999999987664
Q ss_pred CCceEEEEcCCc---hHHHHHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCcceEEEccchhccCC--------
Q 007085 199 SLDTICVYGGTP---ISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV-------- 260 (618)
Q Consensus 199 ~~~~~~~~~~~~---~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~~~-------- 260 (618)
++.+.+++.+.. .....+.....++|+++||++| .+++... ...+..+.++||||||.++-.
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 344555554421 2222333446799999999999 5555332 234678999999999988421
Q ss_pred --------CcHHHHHHHHHHCCCC--------CcEEEEEe----------------------------------------
Q 007085 261 --------GFAEDVEVILERLPQN--------RQSMMFSA---------------------------------------- 284 (618)
Q Consensus 261 --------~~~~~~~~il~~l~~~--------~~~l~lSA---------------------------------------- 284 (618)
.....+..+...+... .+.+.+|-
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 1223333444444321 12222222
Q ss_pred ---------------------------------------------------------------------eCchHHHHHHH
Q 007085 285 ---------------------------------------------------------------------TMPPWIRSLTN 295 (618)
Q Consensus 285 ---------------------------------------------------------------------T~~~~~~~~~~ 295 (618)
|......++..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 11111111111
Q ss_pred HhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHh-cCCeeee
Q 007085 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
.| +...+. ++...+....... ..+......|...+...+.+ +..+.++||||++++.++.+.+.|.+ .+++..+
T Consensus 379 iY--~l~v~~-IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L 454 (762)
T TIGR03714 379 TY--SLSVVK-IPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL 454 (762)
T ss_pred Hh--CCCEEE-cCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 00 000000 0000000000000 11223334455555555543 45688999999999999999999966 4999999
Q ss_pred cCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC---------CccEEEEcCCCCChhHHHHHhccCCCCCCcceEE
Q 007085 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI 444 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~---------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~ 444 (618)
|+.+.+.++..+...++.+ .|+|||++++||+||+ .+.+|+++++|....+ .||+||+||.|.+|.++
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 9999998887777766666 6999999999999999 8999999999998777 99999999999999999
Q ss_pred EEechhhH
Q 007085 445 LIYTDQQA 452 (618)
Q Consensus 445 ~~~~~~~~ 452 (618)
+|++..|.
T Consensus 532 ~~is~eD~ 539 (762)
T TIGR03714 532 FFVSLEDD 539 (762)
T ss_pred EEEccchh
Confidence 99987654
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.7e-31 Score=284.58 Aligned_cols=313 Identities=20% Similarity=0.238 Sum_probs=223.6
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
.|++.|..+...+..++ |++++||+|||++|.+|++...+. +..++||+||++||.|.++++.+++..
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 48888888888777654 999999999999999999655443 557999999999999999999998864
Q ss_pred -CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCcceEEEccchhccCC-C---------
Q 007085 200 -LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV-G--------- 261 (618)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~~~-~--------- 261 (618)
+.+.+++++.+...+... ..++|+|+||.+| ++++... .+.+..+.++||||+|+++-. .
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 667788888776544443 3489999999999 8887665 245788999999999987420 0
Q ss_pred ------cHHHHHHHHHHCCCC--------C--------------------------------------------------
Q 007085 262 ------FAEDVEVILERLPQN--------R-------------------------------------------------- 277 (618)
Q Consensus 262 ------~~~~~~~il~~l~~~--------~-------------------------------------------------- 277 (618)
.......+...+..+ .
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 011111111111100 0
Q ss_pred -----------------------------------------------------------cEEEEEeeCchHHHHHHHHhc
Q 007085 278 -----------------------------------------------------------QSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 278 -----------------------------------------------------------~~l~lSAT~~~~~~~~~~~~l 298 (618)
++.+||.|......++...|-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 122334443332222222221
Q ss_pred CCCcEEEeccCCcccccCCeEEEEEeccCCcchHHH-HHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCc
Q 007085 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGD 376 (618)
Q Consensus 299 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~ 376 (618)
.+ .+. ++...+......... +..+..+|...+ ..+.+.+.++.++||||++++.++.+.+.|.+ .+++..+|+.
T Consensus 363 l~--vv~-IPtnkp~~R~d~~d~-i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 363 LE--VVV-VPTNRPVIRKDLSDL-VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred CC--EEE-eCCCCCeeeeeCCCe-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 11 111 111111111111111 112223344343 44555567789999999999999999999976 5899999998
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC-------ccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEech
Q 007085 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN-------VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~-------~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
+.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.+...|.|++||+||.|.+|.+.++++.
T Consensus 439 --q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~ 516 (745)
T TIGR00963 439 --NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSL 516 (745)
T ss_pred --hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEec
Confidence 889999999999999999999999999999998 55999999999999999999999999999999999987
Q ss_pred hhH
Q 007085 450 QQA 452 (618)
Q Consensus 450 ~~~ 452 (618)
.|.
T Consensus 517 eD~ 519 (745)
T TIGR00963 517 EDN 519 (745)
T ss_pred cHH
Confidence 764
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.4e-31 Score=295.49 Aligned_cols=333 Identities=16% Similarity=0.186 Sum_probs=216.8
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|.|||.+++..++.. ..+|+.+++|.|||+.+.+.+...+.. +...++|||||. .|..||..++.+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 34899999999887654 469999999999999886665554433 234579999996 89999999998766
Q ss_pred CCCceEEEEcCCchHHHHH--HhhcCCCEEEEChHHHHHHHH-hcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHC
Q 007085 198 PSLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL 273 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Ilv~T~~~l~~~l~-~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l 273 (618)
. +...++........... ..-...+++|+|++.+...-. ...+.-.+|++|||||||++.... ......+.+..+
T Consensus 223 ~-l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 223 N-LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred C-CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 3 44443332221111000 011236899999998865221 122334579999999999986321 111123333333
Q ss_pred -CCCCcEEEEEeeCch-HHH------------------HHH-------------H-----------------HhcCCCc-
Q 007085 274 -PQNRQSMMFSATMPP-WIR------------------SLT-------------N-----------------KYLKNPL- 302 (618)
Q Consensus 274 -~~~~~~l~lSAT~~~-~~~------------------~~~-------------~-----------------~~l~~~~- 302 (618)
.....+|++||||.. ... .+. . .++.+..
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 235678999999841 000 000 0 0000000
Q ss_pred ----------------------------------EEEeccCCccccc-CCeEEEEEe-----------------------
Q 007085 303 ----------------------------------TVDLVGDSDQKLA-DGISLYSIA----------------------- 324 (618)
Q Consensus 303 ----------------------------------~i~~~~~~~~~~~-~~~~~~~~~----------------------- 324 (618)
.++.......... .....+.+.
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 0000000000000 000000000
Q ss_pred -------------ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh--cCCeeeecCcCCHHHHHHHHHHH
Q 007085 325 -------------TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAF 389 (618)
Q Consensus 325 -------------~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f 389 (618)
...+.|...+..+++.+ ...|+||||+++..++.+++.|.+ .+++..+||+|++.+|+++++.|
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 01122444555555544 367999999999999999999953 58899999999999999999999
Q ss_pred hcC--CccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHh
Q 007085 390 RDG--RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDV 462 (618)
Q Consensus 390 ~~g--~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 462 (618)
+++ .+.|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+.+++...+....+.|.+.+
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 984 5999999999999999999999999999999999999999999999998877766544433333343333
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.9e-31 Score=298.38 Aligned_cols=303 Identities=22% Similarity=0.347 Sum_probs=208.8
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH----HHHHHHHHHHHHhC-
Q 007085 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR----ELAKQVEKEFHESA- 197 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~----~La~q~~~~l~~~~- 197 (618)
..+..+.++.+..++.++|+++||||||+ ++|.+.... ..+....+++..|.+ +||.++++++...+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL------GRGVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 45556777777788889999999999998 466432211 112233566667854 77777777776422
Q ss_pred CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch-hccCCCcHHH-HHHHHHHCCC
Q 007085 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQ 275 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH-~~~~~~~~~~-~~~il~~l~~ 275 (618)
..+...+ ... ......++|+|+|+++|++.+....+ +.++++||||||| ++++.+|... +..++.. .+
T Consensus 148 ~~VGY~v-----rf~---~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rp 217 (1294)
T PRK11131 148 GCVGYKV-----RFN---DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RP 217 (1294)
T ss_pred ceeceee-----cCc---cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CC
Confidence 1111111 000 11234689999999999998886654 8999999999999 6788777643 3333322 35
Q ss_pred CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCc---chHHHHHHHH---Hh--hcCCcE
Q 007085 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---KPSIIGQLIT---EH--AKGGKC 347 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~---~~--~~~~~~ 347 (618)
+.|+|+||||++. ..+.. ++.+...+.+.... ..++.++....... +.+.+..++. .+ ...+.+
T Consensus 218 dlKvILmSATid~--e~fs~-~F~~apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSR-HFNNAPIIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CceEEEeeCCCCH--HHHHH-HcCCCCEEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 7899999999975 34444 44444445442221 12333333322211 2233333322 11 245789
Q ss_pred EEEecchhHHHHHHHHHHhc-C---CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcC----
Q 007085 348 IVFTQTKRDADRLAHAMAKS-Y---NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE---- 419 (618)
Q Consensus 348 lVf~~~~~~~~~l~~~L~~~-~---~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~---- 419 (618)
||||++..+++.+++.|.+. + .+..+|+++++++|.++++. .+..+|||||+++++|||||++++||+++
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999763 3 36789999999999999886 47889999999999999999999999985
Q ss_pred -----------CC---CChhHHHHHhccCCCCCCcceEEEEechhhHHH
Q 007085 420 -----------LP---NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 420 -----------~p---~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
+| .+.++|.||+||+||. .+|.|+.++++.+...
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 23 3557899999999999 7999999999876543
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=284.55 Aligned_cols=332 Identities=20% Similarity=0.273 Sum_probs=238.8
Q ss_pred cCCCCChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc-CCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 117 RGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~-~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+++..+..+|.+++|.+.+ +.|+||+||||+|||.+|++.|+..+.++.... -..+..++++|+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4677889999999998875 579999999999999999999999987622221 12346799999999999999999998
Q ss_pred HhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC---CCCCCcceEEEccchhccCCCcHHHHHHH
Q 007085 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 195 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~~~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+.+. ++.+.-++|+....... -..++|||+||+++.-..++.. ..+..+.+|||||+|.+-+. .++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 8877 66777788887755544 2347999999999853333221 23667899999999977655 77777777
Q ss_pred HHHCC-------CCCcEEEEEeeCchHHHHHHHHhcCCCc--EEEeccCCcccccCCeEEEEEeccCC---cc-----hH
Q 007085 270 LERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPL--TVDLVGDSDQKLADGISLYSIATSMY---EK-----PS 332 (618)
Q Consensus 270 l~~l~-------~~~~~l~lSAT~~~~~~~~~~~~l~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~ 332 (618)
+.+.. ...++|++|||+|+. .....|+.-+. .+-......... .+.+..+-.... .+ ..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPv--pL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPV--PLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeeccccccc--ceeeeEEeeecccchhhhhhHHHH
Confidence 76653 567899999999984 33444554331 111111111111 111111111111 11 12
Q ss_pred HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc------------------------CCeeeecCcCCHHHHHHHHHH
Q 007085 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS------------------------YNCEPLHGDISQSQRERTLSA 388 (618)
Q Consensus 333 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------~~~~~lhg~~~~~~r~~i~~~ 388 (618)
....+++.+..+++++|||.++......++.|.+. .....+|++|..++|..+.+.
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 23445556678999999999999998888887541 124567999999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCccEEE----EcCCCC------ChhHHHHHhccCCCC--CCcceEEEEechhhHHHHH
Q 007085 389 FRDGRFNILIATDVAARGLDVPNVDLII----HYELPN------TSETFVHRTGRTGRA--GKKGSAILIYTDQQARQVK 456 (618)
Q Consensus 389 f~~g~~~vLVaT~~~~~GlDi~~~~~VI----~~~~p~------~~~~~~Qr~GR~gR~--g~~g~~~~~~~~~~~~~~~ 456 (618)
|..|.++||+||..++.|+|+|+--++| .||... ++-+.+|..|||||. ...|.++++.+.+....+.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999998654444 244433 567789999999995 5778888888776554444
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=7.1e-32 Score=256.25 Aligned_cols=339 Identities=19% Similarity=0.306 Sum_probs=255.6
Q ss_pred ccCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 101 ISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 101 ~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
-++++++.+..+.|+. +..+.++|.|..+|+..+.+.++++..|||-||+++|.+|++.. ...+||+
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi 140 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVI 140 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEee
Confidence 3467888899888854 67788999999999999999999999999999999999999865 5679999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHH---HHHhh---cCCCEEEEChHHHHH---HHH--hcCCCCCCcce
Q 007085 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ---MRALD---YGVDAVVGTPGRVID---LIK--RNALNLSEVQF 248 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~Ilv~T~~~l~~---~l~--~~~~~~~~~~~ 248 (618)
||..+|++.+.-.++.+. +....+....+.... ...+. ....+|+.||+.+.. ++. ...+....+.+
T Consensus 141 ~plislmedqil~lkqlg--i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLG--IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred chhHHHHHHHHHHHHHhC--cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 999999999999998874 444444444433222 11222 247899999999853 221 13455778999
Q ss_pred EEEccchhccCCC--cHHHHH--HHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEe
Q 007085 249 VVLDEADQMLSVG--FAEDVE--VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324 (618)
Q Consensus 249 vViDEaH~~~~~~--~~~~~~--~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 324 (618)
|.|||+|+...|+ |.+.+. .++.+--+...+|.+|||..+.+.......+.-....+..... .+.....+....+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f-nr~nl~yev~qkp 297 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF-NRPNLKYEVRQKP 297 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc-CCCCceeEeeeCC
Confidence 9999999998875 444433 3445444688899999999988777776665432222221110 0011111112222
Q ss_pred ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcc
Q 007085 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 325 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
...++-.+-+..+++....+..-||||.+.+.++.++..|... +....+|..|.+++|.-+-..|..|++.|+|||-++
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 2222233334444444455778899999999999999999764 888999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCChhHHHH-------------------------------------------HhccCCCCCCc
Q 007085 404 ARGLDVPNVDLIIHYELPNTSETFVH-------------------------------------------RTGRTGRAGKK 440 (618)
Q Consensus 404 ~~GlDi~~~~~VI~~~~p~~~~~~~Q-------------------------------------------r~GR~gR~g~~ 440 (618)
.+|||-|++++|||..+|.+++.|.| ..||+||.+.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 67999999999
Q ss_pred ceEEEEechhhHHH
Q 007085 441 GSAILIYTDQQARQ 454 (618)
Q Consensus 441 g~~~~~~~~~~~~~ 454 (618)
..|+++|--.+...
T Consensus 458 a~cilyy~~~difk 471 (695)
T KOG0353|consen 458 ADCILYYGFADIFK 471 (695)
T ss_pred ccEEEEechHHHHh
Confidence 99999997665433
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.6e-30 Score=284.04 Aligned_cols=312 Identities=20% Similarity=0.266 Sum_probs=220.8
Q ss_pred CCCChHHHHHHHHHHhCC---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 119 ISKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
...|+++|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+++.+++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 346999999999999874 789999999999999998887776643 67899999999999999999998
Q ss_pred hCCCCceEEEEcCCchHHHHHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc------HHH
Q 007085 196 SAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF------AED 265 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~------~~~ 265 (618)
.+. ..+..++++.+..++.+. ....++|||+|+..+. ..+.++++|||||+|....... ...
T Consensus 213 ~fg-~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 213 RFG-APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred HhC-CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 774 678888888776544332 2345899999998764 3478999999999997643221 112
Q ss_pred HHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc------CCcchHHHHHHHH
Q 007085 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS------MYEKPSIIGQLIT 339 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~ 339 (618)
+ .++.....+.++|++||||+.+....+.. .....+.+...........+........ ..-...++..+.+
T Consensus 285 v-a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 L-AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred H-HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2 22333456889999999988655444321 1112222211111111111111111000 0011234444555
Q ss_pred HhhcCCcEEEEecchh------------------------------------------------------------HHHH
Q 007085 340 EHAKGGKCIVFTQTKR------------------------------------------------------------DADR 359 (618)
Q Consensus 340 ~~~~~~~~lVf~~~~~------------------------------------------------------------~~~~ 359 (618)
....++++|||++++. -++.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 5566779999987531 3467
Q ss_pred HHHHHHhc---CCeeeecCcCCH--HHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC------------
Q 007085 360 LAHAMAKS---YNCEPLHGDISQ--SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------ 422 (618)
Q Consensus 360 l~~~L~~~---~~~~~lhg~~~~--~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~------------ 422 (618)
+++.|.+. .++..+|+++.+ .+++++++.|++++.+|||+|+++++|+|+|++++|+++|++.
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 77777663 578889999874 5788999999999999999999999999999999997766553
Q ss_pred ChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 423 TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 423 ~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
....|+|++||+||.++.|.+++.....
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 2367899999999999999999776544
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=6.7e-31 Score=275.45 Aligned_cols=296 Identities=23% Similarity=0.314 Sum_probs=203.7
Q ss_pred CCChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|++||++++..+.+ .+..+++.|||+|||++++..+... ...+|||||+++|+.||++.+.+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHH
Confidence 4599999999999998 7889999999999999886555443 33499999999999999988888
Q ss_pred hCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCC
Q 007085 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
.+........+++..... .. ..|+|+|.+.+........+....+++||+||||++... ....+...+..
T Consensus 103 ~~~~~~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~~~ 172 (442)
T COG1061 103 FLLLNDEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELLSA 172 (442)
T ss_pred hcCCccccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhhhc
Confidence 765332333344333111 11 469999999997642112233457999999999998543 34444555543
Q ss_pred CCcEEEEEeeCchHHHHHHHHhc--CCCcEEEeccCC--cccccCCeEEEEEe---------------------------
Q 007085 276 NRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDS--DQKLADGISLYSIA--------------------------- 324 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l--~~~~~i~~~~~~--~~~~~~~~~~~~~~--------------------------- 324 (618)
...+|+|||||+.........++ ..+..+...... ..........+.+.
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 33399999998743211111111 111122110000 00000001111000
Q ss_pred -----------ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcCC
Q 007085 325 -----------TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 325 -----------~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
.....+...+..++..+..+.+++|||.++.+++.++..+...--+..+.+..+..+|..+++.|+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCC
Confidence 111112222333333332467999999999999999999975422889999999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC
Q 007085 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 394 ~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
+++||++.++.+|+|+|+++++|...+..+...|+||+||+.|.
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999993
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=5.6e-29 Score=263.92 Aligned_cols=289 Identities=22% Similarity=0.274 Sum_probs=198.5
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH--
Q 007085 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA-- 217 (618)
Q Consensus 140 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 217 (618)
|+.++||||||.+|+..+...+.+ +.++||++|+++|+.|+++.+++.+. ..+.++++..+..++.+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---------g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---------GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHH
Confidence 578999999999997666555433 66899999999999999999998774 567778887765544332
Q ss_pred --hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-----c-HHHHHHHHHHCCCCCcEEEEEeeCchH
Q 007085 218 --LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVEVILERLPQNRQSMMFSATMPPW 289 (618)
Q Consensus 218 --~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-----~-~~~~~~il~~l~~~~~~l~lSAT~~~~ 289 (618)
....++|||+|+..+. ..+.++++|||||+|....++ + ...+.... ....+.++|++||||+.+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCCHH
Confidence 2345899999998764 347889999999999865322 1 12222233 333588999999998865
Q ss_pred HHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccC---CcchHHHHHHHHHhhcCCcEEEEecchhH----------
Q 007085 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM---YEKPSIIGQLITEHAKGGKCIVFTQTKRD---------- 356 (618)
Q Consensus 290 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~lVf~~~~~~---------- 356 (618)
....+.. .....+.+...........+......... .-...++..+.+...+++++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 4443321 11111211111111111112211111110 01123444555556677899999776532
Q ss_pred --------------------------------------------------HHHHHHHHHhc---CCeeeecCcCCHHHH-
Q 007085 357 --------------------------------------------------ADRLAHAMAKS---YNCEPLHGDISQSQR- 382 (618)
Q Consensus 357 --------------------------------------------------~~~l~~~L~~~---~~~~~lhg~~~~~~r- 382 (618)
.+++++.|.+. .++..+|++++..++
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 47778888764 468889999987766
Q ss_pred -HHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC------------ChhHHHHHhccCCCCCCcceEEEEec
Q 007085 383 -ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------TSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 383 -~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~------------~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
+++++.|++|+.+|||+|+++++|+|+|++++|+++|.+. ....|+|++||+||.++.|.+++...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999987655542 24678999999999999999986553
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.9e-29 Score=282.42 Aligned_cols=305 Identities=21% Similarity=0.327 Sum_probs=210.7
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CCce
Q 007085 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDT 202 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~ 202 (618)
.+..+.+..+..++.+||+++||||||+. +|.+..-. ..+...+++++.|.+.-|..+++.+.+... .+..
T Consensus 70 ~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~------~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~ 141 (1283)
T TIGR01967 70 AKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLEL------GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGE 141 (1283)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHc------CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcce
Confidence 34456677777778899999999999983 45432211 112234677888999888888877766542 2222
Q ss_pred EEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch-hccCCCcHHH-HHHHHHHCCCCCcEE
Q 007085 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQSM 280 (618)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH-~~~~~~~~~~-~~~il~~l~~~~~~l 280 (618)
.+-+. ..... .......|+|+|++.|++.+..... +.++++|||||+| +.++.++... +..++.. .++.++|
T Consensus 142 ~VGY~-vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlI 215 (1283)
T TIGR01967 142 KVGYK-VRFHD---QVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKII 215 (1283)
T ss_pred EEeeE-EcCCc---ccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEE
Confidence 22111 11011 1234578999999999998876554 8899999999999 6888777654 4555443 4688999
Q ss_pred EEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccC------CcchHHHHHHHHHh--hcCCcEEEEec
Q 007085 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM------YEKPSIIGQLITEH--AKGGKCIVFTQ 352 (618)
Q Consensus 281 ~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~--~~~~~~lVf~~ 352 (618)
+||||++. ..+.. ++.+...+.+.... ..+...+..... ..+...+...+... ...+.+|||++
T Consensus 216 lmSATld~--~~fa~-~F~~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLp 287 (1283)
T TIGR01967 216 ITSATIDP--ERFSR-HFNNAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLP 287 (1283)
T ss_pred EEeCCcCH--HHHHH-HhcCCCEEEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence 99999975 34444 44444444432221 112222222211 11222233333322 13578999999
Q ss_pred chhHHHHHHHHHHhc----CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCC-------
Q 007085 353 TKRDADRLAHAMAKS----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP------- 421 (618)
Q Consensus 353 ~~~~~~~l~~~L~~~----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p------- 421 (618)
+..+++.+++.|.+. +.+..+||.+++++|+++++.+ +..+|||||+++++|||||++++||+++.+
T Consensus 288 g~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 288 GEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 999999999999753 4578899999999999987654 347899999999999999999999998843
Q ss_pred -----------CChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 422 -----------NTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 422 -----------~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
.|.++|.||.||+||.+ +|.|+.+++..+..
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 25679999999999996 99999999987654
No 88
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=3.6e-28 Score=270.95 Aligned_cols=315 Identities=20% Similarity=0.263 Sum_probs=218.5
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|++||.+++.++. .+.+.|++.+||.|||++++.. +..+... .+....+|||||. ++..||.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 58999999999886 4678999999999999977443 3333321 1223468999995 7889999999999
Q ss_pred CCCCceEEEEcCCchHHHHHH---hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC
Q 007085 197 APSLDTICVYGGTPISHQMRA---LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
++.+.++.+++.......... ....++|+|+|++.+..... .+.-..|++|||||||++.+. ...+...+..+
T Consensus 242 ~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 242 CPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 998888888776543322211 12358999999999976433 233457899999999999774 34555666666
Q ss_pred CCCCcEEEEEeeCch-HHHHHHHH--hc--------------------------------------------------CC
Q 007085 274 PQNRQSMMFSATMPP-WIRSLTNK--YL--------------------------------------------------KN 300 (618)
Q Consensus 274 ~~~~~~l~lSAT~~~-~~~~~~~~--~l--------------------------------------------------~~ 300 (618)
. ....+++|+||.. .+.++... |+ ..
T Consensus 318 ~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 S-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred h-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 5 4456899999842 11111110 00 00
Q ss_pred CcEEEe-ccCCc--cc---------------------cc---------CCeEE----------E---EEeccCCcchHHH
Q 007085 301 PLTVDL-VGDSD--QK---------------------LA---------DGISL----------Y---SIATSMYEKPSII 334 (618)
Q Consensus 301 ~~~i~~-~~~~~--~~---------------------~~---------~~~~~----------~---~~~~~~~~~~~~l 334 (618)
.....+ +.-.. .. +. ..... + ........|..++
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 000000 00000 00 00 00000 0 0001112345555
Q ss_pred HHHHHHhh-cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcC---CccEEEEcCccccCCCC
Q 007085 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG---RFNILIATDVAARGLDV 409 (618)
Q Consensus 335 ~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g---~~~vLVaT~~~~~GlDi 409 (618)
..++..+. .+.++|||+.....++.|.++|.. .+.+..|||.++..+|..+++.|++. ...+|++|.+.+.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 55555543 467999999999999999999864 48999999999999999999999763 34678999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
+.+++||+||+|||+....|+++|++|.|++..|.++.
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999887766554
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=2.7e-28 Score=231.81 Aligned_cols=200 Identities=44% Similarity=0.774 Sum_probs=177.9
Q ss_pred ccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007085 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 101 ~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (618)
|+++.+++.+.+.|...++..|+++|.++++.+.+++++++.+|||+|||++|+++++..+.... ...+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 57889999999999999999999999999999999999999999999999999999998876632 12367899999
Q ss_pred CcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 181 Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
|+++|+.|+.+.+.++.. .+.+..++++.........+...++|+|+||+.|.+.+.+....+.+++++|+||+|.+.
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 999999999999988754 466677788888777777776689999999999999998887888999999999999998
Q ss_pred CCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEE
Q 007085 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (618)
Q Consensus 259 ~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i 304 (618)
+..+...+..++..++..++++++|||+++.+..+...++.++..+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8888999999999999999999999999999999999998887665
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.3e-27 Score=222.61 Aligned_cols=304 Identities=19% Similarity=0.276 Sum_probs=213.4
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+|+|.|+.+-+.++ +.+++||.|-||+|||... .+.++.+++ .+..+.+..|+...+..++.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 48999998866544 5678999999999999854 444455444 2788999999999999999999999
Q ss_pred CCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCC
Q 007085 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
|++.++.+++++.....+ ..++|+|..+|+++-+ .++++||||+|.+.-..-......+-+..+..
T Consensus 168 F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 168 FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 999999999988774332 5799999998888643 57889999999874332222233344445567
Q ss_pred CcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCc-----c-hHHHHHHHHH-hhcCCcEEE
Q 007085 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----K-PSIIGQLITE-HAKGGKCIV 349 (618)
Q Consensus 277 ~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~l~~-~~~~~~~lV 349 (618)
--+|+||||+++.++..+..- +...+.+...........-...+. ..... | ...+...++. ...+.++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~-~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWI-GNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEe-ccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 789999999998655543321 111122111111111111111111 11111 1 1234444444 445789999
Q ss_pred EecchhHHHHHHHHHHhcCC---eeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCC--CCh
Q 007085 350 FTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP--NTS 424 (618)
Q Consensus 350 f~~~~~~~~~l~~~L~~~~~---~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p--~~~ 424 (618)
|+++++..+.+++.|++.+. +..+|+. ...|.+.+++|++|+.++||+|.++|+|+.+|++++.|.-... .+-
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 99999999999999977654 4567876 4578889999999999999999999999999999987765444 478
Q ss_pred hHHHHHhccCCCCC--CcceEEEEechhhH
Q 007085 425 ETFVHRTGRTGRAG--KKGSAILIYTDQQA 452 (618)
Q Consensus 425 ~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~ 452 (618)
+.++|..||+||.- .+|.++.|..-...
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 88999999999953 45666665544333
No 91
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.3e-28 Score=255.46 Aligned_cols=314 Identities=20% Similarity=0.251 Sum_probs=231.8
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
-.++|-++|++||-++..+.+++|.|+|.+|||++|-.++.-.-.. ..++++..|.++|.+|-++.|+..|
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---------ccceEecchhhhhccchHHHHHHhc
Confidence 4467999999999999999999999999999999988776544322 5689999999999999999999988
Q ss_pred CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
.+.. +++|+.. +...+.+||.|.+.|.+++-+..-.++++..||+||+|.+.+...+..|++++-.+|...
T Consensus 365 ~Dvg--LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 365 GDVG--LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred cccc--eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 6655 6777765 455678999999999999988887899999999999999999989999999999999999
Q ss_pred cEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCccc-----------------------ccC-------Ce--EEEEEe-
Q 007085 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK-----------------------LAD-------GI--SLYSIA- 324 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~-----------------------~~~-------~~--~~~~~~- 324 (618)
++|++|||.|+..+-.-.--..+...+.++...... +.. .. +-....
T Consensus 436 ~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 436 NFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred eEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 999999999985442211100011111000000000 000 00 000000
Q ss_pred ----------------------------ccCCcch--HHHHHHHHHhhc--CCcEEEEecchhHHHHHHHHHHh------
Q 007085 325 ----------------------------TSMYEKP--SIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAK------ 366 (618)
Q Consensus 325 ----------------------------~~~~~~~--~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~------ 366 (618)
....++. ..+.+++....+ --+++|||.+++.|++.++.|..
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0000011 234445444322 34899999999999999988743
Q ss_pred ----------------------------------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 367 ----------------------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 367 ----------------------------------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
.-.++++|+++-+--++-++..|..|-++||+||.++++|||.|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 0135678999999999999999999999999999999999999866
Q ss_pred cEEEEcCCC---------CChhHHHHHhccCCCCC--CcceEEEEechh
Q 007085 413 DLIIHYELP---------NTSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 413 ~~VI~~~~p---------~~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
.+|+. ... -.+-+|.|+.|||||.| .+|++++++...
T Consensus 676 tvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 55553 221 26789999999999976 678888877544
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=3.1e-26 Score=260.61 Aligned_cols=318 Identities=17% Similarity=0.289 Sum_probs=201.2
Q ss_pred CCChHHHHHHHHHHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~-----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
..+++||.+||..+.. .+++||+++||||||.+++.. +..+.+. ....++|||+|+++|+.|+.+.+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~l-i~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIAL-MYRLLKA------KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHH-HHHHHhc------CccCeEEEEecHHHHHHHHHHHHH
Confidence 4589999999987752 357999999999999986443 3444331 124589999999999999999998
Q ss_pred HhCCCCc--eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-----cCCCCCCcceEEEccchhccCC-------
Q 007085 195 ESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-----NALNLSEVQFVVLDEADQMLSV------- 260 (618)
Q Consensus 195 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-----~~~~~~~~~~vViDEaH~~~~~------- 260 (618)
.+..... ...+++..... .........|+|+|++.|...+.. ....+.++++|||||||+-...
T Consensus 485 ~~~~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 485 DTKIEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred hcccccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 8642111 11111111001 111233479999999999765432 1245678999999999985310
Q ss_pred --------CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHH--------------hcCC---CcEEEec-cC-----
Q 007085 261 --------GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK--------------YLKN---PLTVDLV-GD----- 309 (618)
Q Consensus 261 --------~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~--------------~l~~---~~~i~~~-~~----- 309 (618)
.+...+..++..+ +...|+|||||...+..++.. ++.+ |..+... ..
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 1245677777765 457899999997543322211 1110 1111110 00
Q ss_pred -Ccc--c-cc---CCeEEEEEeccC------Ccc--------hHHHHHHHHHhh--cCCcEEEEecchhHHHHHHHHHHh
Q 007085 310 -SDQ--K-LA---DGISLYSIATSM------YEK--------PSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK 366 (618)
Q Consensus 310 -~~~--~-~~---~~~~~~~~~~~~------~~~--------~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~ 366 (618)
... . .. ..+......... .++ ..++..+++... ...++||||.++++|+.+++.|.+
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 000 0 00 000000000000 000 001112222211 246999999999999999988754
Q ss_pred cC----------CeeeecCcCCHHHHHHHHHHHhcCCc-cEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCC
Q 007085 367 SY----------NCEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTG 435 (618)
Q Consensus 367 ~~----------~~~~lhg~~~~~~r~~i~~~f~~g~~-~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~g 435 (618)
.+ .+..+|++++ +++++++.|+++.. .|+|+++++.+|+|+|.+++||++.++.|...|+|++||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 21 3556888875 56789999999886 68999999999999999999999999999999999999999
Q ss_pred CCCC---cceEEEEechh
Q 007085 436 RAGK---KGSAILIYTDQ 450 (618)
Q Consensus 436 R~g~---~g~~~~~~~~~ 450 (618)
|.-. +..++++..-.
T Consensus 799 R~~~~~~K~~f~I~D~vg 816 (1123)
T PRK11448 799 RLCPEIGKTHFRIFDAVD 816 (1123)
T ss_pred cCCccCCCceEEEEehHH
Confidence 9643 44555555433
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=249.37 Aligned_cols=343 Identities=20% Similarity=0.300 Sum_probs=231.5
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC--CCCCeEEEEcCc
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR--GRNPLCLVLAPT 182 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~--~~~~~~lil~Pt 182 (618)
+|..-..++. +...+.++|..+.+.++.. .++++|||||+|||.++++.|++.+..+...... -...++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444443 3445899999999998876 6799999999999999999999998764431110 124589999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEE--EEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC--CCCCCcceEEEccchhcc
Q 007085 183 RELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQML 258 (618)
Q Consensus 183 ~~La~q~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDEaH~~~ 258 (618)
++|++.|...+.+.+..+++.+ .++......+. -....|+||||+...-.-++.. ...+-++++||||+|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 9999999999998887665544 45554422211 1336899999999854333311 123457899999999764
Q ss_pred CCCcHHHHHHHHHHC-------CCCCcEEEEEeeCchHHHHHHHHhcC-CCcEEEeccCCcccccCCeEEEEEeccCCcc
Q 007085 259 SVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 259 ~~~~~~~~~~il~~l-------~~~~~~l~lSAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (618)
+. .++.++.+..+. ...++++.+|||+|+... ...|+. ++..+-.............+.+-+......+
T Consensus 451 Dd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 451 DD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh--hHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 44 677776666554 247899999999998432 222222 2211111111111111122222222222112
Q ss_pred h------HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh--------------------------------------
Q 007085 331 P------SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-------------------------------------- 366 (618)
Q Consensus 331 ~------~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-------------------------------------- 366 (618)
. .....+++.. ...++|||+.++++.-+.++.+++
T Consensus 528 ~~qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 1 2233344443 448999999999988777766642
Q ss_pred cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEE----EcCCC------CChhHHHHHhccCCC
Q 007085 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----HYELP------NTSETFVHRTGRTGR 436 (618)
Q Consensus 367 ~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI----~~~~p------~~~~~~~Qr~GR~gR 436 (618)
.+..+++|++|+..+|..+++.|.+|.++|+|+|..+++|+|+|.-+++| .||+. .++.+.+||.||+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 13466789999999999999999999999999999999999998776666 35543 388899999999999
Q ss_pred CC--CcceEEEEechhhHHHHHH
Q 007085 437 AG--KKGSAILIYTDQQARQVKS 457 (618)
Q Consensus 437 ~g--~~g~~~~~~~~~~~~~~~~ 457 (618)
.. +.+..+++....+..+...
T Consensus 687 p~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred CccCcCCceeeccCchHhhhhHH
Confidence 64 5667777766666554443
No 94
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=237.65 Aligned_cols=314 Identities=21% Similarity=0.258 Sum_probs=230.0
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
++.|-|+|..+|..+-++.++||.|.|.+|||.++-.+|...+.+ +-++++..|-++|.+|-++++..-|.
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhc
Confidence 467999999999999999999999999999999999998888765 56899999999999999999988775
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCc
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
++ .+.+|+.+ ++..+..||.|.+.|..++-+..-.++.+..||+||+|.|-+...+..|++-+-.+|.+.+
T Consensus 198 DV--GLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 198 DV--GLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred cc--ceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 43 44455554 4556789999999999998887767889999999999999998888888988889999999
Q ss_pred EEEEEeeCchHHHHH--HHHhcCCCcEEEeccCCcccccCC-eE----EEEEeccCCc----------------------
Q 007085 279 SMMFSATMPPWIRSL--TNKYLKNPLTVDLVGDSDQKLADG-IS----LYSIATSMYE---------------------- 329 (618)
Q Consensus 279 ~l~lSAT~~~~~~~~--~~~~l~~~~~i~~~~~~~~~~~~~-~~----~~~~~~~~~~---------------------- 329 (618)
.+++|||+|+..+-. +...-..|..+.........+..- +. -.++..+...
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 999999999864322 222222333332111111000000 00 0000000000
Q ss_pred ------c------------hHHHHHHHHHh--hcCCcEEEEecchhHHHHHHHHHHhc----------------------
Q 007085 330 ------K------------PSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKS---------------------- 367 (618)
Q Consensus 330 ------~------------~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~---------------------- 367 (618)
+ ..-+..+++.. .+-.++|||+.++++|+.++-.+.+.
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 0 00112222222 13468999999999999988766430
Q ss_pred ------------------CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----cCC---CC
Q 007085 368 ------------------YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YEL---PN 422 (618)
Q Consensus 368 ------------------~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~~~---p~ 422 (618)
-.+.++|+++-+--++-|.-.|.+|-+++|+||.+++.|+|.|.-++|+. ||- -|
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 12556799999999999999999999999999999999999987666663 221 12
Q ss_pred -ChhHHHHHhccCCCCC--CcceEEEEechh
Q 007085 423 -TSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 423 -~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
+.-+|+|+.|||||.| ..|.|+++++..
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCc
Confidence 6678999999999976 467788777654
No 95
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=1.1e-25 Score=232.08 Aligned_cols=318 Identities=21% Similarity=0.272 Sum_probs=225.8
Q ss_pred CChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|++||.+.++|+.+ +-++|+..+||.|||+.. ++++.++.... +.....||+||...| .+|.++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-----~~~GPfLVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-----GIPGPFLVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-----CCCCCeEEEeeHhhH-HHHHHHHHHh
Confidence 589999999998764 567999999999999866 55555554321 223458999997554 6699999999
Q ss_pred CCCCceEEEEcCCchHHHH--HHh-hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC
Q 007085 197 APSLDTICVYGGTPISHQM--RAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
+|.+.+++++|........ ..+ ....+|+|||+++.+.. ...+.--+|+++||||||++.+. ...+.++++.+
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 9999999999876533321 112 23689999999999764 22334557999999999999885 45566777777
Q ss_pred CCCCcEEEEEeeCc-hHHHHHHHHh-----------------c-----------------------------------CC
Q 007085 274 PQNRQSMMFSATMP-PWIRSLTNKY-----------------L-----------------------------------KN 300 (618)
Q Consensus 274 ~~~~~~l~lSAT~~-~~~~~~~~~~-----------------l-----------------------------------~~ 300 (618)
.... .|++|.||- +.+.+++... + ..
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 6444 467788863 2222222110 0 00
Q ss_pred CcEEEe-ccCC--------------------cc-----c----------------------ccCCeEEEEEeccCCcchH
Q 007085 301 PLTVDL-VGDS--------------------DQ-----K----------------------LADGISLYSIATSMYEKPS 332 (618)
Q Consensus 301 ~~~i~~-~~~~--------------------~~-----~----------------------~~~~~~~~~~~~~~~~~~~ 332 (618)
...+.+ +.-. .. . ...........+....|..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~ 474 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKML 474 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCccee
Confidence 000000 0000 00 0 0000111111223334667
Q ss_pred HHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcCCHHHHHHHHHHHhcCC---ccEEEEcCccccCC
Q 007085 333 IIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR---FNILIATDVAARGL 407 (618)
Q Consensus 333 ~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~---~~vLVaT~~~~~Gl 407 (618)
+|..++..+ ..+++||||.+.....+.|.++.. +.+....+.|.++-++|...++.|.... .-.|++|.+.+.||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 777777765 358899999999999999999884 5689999999999999999999998644 55689999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 408 Di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|+..+++||.||..|||..-.|..-||+|.|++..+.+|-.-.
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 9999999999999999999999999999999887766665433
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.8e-25 Score=242.01 Aligned_cols=316 Identities=21% Similarity=0.255 Sum_probs=213.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|. +-.+.-.+.-|..++||+|||++|.+|++..++. +..++||+||++||.|.++++..++. +
T Consensus 83 ~ydvQl--iGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 83 HFDVQL--IGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred cchHHH--hhhhhhccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 455554 4333334457899999999999999999977654 45699999999999999999998876 4
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc-CCCC-----CCcceEEEccchhccCC------------
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQMLSV------------ 260 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~-~~~~-----~~~~~vViDEaH~~~~~------------ 260 (618)
+.+.+++++.+...+.... .++|+|+||..| ++++... .+.+ ..+.++||||||.++-.
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 6677888887766654443 589999999999 8888765 2333 58999999999987421
Q ss_pred ----CcHHHHHHHHHHCCCC--------------CcEEEEEeeCchHHHHHH------------------------H---
Q 007085 261 ----GFAEDVEVILERLPQN--------------RQSMMFSATMPPWIRSLT------------------------N--- 295 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~~--------------~~~l~lSAT~~~~~~~~~------------------------~--- 295 (618)
.....+..++..+... .+.+.+|-.-...++.++ .
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 1223333344443221 222333332111111110 0
Q ss_pred --H-hcC-CC------cEEEeccCCccc----------------------------c-----------------------
Q 007085 296 --K-YLK-NP------LTVDLVGDSDQK----------------------------L----------------------- 314 (618)
Q Consensus 296 --~-~l~-~~------~~i~~~~~~~~~----------------------------~----------------------- 314 (618)
. ++. +. -.+.++.....+ +
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 0 011 00 001111100000 0
Q ss_pred ---------cCCeEEE---------------EEeccCCcchH-HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cC
Q 007085 315 ---------ADGISLY---------------SIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SY 368 (618)
Q Consensus 315 ---------~~~~~~~---------------~~~~~~~~~~~-~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~ 368 (618)
...+... .+..+...|.. ++..+.+.+..+.++||||++++.++.+.+.|.+ .+
T Consensus 390 ~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi 469 (896)
T PRK13104 390 DTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENI 469 (896)
T ss_pred hhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 0000000 01111222333 3344445567799999999999999999999976 49
Q ss_pred CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc------------------------------------
Q 007085 369 NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------------------ 412 (618)
Q Consensus 369 ~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~------------------------------------ 412 (618)
++.++|+.+.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 470 ~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 470 KHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred CeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHc
Confidence 9999999999999999999999995 99999999999998521
Q ss_pred --cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 413 --DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 --~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
-+||--..+.|..--.|..||+||.|.+|.+-.|++-.|.
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1677777788888889999999999999999888876654
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.4e-25 Score=245.42 Aligned_cols=313 Identities=19% Similarity=0.268 Sum_probs=226.0
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
-.+.|-++|++++..+..+.+++|++|||+|||+++-.++...+.. +.+++++.|.++|.+|.++++...+
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHHHh
Confidence 3455999999999999999999999999999999998888777655 5679999999999999999999877
Q ss_pred CCC--ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCC
Q 007085 198 PSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 198 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
.+. -+-+++|+.. ++.++.++|.|.+.|.+++.+....+.++..||+||+|.|.+...+..|++++-.+|.
T Consensus 187 gdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 187 GDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 533 2244555554 4567899999999999999888788999999999999999999999999999999999
Q ss_pred CCcEEEEEeeCchHHHHH--HHHhcCCCcEEEeccCCccccc----CCeEEEEEeccC----------------------
Q 007085 276 NRQSMMFSATMPPWIRSL--TNKYLKNPLTVDLVGDSDQKLA----DGISLYSIATSM---------------------- 327 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~--~~~~l~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~---------------------- 327 (618)
..++|+||||+++..+-- +...-..+..+.........+. .....+.+....
T Consensus 260 ~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 260 HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 999999999998753321 1111111211111100000000 000000000000
Q ss_pred ------------------------Ccc-hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh----------------
Q 007085 328 ------------------------YEK-PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---------------- 366 (618)
Q Consensus 328 ------------------------~~~-~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------------- 366 (618)
..+ ..++..+.. ...-++++|+.+++.|+..+..+..
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 000 111222211 1245899999999999877765531
Q ss_pred -------------cCC-------------eeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE---
Q 007085 367 -------------SYN-------------CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH--- 417 (618)
Q Consensus 367 -------------~~~-------------~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~--- 417 (618)
.++ +.++|++|-+..|..+...|..|-++|++||.+++.|+|+|.-++|+-
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 111 335689999999999999999999999999999999999987665552
Q ss_pred -cC----CCCChhHHHHHhccCCCCCC--cceEEEEec
Q 007085 418 -YE----LPNTSETFVHRTGRTGRAGK--KGSAILIYT 448 (618)
Q Consensus 418 -~~----~p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~ 448 (618)
+| .+-++.+|+|+.|||||.|- .|.++++..
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 22 12388899999999999764 566666643
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.2e-25 Score=238.31 Aligned_cols=313 Identities=20% Similarity=0.200 Sum_probs=217.6
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-- 198 (618)
.|++.|.-..-.+.. ..|..+.||+|||+++.+|++...+. +..+-|++||..||.|.++++..++.
T Consensus 81 ~~~dvQlig~l~L~~--G~Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 81 RHFDVQLIGGMVLHE--GKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCccHHHhhHHhcC--CchhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 377777666655544 45999999999999999999644433 45688999999999999999999886
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhccCC-----------
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV----------- 260 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~~~----------- 260 (618)
++.+.++.++.+...+.... .++|+++||..| +++++... .....+.++||||||.++=.
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 46677788887777666554 489999999999 88886653 23677999999999987411
Q ss_pred -----CcHHHHHHHHHHCCCC--------CcEEEEEee------------------------------------------
Q 007085 261 -----GFAEDVEVILERLPQN--------RQSMMFSAT------------------------------------------ 285 (618)
Q Consensus 261 -----~~~~~~~~il~~l~~~--------~~~l~lSAT------------------------------------------ 285 (618)
.....+..+...+... .+.+.+|..
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 1233444445544321 122222221
Q ss_pred -------------------------------------------------------------------CchHHHHHHHHhc
Q 007085 286 -------------------------------------------------------------------MPPWIRSLTNKYL 298 (618)
Q Consensus 286 -------------------------------------------------------------------~~~~~~~~~~~~l 298 (618)
......++...|-
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 387 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN 387 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC
Confidence 1111111110000
Q ss_pred CCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCc
Q 007085 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGD 376 (618)
Q Consensus 299 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~ 376 (618)
...+. ++...+...... ...+..+...|...+...+.+ +..+.++||||++++.++.+.+.|.+. +++..+|+.
T Consensus 388 --l~vv~-IPtnkp~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 388 --LDVVV-IPTNRPMIRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred --CCEEE-cCCCCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 00000 000000000000 011222334456666655544 456789999999999999999999764 999999996
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc--------------------------------------cEEEEc
Q 007085 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--------------------------------------DLIIHY 418 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~--------------------------------------~~VI~~ 418 (618)
+.+|+..+..|..+...|+|||++++||+||+-- -|||.-
T Consensus 464 --q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigT 541 (830)
T PRK12904 464 --NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGT 541 (830)
T ss_pred --hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEec
Confidence 7899999999999999999999999999999653 268888
Q ss_pred CCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 419 ~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
..|.|..--.|..||+||.|.+|.+-.|++-.|.
T Consensus 542 erhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 542 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred ccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 8888888889999999999999999988876654
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=4.1e-25 Score=240.57 Aligned_cols=306 Identities=22% Similarity=0.318 Sum_probs=224.8
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CC
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SL 200 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~ 200 (618)
.+....+.+..+.+++.++|.++||||||+..-..+++... ....++.++-|.+.-|..+++.+.+.+. .+
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 45667788888888899999999999999865444444421 3356899999999888888888876543 22
Q ss_pred ----ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch-hccCCCcHH-HHHHHHHHCC
Q 007085 201 ----DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAE-DVEVILERLP 274 (618)
Q Consensus 201 ----~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH-~~~~~~~~~-~~~~il~~l~ 274 (618)
...+-+.+. ......|-+.|.+.|++.+..+.+ +..+++|||||+| +-++.++.- .+..++...+
T Consensus 123 G~~VGY~iRfe~~--------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr 193 (845)
T COG1643 123 GETVGYSIRFESK--------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR 193 (845)
T ss_pred CceeeEEEEeecc--------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC
Confidence 222222111 234468999999999999987765 8999999999999 444433333 3344466667
Q ss_pred CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEe-ccCCc-chHHHHHHHHHhh--cCCcEEEE
Q 007085 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYE-KPSIIGQLITEHA--KGGKCIVF 350 (618)
Q Consensus 275 ~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~l~~~~--~~~~~lVf 350 (618)
++.++|+||||+.. +.+..++.+...+.+.... ..++.++.. ...+. ....+...+..+. ..+.+|||
T Consensus 194 ~DLKiIimSATld~---~rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 194 DDLKLIIMSATLDA---ERFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred CCceEEEEecccCH---HHHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEE
Confidence 78999999999987 5566677766666553222 223333322 22222 3344444444432 36799999
Q ss_pred ecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCC-----
Q 007085 351 TQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL----- 420 (618)
Q Consensus 351 ~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~----- 420 (618)
.+...+++.+++.|.+ .+.+.++|+.++.+++.++++.-..++.+|++||+++|.+|.|+.+.+||+-..
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9999999999999976 356889999999999999999888888889999999999999999999996332
Q ss_pred -------------CCChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 421 -------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 421 -------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
|.+-++..||.||+||. .+|.|+-+|+..+..
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 34667789999999999 589999999986553
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3e-25 Score=239.15 Aligned_cols=314 Identities=20% Similarity=0.241 Sum_probs=213.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|++.|.-..-.+..+ .|....||+|||+++.+|++...+. +..+.|++||..||.|.++++..++..
T Consensus 79 ~~~~dvQlig~l~l~~G--~iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEG--NIAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred CCCchhHHHHHHHHhcC--CcccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 34778887666555554 4999999999999999998888766 788999999999999999999988764
Q ss_pred --CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhccCC----------
Q 007085 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV---------- 260 (618)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~~~---------- 260 (618)
+.+.++.+..+...+... ..++|+++|...| +++|+... .....+.++||||+|.++=.
T Consensus 148 LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 566667666665554443 3579999999888 44444321 12456889999999977311
Q ss_pred ------CcHHHHHHHHHHCCCC-------------------C--------------------------------------
Q 007085 261 ------GFAEDVEVILERLPQN-------------------R-------------------------------------- 277 (618)
Q Consensus 261 ------~~~~~~~~il~~l~~~-------------------~-------------------------------------- 277 (618)
.....+..++..+... .
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 0111122222211110 0
Q ss_pred -----------------------------------------------------------------------cEEEEEeeC
Q 007085 278 -----------------------------------------------------------------------QSMMFSATM 286 (618)
Q Consensus 278 -----------------------------------------------------------------------~~l~lSAT~ 286 (618)
++.+||.|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 111222222
Q ss_pred chHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHH-HHhhcCCcEEEEecchhHHHHHHHHHH
Q 007085 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHAMA 365 (618)
Q Consensus 287 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~lVf~~~~~~~~~l~~~L~ 365 (618)
.....++...| +...+. ++...+........ .+..+...|...+...+ ..+..+.++||||+++..++.+++.|.
T Consensus 386 ~~e~~Ef~~iY--~l~vv~-IPtnkp~~r~d~~d-~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 386 KTEEEEFREIY--NMEVIT-IPTNRPVIRKDSPD-LLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred HHHHHHHHHHh--CCCEEE-cCCCCCeeeeeCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 22111111111 111111 11111111111111 11222334555555444 345678999999999999999999997
Q ss_pred hc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC---Ccc-----EEEEcCCCCChhHHHHHhccCCC
Q 007085 366 KS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LIIHYELPNTSETFVHRTGRTGR 436 (618)
Q Consensus 366 ~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~---~~~-----~VI~~~~p~~~~~~~Qr~GR~gR 436 (618)
+. +++..+|+++.+.++..+..+++.|. |+|||++++||+||+ ++. +||+++.|.+...|.|++||+||
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhcc
Confidence 64 99999999999888888888777776 999999999999994 788 99999999999999999999999
Q ss_pred CCCcceEEEEechhhH
Q 007085 437 AGKKGSAILIYTDQQA 452 (618)
Q Consensus 437 ~g~~g~~~~~~~~~~~ 452 (618)
.|.+|.+.++++..|.
T Consensus 540 qG~~G~s~~~~sleD~ 555 (796)
T PRK12906 540 QGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCcceEEEEeccch
Confidence 9999999999987754
No 101
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=222.15 Aligned_cols=304 Identities=17% Similarity=0.296 Sum_probs=216.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC---
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--- 198 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--- 198 (618)
...+-.+.+..+.+++-+||.++||||||...-..+++. +.....++.+..|+|.-|..+++++..-..
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~ea--------G~~~~g~I~~TQPRRVAavslA~RVAeE~~~~l 123 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEA--------GFASSGKIACTQPRRVAAVSLAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhc--------ccccCCcEEeecCchHHHHHHHHHHHHHhCCCc
Confidence 456667888889999999999999999998543333322 222244599999999888888877755321
Q ss_pred --CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh-ccCCCcHHHHHHHHHH---
Q 007085 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILER--- 272 (618)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~-~~~~~~~~~~~~il~~--- 272 (618)
.+...+-+.+.. .....|.+.|.++|++.+..+.+ +..+++|||||||. -+. -+.+.-+++.
T Consensus 124 G~~VGY~IRFed~t--------s~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~---TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 124 GEEVGYTIRFEDST--------SKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLH---TDILLGLLKKILK 191 (674)
T ss_pred CceeeeEEEecccC--------CCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhH---HHHHHHHHHHHHh
Confidence 223333333332 23468999999999998877665 88999999999994 222 1222223332
Q ss_pred CCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEe-ccCCcchHHHHHHHHHh--hcCCcEEE
Q 007085 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSIIGQLITEH--AKGGKCIV 349 (618)
Q Consensus 273 l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~--~~~~~~lV 349 (618)
-+++.++|+||||+.. +.+..|+.....+.+.+.. ..++..+.. ...+...+.+..+++-+ .+.+.+||
T Consensus 192 ~R~~LklIimSATlda---~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILv 263 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDA---EKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILV 263 (674)
T ss_pred cCCCceEEEEeeeecH---HHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEE
Confidence 2457899999999985 5566777775555543322 123333332 22222333333333333 45679999
Q ss_pred EecchhHHHHHHHHHHhc---C------CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcC-
Q 007085 350 FTQTKRDADRLAHAMAKS---Y------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE- 419 (618)
Q Consensus 350 f~~~~~~~~~l~~~L~~~---~------~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~- 419 (618)
|....++++.+++.|.+. . .+.++|+.++.+++.++++.-..|..+|+++|++++..|.|+.+.+||+-.
T Consensus 264 FLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~ 343 (674)
T KOG0922|consen 264 FLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGF 343 (674)
T ss_pred EeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCc
Confidence 999999999999998653 1 245789999999999999999999999999999999999999999999633
Q ss_pred -------C----------CCChhHHHHHhccCCCCCCcceEEEEechhhHHH
Q 007085 420 -------L----------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 420 -------~----------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
+ |-|-++..||.|||||.+ +|+|+-+|+.++...
T Consensus 344 vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 344 VKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred eEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 2 447788899999999994 899999999887643
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=6e-25 Score=244.09 Aligned_cols=321 Identities=20% Similarity=0.232 Sum_probs=217.5
Q ss_pred CChHHHHHHHHHHhCC---C-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAMQG---R-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~---~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..++.|..++..++.. . .+++.+|||+|||++.+.+++..+... .....+++++.|++.++++.++.+++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 3489999999988764 4 688999999999999988888776542 123678999999999999999999987
Q ss_pred CCCCceEEE--EcCCchHHHHHH-----hh---------cCCCEEEEChHHHHHHHHh-cCCC---CCCcceEEEccchh
Q 007085 197 APSLDTICV--YGGTPISHQMRA-----LD---------YGVDAVVGTPGRVIDLIKR-NALN---LSEVQFVVLDEADQ 256 (618)
Q Consensus 197 ~~~~~~~~~--~~~~~~~~~~~~-----~~---------~~~~Ilv~T~~~l~~~l~~-~~~~---~~~~~~vViDEaH~ 256 (618)
+....+... ++.......... .. .-..++++|+..+...... .... .--.+++|+||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 654443333 332221111111 00 1144555555555442111 1111 11246899999999
Q ss_pred ccCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEE-eccCCcc--hH
Q 007085 257 MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSMYEK--PS 332 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~ 332 (618)
+.+......+..++..+ .....+|+||||+|+..++.+...+.+...+.......... ........ ....... ..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~ 428 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKE-DEPGLKRKERVDVEDGPQEE 428 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccc-cccccccccchhhhhhhhHh
Confidence 87663334444444443 35789999999999999999888876665554321100000 00000000 0011111 12
Q ss_pred HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCC-eeeecCcCCHHHHHHHHHHHh----cCCccEEEEcCccccCC
Q 007085 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFR----DGRFNILIATDVAARGL 407 (618)
Q Consensus 333 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~lhg~~~~~~r~~i~~~f~----~g~~~vLVaT~~~~~Gl 407 (618)
..........++.+++|+|||++.|.++++.|+.... +..+|+++...+|.+.++.++ .....|+|||+++|.||
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 3444455556788999999999999999999988766 999999999999998888654 46789999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHhccCCCCC--CcceEEEEechh
Q 007085 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 408 Di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
|+ +.+++|- -+..+..++||+||++|.| ..+..+++....
T Consensus 509 Di-dfd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 509 DI-DFDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cc-ccCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 99 6888876 4445667899999999998 567777776544
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5.2e-24 Score=230.07 Aligned_cols=145 Identities=21% Similarity=0.333 Sum_probs=122.2
Q ss_pred CCCCCHHHHHHHH-----HcCCCCC---hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 103 KLDISQDIVAALA-----RRGISKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 103 ~~~l~~~l~~~l~-----~~~~~~l---~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
.+.+..++.+.+. ..++..| +|+|.++++.+..++++|++++||+|||++|++|++..++. +.
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~ 136 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GK 136 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cC
Confidence 5667777777776 4677777 99999999999999999999999999999999999987754 23
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcCCCCC-------
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNALNLS------- 244 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~~~~~------- 244 (618)
.++||+||++||.|.++++..++. ++.+.+++++.+...+...+ .++|+|+||.+| +++++...+.+.
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 489999999999999999988764 46778888998888776554 589999999999 999987755554
Q ss_pred CcceEEEccchhcc
Q 007085 245 EVQFVVLDEADQML 258 (618)
Q Consensus 245 ~~~~vViDEaH~~~ 258 (618)
.+.++||||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 46899999999885
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=7.9e-25 Score=201.63 Aligned_cols=163 Identities=31% Similarity=0.539 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--C
Q 007085 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--L 200 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~--~ 200 (618)
||+|.++++.+.+++++++.+|||+|||++++++++..+.+. ...++++++|+++|++|+++++.+++.. +
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeeccccccccccccccccccccc
Confidence 799999999999999999999999999999999999888652 2348999999999999999999998864 5
Q ss_pred ceEEEEcCCchH-HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC--CCC
Q 007085 201 DTICVYGGTPIS-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNR 277 (618)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~--~~~ 277 (618)
.+..++++.... .....+...++|+|+||++|.+.+......+.++++||+||+|.+..+.+...+..++..+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 677777777655 44445556799999999999999988666777899999999999988778888888888874 368
Q ss_pred cEEEEEeeCchHHHH
Q 007085 278 QSMMFSATMPPWIRS 292 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~ 292 (618)
++++||||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999976654
No 105
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=2.5e-24 Score=233.16 Aligned_cols=330 Identities=19% Similarity=0.239 Sum_probs=235.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
+...+.+....-...+.++++.++.+.+++.++|.++||||||+....-+++...... ..+.+++..|++.-|.
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAI 233 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHH
Confidence 3333444333334467889999999999999999999999999988888888765522 4677999999999999
Q ss_pred HHHHHHHH-hCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch-hccCCCcHHH
Q 007085 188 QVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED 265 (618)
Q Consensus 188 q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH-~~~~~~~~~~ 265 (618)
.+++++.+ .++.....+-+ ...-.. .......+++||.+.|++.+... -.+..+.+||+||+| +-.+.+|...
T Consensus 234 svAeRVa~ER~~~~g~~VGY---qvrl~~-~~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi 308 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGY---QVRLES-KRSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLI 308 (924)
T ss_pred HHHHHHHHHhccccCCeeeE---EEeeec-ccCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHH
Confidence 99888765 32222211111 000000 11223689999999999998774 348899999999999 4455667777
Q ss_pred HHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccc-----------c---CCeEEE----------
Q 007085 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-----------A---DGISLY---------- 321 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~-----------~---~~~~~~---------- 321 (618)
+.+.+-..+++.++|+||||+.. +....|+.....+.+.....+.. . .....+
T Consensus 309 ~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~ 385 (924)
T KOG0920|consen 309 LLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRL 385 (924)
T ss_pred HHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccc
Confidence 77777777789999999999984 55666666665554432210000 0 000000
Q ss_pred --EEeccCCcchHHHHHHHHHh---hcCCcEEEEecchhHHHHHHHHHHh--------cCCeeeecCcCCHHHHHHHHHH
Q 007085 322 --SIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDISQSQRERTLSA 388 (618)
Q Consensus 322 --~~~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~r~~i~~~ 388 (618)
......+...+++..+++.. ...+.+|||.+...++..+++.|.. ++-+.++|+.|+..+++.++..
T Consensus 386 ~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~ 465 (924)
T KOG0920|consen 386 ARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKR 465 (924)
T ss_pred ccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCC
Confidence 00011123445555555543 2367899999999999999999853 2456788999999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCccEEEE--------cCCCC----------ChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 389 FRDGRFNILIATDVAARGLDVPNVDLIIH--------YELPN----------TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 389 f~~g~~~vLVaT~~~~~GlDi~~~~~VI~--------~~~p~----------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
-..|..+||++|++++..|.|+++.+||+ ||+-. +-..-.||+|||||. ++|.||.+++..
T Consensus 466 pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 466 PPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred CCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999999999999999999999996 44433 444557999999998 789999999876
Q ss_pred hH
Q 007085 451 QA 452 (618)
Q Consensus 451 ~~ 452 (618)
.+
T Consensus 545 ~~ 546 (924)
T KOG0920|consen 545 RY 546 (924)
T ss_pred hh
Confidence 44
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=227.03 Aligned_cols=351 Identities=23% Similarity=0.312 Sum_probs=236.9
Q ss_pred CCHHHHH-HHHHcCCCCChHHHHHHH--HHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 106 ISQDIVA-ALARRGISKLFPIQKAVL--EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 106 l~~~l~~-~l~~~~~~~l~~~Q~~~i--~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
+++.+.+ ..+.+++..++.||.+++ +.++.++|+|...||+.|||+++-+.++..++.. ...++++.|.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecce
Confidence 3344444 345678999999999997 5788889999999999999999999888877652 3458999999
Q ss_pred HHHHHHHHHHHHHhCCCCc--eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh--cCCCCCCcceEEEccchhcc
Q 007085 183 RELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 183 ~~La~q~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--~~~~~~~~~~vViDEaH~~~ 258 (618)
.+.+......+..+..++. +...+|..+.... ....++.|||.++-..++.. ..-.+..+++|||||.|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 8888887777777664333 3333444333222 22358999999987655443 11236678999999999999
Q ss_pred CCCcHHHHHHHHHHC-----CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCC---cc-c------------ccCC
Q 007085 259 SVGFAEDVEVILERL-----PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS---DQ-K------------LADG 317 (618)
Q Consensus 259 ~~~~~~~~~~il~~l-----~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~---~~-~------------~~~~ 317 (618)
+.+....++.++.++ ....|+|.||||+++. .++..++......+..... +. . ....
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHH
Confidence 988888888877664 2346799999999873 4444444322222100000 00 0 0000
Q ss_pred eEEEEEeccCCcchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHh------------------------------
Q 007085 318 ISLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK------------------------------ 366 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~------------------------------ 366 (618)
+..........+..+.+..+..+. .++.++||||++++-|+.++..+.+
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 000000000001111222222222 3455699999999999888755432
Q ss_pred ---------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcC----CCCChhHHHHHhcc
Q 007085 367 ---------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE----LPNTSETFVHRTGR 433 (618)
Q Consensus 367 ---------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~----~p~~~~~~~Qr~GR 433 (618)
.+.++.+|.+++.++|+.+...|++|...|++||+.+..|+++|.-.++|-.- ...+..+|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 12466789999999999999999999999999999999999999888877532 12377899999999
Q ss_pred CCCCC--CcceEEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 434 TGRAG--KKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 434 ~gR~g--~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
|||+| ..|.+++++...+...+.. .+....+....-+
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~---lv~~~~~~~~S~l 631 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRE---LVNSPLKPLNSCL 631 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHH---HHhcccccccccc
Confidence 99985 6788999999988766653 3444444444333
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.5e-24 Score=218.58 Aligned_cols=310 Identities=16% Similarity=0.240 Sum_probs=220.4
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+.....+++-.+.+.++..++.+||.++||||||...-..+.+.=.. ..+.++-+..|.+.-|..++.++.+-
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-------KGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-------cCCceEeecCcchHHHHHHHHHHHHH
Confidence 34455788889999999999999999999999998533222222110 12445888999999999998887653
Q ss_pred -CCCC----ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch-hccCCCcHHHHHHHH
Q 007085 197 -APSL----DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAEDVEVIL 270 (618)
Q Consensus 197 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH-~~~~~~~~~~~~~il 270 (618)
...+ ...+-+-+. .....-|-+.|.++|++.+.... ++..+++||||||| +.+..+..--+-+.+
T Consensus 334 MgvkLG~eVGYsIRFEdc--------TSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDI 404 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRFEDC--------TSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDI 404 (902)
T ss_pred hCcccccccceEEEeccc--------cCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHH
Confidence 2222 222222111 12335678999999998776544 48899999999999 333333333444555
Q ss_pred HHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc-CCcchHHHHHHHHHh--hcCCcE
Q 007085 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-MYEKPSIIGQLITEH--AKGGKC 347 (618)
Q Consensus 271 ~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~--~~~~~~ 347 (618)
.+++++.++|++|||+.. +.+..|+.+.....+.+.. ..+..++...+ .+.....+..+++-+ .+.+.+
T Consensus 405 ar~RpdLKllIsSAT~DA---ekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMDA---EKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred HhhCCcceEEeeccccCH---HHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccE
Confidence 667889999999999986 4556677666666542221 12333333333 233334444444433 346789
Q ss_pred EEEecchhHHHHHHHHHHh----------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE
Q 007085 348 IVFTQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 348 lVf~~~~~~~~~l~~~L~~----------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~ 417 (618)
|||....++++.+.+.|.+ .+-+.+||+.++++.+.+|++.-..|..+|++||++++..|.|+++.+||+
T Consensus 477 LVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 477 LVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEec
Confidence 9999999999888887754 245778999999999999999999999999999999999999999999996
Q ss_pred cCC------------------CCChhHHHHHhccCCCCCCcceEEEEechhh
Q 007085 418 YEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 418 ~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
-.+ |.+-+...||.|||||.| +|+|+-+|+.-.
T Consensus 557 pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 557 PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 432 345667789999999996 899999998543
No 108
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.92 E-value=1.4e-24 Score=234.36 Aligned_cols=318 Identities=19% Similarity=0.266 Sum_probs=222.4
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+|+.||.+.+++++ .+.++|+..++|.|||+.- +..|..+...... ....|||+|. +-+..|.+++..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~-----~gpflvvvpl-st~~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQI-----HGPFLVVVPL-STITAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhc-----cCCeEEEeeh-hhhHHHHHHHHH
Confidence 579999999999876 4689999999999999754 4445555442222 3358999997 455669999999
Q ss_pred hCCCCceEEEEcCCchHHHHHHhh----c-----CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHH
Q 007085 196 SAPSLDTICVYGGTPISHQMRALD----Y-----GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
|. .+++++.+|.....+.++... . .+++|++|++.++..... +.--+|.+++|||||++.+. ...+
T Consensus 442 w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 442 WT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred Hh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHH
Confidence 98 899999998887766655443 1 489999999999864432 34457899999999999764 4555
Q ss_pred HHHHHHCCCCCcEEEEEeeC-chHHHHHHHHh--cC--------------------------------------------
Q 007085 267 EVILERLPQNRQSMMFSATM-PPWIRSLTNKY--LK-------------------------------------------- 299 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~-~~~~~~~~~~~--l~-------------------------------------------- 299 (618)
...+..+..+. .|++|.|| .+.+.+++... +.
T Consensus 517 ~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 55566665444 46667775 34444443221 10
Q ss_pred ---CCcEEEecc-------------------------------------------------CCcccccCCeEE------E
Q 007085 300 ---NPLTVDLVG-------------------------------------------------DSDQKLADGISL------Y 321 (618)
Q Consensus 300 ---~~~~i~~~~-------------------------------------------------~~~~~~~~~~~~------~ 321 (618)
....|-.+. ..+......+.. .
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 000000000 000000000000 0
Q ss_pred EEeccCCcchHHHHHHHHHhhc-CCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcCCHHHHHHHHHHHhc---CCccE
Q 007085 322 SIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD---GRFNI 396 (618)
Q Consensus 322 ~~~~~~~~~~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~---g~~~v 396 (618)
........|+-+|..+|..+.. +++||||.+.+...+.|+++|. +.++..-|.|.+..+.|+.+++.|.+ ....+
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 0000111233344455555543 6899999999999999999995 45999999999999999999999986 45778
Q ss_pred EEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEE--EEechh
Q 007085 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAI--LIYTDQ 450 (618)
Q Consensus 397 LVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~--~~~~~~ 450 (618)
|+||.+.+.|||+..+++||+||..|||..-+|..-||+|.|++..+- -|++..
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999876654 444443
No 109
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.92 E-value=7.4e-23 Score=213.78 Aligned_cols=314 Identities=17% Similarity=0.260 Sum_probs=196.8
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh-CCCC
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSL 200 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~-~~~~ 200 (618)
.-.+-.+++..+..+..++|.++||+|||..+..-+|+.++.. ..+...-+++.-|++..+..+++++..- ....
T Consensus 379 va~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~n----s~g~~~na~v~qprrisaisiaerva~er~e~~ 454 (1282)
T KOG0921|consen 379 VAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLEN----SNGASFNAVVSQPRRISAISLAERVANERGEEV 454 (1282)
T ss_pred HHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhc----cccccccceeccccccchHHHHHHHHHhhHHhh
Confidence 4445566777777888899999999999999988899888762 2233345778889998888888776532 1111
Q ss_pred ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc-CCCcHHHHHHHHHHCCCCCcE
Q 007085 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQS 279 (618)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~-~~~~~~~~~~il~~l~~~~~~ 279 (618)
.-.+.+ +.......-...-.|++||.+-+++.+.+. +..+.++|+||+|... +..|...+..-+.-..++.++
T Consensus 455 g~tvgy---~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 455 GETCGY---NVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred cccccc---cccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhh
Confidence 112211 111111111122468999999999988764 5578899999999642 223444444433344456777
Q ss_pred EEEEeeCchHHHHHHHHhcCCCcEEEec---------------------------------cCCcccccC-CeEEEEEec
Q 007085 280 MMFSATMPPWIRSLTNKYLKNPLTVDLV---------------------------------GDSDQKLAD-GISLYSIAT 325 (618)
Q Consensus 280 l~lSAT~~~~~~~~~~~~l~~~~~i~~~---------------------------------~~~~~~~~~-~~~~~~~~~ 325 (618)
++||||+..+.. ..++.+...+.+. .+......+ .-+.+...+
T Consensus 529 ~lmsatIdTd~f---~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~ 605 (1282)
T KOG0921|consen 529 VLMSATIDTDLF---TNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC 605 (1282)
T ss_pred hhhhcccchhhh---hhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccccc
Confidence 788888764321 1111111111000 000000000 000000111
Q ss_pred cC----------------CcchHHHHHHHHHh---hcCCcEEEEecchhHHHHHHHHHHh--------cCCeeeecCcCC
Q 007085 326 SM----------------YEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDIS 378 (618)
Q Consensus 326 ~~----------------~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~--------~~~~~~lhg~~~ 378 (618)
+. .....+++.++... .-.+.++||.+-...+..|...|.. .+++..+|+..+
T Consensus 606 dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 606 DPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred ChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 00 01112222232222 1246899999999999999887743 367888999999
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCC------------------CCChhHHHHHhccCCCCCCc
Q 007085 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKK 440 (618)
Q Consensus 379 ~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~------------------p~~~~~~~Qr~GR~gR~g~~ 440 (618)
..++.++.+....+..++|++|.+++..+.+.++..||+.+. ..+....+||.||++|. ++
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~ 764 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RP 764 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cc
Confidence 999999999999999999999999999999988888775432 12555678999999998 67
Q ss_pred ceEEEEech
Q 007085 441 GSAILIYTD 449 (618)
Q Consensus 441 g~~~~~~~~ 449 (618)
|.|+.++..
T Consensus 765 G~~f~lcs~ 773 (1282)
T KOG0921|consen 765 GFCFHLCSR 773 (1282)
T ss_pred cccccccHH
Confidence 888888753
No 110
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1e-22 Score=211.44 Aligned_cols=316 Identities=18% Similarity=0.268 Sum_probs=219.3
Q ss_pred CCChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|.+||++.+.++.. +...|+-.+||.|||+.. ++.|..+.... + -...+|||||. .+..||.+++..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~-k----~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSG-K----LTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcc-c----ccCceEEEccH-HHHHHHHHHHHH
Confidence 3478999999998764 456899999999999865 33344443211 1 12569999995 888999999999
Q ss_pred hCCCCceEEEEcCCch---------HHHHHHh----hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc
Q 007085 196 SAPSLDTICVYGGTPI---------SHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~---------~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~ 262 (618)
|+|.+++.++++.... ......+ .....|+|+|++.+.-. ...+.-..|+++|+||.|++-+..
T Consensus 277 w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 277 WWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred hCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc-
Confidence 9999999999877652 1111111 12467999999887532 223445679999999999998763
Q ss_pred HHHHHHHHHHCCCCCcEEEEEeeCc-hHHHHHHHHh-----------------cCCCcEE--------------------
Q 007085 263 AEDVEVILERLPQNRQSMMFSATMP-PWIRSLTNKY-----------------LKNPLTV-------------------- 304 (618)
Q Consensus 263 ~~~~~~il~~l~~~~~~l~lSAT~~-~~~~~~~~~~-----------------l~~~~~i-------------------- 304 (618)
.++...+..++ ..+.|+||.||. +.+.+++..| +..|+.+
T Consensus 354 -s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 45555556664 566677888873 2233322211 0000000
Q ss_pred -----------------------------Eecc-----------------------CC---------cccccCCeE----
Q 007085 305 -----------------------------DLVG-----------------------DS---------DQKLADGIS---- 319 (618)
Q Consensus 305 -----------------------------~~~~-----------------------~~---------~~~~~~~~~---- 319 (618)
-... .. ...+..+..
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 0000 00 000000000
Q ss_pred ---------EEEEeccCCcchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHh--cCCeeeecCcCCHHHHHHHHH
Q 007085 320 ---------LYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLS 387 (618)
Q Consensus 320 ---------~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~ 387 (618)
.+.-......|+..+..++..- ..+.++|+|..++...+.|..+|.. .+.+..+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0001112223566666666543 4578999999999999999999983 699999999999999999999
Q ss_pred HHhcCC-c-cEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 388 AFRDGR-F-NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 388 ~f~~g~-~-~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
.|+++. . -.|++|.+.+-|+|+..++-||+||+.|||..-.|..-|+.|.|++..+++|-
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYR 653 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYR 653 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEE
Confidence 999766 3 35788999999999999999999999999999999999999999887777664
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.8e-22 Score=216.52 Aligned_cols=316 Identities=21% Similarity=0.269 Sum_probs=208.2
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|. +-.+.-.+.-|.+++||.|||+++.+|++..++. +..|.||+|+..||.+.++++..++. +
T Consensus 83 ~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 83 HFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred cCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 555554 4333334567999999999999999999877654 55699999999999999999988765 4
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc-CCCC-----CCcceEEEccchhccCCC-----------
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQMLSVG----------- 261 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~-~~~~-----~~~~~vViDEaH~~~~~~----------- 261 (618)
+.+.++.++.+... +.....++|+++|+..| +++|... .+.. ..+.++||||+|.++-..
T Consensus 152 lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 66677777766533 22334689999999999 8877665 3333 678999999999875321
Q ss_pred -----cHHHHHHHHHHCCC-------------------CCcEEEEEeeCchHHHHHH-----------------------
Q 007085 262 -----FAEDVEVILERLPQ-------------------NRQSMMFSATMPPWIRSLT----------------------- 294 (618)
Q Consensus 262 -----~~~~~~~il~~l~~-------------------~~~~l~lSAT~~~~~~~~~----------------------- 294 (618)
....+..++..+.. ..+.+.+|-.=...++.++
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 12222222222211 1122222211000011100
Q ss_pred -----H-H-hcC-CC------cEEEeccCCcccc----------------------------------------------
Q 007085 295 -----N-K-YLK-NP------LTVDLVGDSDQKL---------------------------------------------- 314 (618)
Q Consensus 295 -----~-~-~l~-~~------~~i~~~~~~~~~~---------------------------------------------- 314 (618)
. . ++. +. -.+.++.....++
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 0 0 000 10 0011111000000
Q ss_pred --------------cCCeEEEE---------------EeccCCcchH-HHHHHHHHhhcCCcEEEEecchhHHHHHHHHH
Q 007085 315 --------------ADGISLYS---------------IATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (618)
Q Consensus 315 --------------~~~~~~~~---------------~~~~~~~~~~-~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 364 (618)
...+.... +.....+|.. ++..+.+.+..+.++||||.+++.++.+.+.|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L 469 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLM 469 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHH
Confidence 00000000 1111222333 33444455667999999999999999999999
Q ss_pred Hh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc-------------------------------
Q 007085 365 AK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------------- 412 (618)
Q Consensus 365 ~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~------------------------------- 412 (618)
.+ .+++.++|+.+.+.++..+.+.|+.|. |+|||++++||+||.--
T Consensus 470 ~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (908)
T PRK13107 470 VKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDE 547 (908)
T ss_pred HHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHH
Confidence 76 489999999999999999999999998 99999999999999621
Q ss_pred ------cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 413 ------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 ------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
-+||--..+.|..--.|..||+||.|.+|.+..|++-.|.
T Consensus 548 V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 548 VVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2688888888888889999999999999999988876654
No 112
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.4e-22 Score=204.58 Aligned_cols=304 Identities=17% Similarity=0.275 Sum_probs=209.5
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC-
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA- 197 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~- 197 (618)
+......+.+.+..|..++.++|.++||||||......+++. +-.....+-+..|.+..|..++.++..-.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed--------GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED--------GYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc--------ccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 344456677778888888899999999999998543333222 22335578888899999999998887633
Q ss_pred CCC----ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh-ccCCCcHHHHHHHHHH
Q 007085 198 PSL----DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILER 272 (618)
Q Consensus 198 ~~~----~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~-~~~~~~~~~~~~il~~ 272 (618)
..+ ...+-+.+.. .....|-+.|.+.|++...... .+..+++||+||||. -++.+..--+.+.+-.
T Consensus 426 ~~lG~~VGYsIRFEdvT--------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~la 496 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVT--------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLA 496 (1042)
T ss_pred CccccccceEEEeeecC--------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHH
Confidence 222 2222222222 2335788999999987665444 378899999999994 3443322223333333
Q ss_pred CCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHH----h--hcCCc
Q 007085 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE----H--AKGGK 346 (618)
Q Consensus 273 l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~--~~~~~ 346 (618)
-+.+.++|++|||+.. ..+..|+.+.....+.+... .++..+.... ..+.+...+++ + ...+.
T Consensus 497 rRrdlKliVtSATm~a---~kf~nfFgn~p~f~IpGRTy-----PV~~~~~k~p---~eDYVeaavkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 497 RRRDLKLIVTSATMDA---QKFSNFFGNCPQFTIPGRTY-----PVEIMYTKTP---VEDYVEAAVKQAVQIHLSGPPGD 565 (1042)
T ss_pred hhccceEEEeeccccH---HHHHHHhCCCceeeecCCcc-----ceEEEeccCc---hHHHHHHHHhhheEeeccCCCCC
Confidence 3458899999999986 44556676666665533221 1222222221 22333333332 2 23578
Q ss_pred EEEEecchhHHHHHHHHHHh-----------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEE
Q 007085 347 CIVFTQTKRDADRLAHAMAK-----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI 415 (618)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L~~-----------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~V 415 (618)
+|||....+.++..+..+.. .+.+..+.+.+++..+.+|+.....+..++||||++++..|.|+.+.+|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 99999988887766665533 3568889999999999999999999999999999999999999999999
Q ss_pred EEcCC------------------CCChhHHHHHhccCCCCCCcceEEEEechhh
Q 007085 416 IHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 416 I~~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
|+..+ |.+-++..||.|||||.+ +|.|+-+|+...
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDA 698 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhH
Confidence 97432 456667789999999995 899999998754
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=9.5e-22 Score=211.34 Aligned_cols=314 Identities=21% Similarity=0.295 Sum_probs=220.5
Q ss_pred CCChHHHHHHHHHHhCC----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..+.+-|..+++.+... ...|+.+.||||||.+|+-.+...+.+ +.++|||+|-.+|..|+.++|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 35788999999998766 568999999999999998877777654 78999999999999999999999
Q ss_pred hCCCCceEEEEcCCchHHH----HHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc--CCC----cHHH
Q 007085 196 SAPSLDTICVYGGTPISHQ----MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML--SVG----FAED 265 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~--~~~----~~~~ 265 (618)
.|. ..+.+++++-+..++ .+.......|||+|-..|+ ..+.++.+|||||-|.-. ... ...+
T Consensus 268 rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 268 RFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred HhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 987 777888877665444 3444456899999966554 358899999999999532 211 1222
Q ss_pred HHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcc-----hHHHHHHHHH
Q 007085 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-----PSIIGQLITE 340 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~ 340 (618)
+ .++..-..++++|+-||||.=+....+..- ....+.+...........+............ ..++..+-+.
T Consensus 340 v-A~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 340 V-AVLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred H-HHHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 2 233333468999999999876544444211 1122222222221112233333222222222 4556666666
Q ss_pred hhcCCcEEEEecchhHH------------------------------------------------------------HHH
Q 007085 341 HAKGGKCIVFTQTKRDA------------------------------------------------------------DRL 360 (618)
Q Consensus 341 ~~~~~~~lVf~~~~~~~------------------------------------------------------------~~l 360 (618)
+..++++|+|.|.+-.+ +++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 77889999999987432 566
Q ss_pred HHHHHhc---CCeeeecCcCCHH--HHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC------------C
Q 007085 361 AHAMAKS---YNCEPLHGDISQS--QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------T 423 (618)
Q Consensus 361 ~~~L~~~---~~~~~lhg~~~~~--~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~------------~ 423 (618)
++.|.+. .++..+..+.+.. .-+.+++.|.+|+.+|||.|+++..|.|+|+++.|...|.+. .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 6666553 3455666665543 346789999999999999999999999999999888766542 3
Q ss_pred hhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 424 SETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 424 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
...+.|-.||+||.+++|.+++-....+..
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 455689999999999999988877655433
No 114
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=6.1e-22 Score=194.75 Aligned_cols=326 Identities=17% Similarity=0.243 Sum_probs=221.6
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
...|...+.++...+.|+++.-...+.++.+-+..+..++-+++.++||||||...-...+...... ...+.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v~ 95 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGVA 95 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------cccee
Confidence 4467788999999999998877778888888899999999999999999999986555555554331 24588
Q ss_pred EEcCcHHHHHHHHHHHHHhCCCCceEEEEc-CCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 178 VLAPTRELAKQVEKEFHESAPSLDTICVYG-GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
+..|.+.-|.+++.++.+-. ++.+-.- +.++. .........-+-+||.++|++......+ +..+++||+||||.
T Consensus 96 CTQprrvaamsva~RVadEM---Dv~lG~EVGysIr-fEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahE 170 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEM---DVTLGEEVGYSIR-FEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHE 170 (699)
T ss_pred ecCchHHHHHHHHHHHHHHh---ccccchhcccccc-ccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhh
Confidence 88999999999888776532 1111000 00000 0000000111235788888776666554 88999999999994
Q ss_pred -ccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCC-cchHHH
Q 007085 257 -MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-EKPSII 334 (618)
Q Consensus 257 -~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 334 (618)
.+..+...-+.+-+..-+++.++|+||||+.. ..+..|+.++..+.+... ..++.++...... .....+
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~------~PvEi~Yt~e~erDylEaai 241 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGT------HPVEIFYTPEPERDYLEAAI 241 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCCC------CceEEEecCCCChhHHHHHH
Confidence 22222222222222333479999999999875 456677777777765321 2233333332222 223344
Q ss_pred HHHHHHhh--cCCcEEEEecchhHHHHHHHHHHh----------cCCeeeecCcCCHHHHHHHHHHHhcC-----CccEE
Q 007085 335 GQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRDG-----RFNIL 397 (618)
Q Consensus 335 ~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~----------~~~~~~lhg~~~~~~r~~i~~~f~~g-----~~~vL 397 (618)
..+++.+. ..+.+|||....++++..++.+.+ .++|..+| +.+++.|++..... ..+|+
T Consensus 242 rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV 317 (699)
T KOG0925|consen 242 RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV 317 (699)
T ss_pred HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE
Confidence 55555443 367899999999999999988864 24677777 55555666555422 36899
Q ss_pred EEcCccccCCCCCCccEEEEcCC------------------CCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 398 IATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 398 VaT~~~~~GlDi~~~~~VI~~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|+|++++..+.++.+.+||+-.+ |.+-.+..||.||+||. ++|+|+.+|++.
T Consensus 318 vstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 318 VSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999999996432 55777889999999998 789999999875
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=1.4e-20 Score=204.66 Aligned_cols=126 Identities=22% Similarity=0.426 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~ 410 (618)
.++..+.+...++.++||||++++.++.+++.|.+. +++..+|+++++.+|.++++.|+.|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 344444444556789999999999999999999764 8999999999999999999999999999999999999999999
Q ss_pred CccEEEEcC-----CCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 411 NVDLIIHYE-----LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 411 ~~~~VI~~~-----~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
++++||++| .|.+..+|+||+||++|. ..|.|+++.+..+......+
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 999999998 788999999999999998 68999999887654444433
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=9.4e-21 Score=208.57 Aligned_cols=300 Identities=17% Similarity=0.137 Sum_probs=179.0
Q ss_pred ChHHHHHHHHHHhC----------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 122 LFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 122 l~~~Q~~~i~~i~~----------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
++++|.+|+..+.. .+..+|+.+||||||++++..+...+ . ....+++|||+|+++|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~------~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E------LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h------hcCCCeEEEEECcHHHHHHHHH
Confidence 78999999987632 24699999999999998765554433 2 1236789999999999999999
Q ss_pred HHHHhCCCCceEEEEcCCchHHHHHHhh-cCCCEEEEChHHHHHHHHhc--CCCCCCc-ceEEEccchhccCCCcHHHHH
Q 007085 192 EFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRN--ALNLSEV-QFVVLDEADQMLSVGFAEDVE 267 (618)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~--~~~~~~~-~~vViDEaH~~~~~~~~~~~~ 267 (618)
.+.++..... ....+.......+. ....|+|+|.+.|...+... .....+. -+||+||||+.. ...+.
T Consensus 312 ~f~~~~~~~~----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~----~~~~~ 383 (667)
T TIGR00348 312 EFQSLQKDCA----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ----YGELA 383 (667)
T ss_pred HHHhhCCCCC----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc----chHHH
Confidence 9998764211 11122222223333 24689999999998644331 1111122 289999999863 23444
Q ss_pred HHHHHCCCCCcEEEEEeeCchHH----HHHHHHhcCCCcEE-EeccCCcccccCCeEEEEEec-----------------
Q 007085 268 VILERLPQNRQSMMFSATMPPWI----RSLTNKYLKNPLTV-DLVGDSDQKLADGISLYSIAT----------------- 325 (618)
Q Consensus 268 ~il~~l~~~~~~l~lSAT~~~~~----~~~~~~~l~~~~~i-~~~~~~~~~~~~~~~~~~~~~----------------- 325 (618)
..+...-++..+++|||||.... .......+.++... .+...........+.......
T Consensus 384 ~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 384 KNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred HHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 44433334678999999996321 11111001111100 000000000000000000000
Q ss_pred -------cCCc--------------------chHHHHHHHHHh----h-cCCcEEEEecchhHHHHHHHHHHhcC-----
Q 007085 326 -------SMYE--------------------KPSIIGQLITEH----A-KGGKCIVFTQTKRDADRLAHAMAKSY----- 368 (618)
Q Consensus 326 -------~~~~--------------------~~~~l~~~l~~~----~-~~~~~lVf~~~~~~~~~l~~~L~~~~----- 368 (618)
.... .......+++.. . ...+++|||.++..|..+++.|.+.+
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 0000 001111122111 1 24799999999999999998885532
Q ss_pred -CeeeecCcCCHH---------------------HHHHHHHHHhc-CCccEEEEcCccccCCCCCCccEEEEcCCCCChh
Q 007085 369 -NCEPLHGDISQS---------------------QRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHYELPNTSE 425 (618)
Q Consensus 369 -~~~~lhg~~~~~---------------------~r~~i~~~f~~-g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~ 425 (618)
.+.++++..+.+ ..+.++++|++ +..+|||+++++.+|+|.|.+++++..-+..+.
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h- 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH- 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-
Confidence 233444432221 22468888976 678999999999999999999999887766654
Q ss_pred HHHHHhccCCCC
Q 007085 426 TFVHRTGRTGRA 437 (618)
Q Consensus 426 ~~~Qr~GR~gR~ 437 (618)
.++|.+||+.|.
T Consensus 623 ~LlQai~R~nR~ 634 (667)
T TIGR00348 623 GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHHhccc
Confidence 589999999994
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=8.4e-22 Score=207.27 Aligned_cols=295 Identities=22% Similarity=0.272 Sum_probs=194.0
Q ss_pred CChHHHHHHHHHHh----CC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAM----QG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.++.+|..||..+. ++ +.+|+++.||+|||.++ ++++..+++. +...++|+|+-+++|+.|.+..+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------chhheeeEEechHHHHHHHHHHHHH
Confidence 58999999998665 34 34999999999999988 5555566552 2356899999999999999999999
Q ss_pred hCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc-----CCCCCCcceEEEccchhccCCCcHHHHHHHH
Q 007085 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-----~~~~~~~~~vViDEaH~~~~~~~~~~~~~il 270 (618)
+.|............ ....+.|.|+|++.+....... .+....+++||||||||= ....+..++
T Consensus 238 ~~P~~~~~n~i~~~~-------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~ 306 (875)
T COG4096 238 FLPFGTKMNKIEDKK-------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSIL 306 (875)
T ss_pred hCCCccceeeeeccc-------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHH
Confidence 998766554433222 1125799999999998776554 345667999999999984 455666777
Q ss_pred HHCCCCCcEEEEEeeCchHHHHHHHHhc-CCC------------------cEEEeccC--C-----------cccccCCe
Q 007085 271 ERLPQNRQSMMFSATMPPWIRSLTNKYL-KNP------------------LTVDLVGD--S-----------DQKLADGI 318 (618)
Q Consensus 271 ~~l~~~~~~l~lSAT~~~~~~~~~~~~l-~~~------------------~~i~~~~~--~-----------~~~~~~~~ 318 (618)
..+..-. +++||||...+......++ ..| ..+.+.-+ . +......+
T Consensus 307 dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 7764333 3449999764333222333 211 11111000 0 00000000
Q ss_pred ---EEEEEeccC------CcchHHHHHHHHHh-hc------CCcEEEEecchhHHHHHHHHHHhcCC------eeeecCc
Q 007085 319 ---SLYSIATSM------YEKPSIIGQLITEH-AK------GGKCIVFTQTKRDADRLAHAMAKSYN------CEPLHGD 376 (618)
Q Consensus 319 ---~~~~~~~~~------~~~~~~l~~~l~~~-~~------~~~~lVf~~~~~~~~~l~~~L~~~~~------~~~lhg~ 376 (618)
.+.+...+. ......+...+.+. .+ -.|+||||.+..+|+.+.+.|...++ |..|.++
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 000000000 01112222222221 11 36999999999999999999976443 5566666
Q ss_pred CCHHHHHHHHHHHhc--CCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC
Q 007085 377 ISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~--g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
-.+. +..++.|.. .-..|.|+.+++..|||+|.|..+|++..-.|...|.|++||.-|.
T Consensus 465 ~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred chhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 4433 334555544 3367888889999999999999999999999999999999999994
No 118
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.88 E-value=2.9e-21 Score=208.08 Aligned_cols=320 Identities=18% Similarity=0.224 Sum_probs=218.8
Q ss_pred CChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|+.||++.++|+.- .-+.|++.++|.|||+..+-.+.....+.............|||||. .|+-.|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 478999999998752 46799999999999997654333333332222222234558999995 8999999999999
Q ss_pred CCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCC
Q 007085 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
+|.+++....|....+...+..-+.++|+|++++.+.+.+.. +.-.+|.++|+||-|-+.+. ...+.+.++.+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 998877776666655555555555689999999999765543 22357889999999988763 56666667777544
Q ss_pred CcEEEEEeeCc-hHHHHHHHHh----------------------------------------------------------
Q 007085 277 RQSMMFSATMP-PWIRSLTNKY---------------------------------------------------------- 297 (618)
Q Consensus 277 ~~~l~lSAT~~-~~~~~~~~~~---------------------------------------------------------- 297 (618)
+.+++|.||. +.+.+++..|
T Consensus 1130 -hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1130 -HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred -ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4577888973 2223222221
Q ss_pred ---cCC-C-cEE--------------------------E-eccCCccccc----------------CCeEEEEEe-----
Q 007085 298 ---LKN-P-LTV--------------------------D-LVGDSDQKLA----------------DGISLYSIA----- 324 (618)
Q Consensus 298 ---l~~-~-~~i--------------------------~-~~~~~~~~~~----------------~~~~~~~~~----- 324 (618)
+.+ | ..| . .+........ .+..-....
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~ 1288 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPD 1288 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcch
Confidence 000 0 000 0 0000000000 000000000
Q ss_pred -----------------ccCCcchHHHHHHHHHhh---------------cCCcEEEEecchhHHHHHHHHHHhc-C-C-
Q 007085 325 -----------------TSMYEKPSIIGQLITEHA---------------KGGKCIVFTQTKRDADRLAHAMAKS-Y-N- 369 (618)
Q Consensus 325 -----------------~~~~~~~~~l~~~l~~~~---------------~~~~~lVf~~~~~~~~~l~~~L~~~-~-~- 369 (618)
....-|...+.+++.+.. .++++||||+.+..++.+.+.|.+. + .
T Consensus 1289 la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsV 1368 (1549)
T KOG0392|consen 1289 LAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSV 1368 (1549)
T ss_pred HHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCce
Confidence 011124555666666432 2479999999999999999988654 2 2
Q ss_pred -eeeecCcCCHHHHHHHHHHHhcC-CccEEE-EcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEE
Q 007085 370 -CEPLHGDISQSQRERTLSAFRDG-RFNILI-ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 370 -~~~lhg~~~~~~r~~i~~~f~~g-~~~vLV-aT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
...+.|..++.+|.++.++|+++ .++||+ +|.+.+.|+|+..+++||+++-.||+..-.|.+.||+|.|++..+-++
T Consensus 1369 tymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1369 TYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred eEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 33678999999999999999998 678765 667899999999999999999999999999999999999988765444
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.88 E-value=5.2e-20 Score=183.89 Aligned_cols=166 Identities=22% Similarity=0.329 Sum_probs=129.8
Q ss_pred CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchh
Q 007085 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~ 355 (618)
..|+|++||||.+.-.+... ...+..+-.....+...+ .+........+++.++.+...++.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQiIRPTGLlDP~i---evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQIIRPTGLLDPEI---EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEeecCCCCCCCce---eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999999875433221 112222212222222222 2333444556777777777778899999999999
Q ss_pred HHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC-----ChhHHHH
Q 007085 356 DADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN-----TSETFVH 429 (618)
Q Consensus 356 ~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~-----~~~~~~Q 429 (618)
.++.|.++|.+. +++..+|++...-+|.+|+.+++.|.++|||..+.+-+|||+|.|..|.++|+.. |-.+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999775 9999999999999999999999999999999999999999999999999998764 8889999
Q ss_pred HhccCCCCCCcceEEEEechh
Q 007085 430 RTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 430 r~GR~gR~g~~g~~~~~~~~~ 450 (618)
-||||.|. -.|.++++...-
T Consensus 538 tIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhh
Confidence 99999997 467888887643
No 120
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.88 E-value=1.3e-21 Score=202.91 Aligned_cols=332 Identities=18% Similarity=0.224 Sum_probs=223.3
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+|.+||.-.++|+. .+.+.|+..++|.|||..+ ++.+..+.+. +....-|||||... .+.|.+++.+|
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~------g~~gpHLVVvPsST-leNWlrEf~kw 470 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQI------GNPGPHLVVVPSST-LENWLREFAKW 470 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHc------CCCCCcEEEecchh-HHHHHHHHHHh
Confidence 38899999999865 4578899999999999765 5666666542 22345799999855 47799999999
Q ss_pred CCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHH-hcCCCCCCcceEEEccchhccCCCcHHHHHHHHH
Q 007085 197 APSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~-~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~ 271 (618)
||.+++...+|......+.+..- ..++|||+|+......-. +..+.-.+|+++|+||.|.+.+.. ...+..++.
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~ 549 (941)
T KOG0389|consen 471 CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS 549 (941)
T ss_pred CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc
Confidence 99999999998876555544332 258999999987742111 111224568899999999987763 344444443
Q ss_pred HCCCCCcEEEEEeeCc-hHHHHHHHHh-----------------------------------------------------
Q 007085 272 RLPQNRQSMMFSATMP-PWIRSLTNKY----------------------------------------------------- 297 (618)
Q Consensus 272 ~l~~~~~~l~lSAT~~-~~~~~~~~~~----------------------------------------------------- 297 (618)
. + ....|++|.||- +.+.+++...
T Consensus 550 I-~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 I-N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred c-c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3 2 455677888862 2222111110
Q ss_pred -----cC-CCc---EEEeccCC-----------------------c---cc-----------------------------
Q 007085 298 -----LK-NPL---TVDLVGDS-----------------------D---QK----------------------------- 313 (618)
Q Consensus 298 -----l~-~~~---~i~~~~~~-----------------------~---~~----------------------------- 313 (618)
+. -|. .|..+.-. . ..
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 00 000 00000000 0 00
Q ss_pred --------------------------------c------cCCeEEEEEeccCCcchHHHHHHHHHhhc-CCcEEEEecch
Q 007085 314 --------------------------------L------ADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTK 354 (618)
Q Consensus 314 --------------------------------~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~lVf~~~~ 354 (618)
+ ...+.......-...|...|..++.+..+ +.+||||....
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 0 00000000011122355566666666543 68999999999
Q ss_pred hHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCC--ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHh
Q 007085 355 RDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRT 431 (618)
Q Consensus 355 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~--~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~ 431 (618)
...+.|...|.. .+....+.|.+.-.+|+.+++.|...+ ..+|++|.+.+.|||+..+++||++|...+|-+-.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 999999999965 488888999999999999999998765 45688999999999999999999999999999999999
Q ss_pred ccCCCCCCcceEEEEechhhHHHHHHHHHHhc
Q 007085 432 GRTGRAGKKGSAILIYTDQQARQVKSIERDVG 463 (618)
Q Consensus 432 GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 463 (618)
.|++|.|++..+.++-.-.+....+.|.+..+
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHHHHHHHHHH
Confidence 99999998776665544333333344444333
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.5e-19 Score=198.27 Aligned_cols=142 Identities=23% Similarity=0.416 Sum_probs=120.9
Q ss_pred HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC
Q 007085 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 333 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~ 411 (618)
++..+......+.++||||++++.++.+++.|.+. +++..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|+
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~ 514 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPE 514 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccC
Confidence 33444344456789999999999999999999764 88999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCC-----CCChhHHHHHhccCCCCCCcceEEEEech---------hhHHHHHHHHHHhcCCcccCCccccc
Q 007085 412 VDLIIHYEL-----PNTSETFVHRTGRTGRAGKKGSAILIYTD---------QQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 412 ~~~VI~~~~-----p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
+++||+++. |.+...|+||+||+||. ..|.|+++++. .+...++.++..++.....+|.-.++
T Consensus 515 v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 591 (652)
T PRK05298 515 VSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKK 591 (652)
T ss_pred CcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHH
Confidence 999999886 67999999999999997 78999999984 45566777777777777766654433
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=6.7e-20 Score=195.85 Aligned_cols=287 Identities=22% Similarity=0.369 Sum_probs=192.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
.++.+.+++.--+.|+..|+--...+..+++.-+.||||.|||. |.+.+...+.. .+.++++|+||..|+.
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~--------kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK--------KGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh--------cCCeEEEEecCHHHHH
Confidence 34455666655557999999999999999999999999999997 43333323222 2678999999999999
Q ss_pred HHHHHHHHhCCCCc---eEE-EEcCCchHHHHH---Hhh-cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 188 QVEKEFHESAPSLD---TIC-VYGGTPISHQMR---ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 188 q~~~~l~~~~~~~~---~~~-~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
|+++.+.++..... +.+ .|+..+.....+ .+. .+++|+|+|.+-|...+.. +.-.++++|++|++|.++.
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHh
Confidence 99999999875332 223 334434433332 233 3599999999888766554 2224789999999998753
Q ss_pred CC-----------cHH-----------------------HHHHHHHHC--------CCCCcEEEEEeeCchHH-H-HHHH
Q 007085 260 VG-----------FAE-----------------------DVEVILERL--------PQNRQSMMFSATMPPWI-R-SLTN 295 (618)
Q Consensus 260 ~~-----------~~~-----------------------~~~~il~~l--------~~~~~~l~lSAT~~~~~-~-~~~~ 295 (618)
.. |.+ .+++++... .+..++++.|||..+.- + .+..
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 21 111 111111110 13457899999986532 2 2222
Q ss_pred HhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecc---hhHHHHHHHHHHhc-CCee
Q 007085 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT---KRDADRLAHAMAKS-YNCE 371 (618)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~---~~~~~~l~~~L~~~-~~~~ 371 (618)
..+. . . +..........+..+... .....+..+++.... -.|||++. ++.+++++++|.+. +++.
T Consensus 298 eLlg-F---e-vG~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~ 366 (1187)
T COG1110 298 ELLG-F---E-VGSGGEGLRNIVDIYVES----ESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAE 366 (1187)
T ss_pred HHhC-C---c-cCccchhhhheeeeeccC----ccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEE
Confidence 2221 1 0 011111111112222221 445566677777655 57999999 99999999999875 9999
Q ss_pred eecCcCCHHHHHHHHHHHhcCCccEEEEc----CccccCCCCCC-ccEEEEcCCC
Q 007085 372 PLHGDISQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLIIHYELP 421 (618)
Q Consensus 372 ~lhg~~~~~~r~~i~~~f~~g~~~vLVaT----~~~~~GlDi~~-~~~VI~~~~p 421 (618)
.+|+. +++.++.|..|++++||.+ .++-+|||+|. +.++|+++.|
T Consensus 367 ~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 367 LIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred Eeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 99974 2678999999999999976 47899999998 7899998877
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=2.1e-19 Score=204.22 Aligned_cols=329 Identities=18% Similarity=0.192 Sum_probs=197.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHH----HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 108 QDIVAALARRGISKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~----~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+.+.+.+...++. ++|.|.++++ .+..++++++.||||+|||++|++|++..+.. +.++||.+||+
T Consensus 233 ~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---------~~~vvi~t~t~ 302 (850)
T TIGR01407 233 SLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---------EKPVVISTNTK 302 (850)
T ss_pred HHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---------CCeEEEEeCcH
Confidence 4566666666766 8999998766 45567889999999999999999999876531 45799999999
Q ss_pred HHHHHHHHH----HHHhCC-CCceEEEEcCCchH----------------------------------------------
Q 007085 184 ELAKQVEKE----FHESAP-SLDTICVYGGTPIS---------------------------------------------- 212 (618)
Q Consensus 184 ~La~q~~~~----l~~~~~-~~~~~~~~~~~~~~---------------------------------------------- 212 (618)
+|++|+... +.+.++ +++++++.|..++-
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 999998653 333332 34444444332110
Q ss_pred -------------------------HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC------
Q 007085 213 -------------------------HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG------ 261 (618)
Q Consensus 213 -------------------------~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~------ 261 (618)
...+.....++||||++..|++.+......+.+..++||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 0000111247899999999988775544345677899999999874210
Q ss_pred -c-----HH----------------------------------------------------------------HHHHHHH
Q 007085 262 -F-----AE----------------------------------------------------------------DVEVILE 271 (618)
Q Consensus 262 -~-----~~----------------------------------------------------------------~~~~il~ 271 (618)
+ .. .+...+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 00 0000000
Q ss_pred H-----------C-------------------------------------CCCCcEEEEEeeCchH-HHHHHHHhcCCC-
Q 007085 272 R-----------L-------------------------------------PQNRQSMMFSATMPPW-IRSLTNKYLKNP- 301 (618)
Q Consensus 272 ~-----------l-------------------------------------~~~~~~l~lSAT~~~~-~~~~~~~~l~~~- 301 (618)
. + +....+|++|||+... ........+.-+
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 0123568899998631 122333322211
Q ss_pred -cEEEeccCCcccccCCeEEEEEeccCC-----cchH---HHHHHHHHh--hcCCcEEEEecchhHHHHHHHHHHhc---
Q 007085 302 -LTVDLVGDSDQKLADGISLYSIATSMY-----EKPS---IIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKS--- 367 (618)
Q Consensus 302 -~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~--- 367 (618)
....+. ............+ ++.+.. .... .+...+.+. ...+++|||+++.+.++.+++.|...
T Consensus 623 ~~~~~~~-~spf~~~~~~~l~-v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~ 700 (850)
T TIGR01407 623 VHFNTIE-PTPLNYAENQRVL-IPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEF 700 (850)
T ss_pred cccceec-CCCCCHHHcCEEE-ecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccc
Confidence 111111 1111111111111 111110 1111 222222221 23568999999999999999998652
Q ss_pred CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCcc--EEEEcCCCCC----------------------
Q 007085 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD--LIIHYELPNT---------------------- 423 (618)
Q Consensus 368 ~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~--~VI~~~~p~~---------------------- 423 (618)
....++..+.. ..|.++++.|++++..||++|+.+.+|||++... .||+...|..
T Consensus 701 ~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f 779 (850)
T TIGR01407 701 EGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPF 779 (850)
T ss_pred cCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCch
Confidence 12233333333 5788999999999999999999999999999855 5777666531
Q ss_pred --------hhHHHHHhccCCCCCCcceEEEEech
Q 007085 424 --------SETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 424 --------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
+..+.|.+||+-|..++.-++++++.
T Consensus 780 ~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 780 YDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred HHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 12246999999998655434444443
No 124
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2.2e-21 Score=191.36 Aligned_cols=293 Identities=22% Similarity=0.228 Sum_probs=199.3
Q ss_pred CCChHHHHHHHHHHhCC---CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..++|||++++..+.-+ ++.||..|+|+|||++-+.++... ...+||+|.+...++||..+++.|
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------------cccEEEEecCccCHHHHHHHHHhh
Confidence 56899999999998865 568999999999999876555432 457999999999999999999988
Q ss_pred CC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh--------cCCCCCCcceEEEccchhccCCCcHHHH
Q 007085 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (618)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--------~~~~~~~~~~vViDEaH~~~~~~~~~~~ 266 (618)
.. +-.+...+.... +....++.|+|+|+.++..--++ +.+.-..|.++|+||+|.+. ...+
T Consensus 369 sti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP----A~MF 439 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP----AKMF 439 (776)
T ss_pred cccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch----HHHH
Confidence 64 122333332222 22345689999999887521111 11235679999999999874 4445
Q ss_pred HHHHHHCCCCCcEEEEEeeCchHHHHHHH-HhcCCCcE----------------EEeccC---------CcccccCCeEE
Q 007085 267 EVILERLPQNRQSMMFSATMPPWIRSLTN-KYLKNPLT----------------VDLVGD---------SDQKLADGISL 320 (618)
Q Consensus 267 ~~il~~l~~~~~~l~lSAT~~~~~~~~~~-~~l~~~~~----------------i~~~~~---------~~~~~~~~~~~ 320 (618)
++++......+ .|.+|||+-.+...... +|+--|.. +...+. .+.........
T Consensus 440 RRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 440 RRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 55555554444 38899998432221110 01111110 000000 00000011111
Q ss_pred EEEeccCCcchHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcC-CccEEE
Q 007085 321 YSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFNILI 398 (618)
Q Consensus 321 ~~~~~~~~~~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~vLV 398 (618)
..+......|......+++.+. .+.++|||..++-.....+-.|.+ ..|.|..++.+|.+|++.|+-+ +++.++
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 2233344457777777777664 478999999988887777766644 4588999999999999999864 577788
Q ss_pred EcCccccCCCCCCccEEEEcCCCC-ChhHHHHHhccCCCCC
Q 007085 399 ATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAG 438 (618)
Q Consensus 399 aT~~~~~GlDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g 438 (618)
.+.+....+|+|.++++|+..... +-.+..||.||+.|+.
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 889999999999999999988877 7889999999999974
No 125
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=204.04 Aligned_cols=329 Identities=19% Similarity=0.254 Sum_probs=202.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCC
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~ 171 (618)
+...+|+.... .++..++.-+...+|+|||+.|++.+..+ ...-+++.+|+|||++.| -+.+.+.
T Consensus 137 es~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala--------- 205 (1518)
T COG4889 137 ESPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA--------- 205 (1518)
T ss_pred cCCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------
Confidence 34466766654 56777777778889999999999998865 335667889999999874 3444443
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhC-CCCceEEEEcCCchHHH-----------------------HH--HhhcCCCEE
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQ-----------------------MR--ALDYGVDAV 225 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~-~~~~~~~~~~~~~~~~~-----------------------~~--~~~~~~~Il 225 (618)
..++|+++|+.+|..|..+++..-. ..+....++++.....- .+ ....+--||
T Consensus 206 -~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vv 284 (1518)
T COG4889 206 -AARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVV 284 (1518)
T ss_pred -hhheEeecchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEE
Confidence 2579999999999999998876532 23444444443222110 11 111346799
Q ss_pred EEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC-----CCCcEEEEEeeCchH---HHHHHH--
Q 007085 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPW---IRSLTN-- 295 (618)
Q Consensus 226 v~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-----~~~~~l~lSAT~~~~---~~~~~~-- 295 (618)
++|++.+...-+.....+..+++||+||||+.........-...+.++. +..+.+.|||||.-. .+..+.
T Consensus 285 FsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~ 364 (1518)
T COG4889 285 FSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDH 364 (1518)
T ss_pred EEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhc
Confidence 9999999877777677789999999999998643221111111111221 124568999998421 111111
Q ss_pred ----------------------------HhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHH-------HHHHHH
Q 007085 296 ----------------------------KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII-------GQLITE 340 (618)
Q Consensus 296 ----------------------------~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~l~~ 340 (618)
..+.+...+.+.-+. ..+...+..........-..+-. .-+.++
T Consensus 365 s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~-~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr 443 (1518)
T COG4889 365 SAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDK-EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKR 443 (1518)
T ss_pred cceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEech-hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhh
Confidence 112222222111110 00000000000000000001111 111111
Q ss_pred hh-------------cCCcEEEEecchhHHHHHHHHHHh--------------cC--CeeeecCcCCHHHHHHHHHH---
Q 007085 341 HA-------------KGGKCIVFTQTKRDADRLAHAMAK--------------SY--NCEPLHGDISQSQRERTLSA--- 388 (618)
Q Consensus 341 ~~-------------~~~~~lVf~~~~~~~~~l~~~L~~--------------~~--~~~~lhg~~~~~~r~~i~~~--- 388 (618)
.. +-++++-||.++++...+++.+.+ .+ .|..+.|.|+..+|.+.+..
T Consensus 444 ~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~ 523 (1518)
T COG4889 444 NGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNT 523 (1518)
T ss_pred ccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCC
Confidence 11 114678899999888777665432 12 34455689999999554432
Q ss_pred HhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC
Q 007085 389 FRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 389 f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
|...+|+||--..++++|||+|.++.||++++-.++.+.+|.+||+.|.
T Consensus 524 ~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 524 FEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 3567899999889999999999999999999999999999999999994
No 126
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.7e-21 Score=197.87 Aligned_cols=304 Identities=18% Similarity=0.252 Sum_probs=189.8
Q ss_pred HHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH----hCCCCce
Q 007085 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE----SAPSLDT 202 (618)
Q Consensus 127 ~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~----~~~~~~~ 202 (618)
++++++|..+.-+||+++||||||...-..+++.=... ........+-|.-|+|.-|...++++.. +...+..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s---~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFAS---EQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCC---ccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 34566777777799999999999985443333332111 1111234788889999777666655543 2223333
Q ss_pred EEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHH-------CCC
Q 007085 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-------LPQ 275 (618)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~-------l~~ 275 (618)
.+-+.++- .....|.+.|.+.|++.+..+.+ +..++.|||||||.-.- .-..+.-++.+ ...
T Consensus 339 qIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 339 QIRFDGTI--------GEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEEecccc--------CCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhh
Confidence 44343332 34578999999999998887654 88999999999995211 11222222222 222
Q ss_pred ------CCcEEEEEeeCchHHHHHHHHhcCC-CcEEEeccCCcccccCCeEE-EEEeccCCcchHHHHHHHHHh--hcCC
Q 007085 276 ------NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISL-YSIATSMYEKPSIIGQLITEH--AKGG 345 (618)
Q Consensus 276 ------~~~~l~lSAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~--~~~~ 345 (618)
..++|+||||+.-....-....+.. |..+.+.. ... .+.+ +......+...+.....++.| -+.+
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA---RQf--PVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA---RQF--PVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeec---ccC--ceEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 5678999999864322222233332 22332211 111 1111 112222233333444433333 3567
Q ss_pred cEEEEecchhHHHHHHHHHHhcCC--------------------------------------------------------
Q 007085 346 KCIVFTQTKRDADRLAHAMAKSYN-------------------------------------------------------- 369 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~~~-------------------------------------------------------- 369 (618)
.+|||+....+++.|++.|++.++
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 899999999999999999976432
Q ss_pred --------------------------------------------eeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcccc
Q 007085 370 --------------------------------------------CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 370 --------------------------------------------~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
|..+.+-++.+++.++++.-.+|...++|||++++.
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 111233345566777777777889999999999999
Q ss_pred CCCCCCccEEEEcC--------CCC----------ChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 406 GLDVPNVDLIIHYE--------LPN----------TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 406 GlDi~~~~~VI~~~--------~p~----------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
.|.||.+.+||+.. .-. +-+.--||.|||||.| +|.||-+|+..
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99999999999743 322 3444569999999996 78999998754
No 127
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.85 E-value=5.2e-20 Score=181.62 Aligned_cols=330 Identities=17% Similarity=0.228 Sum_probs=217.9
Q ss_pred HcCCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 116 RRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
...+..|.|+|++.+...+ ++..+++..++|.|||+.++..+. .+.. ....|||||. ++...|++.+.
T Consensus 193 ~kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~-yyra---------EwplliVcPA-svrftWa~al~ 261 (689)
T KOG1000|consen 193 PKLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIAR-YYRA---------EWPLLIVCPA-SVRFTWAKALN 261 (689)
T ss_pred HHHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHH-HHhh---------cCcEEEEecH-HHhHHHHHHHH
Confidence 3345668899999998755 567899999999999998854433 3322 2348999995 78889999999
Q ss_pred HhCCCCceE-EEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC
Q 007085 195 ESAPSLDTI-CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 195 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
.++|.+-.+ ++..+... ...+-....|.|.+++++..+-. .+.-..+.+||+||.|.+.+.. ....+.++..+
T Consensus 262 r~lps~~pi~vv~~~~D~---~~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dll 335 (689)
T KOG1000|consen 262 RFLPSIHPIFVVDKSSDP---LPDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLL 335 (689)
T ss_pred HhcccccceEEEecccCC---ccccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHH
Confidence 999865542 22222221 11122335789999999865432 2334568999999999887653 44466677777
Q ss_pred CCCCcEEEEEeeCc----h---------------HHHHHHHHhcCCC---------------------------------
Q 007085 274 PQNRQSMMFSATMP----P---------------WIRSLTNKYLKNP--------------------------------- 301 (618)
Q Consensus 274 ~~~~~~l~lSAT~~----~---------------~~~~~~~~~l~~~--------------------------------- 301 (618)
....++|++|.||. . ...++...|+.-.
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999983 1 1222222222100
Q ss_pred ---------cEEEec--cCCcccccCC---eEEEEEec---------------cCCcchHHHHHHHHH-----hhcCCcE
Q 007085 302 ---------LTVDLV--GDSDQKLADG---ISLYSIAT---------------SMYEKPSIIGQLITE-----HAKGGKC 347 (618)
Q Consensus 302 ---------~~i~~~--~~~~~~~~~~---~~~~~~~~---------------~~~~~~~~l~~~l~~-----~~~~~~~ 347 (618)
..+.++ .......... -..+.... ....|...+.+.+.. ..+..+.
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 000000 0000000000 00000000 001122223333333 2346799
Q ss_pred EEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCC-ccE-EEEcCccccCCCCCCccEEEEcCCCCCh
Q 007085 348 IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR-FNI-LIATDVAARGLDVPNVDLIIHYELPNTS 424 (618)
Q Consensus 348 lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~-~~v-LVaT~~~~~GlDi~~~~~VI~~~~p~~~ 424 (618)
+|||......+.+..++.+ ++....|.|..++.+|....+.|+..+ ..| +++..++.+||++..++.||+...+|++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 9999999999999999966 488999999999999999999998644 444 5566789999999999999999999999
Q ss_pred hHHHHHhccCCCCCCcceEEEEechh----hHHHHHHHHHHh
Q 007085 425 ETFVHRTGRTGRAGKKGSAILIYTDQ----QARQVKSIERDV 462 (618)
Q Consensus 425 ~~~~Qr~GR~gR~g~~g~~~~~~~~~----~~~~~~~l~~~l 462 (618)
--++|.-.|++|.|++..+.+.|.-. |...+..+.+.|
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred ceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999999988877666432 334455555444
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.85 E-value=3e-19 Score=190.82 Aligned_cols=320 Identities=19% Similarity=0.217 Sum_probs=199.7
Q ss_pred CChHHHHHHHHHHhCC----------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAMQG----------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~----------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
.++|||++.+.-+.++ ..+|+...+|+|||+..+..+...+...+. ..+ .-.++||||| ..|+..|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~-~~~-~~~k~lVV~P-~sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQ-AKP-LINKPLVVAP-SSLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcC-ccc-cccccEEEcc-HHHHHHHH
Confidence 4899999999876542 238999999999999775555544433211 100 1267999999 59999999
Q ss_pred HHHHHhCC--CCceEEEEcCCchHHH--HHHh-----hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC
Q 007085 191 KEFHESAP--SLDTICVYGGTPISHQ--MRAL-----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (618)
Q Consensus 191 ~~l~~~~~--~~~~~~~~~~~~~~~~--~~~~-----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~ 261 (618)
++|.+|.. .+....+++.....+. ...+ .....|++.+++.+.+.++. +....++++|+||.|++-+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch-
Confidence 99999875 4555555555553111 1111 11257889999999876654 44678999999999998764
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeeCc-hHHHH------------------------------------------------
Q 007085 262 FAEDVEVILERLPQNRQSMMFSATMP-PWIRS------------------------------------------------ 292 (618)
Q Consensus 262 ~~~~~~~il~~l~~~~~~l~lSAT~~-~~~~~------------------------------------------------ 292 (618)
...+...+..+. ..+.|++|.||- +++.+
T Consensus 392 -~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 455666666664 455688899973 11111
Q ss_pred ---HHHHhc------------CCCcEEEeccCC------------cc---c---------------ccC-----------
Q 007085 293 ---LTNKYL------------KNPLTVDLVGDS------------DQ---K---------------LAD----------- 316 (618)
Q Consensus 293 ---~~~~~l------------~~~~~i~~~~~~------------~~---~---------------~~~----------- 316 (618)
+...++ .-...+.++-.. .. . +..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 111111 000000000000 00 0 000
Q ss_pred -----C-----------eEEEEEeccCCcchHHHHHHHHHhhc--CCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcC
Q 007085 317 -----G-----------ISLYSIATSMYEKPSIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDI 377 (618)
Q Consensus 317 -----~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~ 377 (618)
. ............+...+..++....+ ..+++++.+.+...+.+..... +++.+..+||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 0 00000000001122333333322211 1233333344444444333332 268899999999
Q ss_pred CHHHHHHHHHHHhcCC---ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEec
Q 007085 378 SQSQRERTLSAFRDGR---FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 378 ~~~~r~~i~~~f~~g~---~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
+..+|+.+++.|++.. .-.|.+|.+.+.||++-.++-||.||++|||+.-.|.+.||.|.||+..|+++-.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999998744 3357788999999999999999999999999999999999999999999887753
No 129
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=1.8e-19 Score=170.38 Aligned_cols=183 Identities=42% Similarity=0.672 Sum_probs=148.5
Q ss_pred cCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.++..++++|.++++.+... +++++.++||+|||.+++.+++..+... ...+++|++|+..++.|+.+.+.+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 45678999999999999988 9999999999999999988888876541 135799999999999999999998
Q ss_pred hCCCC--ceEEEEcCCchHHHHHHhhcCC-CEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHH
Q 007085 196 SAPSL--DTICVYGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (618)
Q Consensus 196 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~ 272 (618)
.++.. .......+.........+.... +|+++|++.+.+.+.........++++|+||+|.+....+...+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 87542 2333444444344444444454 99999999999988887667788999999999999875578888999998
Q ss_pred CCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 273 l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
+++..+++++|||+++........++.+...+..
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 8889999999999999888888888875555543
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.2e-18 Score=184.14 Aligned_cols=312 Identities=17% Similarity=0.216 Sum_probs=202.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
.+++.|.-..-.++.+ -|..+.||+|||+++.+|++...+. +..+.|++|+..||.+.++++..++..
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 4888888888777765 5779999999999999998877765 778999999999999999999988764
Q ss_pred -CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCcceEEEccchhccCC-----------
Q 007085 200 -LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV----------- 260 (618)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~~~----------- 260 (618)
+.+.++.+..+...+.... .++|+++|...| +++|+.. ......+.++||||+|.++-.
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 5566666666655444433 589999999877 3444332 122456889999999977411
Q ss_pred ----CcHHHHHHHHHHCCCC--------CcEEEEEe--------------------------------------------
Q 007085 261 ----GFAEDVEVILERLPQN--------RQSMMFSA-------------------------------------------- 284 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~~--------~~~l~lSA-------------------------------------------- 284 (618)
.....+..+...+... .+.+.+|.
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 1223334444444322 12222222
Q ss_pred ------------------------------------------------------------------eCchHHHHHHHHhc
Q 007085 285 ------------------------------------------------------------------TMPPWIRSLTNKYL 298 (618)
Q Consensus 285 ------------------------------------------------------------------T~~~~~~~~~~~~l 298 (618)
|......++...|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 11111111111000
Q ss_pred CCCcEEEeccCCcccccCCeEEEEEeccCCcchH-HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCc
Q 007085 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGD 376 (618)
Q Consensus 299 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~ 376 (618)
.+ .+ .++...+......... +......|.. ++.++.+.+..+.++||.|.+++.++.+.+.|.+. +++.++++.
T Consensus 385 l~--Vv-~IPtnkp~~R~d~~d~-iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 385 LG--VS-VIPPNKPNIREDEADR-VYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred Cc--EE-ECCCCCCceeecCCCc-eEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccC
Confidence 00 00 0000000000000001 1111222333 34445556678999999999999999999999765 888888887
Q ss_pred CCHHHHHHHHHHHhcCC-ccEEEEcCccccCCCCCCc---------------cEEEEcCCCCChhHHHHHhccCCCCCCc
Q 007085 377 ISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPNV---------------DLIIHYELPNTSETFVHRTGRTGRAGKK 440 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~-~~vLVaT~~~~~GlDi~~~---------------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~ 440 (618)
....+- +|+. ..|+ -.|.|||++++||.||.-- -|||-...+.|..--.|..||+||.|.+
T Consensus 461 ~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDp 537 (764)
T PRK12326 461 NDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDP 537 (764)
T ss_pred chHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCC
Confidence 443332 2322 2343 4689999999999998622 2788888899998899999999999999
Q ss_pred ceEEEEechhhH
Q 007085 441 GSAILIYTDQQA 452 (618)
Q Consensus 441 g~~~~~~~~~~~ 452 (618)
|.+..|++-.|.
T Consensus 538 Gss~f~lSleDd 549 (764)
T PRK12326 538 GSSVFFVSLEDD 549 (764)
T ss_pred CceeEEEEcchh
Confidence 999988876654
No 131
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.1e-19 Score=181.69 Aligned_cols=327 Identities=15% Similarity=0.132 Sum_probs=224.4
Q ss_pred HHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
++.+--+....+|.++++.+.++++.++.-.|-+||.+++.+.....+... .....+++.|++++++...+-+
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------HATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-------cccceecchhHHHHhhccCCce
Confidence 344555678899999999999999999999999999999988887776552 2345789999999988765443
Q ss_pred HHhCC---CCc--eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCC----CCcceEEEccchhccCCC---
Q 007085 194 HESAP---SLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL----SEVQFVVLDEADQMLSVG--- 261 (618)
Q Consensus 194 ~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~----~~~~~vViDEaH~~~~~~--- 261 (618)
.-... ..+ ++-.+.+.+..........+.++|++.|+++........+.. -+..++++||+|.++...
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~ 431 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKAL 431 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhH
Confidence 22111 111 222334444444444555678999999999976665544433 345789999999876541
Q ss_pred cHHHHHHHHHHC-----CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEec---cCCcchHH
Q 007085 262 FAEDVEVILERL-----PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT---SMYEKPSI 333 (618)
Q Consensus 262 ~~~~~~~il~~l-----~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 333 (618)
...+++.+++.+ ..+.+++-.+||+...++.+...+-.+....... +..+.-...+..+..+. ...++...
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~-DGSPs~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTI-DGSPSSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEe-cCCCCccceEEEeCCCCCCcchhhhhhH
Confidence 123444444443 2478999999999887766555443333322111 11111111122111111 11122222
Q ss_pred HH---HHHH-HhhcCCcEEEEecchhHHHHHHHHHHhc---------CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEc
Q 007085 334 IG---QLIT-EHAKGGKCIVFTQTKRDADRLAHAMAKS---------YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (618)
Q Consensus 334 l~---~~l~-~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT 400 (618)
+. .++. -...+-++|.||+.++.|+.+....++- -.+..+.|+...++|++|...+..|+..-+|+|
T Consensus 511 i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 22 2222 2234669999999999999887655431 135567899999999999999999999999999
Q ss_pred CccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEec
Q 007085 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 401 ~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
++++-||||..++.|++..+|.++..+.|..||+||..++..++.+..
T Consensus 591 NALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 591 NALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred chhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 999999999999999999999999999999999999999888776654
No 132
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=1e-18 Score=184.96 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=115.8
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
.|-.||.+.++.+-.+...+|++||-+|||.+...++ +.+++. .....+|+++|+++|++|+...+...+..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 4778999999999999999999999999998654444 444432 34668999999999999999988776521
Q ss_pred --CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh---cCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC
Q 007085 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~---~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
...+.+.+..+.+.+.. .-.|.|+|+-|+.+..++.. ......++++||+||+|.+.++.-.-.++.++..+
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 11222233322222211 12489999999999888876 34457889999999999998776556666666655
Q ss_pred CCCcEEEEEeeCch
Q 007085 275 QNRQSMMFSATMPP 288 (618)
Q Consensus 275 ~~~~~l~lSAT~~~ 288 (618)
.|.+|++|||+.+
T Consensus 661 -~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 -PCPFLVLSATIGN 673 (1330)
T ss_pred -CCCeeEEecccCC
Confidence 6889999999854
No 133
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.6e-19 Score=192.06 Aligned_cols=319 Identities=18% Similarity=0.248 Sum_probs=215.3
Q ss_pred CChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
++.+||.+.+.|+.+ +-+.|+..+||.|||+.- +.++..+++.+.. ....||+||+..|.+ |..++.+|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~-----~GP~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQM-----QGPFLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHccc-----CCCeEEeccccccCC-chhhcccc
Confidence 589999999999865 357899999999999865 5666666664433 334799999977765 99999999
Q ss_pred CCCCceEEEEcCCchHHH--HHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC
Q 007085 197 APSLDTICVYGGTPISHQ--MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
.|.+..+...|....... ......+++||++|++.+.. ....+.--+|.++||||.|+|.+. ...+...+...-
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y 542 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHY 542 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhccc
Confidence 988776665554332221 12223569999999999975 233344568999999999998663 333333333322
Q ss_pred CCCcEEEEEeeCch-HHHHHHH-----------------HhcC-------------------------------------
Q 007085 275 QNRQSMMFSATMPP-WIRSLTN-----------------KYLK------------------------------------- 299 (618)
Q Consensus 275 ~~~~~l~lSAT~~~-~~~~~~~-----------------~~l~------------------------------------- 299 (618)
...+.+++|.||.. .+.+++. .|+.
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 34445666777521 0000000 0000
Q ss_pred ------CCcEEEec------------------------cC----C-----------------ccccc----CCeEEEE--
Q 007085 300 ------NPLTVDLV------------------------GD----S-----------------DQKLA----DGISLYS-- 322 (618)
Q Consensus 300 ------~~~~i~~~------------------------~~----~-----------------~~~~~----~~~~~~~-- 322 (618)
.|..+..+ .. . .+-.. ..+...+
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 00000000 00 0 00000 0000000
Q ss_pred -EeccCCcchHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcCCHHHHHHHHHHHhcCC---ccE
Q 007085 323 -IATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR---FNI 396 (618)
Q Consensus 323 -~~~~~~~~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~---~~v 396 (618)
.......|..++..++-.+. .++++|.||......+.+.++|. +.++...+.|....++|-..++.|..-. ..+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 01122335566666665553 38899999999999999999995 4588889999999999999999998755 456
Q ss_pred EEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 397 LVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|++|.+...|+|++.++.||+||..|++.+..|+.-|++|.|+...+-++....
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 889999999999999999999999999999999999999999887777665544
No 134
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.1e-18 Score=189.53 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=105.6
Q ss_pred cchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccC
Q 007085 329 EKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (618)
Q Consensus 329 ~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~G 406 (618)
.|...+...+.. +..+.++||||++++.++.+.+.|.+ .+++.++|+ .+.+|+..+..|..+...|+|||++++||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 355555555543 45688999999999999999999975 489999997 58899999999999999999999999999
Q ss_pred CCCC---Ccc-----EEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 407 LDVP---NVD-----LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 407 lDi~---~~~-----~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
+||+ .|. +||..+.|.+...|.|++||+||.|.+|.+++|++..|.
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9998 443 458899999999999999999999999999999988765
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=5.3e-18 Score=183.80 Aligned_cols=314 Identities=21% Similarity=0.239 Sum_probs=195.6
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS-- 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~-- 199 (618)
+++.|.-. .+.-.+.-|..+.||+|||+++.+|++...+. +..+.||+|+..||.+.++++..++..
T Consensus 83 ~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 83 HFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred cchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 55556543 43334568899999999999999999877665 788999999999999999999998864
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhccCC------------
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV------------ 260 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~~~------------ 260 (618)
+.+.++.+..+...+..... ++|+++|...| +++|.... .....+.++||||+|.++=.
T Consensus 152 l~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 56666666666555554443 89999999987 44443321 12378999999999987411
Q ss_pred ----CcHHHHHHHHHHCCC-------------------CCcEEEEEeeCchHHHHH------------------------
Q 007085 261 ----GFAEDVEVILERLPQ-------------------NRQSMMFSATMPPWIRSL------------------------ 293 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~-------------------~~~~l~lSAT~~~~~~~~------------------------ 293 (618)
.....+..++..+.. ..+.+.+|-.-...++.+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 122233333333311 111122221100000000
Q ss_pred -----HHHh-c-CCC------cEEEeccCC--------------------------------------------------
Q 007085 294 -----TNKY-L-KNP------LTVDLVGDS-------------------------------------------------- 310 (618)
Q Consensus 294 -----~~~~-l-~~~------~~i~~~~~~-------------------------------------------------- 310 (618)
...+ + .+. -.+.++...
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 0000 0 000 001111100
Q ss_pred --------------------------cccccCCeEEEEEeccCCcchH-HHHHHHHHhhcCCcEEEEecchhHHHHHHHH
Q 007085 311 --------------------------DQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHA 363 (618)
Q Consensus 311 --------------------------~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~ 363 (618)
.+........ .+..+..+|.. ++.++.+.+..+.++||-|.+++..+.+...
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~ 468 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNL 468 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHH
Confidence 0000000000 01112222333 3344445566799999999999999999999
Q ss_pred HHhc-CCeeeecCcCCHHHHHHHHHHHhcCC-ccEEEEcCccccCCCCCC------------------------------
Q 007085 364 MAKS-YNCEPLHGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPN------------------------------ 411 (618)
Q Consensus 364 L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~-~~vLVaT~~~~~GlDi~~------------------------------ 411 (618)
|.+. +++.+++......+-+ |+. ..|+ -.|.|||++++||.||.=
T Consensus 469 L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (913)
T PRK13103 469 LKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRH 545 (913)
T ss_pred HHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHH
Confidence 9764 7777777764433322 222 3443 568999999999999941
Q ss_pred --c-----cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 412 --V-----DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 412 --~-----~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
| -+||--..+.|..--.|..||+||.|.+|.+-+|++-.|.
T Consensus 546 e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 546 QQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 2788888888888889999999999999999988876553
No 136
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.80 E-value=5.7e-18 Score=181.23 Aligned_cols=121 Identities=20% Similarity=0.337 Sum_probs=101.1
Q ss_pred chHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCC--ccEEEEcCcccc
Q 007085 330 KPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAAR 405 (618)
Q Consensus 330 ~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~--~~vLVaT~~~~~ 405 (618)
|+..|..+++.+ ..++++|||+...+..+.|..+|.-+ +....|.|....++|+..+++|+... ...|++|.....
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 334444455544 35789999999999999999999764 77788899999999999999999865 456889999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 406 GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|||+..++.||+||..||+..-.|.--|++|.|+...+.++..-.
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 999999999999999999999999999999999877766654433
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=3.1e-16 Score=175.87 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=74.4
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC--ccEEEEc
Q 007085 342 AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--VDLIIHY 418 (618)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~--~~~VI~~ 418 (618)
..++++||++++.+..+.+++.|... +.+ ...+... .+.+++++|++++..||++|..+.+|||+|. ...||+.
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 34679999999999999999998643 333 3334222 3456899999988899999999999999973 5556666
Q ss_pred CCCC----C--------------------------hhHHHHHhccCCCCCCcceEEEEech
Q 007085 419 ELPN----T--------------------------SETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 419 ~~p~----~--------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
..|. + +..+.|.+||.-|...+.-+++++++
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 6553 2 12245999999998654334444443
No 138
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.75 E-value=5.8e-17 Score=166.18 Aligned_cols=119 Identities=18% Similarity=0.344 Sum_probs=102.8
Q ss_pred cchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHH-hcCCeeeecCcCCHHHHHHHHHHHhcCC-ccEEEEcCcccc
Q 007085 329 EKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR-FNILIATDVAAR 405 (618)
Q Consensus 329 ~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~i~~~f~~g~-~~vLVaT~~~~~ 405 (618)
.|...+..++..+ ..++++|+|++..+.++.+.++|. +.+....+.|.....+|..++.+|+..+ .-+|++|.+.+-
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 4566666776665 358899999999999999999995 4588999999999999999999999865 455889999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 406 GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
|||+..++.||+||..|++..-.|.+.||+|.|++..+.++.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 999999999999999999999999999999999876655443
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=4.1e-15 Score=159.38 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=76.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhcCCeeee-cCcCCHHHHHHHHHHHhcC----CccEEEEcCccccCCCC--------
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPL-HGDISQSQRERTLSAFRDG----RFNILIATDVAARGLDV-------- 409 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~l-hg~~~~~~r~~i~~~f~~g----~~~vLVaT~~~~~GlDi-------- 409 (618)
.++.+||.+.+...++.+++.|...+...++ .|+.+ .+..++++|++. ...||++|..+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4679999999999999999999776544333 45432 446688888874 78999999999999999
Q ss_pred --CCccEEEEcCCCCCh-------------------------hHHHHHhccCCCCCCc---ceEEEEech
Q 007085 410 --PNVDLIIHYELPNTS-------------------------ETFVHRTGRTGRAGKK---GSAILIYTD 449 (618)
Q Consensus 410 --~~~~~VI~~~~p~~~-------------------------~~~~Qr~GR~gR~g~~---g~~~~~~~~ 449 (618)
..++.||+...|..+ ..+.|-+||.-|...+ |..+++...
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 237889987776321 2245888999997554 444444433
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=8.1e-16 Score=165.17 Aligned_cols=316 Identities=16% Similarity=0.198 Sum_probs=193.5
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-- 198 (618)
.+++.|.-.--.+.. ..|..+.||-|||+++.+|++-..+. +..|-||+.+..||..-++++..++.
T Consensus 78 r~ydVQliGglvLh~--G~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 78 RPYDVQIIGGIILDL--GSVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CcCchHHHHHHHHhc--CCeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 367777665544444 46899999999999999988655544 66688888889999887777776554
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhccCC-----------
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV----------- 260 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~~~----------- 260 (618)
++.+.++........+.. ...|+|+++|...| +++|+... ...+.+.++||||+|.++=.
T Consensus 147 GLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 355555555544444333 34589999999887 55554321 22466889999999977411
Q ss_pred -----CcHHHHHHHHHHCCC-------CCcEEEEEeeCchHHHHH-----------------HH-----H-hcC-CC---
Q 007085 261 -----GFAEDVEVILERLPQ-------NRQSMMFSATMPPWIRSL-----------------TN-----K-YLK-NP--- 301 (618)
Q Consensus 261 -----~~~~~~~~il~~l~~-------~~~~l~lSAT~~~~~~~~-----------------~~-----~-~l~-~~--- 301 (618)
.+...+..++..+.. ..+.+.+|..=...++.+ +. . ++. +.
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 123333344444432 112233332110001100 00 0 000 00
Q ss_pred ---cEEEeccCC--------------------------------------------------------------------
Q 007085 302 ---LTVDLVGDS-------------------------------------------------------------------- 310 (618)
Q Consensus 302 ---~~i~~~~~~-------------------------------------------------------------------- 310 (618)
-.+.++...
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 000000000
Q ss_pred -cccccCCeEEE------EEeccCCcchHH-HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHH
Q 007085 311 -DQKLADGISLY------SIATSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQ 381 (618)
Q Consensus 311 -~~~~~~~~~~~------~~~~~~~~~~~~-l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~ 381 (618)
...++.+.+.. .+......|... +.++.+.+.++.++||.|.+++.++.+.+.|.+ .+++.++++.....+
T Consensus 385 ~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~E 464 (925)
T PRK12903 385 RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE 464 (925)
T ss_pred CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhH
Confidence 00000000000 111222234333 344445567789999999999999999999976 488888888644332
Q ss_pred HHHHHHHHhcCC-ccEEEEcCccccCCCCCCcc--------EEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 382 RERTLSAFRDGR-FNILIATDVAARGLDVPNVD--------LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 382 r~~i~~~f~~g~-~~vLVaT~~~~~GlDi~~~~--------~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
- .|+. ..|+ -.|.|||++++||.||.--. |||....|.|..--.|..||+||.|.+|.+-.|++-.|.
T Consensus 465 A-~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 465 A-EIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred H-HHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 2 2322 4453 57999999999999996432 899999998888888999999999999998888876543
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.72 E-value=3.6e-15 Score=170.43 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=78.8
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhcCC---eeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC--ccEEEE
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--VDLIIH 417 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~---~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~--~~~VI~ 417 (618)
.++++||++++.+..+.+++.|..... ..++.-+++...|.++++.|++++..||++|..+.+|||+|. +.+||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975422 223333444456788999999988899999999999999997 478888
Q ss_pred cCCCC-Ch-----------------------------hHHHHHhccCCCCCCcceEEEEech
Q 007085 418 YELPN-TS-----------------------------ETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 418 ~~~p~-~~-----------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
...|. ++ ..+.|.+||+-|..++.-+++++++
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 77664 11 2235899999998654334444443
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=1.4e-16 Score=148.75 Aligned_cols=149 Identities=23% Similarity=0.238 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHHhC-------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAMQ-------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~-------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+.... . +++|+||+..|++|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C-EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c-ceeEecCHHHHHHHHHHHH
Confidence 489999999998884 57899999999999998875555443 1 7999999999999999999
Q ss_pred HHhCCCCceEEEE-------------cCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC-----------CCCCCcceE
Q 007085 194 HESAPSLDTICVY-------------GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-----------LNLSEVQFV 249 (618)
Q Consensus 194 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-----------~~~~~~~~v 249 (618)
..+.......... ................+++++|.+.|........ .....+++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7665433222111 1111122233334568999999999987765421 223467899
Q ss_pred EEccchhccCCCcHHH-HHHHHHHCCCCCcEEEEEeeCc
Q 007085 250 VLDEADQMLSVGFAED-VEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 250 ViDEaH~~~~~~~~~~-~~~il~~l~~~~~~l~lSAT~~ 287 (618)
|+||||++. ... +..++. .+...+|.|||||.
T Consensus 151 I~DEaH~~~----~~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYP----SDSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTH----HHHHHHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcC----CHHHHHHHHc--CCCCeEEEEEeCcc
Confidence 999999974 333 566666 56778999999986
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=3.4e-16 Score=139.09 Aligned_cols=143 Identities=42% Similarity=0.586 Sum_probs=109.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQM 215 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 215 (618)
+++++.++||+|||.+++..+...... ....+++|++|++.+++|+.+.+..... ...+..+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 468999999999999888777766543 2256899999999999999999988775 45566666655555554
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
.......+|+++|++.+...+.........+++|||||+|.+....+...............+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 44556789999999999888776655567899999999999876654443323444456788999999997
No 144
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.70 E-value=2.7e-16 Score=137.93 Aligned_cols=118 Identities=47% Similarity=0.821 Sum_probs=107.0
Q ss_pred cchHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccC
Q 007085 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (618)
Q Consensus 329 ~~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~G 406 (618)
.|...+..++.... .+.++||||++.+.++.+++.|.+ ...+..+|+.++..+|..+++.|+++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56666777776653 567999999999999999999976 4789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEE
Q 007085 407 LDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 407 lDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
+|+|.+++||++++|++...+.|++||++|.++.+.|+++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988887764
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.69 E-value=2.1e-15 Score=163.04 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|.-.. +.-.+..|+.+.||.|||+++.+|++-..+. +..|-||+++..||.+-++++..++. +
T Consensus 77 ~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 77 HFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 666675554 3334578999999999999999998654443 67799999999999999988877654 4
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhcc
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~ 258 (618)
+.+.++..+.+...+.. ...++|+++|...| +++|+... .....+.++||||+|.++
T Consensus 146 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 55666666555544443 34579999999776 34443321 124668899999999764
No 146
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=7.3e-16 Score=158.59 Aligned_cols=118 Identities=14% Similarity=0.233 Sum_probs=94.8
Q ss_pred chHHHHHHHHHh--hcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhc--CCccE-EEEcCcc
Q 007085 330 KPSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRD--GRFNI-LIATDVA 403 (618)
Q Consensus 330 ~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~--g~~~v-LVaT~~~ 403 (618)
|.....++++.. ....+++|..+-......+...|.+. +....+||.....+|+.+++.|.. +..+| |++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 444444444443 24567888888778788888888764 778899999999999999999964 43444 5566788
Q ss_pred ccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 404 ARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 404 ~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
++|||+-..+|+|.+|+.||+.-..|...|+.|.|++..+++.-
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEE
Confidence 89999999999999999999999999999999999988877654
No 147
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=3.6e-16 Score=157.06 Aligned_cols=279 Identities=19% Similarity=0.211 Sum_probs=178.6
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
-++-++||.||||.-+ ++++.. ....++.-|.+.||.++++.+.+. ++.+-+++|.........
T Consensus 193 Ii~H~GPTNSGKTy~A----Lqrl~~---------aksGvycGPLrLLA~EV~~r~na~--gipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA----LQRLKS---------AKSGVYCGPLRLLAHEVYDRLNAL--GIPCDLLTGEERRFVLDN- 256 (700)
T ss_pred EEEEeCCCCCchhHHH----HHHHhh---------hccceecchHHHHHHHHHHHhhhc--CCCccccccceeeecCCC-
Confidence 3677899999999755 344433 345799999999999999999886 355555555433111100
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHHHHHHHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNK 296 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~~~ 296 (618)
-..+..+-||.++..- -..+++.||||++.|.+...+-.|...+--+ ....++.. .+.+..+...
T Consensus 257 -~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~ 322 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRK 322 (700)
T ss_pred -CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHH
Confidence 1225677788666531 3467899999999998876555554433222 22222211 1222233333
Q ss_pred hc---CCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc--CCee
Q 007085 297 YL---KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCE 371 (618)
Q Consensus 297 ~l---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~ 371 (618)
.+ .+...+...+.. .+.. -.+.+..-+.++.++. -|+|.+++.+..+...+.+. .+|+
T Consensus 323 i~k~TGd~vev~~YeRl--------------~pL~-v~~~~~~sl~nlk~GD--CvV~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 323 ILKMTGDDVEVREYERL--------------SPLV-VEETALGSLSNLKPGD--CVVAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHhhcCCeeEEEeeccc--------------Ccce-ehhhhhhhhccCCCCC--eEEEeehhhHHHHHHHHHHhcCcceE
Confidence 22 222222221111 1111 1113334444554554 35566788888888888654 5699
Q ss_pred eecCcCCHHHHHHHHHHHhc--CCccEEEEcCccccCCCCCCccEEEEcCCC---------CChhHHHHHhccCCCCC--
Q 007085 372 PLHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYELP---------NTSETFVHRTGRTGRAG-- 438 (618)
Q Consensus 372 ~lhg~~~~~~r~~i~~~f~~--g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p---------~~~~~~~Qr~GR~gR~g-- 438 (618)
+|.|.++++.|..--..|++ ++++||||||++++|+|+ +++-||+++.- ....+..|..|||||.+
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999987 889999999999999999 89999988764 36778899999999975
Q ss_pred -CcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 439 -KKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 439 -~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
..|.+.++.. +.+..+.+.|+...++
T Consensus 465 ~~~G~vTtl~~----eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 465 YPQGEVTTLHS----EDLKLLKRILKRPVEP 491 (700)
T ss_pred CcCceEEEeeH----hhHHHHHHHHhCCchH
Confidence 3466666553 2344455555544443
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.68 E-value=2.3e-15 Score=148.98 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=91.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcC-CccE-EEEcCccccCCCCCCccEEEEcCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG-RFNI-LIATDVAARGLDVPNVDLIIHYEL 420 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~v-LVaT~~~~~GlDi~~~~~VI~~~~ 420 (618)
.-+.|||.+.....+.+.-.|.+ ++.|..+.|.|++..|...++.|++. ++.| ||+-.+.++-+|+..+.+|+++|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 35789999999999999888866 59999999999999999999999874 4665 566688888899999999999999
Q ss_pred CCChhHHHHHhccCCCCCC--cceEEEEechh
Q 007085 421 PNTSETFVHRTGRTGRAGK--KGSAILIYTDQ 450 (618)
Q Consensus 421 p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 450 (618)
+|++.--.|...|++|.|+ +-.++.|+.++
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999986 44566666544
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.66 E-value=3.6e-14 Score=155.52 Aligned_cols=307 Identities=18% Similarity=0.180 Sum_probs=176.4
Q ss_pred CChHHHHHHHHHHhCC------CC--EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAMQG------RD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~------~~--~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (618)
.-..+|.+|++.+..- +. ++-.|.||||||++=.-.|. .+. ....+++..|..-.|.|.-|.-+.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLs------d~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALR------DDKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhC------CCCCCceEEEEccccceeccchHH
Confidence 3456999999987651 11 56689999999985432222 221 123456777777777777777666
Q ss_pred HHHhCC--CCceEEEEcCCchHHH-------------------------------------------HHHhh--------
Q 007085 193 FHESAP--SLDTICVYGGTPISHQ-------------------------------------------MRALD-------- 219 (618)
Q Consensus 193 l~~~~~--~~~~~~~~~~~~~~~~-------------------------------------------~~~~~-------- 219 (618)
+++.+. +-..+++.|+....+- ...+.
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 665432 2233444433211100 00000
Q ss_pred cCCCEEEEChHHHHHHHHhc---CCCCC--C--cceEEEccchhccCCCcHHHHHHHHHHCC-CCCcEEEEEeeCchHHH
Q 007085 220 YGVDAVVGTPGRVIDLIKRN---ALNLS--E--VQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIR 291 (618)
Q Consensus 220 ~~~~Ilv~T~~~l~~~l~~~---~~~~~--~--~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~~~~~~ 291 (618)
-..+|+|||++.++...... ...+. . -+.|||||+|.+-.. ....+..++..+. -..++++||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 02689999999998766321 11111 1 257999999986432 2334444444332 46889999999999876
Q ss_pred HHHHHhc-----------C---CCcEEEe--ccCCc----------------------------ccccCCeEEEEEeccC
Q 007085 292 SLTNKYL-----------K---NPLTVDL--VGDSD----------------------------QKLADGISLYSIATSM 327 (618)
Q Consensus 292 ~~~~~~l-----------~---~~~~i~~--~~~~~----------------------------~~~~~~~~~~~~~~~~ 327 (618)
..+...+ . .+..|.. +.+.. ........ ..++++.
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a-~i~~~~~ 718 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLA-ELLSLSS 718 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceE-EEeecCC
Confidence 6544322 1 1222211 11000 00000011 1111111
Q ss_pred Cc-----chHHHHH-----HHHHhh--------cCCcE---EEEecchhHHHHHHHHHHhc-------CCeeeecCcCCH
Q 007085 328 YE-----KPSIIGQ-----LITEHA--------KGGKC---IVFTQTKRDADRLAHAMAKS-------YNCEPLHGDISQ 379 (618)
Q Consensus 328 ~~-----~~~~l~~-----~l~~~~--------~~~~~---lVf~~~~~~~~~l~~~L~~~-------~~~~~lhg~~~~ 379 (618)
.. ....+.. ++..+. .+++| ||-+.+++.+..++..|... +.+.++|+..+.
T Consensus 719 ~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l 798 (1110)
T TIGR02562 719 LPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPL 798 (1110)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChH
Confidence 11 1111111 111111 11222 67778888888888777532 347788999988
Q ss_pred HHHHHHHHHH----------------------hc----CCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhcc
Q 007085 380 SQRERTLSAF----------------------RD----GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGR 433 (618)
Q Consensus 380 ~~r~~i~~~f----------------------~~----g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR 433 (618)
..|..+++.+ .+ +...|+|+|+++|.|+|+ +.+++|. .|.++...+|+.||
T Consensus 799 ~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR 875 (1110)
T TIGR02562 799 LLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGR 875 (1110)
T ss_pred HHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhc
Confidence 8887777554 11 356899999999999999 7787765 56678889999999
Q ss_pred CCCCCC
Q 007085 434 TGRAGK 439 (618)
Q Consensus 434 ~gR~g~ 439 (618)
+.|.+.
T Consensus 876 ~~R~~~ 881 (1110)
T TIGR02562 876 VNRHRL 881 (1110)
T ss_pred cccccc
Confidence 999754
No 150
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.65 E-value=1.8e-14 Score=156.56 Aligned_cols=283 Identities=12% Similarity=0.096 Sum_probs=169.8
Q ss_pred EccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHH----H
Q 007085 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR----A 217 (618)
Q Consensus 142 ~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~ 217 (618)
.+.+|||||.+|+-.+-..+.. +.++|||+|...|+.|+.+.|++.|....++++++..+..++.+ .
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH
Confidence 3336999999998777766654 77899999999999999999999987566888888776654433 3
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc--CCC---c-HHHHHHHHHHCCCCCcEEEEEeeCchHHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML--SVG---F-AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~--~~~---~-~~~~~~il~~l~~~~~~l~lSAT~~~~~~ 291 (618)
......|||+|...++ ..+.++.+|||||-|.-. +.. + ...+.. +.....+..+|+.|||++-+..
T Consensus 237 ~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCCHHHH
Confidence 3445899999965544 358899999999999432 211 1 122222 2223358889999999987554
Q ss_pred HHHHHhcCCCcEEEeccCCcccccCCeEEEEEec-----cC-C----cchHHHHHHHHHhhcCCcEEEEecchhHH----
Q 007085 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-----SM-Y----EKPSIIGQLITEHAKGGKCIVFTQTKRDA---- 357 (618)
Q Consensus 292 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~-~----~~~~~l~~~l~~~~~~~~~lVf~~~~~~~---- 357 (618)
.....-. ...+.............+....... +. . --..++..+.+.+.++ ++|||.|.+-.+
T Consensus 309 ~~~~~g~--~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 309 ALVESGW--AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHhcCc--ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 4332211 0001000000001111111111100 00 0 1123444455555566 999999987543
Q ss_pred -------------------------------------------------------HHHHHHHHhcCCeeeecCcCCHHHH
Q 007085 358 -------------------------------------------------------DRLAHAMAKSYNCEPLHGDISQSQR 382 (618)
Q Consensus 358 -------------------------------------------------------~~l~~~L~~~~~~~~lhg~~~~~~r 382 (618)
+++++.|.+.++-..+. . .++
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~-r---~d~ 461 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV-T---SGG 461 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE-E---ECh
Confidence 33333333322211110 0 123
Q ss_pred HHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC------------ChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN------------TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 383 ~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~------------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
+.+++.|. ++.+|||+|+.++.=+. ++++.|+++|.+. ....+.|..||++|..+.|.+++...++
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 45788886 48999999993221111 3566776666432 2445679999999999999999886554
No 151
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.65 E-value=6.3e-16 Score=121.96 Aligned_cols=76 Identities=37% Similarity=0.754 Sum_probs=71.7
Q ss_pred HHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCC
Q 007085 363 AMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 363 ~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g 438 (618)
+|.+ .+.+..+|+++++.+|+++++.|++++..|||||+++++|||+|++++||++++|+++.+|.|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3433 489999999999999999999999999999999999999999999999999999999999999999999975
No 152
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=3.4e-14 Score=153.46 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+++.|.-. .+.-.+..|..+.||.|||+++.+|++-..+. +..|-||+++..||..-++++..++. +
T Consensus 86 ~ydVQliG--gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 86 HFDVQLIG--GMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred cchhHHHh--hhhhcCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 55555444 33334568999999999999999998776655 67799999999999998888877654 4
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCcceEEEccchhcc
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~ 258 (618)
+.+.++..+.+...+ .....++|+++|+..| +++|+.. ......+.++||||+|.++
T Consensus 155 Ltvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 556665555544433 3445789999999888 3333321 1235678999999999774
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.59 E-value=6.2e-13 Score=147.48 Aligned_cols=104 Identities=21% Similarity=0.389 Sum_probs=73.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhcCC-eeeecCcCCHHHHHHHHHHHhc----CCccEEEEcCccccCCCCCC--ccEE
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFRD----GRFNILIATDVAARGLDVPN--VDLI 415 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~lhg~~~~~~r~~i~~~f~~----g~~~vLVaT~~~~~GlDi~~--~~~V 415 (618)
..+.+||++++.+..+.+++.|..... ....++. ..+.++++.|++ ++..||++|..+.+|||+|. +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 345689999999999999999865432 2233443 346778877764 67789999999999999987 7889
Q ss_pred EEcCCCC----Ch--------------------------hHHHHHhccCCCCCCcceEEEEech
Q 007085 416 IHYELPN----TS--------------------------ETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 416 I~~~~p~----~~--------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
|+...|. ++ ..+.|.+||.-|..++.-+++++++
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 9877664 22 1235889999998554333444333
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.58 E-value=6.4e-13 Score=148.62 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHhcCC--eeeecCcCCHHHHHHHHHHHhcCCc-cEEEEcCccccCCCCCC--ccEEEEc
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPN--VDLIIHY 418 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~lhg~~~~~~r~~i~~~f~~g~~-~vLVaT~~~~~GlDi~~--~~~VI~~ 418 (618)
++++|||+++.+.++.+++.+..... ....++.. .+.++++.|++..- .++|+|..+.+|||++. ...||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 45899999999999999999976543 23344443 44478888877554 89999999999999988 4678887
Q ss_pred CCCC------------------------------ChhHHHHHhccCCCCCCc
Q 007085 419 ELPN------------------------------TSETFVHRTGRTGRAGKK 440 (618)
Q Consensus 419 ~~p~------------------------------~~~~~~Qr~GR~gR~g~~ 440 (618)
..|. -+..+.|.+||+-|...+
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 7664 122346999999996443
No 155
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=1.9e-13 Score=159.02 Aligned_cols=322 Identities=18% Similarity=0.192 Sum_probs=208.4
Q ss_pred CCChHHHHHHHHHHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~-----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
..++++|.+.++++.. ..+.++..++|.|||+..+..+...+.. . ....+.++++||+ +++.+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~-~----~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLES-I----KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhc-c----cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 4588999999988662 4678999999999998776555442211 1 0113579999996 88899999999
Q ss_pred HhCCCCc-eEEEEcCCch----HHHHH-HhhcC----CCEEEEChHHHHHHH-HhcCCCCCCcceEEEccchhccCCCcH
Q 007085 195 ESAPSLD-TICVYGGTPI----SHQMR-ALDYG----VDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 195 ~~~~~~~-~~~~~~~~~~----~~~~~-~~~~~----~~Ilv~T~~~l~~~l-~~~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
++.+.+. +...++.... ..... .+... ++++++|++.+...+ ....+.-..+..+|+||+|++.+.. .
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 9998888 6666665541 22222 22222 799999999997732 2223445678999999999976542 1
Q ss_pred HHHHHHHHHCCCCCcEEEEEeeCc-hHHHHHHH-----------------------------------------------
Q 007085 264 EDVEVILERLPQNRQSMMFSATMP-PWIRSLTN----------------------------------------------- 295 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~-~~~~~~~~----------------------------------------------- 295 (618)
.....+. .++... .+.+|.||. +.+.++..
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 1122222 222222 244555541 11110000
Q ss_pred ---HhcCCCcEEE--eccCC--------------------------------------cc----------cc--------
Q 007085 296 ---KYLKNPLTVD--LVGDS--------------------------------------DQ----------KL-------- 314 (618)
Q Consensus 296 ---~~l~~~~~i~--~~~~~--------------------------------------~~----------~~-------- 314 (618)
.++....... +.... .. ..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0000000000 00000 00 00
Q ss_pred ---cCCeEEEEEec--------------------------cCC-cchHHHHHHH-HH-hhcCC--cEEEEecchhHHHHH
Q 007085 315 ---ADGISLYSIAT--------------------------SMY-EKPSIIGQLI-TE-HAKGG--KCIVFTQTKRDADRL 360 (618)
Q Consensus 315 ---~~~~~~~~~~~--------------------------~~~-~~~~~l~~~l-~~-~~~~~--~~lVf~~~~~~~~~l 360 (618)
.+......... ... .|...+.+++ .. ...+. +++||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 00000000000 001 4556666666 33 34456 899999999999999
Q ss_pred HHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcC--CccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC
Q 007085 361 AHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG--RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 361 ~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g--~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
...|... +....++|.++.++|..+++.|.++ ...++++|.+...|+|+..+++||++|++|++....|.+.|++|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 9999776 5899999999999999999999986 455677888999999999999999999999999999999999999
Q ss_pred CCcceEEEEechh
Q 007085 438 GKKGSAILIYTDQ 450 (618)
Q Consensus 438 g~~g~~~~~~~~~ 450 (618)
|++..+.++....
T Consensus 808 gQ~~~v~v~r~i~ 820 (866)
T COG0553 808 GQKRPVKVYRLIT 820 (866)
T ss_pred cCcceeEEEEeec
Confidence 9887777665433
No 156
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.54 E-value=3.2e-13 Score=147.23 Aligned_cols=309 Identities=17% Similarity=0.247 Sum_probs=200.7
Q ss_pred ChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC-
Q 007085 122 LFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~- 199 (618)
..|+|.++++.+.+ +.+++|.+|+|||||+++-++++. +....++++++|..+.+..+++.+.+.+..
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 46788888887765 467999999999999998877765 133568999999999998888887766543
Q ss_pred --CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc-----HHHHHHHHHH
Q 007085 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-----AEDVEVILER 272 (618)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~-----~~~~~~il~~ 272 (618)
..++.++|...... .+....+|+|+||+++..+ . ..+.+++.|.||.|.+....- .-.++.+-.+
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHH
Confidence 33444444444332 2334469999999999655 2 578899999999998764320 1125666677
Q ss_pred CCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCC--c----chHHHHHHHHHhhcCCc
Q 007085 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY--E----KPSIIGQLITEHAKGGK 346 (618)
Q Consensus 273 l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~l~~~l~~~~~~~~ 346 (618)
+-++.+++.+|..+.+. +.+ ..+.....+++... .......+....+..... . ....+..+.......++
T Consensus 1286 ~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~-~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPS-VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHhheeEEEeehhhccc-hhh--ccccccceeecCcc-cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 77788899998887652 122 11212222222111 111111222221111111 1 11223334444456789
Q ss_pred EEEEecchhHHHHHHHHH-----------------------HhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcc
Q 007085 347 CIVFTQTKRDADRLAHAM-----------------------AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L-----------------------~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
.+||+++++.+..++..| ++.+++.+-|-+++..+...+...|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 999999999987666433 12244445588899999888889999999999887655
Q ss_pred ccCCCCCCccEEEE-----cC------CCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHH
Q 007085 404 ARGLDVPNVDLIIH-----YE------LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKS 457 (618)
Q Consensus 404 ~~GlDi~~~~~VI~-----~~------~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 457 (618)
-.|+-.. .+.||. || .+..+..+.|++|++.|+ +.|++++......++++
T Consensus 1441 ~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1441 CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH
Confidence 5555542 344443 22 355788899999999995 58999998777665554
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.51 E-value=1.8e-12 Score=138.94 Aligned_cols=290 Identities=17% Similarity=0.161 Sum_probs=180.0
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
-.+|.+|+|||||.+.+-++-..+ + .+..++|+|..+++|+.+.++.+++.. +.-...+...... ..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l-~-------~~~~~VLvVShRrSL~~sL~~rf~~~~--l~gFv~Y~d~~~~---~i 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDAL-K-------NPDKSVLVVSHRRSLTKSLAERFKKAG--LSGFVNYLDSDDY---II 117 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhc-c-------CCCCeEEEEEhHHHHHHHHHHHHhhcC--CCcceeeeccccc---cc
Confidence 479999999999975543333222 1 125689999999999999999998653 1111122111100 01
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHH-------HHHHHHHCCCCCcEEEEEeeCchHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED-------VEVILERLPQNRQSMMFSATMPPWI 290 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~-------~~~il~~l~~~~~~l~lSAT~~~~~ 290 (618)
.....+-|++..+.|.++.. -.+.++++|||||+-.++..-+.+. +..+...+.....+|+|-||+.+.+
T Consensus 118 ~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 11235778888888876542 2367799999999987655423222 2223344566788999999999999
Q ss_pred HHHHHHhcCCCcEEEeccCCcccccCCeEEE----------------------------------EEeccCCcchHHHHH
Q 007085 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLY----------------------------------SIATSMYEKPSIIGQ 336 (618)
Q Consensus 291 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~ 336 (618)
-+++..+..+.....++......-....... ...............
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~ 274 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSE 274 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHH
Confidence 9999887654433222211100000000000 000000123345666
Q ss_pred HHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc--c
Q 007085 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--D 413 (618)
Q Consensus 337 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~--~ 413 (618)
++..+..++++-||+.++..++.++++.... .++..+++..+.. .+ +. -++++|+|-|+++..|+++... +
T Consensus 275 L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred HHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhce
Confidence 7777778889999999999999999988664 4566666655444 22 22 3568999999999999998654 3
Q ss_pred EEEEcCCC--C--ChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 414 LIIHYELP--N--TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 414 ~VI~~~~p--~--~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
-|.-|=-| . +..+..|++||+-.. ...+.++++...
T Consensus 349 ~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 349 SMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 34444223 2 555689999999554 344666666543
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.49 E-value=1.8e-11 Score=125.15 Aligned_cols=286 Identities=20% Similarity=0.270 Sum_probs=193.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCCCC-ceE------EEEc---------------CCchHHHHHHhh----------
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESAPSL-DTI------CVYG---------------GTPISHQMRALD---------- 219 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~~~-~~~------~~~~---------------~~~~~~~~~~~~---------- 219 (618)
..|+||||+|++..|.++.+.+.++++.. .+. --++ .....+......
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 36899999999999999999998887641 100 0011 111112211111
Q ss_pred --------------cCCCEEEEChHHHHHHHHh------cCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC---CC-
Q 007085 220 --------------YGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQ- 275 (618)
Q Consensus 220 --------------~~~~Ilv~T~~~l~~~l~~------~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l---~~- 275 (618)
...|||||+|=-|...+.. ....++.+.++|||.||.++... -+.+..+++.+ |.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCC
Confidence 1589999999999877764 23457889999999999765432 23444444444 32
Q ss_pred --------------------CCcEEEEEeeCchHHHHHHHHhcCCCcE-EEeccCCc-----ccccCCeEEEEEeccCC-
Q 007085 276 --------------------NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSD-----QKLADGISLYSIATSMY- 328 (618)
Q Consensus 276 --------------------~~~~l~lSAT~~~~~~~~~~~~l~~~~~-i~~~~~~~-----~~~~~~~~~~~~~~~~~- 328 (618)
-+|+|++|+...+++..+....+.+..- +.+..... ..+...+.+.+...+..
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2599999999999999999886655432 22221111 12223333333322111
Q ss_pred ------cchHHHH-HHHHHhh---cCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEE
Q 007085 329 ------EKPSIIG-QLITEHA---KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (618)
Q Consensus 329 ------~~~~~l~-~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vL 397 (618)
.+.+... .++.... ....+|||+++--+-..+..+|++. +....+|.-.+..+-.++-..|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 1111111 1222222 4568999999999999999999754 888889988899999999999999999999
Q ss_pred EEcCccc--cCCCCCCccEEEEcCCCCChhHHHHHhccCCCCC------CcceEEEEechhhHHHHHHH
Q 007085 398 IATDVAA--RGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAG------KKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 398 VaT~~~~--~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g------~~g~~~~~~~~~~~~~~~~l 458 (618)
+.|.-+- +=..|..+.+||+|.+|..+.-|...+.-..... ....|.++++.-|.-.++.|
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9997443 3467889999999999999999988875554433 25789999999888766655
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.48 E-value=3.3e-12 Score=135.46 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=98.3
Q ss_pred chHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHHh-----------------------cCCeeeecCcCCHHHHHHH
Q 007085 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-----------------------SYNCEPLHGDISQSQRERT 385 (618)
Q Consensus 330 ~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-----------------------~~~~~~lhg~~~~~~r~~i 385 (618)
|+-+|.++|.... -+.++|||.++....+.+..+|.. ......|.|.....+|+.+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 4445556665443 378999999999999999888842 1124467889999999999
Q ss_pred HHHHhcCC----ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEec
Q 007085 386 LSAFRDGR----FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 386 ~~~f~~g~----~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
.+.|++-. ...||+|.+.+-|||+-.++-||+||..||+..-.|.|=|+.|.|+..-||++..
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 99998743 3469999999999999999999999999999999999999999999888888754
No 160
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.47 E-value=1.9e-13 Score=108.93 Aligned_cols=80 Identities=46% Similarity=0.866 Sum_probs=73.5
Q ss_pred HHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC
Q 007085 359 RLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 359 ~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
.+++.|.+ .+.+..+|+.++..+|.++++.|+++...|||+|+++++|+|++++++||++++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 35555644 48899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007085 438 G 438 (618)
Q Consensus 438 g 438 (618)
+
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 4
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2.1e-12 Score=141.16 Aligned_cols=119 Identities=22% Similarity=0.235 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~ 410 (618)
.++.++.+.+..+.|+||-|.+++..+.|...|.+ .++..++++.....+-+.|-++=+. -.|.|||++++||.||.
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIk 693 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIK 693 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcc
Confidence 34455555667899999999999999999999975 4888888777554443333332233 45899999999999996
Q ss_pred C--------ccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 411 N--------VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 411 ~--------~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
- =-+||--..+.|..--.|..||+||.|.+|.+-.|++-.|.
T Consensus 694 Lg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 694 LSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 2 23788888899999999999999999999998888876553
No 162
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=2.4e-11 Score=136.10 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHH----hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 118 GISKLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i----~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
.+..++|.|.+.+..+ ..+.++++.+|||+|||++.|.+++..+.+. ....++++++.|.....|..+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHHH
Confidence 4555699999887654 4568899999999999999999998876541 12368999999999999999999
Q ss_pred HHh
Q 007085 194 HES 196 (618)
Q Consensus 194 ~~~ 196 (618)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 884
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.37 E-value=6.6e-12 Score=126.90 Aligned_cols=154 Identities=19% Similarity=0.115 Sum_probs=92.7
Q ss_pred HHHHHHHHHhC-------------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 125 IQKAVLEPAMQ-------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 125 ~Q~~~i~~i~~-------------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
||.+++.+++. ...+|+..++|+|||++++..+. .+..... ......+|||||. .+..||..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~---~~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP---QRGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT---TSS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc---cccccceeEeecc-chhhhhhh
Confidence 68888877632 24599999999999987755444 3333111 1112259999998 88899999
Q ss_pred HHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHH-----HHHHhcCCCCCCcceEEEccchhccCCCcHH
Q 007085 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-----DLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 192 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~-----~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~ 264 (618)
++.+++. .+++....+...............+++|+|++.+. ..... +...++++||+||+|.+.+. ..
T Consensus 76 E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~--l~~~~~~~vIvDEaH~~k~~--~s 151 (299)
T PF00176_consen 76 EIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED--LKQIKWDRVIVDEAHRLKNK--DS 151 (299)
T ss_dssp HHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH--HHTSEEEEEEETTGGGGTTT--TS
T ss_pred hhccccccccccccccccccccccccccccccceeeeccccccccccccccccc--cccccceeEEEecccccccc--cc
Confidence 9999984 34444433333122222222345899999999998 21111 11245999999999998553 33
Q ss_pred HHHHHHHHCCCCCcEEEEEeeCch
Q 007085 265 DVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 265 ~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.....+..+. ...++++||||..
T Consensus 152 ~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 152 KRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccccc-cceEEeecccccc
Confidence 4444555565 6778899999853
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.29 E-value=3.2e-11 Score=102.76 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=80.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (618)
++-.+|-..+|+|||.-.+.-++...++ .+.++|||.||+.++..+.+.++.. .+.. .......
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~-~t~~~~~--- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRF-HTNARMR--- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEE-ESTTSS----
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----Cccc-Cceeeec---
Confidence 3446888999999998766655554433 2678999999999999999988753 2221 1111101
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC--CCCCcEEEEEeeCchHH
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l--~~~~~~l~lSAT~~~~~ 290 (618)
....+.-|-|.|+..+.+.+.+ .....++++||+||+|...... -...-.+..+ .....+|+||||||-..
T Consensus 68 -~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 -THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred -cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 1234457889999999887766 5557899999999999642211 1111112211 13468999999998643
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.29 E-value=9.4e-10 Score=125.51 Aligned_cols=284 Identities=17% Similarity=0.202 Sum_probs=161.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 216 (618)
+..+|+.-+|||||++.+..+ ..+.+. ...++++||+-++.|-.|..+++..+........ ...+...-.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHH
Confidence 358999999999999765443 233331 3478999999999999999999998754333322 4445555555
Q ss_pred HhhcC-CCEEEEChHHHHHHHHhcC--CCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHH
Q 007085 217 ALDYG-VDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 217 ~~~~~-~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
.+... -.|||||.+.|...+.... ..-.+-=+||+|||||-- ++.....+-..+ ++...++||.||.-.-...
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcccccccc
Confidence 66644 4899999999987776541 112223378999999852 334434444444 4588999999995321111
Q ss_pred -HHHhcCCCcEEEeccC-CcccccCCeEEEEEe--------------------------------------------ccC
Q 007085 294 -TNKYLKNPLTVDLVGD-SDQKLADGISLYSIA--------------------------------------------TSM 327 (618)
Q Consensus 294 -~~~~l~~~~~i~~~~~-~~~~~~~~~~~~~~~--------------------------------------------~~~ 327 (618)
....+.+....-.+.+ ...... +..++.. ...
T Consensus 421 tt~~~fg~ylh~Y~i~daI~Dg~v--l~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 421 TTKDVFGDYLHTYTITDAIRDGAV--LPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred chhhhhcceeEEEecchhhccCce--eeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 1111111111110000 000000 0000000 000
Q ss_pred CcchHHHHHHHH---H-hhcCCcEEEEecchhHHHHHHHHHHhcC--------C----------------eeeecCcCCH
Q 007085 328 YEKPSIIGQLIT---E-HAKGGKCIVFTQTKRDADRLAHAMAKSY--------N----------------CEPLHGDISQ 379 (618)
Q Consensus 328 ~~~~~~l~~~l~---~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~--------~----------------~~~lhg~~~~ 379 (618)
.........+.. . .....++.++|.+++.+..+++...... . ....|.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 000011111111 1 2235688888888885555554432210 0 0000111 12
Q ss_pred HHHHHHHHHH--hcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC
Q 007085 380 SQRERTLSAF--RDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 380 ~~r~~i~~~f--~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
..++.....| .+...++||.++++-+|.|.|.++++. +|-|.---.++|.+-|+.|.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 2333444443 456799999999999999999887765 56677677789999999995
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=3.4e-10 Score=113.92 Aligned_cols=340 Identities=20% Similarity=0.274 Sum_probs=211.5
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEE-ccCCChh--HHHHHHHHHHHHHHHhhh--------cC--------------CCC
Q 007085 118 GISKLFPIQKAVLEPAMQGRDMIGR-ARTGTGK--TLAFGIPILDKIIKFNEK--------HG--------------RGR 172 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~-~~tGsGK--T~~~l~~~l~~l~~~~~~--------~~--------------~~~ 172 (618)
.-..+|+.|.+.+..+.+-+|++.. ...+.|+ +-+|++.+++++++.... .. .-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 4467999999999999988887543 3334555 456888899998763321 00 013
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCce-----------EEEEcC----------------------Cch--------
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDT-----------ICVYGG----------------------TPI-------- 211 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~-----------~~~~~~----------------------~~~-------- 211 (618)
.|+||||||+++.|..+.+.+..++.+..- .--+++ +..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 589999999999999999988876432211 001111 100
Q ss_pred -HHHHHHhh--cCCCEEEEChHHHHHHHHhc------CCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC---C----
Q 007085 212 -SHQMRALD--YGVDAVVGTPGRVIDLIKRN------ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP---Q---- 275 (618)
Q Consensus 212 -~~~~~~~~--~~~~Ilv~T~~~l~~~l~~~------~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~---~---- 275 (618)
....+... ...|||||+|=-|...+... ...+..+.++|||-+|.++...| +.+..++..+. .
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccC
Confidence 00011111 25899999999988777632 22467788999999998865433 34445555542 1
Q ss_pred -----------------CCcEEEEEeeCchHHHHHHHHhcCCCcEEE----ecc-----CCcccccCCeEEEEEeccCCc
Q 007085 276 -----------------NRQSMMFSATMPPWIRSLTNKYLKNPLTVD----LVG-----DSDQKLADGISLYSIATSMYE 329 (618)
Q Consensus 276 -----------------~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~----~~~-----~~~~~~~~~~~~~~~~~~~~~ 329 (618)
-+|++++|+--.+....+...++.+..-.. +.. .....+...+..+........
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 137788888888877777777665432110 000 011111111111111111111
Q ss_pred chHHHHHHHHHhhc------CCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc
Q 007085 330 KPSIIGQLITEHAK------GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (618)
Q Consensus 330 ~~~~l~~~l~~~~~------~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~ 402 (618)
-.......+..+.+ ...+|||.|+--.-.++..++++. +....+|.=.++..-.++-+.|..|...||+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 11222222222221 235799999999999999999765 55555665555566667788899999999999975
Q ss_pred c--ccCCCCCCccEEEEcCCCCChhHHH---HHhccCCCCC----CcceEEEEechhhHHHHHHH
Q 007085 403 A--ARGLDVPNVDLIIHYELPNTSETFV---HRTGRTGRAG----KKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 403 ~--~~GlDi~~~~~VI~~~~p~~~~~~~---Qr~GR~gR~g----~~g~~~~~~~~~~~~~~~~l 458 (618)
+ -+-.+|..|..||+|.+|.++.-|. -+.+|+.-.| ..-.|.++++.-|...++.+
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 4 3457899999999999999998775 4555543222 34578899998887666554
No 167
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.20 E-value=1.7e-09 Score=113.01 Aligned_cols=109 Identities=18% Similarity=0.295 Sum_probs=91.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHhc-CCe------------------eeecCcCCHHHHHHHHHHHhcCC---ccEEEEcC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAKS-YNC------------------EPLHGDISQSQRERTLSAFRDGR---FNILIATD 401 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~------------------~~lhg~~~~~~r~~i~~~f~~g~---~~vLVaT~ 401 (618)
+.++|||.......+.+.+.|.+. ++| .-+.|..+..+|++.+++|++.- -.++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568999999999999999988652 222 24567788899999999998632 35788999
Q ss_pred ccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 402 ~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
+..-|||+-.++-+|+||+-|++..-.|.+-|+.|.|++..|+++..--|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999999999999999999999999999999999999999988654443
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.14 E-value=8.6e-10 Score=109.50 Aligned_cols=74 Identities=26% Similarity=0.253 Sum_probs=57.7
Q ss_pred CCChHHHHHHHH----HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~----~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..++|.|.+.+. .+..+.++++.+|||+|||++++.|++..+....... ...+++|+++|..+..|...++++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHHh
Confidence 457999999554 5556788999999999999999999988765422110 134799999999999998888776
Q ss_pred h
Q 007085 196 S 196 (618)
Q Consensus 196 ~ 196 (618)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.14 E-value=8.6e-10 Score=109.50 Aligned_cols=74 Identities=26% Similarity=0.253 Sum_probs=57.7
Q ss_pred CCChHHHHHHHH----HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~----~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..++|.|.+.+. .+..+.++++.+|||+|||++++.|++..+....... ...+++|+++|..+..|...++++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHHh
Confidence 457999999554 5556788999999999999999999988765422110 134799999999999998888776
Q ss_pred h
Q 007085 196 S 196 (618)
Q Consensus 196 ~ 196 (618)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.09 E-value=2.5e-09 Score=115.92 Aligned_cols=317 Identities=19% Similarity=0.235 Sum_probs=182.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC--
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS-- 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~-- 199 (618)
++|+-.+.+-.+.-...-+..+.||-|||+++.+|+.-..+. +..+.+++...-||.--++++..++..
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 455555666666666678999999999999999988655443 566888888899998888887776654
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCcceEEEccchhccCC------------
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV------------ 260 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~~~------------ 260 (618)
+.+.+...+.....+.. ...|||..+|...| ++++... ......+.+.|+||++.++=.
T Consensus 150 lsvG~~~~~m~~~ek~~--aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRA--AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHH--HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 44444455554443333 44589999999887 4443221 122456889999999976311
Q ss_pred ----CcHHHHHHHHHHCCCCC--------cEEEEEeeCchHHHH----------------------HHH--HhcCCCcEE
Q 007085 261 ----GFAEDVEVILERLPQNR--------QSMMFSATMPPWIRS----------------------LTN--KYLKNPLTV 304 (618)
Q Consensus 261 ----~~~~~~~~il~~l~~~~--------~~l~lSAT~~~~~~~----------------------~~~--~~l~~~~~i 304 (618)
.....+..++..+.... +.|.+|-.=....+. +.. .+..+...+
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 12344444444442211 112221110000000 000 001110000
Q ss_pred ------EeccCC------------------------------------------------------------cccccCCe
Q 007085 305 ------DLVGDS------------------------------------------------------------DQKLADGI 318 (618)
Q Consensus 305 ------~~~~~~------------------------------------------------------------~~~~~~~~ 318 (618)
-++... +.......
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 000000 00000000
Q ss_pred EEEEEe---------------ccCCcch-HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHH
Q 007085 319 SLYSIA---------------TSMYEKP-SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQ 381 (618)
Q Consensus 319 ~~~~~~---------------~~~~~~~-~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~ 381 (618)
....++ .....|. ..+.++...+.+++|+||-+.+++..+.+.+.|.+ .++..++.......+
T Consensus 388 ~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E 467 (822)
T COG0653 388 DVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE 467 (822)
T ss_pred ceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH
Confidence 111111 1112232 34455666677899999999999999999999975 477777777755444
Q ss_pred HHHHHHHHhcCCccEEEEcCccccCCCCCCcc-----------EEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVD-----------LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 382 r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~-----------~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
-+.+...-+. -.|-|||+++++|-||.--. +||--.-..+-.--.|..||+||.|-+|..-.+++-.
T Consensus 468 A~Iia~AG~~--gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 468 AEIIAQAGQP--GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHHhhcCCC--CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 3333332222 35789999999999985433 2443333334444469999999999888877776654
Q ss_pred h
Q 007085 451 Q 451 (618)
Q Consensus 451 ~ 451 (618)
+
T Consensus 546 D 546 (822)
T COG0653 546 D 546 (822)
T ss_pred H
Confidence 4
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.81 E-value=4.8e-08 Score=94.27 Aligned_cols=127 Identities=21% Similarity=0.247 Sum_probs=90.0
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
-..|++.|.-++-.+..+ .|++..||-|||+++.+|++-..+. +..|-|++.+..||..-++++..++.
T Consensus 75 g~~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp S----HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 344888888888777654 4999999999999988887666544 77899999999999998888877664
Q ss_pred --CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHH-HHHHhcC------CCCCCcceEEEccchhcc
Q 007085 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (618)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~~------~~~~~~~~vViDEaH~~~ 258 (618)
++.+.+++...+...+.... .++|+++|...+. +++.... .....+.++||||+|.++
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 46667777777655444433 3689999999984 4444321 124678999999999764
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.65 E-value=1.9e-07 Score=103.94 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=85.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH-----HhC----CCC--ceEEE
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH-----ESA----PSL--DTICV 205 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~-----~~~----~~~--~~~~~ 205 (618)
.++.+.++||+|||.+|+-.|+..... ....++||+||+.+..+.+...+. .+| ... ...++
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~ 132 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVI 132 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEE
Confidence 368999999999999998888766543 124579999999998888776544 222 222 22222
Q ss_pred EcCC-------c-hHHHHHHhh------cCCCEEEEChHHHHHHHH-hcC----------CCCCCc----ceEEEccchh
Q 007085 206 YGGT-------P-ISHQMRALD------YGVDAVVGTPGRVIDLIK-RNA----------LNLSEV----QFVVLDEADQ 256 (618)
Q Consensus 206 ~~~~-------~-~~~~~~~~~------~~~~Ilv~T~~~l~~~l~-~~~----------~~~~~~----~~vViDEaH~ 256 (618)
.+.. . ...-..... +.+.|+|+|.++|..... +.. ..+..+ -+||+||.|+
T Consensus 133 ~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~ 212 (986)
T PRK15483 133 NAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR 212 (986)
T ss_pred ecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC
Confidence 2221 0 111111111 147999999999965321 100 111111 2799999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
+... ...+..| ..+.+.+ +|.+|||.+.
T Consensus 213 ~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 213 FPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 8542 2344444 5555444 5669999986
No 173
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.63 E-value=8.9e-08 Score=104.13 Aligned_cols=101 Identities=12% Similarity=0.179 Sum_probs=86.8
Q ss_pred cEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCC-cc-EEEEcCccccCCCCCCccEEEEcCCCC
Q 007085 346 KCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR-FN-ILIATDVAARGLDVPNVDLIIHYELPN 422 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~-~~-vLVaT~~~~~GlDi~~~~~VI~~~~p~ 422 (618)
+++||++...-+..+...|.. .+....+.+.|+...|.+.+..|..+. .. .+++..+...|+++..+.+|+..|+.|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 899999999999988887754 366677789999999999999998543 23 366888999999999999999999999
Q ss_pred ChhHHHHHhccCCCCCCcceEEEE
Q 007085 423 TSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 423 ~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
++....|.+-|++|.|+...+.+.
T Consensus 621 np~~eeQaidR~hrigq~k~v~v~ 644 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKVS 644 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeeee
Confidence 999999999999999987776653
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.56 E-value=2e-07 Score=86.34 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=74.9
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH----HHHH
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE----KEFH 194 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~----~~l~ 194 (618)
+...++.|+.++++++...-+++.+|.|||||+.++..+++.+.+ +.-.+++|+-|..+..+.+- +.-.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHH
Confidence 345789999999999977789999999999999998888888765 23457888888764321110 0000
Q ss_pred HhCCCCceEE-EEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC
Q 007085 195 ESAPSLDTIC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
++.|.+.... ...........+.+.....|-+.++..+.- ..+. -.+||||||+.+ -..++..++.++
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG------rt~~-~~~iIvDEaQN~----t~~~~k~ilTR~ 143 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG------RTFD-NAFIIVDEAQNL----TPEELKMILTRI 143 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--------B--SEEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC------cccc-ceEEEEecccCC----CHHHHHHHHccc
Confidence 0101000000 000000001111122233455554332211 1122 379999999987 578899999999
Q ss_pred CCCCcEEEEEee
Q 007085 274 PQNRQSMMFSAT 285 (618)
Q Consensus 274 ~~~~~~l~lSAT 285 (618)
..+.+++++-=.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 888888776443
No 175
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.55 E-value=4.8e-07 Score=96.89 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHH
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~ 164 (618)
.-+.+.+-++.++.++.+.+.++...|+|+||.+..+.+++.+.+.
T Consensus 404 cgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~e 449 (1282)
T KOG0921|consen 404 CGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANE 449 (1282)
T ss_pred ccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHh
Confidence 3456788889999999999999999999999998888888887763
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.54 E-value=3.6e-06 Score=90.42 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=42.2
Q ss_pred CCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCC
Q 007085 392 GRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 392 g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
...+.|.+-.++-+|.|-|+|-.++-+....|...=+|.+||..|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3478899999999999999999999999999999999999999994
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.54 E-value=4.4e-07 Score=84.91 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHhCCC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 121 KLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
+|++-|++++..++... -++|+++.|+|||.+ +..+...+.. .+.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHhhC----
Confidence 37899999999997543 378899999999974 3444444433 25689999999888887666532
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC----CCCCcceEEEccchhccCCCcHHHHHHHHHHCC
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL----NLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~----~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
+ -..|...++........ .+...++|||||+-.+ -...+..++..++
T Consensus 68 -~------------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~ 118 (196)
T PF13604_consen 68 -I------------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAK 118 (196)
T ss_dssp -S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-
T ss_pred -c------------------------chhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHH
Confidence 1 12232222221111111 1556789999999987 4577888888887
Q ss_pred C-CCcEEEEE
Q 007085 275 Q-NRQSMMFS 283 (618)
Q Consensus 275 ~-~~~~l~lS 283 (618)
. ..++|++-
T Consensus 119 ~~~~klilvG 128 (196)
T PF13604_consen 119 KSGAKLILVG 128 (196)
T ss_dssp T-T-EEEEEE
T ss_pred hcCCEEEEEC
Confidence 6 55555544
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.53 E-value=1.2e-06 Score=84.67 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=108.1
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC----------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007085 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~ 172 (618)
.+.+++++++. -.|...|.+++-.+.+ ....++-..||.||--+..-.|++..++ +
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------G- 90 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------G- 90 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------C-
Confidence 44566665532 2378889888865542 2348889999999998766566666554 1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC-CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC---CCC-----
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNL----- 243 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~~----- 243 (618)
..++|++..+..|.....+.++.+... +.+..+.. .... ........||++|+..|........ ..+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCCcccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 346999999999999999999887532 22222211 1101 1112245799999999976643211 111
Q ss_pred ---CCc-ceEEEccchhccCCCc--------HHHHHHHHHHCCCCCcEEEEEeeCchHHHH
Q 007085 244 ---SEV-QFVVLDEADQMLSVGF--------AEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (618)
Q Consensus 244 ---~~~-~~vViDEaH~~~~~~~--------~~~~~~il~~l~~~~~~l~lSAT~~~~~~~ 292 (618)
.++ .+||+||||...+... ...+..+-+.+ ++.++|.+|||...+.++
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRN 226 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCce
Confidence 222 4899999999876532 12344455556 466799999998764443
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.44 E-value=1.4e-06 Score=84.47 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
+|.+.|.+|+..++.... .+|++|+|+|||.+.. .++..+...........+.++|+++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 9999999999996443 3444432100000113467899999999999999999988
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.41 E-value=8.9e-06 Score=90.83 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=54.9
Q ss_pred CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 221 ~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
...|+++||..|...+....+.+.++..|||||||++....-..-+.+++..-.+..-+.+|||.|.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3579999999999989888999999999999999998776666666666666666666777777764
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.40 E-value=3.5e-06 Score=87.78 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=63.7
Q ss_pred HHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHH
Q 007085 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (618)
Q Consensus 113 ~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 192 (618)
.+...+..+|..-|..|+.+++...-.||++|+|+|||.+... |+.++.+. ....+||++|+...+.|+++.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~-------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh-------cCCceEEEcccchhHHHHHHH
Confidence 3334566778899999999999998899999999999987643 44444442 256799999999999999999
Q ss_pred HHHhCCCCceEE
Q 007085 193 FHESAPSLDTIC 204 (618)
Q Consensus 193 l~~~~~~~~~~~ 204 (618)
+.+.. ++++-
T Consensus 474 Ih~tg--LKVvR 483 (935)
T KOG1802|consen 474 IHKTG--LKVVR 483 (935)
T ss_pred HHhcC--ceEee
Confidence 98753 54443
No 182
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.36 E-value=1.5e-07 Score=102.55 Aligned_cols=244 Identities=18% Similarity=0.236 Sum_probs=140.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC--CCCceEEEEcCCchHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISH 213 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~~~~~~~~~~~~ 213 (618)
..+.++-+|||+|||++|.++++..+.. .+..++++++|-++|+..-.+.+.+.. +.++++-+.+....+
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd- 1014 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD- 1014 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC-
Confidence 3568899999999999999988877644 335789999999999988777776544 345555556555543
Q ss_pred HHHHhhcCCCEEEEChHHHHHHHHh--cCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-------CCCCcEEEEEe
Q 007085 214 QMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-------PQNRQSMMFSA 284 (618)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~--~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-------~~~~~~l~lSA 284 (618)
... -...+++|+||++....... ..-.+++++++|+||.|++.+. ..+.++.+.... ++..+.+.+|-
T Consensus 1015 -~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~~vr~~glst 1091 (1230)
T KOG0952|consen 1015 -VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEEPVRYLGLST 1091 (1230)
T ss_pred -hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccCcchhhhhHhh
Confidence 111 23479999999999876663 3345889999999999987554 333333332222 22334444443
Q ss_pred eCchHHHHHHHHhcCCCcEEEeccCCccccc-----CCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHH
Q 007085 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-----DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359 (618)
Q Consensus 285 T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 359 (618)
-+.+ . ..+..++.-....... .....+. +.+.-......+..+.....+.++.+.+..+++||+.+++....
T Consensus 1092 a~~n-a-~dla~wl~~~~~~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrl 1168 (1230)
T KOG0952|consen 1092 ALAN-A-NDLADWLNIKDMYNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRL 1168 (1230)
T ss_pred hhhc-c-HHHHHHhCCCCcCCCC-cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeeccccccc
Confidence 3322 1 2223333222221110 0001111 11111111122222333455667777788999999998876554
Q ss_pred HHHHHH----hc-CCeeeecCcCCHHHHHHHHHHHhcCCcc
Q 007085 360 LAHAMA----KS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 360 l~~~L~----~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
-+..|. .. -+...++ |+..+-+.++...++...+
T Consensus 1169 ta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1169 TALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred chHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccchh
Confidence 444332 11 2233343 3355666677766665544
No 183
>PRK10536 hypothetical protein; Provisional
Probab=98.29 E-value=2.1e-05 Score=75.01 Aligned_cols=143 Identities=18% Similarity=0.172 Sum_probs=82.2
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH-------
Q 007085 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV------- 189 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~------- 189 (618)
..+...+..|...+.++.+...+++.+++|+|||+.++..+++.+.. ..-.+++|.-|+.+..+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 45566788999999999988889999999999999887777666543 1123456665654321110
Q ss_pred HHHHHHhC----CCCceEEEEcCCchHHHHHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHH
Q 007085 190 EKEFHESA----PSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 190 ~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~ 264 (618)
.+.+.-++ ..+.. +.+. ......+. ..-.|-|.....+ +- ..+ +-++||||||+.+ -..
T Consensus 128 ~eK~~p~~~pi~D~L~~--~~~~---~~~~~~~~~~~~~Iei~~l~ym----RG--rtl-~~~~vIvDEaqn~----~~~ 191 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR--RLGA---SFMQYCLRPEIGKVEIAPFAYM----RG--RTF-ENAVVILDEAQNV----TAA 191 (262)
T ss_pred HHHHHHHHHHHHHHHHH--HhCh---HHHHHHHHhccCcEEEecHHHh----cC--Ccc-cCCEEEEechhcC----CHH
Confidence 01111000 00000 0010 11111111 1234555543322 21 122 3378999999987 457
Q ss_pred HHHHHHHHCCCCCcEEEE
Q 007085 265 DVEVILERLPQNRQSMMF 282 (618)
Q Consensus 265 ~~~~il~~l~~~~~~l~l 282 (618)
++..++.++..+.++|++
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 888899999888877664
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.21 E-value=0.00023 Score=78.67 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|.+.|.+|+..++.. ..++|++|+|+|||.+..-.+...+.. +.++|+++||..-+.++.+.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 35789999999998876 568999999999997654443333322 568999999999999999988763
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.17 E-value=1.7e-05 Score=74.11 Aligned_cols=126 Identities=16% Similarity=0.286 Sum_probs=81.6
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC---CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~---~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
+|+....|..++=.+. .++. +++.|.++...+.+ +.|.+.+.-||.|||.+ ++|++..++.. ....+
T Consensus 4 ~w~p~~~P~wLl~E~e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd-------g~~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD-------GSRLV 73 (229)
T ss_pred CCCchhChHHHHHHHH-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC-------CCcEE
Confidence 4556666666654443 3333 89999999998886 47899999999999975 57888777652 23467
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCCC---ceEEEE--cCCch--H--H-H---HHHhhcCCCEEEEChHHHHHHH
Q 007085 177 LVLAPTRELAKQVEKEFHESAPSL---DTICVY--GGTPI--S--H-Q---MRALDYGVDAVVGTPGRVIDLI 236 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~~~---~~~~~~--~~~~~--~--~-~---~~~~~~~~~Ilv~T~~~l~~~l 236 (618)
.+++| ++|..|.++.+...+..+ .+..+. -.... . . . .+.....-.|+++||+.++++.
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 78888 589999998887755322 111111 11111 1 1 1 1112234679999999987543
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.17 E-value=9.3e-06 Score=84.42 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
..+.+-|+.|+......++ .+|++|+|+|||.+....+.+.+.+ +.++||++||.+-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 4577899999999888865 7899999999999776666666544 6789999999999999988643
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.16 E-value=3.4e-05 Score=84.06 Aligned_cols=142 Identities=19% Similarity=0.219 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~ 201 (618)
..++|+.|+...+..+-++|.+++|+|||.+. ..++..+.+.. ......+++++||-.-|....+.+......+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 35899999999999888999999999999754 33444443311 11235789999999988888887765432221
Q ss_pred eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHH------hcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCC
Q 007085 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~------~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
. . . ........-..|..+|+.... ........+++|||||+-++ -...+..+++.+++
T Consensus 228 ~-------~-~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~ 291 (615)
T PRK10875 228 L-------T-D----EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPP 291 (615)
T ss_pred c-------c-h----hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhccc
Confidence 1 0 0 000111112334444432211 11112345689999999976 35777888999999
Q ss_pred CCcEEEEEe
Q 007085 276 NRQSMMFSA 284 (618)
Q Consensus 276 ~~~~l~lSA 284 (618)
..++|++-=
T Consensus 292 ~~rlIlvGD 300 (615)
T PRK10875 292 HARVIFLGD 300 (615)
T ss_pred CCEEEEecc
Confidence 888887643
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.14 E-value=9.9e-06 Score=83.45 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=67.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
-++|.+..|||||++++-.+ ..+.. ...+..+++++++..|...+.+.+.+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~-~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLA-KELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYN------------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHHH-HHhhc------cccCCceEEEEecchHHHHHHHHHhhhcc-------------------
Confidence 47899999999998664333 33311 12366799999999999988888876430
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-------cHHHHHHHHHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-------FAEDVEVILER 272 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-------~~~~~~~il~~ 272 (618)
.......+..+..+...+.........+++|||||||++.... ...++..++..
T Consensus 57 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001222334444433332222346789999999999987621 23455555555
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.09 E-value=5e-05 Score=82.64 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceE
Q 007085 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~ 203 (618)
++|+.|+..++..+-++|.++.|+|||.+. ..++..+.+.... ....++++++||-.-+..+.+.+......+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 799999999999989999999999999754 3444444332111 012579999999888888777776543222110
Q ss_pred EEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHH------hcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~------~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
. .......+-..|..+|+.... ........+++|||||+-++ -...+..+++.+++..
T Consensus 224 --------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNT 287 (586)
T ss_pred --------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCC
Confidence 0 001111222445444432211 11122346899999999976 3567788899999888
Q ss_pred cEEEEE
Q 007085 278 QSMMFS 283 (618)
Q Consensus 278 ~~l~lS 283 (618)
++|++-
T Consensus 288 rlIlvG 293 (586)
T TIGR01447 288 KLILLG 293 (586)
T ss_pred EEEEEC
Confidence 887764
No 190
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.09 E-value=1.5e-05 Score=72.60 Aligned_cols=104 Identities=20% Similarity=0.348 Sum_probs=70.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHhcC---CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC--ccccCCCCCC--ccEEE
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAKSY---NCEPLHGDISQSQRERTLSAFRDGRFNILIATD--VAARGLDVPN--VDLII 416 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~--~~~~GlDi~~--~~~VI 416 (618)
++.+|||+++.+..+.+.+.+.+.. ...++.. ...++.++++.|++++..||+++. .+.+|||+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 4799999999999999999986542 2223333 356788999999999999999998 9999999997 77899
Q ss_pred EcCCCC-Chh-----------------------------HHHHHhccCCCCCCcceEEEEech
Q 007085 417 HYELPN-TSE-----------------------------TFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 417 ~~~~p~-~~~-----------------------------~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
+...|. ++. ...|.+||+-|..++--++++++.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 988875 111 124899999998665344444443
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.07 E-value=4.4e-05 Score=85.53 Aligned_cols=130 Identities=22% Similarity=0.219 Sum_probs=82.0
Q ss_pred HHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
+....-..+++.|++|+..+...+-++|.++.|+|||.+. ..++..+... +....+++++||-..|..+.+..
T Consensus 316 ~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~~ 388 (720)
T TIGR01448 316 VEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGEVT 388 (720)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHHhc
Confidence 3333345699999999999998888999999999999743 4444443321 11156888999987776544332
Q ss_pred HHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-----cCCCCCCcceEEEccchhccCCCcHHHHHH
Q 007085 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-----NALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (618)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-----~~~~~~~~~~vViDEaH~~~~~~~~~~~~~ 268 (618)
. .. ..|..+++..... ..-.....++|||||++++. ...+..
T Consensus 389 g-----~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~ 435 (720)
T TIGR01448 389 G-----LT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALS 435 (720)
T ss_pred C-----Cc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHH
Confidence 1 00 0121222111000 00112457899999999873 456778
Q ss_pred HHHHCCCCCcEEEEE
Q 007085 269 ILERLPQNRQSMMFS 283 (618)
Q Consensus 269 il~~l~~~~~~l~lS 283 (618)
++..++...++|++-
T Consensus 436 Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 436 LLAALPDHARLLLVG 450 (720)
T ss_pred HHHhCCCCCEEEEEC
Confidence 888888888887764
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.97 E-value=4.4e-05 Score=82.69 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=90.2
Q ss_pred CCCChHHHHHHHHHHhC----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhh---------c-------C---------
Q 007085 119 ISKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---------H-------G--------- 169 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~---------~-------~--------- 169 (618)
+++|++.|...+..++. ..+.++..|||+|||++.|-..|......... . +
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~ 98 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSE 98 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchh
Confidence 45689999887766654 57899999999999997766666555432210 0 0
Q ss_pred --C------CCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCc----h--------------------------
Q 007085 170 --R------GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP----I-------------------------- 211 (618)
Q Consensus 170 --~------~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~----~-------------------------- 211 (618)
. ...+++.+-.-|-....|+.+++++.....+.+++-.-.. .
T Consensus 99 e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 99 EAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred hhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 1146677777888889999999987654443333211000 0
Q ss_pred -----------------H-----------------HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCC-CcceEEEccchh
Q 007085 212 -----------------S-----------------HQMRALDYGVDAVVGTPGRVIDLIKRNALNLS-EVQFVVLDEADQ 256 (618)
Q Consensus 212 -----------------~-----------------~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~-~~~~vViDEaH~ 256 (618)
. ...+.+...++||+|-+..|++-..+....++ .=.+||+||||.
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHN 258 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHN 258 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEecccc
Confidence 0 00122334689999999999887766553221 235899999998
Q ss_pred cc
Q 007085 257 ML 258 (618)
Q Consensus 257 ~~ 258 (618)
+.
T Consensus 259 iE 260 (945)
T KOG1132|consen 259 IE 260 (945)
T ss_pred HH
Confidence 73
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.83 E-value=0.00031 Score=80.20 Aligned_cols=122 Identities=17% Similarity=0.066 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..|++-|++|+..++...+ ++|++..|+|||.+ +-++...+.. .+.+++.++||-..+....+..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L~e~t----- 410 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENLEGGS----- 410 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHHhhcc-----
Confidence 3599999999999998654 78999999999974 3344433322 2678999999976654443210
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCC
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~ 277 (618)
.+ --.|..+|+.-.......+...++|||||+-.+. ...+..++... +...
T Consensus 411 Gi------------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~ga 462 (988)
T PRK13889 411 GI------------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGA 462 (988)
T ss_pred Cc------------------------chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCC
Confidence 00 0112233322112222345677899999999763 44566666644 4566
Q ss_pred cEEEEE
Q 007085 278 QSMMFS 283 (618)
Q Consensus 278 ~~l~lS 283 (618)
++|++-
T Consensus 463 rvVLVG 468 (988)
T PRK13889 463 KVVLVG 468 (988)
T ss_pred EEEEEC
Confidence 776654
No 194
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.80 E-value=0.00037 Score=67.00 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCC
Q 007085 108 QDIVAALARRGISKLFPIQKAVLEPAMQG 136 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~ 136 (618)
-.|++.|+...|.-+..-|...-.+++++
T Consensus 6 ~~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 6 LYLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 35666666666665555555555555543
No 195
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00035 Score=72.64 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=75.0
Q ss_pred EEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC---CceEEEEcCCchHH----
Q 007085 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS---LDTICVYGGTPISH---- 213 (618)
Q Consensus 141 i~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~---~~~~~~~~~~~~~~---- 213 (618)
..+.||||||++..-.|+.+..+. -...|+.|......+.....+..-... ..-.+.+++.....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 467899999998777777776541 124777777666655554443211000 00011111111110
Q ss_pred HHHHhhcCCCEEEEChHHHHHHHHhcC---CC---CCCcc-eEEEccchhccCCC---------cHHHHHHHHH-HC--C
Q 007085 214 QMRALDYGVDAVVGTPGRVIDLIKRNA---LN---LSEVQ-FVVLDEADQMLSVG---------FAEDVEVILE-RL--P 274 (618)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~---~~~~~-~vViDEaH~~~~~~---------~~~~~~~il~-~l--~ 274 (618)
........+.|+++|.+.|...+.+.. .. +.+.. +.+-||+|++.... ....|+..+. .+ .
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 001134568899999999987775432 22 33444 45669999985321 1122222221 12 2
Q ss_pred CCCcEEEEEeeCch
Q 007085 275 QNRQSMMFSATMPP 288 (618)
Q Consensus 275 ~~~~~l~lSAT~~~ 288 (618)
++.-++.+|||.|+
T Consensus 154 kd~~~lef~at~~k 167 (812)
T COG3421 154 KDNLLLEFSATIPK 167 (812)
T ss_pred CCceeehhhhcCCc
Confidence 34456778999984
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.79 E-value=0.0001 Score=72.50 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=87.2
Q ss_pred cCCCCChHHHHHHHHHHhCCCC--EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH----
Q 007085 117 RGISKLFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---- 190 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~---- 190 (618)
.++......|.-|++.++...- +.+.++.|||||+.++.+.+...+... .-.+++|.-|+..+-+.+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~------~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK------RYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh------hhceEEEecCCcCcccccCcCCC
Confidence 4666667789999999998643 788999999999999888888876522 2346788778765543220
Q ss_pred HHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCC----------cceEEEccchhccCC
Q 007085 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE----------VQFVVLDEADQMLSV 260 (618)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~----------~~~vViDEaH~~~~~ 260 (618)
.+=.|+.|.+. +..+..+.+.. .-=++.+.|...+.+..+.+.. -.+||||||+.+
T Consensus 298 ~eEeKm~PWmq--------~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL--- 363 (436)
T COG1875 298 TEEEKMGPWMQ--------AIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL--- 363 (436)
T ss_pred chhhhccchHH--------HHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---
Confidence 00001111000 00011111111 1112233444444433332211 258999999998
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEE
Q 007085 261 GFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 261 ~~~~~~~~il~~l~~~~~~l~lS 283 (618)
-..+++.++.+.....++|++.
T Consensus 364 -TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 -TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred -CHHHHHHHHHhccCCCEEEEcC
Confidence 5788999999998888877753
No 197
>PF13245 AAA_19: Part of AAA domain
Probab=97.77 E-value=0.00014 Score=56.18 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=41.0
Q ss_pred HHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 129 VLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 129 ~i~~i~~-~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
++...+. ..-++|.+++|||||.+.+-.+...+..+ ... +..+++++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443333 34466699999999976655555444221 112 557999999999999998888
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.75 E-value=0.00053 Score=77.27 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..|++-|++|+..++.. +-++|+++.|+|||.+. -+++..+.. .+..+++++||-..+..+.+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~~~~----- 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGLQAES----- 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHHHhcc-----
Confidence 45899999999999874 56899999999999743 334333322 2678999999976665443221
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCC
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~ 277 (618)
.+. -.|..+++..+......+...++|||||+-.+. ...+..++... ....
T Consensus 417 g~~------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIE------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAEEAGA 468 (744)
T ss_pred CCc------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCC
Confidence 011 112223321122222335678999999999873 34455566533 3456
Q ss_pred cEEEEE
Q 007085 278 QSMMFS 283 (618)
Q Consensus 278 ~~l~lS 283 (618)
++|++-
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 666654
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.74 E-value=7.4e-05 Score=69.56 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=57.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc---HHHHHHHHHHHHHhCCCCceEEEEcCCchHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT---RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt---~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 214 (618)
-.++.+++|+|||..++-.+...... +.+++++-|. +....++... +. ...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---------g~~v~i~k~~~d~~~~~~~i~~~-------lg-------~~~--- 57 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---------GMKVLVFKPAIDDRYGEGKVVSR-------IG-------LSR--- 57 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---------CCeEEEEeccccccccCCcEecC-------CC-------Ccc---
Confidence 36889999999997655444333222 5678888663 1111111100 10 000
Q ss_pred HHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
..+.+.....+.+.+.. .-.++++|||||+|.+. .+++.++++.+.+.-..+++++-
T Consensus 58 -------~~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 58 -------EAIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -------cceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 00123444555555443 24578899999998752 34466676665444444444443
No 200
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.70 E-value=1.3e-06 Score=94.02 Aligned_cols=75 Identities=19% Similarity=0.400 Sum_probs=59.5
Q ss_pred HHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhc---CCccEEEEcCccccC
Q 007085 332 SIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD---GRFNILIATDVAARG 406 (618)
Q Consensus 332 ~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~---g~~~vLVaT~~~~~G 406 (618)
.+|...++.. ..+++|+||.......+.+.+++........+.|.....+|+..++.|+. .+...|++|.+.+.|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3344444433 35789999999999999999999766678889999999999999999984 456778899876654
No 201
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.62 E-value=0.0014 Score=75.59 Aligned_cols=136 Identities=19% Similarity=0.145 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
+++..++...... ..|++-|++++..+.. ++-++|++..|+|||.+ +-++...+.. .+.+++.++||-.
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTgk 436 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAGK 436 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcHH
Confidence 3444444433333 4599999999998864 45589999999999974 3444443322 2678999999976
Q ss_pred HHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHH
Q 007085 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 185 La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~ 264 (618)
-+....+.. .+. -.|...++.........+..-++|||||+..+ -..
T Consensus 437 AA~~L~e~~-----Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv----~~~ 483 (1102)
T PRK13826 437 AAEGLEKEA-----GIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV----ASR 483 (1102)
T ss_pred HHHHHHHhh-----CCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccC----CHH
Confidence 665543321 111 12222321111112234566779999999976 346
Q ss_pred HHHHHHHHCC-CCCcEEEEEe
Q 007085 265 DVEVILERLP-QNRQSMMFSA 284 (618)
Q Consensus 265 ~~~~il~~l~-~~~~~l~lSA 284 (618)
.+..++.... ...++|++-=
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD 504 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGD 504 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECC
Confidence 6667777764 4667776643
No 202
>PRK08181 transposase; Validated
Probab=97.61 E-value=0.001 Score=65.05 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=60.6
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCch
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~ 211 (618)
++..+.++++.+|+|+|||..+. ++...+.+ .+..++++ +..+|..+......+
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--------~g~~v~f~-~~~~L~~~l~~a~~~---------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAA-AIGLALIE--------NGWRVLFT-RTTDLVQKLQVARRE---------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHH-HHHHHHHH--------cCCceeee-eHHHHHHHHHHHHhC----------------
Confidence 44567889999999999997543 33333322 13445444 445565554322110
Q ss_pred HHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCCCCCcEEEEEeeCchH
Q 007085 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPW 289 (618)
Q Consensus 212 ~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~~ 289 (618)
.+.+.++.. +..+++|||||.+...... ....+..+++.......+|+.|-.++..
T Consensus 156 ---------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 156 ---------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred ---------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 122222221 4567899999999764332 2334555665544445566666555543
No 203
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.59 E-value=0.00018 Score=80.92 Aligned_cols=154 Identities=19% Similarity=0.132 Sum_probs=95.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHH---------HhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC-ceEEE
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIK---------FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-DTICV 205 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~---------~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~-~~~~~ 205 (618)
++.+++...+|+|||..-+...+...-+ ..+.........+|||||. ++..||++++.+..+.. ++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 4568999999999998665443332111 0111112234569999995 88899999999998766 44444
Q ss_pred EcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC--------------CC----C--CCcceEEEccchhccCCCcHHH
Q 007085 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--------------LN----L--SEVQFVVLDEADQMLSVGFAED 265 (618)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--------------~~----~--~~~~~vViDEaH~~~~~~~~~~ 265 (618)
.|-..........-..+|||+||++.|...+.... .. + -.|=-|++|||+.+-. ....
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~ 530 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSA 530 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHH
Confidence 44333222222222358999999999976553321 11 1 1122589999997644 3455
Q ss_pred HHHHHHHCCCCCcEEEEEeeCchHHHHH
Q 007085 266 VEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 266 ~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
..+.+.+++ ....-.+|.||...+..+
T Consensus 531 ~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 531 AAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 566666664 455678899986655544
No 204
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.58 E-value=0.00037 Score=76.43 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..|..-|++|+..++.-+| .||.+=+|+|||.+....+-..+.. +.++|+.+-|..-+.++.-.++...
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---------gkkVLLtsyThsAVDNILiKL~~~~- 737 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---------GKKVLLTSYTHSAVDNILIKLKGFG- 737 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---------CCeEEEEehhhHHHHHHHHHHhccC-
Confidence 4578899999998887765 8999999999998654433222222 7789999999888888888777642
Q ss_pred CCceEEE---------------EcCCch--HHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 199 SLDTICV---------------YGGTPI--SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 199 ~~~~~~~---------------~~~~~~--~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
+.+.-+ +...+. -...+..-+.+.||.||---+.+.+ +..+.|+++|||||-.+.
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 221111 111111 1111222245788888854444333 235679999999999774
No 205
>PRK06526 transposase; Provisional
Probab=97.52 E-value=0.00057 Score=66.46 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=61.0
Q ss_pred HHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcC
Q 007085 129 VLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208 (618)
Q Consensus 129 ~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~ 208 (618)
+.+.+....++++.+|+|+|||..+.......+ + .+.+++++.. ..++++ +.....
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~-~--------~g~~v~f~t~-~~l~~~----l~~~~~---------- 146 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-Q--------AGHRVLFATA-AQWVAR----LAAAHH---------- 146 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHHHHHHHHHH-H--------CCCchhhhhH-HHHHHH----HHHHHh----------
Confidence 334556678999999999999986643333322 2 1445555433 234333 322100
Q ss_pred CchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 209 ~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
. .+.. ..+.. +..+++|||||+|...... ....+..++........+|+.|..++
T Consensus 147 -----------~------~~~~---~~l~~----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 147 -----------A------GRLQ---AELVK----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred -----------c------CcHH---HHHHH----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 0 0111 11211 4567899999999764321 22345555544333456777777766
Q ss_pred hH
Q 007085 288 PW 289 (618)
Q Consensus 288 ~~ 289 (618)
..
T Consensus 203 ~~ 204 (254)
T PRK06526 203 GR 204 (254)
T ss_pred HH
Confidence 54
No 206
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.46 E-value=0.012 Score=72.93 Aligned_cols=238 Identities=14% Similarity=0.154 Sum_probs=127.9
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|++-|++++..++.. +-.+|+++.|+|||.+ +-.++..+ + ..+..+++++||-.-+..+.+......
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-~-------~~G~~V~~lAPTgrAA~~L~e~~g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-S-------EQGYEIQIITAGSLSAQELRQKIPRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-H-------hcCCeEEEEeCCHHHHHHHHHHhcchh
Confidence 35889999999999876 4589999999999973 34444333 2 136789999999877766655432110
Q ss_pred CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCC
Q 007085 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQN 276 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~ 276 (618)
.....+...+... .-..|...++ .....+..-++|||||+-++ -...+..++... +.+
T Consensus 499 -----------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl----~~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 -----------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKL----SNNELLKLIDKAEQHN 557 (1960)
T ss_pred -----------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCC----CHHHHHHHHHHHhhcC
Confidence 1111111111111 1122333332 12233557789999999977 356677777766 467
Q ss_pred CcEEEEEee--Cch----HHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch-HHHHHHHHHhhcCCcEEE
Q 007085 277 RQSMMFSAT--MPP----WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SIIGQLITEHAKGGKCIV 349 (618)
Q Consensus 277 ~~~l~lSAT--~~~----~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~lV 349 (618)
.++|++-=+ ++. .+..++... ....+.+...... ...+ .....+...+. .+...++.......+++|
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~--gv~t~~l~~i~rq--~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tli 631 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG--GVTTYAWVDTKQQ--KASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQV 631 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC--CCcEEEeeccccc--Ccce--eeeccCchHHHHHHHHHHHhcccccCceEE
Confidence 888877443 221 222233322 1222222111110 1111 11111111222 233333332333446899
Q ss_pred EecchhHHHHHHHHHHhcC-----------Ceeeec-CcCCHHHHHHHHHHHhcCCc
Q 007085 350 FTQTKRDADRLAHAMAKSY-----------NCEPLH-GDISQSQRERTLSAFRDGRF 394 (618)
Q Consensus 350 f~~~~~~~~~l~~~L~~~~-----------~~~~lh-g~~~~~~r~~i~~~f~~g~~ 394 (618)
+..+.++...|...++..+ .+..+. ..++..++.. ...|+.|..
T Consensus 632 v~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~Gdv 687 (1960)
T TIGR02760 632 LATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQGMV 687 (1960)
T ss_pred EcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCCCE
Confidence 9999999888887775422 122222 4567777663 366776653
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.33 E-value=0.00061 Score=59.19 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=12.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.++|.+++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356899999999999754
No 208
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.32 E-value=0.0045 Score=59.76 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhc
Q 007085 379 QSQRERTLSAFRD 391 (618)
Q Consensus 379 ~~~r~~i~~~f~~ 391 (618)
...+++|+..|..
T Consensus 239 k~~~~ei~~~~~~ 251 (465)
T KOG3973|consen 239 KMHREEIQSILSA 251 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 3444556665543
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.27 E-value=0.0029 Score=55.75 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
...++|.+++|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999633
No 210
>PHA02533 17 large terminase protein; Provisional
Probab=97.18 E-value=0.0022 Score=69.14 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|.|+|++.+..+...+-.++..+=-.|||.+....++..... ..+..+++++|+...|..+++.++.+...
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56899999999887655667888899999998766444433322 12458999999999999999888765432
Q ss_pred C----ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCC
Q 007085 200 L----DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 200 ~----~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
. ...+.... .....+.++..|.+.|.. .....=.+++++|+||+|.+.+ +...+..+...+..
T Consensus 131 ~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~las 197 (534)
T PHA02533 131 LPDFLQPGIVEWN----KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISS 197 (534)
T ss_pred CHHHhhcceeecC----ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHc
Confidence 1 11110000 011112344555444421 1111223567899999997644 33444444444432
Q ss_pred --CCcEEEEEee
Q 007085 276 --NRQSMMFSAT 285 (618)
Q Consensus 276 --~~~~l~lSAT 285 (618)
..+++++|.+
T Consensus 198 g~~~r~iiiSTp 209 (534)
T PHA02533 198 GRSSKIIITSTP 209 (534)
T ss_pred CCCceEEEEECC
Confidence 2344444443
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.13 E-value=0.0011 Score=64.41 Aligned_cols=58 Identities=26% Similarity=0.443 Sum_probs=50.1
Q ss_pred HHHHHHhcCCccEEEEcCccccCCCCCC--------ccEEEEcCCCCChhHHHHHhccCCCCCCcc
Q 007085 384 RTLSAFRDGRFNILIATDVAARGLDVPN--------VDLIIHYELPNTSETFVHRTGRTGRAGKKG 441 (618)
Q Consensus 384 ~i~~~f~~g~~~vLVaT~~~~~GlDi~~--------~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g 441 (618)
...+.|.+|+.+|+|.+++.+.||.+.. -++.|.+.+||+....+|..||++|.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4567899999999999999999998753 346788999999999999999999998743
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.01 Score=61.15 Aligned_cols=130 Identities=13% Similarity=0.117 Sum_probs=67.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE-cC-cHHHHHHHHHHHHHhCCCCceEEEEcCCchHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL-AP-TRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil-~P-t~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 214 (618)
..+++.+|||+|||.++.-.+........ ..+.++.++ +- .+.-+..+...+.+.. ++.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv------------ 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPV------------ 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHHHHHHHHHHhhcC-Ccce------------
Confidence 45889999999999876433322211100 013334443 33 3344433333333221 1111
Q ss_pred HHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCCCC-CcEEEEEeeCch-HHH
Q 007085 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQN-RQSMMFSATMPP-WIR 291 (618)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~-~~~l~lSAT~~~-~~~ 291 (618)
.++-++..+...+.. +.++++||||++.+..... ....+..++....+. -.++++|||... .+.
T Consensus 237 ---------~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 237 ---------KAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ---------EeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 112244555554443 4678999999999875321 123445555555433 467899999864 344
Q ss_pred HHHHHh
Q 007085 292 SLTNKY 297 (618)
Q Consensus 292 ~~~~~~ 297 (618)
..+..|
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 444444
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.07 E-value=0.0013 Score=67.94 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHH------hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 122 LFPIQKAVLEPA------MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 122 l~~~Q~~~i~~i------~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
|.+-|+++++.+ ..+.+++|.++-|+|||.++ -.+...+ + ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~-~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYL-R-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHh-c-------cccceEEEecchHHHHHhc
Confidence 678899998888 56678999999999999733 2333332 2 1356799999997666655
No 214
>PRK08116 hypothetical protein; Validated
Probab=97.01 E-value=0.016 Score=57.11 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=58.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
.+++.+++|+|||..+ .+++..+.+. +..++ +++..++..++...+.... .
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~--------~~~v~-~~~~~~ll~~i~~~~~~~~------------~------- 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK--------GVPVI-FVNFPQLLNRIKSTYKSSG------------K------- 166 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc--------CCeEE-EEEHHHHHHHHHHHHhccc------------c-------
Confidence 4999999999999854 4555555441 23344 4444556554443332100 0
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc--cCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM--LSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIR 291 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~--~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~ 291 (618)
.+...+++. +.+.++|||||++.. .++ ....+..+++.. ....++|+.|-..+..+.
T Consensus 167 ---------~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 ---------EDENEIIRS-------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred ---------ccHHHHHHH-------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 011111111 456789999999642 222 334455555543 344566766666555443
No 215
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.00 E-value=0.0015 Score=66.16 Aligned_cols=123 Identities=18% Similarity=0.114 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~ 201 (618)
|++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+..+..+.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999988 5678999999999999977655555544321 1244699999999999999998887532110
Q ss_pred eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC-CC-CCCcceEEEccch
Q 007085 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LN-LSEVQFVVLDEAD 255 (618)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~-~~~~~~vViDEaH 255 (618)
.. ................+.|.|...+...+.+.. .. --.-.+-++|+..
T Consensus 74 ~~----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000001112222335788899888855443221 11 1123567777777
No 216
>PRK06921 hypothetical protein; Provisional
Probab=96.99 E-value=0.012 Score=57.81 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=19.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~ 163 (618)
..++++.+++|+|||..+ .+++..+.+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhh
Confidence 467999999999999744 455555443
No 217
>PRK12377 putative replication protein; Provisional
Probab=96.99 E-value=0.012 Score=56.79 Aligned_cols=103 Identities=15% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 216 (618)
.++++.+++|+|||..+ .++...+.+ .+..+ ++++..+|..++...+... .
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~~~~~------------~------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSV-IVVTVPDVMSRLHESYDNG------------Q------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCe-EEEEHHHHHHHHHHHHhcc------------c-------
Confidence 57999999999999744 444445443 13334 4445556666554433110 0
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCC-CCCcEEEEEeeC
Q 007085 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATM 286 (618)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~ 286 (618)
+.. ..+.. +.++++|||||++...... ....+..+++.-. ....+++.|--.
T Consensus 153 -----------~~~---~~l~~----l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 153 -----------SGE---KFLQE----LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred -----------hHH---HHHHH----hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 111 11221 5688999999996443222 2334444554432 345566655433
No 218
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.99 E-value=0.0032 Score=60.35 Aligned_cols=85 Identities=25% Similarity=0.364 Sum_probs=68.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCC-CCceEEEEcCC-chHHHHHHhhc-CCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGT-PISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..|.+||||..-.-|..+.+.++.+-. ...++-++.-. ...++...+.. .++|.|+||++|..+++...+.+.++.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 368899999998888888888887632 34454555444 67777777775 5899999999999999999999999999
Q ss_pred EEEccchh
Q 007085 249 VVLDEADQ 256 (618)
Q Consensus 249 vViDEaH~ 256 (618)
||||--|.
T Consensus 205 ivlD~s~~ 212 (252)
T PF14617_consen 205 IVLDWSYL 212 (252)
T ss_pred EEEcCCcc
Confidence 99998774
No 219
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.014 Score=58.95 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=39.4
Q ss_pred CCcceEEEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhc
Q 007085 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
.+.++|+||.+.++.. ......+..+.+.+.++..+++++||...+....+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 4578999999998752 234566677777777888889999998765555555443
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.018 Score=55.54 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=28.4
Q ss_pred CCCcceEEEccchhccCCCcHH-HHHHHHHHC-CCCCcEEEEEeeCchHH
Q 007085 243 LSEVQFVVLDEADQMLSVGFAE-DVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~-~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
+..+++|||||++......+.. .+..|+..- .....+++.|--.+..+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 4578899999999865443433 344555542 33455666555544433
No 221
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.83 E-value=0.0052 Score=63.13 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=45.8
Q ss_pred CCCCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 118 GISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
.+...+|-|.+-+..+. ...++|+.+|+|+|||++.+..++......+. ...+.++..-|..-.+....++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHHH
Confidence 34556777766555443 45679999999999998665555554443221 2345677666666566666655
Q ss_pred HH
Q 007085 194 HE 195 (618)
Q Consensus 194 ~~ 195 (618)
+.
T Consensus 88 ~~ 89 (755)
T KOG1131|consen 88 KR 89 (755)
T ss_pred HH
Confidence 53
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.81 E-value=0.02 Score=60.21 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=37.8
Q ss_pred EChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcHHHHHHHHHHC-CCCCcEEEEEeeCchH-HHHHHHHh
Q 007085 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMPPW-IRSLTNKY 297 (618)
Q Consensus 227 ~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l-~~~~~~l~lSAT~~~~-~~~~~~~~ 297 (618)
.++..+...+.. +.++++||||.+-+.... .....+..++... .+....++++||.... +...+..|
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 345555555543 446899999998653221 1223455555522 2334578899998753 44444444
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=96.79 E-value=0.0056 Score=58.85 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCCcceEEEccchhccCC-CcHHHHHHHHHHCCC-CCcEEEEEeeCch
Q 007085 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPP 288 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~-~~~~l~lSAT~~~ 288 (618)
+.+.++|||||+|.+... .+...+..+++.+.. ..+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 346789999999987532 234455566665543 4456778887654
No 224
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.79 E-value=1.3 Score=49.44 Aligned_cols=71 Identities=13% Similarity=0.266 Sum_probs=55.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+|+.-+.++++.|.+. .+.+..+++..+...+...+. ...+||||| .+....+++.++++
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT------dv~arGIDip~V~~ 316 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIAT------DVAARGLDVERISL 316 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc------chHhcCCCcccCCE
Confidence 357999999999999999999875 467888898887766554433 358999999 34455678999999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 317 VI~ 319 (629)
T PRK11634 317 VVN 319 (629)
T ss_pred EEE
Confidence 984
No 225
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.79 E-value=0.013 Score=69.95 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
..|++-|++|+..++.. +-++|++..|+|||.+. -.++..+.... ...+..++.++||-.-+...
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~----e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLP----ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHh----hccCceEEEEechHHHHHHH
Confidence 36999999999999965 56999999999999753 23333322111 12256789999997666554
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=96.76 E-value=0.0076 Score=58.14 Aligned_cols=46 Identities=22% Similarity=0.458 Sum_probs=30.5
Q ss_pred CCCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
+.+++++|||++|.+... .+...+..+++.+......+++|+|.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 345678999999977432 3455677777776554455667776544
No 227
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.75 E-value=0.0037 Score=60.42 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=34.0
Q ss_pred CCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 241 ~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
.....++++|+||||.|... -...+.+.++......++++.+.-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 34667899999999998654 34556677777777778888877754
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.72 E-value=0.0031 Score=55.10 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
+..+++.+|+|+|||..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 356899999999999854
No 229
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.72 E-value=0.017 Score=69.97 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|++.|++|+..++.. +-++|++..|+|||.+ +-.++..+... ....+..++.++||-.-+.... +.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L~----e~- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL----PESERPRVVGLGPTHRAVGEMR----SA- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh----hcccCceEEEECCcHHHHHHHH----hc-
Confidence 46999999999999975 4589999999999974 33444433211 1122567899999976665443 21
Q ss_pred CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHH----HhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC
Q 007085 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI----KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l----~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
.+. ..|..+|+... .........-++|||||+=++. ...+..++..+
T Consensus 1036 -Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~ 1086 (1747)
T PRK13709 1036 -GVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALI 1086 (1747)
T ss_pred -Ccc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhh
Confidence 111 11222222111 0111112345799999999763 45666777766
Q ss_pred CC-CCcEEEEEe
Q 007085 274 PQ-NRQSMMFSA 284 (618)
Q Consensus 274 ~~-~~~~l~lSA 284 (618)
+. ..++|++-=
T Consensus 1087 ~~~garvVLVGD 1098 (1747)
T PRK13709 1087 AAGGGRAVSSGD 1098 (1747)
T ss_pred hcCCCEEEEecc
Confidence 54 567766543
No 230
>PRK08727 hypothetical protein; Validated
Probab=96.70 E-value=0.0078 Score=58.04 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=26.7
Q ss_pred CCCcceEEEccchhccCCC-cHHHHHHHHHHCCC-CCcEEEEEeeCchHH
Q 007085 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWI 290 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~-~~~~l~lSAT~~~~~ 290 (618)
+.++++|||||+|.+.... ....+..+++.... ..++|+.|-.+|...
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 3456789999999876432 22334445554432 334555555455443
No 231
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.037 Score=56.46 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE-c-CcH-HHHHHHHHHHHHhCCCCceEEEEcCCchHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL-A-PTR-ELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil-~-Pt~-~La~q~~~~l~~~~~~~~~~~~~~~~~~~~ 213 (618)
+.+++.+++|+|||.++...+. .+.. .+.++.++ + |.+ ..+.|+.......
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~--------~GkkVglI~aDt~RiaAvEQLk~yae~l----------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH--------cCCcEEEEecCCcchHHHHHHHHHhhhc-----------------
Confidence 4578999999999986544333 2222 13445444 3 233 2334443322211
Q ss_pred HHHHhhcCCCEE-EEChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCch-HH
Q 007085 214 QMRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP-WI 290 (618)
Q Consensus 214 ~~~~~~~~~~Il-v~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~-~~ 290 (618)
++.++ +.++..+.+.+..... ..++++|+||-+=+.... .....+..++....+..-++.+|||... .+
T Consensus 296 -------gipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 296 -------GFEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -------CCcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 12333 3466666665543111 225899999999765432 1233344455444455556779998654 44
Q ss_pred HHHHHHh
Q 007085 291 RSLTNKY 297 (618)
Q Consensus 291 ~~~~~~~ 297 (618)
...+..|
T Consensus 368 ~~i~~~F 374 (436)
T PRK11889 368 IEIITNF 374 (436)
T ss_pred HHHHHHh
Confidence 5555554
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.65 E-value=0.019 Score=53.27 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=33.4
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
++|.+++|+|||..++..+...+.+ +..++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---------g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---------GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---------CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999998665555554422 556777765 46667777766654
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.013 Score=57.13 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=35.9
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+.++.++++.+++|+|||..+. ++...+.+ ...-++++++.+|+.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~-Ai~~~l~~---------~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAI-AIGNELLK---------AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHH-HHHHHHHH---------cCCeEEEEEHHHHHHHHHHHHh
Confidence 3367899999999999998653 34444433 3345666677788887766654
No 234
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.01 Score=60.66 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=62.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc-Cc-HHHHHHHHHHHHHhCCCCceEEEEcCCchHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA-PT-RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~-Pt-~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~ 213 (618)
+..+++.+|||+|||.+....+...+... + ..++.+++ .+ +.-+.++...+.+.. ++.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~------G-~~~V~lit~D~~R~ga~EqL~~~a~~~-gv~~----------- 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF------G-ASKVALLTTDSYRIGGHEQLRIFGKIL-GVPV----------- 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------C-CCeEEEEecccccccHHHHHHHHHHHc-CCce-----------
Confidence 45689999999999986644333332220 0 12344433 22 111222223222221 1111
Q ss_pred HHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCCCCCcEEEEEeeCchHH-H
Q 007085 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWI-R 291 (618)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~~~-~ 291 (618)
..+-++..+...+.+ +.+.++|+||++-+..... ..+.+..+.....+...+++++||..... .
T Consensus 198 ----------~~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 198 ----------HAVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----------EecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 123344444444432 5667899999997542111 12222222222223345788999986543 3
Q ss_pred HHHHHh
Q 007085 292 SLTNKY 297 (618)
Q Consensus 292 ~~~~~~ 297 (618)
..+..|
T Consensus 264 evi~~f 269 (374)
T PRK14722 264 EVVQAY 269 (374)
T ss_pred HHHHHH
Confidence 344444
No 235
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.58 E-value=0.019 Score=63.99 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
..+.......|++-|++|+..- ..+++|.|..|||||.+.+.-+...+.. . .....++|+++.|+..|..+.+
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~-~----~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLAR-G----QAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHh-C----CCCHHHeEEEeccHHHHHHHHH
Confidence 3344444467999999999643 3578999999999998765444433322 1 1124479999999999999999
Q ss_pred HHHHhC
Q 007085 192 EFHESA 197 (618)
Q Consensus 192 ~l~~~~ 197 (618)
++.+.+
T Consensus 260 RL~~~l 265 (684)
T PRK11054 260 RIRERL 265 (684)
T ss_pred HHHHhc
Confidence 988764
No 236
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.57 E-value=0.016 Score=50.77 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=37.4
Q ss_pred ecCcCCHHHHHHHHHHHhcCC-ccEEEEcCccccCCCCCC--ccEEEEcCCCC
Q 007085 373 LHGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPN--VDLIIHYELPN 422 (618)
Q Consensus 373 lhg~~~~~~r~~i~~~f~~g~-~~vLVaT~~~~~GlDi~~--~~~VI~~~~p~ 422 (618)
+.-.....+...+++.|++.. ..||++|.-+.+|||+++ ++.||+...|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 333344556788899998654 379999988999999988 56788877664
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.56 E-value=0.058 Score=54.55 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=57.5
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (618)
..++++.++||+|||..+ .++...+.. .+..|+++ +...|..+..... +. .. .
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~--------~g~~V~y~-t~~~l~~~l~~~~---~~----------~~-~--- 235 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLD--------RGKSVIYR-TADELIEILREIR---FN----------ND-K--- 235 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHH--------CCCeEEEE-EHHHHHHHHHHHH---hc----------cc-h---
Confidence 478999999999999844 344444443 13445544 4455655443311 00 00 0
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCC-CCCcEEEEEeeCchHH
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~~~ 290 (618)
. ....+. .+.++++||||+.+...... ....+..+++... ....+|+.|--.+..+
T Consensus 236 ------------~---~~~~~~----~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 236 ------------E---LEEVYD----LLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred ------------h---HHHHHH----HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 0 000011 15578899999998654332 2344555555443 3445555555444444
No 238
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.54 E-value=0.00083 Score=60.76 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=55.7
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh
Q 007085 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219 (618)
Q Consensus 140 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (618)
+|.|+-|-|||.+.-+++...+.. ...+++|.+|+.+-++..++.+.+.+..+...... ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK-KKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccccc-cccccccccccc
Confidence 578999999997655444333221 12469999999988888877765543322111100 000000001111
Q ss_pred cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 220 ~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
....|-+..|+.+... ....+++|||||=.+ -.+.+..++. ....++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHh----hCCEEEEEeecc
Confidence 2456777777766542 224588999999987 3455555543 344778888985
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.53 E-value=0.015 Score=56.17 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=24.8
Q ss_pred CcceEEEccchhccCC-CcHHHHHHHHHHCCC-CCcEEEEEeeCch
Q 007085 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPP 288 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~-~~~~l~lSAT~~~ 288 (618)
++++|||||+|.+... .+...+..++..+.. ....+++|++.++
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 3578999999987532 234455555555432 2223444555443
No 240
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.52 E-value=0.021 Score=50.83 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=40.1
Q ss_pred CCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcEEEEEeeCchHHHHHH
Q 007085 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
...+++||+||+-..++.++ .+.+..+++..+....+|+++-.+|+++.+++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 56789999999997765543 56677788887888888888888888766654
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.50 E-value=0.043 Score=49.29 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=22.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
++|.+++|+|||..+... +..+.. .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i-~~~~~~--------~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL-ALNIAT--------KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHH-HHHHHh--------cCCEEEEEECCcc
Confidence 689999999999854333 323221 2456777665433
No 242
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.011 Score=66.92 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++++||||+|+|... ....+.++++..+..+.+|+++
T Consensus 118 ~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 357899999999998543 3344555666655666666655
No 243
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.02 Score=51.91 Aligned_cols=88 Identities=17% Similarity=0.085 Sum_probs=51.5
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (618)
.++.+||.||||...+..+-..... +.++++..|... ..+. ...+.-..+..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~---------g~~v~vfkp~iD----------~R~~-~~~V~Sr~G~~-------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA---------GMKVLVFKPAID----------TRYG-VGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc---------CCeEEEEecccc----------cccc-cceeeeccCCc--------
Confidence 5789999999998554444333222 667899988521 1111 11111111111
Q ss_pred hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
...++|-....+.+.+...... .+++.|.||||+-+
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~-~~~~~v~IDEaQF~ 94 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEK-PPVDCVLIDEAQFF 94 (201)
T ss_pred --ccceecCChHHHHHHHHhcccC-CCcCEEEEehhHhC
Confidence 1345666777777777654332 23889999999964
No 244
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.47 E-value=0.016 Score=54.06 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=36.0
Q ss_pred CCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
+++++|+||-+-+.... .....+.+++..+.+..-.++++||........+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 46789999999764321 1345666777777777778999999977654444444
No 245
>PRK09183 transposase/IS protein; Provisional
Probab=96.45 E-value=0.017 Score=56.55 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=19.1
Q ss_pred HHhCCCCEEEEccCCChhHHHHHH
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l~ 155 (618)
.+..+.++++.+|+|+|||..+..
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHH
Confidence 355678899999999999975543
No 246
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.44 E-value=0.016 Score=50.89 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCc---cEEEEcCc--cccCCCCCC--ccEEEEcCCCC
Q 007085 380 SQRERTLSAFRDGRF---NILIATDV--AARGLDVPN--VDLIIHYELPN 422 (618)
Q Consensus 380 ~~r~~i~~~f~~g~~---~vLVaT~~--~~~GlDi~~--~~~VI~~~~p~ 422 (618)
.+..++++.|++... .||+++.- +.+|||+++ ++.||+...|.
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 344678888886443 68888876 999999988 57888877764
No 247
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.43 E-value=0.024 Score=54.46 Aligned_cols=43 Identities=12% Similarity=0.313 Sum_probs=25.3
Q ss_pred CcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
..++|||||+|.+... .+...+..++..+......+++|++.+
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 3468999999987543 124556666655433223455666644
No 248
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.025 Score=56.99 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=24.4
Q ss_pred ceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
-+++|||+||+. ..+...++-.+ .+-.++++-||-.+
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~v-E~G~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHV-ENGTIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhh-cCCeEEEEeccCCC
Confidence 469999999973 23344444444 46678888888544
No 249
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.39 E-value=0.007 Score=63.60 Aligned_cols=143 Identities=13% Similarity=0.267 Sum_probs=82.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH-HHHHHHHHHHHhCCCCceEEEE--cCCchHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVY--GGTPISHQ 214 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~l~~~~~~~~~~~~~--~~~~~~~~ 214 (618)
-.++.+..|||||.++.+.++..++.. ..+.+++++-|+.. |...++.++......+.....+ ...+. .
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--E 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--E
Confidence 367899999999998887777776652 12467898988876 6677777777554332211111 11100 0
Q ss_pred HHHhhc-CCCEEEECh-HHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCC--CCcEEEEEeeCchHH
Q 007085 215 MRALDY-GVDAVVGTP-GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWI 290 (618)
Q Consensus 215 ~~~~~~-~~~Ilv~T~-~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~--~~~~l~lSAT~~~~~ 290 (618)
. .+.. +..|++..- +...+ + .....+.++++|||..+. ...+..++.+++. ....+++|.||+...
T Consensus 75 i-~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 75 I-KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred E-EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 0 0111 334555443 11111 1 123446899999999873 3456666666642 222488899987544
Q ss_pred HHHHHHhc
Q 007085 291 RSLTNKYL 298 (618)
Q Consensus 291 ~~~~~~~l 298 (618)
.-+...|+
T Consensus 145 ~w~~~~f~ 152 (396)
T TIGR01547 145 HWVKKRFI 152 (396)
T ss_pred cHHHHHHH
Confidence 44444444
No 250
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.1 Score=55.49 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=34.3
Q ss_pred hHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCCCCCcEEEEEeeCch-HHHHHHHHh
Q 007085 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKY 297 (618)
Q Consensus 229 ~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~-~~~~~~~~~ 297 (618)
+..+...+.. +.++++||||.+-+..... ....+..+. .......+++++++... .+...+..|
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 3445555543 4578999999997642211 112222222 22344567888888753 344444443
No 251
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.37 E-value=0.038 Score=60.87 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=84.2
Q ss_pred HHHcCCCCChHHHHHHHHHHhCCC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 114 LARRGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
+.....+....-|.+.+..++... -++|.|+-|=|||.+.-+++. .+.+.. ....++|.+|+.+-++.+++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~------~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA------GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc------CCceEEEeCCCHHHHHHHHH
Confidence 444334444444455556666543 488999999999987776662 222211 13579999999999888887
Q ss_pred HHHHhCCCCce--EEEEcCCchHHHHHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHH
Q 007085 192 EFHESAPSLDT--ICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (618)
Q Consensus 192 ~l~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~ 268 (618)
.+.+-+..+.. .+..... ....... ....|=+.+|.... ..-++||||||=.+ -.+.+.+
T Consensus 280 fa~~~l~~lg~~~~v~~d~~---g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~ 342 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDAL---GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHK 342 (758)
T ss_pred HHHHhHHHhCCccccccccc---cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHH
Confidence 76654322211 0100000 0000001 11234445544332 11678999999987 4566666
Q ss_pred HHHHCCCCCcEEEEEeeCc
Q 007085 269 ILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 269 il~~l~~~~~~l~lSAT~~ 287 (618)
++... +.++||.|+.
T Consensus 343 l~~~~----~rv~~sTTIh 357 (758)
T COG1444 343 LLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHhhc----CceEEEeeec
Confidence 66654 4788999985
No 252
>PTZ00293 thymidine kinase; Provisional
Probab=96.35 E-value=0.026 Score=52.69 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=25.1
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
.++.+||+||||...+..+.....+ +.+++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~a---------g~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYS---------EKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHc---------CCceEEEEec
Confidence 5789999999997555544444332 5678888885
No 253
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.34 E-value=0.013 Score=63.49 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=59.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
.++|.+++|+|||..+ .++...+.+. ..+.+++++. ..+++++....+.+.
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~------~~g~~V~Yit-aeef~~el~~al~~~--------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRL------YPGTRVRYVS-SEEFTNEFINSIRDG--------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEee-HHHHHHHHHHHHHhc---------------------
Confidence 3899999999999733 3444443321 1134455554 456666554444321
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCCC-CCcEEEEEeeCchHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWI 290 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~-~~~~l~lSAT~~~~~ 290 (618)
..+.+.. .+.++++|||||+|.+.... ....+..+++.+.. +.++|+.|-..|..+
T Consensus 367 ----------~~~~f~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 367 ----------KGDSFRR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred ----------cHHHHHH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 0111111 14567899999999875532 24455566666544 456666555555443
No 254
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.32 E-value=0.03 Score=59.42 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=59.3
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
.+++.|++|+|||... .++...+... ..+.+++++.+ .++.......+....
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 4899999999999633 4555544331 12445666555 566666655554210
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcHHHHHHHHHHCCC-CCcEEEEEeeCch
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPP 288 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~-~~~~l~lSAT~~~ 288 (618)
+.+..+... +.++++|||||+|.+... ...+.+..+++.+.. ..|+|+.|-.+|.
T Consensus 195 ------------~~~~~~~~~----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~ 251 (450)
T PRK14087 195 ------------KEIEQFKNE----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPE 251 (450)
T ss_pred ------------hHHHHHHHH----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 111111111 457789999999987532 134455555655543 3455444444443
No 255
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.31 E-value=0.0059 Score=56.04 Aligned_cols=50 Identities=26% Similarity=0.342 Sum_probs=27.9
Q ss_pred HHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 130 i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
..++.+++++++.+++|+|||..+. ++...+.+ .+..++++ +..+|...+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~--------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAV-AIANEAIR--------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHH-HHHHHHHH--------TT--EEEE-EHHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHH-HHHHHhcc--------CCcceeEe-ecCceeccc
Confidence 3444567889999999999998654 34434433 14445554 445665544
No 256
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.31 E-value=0.012 Score=55.96 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=60.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
-++|.+++|+|||- .+.++...+.+. .++.+++++.. .+........+...
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~------~~~~~v~y~~~-~~f~~~~~~~~~~~--------------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQ------HPGKRVVYLSA-EEFIREFADALRDG--------------------- 86 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHH------CTTS-EEEEEH-HHHHHHHHHHHHTT---------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhc------cccccceeecH-HHHHHHHHHHHHcc---------------------
Confidence 38999999999997 445555555431 12445666654 35555544444321
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCC-CCCcEEEEEeeCchH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPW 289 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~~ 289 (618)
..+.+.+. +...++||||++|.+.... +...+..+++.+. ...++|+.|..+|..
T Consensus 87 ----------~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 87 ----------EIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ----------SHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ----------cchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 11122221 4578899999999986531 2345555555553 345666666666654
No 257
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.30 E-value=0.015 Score=65.20 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
.|++-|++++... ...++|.|..|||||.+.+.-+...+.... -+..++|+|+.|+..|.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999998764 457899999999999876555544443211 1134699999999999999999987653
No 258
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.29 E-value=0.027 Score=60.20 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=57.0
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 216 (618)
..+++.+++|+|||..+ .++...+.+. ..+..++++ +...+..++...+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~------~~~~~v~yi-~~~~~~~~~~~~~~~~-------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK------NPNAKVVYV-TSEKFTNDFVNALRNN-------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEE-EHHHHHHHHHHHHHcC--------------------
Confidence 34899999999999743 4444444331 113445555 4445655544444210
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCC-CCCcEEEEEeeCchHH
Q 007085 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (618)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~~~ 290 (618)
+.+.+... +..+++|||||+|.+.... ....+..++..+. ...++|+.|.++|..+
T Consensus 201 -----------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 201 -----------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred -----------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 11222221 3357799999999875432 2234444554443 3345544444444443
No 259
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.28 E-value=0.019 Score=56.94 Aligned_cols=120 Identities=15% Similarity=0.087 Sum_probs=58.4
Q ss_pred HHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEE--cC
Q 007085 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--GG 208 (618)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~--~~ 208 (618)
.-+..+.-++|.+++|+|||..++..+...+.. .+..++++.- ..-..++...+............. ..
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~ 95 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFI 95 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCcccc
Confidence 345556679999999999997555444433321 1456777753 233444444443322112111000 00
Q ss_pred CchHH---HHHHhhcCCCEEE------EChHHHHHHHHhcCCCCCCcceEEEccchhccCC
Q 007085 209 TPISH---QMRALDYGVDAVV------GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (618)
Q Consensus 209 ~~~~~---~~~~~~~~~~Ilv------~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~ 260 (618)
..... ....+.....+.+ .|.+.+...+..... -..+++||||.++.+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 96 YTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred ccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHHHhcc
Confidence 11111 1112221122222 145556555543221 236889999999987543
No 260
>PF13173 AAA_14: AAA domain
Probab=96.25 E-value=0.046 Score=47.18 Aligned_cols=38 Identities=8% Similarity=0.327 Sum_probs=26.4
Q ss_pred CcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
.-.+|+|||+|.+.+ +...++.+.+.. ++.++++++..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 556899999999864 567777777754 45666655444
No 261
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.25 E-value=0.02 Score=61.95 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHHHh---CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~---~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+-+.|.=.+-|+.+. +.+-.++..|=+.|||.+..+.++..+.. .+.+++|++|...-++++++.+++.
T Consensus 168 ~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 168 EAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHH
Confidence 334555555555444 34568889999999998665554433321 1568999999999999998887766
Q ss_pred CCCCc---------e-EEEEcCCc-hHHHH-HHhhcC-CCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcH
Q 007085 197 APSLD---------T-ICVYGGTP-ISHQM-RALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 197 ~~~~~---------~-~~~~~~~~-~~~~~-~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
+..+. . ..+.++.. ..... ...+.+ ..|.+.+.. .....-..+++||||||+.+..
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~---- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP---- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----
Confidence 54221 1 11111110 00000 000000 123332211 1112224578999999998743
Q ss_pred HHHHHHHHHCC-CCCcEEEEEeeC
Q 007085 264 EDVEVILERLP-QNRQSMMFSATM 286 (618)
Q Consensus 264 ~~~~~il~~l~-~~~~~l~lSAT~ 286 (618)
..+..++-.+. ...+++++|.+-
T Consensus 309 ~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHHccCCCceEEEeCCC
Confidence 44555554443 356666666664
No 262
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.24 E-value=0.11 Score=52.85 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc-HHHHHHHHHHHHHhCCCCceEEEEcCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT-RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt-~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~ 214 (618)
++.+.+.+|||-|||.+..=.+....+. ..+...+||...| |.=|..+.+...+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~------~~~~kVaiITtDtYRIGA~EQLk~Ya~im----------------- 259 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML------KKKKKVAIITTDTYRIGAVEQLKTYADIM----------------- 259 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh------ccCcceEEEEeccchhhHHHHHHHHHHHh-----------------
Confidence 5678999999999998643222222211 0112234444433 333333333333221
Q ss_pred HHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc-cCCCcHHHHHHHHHHCCCCCcEEEEEeeCch-HHHH
Q 007085 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRS 292 (618)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~-~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~-~~~~ 292 (618)
.-+-.+|-+|.-|...+.. +.++++|.||=+-+- .|.....++.+++....+.--.|.+|||... .+.+
T Consensus 260 -----~vp~~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 260 -----GVPLEVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred -----CCceEEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 1123456677777766654 778899999988753 2222345556666655445556889999864 4455
Q ss_pred HHHHhc
Q 007085 293 LTNKYL 298 (618)
Q Consensus 293 ~~~~~l 298 (618)
.+..|-
T Consensus 331 i~~~f~ 336 (407)
T COG1419 331 IIKQFS 336 (407)
T ss_pred HHHHhc
Confidence 555543
No 263
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.21 E-value=0.034 Score=57.91 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l 154 (618)
.-+-......+..+..++++++.+++|+|||..+.
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 33455666777788888999999999999998663
No 264
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.20 E-value=0.063 Score=56.60 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=54.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
.+++.+++|+|||..+ .++...+.+. ..+..++++.. ..+..+....+...
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~~-~~~~~~~~~~~~~~--------------------- 188 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVSS-EKFTNDFVNALRNN--------------------- 188 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEEH-HHHHHHHHHHHHcC---------------------
Confidence 4789999999999744 4555554431 11345666643 34444433333210
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCC-CCCcEEEEEeeCch
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPP 288 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~ 288 (618)
+.+.+... +.++++|||||+|.+.... ....+..++..+. ...++| +|++.++
T Consensus 189 ----------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ii-its~~~p 243 (405)
T TIGR00362 189 ----------KMEEFKEK-------YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIV-LTSDRPP 243 (405)
T ss_pred ----------CHHHHHHH-------HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEE-EecCCCH
Confidence 11222222 2346789999999875432 2233444554442 345554 5555443
No 265
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.13 E-value=0.026 Score=64.13 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|++-|++++... ...++|.|..|||||.+...=+.. ++... .-+..++|+|+-|+..|..+.+++.++.+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~-Li~~~----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~ 75 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAW-LLSVE----NASPHSIMAVTFTNKAAAEMRHRIGALLGT 75 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHH-HHHcC----CCCHHHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 35899999999754 357999999999999876444443 33311 012347999999999999999999887531
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHH-HHHhcC--CCCCCcceEEEccchh
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNA--LNLSEVQFVVLDEADQ 256 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~-~l~~~~--~~~~~~~~vViDEaH~ 256 (618)
. ...+.|+|...+.. ++.... ..+ .-.+-|+|+.+.
T Consensus 76 ~--------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 76 S--------------------ARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred c--------------------ccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 0 12467888887743 333211 111 113456777653
No 266
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.03 Score=56.74 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHhCCC----CEEEEccCCChhHHHHHHHHHHHH
Q 007085 122 LFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~----~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
++|||...+..+.... -.|+.+|.|.|||..+. .+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~-~~A~~l 46 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE-RLAAAL 46 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH-HHHHHH
Confidence 5789999998887643 37899999999998653 333343
No 267
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.12 E-value=0.033 Score=53.50 Aligned_cols=43 Identities=12% Similarity=0.303 Sum_probs=26.8
Q ss_pred CcceEEEccchhccCCCcHHHHHHHHHHCCCCCc-EEEEEeeCch
Q 007085 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-SMMFSATMPP 288 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~-~l~lSAT~~~ 288 (618)
..++|||||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4678999999987443 34445555655443433 5777777544
No 268
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.10 E-value=0.036 Score=66.49 Aligned_cols=124 Identities=20% Similarity=0.191 Sum_probs=78.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~ 200 (618)
++|+-|.++|. ..+.+++|.|..|||||.+.+--++..+... ....++|+|+=|+..|..+.+++.+.+...
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 36899999997 3578999999999999998766666665431 112469999999999999888887654211
Q ss_pred ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCC--cceEEEccchh
Q 007085 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE--VQFVVLDEADQ 256 (618)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~--~~~vViDEaH~ 256 (618)
-. .........+.+..-...-|+|...+...+.+.....-+ ..+=|.||...
T Consensus 73 ~~----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 011111122223333466789998886544433322222 24567888875
No 269
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.09 E-value=0.025 Score=64.18 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
.|++-|++++... ...++|.|..|||||.+...=+...+.... -....+|+|+-|+..|.++.+++.++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 4899999999754 357999999999999876544443332211 123469999999999999999998875
No 270
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.06 E-value=0.023 Score=56.14 Aligned_cols=17 Identities=41% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
..+|+++|.|+|||..+
T Consensus 163 pSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA 179 (554)
T ss_pred CceEEecCCCCchHHHH
Confidence 35999999999999844
No 271
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.05 E-value=0.034 Score=58.83 Aligned_cols=108 Identities=11% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 216 (618)
..+++.+++|+|||..+ .++...+.+ .+.+++++.. ..+..+....+..-
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~--------~~~~v~yi~~-~~f~~~~~~~l~~~-------------------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE--------SGGKILYVRS-ELFTEHLVSAIRSG-------------------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEeeH-HHHHHHHHHHHhcc--------------------
Confidence 34899999999999743 455555433 1345666654 45544433333210
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCC-CCCcEEEEEeeCchHHHH
Q 007085 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWIRS 292 (618)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~-~~~~~l~lSAT~~~~~~~ 292 (618)
+.+.+.. .+.++++++|||+|.+.... ....+..+++.+. ...++|+.|-+.|..+..
T Consensus 192 -----------~~~~f~~-------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 192 -----------EMQRFRQ-------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred -----------hHHHHHH-------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 0111111 13467899999999876432 2344455554432 345555555555555443
No 272
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.02 E-value=0.043 Score=68.38 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
..|++.|++|+..++.. +-++|++..|+|||.+. ..++..+....+ ..+.+++.++||-.-+...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~~~----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQAFE----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHHHH----hcCCeEEEEeChHHHHHHH
Confidence 46999999999999875 44788999999999743 222222222111 1256799999996665544
No 273
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.97 E-value=0.02 Score=61.65 Aligned_cols=70 Identities=23% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhC-----C----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 124 PIQKAVLEPAMQ-----G----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 124 ~~Q~~~i~~i~~-----~----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
|+|+-++..++- + +.+++.-+=+-|||......++..+.-. ...+..++++++++..|..+++.++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 678877777662 1 3478888999999975544434343321 1236789999999999999999988
Q ss_pred HhCC
Q 007085 195 ESAP 198 (618)
Q Consensus 195 ~~~~ 198 (618)
++..
T Consensus 76 ~~i~ 79 (477)
T PF03354_consen 76 KMIE 79 (477)
T ss_pred HHHH
Confidence 8753
No 274
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.97 E-value=0.13 Score=53.99 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=33.2
Q ss_pred cceEEEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 246 VQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 246 ~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
.++||||.+-+... ...-..+..+.....++.-++.++||...+....+..|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 48899999955422 11334455566666677778888998876555544443
No 275
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.96 E-value=0.066 Score=49.07 Aligned_cols=144 Identities=16% Similarity=0.092 Sum_probs=76.6
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH-HHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA-KQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La-~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+....++|...+|.|||.+++--++..+-. +.+|+|+.=.+--. .--...+.+ ++.+. ....+....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---------G~~V~ivQFlKg~~~~GE~~~l~~-l~~v~--~~~~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH---------GKKVGVVQFIKGAWSTGERNLLEF-GGGVE--FHVMGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC---------CCeEEEEEEecCCCccCHHHHHhc-CCCcE--EEECCCCCc
Confidence 345679999999999999887777766533 67777775332110 011122222 22222 221111100
Q ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcEEEEEeeCchHH
Q 007085 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWI 290 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~ 290 (618)
... .. ...-.......+.... ..+.-..+++||+||+-..++.++ .+.+..++...|+...+|++--.+|+++
T Consensus 88 ~~~---~~-~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 88 WET---QD-RERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred ccC---CC-cHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 000 00 0000001111122211 123346789999999998777654 4566777777777777777777777766
Q ss_pred HHHH
Q 007085 291 RSLT 294 (618)
Q Consensus 291 ~~~~ 294 (618)
.+++
T Consensus 163 ie~A 166 (191)
T PRK05986 163 IEAA 166 (191)
T ss_pred HHhC
Confidence 6544
No 276
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.88 E-value=0.071 Score=52.33 Aligned_cols=114 Identities=15% Similarity=0.274 Sum_probs=59.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHHHhC-CCCceEEEEcCCchH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG---RGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPIS 212 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~---~~~~~~~lil~Pt~~La~q~~~~l~~~~-~~~~~~~~~~~~~~~ 212 (618)
.+++|.++|+.|||.. ++...+...... ...-+.+++-+|...-....+..+-..+ -..+. .....
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-----~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-----RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-----CCCHH
Confidence 5799999999999973 233332111111 1122456666777766666666654432 11110 01111
Q ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcE
Q 007085 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQS 279 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~ 279 (618)
... .....++. ...++++||||+|.++.-.. ...+..+++.+.+..++
T Consensus 132 ~~~--------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 132 KLE--------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred HHH--------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 000 01112333 34678999999999876542 23344455555555443
No 277
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.85 E-value=0.099 Score=55.46 Aligned_cols=111 Identities=11% Similarity=0.193 Sum_probs=57.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
.+++.+++|+|||..+ .++...+.+. ..+.+++++.. ..+.++....+...
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~------~~~~~v~yi~~-~~f~~~~~~~~~~~--------------------- 182 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYVVQN------EPDLRVMYITS-EKFLNDLVDSMKEG--------------------- 182 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHhcc---------------------
Confidence 5899999999999744 4444444331 11345666654 34444443333210
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-cHHHHHHHHHHCCC-CCcEEEEEeeCchHHHHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~il~~l~~-~~~~l~lSAT~~~~~~~~ 293 (618)
+.+.+...+ ..+.++|+|||+|.+.+.. ....+..++..+.. ..++|+.|-..|..+..+
T Consensus 183 ----------~~~~f~~~~------~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 183 ----------KLNEFREKY------RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred ----------cHHHHHHHH------HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 011121111 1257789999999876532 22344455544433 345444444455444443
No 278
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.77 E-value=0.14 Score=59.22 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.+++|+||+.+-++.+++.+++.+++.++..+++..+...+...+. ...+||||| .+....+++.++++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT------~iie~GIDIp~v~~ 733 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT------TIIETGIDIPNANT 733 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC------ChhhcccccccCCE
Confidence 56899999999999999999999888899999999988766654433 458999999 34455678999999
Q ss_pred EEEccchhc
Q 007085 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||++.++++
T Consensus 734 VIi~~a~~~ 742 (926)
T TIGR00580 734 IIIERADKF 742 (926)
T ss_pred EEEecCCCC
Confidence 999999874
No 279
>PLN03025 replication factor C subunit; Provisional
Probab=95.77 E-value=0.096 Score=53.21 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=24.8
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
...++|||||+|.+... ....+..+++..+....+++ +++.
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeCC
Confidence 35789999999998543 23444555555444455444 4443
No 280
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.76 E-value=0.057 Score=55.34 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=25.6
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
...++|||||+|.+... ....+..+++..+...++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987432 34455666666665666555443
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.76 E-value=0.079 Score=50.90 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=32.9
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+.-+++.+++|+|||+.++..+...+ + ++.++++++. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~--------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q--------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 3456699999999999986544444332 2 1456788874 33445555555443
No 282
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.75 E-value=0.045 Score=61.77 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
|++-|++++... ..+++|.|..|||||.+.+.-+...+.... .....+|+|+.|+..+.+..+++.+.+.
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 789999998753 458999999999999876555554443211 1234699999999999999999987653
No 283
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.74 E-value=0.033 Score=55.98 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
...+++||||||.|... ....+.++++.-+.++.+|++|..+.
T Consensus 112 g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 112 GIAQVVIVDPADAINRA-ACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred CCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCCCeEEEEECChh
Confidence 46789999999998433 34555566666566666777665543
No 284
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.71 E-value=0.1 Score=58.56 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=26.6
Q ss_pred CcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHH
Q 007085 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~ 291 (618)
...++||||+|++.. .....++..+. +.+++++++|-.+...
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCChHh
Confidence 456899999999732 33344444443 4567888887655433
No 285
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.70 E-value=0.22 Score=48.78 Aligned_cols=128 Identities=10% Similarity=0.142 Sum_probs=69.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC-c--HHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T--RELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P-t--~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+..+++.+++|+|||..+...+.. +.. .+..+.++.- + ...+.||....... .
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~----------- 130 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----G----------- 130 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCeEEEEecCCCCHHHHHHHHHHhhhc----C-----------
Confidence 356899999999999865433322 211 1334444432 2 24555555433322 1
Q ss_pred HHHHHhhcCCCEEE-EChHHHHHHHHhcCCCCCCcceEEEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCch-H
Q 007085 213 HQMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPP-W 289 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv-~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~-~ 289 (618)
+.+.. .++..+.+.+..-. ...++++||||.+=+... ......+.+++....+...++++|||... .
T Consensus 131 ---------~~~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 131 ---------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ---------ceEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 12222 34555544443211 134689999999976532 11233444555555555557889999754 5
Q ss_pred HHHHHHHh
Q 007085 290 IRSLTNKY 297 (618)
Q Consensus 290 ~~~~~~~~ 297 (618)
..+.+..|
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 55555554
No 286
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.69 E-value=0.034 Score=59.97 Aligned_cols=130 Identities=19% Similarity=0.169 Sum_probs=79.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC----CCceEEEEcCCchH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPIS 212 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~----~~~~~~~~~~~~~~ 212 (618)
+-.++..|=-.|||.... +++..++.. -.+.++++++|.+..++.+++++...+. ...+..+.+ ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 557899999999998554 555544431 1367899999999999999999877543 211212221 111
Q ss_pred HHHHHhhcC--CCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCCcEEEEEeeCc
Q 007085 213 HQMRALDYG--VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMP 287 (618)
Q Consensus 213 ~~~~~~~~~--~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~ 287 (618)
.-.+.++ ..|.+++ .-......=..++++|||||+-+.+ ..+..++-.+ ..++++|++|.|-.
T Consensus 326 --~i~f~nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 326 --SFSFPDGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred --EEEecCCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCC
Confidence 0011122 2455553 1111222345799999999998754 4444444333 24889999998843
No 287
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.68 E-value=0.074 Score=56.14 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHHHhC------C----CCEEEEccCCChhHHHHH-HHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQ------G----RDMIGRARTGTGKTLAFG-IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~------~----~~~li~~~tGsGKT~~~l-~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
+.+-|+|+-++..+.- + +..+|..|-+-|||..+. +.+...+..+ ..+..+.|++|+.+.+.+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHHH
Confidence 5588999999988872 1 347999999999997544 2333333332 236689999999999999
Q ss_pred HHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH---HHHHHh--cCCCCCCcceEEEccchhccCCCcH
Q 007085 189 VEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV---IDLIKR--NALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l---~~~l~~--~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
.+..++.+..... . .........+....++... +..+.+ ...+-.+..++|+||.|.+....
T Consensus 134 ~F~~ar~mv~~~~--------~---l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 134 SFNPARDMVKRDD--------D---LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred hhHHHHHHHHhCc--------c---hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 9998887653222 0 0001111112222222222 222222 22334567799999999875431
Q ss_pred HHHHHHHHHC--CCCCcEEEEEe
Q 007085 264 EDVEVILERL--PQNRQSMMFSA 284 (618)
Q Consensus 264 ~~~~~il~~l--~~~~~~l~lSA 284 (618)
..+..+..-+ +++.+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 3344444333 34566666665
No 288
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.67 E-value=0.096 Score=47.28 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=38.8
Q ss_pred CCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcEEEEEeeCchHHHHHH
Q 007085 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
-..+++||+||+-..++.++ .+.+..+++..|+...+|++.-.+|+.+.+++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 46789999999997766553 45667777777777788887777787666544
No 289
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.072 Score=58.83 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
..++++||||+|+|.... ...+.++++.-+.+..+|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEEC
Confidence 468899999999985432 2344455555555555555443
No 290
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.63 E-value=0.059 Score=63.63 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=66.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.+++|+||+++-++.+++.+.+.++..++.++++..+..++.+.+. ...+||||| .+....+++.++++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT------dIierGIDIP~v~~ 882 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT------TIIETGIDIPTANT 882 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC------chhhcccccccCCE
Confidence 56899999999999999999999988899999999988776544433 469999999 34455678999999
Q ss_pred EEEccchhc
Q 007085 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||++.++++
T Consensus 883 VIi~~ad~f 891 (1147)
T PRK10689 883 IIIERADHF 891 (1147)
T ss_pred EEEecCCCC
Confidence 999999875
No 291
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.62 E-value=0.11 Score=44.85 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+++.+|+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999744
No 292
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.57 E-value=0.2 Score=56.13 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCC-CCCcEEEEEe
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSA 284 (618)
..+.+|||||+|.+... ....+..++++.. ...+++++..
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEe
Confidence 45678999999998754 2344555555432 2344444333
No 293
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.55 E-value=0.098 Score=50.60 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=36.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+..++|.+++|+|||+.++..+...+.+ +.++++++- .+-..++.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---------ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCcEEEEEe-eCCHHHHHHHHHHh
Confidence 4569999999999998776666655532 556788773 46666777766654
No 294
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.55 E-value=0.056 Score=61.55 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|+|-|++++... ...++|.|..|||||.+...-+...+.... -...++|+++-|+..|..+.+++.+++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35899999999754 457999999999999876555544443211 112469999999999999999998764
No 295
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.55 E-value=0.07 Score=54.19 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=27.0
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
...++|||||+|.+........+..+++..+.++++|+.|.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 35678999999987333244556666777666666665443
No 296
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.51 E-value=0.089 Score=55.50 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=23.7
Q ss_pred CcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
...+|+|||+|++. ......++..+. ...++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~----~~~q~~LL~~le-~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFN----KAQQDALLPHVE-DGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhC----HHHHHHHHHHhh-cCcEEEEEeCCC
Confidence 45689999999973 334444555554 345666666543
No 297
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.51 E-value=0.18 Score=50.56 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=27.3
Q ss_pred CCCcceEEEccchhccCCCcH--HHHHHHHH-HCCCCCcEEEEEeeCchHHH
Q 007085 243 LSEVQFVVLDEADQMLSVGFA--EDVEVILE-RLPQNRQSMMFSATMPPWIR 291 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~--~~~~~il~-~l~~~~~~l~lSAT~~~~~~ 291 (618)
+.++++|||||...-....+. ..+..|+. ++.....+++.|--....+.
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 567889999999854322232 23344544 33345556665555444433
No 298
>PHA00729 NTP-binding motif containing protein
Probab=95.49 E-value=0.18 Score=47.68 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=37.5
Q ss_pred CCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcH----HHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHH
Q 007085 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFA----EDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (618)
Q Consensus 222 ~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~----~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~ 296 (618)
...++.+.+.|...+....-.....+++||||+-.-+.. .|. .....+...+...++++.+...-+..+...+..
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 355666666666655432222234678999994321111 011 112223333444566677766655555555444
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.33 Score=49.59 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=59.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE-cCc-HH-HHHHHHHHHHHhCCCCceEEEEcCCchHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL-APT-RE-LAKQVEKEFHESAPSLDTICVYGGTPISH 213 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil-~Pt-~~-La~q~~~~l~~~~~~~~~~~~~~~~~~~~ 213 (618)
+.+++.+|+|+|||.++.-.+.. +.. .+.++.++ +-+ +. -+.||....... .
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~--------~g~~V~lItaDtyR~gAveQLk~yae~l----g------------ 261 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLK--------QNRTVGFITTDTFRSGAVEQFQGYADKL----D------------ 261 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH--------cCCeEEEEeCCccCccHHHHHHHHhhcC----C------------
Confidence 45789999999999865443332 222 13344444 322 22 233443332221 1
Q ss_pred HHHHhhcCCCE-EEEChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 214 QMRALDYGVDA-VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 214 ~~~~~~~~~~I-lv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
+.+ ++.+|..+.+.+.... ...++++|+||=+=+.... .....+..+...+.+..-++.+|||...
T Consensus 262 --------vpv~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 262 --------VELIVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred --------CCEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 111 2245666655554311 1356789999988764221 1233344444444444445677876554
No 300
>PRK05973 replicative DNA helicase; Provisional
Probab=95.47 E-value=0.11 Score=49.65 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHH---------HHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 104 LDISQDIVAALARRGISKLFPIQK---------AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~---------~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
+++++.+-+.-.+.+|....-... +...-+..+.-++|.+++|+|||+.++..+.+.+.+ +.
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---------Ge 93 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---------GR 93 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---------CC
Confidence 445555554445555543332222 233344455668999999999998666555554422 55
Q ss_pred eEEEEcCcHHHHHHHHHHHHHh
Q 007085 175 LCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+++|+.- .+-.+|+.+++..+
T Consensus 94 ~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 94 TGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred eEEEEEE-eCCHHHHHHHHHHc
Confidence 6777754 34456777777655
No 301
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.45 E-value=0.25 Score=44.59 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=65.1
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH-HHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
+.|..-.|-|||.+++=-++..+ +.+.+|+|+.=.+. -..--...++ .++.+.... .+. ........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---------G~G~rV~ivQFlKg~~~~GE~~~l~-~l~~~~~~~-~g~-~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---------GHGMRVLIVQFLKGGRYSGELKALK-KLPNVEIER-FGK-GFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---------CTT--EEEEESS--SS--HHHHHHG-GGT--EEEE---T-T----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---------hCCCEEEEEEEecCCCCcCHHHHHH-hCCeEEEEE-cCC-cccccCCC
Confidence 55667789999998877777665 44778998875554 1111122222 233322221 111 10000000
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcEEEEEeeCchHHHHHH
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
.. .+ .......++... ..+.-..+++||+||+-..++.++ ...+..+++..+....+|++--.+|+.+.+.+
T Consensus 74 ~~--~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 74 EE--ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp HH--HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred cH--HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 00 00 001111122222 223456799999999997766654 46677777777777888887777887666654
No 302
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.13 Score=54.51 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=35.6
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHc---CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 94 SKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
...+..+|++++--.++...|+.. .+. +|-+.+++-. ..-..+|+++|+|||||+.+
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK--~pd~~k~lGi-~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIK--RPDLFKALGI-DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhcc--CHHHHHHhCC-CCCCceEEeCCCCccHHHHH
Confidence 345677788887777777666542 222 3333333321 12356999999999999844
No 303
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.1 Score=56.87 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
...++++||||+|+|.... ...+.+.++.-+.++.+|+.|--+
T Consensus 122 ~gr~KViIIDEah~Ls~~A-aNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA-FNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred cCCceEEEEEChHhcCHHH-HHHHHHhhccCCCCceEEEEeCCh
Confidence 3468899999999985432 233334444444556666655443
No 304
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.42 E-value=0.14 Score=54.37 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (618)
+.-++|.+++|+|||...+..+.. +.+ .+.+++++.- .+-..|+......+........+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~-~a~--------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~l~~~~e------- 142 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAAR-LAA--------AGGKVLYVSG-EESASQIKLRAERLGLPSDNLYLLAE------- 142 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HHh--------cCCeEEEEEc-cccHHHHHHHHHHcCCChhcEEEeCC-------
Confidence 355899999999999855444333 322 1457888875 45566776666554321111111100
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
...+.+...+.. .+.++||||+++.+..
T Consensus 143 -----------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 -----------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred -----------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 122334444332 3578999999997754
No 305
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.39 E-value=0.062 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~ 163 (618)
+||.+|||||||.+ +.+|+.++.+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 89999999999974 5778887765
No 306
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.38 E-value=0.24 Score=44.69 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=32.4
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHH
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
...+++||||||.|... ....+.+.++.-+.+..+|++|..+..-+.+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHH
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChHHH
Confidence 46889999999998543 45566666777677777777776665433333
No 307
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.38 E-value=0.13 Score=55.00 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH----HHhCCCCceEEEEcCCchH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF----HESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l----~~~~~~~~~~~~~~~~~~~ 212 (618)
+-.+..-|--.|||. ++.|++..++.. -.+-++.++++-+..++-+++++ .+|++.-.+....++.-..
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~ 275 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISI 275 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEE
Confidence 456778899999996 778888887762 23678999999998888877765 4566533322111110000
Q ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC-CCCcEEEEEeeC
Q 007085 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATM 286 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~ 286 (618)
.. ...+..++++| ........=+++++++|||||-+ -...+..++-.+. +++++|..|.|-
T Consensus 276 s~---pg~Kst~~fas------c~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 276 DH---RGAKSTALFAS------CYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ec---CCCcceeeehh------hccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCCC
Confidence 00 00111223332 22333344578999999999976 3455666666554 578888888773
No 308
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.36 E-value=0.25 Score=52.10 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=80.9
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh
Q 007085 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219 (618)
Q Consensus 140 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (618)
+-+--+.+||+..-++++.+.+.. +-.|.+||.+-+.+-|.|+++++. .++++++.++++..+..++.+.+.
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~-------g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVAS-------GFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhc-------cCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHH
Confidence 334456899999888888877755 346789999999999999999997 678899999999877766655444
Q ss_pred ----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 220 ----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 220 ----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
....++||| +.+.+ .+++..+.+||.++.-.
T Consensus 433 ~FR~g~IwvLicT-----dll~R-GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLAR-GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHhccCeeEEEeh-----hhhhc-cccccCcceEEecCCCc
Confidence 358999999 55554 47899999999866553
No 309
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.34 E-value=0.14 Score=54.18 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=59.3
Q ss_pred CCCCHHH-HHHHHHcCCCCChH----HHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 104 LDISQDI-VAALARRGISKLFP----IQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 104 ~~l~~~l-~~~l~~~~~~~l~~----~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
....+++ ...|++..-.+++. +|++-=+.|... +-++|++..|||||.+++-=+.-.+..+.... ....+
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l---~~k~v 263 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL---QAKPV 263 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc---ccCce
Confidence 3444444 44566554444443 565555555544 34899999999999988766655555544332 23449
Q ss_pred EEEcCcHHHHHHHHHHHHHhC
Q 007085 177 LVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~ 197 (618)
||+.|++.++.=+.+.|-.+.
T Consensus 264 lvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhc
Confidence 999999999887777666554
No 310
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.32 E-value=0.071 Score=49.59 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=26.8
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
-+.+.||+||||.|.+- ....++..++...+.+++.+-.-+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 56789999999998653 445566666666555555444333
No 311
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.32 E-value=0.092 Score=54.09 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.3
Q ss_pred CcceEEEccchhccCC-CcHHHHHHHHHHCCCC-CcEEEEEeeCchHHH
Q 007085 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQN-RQSMMFSATMPPWIR 291 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~-~~~l~lSAT~~~~~~ 291 (618)
++++++||.++.+... ...+.+-.+++.+..+ .|+|+.|-.+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999987654 2456666667766544 367777766666544
No 312
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.28 E-value=0.14 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
.+++|.+++|+|||.+. ..++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 56999999999999743 4444444
No 313
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.28 E-value=0.091 Score=59.16 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCcchHH-HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEc
Q 007085 327 MYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (618)
Q Consensus 327 ~~~~~~~-l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT 400 (618)
-..|... +..++.....+.+++|.+|++.-+...++.+.+ .+++..+||+++..+|.++++.+.+|+.+|+|+|
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT 371 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGT 371 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEch
Confidence 3444433 333444445677999999999999988887754 3678999999999999999999999999999999
Q ss_pred Cc-cccCCCCCCccEEEEcCCC
Q 007085 401 DV-AARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 401 ~~-~~~GlDi~~~~~VI~~~~p 421 (618)
.. +...+.+.++.+||+-...
T Consensus 372 ~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 372 HALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred HHHhcccchhcccceEEEechh
Confidence 74 4455778888888864443
No 314
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.27 E-value=0.11 Score=50.36 Aligned_cols=39 Identities=23% Similarity=0.081 Sum_probs=26.2
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007085 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (618)
..+.-++|.|++|+|||..++..++..+.+ .+..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEe
Confidence 345568999999999997655444444432 145677777
No 315
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.25 E-value=0.2 Score=53.03 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=56.9
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCCch
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPI 211 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~~~ 211 (618)
+..+.-++|.|.+|+|||..++..+.....+ .+..++++.. ..-..|+..++......+....+ .+....
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fSl-Em~~~~l~~Rl~~~~~~v~~~~~~~~~l~~ 261 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFSL-EMSAEQLGERLLASKSGINTGNIRTGRFND 261 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEEC-CCCHHHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 3334558999999999997554444333222 1445777762 33444444444332222221111 112221
Q ss_pred HHHH------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 212 SHQM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 212 ~~~~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
.++. ..+. ..++.|. |.+.+...+.+-......+++||||=.|.+..
T Consensus 262 ~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 262 SDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 2111 1122 2344553 44455444432221223688999999887753
No 316
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.24 E-value=0.19 Score=49.45 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
.++++.+|+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998653
No 317
>PRK04195 replication factor C large subunit; Provisional
Probab=95.24 E-value=0.15 Score=54.94 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+|+.+|+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999754
No 318
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.24 E-value=0.045 Score=51.27 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
++|+.+|+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999844
No 319
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.23 E-value=0.22 Score=48.97 Aligned_cols=28 Identities=29% Similarity=0.188 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCEEEEccCCChhHHHHH
Q 007085 127 KAVLEPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 127 ~~~i~~i~~~~~~li~~~tGsGKT~~~l 154 (618)
++++..+..+.++++.+++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3445556678899999999999998653
No 320
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.058 Score=58.11 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=25.2
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..++++||||+|+|.... ...+.+.++..++.+.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 468899999999885432 233445555555566666544
No 321
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.23 Score=52.89 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.9
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~ 155 (618)
+.+|+.+|.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 4699999999999986643
No 322
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.14 E-value=0.22 Score=51.35 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (618)
+.-++|.+++|+|||..++..+. .+.+ .+.+++++.-. +-..|+.....++.-......+...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~-~~a~--------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l~l~~e------- 144 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA-RLAK--------RGGKVLYVSGE-ESPEQIKLRADRLGISTENLYLLAE------- 144 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH-HHHh--------cCCeEEEEECC-cCHHHHHHHHHHcCCCcccEEEEcc-------
Confidence 35589999999999985543333 3322 13568887653 4456666555544211111111100
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
.+.+.+.+.+.. .+.++||||+++.+.
T Consensus 145 -----------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -----------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 122444444432 357899999999874
No 323
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.095 Score=52.55 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=33.9
Q ss_pred CCCCccCCCCCHHHHHHHHHc----CCC-CCh---------HHHHHHH------HHHhCC-----CCEEEEccCCChhHH
Q 007085 97 EGLDISKLDISQDIVAALARR----GIS-KLF---------PIQKAVL------EPAMQG-----RDMIGRARTGTGKTL 151 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~----~~~-~l~---------~~Q~~~i------~~i~~~-----~~~li~~~tGsGKT~ 151 (618)
....|+.++....|.+.|+.. ++. +.. ..-++|+ |...++ +.+|+.+|+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 344577788888888888652 111 111 1112221 233333 569999999999998
Q ss_pred HH
Q 007085 152 AF 153 (618)
Q Consensus 152 ~~ 153 (618)
.+
T Consensus 261 LA 262 (491)
T KOG0738|consen 261 LA 262 (491)
T ss_pred HH
Confidence 43
No 324
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.12 E-value=0.032 Score=60.91 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH-HHHHh
Q 007085 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK-EFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~-~l~~~ 196 (618)
..+|||.+.++.+... +.+.+..++-+|||.+.+..+...+.. ....+|++.||..+|.++.+ +|..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5789999999998875 468999999999999655444433322 23469999999999999874 44443
No 325
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.026 Score=59.43 Aligned_cols=17 Identities=29% Similarity=0.159 Sum_probs=14.6
Q ss_pred CEEEEccCCChhHHHHH
Q 007085 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l 154 (618)
.+|+.+|.|+|||.++.
T Consensus 42 a~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 42 AYIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998664
No 326
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.05 E-value=0.33 Score=55.87 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=103.4
Q ss_pred HHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHH--HHhh----------------------hcCCCCCCeEEEEc
Q 007085 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII--KFNE----------------------KHGRGRNPLCLVLA 180 (618)
Q Consensus 125 ~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~--~~~~----------------------~~~~~~~~~~lil~ 180 (618)
-|++-+..+..+-|+|--..|=-=.|+-.-+.-+..+. ..++ ...-..+.++.+|+
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 48888888888888888888877777644333111111 0000 00112378999999
Q ss_pred CcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 181 Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
|..+-..+..+.++++.|..++.+.||.....+..+. .+..+|||||| -+-...+++.+...|||+-||+
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T------TIIEtGIDIPnANTiIIe~AD~ 884 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT------TIIETGIDIPNANTIIIERADK 884 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe------eeeecCcCCCCCceEEEecccc
Confidence 9999999999999999999999999999886655443 33569999999 4555677899999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCC
Q 007085 257 MLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~ 275 (618)
+ -..++..+--+...
T Consensus 885 f----GLsQLyQLRGRVGR 899 (1139)
T COG1197 885 F----GLAQLYQLRGRVGR 899 (1139)
T ss_pred c----cHHHHHHhccccCC
Confidence 7 45677777666643
No 327
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.05 E-value=0.16 Score=51.56 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHhCC-----CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 122 LFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~-----~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
++|+|...+..+..- +-.|+.+|.|.||+..+. .+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~-~~A~~L 45 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ-HLAQGL 45 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH-HHHHHH
Confidence 367777777766542 347899999999998663 333343
No 328
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.15 Score=51.30 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=26.9
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
-...+++|||+||+|... ....+.++++.-+++..+|++|..+
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 346789999999998543 3444555555545555555555443
No 329
>PRK06904 replicative DNA helicase; Validated
Probab=95.01 E-value=0.32 Score=51.96 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=60.2
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcC--CchH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG--TPIS 212 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~--~~~~ 212 (618)
.+.=++|.|.+|.|||..+ +-++..+... .+..++|++. .--..|+..++......+....+..+ .+..
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~~-------~g~~Vl~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAMA-------SEKPVLVFSL-EMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHh-------cCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHhccCCCCCHH
Confidence 3344788999999999755 3333333221 1345666654 45566666666544333332222222 2222
Q ss_pred HHH------HHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 213 HQM------RALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 213 ~~~------~~~~~~~~Ilv-----~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
.+. ..+....++.| .|+..+...+.+.......+++||||=.|.+..
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 221 12222344555 355666544433211123588999999987753
No 330
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.95 E-value=0.17 Score=56.26 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=74.3
Q ss_pred CcchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHhcC---CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcc
Q 007085 328 YEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSY---NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 328 ~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
..|.+.+.+++++. ..++++||.++.+..+..+.+.|.+.+ .+..+|+.++..+|.+......+|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35777777777654 457899999999999999999998765 48889999999999999999999999999999653
Q ss_pred ccCCCCCCccEEEEcCC
Q 007085 404 ARGLDVPNVDLIIHYEL 420 (618)
Q Consensus 404 ~~GlDi~~~~~VI~~~~ 420 (618)
- =+-+++...||..+.
T Consensus 251 v-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 251 V-FAPVEDLGLVAIWDD 266 (665)
T ss_pred E-EeccCCCCEEEEEcC
Confidence 3 245667777776544
No 331
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=94.91 E-value=0.16 Score=50.02 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=62.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH-HHHHHhhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS-HQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
+..+||.+|+.+..+|.++.+++.++...+..++..+... +....+.+ ..+|||+| ..|+ +.+.+.++++.|
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILE-RGVTfp~vdV~V 378 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILE-RGVTFPNVDVFV 378 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhh-cccccccceEEE
Confidence 5679999999999999999999988888877777665533 33333444 48999999 4444 456799999999
Q ss_pred EccchhccC
Q 007085 251 LDEADQMLS 259 (618)
Q Consensus 251 iDEaH~~~~ 259 (618)
++--|++..
T Consensus 379 lgaeh~vfT 387 (441)
T COG4098 379 LGAEHRVFT 387 (441)
T ss_pred ecCCccccc
Confidence 999998754
No 332
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.88 E-value=0.18 Score=56.73 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=69.9
Q ss_pred cchHHHHHHHH-HhhcCCcEEEEecchhHHHHHHHHHHhc--CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcccc
Q 007085 329 EKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 329 ~~~~~l~~~l~-~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
.|......++. ....+.++||.+|++..+..+++.|.+. ..+..+|++++..+|.++...+.+++.+|+|+|...-
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal- 252 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL- 252 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-
Confidence 44444433333 2345678999999999999999999764 5688999999999999999999999999999997432
Q ss_pred CCCCCCccEEEEcCC
Q 007085 406 GLDVPNVDLIIHYEL 420 (618)
Q Consensus 406 GlDi~~~~~VI~~~~ 420 (618)
-+.+.++.+||..+.
T Consensus 253 ~~p~~~l~liVvDEe 267 (679)
T PRK05580 253 FLPFKNLGLIIVDEE 267 (679)
T ss_pred cccccCCCEEEEECC
Confidence 256677888876554
No 333
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.88 E-value=0.33 Score=43.96 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=75.2
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcC------CchH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG------TPIS 212 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~------~~~~ 212 (618)
+.|.--.|-|||.+++=-++..+ +.+.+|+|+.=.+--...=...+.+.++.+.... .+. ....
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa---------G~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~-~g~~~~~~~~~~~ 93 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA---------GQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVR-CDLPRCLDTPHLD 93 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh---------cCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEE-CCCCCeeeCCCcC
Confidence 66677789999998887777665 4578888886333221111112222333332221 111 0100
Q ss_pred -HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcEEEEEeeCchH
Q 007085 213 -HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPW 289 (618)
Q Consensus 213 -~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~ 289 (618)
.... .....++... ..+.-..+++||+||+-...+.++ .+.+..+++..|+...+|++--.+|++
T Consensus 94 ~~~~~-----------~~~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~ 161 (178)
T PRK07414 94 ESEKK-----------ALQELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPES 161 (178)
T ss_pred HHHHH-----------HHHHHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 0000 0111122221 122346789999999997776654 466777778777788888877778886
Q ss_pred HHHHH
Q 007085 290 IRSLT 294 (618)
Q Consensus 290 ~~~~~ 294 (618)
+.+++
T Consensus 162 Lie~A 166 (178)
T PRK07414 162 LLAIA 166 (178)
T ss_pred HHHhC
Confidence 66543
No 334
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.88 E-value=0.073 Score=56.88 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+|+.+|+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 357999999999999843
No 335
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.49 Score=48.70 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=20.2
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCC
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
...-+||+||++.+..... ..+..++....
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~ 151 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPG 151 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhcc
Confidence 3455799999999987643 55555555543
No 336
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.79 E-value=0.6 Score=46.01 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCCcceEEEccchhccCC-CcHHHHHHHHHHCC------CCCcEEEEEeeCchHHHHHHHHhc
Q 007085 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLP------QNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~------~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
..++++||||=+-+.... .....+.++.+..+ ++-.+++++||........+..+.
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 356889999988765321 12344555555544 566688999997655444444443
No 337
>CHL00181 cbbX CbbX; Provisional
Probab=94.73 E-value=0.47 Score=47.21 Aligned_cols=20 Identities=35% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCCEEEEccCCChhHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~ 155 (618)
+.++++.+|+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35689999999999986643
No 338
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.73 E-value=0.16 Score=56.61 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=40.0
Q ss_pred EEChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchH-HHHHHHHh
Q 007085 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRSLTNKY 297 (618)
Q Consensus 226 v~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~-~~~~~~~~ 297 (618)
+.+|..+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...+++++||.... +.+.+..|
T Consensus 248 ~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 248 VKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred cCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 3467777666654 456789999988865322 12233333333344556788899997543 34444444
No 339
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.051 Score=52.99 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=19.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~ 163 (618)
..|+++.+|||||||+.+. .|+.+++
T Consensus 97 KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 3579999999999998543 4444443
No 340
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.73 E-value=0.22 Score=47.80 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=30.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+..++|.+++|+|||..++..+...+.+ +..++++.- .+...++.+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 35679999999999998655444433322 345666664 3444555444433
No 341
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.72 E-value=0.12 Score=51.03 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHh----CCC-CEEEEccCCChhHHHH
Q 007085 122 LFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAF 153 (618)
Q Consensus 122 l~~~Q~~~i~~i~----~~~-~~li~~~tGsGKT~~~ 153 (618)
+++.+.+++..+. .+. .+++.+++|+|||..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 5666666766543 223 4889999999999744
No 342
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.70 E-value=0.18 Score=54.56 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHhc--CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccc
Q 007085 328 YEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 328 ~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
..|......++.. ...+.++||.+|++..+..+++.|.+. ..+..+|+.++..+|.++.....+++.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 3455554444433 345678999999999999999999765 4688999999999999999999999999999997533
Q ss_pred cCCCCCCccEEEEcCC
Q 007085 405 RGLDVPNVDLIIHYEL 420 (618)
Q Consensus 405 ~GlDi~~~~~VI~~~~ 420 (618)
. +.+.++..||..+.
T Consensus 88 f-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 88 F-LPFKNLGLIIVDEE 102 (505)
T ss_pred c-CcccCCCEEEEECC
Confidence 2 45677887776543
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.66 E-value=0.61 Score=48.76 Aligned_cols=54 Identities=6% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..+++||||=+-++-.. ..-..+..+.....+...+++++||........+..|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 45788999888764321 1334455555555666678888998765544444444
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.64 E-value=0.11 Score=57.46 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=74.0
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH------HHHHHHHHHHHHhCCCCceEEEEcCCc
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR------ELAKQVEKEFHESAPSLDTICVYGGTP 210 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~------~La~q~~~~l~~~~~~~~~~~~~~~~~ 210 (618)
+-++|.+|.|+|||........ .. .++..+.++.--. -.+......+.+..|... +..
T Consensus 38 RL~li~APAGfGKttl~aq~~~--~~--------~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~------~~a 101 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRE--LA--------ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLG------DEA 101 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHH--hc--------CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcccc------HHH
Confidence 4489999999999974322221 11 1244566665321 233344444444433211 111
Q ss_pred hHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 211 ~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
+ ....+. . ...-..+++.+..+.-...+.-++|+|+.|++.+......++.+++..|++.+.++.|-+-|+
T Consensus 102 ---~-~l~q~~--~-~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 102 ---Q-TLLQKH--Q-YVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ---H-HHHHhc--c-cccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 1 111111 0 112223333333222224444689999999999988889999999999999999999888653
No 345
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.13 Score=51.90 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=28.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCC--hHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 99 LDISKLDISQDIVAALARRGISKL--FPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l--~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+|+..-|++.|.+.+...-+.+- ..+|. --+|++..+|+|+|||+++
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a-------pfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQA-------PFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccc-------hhhheeeeCCCCCCchHHH
Confidence 346677778877766653211100 00000 0158999999999999854
No 346
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.63 E-value=0.26 Score=52.92 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.8
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~ 155 (618)
+.+|+++|.|+|||.++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999986643
No 347
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.61 E-value=0.22 Score=51.46 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007085 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
.+++.+++ .+..+-..|.++.-..-.+.. .|.+=.|||||.+..+-+. .+.. ..+..+++|.+-|+.|+.+
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~------knPd~~I~~Tfftk~L~s~ 221 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHS------KNPDSRIAFTFFTKILAST 221 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhc------CCCCceEEEEeehHHHHHH
Confidence 34444433 445567778777655555554 6788899999985433322 2211 2346689999999999999
Q ss_pred HHHHHHHhC
Q 007085 189 VEKEFHESA 197 (618)
Q Consensus 189 ~~~~l~~~~ 197 (618)
....+.+++
T Consensus 222 ~r~lv~~F~ 230 (660)
T COG3972 222 MRTLVPEFF 230 (660)
T ss_pred HHHHHHHHH
Confidence 988877765
No 348
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.15 Score=55.64 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..++++||||+|+|... ....+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 46789999999987543 2344555555555555555544
No 349
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.23 Score=54.58 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=26.0
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
....++|||||+|.+... -...+.+.++..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 457889999999998543 2334445555555566666654
No 350
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.59 E-value=0.16 Score=53.74 Aligned_cols=72 Identities=13% Similarity=0.272 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCc
Q 007085 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~ 246 (618)
....++||.|-|+.-|.++...+.... ..+.++||+.+..++...++ ..+.||||| .+..+.+++.++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~--~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT------dVAaRGLDi~dV 410 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG--WPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT------DVAARGLDVPDV 410 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC--cceeeecccccHHHHHHHHHhcccCCcceEEEc------ccccccCCCccc
Confidence 346789999999999999999998753 67899999999888776665 358999999 667778889999
Q ss_pred ceEE
Q 007085 247 QFVV 250 (618)
Q Consensus 247 ~~vV 250 (618)
++||
T Consensus 411 ~lVI 414 (519)
T KOG0331|consen 411 DLVI 414 (519)
T ss_pred cEEE
Confidence 9999
No 351
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.58 E-value=0.44 Score=49.45 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCcceEEEccchhcc-CCCcHHHHHHHHHHCC---CCCcEEEEEeeCch-HHHHHHHHh
Q 007085 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLP---QNRQSMMFSATMPP-WIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~-~~~~~~~~~~il~~l~---~~~~~l~lSAT~~~-~~~~~~~~~ 297 (618)
.++++||||=+-+.. +......+..++.... +...+++++||... .+......|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 567889999766542 1112334444444432 23467889999876 444444433
No 352
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.55 E-value=0.16 Score=56.69 Aligned_cols=94 Identities=14% Similarity=0.241 Sum_probs=72.5
Q ss_pred CcchHH-HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC
Q 007085 328 YEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (618)
Q Consensus 328 ~~~~~~-l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~ 401 (618)
.-|... +..++.....+.+++|.+|++.-++.+++.+.+ .+++..+||+++..+|..+++.+.+++.+|+|+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 344433 333444555677999999999999988887754 36789999999999999999999999999999997
Q ss_pred cc-ccCCCCCCccEEEEcCCC
Q 007085 402 VA-ARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 402 ~~-~~GlDi~~~~~VI~~~~p 421 (618)
.+ ...+++.++.+||+-...
T Consensus 347 ~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 347 ALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred HHHhccccccccceEEEechh
Confidence 54 445777888888864443
No 353
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.55 E-value=0.19 Score=55.26 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
....++|||||+|.+... ....+.+.++..+..+.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 346789999999987432 2334555555555566666554
No 354
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.53 E-value=0.36 Score=48.91 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
...+++|+|++|.+... ....+.++++..+....+|++|-.
T Consensus 112 ~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 112 GGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred CCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEEEEeCC
Confidence 56889999999987443 556666777776655555554443
No 355
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.49 E-value=0.53 Score=46.84 Aligned_cols=19 Identities=32% Similarity=0.153 Sum_probs=15.9
Q ss_pred CCCEEEEccCCChhHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l 154 (618)
..++++.+|+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998663
No 356
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.33 Score=52.19 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=36.1
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHc---CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 94 SKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
...+..+|++++=-+++.+.|+.. ....+-.+.+-. +..-+.+|+.+|+|||||+.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 445677888888777777777542 222222222222 122367999999999999865
No 357
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.2 Score=52.12 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=25.3
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
....+++||||+|+|... ....+.++++.-+++..+|+.|.+
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECC
Confidence 356789999999998543 234455555554445444444444
No 358
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.34 E-value=0.21 Score=48.22 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+.-++|.+++|+|||..++..+...+.+ +.+++++.-. +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---------g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---------GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---------CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 3458999999999998665555544322 5567777653 3345566665554
No 359
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.18 Score=52.13 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=22.6
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
.+.+++||||+|.+.... ...+.+.++..+....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 467899999999985321 223344444444445555543
No 360
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.29 E-value=0.56 Score=48.16 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHH
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
.....+|++||.|.. +..-...+..++..+ ....-+|++|-++|.++
T Consensus 125 ~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 125 AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 345668999999942 333345556666554 45667788888887653
No 361
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.12 Score=56.33 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+.+++||||+|+|... -...+.+.++..+....+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 357889999999998543 2334445555545555555555
No 362
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.28 E-value=0.13 Score=50.41 Aligned_cols=137 Identities=18% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc---HHHHHHHHHHHHHhCCCCceEEEEcCC-ch
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT---RELAKQVEKEFHESAPSLDTICVYGGT-PI 211 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt---~~La~q~~~~l~~~~~~~~~~~~~~~~-~~ 211 (618)
+.-++|.|.+|.|||..++-.+...+.+ .+..+++++.- .+++..+..... .+...-+..+. ..
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlEm~~~~l~~R~la~~s----~v~~~~i~~g~l~~ 86 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLEMSEEELAARLLARLS----GVPYNKIRSGDLSD 86 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESSS-HHHHHHHHHHHHH----TSTHHHHHCCGCHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCCCCHHHHHHHHHHHhh----cchhhhhhccccCH
Confidence 3458999999999998665555554433 13568888752 334333333322 12111111111 11
Q ss_pred HHHH------HHhhcCCCEEE-E----ChHHHHHHHHhcCCCCCCcceEEEccchhccCC----CcHHHHHHHHHHCC--
Q 007085 212 SHQM------RALDYGVDAVV-G----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-- 274 (618)
Q Consensus 212 ~~~~------~~~~~~~~Ilv-~----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~----~~~~~~~~il~~l~-- 274 (618)
.+.. ..+.. ..+.| . |++.|...+..-......+++||||=.|.+... .....+..+...++
T Consensus 87 ~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~l 165 (259)
T PF03796_consen 87 EEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKAL 165 (259)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1111 11222 22333 3 445565555433222367899999999988663 23444555544442
Q ss_pred ---CCCcEEEEEee
Q 007085 275 ---QNRQSMMFSAT 285 (618)
Q Consensus 275 ---~~~~~l~lSAT 285 (618)
.++.+|++|..
T Consensus 166 A~~~~i~vi~~sQl 179 (259)
T PF03796_consen 166 AKELNIPVIALSQL 179 (259)
T ss_dssp HHHHTSEEEEEEEB
T ss_pred HHHcCCeEEEcccc
Confidence 25566666654
No 363
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.27 E-value=0.66 Score=42.27 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=29.9
Q ss_pred CCcceEEEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
.+.++||+|....... ......+..+.....+...++.+.|+-..........+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 4677899999986421 11233333444433455566777776555444444444
No 364
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.1 Score=58.75 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
..++++||||+|+|... ....+.++++.-+..+.+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46789999999998432 223344444444445555554
No 365
>PRK06620 hypothetical protein; Validated
Probab=94.24 E-value=0.12 Score=48.88 Aligned_cols=40 Identities=3% Similarity=0.218 Sum_probs=23.5
Q ss_pred CcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee-Cch
Q 007085 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT-MPP 288 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT-~~~ 288 (618)
..++++|||+|.+. ...+..+++.+...-..+++|+| +|+
T Consensus 85 ~~d~lliDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~ 125 (214)
T PRK06620 85 KYNAFIIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSR 125 (214)
T ss_pred cCCEEEEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCcc
Confidence 34679999999642 23455666655444344555555 444
No 366
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.58 Score=46.73 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
-+.+|+.+|+|+|||+.+
T Consensus 185 PKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 367999999999999854
No 367
>PHA00350 putative assembly protein
Probab=94.18 E-value=0.32 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.0
Q ss_pred EEEEccCCChhHHHHHHH-HHHHH
Q 007085 139 MIGRARTGTGKTLAFGIP-ILDKI 161 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~-~l~~l 161 (618)
.++.+..|||||+.++.- ++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 578999999999977653 44343
No 368
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.18 E-value=0.15 Score=51.30 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
....+++|||+||+|... ....+.+.++.-+++..+|++|..+.
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHNQK 149 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECChh
Confidence 456899999999998533 34455555555555555666655543
No 369
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.16 E-value=0.15 Score=51.78 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=26.9
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
....+++|||+||+|... ....+.++++.-+.+..+|++|.-+
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 357899999999998433 3444555555544455555555543
No 370
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.14 E-value=0.39 Score=43.41 Aligned_cols=54 Identities=24% Similarity=0.418 Sum_probs=39.2
Q ss_pred CCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHH
Q 007085 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~ 296 (618)
-..+++||+||.-..+..++ .+.+..++..-|....+|++--..|+.+.+++..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 34699999999997665543 4566777777777778888777788877666543
No 371
>PRK08840 replicative DNA helicase; Provisional
Probab=94.10 E-value=0.66 Score=49.49 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=58.9
Q ss_pred HHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-Ec
Q 007085 129 VLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YG 207 (618)
Q Consensus 129 ~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~ 207 (618)
.+.-+..+.-++|.|.+|.|||..++-.+.....+ .+..++|+.. .--..|+..++......+....+ .+
T Consensus 210 ~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~ 280 (464)
T PRK08840 210 KTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFSL-EMPAEQLMMRMLASLSRVDQTKIRTG 280 (464)
T ss_pred hhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHHhcC
Confidence 33333344558889999999997554333333222 1345666653 34455666555443222222111 12
Q ss_pred CCchHHHHH------HhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 208 GTPISHQMR------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 208 ~~~~~~~~~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
..+..++.+ .+....++.|- |...+...+.+-......+++||||=.|.+.
T Consensus 281 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 281 QLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 222222211 22122344443 3445544333222112358899999999874
No 372
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.04 E-value=0.061 Score=58.27 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHhCCCC----------EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAMQGRD----------MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~----------~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
.+...|.+++-.+++.+. .||-...|-||-.+..-.|++..++ ...++|++.-+..|-....
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccchh
Q ss_pred HHHHHhCCCCceEEEEcCCchHHHHHHhhcC--CCEEEEChHHHH---------------HHHHhcCCCCCCcceEEEcc
Q 007085 191 KEFHESAPSLDTICVYGGTPISHQMRALDYG--VDAVVGTPGRVI---------------DLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Ilv~T~~~l~---------------~~l~~~~~~~~~~~~vViDE 253 (618)
+.|....-.--.+.......+.......+.. -.|+++|+..|. .++..-.-.+.-+ ||+||
T Consensus 336 RDL~DigA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGv--IvfDE 413 (1300)
T KOG1513|consen 336 RDLRDIGATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGV--IVFDE 413 (1300)
T ss_pred hchhhcCCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcccee--EEehh
Q ss_pred chhccC---------CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHH
Q 007085 254 ADQMLS---------VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 254 aH~~~~---------~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
||+-.+ ...+..+..+-..|| +.++|.-|||=..+.++++
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMa 462 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMA 462 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhh
No 373
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.01 E-value=0.29 Score=53.93 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
..++++||||+|+|... -...+.++++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 46889999999998543 233344445544444555554
No 374
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.99 E-value=0.3 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=18.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
.+++|.+|+|+|||.++ ..++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999754 44555543
No 375
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.093 Score=57.23 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.6
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~ 155 (618)
+.+|+.+|.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999987643
No 376
>PRK07004 replicative DNA helicase; Provisional
Probab=93.95 E-value=0.32 Score=51.89 Aligned_cols=113 Identities=15% Similarity=0.060 Sum_probs=55.9
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~~~~~~ 214 (618)
+.-++|.|.+|+|||..++-.+.....+ .+..++++.. ..-..|+..++......+....+ .+..+..++
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fSl-EM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~ 283 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFSM-EMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDW 283 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEeC-CCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHH
Confidence 3448899999999997554443333222 1345666643 34445555555332222221111 122222222
Q ss_pred H------HHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 215 M------RALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 215 ~------~~~~~~~~Ilv-----~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
. ..+. ...+.| .|+..+....++-......+++||||=.|.+.
T Consensus 284 ~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 284 PKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 1 1222 244555 34555544333321112357899999999875
No 377
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.95 E-value=0.19 Score=51.80 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
....++|||||+|.+... ....+.++++..+....+|++|..+.
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCch
Confidence 356789999999987432 34455555565555565666555543
No 378
>PRK08506 replicative DNA helicase; Provisional
Probab=93.92 E-value=0.5 Score=50.62 Aligned_cols=112 Identities=17% Similarity=0.086 Sum_probs=57.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~~~~~~ 214 (618)
+.-++|.|.+|.|||..++-.+... .+ .+..++|++. ..-..|+..++......+....+ .+..+...+
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~-~~--------~g~~V~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~ 261 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKA-LN--------QDKGVAFFSL-EMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEW 261 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHH-Hh--------cCCcEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence 3448999999999997555444433 22 1445666653 45556666665443222221111 122222222
Q ss_pred H------HHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 215 M------RALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 215 ~------~~~~~~~~Ilv-----~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
. ..+.. ..+.| .|+..+...+++-......+++||||=.+.+.
T Consensus 262 ~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 262 ERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1 12222 23444 24555654444321112358899999999775
No 379
>PRK05748 replicative DNA helicase; Provisional
Probab=93.90 E-value=0.52 Score=50.35 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=57.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~~~~~~ 214 (618)
+.-++|.|.+|.|||..++-.+.....+ .+..++++.. ..-..|+..++......+....+ .+.....++
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~--------~g~~v~~fSl-Ems~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATK--------TDKNVAIFSL-EMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDW 273 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHh--------CCCeEEEEeC-CCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 3458999999999997554444333222 1344666543 45556666665433222222111 122222222
Q ss_pred H------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 215 ~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
. ..+. ..++.|. |++.+...+.+-......+++||||=.|.+.
T Consensus 274 ~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 274 PKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1 1122 2344442 4555554443321111268899999999874
No 380
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.88 E-value=0.46 Score=45.22 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.6
Q ss_pred HhCCC-CEEEEccCCChhHHHHHHHHHHHH
Q 007085 133 AMQGR-DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 133 i~~~~-~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+..++ -+.++++.|||||+..- ++++..
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 33444 58899999999998665 444443
No 381
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.87 E-value=0.61 Score=47.28 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++|||||+|.+... ....+..+++..+....+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999987432 2344555566555566555544
No 382
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.78 E-value=0.33 Score=55.42 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=29.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+.+++.|...-.. +..++ +.+.. +...+.+|+.+|+|||||+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~-~~~~~-~~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEW-PLKHP-EIFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHh-hhhCH-HHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 344566666666666666442111 00111 11111 122356999999999999844
No 383
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=93.72 E-value=0.14 Score=52.79 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCCcce-EEEccchhccCCC---cHHHHHHHHHHCCC-CCcEEEEEeeCch
Q 007085 243 LSEVQF-VVLDEADQMLSVG---FAEDVEVILERLPQ-NRQSMMFSATMPP 288 (618)
Q Consensus 243 ~~~~~~-vViDEaH~~~~~~---~~~~~~~il~~l~~-~~~~l~lSAT~~~ 288 (618)
+...++ ++|||||.+++.. +.+.++.+++.++. .+-+.++|-+|.+
T Consensus 252 ~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~D 302 (502)
T PF05872_consen 252 LDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTD 302 (502)
T ss_pred CCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCC
Confidence 445565 5599999987654 45667777777653 4567777777643
No 384
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.72 E-value=0.49 Score=48.09 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
..+++||||||+.|... ....+.+.++.-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 57899999999998542 33444444444455555555443
No 385
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.71 E-value=0.19 Score=50.55 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=40.5
Q ss_pred HHHcCCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 114 LARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+.+.+. +++.|.+.+..+. ...++||+++||||||. ++-+++..+.+. ....+++.+=.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~------~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVAS------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcC------CCCceEEEecCCccc
Confidence 334444 5677777766544 56789999999999996 445666555321 113466776666666
No 386
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.17 Score=52.85 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCCCCCccCCC---CCHHHHHHHHHcC---CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 94 SKDEGLDISKLD---ISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 94 ~~~~~~~~~~~~---l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
...+..+|++++ +..+.-+.+++.- .+.|--+-+-.++ .-+.+|+.+|+|+|||+.+
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHHH
Confidence 346777888885 6777777665432 1212212222221 1255999999999999854
No 387
>PRK04328 hypothetical protein; Provisional
Probab=93.67 E-value=0.21 Score=48.67 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+..++|.+++|+|||..++..+.+.+.+ +.+++++. +.+-..++.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 4568999999999998666555555433 45677776 344555566655554
No 388
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.66 E-value=0.086 Score=50.59 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc------eEEEEcCC
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD------TICVYGGT 209 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~------~~~~~~~~ 209 (618)
+..++|.+++|+|||+.++..+.+.+.+. +.++++++- .+-..++.+.+..+..++. ...+....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 45699999999999987666666555431 235777764 4555777777765532111 01111111
Q ss_pred chHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC----cHHHHHHHHHHCCCCCcEEEEEee
Q 007085 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 210 ~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~----~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
....... -..++.+...+.+..- -...+.||||-...+.... +...+..+...++....+++++++
T Consensus 90 ~~~~~~~---------~~~~~~l~~~i~~~i~-~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 90 PERIGWS---------PNDLEELLSKIREAIE-ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp GGGST-T---------SCCHHHHHHHHHHHHH-HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccccc---------ccCHHHHHHHHHHHHH-hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 1000000 1233344333322110 1123789999998772221 334555566666555556666666
No 389
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.63 E-value=0.21 Score=49.65 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~ 155 (618)
..+++.+|||+|||.+...
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999986543
No 390
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.086 Score=53.56 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
.|+|+.+|||||||+.+. .|+.+++ -|.+|.=|.|
T Consensus 227 SNvLllGPtGsGKTllaq--TLAr~ld---------VPfaIcDcTt 261 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQ--TLARVLD---------VPFAICDCTT 261 (564)
T ss_pred ccEEEECCCCCchhHHHH--HHHHHhC---------CCeEEecccc
Confidence 479999999999998443 4444443 4455555554
No 391
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.63 E-value=0.33 Score=53.30 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.5
Q ss_pred EEEEccCCChhHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGI 155 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~ 155 (618)
+|+.++.|+|||.++.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999986643
No 392
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.62 E-value=0.062 Score=49.21 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=30.5
Q ss_pred HHHhhcCCCEEEEChHHHHHHHHhcCCC--CCCcceEEEccchhccC
Q 007085 215 MRALDYGVDAVVGTPGRVIDLIKRNALN--LSEVQFVVLDEADQMLS 259 (618)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~--~~~~~~vViDEaH~~~~ 259 (618)
.+.....++|||+++..|++......+. ..+-.+|||||||.+.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3445566899999999998655443332 23456899999998754
No 393
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.44 Score=51.33 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=19.1
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCC
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
....++|||||+|.+. ...+..+++.+.
T Consensus 114 ~~~~kVVIIDEad~ls----~~a~naLLk~LE 141 (504)
T PRK14963 114 RGGRKVYILDEAHMMS----KSAFNALLKTLE 141 (504)
T ss_pred cCCCeEEEEECccccC----HHHHHHHHHHHH
Confidence 4578899999999873 344555555553
No 394
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=1.1 Score=42.64 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=30.7
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCC-CChHHHHHHHH-HHhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGIS-KLFPIQKAVLE-PAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~-~l~~~Q~~~i~-~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+..++++.+=..+-++.|...--. -|.| ++-+. -|.--+.+++.+|+|+|||+++
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~p--erfv~lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHP--ERFVNLGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCH--HHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence 3445556666555555555432111 1122 12221 2233467999999999999976
No 395
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.58 E-value=0.59 Score=50.46 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=48.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHhc--------CCeeeecCcCCHHHHHHHHHHHh----cCCccEEEEc--CccccCCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAKS--------YNCEPLHGDISQSQRERTLSAFR----DGRFNILIAT--DVAARGLDV 409 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~lhg~~~~~~r~~i~~~f~----~g~~~vLVaT--~~~~~GlDi 409 (618)
++-+++|+++.+....+.+...+. .+...+-...+ -+.+++.+. .|.-.+|+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 367999999999998888877531 11111222222 234555553 3444455443 678999999
Q ss_pred CC--ccEEEEcCCCC
Q 007085 410 PN--VDLIIHYELPN 422 (618)
Q Consensus 410 ~~--~~~VI~~~~p~ 422 (618)
.| .+.||.+.+|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 87 67888877774
No 396
>PRK08006 replicative DNA helicase; Provisional
Probab=93.56 E-value=0.99 Score=48.25 Aligned_cols=114 Identities=17% Similarity=0.105 Sum_probs=57.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEE-cCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-~~~~~~~~ 214 (618)
+.-++|.|.+|.|||..++-.+.....+ .+..++|+.. .--..|+..++......+....+. +..+..++
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fSl-EM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFSL-EMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEec-cCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 3447889999999997554444333222 1345666653 344555555554433223222121 22222222
Q ss_pred HH------HhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 215 MR------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 215 ~~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
.+ .+....++.|- |+..+....++-......+++||||=.|.+.
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 21 12123345543 4555554443321112358999999999774
No 397
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.45 E-value=0.39 Score=50.20 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999854
No 398
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.45 E-value=0.66 Score=49.39 Aligned_cols=139 Identities=18% Similarity=0.079 Sum_probs=67.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~~~~~~ 214 (618)
+.-++|.|.+|+|||..++-.+...+.+ .+..+++++. ..-..|+.+++.....++....+ .+.....++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~Sl-Em~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSL-EMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHH
Confidence 3458999999999997554444433322 1345666653 34445555555443322221111 122222222
Q ss_pred ------HHHhhcCCCEEE-----EChHHHHHHHHhcCCCCCCcceEEEccchhccCCC----cHHHHHHHHHHCC-----
Q 007085 215 ------MRALDYGVDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP----- 274 (618)
Q Consensus 215 ------~~~~~~~~~Ilv-----~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~----~~~~~~~il~~l~----- 274 (618)
...+.. ..+.| .|.+.+...+.+... -..+++||||=.+.+.... ....+..+...++
T Consensus 266 ~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 266 EKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 112222 23444 245555544433211 1347899999998774321 2233444444432
Q ss_pred CCCcEEEEEee
Q 007085 275 QNRQSMMFSAT 285 (618)
Q Consensus 275 ~~~~~l~lSAT 285 (618)
.++.++++|-.
T Consensus 344 ~~i~vi~lsql 354 (434)
T TIGR00665 344 LNVPVIALSQL 354 (434)
T ss_pred hCCeEEEEecc
Confidence 34555555543
No 399
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.24 Score=53.62 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+.+++||||+|++... ....+.+.++..+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999998543 2344555555555555555554
No 400
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.43 E-value=0.59 Score=52.86 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=26.2
Q ss_pred cceEEEccchhccCCCc----HHHHHHHHHHCCCCCcEEEEEeeCchHH
Q 007085 246 VQFVVLDEADQMLSVGF----AEDVEVILERLPQNRQSMMFSATMPPWI 290 (618)
Q Consensus 246 ~~~vViDEaH~~~~~~~----~~~~~~il~~l~~~~~~l~lSAT~~~~~ 290 (618)
-.+|+|||+|.+...+. ...+..++..+-....+.++.||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 34899999999864331 2334344443333455666667755543
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.40 E-value=2.7 Score=43.94 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchH-HHHHHHHh
Q 007085 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRSLTNKY 297 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~-~~~~~~~~ 297 (618)
+.+.++++||.+=+.-.. .....+..+.....+...+|+++||.... +.+....|
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 567788999987432110 01222222222222345678899997654 44444433
No 402
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.40 E-value=1.2 Score=41.33 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
.....+|||||+|++... ....+.+.++..++...+|++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 456789999999998542 233344444443334444443
No 403
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.4 Score=49.60 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=30.1
Q ss_pred CCcceEEEccchhccCCC--------cHHHHHHHHHHC----CCCCcEEEEEeeC-chHHHHHHHH
Q 007085 244 SEVQFVVLDEADQMLSVG--------FAEDVEVILERL----PQNRQSMMFSATM-PPWIRSLTNK 296 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~--------~~~~~~~il~~l----~~~~~~l~lSAT~-~~~~~~~~~~ 296 (618)
....+++|||+|.++... .....+.++... .++-+++++.||= |.++.+.+..
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 456778899999876431 122223333322 3455889999994 4444444433
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=93.38 E-value=0.75 Score=48.37 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=28.1
Q ss_pred CCcceEEEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..+++||||=+=++.. ......+..+...+.+..-+++++|+...+....+..|
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F 236 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAF 236 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHH
Confidence 3567777777765421 11223344444444455456667776654444444444
No 405
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.38 E-value=0.91 Score=53.46 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=35.2
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
..--+||||++|.+.+......+..++...+++.++|+.|-+.++
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 344579999999986555566788888889989999888887554
No 406
>PRK05636 replicative DNA helicase; Provisional
Probab=93.37 E-value=0.86 Score=49.12 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=52.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEE-cCCchHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQM 215 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 215 (618)
.-++|.|.+|.|||..++-.+.....+ .+..++|+. ...-..|+..++......+....+. +..+..++.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~--------~g~~v~~fS-lEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~ 336 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK--------HNKASVIFS-LEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWE 336 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEE-eeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHH
Confidence 337889999999997555333332222 134566663 2333344444443222122211111 222222221
Q ss_pred H------HhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 216 R------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 ~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
. .+. ...+.|. |...+...+++-.. -..+++||||=.|.|.
T Consensus 337 ~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 337 KLVQRLGKIA-QAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 1 121 2345443 34444433332111 2358899999999875
No 407
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.33 E-value=0.59 Score=47.88 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
...+++|||||+|.|... -...+.++++..+.+..+|++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 346889999999998433 344566666665555666666543
No 408
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.31 E-value=0.14 Score=50.79 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=43.5
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
.+...++.|..-++++.+..=++..+|-|+|||..+...+...+.+ +.-.++|+.=|
T Consensus 125 ~I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~-------~~v~rIiLtRP 181 (348)
T COG1702 125 SIIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA-------GQVRRIILTRP 181 (348)
T ss_pred ceEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh-------cccceeeecCc
Confidence 3566789999999999998778999999999999777776666654 22335666666
No 409
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.30 E-value=0.95 Score=47.24 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=32.9
Q ss_pred CCCCCCccCCCCCHHHHHHHHHc---CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..+...|+++.--+..++.++.. .+..+.-++... +...+.+++.+|+|+|||+.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 34566777776666666666542 112121122111 223467999999999999854
No 410
>PRK08760 replicative DNA helicase; Provisional
Probab=93.26 E-value=0.51 Score=50.56 Aligned_cols=111 Identities=17% Similarity=0.090 Sum_probs=57.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEE-cCCchHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQM 215 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 215 (618)
.-++|.|.+|.|||..++-.+.....+ .+..++|++. ..-..|+..++......+....+. +..+..++.
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~ 300 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFSM-EMSASQLAMRLISSNGRINAQRLRTGALEDEDWA 300 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEec-cCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHH
Confidence 448899999999997554444333222 1334666654 444566766665543333221111 222222221
Q ss_pred ------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 216 ------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 ------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
..+. ...+.|. |++.+...+.+-.. -..+++||||=.+.+.
T Consensus 301 ~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 301 RVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 1222 2344443 45566544433221 2458899999998774
No 411
>PF05729 NACHT: NACHT domain
Probab=93.25 E-value=0.63 Score=41.73 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=16.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
-++|.|+.|+|||..+ .-++..+
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHH
Confidence 3789999999999744 3333333
No 412
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.24 E-value=0.33 Score=48.57 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=40.2
Q ss_pred HHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 112 AALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+.|.+.+. +++.|.+.+.. +...++++|+++||||||. ++.+++..+... ....+++++=.+.|+
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKN------DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhcc------CCCceEEEECCchhh
Confidence 33444443 44555555554 4456789999999999997 445555554321 113467777777676
No 413
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.17 E-value=0.7 Score=49.16 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=54.9
Q ss_pred HHHHHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceE
Q 007085 129 VLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203 (618)
Q Consensus 129 ~i~~i~~-----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~ 203 (618)
-++.++. +.-++|.+++|+|||..++..+. .+.+ .+.+++++.. .+-..|+..+..++.-.....
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~-~~a~--------~g~kvlYvs~-EEs~~qi~~ra~rlg~~~~~l 151 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC-QLAK--------NQMKVLYVSG-EESLQQIKMRAIRLGLPEPNL 151 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH-HHHh--------cCCcEEEEEC-cCCHHHHHHHHHHcCCChHHe
Confidence 4455543 35689999999999985544333 3322 1346888876 455667766655542111111
Q ss_pred EEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
.+.. -.+.+.+...+.. .+.++||||.+..+.
T Consensus 152 ~~~~------------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 152 YVLS------------------ETNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred EEcC------------------CCCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 1110 0233455554443 356789999999764
No 414
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.16 E-value=0.6 Score=50.75 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+++++||||+|+|... -...+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 356789999999988543 1233444444444455555554
No 415
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.13 E-value=1 Score=44.06 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=26.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
+.-++|.+++|+|||..++..+...+.+ +.+++++.-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~---------Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR---------GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC---------CCcEEEEEe
Confidence 3558999999999998666555544322 556788773
No 416
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.77 Score=49.07 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=14.5
Q ss_pred CEEEEccCCChhHHHHH
Q 007085 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l 154 (618)
.+|+.+|+|+|||..+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998664
No 417
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.01 E-value=0.24 Score=49.95 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=42.2
Q ss_pred HHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 111 VAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
++.|.+.+. +++.|.+.+.. +...++++|+++||||||. ++.+++..+... .+..+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 344444454 46777777765 4556889999999999995 555665554220 123467777666665
No 418
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.93 E-value=0.09 Score=50.66 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=11.8
Q ss_pred EEEEccCCChhHH
Q 007085 139 MIGRARTGTGKTL 151 (618)
Q Consensus 139 ~li~~~tGsGKT~ 151 (618)
++|.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999997
No 419
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.89 E-value=0.7 Score=44.17 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=35.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+.-++|.+++|+|||..++..+...+.+ +..++++.. .+-.+++.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~---------g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN---------GEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 4568999999999998665555444422 456777765 355677777776653
No 420
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.78 E-value=0.11 Score=47.49 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=23.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
.++.+||.||||...+. .+..+.. .+.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~-~~~~~~~--------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIR-RIHRYEI--------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHH--------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHHHH-HHHHHHh--------CCCeEEEEEec
Confidence 47889999999975433 3333322 26679999885
No 421
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.71 E-value=0.69 Score=52.80 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=29.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (618)
+..+|+++.-.++.++.+++.-...+ . ..+.+.. +...+.+++.+|+|+|||..+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~-~-~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPM-K-HPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHh-h-CHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 34566666655555555543211000 0 0111111 233467999999999999743
No 422
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=3.6 Score=40.15 Aligned_cols=141 Identities=16% Similarity=0.257 Sum_probs=76.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCC-----CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~-----~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~ 170 (618)
.+...|++..=-+...++|+..-+. |+ -+|.+..++ .+|+.+|+|+||+..+- +... +
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVAT--E------- 189 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVAT--E------- 189 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHh--h-------
Confidence 3444555554444455555543222 11 135566664 48999999999996332 2111 0
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..-+.+-+.+..|+..|.-+-.++.. .|+.+.+. ...+.|.
T Consensus 190 --AnSTFFSvSSSDLvSKWmGESEkLVk--------------------------------nLFemARe-----~kPSIIF 230 (439)
T KOG0739|consen 190 --ANSTFFSVSSSDLVSKWMGESEKLVK--------------------------------NLFEMARE-----NKPSIIF 230 (439)
T ss_pred --cCCceEEeehHHHHHHHhccHHHHHH--------------------------------HHHHHHHh-----cCCcEEE
Confidence 11467777888888888655544310 01122221 2356799
Q ss_pred EccchhccCCC---cHHHHH----HHHHHC----CCCCcEEEEEeeCchHHHH
Q 007085 251 LDEADQMLSVG---FAEDVE----VILERL----PQNRQSMMFSATMPPWIRS 292 (618)
Q Consensus 251 iDEaH~~~~~~---~~~~~~----~il~~l----~~~~~~l~lSAT~~~~~~~ 292 (618)
|||+|.+.... -.+..+ +++..+ ..+--+|++.||-.|++..
T Consensus 231 iDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 231 IDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLD 283 (439)
T ss_pred eehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHH
Confidence 99999775432 111112 222222 2345689999998776544
No 423
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.69 E-value=2.2 Score=43.10 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCCcceEEEccchhccCC-CcHHHHHHHHHHC------CCCCcEEEEEeeCchHHHHHHHHh
Q 007085 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERL------PQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l------~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..++++||||=+-++... ..-..+.++...+ .+...++.++||........+..+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 367899999999876432 1224444444432 234457899999765433334444
No 424
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.68 E-value=0.29 Score=53.16 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+.+|+.||.|+|||..+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 348999999999998654
No 425
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.63 E-value=0.42 Score=46.16 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|+|.|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 36999999999999854
No 426
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.60 E-value=0.7 Score=50.88 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
..+++++||||+|+|... -...+.+.++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999987532 2334455555544455555444
No 427
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.55 E-value=0.22 Score=50.27 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999744
No 428
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.55 E-value=0.26 Score=54.82 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=14.1
Q ss_pred EEEEccCCChhHHHHH
Q 007085 139 MIGRARTGTGKTLAFG 154 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l 154 (618)
.|+.||.|+|||.++.
T Consensus 43 YLF~GP~GtGKTt~Ar 58 (725)
T PRK07133 43 YLFSGPRGTGKTSVAK 58 (725)
T ss_pred EEEECCCCCcHHHHHH
Confidence 6899999999998664
No 429
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.81 Score=50.59 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.3
Q ss_pred CEEEEccCCChhHHHHH
Q 007085 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l 154 (618)
.+|+.+|.|+|||.++.
T Consensus 40 a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 40 AYLFTGPRGVGKTSTAR 56 (585)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36999999999998653
No 430
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.46 E-value=0.65 Score=47.37 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
.++++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998553
No 431
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.46 E-value=0.41 Score=54.02 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=57.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc------CCeee-ecCcCCHHHHHHHHHHHhcCCccEEEEcCcc-ccCCC-CC--C
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS------YNCEP-LHGDISQSQRERTLSAFRDGRFNILIATDVA-ARGLD-VP--N 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~-lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~-~~GlD-i~--~ 411 (618)
+++++++.+||..-+.++++.|.+. +.+.. +|+.++.+++++++++|.+|+.+|||+|..+ ..-.| +. .
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~k 203 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLK 203 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccC
Confidence 5689999999999999888887541 22222 8999999999999999999999999999743 22221 12 3
Q ss_pred ccEEEEcC
Q 007085 412 VDLIIHYE 419 (618)
Q Consensus 412 ~~~VI~~~ 419 (618)
.++|+.-|
T Consensus 204 FdfifVDD 211 (1187)
T COG1110 204 FDFIFVDD 211 (1187)
T ss_pred CCEEEEcc
Confidence 56666544
No 432
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.41 E-value=0.54 Score=47.41 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 231 ~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
.+.+.+....+ ....+++||||+|.|... ....+.++++.-+ +..+|++|..+
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECCh
Confidence 34444443333 357899999999998433 3445555666555 55555555443
No 433
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.31 E-value=1.2 Score=46.79 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCcceEEEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..+++||||=+-++.. ......+..+...+.+.-.++++.||........+..+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 4567788887765432 11234444445555555557777777665555544444
No 434
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.30 E-value=0.27 Score=45.15 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=29.1
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCC-CcEEEEEe
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSMMFSA 284 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~-~~~l~lSA 284 (618)
+.+.+++++||...-++......+.+++..+... .++|+.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3567899999999888876666666666665333 55555544
No 435
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.29 E-value=1.2 Score=51.73 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.+.|+.+|+|+|||..+
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999755
No 436
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.20 E-value=1.2 Score=49.23 Aligned_cols=71 Identities=17% Similarity=0.323 Sum_probs=55.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+|+..++++++.|.+. .+.+..+++..+..++...++ ...+||||| + +....+++.++++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----d-v~arGIDip~V~~ 328 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----D-VAARGLHIDGVKY 328 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----h-hhhcCCCccCCCE
Confidence 568999999999999999999876 467888898888766655443 358999999 3 4445677889998
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 329 VIn 331 (572)
T PRK04537 329 VYN 331 (572)
T ss_pred EEE
Confidence 884
No 437
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.13 E-value=2.5 Score=40.49 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+++|.|++|||||. +++-++..+
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhh
Confidence 68999999999996 556665554
No 438
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.47 Score=54.28 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=76.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
.....|+.++.-..++..|+..-...+..-+...=-.|..-+.+|..+|.|+|||+++-. +....
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~ara-La~~~-------------- 323 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARA-LAAAC-------------- 323 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHh-hhhhh--------------
Confidence 455667888877778888876544322221111111233345699999999999985421 11111
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
...-++. ....+.-...-..-|+..++=+.++....- -.....|.+||++
T Consensus 324 --------------s~~~~ki---------------sffmrkgaD~lskwvgEaERqlrllFeeA~-k~qPSIIffdeId 373 (1080)
T KOG0732|consen 324 --------------SRGNRKI---------------SFFMRKGADCLSKWVGEAERQLRLLFEEAQ-KTQPSIIFFDEID 373 (1080)
T ss_pred --------------ccccccc---------------chhhhcCchhhccccCcHHHHHHHHHHHHh-ccCceEEeccccc
Confidence 1110110 000000000112235555555555543322 3456789999999
Q ss_pred hccCC----------CcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 256 QMLSV----------GFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 256 ~~~~~----------~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
-+.-. .....+..++.-++..-|+++.+||.
T Consensus 374 GlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 374 GLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred cccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 43211 12344455556667788999999995
No 439
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.11 E-value=0.82 Score=49.55 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=30.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHcC--CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+...|+++.-.+++++.+...- +..+..++... ....+.+|+.+|+|+|||+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 34556777766666665554311 11111222111 122357999999999999844
No 440
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.08 E-value=2 Score=43.11 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=63.4
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 216 (618)
+.+-+.+++|.|||. |+-++-..+- ...-.-++...-+..+++++.++- |..
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp----------~~~k~R~HFh~FM~~vH~~l~~l~---------g~~------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLP----------GERKRRLHFHRFMARVHQRLHTLQ---------GQT------- 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCC----------ccccccccHHHHHHHHHHHHHHHc---------CCC-------
Confidence 558999999999996 4443333211 111234556677777888777652 111
Q ss_pred HhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHH
Q 007085 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
+.+ ..+.+.+ ..+.++++|||.|- .|..-...+..+++.+ ...+.++.+|-|.|+.+
T Consensus 118 ------dpl----~~iA~~~------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 ------DPL----PPIADEL------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ------Ccc----HHHHHHH------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 111 0111111 34677899999993 3333334445555443 56888999999998754
No 441
>PHA00012 I assembly protein
Probab=92.05 E-value=1.4 Score=43.73 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~ 163 (618)
.+|.+..|+|||+.++.-++..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5889999999999887766666543
No 442
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.03 E-value=1 Score=49.66 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-+++.+|+|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3899999999999854
No 443
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.01 E-value=1.4 Score=50.17 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999854
No 444
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.00 E-value=1.5 Score=45.35 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=62.1
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH----HHHHHHhCCC-CceEEE-EcCCchHH
Q 007085 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV----EKEFHESAPS-LDTICV-YGGTPISH 213 (618)
Q Consensus 140 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~----~~~l~~~~~~-~~~~~~-~~~~~~~~ 213 (618)
|+.++.|+|||.+..+.++..+.... ....++++ |+...+.+. ...+..+.+. +..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI-- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE--
Confidence 57889999999987776666655411 12345555 665555442 3334444433 221111 001100
Q ss_pred HHHHhhcCCCEEEEChHHH--HHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeC--chH
Q 007085 214 QMRALDYGVDAVVGTPGRV--IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM--PPW 289 (618)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l--~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~--~~~ 289 (618)
.+.++..|.+.+...- ...+. =..+++||+||+-.+.+..+...+...+.... ....++.|.|+ ...
T Consensus 72 ---~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 72 ---ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGW 142 (384)
T ss_dssp ---EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSH
T ss_pred ---EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCc
Confidence 0134455666663321 11111 25678999999887754433333333333222 22222444443 345
Q ss_pred HHHHHHHhcCCC
Q 007085 290 IRSLTNKYLKNP 301 (618)
Q Consensus 290 ~~~~~~~~l~~~ 301 (618)
...+......+.
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 555666555554
No 445
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.00 E-value=0.43 Score=51.40 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=26.4
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++++||||+|+|... ....+.+.++..++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 357899999999998543 2344555555555666666655
No 446
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.95 E-value=0.2 Score=49.88 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=42.9
Q ss_pred CCCCChHHHHHHHHHHhCCC-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007085 118 GISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
.+..+++-|...+..+.... |+|+++.||||||. .+-+++..+. ..-+++.+=-|.||.-+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-lLNal~~~i~---------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-LLNALSGFID---------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-HHHHHHhcCC---------CcccEEEEeehhhhccC
Confidence 45567889988888777664 99999999999997 2333333321 13378888888777543
No 447
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.82 E-value=0.83 Score=47.71 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=58.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh---c-CCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
.+.++|++.++.-|.-+++.|.+.. +.+..+|++....++...+. . ..+|+||| .+....+++.++++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT------DvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG--YKVTTLHGGKSQEQRENALADFREGTGDILVAT------DVAGRGIDIPNVSL 588 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc--ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe------cccccCCCCCccce
Confidence 5679999999999999999999874 88899999998887766554 2 58999999 55566788999999
Q ss_pred EE
Q 007085 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 589 Vi 590 (673)
T KOG0333|consen 589 VI 590 (673)
T ss_pred ee
Confidence 88
No 448
>PRK06321 replicative DNA helicase; Provisional
Probab=91.81 E-value=2.1 Score=45.77 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=56.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCCchHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQM 215 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~~~~~~~ 215 (618)
.=++|.|.+|.|||..++- ++..+... .+..++|+.. ..-..|+.+++......+...-+ .+..+..++.
T Consensus 227 ~LiiiaarPgmGKTafal~-ia~~~a~~-------~g~~v~~fSL-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~ 297 (472)
T PRK06321 227 NLMILAARPAMGKTALALN-IAENFCFQ-------NRLPVGIFSL-EMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQ 297 (472)
T ss_pred cEEEEEeCCCCChHHHHHH-HHHHHHHh-------cCCeEEEEec-cCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHH
Confidence 3478899999999975544 44443210 1334666643 34445555555432222222111 2222222222
Q ss_pred ------HHhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 216 ------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 216 ------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
..+. ...+.|- |.+.+...+++-.. -..+++||||=.+.+.
T Consensus 298 ~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 298 RIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 2222 2345554 55556544443221 2458899999999875
No 449
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.78 E-value=0.53 Score=51.60 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=24.5
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
+++-+++|+||+-.-+|......+.+.+..+.+++.+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45666777777776666555555655555554444444443
No 450
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.73 E-value=1 Score=46.61 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHhCCCCEEEEccCCChhHHHHH
Q 007085 131 EPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~l 154 (618)
+.+..+.|+++.+|+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 677788999999999999997664
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.72 E-value=4.5 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=16.2
Q ss_pred CCEEEEccCCChhHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~ 157 (618)
.-+++.+|||+|||++....+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 347899999999998654433
No 452
>PRK09087 hypothetical protein; Validated
Probab=91.70 E-value=0.56 Score=44.87 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=24.7
Q ss_pred ceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee-Cch
Q 007085 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT-MPP 288 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT-~~~ 288 (618)
++|+||++|.+.. ....+..+++.+......+++|++ .|+
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 3799999997632 345566777666554444555555 444
No 453
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=1.5 Score=44.10 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCh-HHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 98 GLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..+|.+++=-+.+++.|+..-+..++ |-.-.--..+...+.+|+.+|+|+|||..+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 34677777777777777664333222 111111122234477999999999999855
No 454
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.62 E-value=0.59 Score=44.69 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=26.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
+.-+.|.+++|+|||..++..+...+... . . .+....++++...
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~-~-~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-E-L-GGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-c-c-CCCcceEEEEecC
Confidence 45689999999999986655444433210 0 0 0112567777654
No 455
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.59 E-value=0.98 Score=48.71 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHhCC-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 127 KAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 127 ~~~i~~i~~~-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
...++.++.+ .-++|.+|+|+|||+.++..+...+.+ +.+++++. ..|-..|+.+.+..+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---------ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---------KERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE-eeCCHHHHHHHHHHc
Confidence 3456666654 558999999999998666555544422 55788877 467778888887765
No 456
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.54 E-value=0.26 Score=56.61 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=71.3
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p 421 (618)
.-.++|||+.-....+.+...+... +.+.. .+. .++-...+..|++=. .+++-+...+.|+|+-++.||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~-~~~--t~d~~dc~~~fk~I~-clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQL-DGE--TEDFDDCIICFKSID-CLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhh-ccC--Ccchhhhhhhcccce-EEEEEeccCcccccHHhhhhhheeccc
Confidence 3468999998877777776665432 22221 222 223345566666622 245666788899999999999999999
Q ss_pred CChhHHHHHhccCCCCCCcceEEEEe
Q 007085 422 NTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 422 ~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
.++....|.+||++|.|++-..++..
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhhhh
Confidence 99999999999999999876655443
No 457
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.53 E-value=2.9 Score=48.03 Aligned_cols=17 Identities=24% Similarity=0.016 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 348 ~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLG 364 (775)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999744
No 458
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=91.50 E-value=4.6 Score=45.19 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=58.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.++||+|+|+..++.+.+.|.+. ++.+..+++......+...+. ...+|+||| + +....+++.++++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~-~L~rGfDiP~v~l 513 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----N-LLREGLDLPEVSL 513 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----C-hhcCCeeeCCCcE
Confidence 678999999999999999999876 467777777766554433332 358999999 3 3445677999999
Q ss_pred EEEccchhc
Q 007085 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||+-|++..
T Consensus 514 Vvi~Dadif 522 (655)
T TIGR00631 514 VAILDADKE 522 (655)
T ss_pred EEEeCcccc
Confidence 998887764
No 459
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.46 E-value=1.8 Score=45.42 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.0
Q ss_pred CEEEEccCCChhHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~ 155 (618)
.+|+.+|.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 388999999999986643
No 460
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.46 E-value=0.14 Score=61.08 Aligned_cols=92 Identities=25% Similarity=0.432 Sum_probs=75.2
Q ss_pred cEEEEecchhHHHHHHHHHHhc--CCeeeecCcCC-----------HHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 346 KCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDIS-----------QSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~-----------~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
..++|++....+..+.+.++.. +.+..+.|.+. ...+.+++..|....+.+|++|.++++|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 5689999999988888887653 23333434322 2235788999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhccCCCC
Q 007085 413 DLIIHYELPNTSETFVHRTGRTGRA 437 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~ 437 (618)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999664
No 461
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.44 E-value=0.38 Score=48.34 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=30.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
+.-+.|.+|+|+|||..++..+...... +..++++.+-..+-.+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~---------g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL---------GGTVAFIDAEHALDPVY 99 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCCEEEECccccHHHHH
Confidence 3458899999999998665555444322 56788888765555443
No 462
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.43 E-value=1.2 Score=42.09 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=25.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
+.-+.|.+++|+|||..++..+...... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---------g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---------GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 3458999999999998765544443321 4567777654
No 463
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.42 E-value=0.37 Score=48.40 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=29.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
+.-++|.+|+|+|||..++..+...... +..++++..-..+..+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~---------g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEcccchhHHH
Confidence 3558999999999998665554444321 5567777665444443
No 464
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.39 E-value=0.46 Score=46.08 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=16.6
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007085 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (618)
+..++.++|.++.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3467889999999999996
No 465
>CHL00176 ftsH cell division protein; Validated
Probab=91.38 E-value=1 Score=49.99 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999854
No 466
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.34 E-value=1.3 Score=44.96 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=28.9
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
++...++++|+++||||||. ++-+++..+-. ..+++.+=-+.||
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~---------~~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREIPA---------IERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhCCC---------CCeEEEecCCCcc
Confidence 34567899999999999996 44565555421 3456665444444
No 467
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=2.1 Score=40.69 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+|..+|+|+|||+.+
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 67999999999999855
No 468
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.25 E-value=0.25 Score=50.24 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
++..+++++|+++||||||. ++-+++..+- ...+++.+=.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~---------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAIP---------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHcccC---------CCCCEEEECCCcccc
Confidence 45567899999999999996 4455554431 134567777776663
No 469
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.17 E-value=1.2 Score=46.00 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=19.9
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+-.++.++|.+|+|+|||..+ ..+...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhh
Confidence 346788999999999999743 3344433
No 470
>PRK05595 replicative DNA helicase; Provisional
Probab=91.06 E-value=0.66 Score=49.44 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=55.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEE-cCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~-~~~~~~~~ 214 (618)
+.-++|.|.||.|||..++-.+.....+ .+..++++.. ..-..|+..++.....++....+. +..+...+
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~--------~g~~vl~fSl-Ems~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~ 271 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR--------EGKSVAIFSL-EMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDW 271 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH--------cCCcEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence 3447889999999997554444332222 1445777654 344455555544332222221111 11222222
Q ss_pred HHHhh-----cCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 215 MRALD-----YGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 215 ~~~~~-----~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
..... ....+.|- |++.+...+.+... -..+++||||=.|.+..
T Consensus 272 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 272 ENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 11111 11233332 34555444433211 23588999999998753
No 471
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.99 E-value=1.4 Score=45.69 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+++.+|+|+|||+.+
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999744
No 472
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.97 E-value=0.56 Score=51.40 Aligned_cols=18 Identities=39% Similarity=0.346 Sum_probs=14.8
Q ss_pred CEEEEccCCChhHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~ 155 (618)
-.|+.+|.|+|||.++-+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986643
No 473
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.96 E-value=1.7 Score=44.52 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=27.0
Q ss_pred HHHHHHHHHHh---CCCCEEEEccCCChhHHHHHHHHHHHHH
Q 007085 124 PIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 124 ~~Q~~~i~~i~---~~~~~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
++-.++|+.+. +++..+|.++.|+|||... ..++..+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl-~~la~~i~ 158 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL-QQIAAAVA 158 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 44556777765 6789999999999999743 33444443
No 474
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=1.8 Score=45.55 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHH-------HhCC-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007085 103 KLDISQDIVAALARRGISKLFPIQKAVLEP-------AMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-------i~~~-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~ 170 (618)
.++.+++.++.+...+.....+.=.+.+.. +... ..+|+.+|.|||||..+.-.++.
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------- 561 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh-----------
Confidence 456777777777777665555544444432 1111 24899999999999743222211
Q ss_pred CCCCeEEEEcCc
Q 007085 171 GRNPLCLVLAPT 182 (618)
Q Consensus 171 ~~~~~~lil~Pt 182 (618)
..-|.+=|+.|.
T Consensus 562 S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 SDFPFVKIISPE 573 (744)
T ss_pred cCCCeEEEeChH
Confidence 124667777774
No 475
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.86 E-value=2.3 Score=49.18 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHh----C--CCCEEEEccCCChhHHHH
Q 007085 126 QKAVLEPAM----Q--GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 126 Q~~~i~~i~----~--~~~~li~~~tGsGKT~~~ 153 (618)
|.+.|..+. . ..++|+.+|+|+|||..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555543 2 257999999999999754
No 476
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.85 E-value=0.79 Score=50.13 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=74.8
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE-EcCcHHHHHHHHHHHHHhCCCCceEE--------
Q 007085 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQVEKEFHESAPSLDTIC-------- 204 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li-l~Pt~~La~q~~~~l~~~~~~~~~~~-------- 204 (618)
..++.+.+.+|.|+|||.++ .++.++.. ....++++ =+|.+.+-.+|.+..-.+.. ...++
T Consensus 492 ~pGe~vALVGPSGsGKSTia--sLL~rfY~-------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~-QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIA--SLLLRFYD-------PTSGRILLDGVPISDINHKYLRRKIGLVG-QEPVLFSGSIREN 561 (716)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHHhcC-------CCCCeEEECCeehhhcCHHHHHHHeeeee-ccceeecccHHHH
Confidence 34677999999999999843 34444433 11233333 26777776666654322111 11111
Q ss_pred -EEcCCchHH--------------HHHHhhcCCCEEEEChHHHHH------HHHhcCCCCCCcceEEEccchhccCCCcH
Q 007085 205 -VYGGTPISH--------------QMRALDYGVDAVVGTPGRVID------LIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 205 -~~~~~~~~~--------------~~~~~~~~~~Ilv~T~~~l~~------~l~~~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
.||..+..+ .+..+.++.+-.|+..+..+. ....+.+ +++..++|+|||-.-+|..-+
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL-lr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL-LRNPRVLILDEATSALDAESE 640 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH-hcCCCEEEEechhhhcchhhH
Confidence 122221111 112222345555665543321 1111122 677889999999988887777
Q ss_pred HHHHHHHHHCCCCCcEEE
Q 007085 264 EDVEVILERLPQNRQSMM 281 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~ 281 (618)
..+++.+..+..++.+|.
T Consensus 641 ~lVq~aL~~~~~~rTVlv 658 (716)
T KOG0058|consen 641 YLVQEALDRLMQGRTVLV 658 (716)
T ss_pred HHHHHHHHHhhcCCeEEE
Confidence 888888887776644333
No 477
>PTZ00110 helicase; Provisional
Probab=90.78 E-value=1.6 Score=47.95 Aligned_cols=71 Identities=17% Similarity=0.308 Sum_probs=55.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++.-+..+++.+... .+.+..++++....++...++ ....||||| .+....+++.++++
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT------dv~~rGIDi~~v~~ 448 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT------DVASRGLDVKDVKY 448 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc------chhhcCCCcccCCE
Confidence 568999999999999999998754 467788898887766654433 357899999 34455678899999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 449 VI~ 451 (545)
T PTZ00110 449 VIN 451 (545)
T ss_pred EEE
Confidence 884
No 478
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.68 E-value=2 Score=44.24 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=19.6
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
-+++..+|.+|.|+|||..+ ..+...+
T Consensus 167 GkGQR~lIvgppGvGKTTLa-K~Ian~I 193 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL-QNIANSI 193 (416)
T ss_pred ccCceEEEeCCCCCChhHHH-HHHHHHH
Confidence 35788999999999999633 3344444
No 479
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.56 E-value=1.2 Score=51.57 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999855
No 480
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.52 E-value=1.1 Score=42.68 Aligned_cols=55 Identities=16% Similarity=0.369 Sum_probs=29.1
Q ss_pred ChHHHHHHHHhcCCCCCCcceEEEccchhcc-CC----CcHHHHHHHHHHCCC-CCcEEEEEeeC
Q 007085 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQML-SV----GFAEDVEVILERLPQ-NRQSMMFSATM 286 (618)
Q Consensus 228 T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~-~~----~~~~~~~~il~~l~~-~~~~l~lSAT~ 286 (618)
+...++..+...... -+|||||+|.+. .. .+...+..++..+.. ....++++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 444555555543221 579999999988 21 234455555555332 23345566664
No 481
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.51 E-value=3.4 Score=41.18 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=66.3
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc-C-cHHHHHHHHHHHHHhCCCCceEEEE---cCCchHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA-P-TRELAKQVEKEFHESAPSLDTICVY---GGTPISH 213 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~-P-t~~La~q~~~~l~~~~~~~~~~~~~---~~~~~~~ 213 (618)
+++.+-.|+|||.+.- -+..++.+ .+.++++.+ - -|+-|.++.+.+-+. +.+-++. |..+..-
T Consensus 142 il~vGVNG~GKTTTIa-KLA~~l~~--------~g~~VllaA~DTFRAaAiEQL~~w~er---~gv~vI~~~~G~DpAaV 209 (340)
T COG0552 142 ILFVGVNGVGKTTTIA-KLAKYLKQ--------QGKSVLLAAGDTFRAAAIEQLEVWGER---LGVPVISGKEGADPAAV 209 (340)
T ss_pred EEEEecCCCchHhHHH-HHHHHHHH--------CCCeEEEEecchHHHHHHHHHHHHHHH---hCCeEEccCCCCCcHHH
Confidence 7889999999998542 22222222 255666665 2 234444333333332 3333332 2222111
Q ss_pred HHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcHHHHHHHHHHCCCCC------cEEEEEeeC
Q 007085 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNR------QSMMFSATM 286 (618)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~------~~l~lSAT~ 286 (618)
..+.++.. ..+++++|++|=|-|+-+. ..-..+++|.+-+.+.. -++.+-||.
T Consensus 210 ------------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 210 ------------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred ------------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 12233221 1467888999999887543 23455666666655433 345558888
Q ss_pred chHHHHHHHHh
Q 007085 287 PPWIRSLTNKY 297 (618)
Q Consensus 287 ~~~~~~~~~~~ 297 (618)
-.+...-++.|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 66544444433
No 482
>PRK10263 DNA translocase FtsK; Provisional
Probab=90.50 E-value=1.3 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=18.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
.++||.+.||||||.+.-..|+..+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999754444443333
No 483
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.50 E-value=0.51 Score=49.55 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHhCCCC--EEEEccCCChhHHHHHHHHHHHHH
Q 007085 122 LFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
+.+.|.+.+..+++... +|+.+|||||||.+ +..++..+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 36788888888877655 78999999999974 466666653
No 484
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.43 E-value=0.74 Score=46.87 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.6
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
....+++||||+|++... ....+.+.++.-+....+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 456789999999998433 33445555555445555555444
No 485
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.43 E-value=1.1 Score=44.09 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhHH
Q 007085 137 RDMIGRARTGTGKTL 151 (618)
Q Consensus 137 ~~~li~~~tGsGKT~ 151 (618)
+++++.+++|+|||.
T Consensus 112 ~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 112 LNTLIISPPQCGKTT 126 (270)
T ss_pred eEEEEEcCCCCCHHH
Confidence 579999999999997
No 486
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.39 E-value=2 Score=46.01 Aligned_cols=70 Identities=23% Similarity=0.371 Sum_probs=54.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++.-++.+++.+.+. .+.+..++++.+..++...+. ...+||||| + +....+++.++++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----d-v~~rGiDip~v~~ 316 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----D-IAARGLDIEELPH 316 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----c-HHhcCCCcccCCE
Confidence 457999999999999999999875 467888898888766654443 358999999 3 3445677888888
Q ss_pred EE
Q 007085 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 317 VI 318 (456)
T PRK10590 317 VV 318 (456)
T ss_pred EE
Confidence 87
No 487
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.38 E-value=6.8 Score=35.95 Aligned_cols=32 Identities=3% Similarity=-0.082 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCCcEEEEEeeCchHHHHHHH
Q 007085 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
+.+.+-...++++.++++++++-..-+.+++.
T Consensus 163 evm~~da~~~np~~~ii~~n~ktg~G~~~~~~ 194 (202)
T COG0378 163 EVMARDAKEVNPEAPIIFTNLKTGEGLDEWLR 194 (202)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHH
Confidence 55666777788899999999987665555443
No 488
>PRK09165 replicative DNA helicase; Provisional
Probab=90.34 E-value=2.2 Score=46.13 Aligned_cols=120 Identities=10% Similarity=0.067 Sum_probs=58.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhh------cCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCC
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEK------HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGT 209 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~------~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~ 209 (618)
.-++|.|.+|.|||..++-.++....+.... +....+..++|+.. ..-..|+..++......+....+ .+..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3489999999999976554444333221100 00012445666643 45556666666444322322111 1222
Q ss_pred chHHHHHHhh-----cCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhcc
Q 007085 210 PISHQMRALD-----YGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (618)
Q Consensus 210 ~~~~~~~~~~-----~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~ 258 (618)
...++.+... ...++.|- |++.+...+++-.. -..+++||||=.|.+.
T Consensus 297 ~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 297 SEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 2222211111 12344443 45556544443221 2358899999999775
No 489
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.16 E-value=2 Score=46.65 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=57.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcceE
Q 007085 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (618)
.++||.|.|+..+..++..+.+. ++.+..+||+.+...+.+.+. ...+|+||| .+....+++.++.+|
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT------DvaaRGiDi~~v~~V 345 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT------DVAARGLDIPDVSHV 345 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe------chhhccCCcccccee
Confidence 36999999999999999988886 378999999999887766554 458999999 555677889999988
Q ss_pred E
Q 007085 250 V 250 (618)
Q Consensus 250 V 250 (618)
|
T Consensus 346 i 346 (513)
T COG0513 346 I 346 (513)
T ss_pred E
Confidence 7
No 490
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.13 E-value=0.89 Score=43.49 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=25.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
+.-++|.+++|+|||..++..+.+.+.. +.+++++.-
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~---------~~~v~yi~~ 59 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN---------GKKVIYIDT 59 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEC
Confidence 3558999999999998665555444322 456777654
No 491
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.09 E-value=0.57 Score=43.65 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=12.9
Q ss_pred EEEEccCCChhHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~ 156 (618)
.++++.+|+|||+.++.-
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 578999999999866555
No 492
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.06 E-value=1.9 Score=49.87 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 57999999999999855
No 493
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.02 E-value=2.3 Score=47.01 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.1
Q ss_pred CEEEEccCCChhHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~ 155 (618)
..|+.+|.|+|||.++.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 489999999999986643
No 494
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.94 E-value=0.51 Score=50.90 Aligned_cols=46 Identities=26% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHH
Q 007085 119 ISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKF 164 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~ 164 (618)
+.+|+.+|.+.+..+. +++-.|+..|||+|||+..+=+++.++...
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 3568899988877654 567789999999999998877788777654
No 495
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.91 E-value=1.9 Score=48.11 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred EEEEEeccCCcchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHhc--CCeeeecCcCCHHHHHHHHHHHhcCCcc
Q 007085 319 SLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
.....-..-..|.+.+.+++... ..++.+||.+|.+.....+.+.|... .++.++|++++..+|.+...+..+|+.+
T Consensus 219 ~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~ 298 (730)
T COG1198 219 PFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR 298 (730)
T ss_pred ceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce
Q ss_pred EEEEcCccccCCCCCCccEEEEcCCCCC
Q 007085 396 ILIATDVAARGLDVPNVDLIIHYELPNT 423 (618)
Q Consensus 396 vLVaT~~~~~GlDi~~~~~VI~~~~p~~ 423 (618)
|+|.|..+-. .-++++-.||......+
T Consensus 299 vVIGtRSAlF-~Pf~~LGLIIvDEEHD~ 325 (730)
T COG1198 299 VVIGTRSALF-LPFKNLGLIIVDEEHDS 325 (730)
T ss_pred EEEEechhhc-CchhhccEEEEeccccc
No 496
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.87 E-value=1.3 Score=49.01 Aligned_cols=135 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+..+..+.+.+++|||||. ++-++..+.. ....++++ .-..+.+=-.+.+++...-+.--...=..+..
T Consensus 352 i~~Ge~vaiVG~sGsGKST--l~~LL~r~~~-------~~~G~I~i--dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~ 420 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKST--LIKLLLRLYD-------PTSGEILI--DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420 (567)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhccCC-------CCCCeEEE--CCEehhhcCHHHHHHhccEEcccceeecccHH
Q ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhcCCC-----------------------------------CCCcceEEEccchhc
Q 007085 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALN-----------------------------------LSEVQFVVLDEADQM 257 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~-----------------------------------~~~~~~vViDEaH~~ 257 (618)
+....-+.. +|.+.+.+.++..... +.+-.++|+|||..-
T Consensus 421 ~NI~~g~~~-----at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSa 495 (567)
T COG1132 421 ENIALGRPD-----ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSA 495 (567)
T ss_pred HHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccc
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 258 LSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
+|......+.+.+..+.+++.+++.+
T Consensus 496 lD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 496 LDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred cCHHhHHHHHHHHHHHhcCCEEEEEe
No 497
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.82 E-value=4.9 Score=43.95 Aligned_cols=134 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-cccC
Q 007085 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AARG 406 (618)
Q Consensus 333 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~~~G 406 (618)
.+..++.....+.++.+.+||.--|+.-+..+.+ .+.+..+.|.+...+|+++++...+|+++++|.|-+ +...
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Q ss_pred CCCCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcce---EEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 407 LDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGS---AILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 407 lDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
+++.++-.||+-...+ ...+-.+.. ++|. -+++.+....+.--.|..+-+..+..+.++.
T Consensus 380 V~F~~LgLVIiDEQHRFGV~QR~~L~-------~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP 443 (677)
T COG1200 380 VEFHNLGLVIIDEQHRFGVHQRLALR-------EKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELP 443 (677)
T ss_pred eeecceeEEEEeccccccHHHHHHHH-------HhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCC
No 498
>PRK09354 recA recombinase A; Provisional
Probab=89.78 E-value=2.9 Score=42.56 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHhC------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCc
Q 007085 128 AVLEPAMQ------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (618)
Q Consensus 128 ~~i~~i~~------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~ 201 (618)
..++.++. +.-+.|.+|+|||||..++..+.+.... +..++++..-..+-. +.+..+.-++.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~---------G~~~~yId~E~s~~~---~~a~~lGvdld 113 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDP---VYAKKLGVDID 113 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEECCccchHH---HHHHHcCCCHH
Q ss_pred eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
...+.--.+..+....+. .++. -..+++||||
T Consensus 114 ~lli~qp~~~Eq~l~i~~--------------~li~-----s~~~~lIVID 145 (349)
T PRK09354 114 NLLVSQPDTGEQALEIAD--------------TLVR-----SGAVDLIVVD 145 (349)
T ss_pred HeEEecCCCHHHHHHHHH--------------HHhh-----cCCCCEEEEe
No 499
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=3.8 Score=42.04 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+..+.-+||-+++|.|||...+..+.....+ + ++|||+= .|-..|+.-+..++.-......+...++..
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~---------~-~vLYVsG-EES~~QiklRA~RL~~~~~~l~l~aEt~~e 158 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR---------G-KVLYVSG-EESLQQIKLRADRLGLPTNNLYLLAETNLE 158 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhc---------C-cEEEEeC-CcCHHHHHHHHHHhCCCccceEEehhcCHH
Q ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC----------cHHHHHHHHHHCCCCCcEEEE
Q 007085 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~----------~~~~~~~il~~l~~~~~~l~l 282 (618)
.-...++ -.+.+++|||-++.+.... ..+...++++..+...-.+++
T Consensus 159 ~I~~~l~-----------------------~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 159 DIIAELE-----------------------QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred HHHHHHH-----------------------hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Q ss_pred EeeCchH
Q 007085 283 SATMPPW 289 (618)
Q Consensus 283 SAT~~~~ 289 (618)
..-.+++
T Consensus 216 VGHVTKe 222 (456)
T COG1066 216 VGHVTKE 222 (456)
T ss_pred EEEEccc
No 500
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.69 E-value=0.39 Score=48.61 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=0.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (618)
++|.+|.|+|||+.+-..+-+. +...+++... +|...|
T Consensus 151 llL~GPPGcGKTllAraiA~el------------g~~~i~vsa~-eL~sk~----------------------------- 188 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKM------------GIEPIVMSAG-ELESEN----------------------------- 188 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHc------------CCCeEEEEHH-HhhcCc-----------------------------
Q ss_pred hcCCCEEEEChHHHHHHHHhcCCCCC----CcceEEEccchhcc
Q 007085 219 DYGVDAVVGTPGRVIDLIKRNALNLS----EVQFVVLDEADQML 258 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~----~~~~vViDEaH~~~ 258 (618)
++.++++++.+.+...... ..++|+|||+|.+.
T Consensus 189 -------vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 189 -------AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred -------CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Done!