Query 007085
Match_columns 618
No_of_seqs 495 out of 2974
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.9E-57 9.9E-62 480.1 45.8 375 95-474 52-432 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.7E-54 1.3E-58 455.8 42.2 377 95-473 11-406 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.3E-53 4.4E-58 450.7 42.6 366 97-471 35-404 (410)
4 1s2m_A Putative ATP-dependent 100.0 9.9E-53 3.4E-57 442.4 43.4 368 96-473 18-388 (400)
5 1xti_A Probable ATP-dependent 100.0 8.9E-52 3E-56 433.8 43.5 366 99-472 8-380 (391)
6 3eiq_A Eukaryotic initiation f 100.0 1.9E-52 6.6E-57 442.3 37.6 369 95-472 36-409 (414)
7 1hv8_A Putative ATP-dependent 100.0 4.3E-51 1.5E-55 424.6 41.3 357 98-470 5-365 (367)
8 3sqw_A ATP-dependent RNA helic 100.0 4.5E-51 1.5E-55 448.8 38.7 361 106-468 28-416 (579)
9 3fht_A ATP-dependent RNA helic 100.0 1.7E-50 5.8E-55 427.1 40.3 367 96-474 22-404 (412)
10 3i5x_A ATP-dependent RNA helic 100.0 7.3E-51 2.5E-55 447.0 38.2 370 97-468 66-467 (563)
11 3pey_A ATP-dependent RNA helic 100.0 1.3E-49 4.6E-54 417.7 41.4 360 98-470 4-378 (395)
12 1fuu_A Yeast initiation factor 100.0 9.9E-52 3.4E-56 433.8 23.2 365 97-471 19-387 (394)
13 2z0m_A 337AA long hypothetical 100.0 9.3E-49 3.2E-53 402.1 39.1 333 106-463 1-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 1.1E-50 3.9E-55 436.4 18.4 364 97-472 90-469 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 2.2E-47 7.6E-52 415.6 37.1 339 101-458 23-382 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1E-46 3.5E-51 406.6 36.4 338 99-459 2-352 (523)
17 3fho_A ATP-dependent RNA helic 100.0 2.8E-48 9.5E-53 419.1 21.2 367 97-475 117-496 (508)
18 3oiy_A Reverse gyrase helicase 100.0 1.3E-45 4.5E-50 389.6 29.7 326 108-463 8-376 (414)
19 1gm5_A RECG; helicase, replica 100.0 1.5E-46 5.1E-51 417.2 20.9 378 42-453 297-700 (780)
20 2zj8_A DNA helicase, putative 100.0 5.5E-44 1.9E-48 402.2 32.6 349 100-468 2-403 (720)
21 2va8_A SSO2462, SKI2-type heli 100.0 5.6E-43 1.9E-47 394.2 36.3 338 98-451 7-409 (715)
22 2p6r_A Afuhel308 helicase; pro 100.0 5.6E-44 1.9E-48 401.0 27.9 337 100-452 2-390 (702)
23 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-43 7.5E-48 387.5 29.0 329 119-453 5-511 (556)
24 2ykg_A Probable ATP-dependent 100.0 4.1E-44 1.4E-48 403.4 22.3 341 112-458 4-524 (696)
25 3l9o_A ATP-dependent RNA helic 100.0 4E-43 1.4E-47 405.4 27.4 329 100-450 163-597 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 4.4E-43 1.5E-47 385.0 24.3 331 120-458 3-515 (555)
27 1wp9_A ATP-dependent RNA helic 100.0 6.3E-41 2.2E-45 361.6 36.1 319 121-452 9-477 (494)
28 4a2q_A RIG-I, retinoic acid in 100.0 7.2E-42 2.5E-46 388.7 29.9 331 117-453 244-752 (797)
29 2xgj_A ATP-dependent RNA helic 100.0 5.5E-41 1.9E-45 384.4 34.7 316 120-457 85-507 (1010)
30 4ddu_A Reverse gyrase; topoiso 100.0 4.4E-41 1.5E-45 388.4 30.0 324 109-463 66-503 (1104)
31 2eyq_A TRCF, transcription-rep 100.0 3.4E-40 1.2E-44 383.4 35.4 322 103-450 585-922 (1151)
32 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-40 3.7E-45 382.6 29.3 331 116-452 243-751 (936)
33 4gl2_A Interferon-induced heli 100.0 1.5E-41 5.2E-46 382.7 20.0 316 120-438 6-509 (699)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-40 3.6E-45 385.6 22.4 324 110-464 46-468 (1054)
35 4a4z_A Antiviral helicase SKI2 100.0 1.1E-39 3.8E-44 373.7 30.3 310 120-448 38-490 (997)
36 1tf5_A Preprotein translocase 100.0 6.3E-40 2.2E-44 356.3 25.7 320 116-451 79-546 (844)
37 4f92_B U5 small nuclear ribonu 100.0 1.1E-37 3.8E-42 372.1 34.1 338 106-458 911-1316(1724)
38 2oca_A DAR protein, ATP-depend 100.0 2.5E-38 8.6E-43 343.1 25.4 310 120-448 112-453 (510)
39 2fsf_A Preprotein translocase 100.0 2.4E-38 8.3E-43 342.8 23.4 318 117-452 71-585 (853)
40 2fwr_A DNA repair protein RAD2 100.0 1.1E-38 3.8E-43 342.4 20.2 291 120-446 92-448 (472)
41 2whx_A Serine protease/ntpase/ 100.0 2.8E-39 9.6E-44 352.9 11.1 314 104-463 155-494 (618)
42 1nkt_A Preprotein translocase 100.0 9.1E-37 3.1E-41 330.7 27.5 319 117-452 108-619 (922)
43 4f92_B U5 small nuclear ribonu 100.0 3.7E-37 1.3E-41 367.6 24.7 333 118-458 76-481 (1724)
44 1yks_A Genome polyprotein [con 100.0 3E-39 1E-43 341.1 5.1 287 132-463 4-315 (440)
45 2jlq_A Serine protease subunit 100.0 1.5E-37 5.3E-42 329.6 17.4 286 118-449 1-310 (451)
46 2xau_A PRE-mRNA-splicing facto 100.0 1.2E-36 4E-41 340.5 23.9 334 98-452 71-445 (773)
47 2wv9_A Flavivirin protease NS2 100.0 1.1E-37 3.9E-42 342.1 14.7 297 121-462 215-548 (673)
48 3o8b_A HCV NS3 protease/helica 100.0 1.5E-37 5.1E-42 335.6 14.1 278 120-453 216-517 (666)
49 3h1t_A Type I site-specific re 100.0 1E-35 3.4E-40 327.9 24.1 315 121-449 178-558 (590)
50 3dmq_A RNA polymerase-associat 100.0 1.7E-35 5.7E-40 340.0 23.0 333 120-462 152-625 (968)
51 1z63_A Helicase of the SNF2/RA 100.0 9.9E-35 3.4E-39 314.0 27.3 327 120-467 36-468 (500)
52 2v6i_A RNA helicase; membrane, 100.0 7E-35 2.4E-39 307.1 22.3 268 136-448 2-288 (431)
53 2z83_A Helicase/nucleoside tri 100.0 2.9E-35 9.9E-40 312.6 16.3 280 126-450 11-313 (459)
54 3fe2_A Probable ATP-dependent 100.0 2.2E-33 7.6E-38 273.1 25.4 214 93-307 23-238 (242)
55 3iuy_A Probable ATP-dependent 100.0 1.3E-33 4.3E-38 272.4 23.5 213 93-305 13-227 (228)
56 1vec_A ATP-dependent RNA helic 100.0 1.7E-32 5.9E-37 260.2 25.5 200 99-304 3-205 (206)
57 2gxq_A Heat resistant RNA depe 100.0 1.1E-32 3.8E-37 261.7 24.1 204 100-306 2-205 (207)
58 3mwy_W Chromo domain-containin 100.0 1.2E-32 4.2E-37 311.8 26.2 316 120-447 235-679 (800)
59 3ber_A Probable ATP-dependent 100.0 3.6E-32 1.2E-36 265.2 25.5 204 97-306 41-247 (249)
60 1q0u_A Bstdead; DEAD protein, 100.0 6E-33 2.1E-37 265.9 19.5 202 99-306 4-211 (219)
61 2oxc_A Probable ATP-dependent 100.0 2.2E-32 7.7E-37 263.9 23.4 207 93-306 18-228 (230)
62 3rc3_A ATP-dependent RNA helic 100.0 2.2E-32 7.4E-37 299.2 25.9 282 131-458 150-452 (677)
63 1z3i_X Similar to RAD54-like; 100.0 1.3E-31 4.3E-36 296.1 32.1 320 120-447 54-523 (644)
64 2pl3_A Probable ATP-dependent 100.0 8.2E-32 2.8E-36 261.2 26.1 209 95-306 21-232 (236)
65 3bor_A Human initiation factor 100.0 2.4E-32 8.3E-37 264.8 22.0 206 95-306 26-234 (237)
66 1qde_A EIF4A, translation init 100.0 1E-31 3.5E-36 258.4 23.6 204 96-306 11-216 (224)
67 3ly5_A ATP-dependent RNA helic 100.0 1.5E-31 5.2E-36 262.9 23.2 204 98-303 51-259 (262)
68 1t6n_A Probable ATP-dependent 100.0 2.3E-31 7.9E-36 255.1 22.5 201 99-305 14-219 (220)
69 3fmo_B ATP-dependent RNA helic 100.0 1.2E-31 4.1E-36 268.4 21.2 201 97-306 90-297 (300)
70 1wrb_A DJVLGB; RNA helicase, D 100.0 8.7E-32 3E-36 263.9 19.8 210 97-306 21-239 (253)
71 3dkp_A Probable ATP-dependent 100.0 2E-30 6.9E-35 252.9 19.8 209 94-307 20-241 (245)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 7.8E-30 2.7E-34 290.4 25.7 303 121-439 271-694 (1038)
73 3jux_A Protein translocase sub 100.0 4.3E-28 1.5E-32 257.3 35.3 313 120-452 74-589 (822)
74 1c4o_A DNA nucleotide excision 99.9 4.3E-26 1.5E-30 251.5 30.1 170 275-454 379-554 (664)
75 2d7d_A Uvrabc system protein B 99.9 2.9E-25 9.8E-30 244.8 28.5 170 275-454 385-560 (661)
76 2ipc_A Preprotein translocase 99.9 6.4E-24 2.2E-28 229.5 33.3 128 117-258 76-215 (997)
77 2hjv_A ATP-dependent RNA helic 99.9 9.5E-25 3.2E-29 198.1 20.9 153 316-469 8-161 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 8.9E-25 3E-29 203.1 16.6 176 295-474 9-186 (191)
79 1t5i_A C_terminal domain of A 99.9 1.5E-24 5.1E-29 198.4 17.9 157 316-473 4-162 (172)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.7E-25 1.9E-29 203.5 15.2 160 315-474 17-177 (185)
81 2rb4_A ATP-dependent RNA helic 99.9 3.8E-24 1.3E-28 196.6 18.9 155 316-471 6-168 (175)
82 1fuk_A Eukaryotic initiation f 99.9 2.8E-24 9.7E-29 195.4 17.6 154 318-472 4-159 (165)
83 3eaq_A Heat resistant RNA depe 99.9 1.2E-23 4E-28 199.3 20.1 151 320-471 8-159 (212)
84 3i32_A Heat resistant RNA depe 99.9 4E-23 1.4E-27 204.8 19.4 152 318-470 3-155 (300)
85 3b6e_A Interferon-induced heli 99.9 3.1E-23 1.1E-27 197.8 13.2 166 117-285 29-216 (216)
86 2vl7_A XPD; helicase, unknown 99.9 2.7E-21 9.2E-26 209.1 23.3 124 121-258 7-188 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 5.8E-24 2E-28 194.3 0.0 145 323-468 9-155 (170)
88 3llm_A ATP-dependent RNA helic 99.9 1.4E-21 4.7E-26 188.6 12.0 181 107-301 47-230 (235)
89 1rif_A DAR protein, DNA helica 99.8 1.6E-21 5.5E-26 193.8 10.7 153 120-290 112-266 (282)
90 3crv_A XPD/RAD3 related DNA he 99.8 2.2E-18 7.5E-23 187.1 32.6 127 121-259 3-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 5E-19 1.7E-23 170.4 16.1 139 120-289 92-231 (237)
92 1z5z_A Helicase of the SNF2/RA 99.7 9.3E-18 3.2E-22 164.3 11.2 121 326-446 93-218 (271)
93 4a15_A XPD helicase, ATP-depen 99.7 6.1E-16 2.1E-20 169.1 26.3 103 344-449 448-583 (620)
94 1w36_D RECD, exodeoxyribonucle 98.7 1.8E-08 6E-13 110.0 9.2 143 123-285 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.5 2E-06 6.7E-11 90.8 16.8 135 117-283 21-162 (459)
96 3e1s_A Exodeoxyribonuclease V, 98.3 1.5E-06 5E-11 93.9 11.0 122 120-283 188-313 (574)
97 4b3f_X DNA-binding protein smu 98.3 8E-07 2.7E-11 98.1 8.6 67 121-196 189-256 (646)
98 2gk6_A Regulator of nonsense t 98.2 1.2E-05 4.3E-10 88.0 15.1 70 119-196 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.2 1.8E-05 6E-10 88.8 16.2 69 120-196 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.1 2.9E-05 1E-09 86.8 14.3 69 120-196 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.0 0.00024 8.4E-09 78.4 20.5 71 120-197 8-78 (647)
102 3hgt_A HDA1 complex subunit 3; 97.8 0.00013 4.4E-09 71.3 12.3 119 327-450 107-237 (328)
103 2o0j_A Terminase, DNA packagin 97.4 0.00021 7.1E-09 72.5 7.4 70 120-196 162-231 (385)
104 3ec2_A DNA replication protein 97.2 0.0017 6E-08 58.5 10.0 18 136-153 38-55 (180)
105 3cpe_A Terminase, DNA packagin 97.1 0.00096 3.3E-08 72.5 9.2 145 121-288 163-315 (592)
106 3vkw_A Replicase large subunit 97.1 0.0013 4.5E-08 67.4 9.5 104 139-283 164-267 (446)
107 2orw_A Thymidine kinase; TMTK, 97.0 0.0023 7.8E-08 58.0 8.8 39 136-183 3-41 (184)
108 2b8t_A Thymidine kinase; deoxy 96.9 0.00045 1.5E-08 64.5 3.7 90 136-257 12-101 (223)
109 1xx6_A Thymidine kinase; NESG, 96.9 0.0015 5E-08 59.5 6.9 38 137-183 9-46 (191)
110 2j9r_A Thymidine kinase; TK1, 96.9 0.0011 3.9E-08 60.8 5.6 37 139-184 31-67 (214)
111 2zpa_A Uncharacterized protein 96.6 0.0044 1.5E-07 66.8 9.0 113 121-287 175-289 (671)
112 1l8q_A Chromosomal replication 96.5 0.015 5.1E-07 57.9 11.4 25 136-161 37-61 (324)
113 1pjr_A PCRA; DNA repair, DNA r 96.3 0.0075 2.6E-07 67.1 9.0 109 120-255 10-120 (724)
114 2orv_A Thymidine kinase; TP4A 96.3 0.0075 2.6E-07 55.9 7.3 38 137-183 20-57 (234)
115 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0048 1.7E-07 56.5 5.7 38 137-183 29-66 (219)
116 3te6_A Regulatory protein SIR3 96.3 0.012 3.9E-07 58.1 8.9 26 136-162 45-70 (318)
117 1w4r_A Thymidine kinase; type 96.3 0.0037 1.3E-07 56.5 4.8 37 137-182 21-57 (195)
118 2kjq_A DNAA-related protein; s 96.2 0.0013 4.5E-08 57.3 1.3 19 135-153 35-53 (149)
119 3h4m_A Proteasome-activating n 96.1 0.02 6.7E-07 55.7 9.7 54 97-153 12-68 (285)
120 2w58_A DNAI, primosome compone 96.1 0.027 9.3E-07 51.5 10.0 24 137-161 55-78 (202)
121 2chg_A Replication factor C sm 96.0 0.048 1.6E-06 50.3 11.4 40 244-284 101-140 (226)
122 2z4s_A Chromosomal replication 95.9 0.039 1.3E-06 57.3 11.1 43 245-287 194-238 (440)
123 2v1u_A Cell division control p 95.9 0.058 2E-06 54.7 12.3 25 136-161 44-68 (387)
124 1uaa_A REP helicase, protein ( 95.7 0.013 4.5E-07 64.7 7.3 71 121-198 2-72 (673)
125 4b4t_J 26S protease regulatory 95.7 0.09 3.1E-06 53.2 12.5 55 96-153 142-199 (405)
126 3kl4_A SRP54, signal recogniti 95.6 0.075 2.6E-06 54.6 11.9 55 243-297 177-234 (433)
127 1a5t_A Delta prime, HOLB; zinc 95.6 0.0078 2.7E-07 60.2 4.5 33 122-154 3-42 (334)
128 1g5t_A COB(I)alamin adenosyltr 95.4 0.14 4.6E-06 46.3 11.3 135 137-294 29-171 (196)
129 2p65_A Hypothetical protein PF 95.4 0.049 1.7E-06 48.7 8.6 18 136-153 43-60 (187)
130 1d2n_A N-ethylmaleimide-sensit 95.4 0.15 5E-06 49.1 12.4 17 137-153 65-81 (272)
131 3n70_A Transport activator; si 95.3 0.032 1.1E-06 48.0 6.8 21 133-153 21-41 (145)
132 2qgz_A Helicase loader, putati 95.2 0.058 2E-06 53.1 8.9 25 136-161 152-176 (308)
133 3bos_A Putative DNA replicatio 95.2 0.024 8E-07 53.3 5.9 19 135-153 51-69 (242)
134 1jbk_A CLPB protein; beta barr 95.1 0.41 1.4E-05 42.5 14.1 24 137-161 44-67 (195)
135 3eie_A Vacuolar protein sortin 95.1 0.034 1.2E-06 55.2 7.1 51 97-153 13-68 (322)
136 4b4t_M 26S protease regulatory 95.0 0.088 3E-06 54.0 10.0 56 95-153 174-232 (434)
137 3u4q_A ATP-dependent helicase/ 95.0 0.032 1.1E-06 65.9 7.4 125 121-255 10-137 (1232)
138 2qby_B CDC6 homolog 3, cell di 94.9 0.055 1.9E-06 55.0 8.4 24 137-161 46-69 (384)
139 3co5_A Putative two-component 94.9 0.013 4.3E-07 50.5 2.9 21 133-153 24-44 (143)
140 3cf0_A Transitional endoplasmi 94.9 0.071 2.4E-06 52.2 8.7 54 97-153 10-66 (301)
141 3u61_B DNA polymerase accessor 94.9 0.059 2E-06 53.4 8.1 40 244-283 104-143 (324)
142 1gm5_A RECG; helicase, replica 94.7 0.14 4.9E-06 56.9 11.4 95 328-422 400-501 (780)
143 4b4t_I 26S protease regulatory 94.6 0.2 6.7E-06 51.0 11.2 56 95-153 175-233 (437)
144 1sxj_D Activator 1 41 kDa subu 94.6 0.19 6.7E-06 50.1 11.4 40 244-284 132-171 (353)
145 4b4t_H 26S protease regulatory 94.6 0.25 8.4E-06 50.8 11.8 55 96-153 203-260 (467)
146 4b4t_K 26S protease regulatory 94.5 0.23 8E-06 50.9 11.4 55 96-153 166-223 (428)
147 1iqp_A RFCS; clamp loader, ext 94.4 0.15 5.3E-06 50.2 9.9 39 244-283 109-147 (327)
148 2qz4_A Paraplegin; AAA+, SPG7, 94.4 0.12 4.1E-06 49.2 8.7 18 136-153 39-56 (262)
149 4b4t_L 26S protease subunit RP 94.4 0.16 5.5E-06 52.1 10.0 55 96-153 175-232 (437)
150 3vfd_A Spastin; ATPase, microt 94.3 0.14 4.7E-06 52.3 9.5 54 97-153 110-165 (389)
151 2qby_A CDC6 homolog 1, cell di 94.2 0.19 6.6E-06 50.7 10.5 18 136-153 45-62 (386)
152 3pfi_A Holliday junction ATP-d 94.2 0.42 1.4E-05 47.4 12.8 17 137-153 56-72 (338)
153 2dr3_A UPF0273 protein PH0284; 94.2 0.26 9E-06 46.2 10.6 51 135-195 22-72 (247)
154 1fnn_A CDC6P, cell division co 94.2 0.061 2.1E-06 54.7 6.5 16 138-153 46-61 (389)
155 3hu3_A Transitional endoplasmi 94.1 0.15 5E-06 53.6 9.3 43 246-288 298-350 (489)
156 2p6n_A ATP-dependent RNA helic 94.1 0.52 1.8E-05 42.5 11.9 71 173-251 54-128 (191)
157 3syl_A Protein CBBX; photosynt 94.1 0.13 4.3E-06 50.5 8.4 17 137-153 68-84 (309)
158 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.19 6.5E-06 46.7 9.1 20 135-154 22-41 (235)
159 3oiy_A Reverse gyrase helicase 93.9 0.2 6.9E-06 51.4 9.9 82 338-420 58-148 (414)
160 4a1f_A DNAB helicase, replicat 93.8 0.021 7.2E-07 56.7 1.9 50 134-193 44-93 (338)
161 2q6t_A DNAB replication FORK h 93.7 0.13 4.4E-06 53.5 8.0 113 136-259 200-324 (444)
162 3pvs_A Replication-associated 93.7 0.11 3.6E-06 54.1 7.2 17 137-153 51-67 (447)
163 1xwi_A SKD1 protein; VPS4B, AA 93.6 1.1 3.9E-05 44.0 14.3 51 97-153 7-62 (322)
164 2r6a_A DNAB helicase, replicat 93.6 0.12 4.2E-06 53.8 7.5 39 135-181 202-240 (454)
165 3cf2_A TER ATPase, transitiona 93.6 0.12 4E-06 57.5 7.6 57 96-153 471-528 (806)
166 1sxj_E Activator 1 40 kDa subu 93.5 0.52 1.8E-05 47.1 11.9 44 243-287 132-175 (354)
167 3dm5_A SRP54, signal recogniti 93.4 0.37 1.3E-05 49.5 10.6 54 244-297 181-235 (443)
168 2qp9_X Vacuolar protein sortin 93.4 0.18 6.1E-06 50.6 8.1 51 97-153 46-101 (355)
169 2hjv_A ATP-dependent RNA helic 93.2 0.38 1.3E-05 42.1 9.2 73 173-253 35-111 (163)
170 1njg_A DNA polymerase III subu 93.1 0.63 2.2E-05 43.1 11.2 16 138-153 47-62 (250)
171 3hjh_A Transcription-repair-co 93.0 0.45 1.5E-05 49.7 10.7 85 136-234 14-115 (483)
172 3uk6_A RUVB-like 2; hexameric 92.8 0.99 3.4E-05 45.2 12.8 17 137-153 71-87 (368)
173 2zan_A Vacuolar protein sortin 92.7 0.14 4.7E-06 53.3 6.3 55 96-153 128-184 (444)
174 2rb4_A ATP-dependent RNA helic 92.7 0.51 1.7E-05 41.8 9.3 71 173-251 34-108 (175)
175 1fuk_A Eukaryotic initiation f 92.5 0.5 1.7E-05 41.3 8.8 73 173-253 30-106 (165)
176 1sxj_C Activator 1 40 kDa subu 92.3 0.42 1.4E-05 47.5 9.1 39 244-283 109-147 (340)
177 1hqc_A RUVB; extended AAA-ATPa 92.2 0.41 1.4E-05 47.1 8.9 18 136-153 38-55 (324)
178 1n0w_A DNA repair protein RAD5 92.1 0.39 1.3E-05 44.9 8.3 22 135-156 23-44 (243)
179 2gno_A DNA polymerase III, gam 92.0 0.54 1.9E-05 45.9 9.2 40 243-283 80-119 (305)
180 3d8b_A Fidgetin-like protein 1 92.0 0.58 2E-05 46.9 9.7 53 98-153 80-134 (357)
181 3eaq_A Heat resistant RNA depe 92.0 0.56 1.9E-05 43.1 8.8 71 173-251 31-105 (212)
182 1sxj_B Activator 1 37 kDa subu 91.7 0.44 1.5E-05 46.7 8.4 38 245-283 107-144 (323)
183 1w5s_A Origin recognition comp 91.6 0.27 9.1E-06 50.3 6.9 17 137-153 51-69 (412)
184 1sxj_A Activator 1 95 kDa subu 91.6 0.33 1.1E-05 51.5 7.7 42 244-287 147-190 (516)
185 3bh0_A DNAB-like replicative h 91.6 0.35 1.2E-05 47.6 7.4 52 133-194 65-116 (315)
186 3cmu_A Protein RECA, recombina 91.5 0.4 1.4E-05 58.3 9.0 44 130-182 1415-1464(2050)
187 3i5x_A ATP-dependent RNA helic 91.5 1.4 4.6E-05 47.2 12.7 75 173-253 339-418 (563)
188 1t5i_A C_terminal domain of A 91.5 1.3 4.6E-05 38.9 10.6 73 173-253 31-107 (172)
189 3b9p_A CG5977-PA, isoform A; A 91.5 0.64 2.2E-05 45.1 9.2 54 97-153 16-71 (297)
190 2cvh_A DNA repair and recombin 91.5 0.58 2E-05 42.9 8.5 22 135-156 19-40 (220)
191 2ehv_A Hypothetical protein PH 91.3 0.17 5.7E-06 47.8 4.6 43 244-286 134-181 (251)
192 2l8b_A Protein TRAI, DNA helic 91.0 0.3 1E-05 43.1 5.4 121 122-285 35-158 (189)
193 2jgn_A DBX, DDX3, ATP-dependen 90.9 0.54 1.9E-05 42.1 7.4 71 173-251 46-120 (185)
194 2zr9_A Protein RECA, recombina 90.8 0.69 2.4E-05 46.1 8.8 38 135-181 60-97 (349)
195 2fna_A Conserved hypothetical 90.8 4.3 0.00015 39.9 14.9 53 228-285 123-178 (357)
196 1lv7_A FTSH; alpha/beta domain 90.8 2.1 7.1E-05 40.4 11.9 53 98-153 8-62 (257)
197 4ddu_A Reverse gyrase; topoiso 90.8 0.52 1.8E-05 54.7 8.9 81 339-420 116-205 (1104)
198 3sqw_A ATP-dependent RNA helic 90.7 1.8 6.2E-05 46.4 12.7 75 173-253 288-367 (579)
199 2eyq_A TRCF, transcription-rep 90.5 0.88 3E-05 53.1 10.5 98 324-421 631-735 (1151)
200 1cr0_A DNA primase/helicase; R 90.5 0.17 5.9E-06 49.3 4.0 22 133-154 32-53 (296)
201 3t15_A Ribulose bisphosphate c 90.4 0.35 1.2E-05 47.0 6.1 17 137-153 37-53 (293)
202 2chq_A Replication factor C sm 90.2 0.31 1.1E-05 47.8 5.6 16 138-153 40-55 (319)
203 3bgw_A DNAB-like replicative h 90.2 0.27 9.4E-06 50.9 5.4 49 135-193 196-244 (444)
204 1jr3_A DNA polymerase III subu 89.9 0.96 3.3E-05 45.3 9.1 16 138-153 40-55 (373)
205 2zts_A Putative uncharacterize 89.7 0.29 9.9E-06 46.0 4.8 52 136-196 30-81 (251)
206 1ls1_A Signal recognition part 89.2 2.1 7.2E-05 41.4 10.5 45 244-288 179-224 (295)
207 2ce7_A Cell division protein F 89.0 0.6 2E-05 48.6 6.8 51 98-153 12-66 (476)
208 1nlf_A Regulatory protein REPA 88.9 1.1 3.6E-05 43.1 8.2 25 132-156 26-50 (279)
209 1xp8_A RECA protein, recombina 88.8 2.8 9.7E-05 41.9 11.4 39 135-182 73-111 (366)
210 2i4i_A ATP-dependent RNA helic 88.8 1.9 6.7E-05 43.7 10.6 72 172-251 275-350 (417)
211 3hr8_A Protein RECA; alpha and 88.8 2.2 7.5E-05 42.4 10.5 39 136-183 61-99 (356)
212 3i32_A Heat resistant RNA depe 88.7 1.1 3.6E-05 43.7 8.0 71 173-251 28-102 (300)
213 3ney_A 55 kDa erythrocyte memb 87.7 2.4 8.4E-05 38.1 9.1 18 135-152 18-35 (197)
214 2d7d_A Uvrabc system protein B 87.6 3.5 0.00012 44.9 12.1 77 173-257 445-525 (661)
215 1u94_A RECA protein, recombina 87.4 1.2 4E-05 44.5 7.5 38 135-181 62-99 (356)
216 2px0_A Flagellar biosynthesis 87.2 2.7 9.3E-05 40.7 9.9 42 244-287 181-225 (296)
217 1t6n_A Probable ATP-dependent 87.0 2.9 9.8E-05 38.2 9.6 74 345-421 83-168 (220)
218 3cf2_A TER ATPase, transitiona 86.4 1.1 3.7E-05 49.7 7.2 41 245-285 297-347 (806)
219 3pxi_A Negative regulator of g 86.3 0.54 1.8E-05 52.5 4.8 16 138-153 523-538 (758)
220 3m6a_A ATP-dependent protease 86.0 0.83 2.8E-05 48.7 5.9 19 135-153 107-125 (543)
221 2z43_A DNA repair and recombin 85.9 2.2 7.4E-05 42.0 8.6 22 136-157 107-128 (324)
222 2qen_A Walker-type ATPase; unk 85.5 2.1 7.1E-05 42.3 8.3 17 136-152 31-47 (350)
223 3io5_A Recombination and repai 85.5 3.5 0.00012 40.1 9.4 42 138-186 30-71 (333)
224 3fht_A ATP-dependent RNA helic 85.4 2.4 8.2E-05 42.9 9.0 71 173-251 266-340 (412)
225 1yks_A Genome polyprotein [con 85.4 1.1 3.8E-05 46.3 6.4 69 173-250 177-245 (440)
226 3pey_A ATP-dependent RNA helic 84.8 2.7 9.2E-05 42.2 9.0 75 173-255 243-321 (395)
227 1vma_A Cell division protein F 84.6 9.5 0.00033 36.9 12.3 18 137-154 105-122 (306)
228 1c4o_A DNA nucleotide excision 84.3 5.1 0.00017 43.7 11.3 77 173-257 439-519 (664)
229 3fe2_A Probable ATP-dependent 84.1 11 0.00038 34.8 12.3 74 344-421 102-186 (242)
230 1hv8_A Putative ATP-dependent 84.0 2.7 9.3E-05 41.6 8.5 72 173-252 238-313 (367)
231 2db3_A ATP-dependent RNA helic 83.8 2.9 9.8E-05 43.0 8.7 69 175-251 302-374 (434)
232 3lda_A DNA repair protein RAD5 83.7 3.6 0.00012 41.7 9.1 18 137-154 179-196 (400)
233 3cmu_A Protein RECA, recombina 83.4 2.5 8.5E-05 51.6 8.8 48 133-190 1078-1125(2050)
234 1qvr_A CLPB protein; coiled co 83.4 2.5 8.4E-05 47.8 8.6 17 137-153 192-208 (854)
235 1q57_A DNA primase/helicase; d 83.3 1.1 3.8E-05 47.2 5.4 52 133-193 239-290 (503)
236 3cmw_A Protein RECA, recombina 83.3 2.3 7.7E-05 51.1 8.4 39 135-182 33-71 (1706)
237 1xti_A Probable ATP-dependent 83.2 2.7 9.4E-05 42.1 8.2 74 173-254 250-327 (391)
238 2j0s_A ATP-dependent RNA helic 82.9 3.4 0.00012 41.8 8.8 71 173-251 276-350 (410)
239 2i1q_A DNA repair and recombin 82.3 1.5 5.1E-05 43.1 5.6 23 136-158 98-120 (322)
240 1wrb_A DJVLGB; RNA helicase, D 82.1 15 0.00052 34.1 12.5 73 345-421 101-184 (253)
241 2ffh_A Protein (FFH); SRP54, s 82.0 10 0.00036 38.5 11.8 52 244-295 179-231 (425)
242 1s2m_A Putative ATP-dependent 82.0 3.4 0.00012 41.7 8.3 71 173-251 258-332 (400)
243 2v6i_A RNA helicase; membrane, 81.5 2.8 9.4E-05 43.1 7.4 68 173-249 171-238 (431)
244 1v5w_A DMC1, meiotic recombina 81.4 2.6 9E-05 41.8 7.0 51 129-182 110-165 (343)
245 2wv9_A Flavivirin protease NS2 81.3 2.4 8.4E-05 46.2 7.2 68 173-250 410-478 (673)
246 1oyw_A RECQ helicase, ATP-depe 81.0 4.7 0.00016 42.6 9.2 76 343-418 64-146 (523)
247 2gxq_A Heat resistant RNA depe 80.8 9.2 0.00031 34.1 10.1 75 343-421 71-154 (207)
248 3ber_A Probable ATP-dependent 80.6 8.5 0.00029 35.9 10.0 74 344-421 111-196 (249)
249 3e70_C DPA, signal recognition 80.5 19 0.00064 35.3 12.7 53 245-297 211-264 (328)
250 2oxc_A Probable ATP-dependent 80.2 3.5 0.00012 38.0 7.0 72 344-420 92-175 (230)
251 2yjt_D ATP-dependent RNA helic 81.1 0.35 1.2E-05 42.6 0.0 72 173-252 30-105 (170)
252 2jlq_A Serine protease subunit 79.5 3.3 0.00011 42.8 7.2 69 173-250 188-256 (451)
253 2v1x_A ATP-dependent DNA helic 79.3 5.1 0.00018 43.0 8.9 59 343-401 83-144 (591)
254 1ypw_A Transitional endoplasmi 79.0 6.2 0.00021 44.1 9.7 19 135-153 237-255 (806)
255 1wp9_A ATP-dependent RNA helic 78.9 9.1 0.00031 39.3 10.6 75 173-255 361-447 (494)
256 2dhr_A FTSH; AAA+ protein, hex 78.3 5 0.00017 41.9 8.1 54 97-153 26-81 (499)
257 1e9r_A Conjugal transfer prote 78.1 1.8 6.3E-05 44.5 4.8 43 136-187 53-95 (437)
258 1r6b_X CLPA protein; AAA+, N-t 77.3 12 0.0004 41.6 11.4 18 136-153 207-224 (758)
259 2oca_A DAR protein, ATP-depend 77.3 24 0.00082 36.7 13.4 76 173-255 347-426 (510)
260 2j37_W Signal recognition part 77.0 20 0.00067 37.4 12.2 17 138-154 103-119 (504)
261 3hws_A ATP-dependent CLP prote 76.9 4.3 0.00015 40.5 7.0 19 135-153 50-68 (363)
262 3u4q_B ATP-dependent helicase/ 76.9 6.2 0.00021 46.3 9.3 87 139-255 4-91 (1166)
263 3bor_A Human initiation factor 76.9 8.1 0.00028 35.7 8.5 75 343-420 97-182 (237)
264 3iuy_A Probable ATP-dependent 76.6 4.9 0.00017 36.9 6.9 75 343-421 93-177 (228)
265 2pl3_A Probable ATP-dependent 76.5 17 0.00059 33.2 10.8 74 343-421 96-181 (236)
266 1vec_A ATP-dependent RNA helic 76.2 7.6 0.00026 34.7 8.0 73 344-420 71-155 (206)
267 1j8m_F SRP54, signal recogniti 75.6 15 0.00052 35.3 10.3 18 137-154 99-116 (297)
268 2z0m_A 337AA long hypothetical 75.4 6.3 0.00022 38.3 7.7 69 172-252 219-291 (337)
269 1gku_B Reverse gyrase, TOP-RG; 74.9 6.8 0.00023 45.3 8.8 76 343-420 98-184 (1054)
270 3cmw_A Protein RECA, recombina 74.8 7.9 0.00027 46.6 9.3 44 137-189 1432-1475(1706)
271 2whx_A Serine protease/ntpase/ 74.7 6.2 0.00021 42.5 7.9 69 173-250 355-423 (618)
272 3b85_A Phosphate starvation-in 73.9 3 0.0001 38.0 4.5 34 119-152 5-38 (208)
273 1p9r_A General secretion pathw 73.7 3.7 0.00013 41.8 5.6 36 124-160 153-190 (418)
274 2xau_A PRE-mRNA-splicing facto 73.4 11 0.00037 41.9 9.7 73 173-251 303-393 (773)
275 2pk2_A Cyclin-T1, protein TAT; 73.3 0.7 2.4E-05 46.2 0.0 7 457-463 240-246 (358)
276 1pzn_A RAD51, DNA repair and r 72.8 14 0.00048 36.5 9.5 26 129-154 119-149 (349)
277 3ly5_A ATP-dependent RNA helic 72.5 21 0.00073 33.4 10.4 74 343-420 125-210 (262)
278 1qde_A EIF4A, translation init 72.4 4.1 0.00014 37.2 5.2 73 343-420 81-164 (224)
279 2va8_A SSO2462, SKI2-type heli 72.3 10 0.00034 41.7 9.1 73 173-251 252-362 (715)
280 1sky_E F1-ATPase, F1-ATP synth 71.9 18 0.0006 37.3 10.0 23 131-153 146-168 (473)
281 1tue_A Replication protein E1; 71.3 5.8 0.0002 35.9 5.6 50 108-160 28-81 (212)
282 3o8b_A HCV NS3 protease/helica 71.3 5 0.00017 43.4 6.1 66 173-250 396-461 (666)
283 1tf7_A KAIC; homohexamer, hexa 71.2 15 0.00051 38.7 9.8 128 133-286 278-417 (525)
284 1um8_A ATP-dependent CLP prote 70.9 7.3 0.00025 38.9 7.0 18 136-153 72-89 (376)
285 4f4c_A Multidrug resistance pr 70.8 2.6 9E-05 50.0 4.1 18 134-151 1103-1120(1321)
286 3eiq_A Eukaryotic initiation f 69.7 3.1 0.00011 42.1 4.0 71 173-251 280-354 (414)
287 4ag6_A VIRB4 ATPase, type IV s 68.7 4.4 0.00015 40.9 4.8 41 135-184 34-74 (392)
288 2x8a_A Nuclear valosin-contain 68.5 1.6 5.5E-05 41.8 1.4 54 97-153 5-61 (274)
289 2r8r_A Sensor protein; KDPD, P 68.5 5 0.00017 36.9 4.6 24 138-161 8-31 (228)
290 1ofh_A ATP-dependent HSL prote 67.7 11 0.00037 36.2 7.3 18 136-153 50-67 (310)
291 2bjv_A PSP operon transcriptio 67.3 4.3 0.00015 38.3 4.2 20 134-153 27-46 (265)
292 1q0u_A Bstdead; DEAD protein, 66.9 3.9 0.00013 37.3 3.7 73 344-420 72-159 (219)
293 1u0j_A DNA replication protein 66.8 10 0.00034 35.9 6.4 43 108-153 73-121 (267)
294 4dzz_A Plasmid partitioning pr 66.6 9.7 0.00033 34.0 6.3 32 222-256 55-86 (206)
295 3b5x_A Lipid A export ATP-bind 66.5 6.3 0.00022 42.2 5.7 40 243-282 496-535 (582)
296 2oap_1 GSPE-2, type II secreti 66.3 7.9 0.00027 40.6 6.2 38 113-152 238-276 (511)
297 1fuu_A Yeast initiation factor 66.1 13 0.00044 37.1 7.7 73 343-420 88-171 (394)
298 2z83_A Helicase/nucleoside tri 65.9 4.3 0.00015 42.1 4.1 69 173-250 190-258 (459)
299 4a2p_A RIG-I, retinoic acid in 65.8 15 0.00053 38.5 8.7 74 344-421 55-140 (556)
300 3nbx_X ATPase RAVA; AAA+ ATPas 65.2 7.1 0.00024 40.8 5.6 30 124-153 29-58 (500)
301 1z6t_A APAF-1, apoptotic prote 62.9 23 0.00079 37.7 9.4 32 123-154 129-165 (591)
302 2r44_A Uncharacterized protein 62.9 3.9 0.00013 40.1 3.0 23 131-153 41-63 (331)
303 3rc3_A ATP-dependent RNA helic 62.6 19 0.00065 39.2 8.5 73 176-257 323-401 (677)
304 3dkp_A Probable ATP-dependent 62.3 4.4 0.00015 37.7 3.1 75 344-421 98-185 (245)
305 3vaa_A Shikimate kinase, SK; s 62.0 4.6 0.00016 36.2 3.1 19 135-153 24-42 (199)
306 4a2q_A RIG-I, retinoic acid in 61.8 14 0.00047 41.3 7.5 73 173-251 631-718 (797)
307 1z5z_A Helicase of the SNF2/RA 61.6 41 0.0014 31.7 9.9 92 144-251 92-189 (271)
308 1ojl_A Transcriptional regulat 61.5 4.7 0.00016 39.1 3.2 19 135-153 24-42 (304)
309 3nwn_A Kinesin-like protein KI 60.8 5.9 0.0002 39.3 3.8 26 128-153 95-122 (359)
310 3iij_A Coilin-interacting nucl 60.7 4.8 0.00016 35.3 2.9 20 134-153 9-28 (180)
311 1ixz_A ATP-dependent metallopr 60.2 4.4 0.00015 37.9 2.7 54 97-153 11-66 (254)
312 3fmp_B ATP-dependent RNA helic 59.8 1.9 6.4E-05 45.0 0.0 70 173-250 333-406 (479)
313 3tbk_A RIG-I helicase domain; 59.6 19 0.00066 37.7 8.0 73 173-251 389-476 (555)
314 4gl2_A Interferon-induced heli 59.5 5.4 0.00018 43.8 3.6 72 173-250 400-487 (699)
315 1qhx_A CPT, protein (chloramph 59.5 4.3 0.00015 35.5 2.3 17 137-153 4-20 (178)
316 3a8t_A Adenylate isopentenyltr 59.3 4.9 0.00017 39.4 2.9 17 137-153 41-57 (339)
317 3fmo_B ATP-dependent RNA helic 59.0 14 0.00048 35.5 6.2 70 345-421 163-245 (300)
318 2gza_A Type IV secretion syste 58.2 6.4 0.00022 39.3 3.6 20 132-151 171-190 (361)
319 3trf_A Shikimate kinase, SK; a 57.8 5.6 0.00019 34.9 2.9 19 136-154 5-23 (185)
320 2qmh_A HPR kinase/phosphorylas 57.7 5.8 0.0002 35.7 2.8 18 136-153 34-51 (205)
321 1bg2_A Kinesin; motor protein, 57.7 7.4 0.00025 38.0 3.9 26 128-153 68-95 (325)
322 2eyu_A Twitching motility prot 57.5 5 0.00017 37.9 2.5 20 133-152 22-41 (261)
323 3jvv_A Twitching mobility prot 57.3 6.1 0.00021 39.3 3.3 26 135-161 122-147 (356)
324 2p6r_A Afuhel308 helicase; pro 57.2 14 0.00048 40.5 6.5 73 173-251 242-346 (702)
325 3ice_A Transcription terminati 57.1 10 0.00035 38.0 4.7 32 122-153 157-191 (422)
326 4f4c_A Multidrug resistance pr 56.9 4.3 0.00015 48.2 2.4 41 243-283 570-610 (1321)
327 3lw7_A Adenylate kinase relate 56.8 4.7 0.00016 34.8 2.2 16 138-153 3-18 (179)
328 1kgd_A CASK, peripheral plasma 56.5 6.5 0.00022 34.5 3.0 18 135-152 4-21 (180)
329 1y63_A LMAJ004144AAA protein; 56.5 5.3 0.00018 35.3 2.4 19 135-153 9-27 (184)
330 1t5c_A CENP-E protein, centrom 56.0 7.2 0.00025 38.6 3.5 26 128-153 68-95 (349)
331 1f9v_A Kinesin-like protein KA 55.8 7.9 0.00027 38.2 3.7 26 128-153 75-102 (347)
332 3gbj_A KIF13B protein; kinesin 55.8 7.2 0.00025 38.6 3.5 26 128-153 83-110 (354)
333 3t0q_A AGR253WP; kinesin, alph 55.7 7.8 0.00027 38.3 3.7 26 128-153 76-103 (349)
334 1v8k_A Kinesin-like protein KI 55.6 7.8 0.00027 39.1 3.7 27 128-154 145-173 (410)
335 2zfi_A Kinesin-like protein KI 55.5 7.5 0.00025 38.7 3.5 26 128-153 80-107 (366)
336 2zj8_A DNA helicase, putative 55.5 18 0.00063 39.7 7.1 72 173-250 237-343 (720)
337 1kht_A Adenylate kinase; phosp 55.4 5.4 0.00018 35.2 2.3 18 136-153 3-20 (192)
338 2nr8_A Kinesin-like protein KI 55.3 8.3 0.00029 38.2 3.8 26 128-153 94-121 (358)
339 4a14_A Kinesin, kinesin-like p 55.3 8.5 0.00029 38.0 3.9 26 128-153 74-101 (344)
340 3b6u_A Kinesin-like protein KI 55.2 8.4 0.00029 38.4 3.8 26 128-153 92-119 (372)
341 2vvg_A Kinesin-2; motor protei 55.1 8.6 0.00029 38.0 3.9 26 128-153 80-107 (350)
342 2h58_A Kinesin-like protein KI 55.1 8.6 0.0003 37.7 3.9 26 128-153 71-98 (330)
343 1iy2_A ATP-dependent metallopr 55.0 5.7 0.00019 37.8 2.5 54 97-153 35-90 (278)
344 3h1t_A Type I site-specific re 54.9 11 0.00038 40.2 5.1 77 173-255 439-527 (590)
345 2ze6_A Isopentenyl transferase 54.8 6.5 0.00022 36.9 2.9 16 138-153 3-18 (253)
346 1goj_A Kinesin, kinesin heavy 54.8 8.7 0.0003 38.1 3.8 26 128-153 71-98 (355)
347 3exa_A TRNA delta(2)-isopenten 54.8 6 0.0002 38.4 2.6 16 138-153 5-20 (322)
348 3dc4_A Kinesin-like protein NO 54.7 7.4 0.00025 38.4 3.3 25 129-153 86-112 (344)
349 1x88_A Kinesin-like protein KI 54.6 7.1 0.00024 38.8 3.2 26 128-153 79-106 (359)
350 3lre_A Kinesin-like protein KI 54.5 8.8 0.0003 38.0 3.8 25 129-153 97-123 (355)
351 2r62_A Cell division protease 54.5 2.9 9.9E-05 39.6 0.3 18 136-153 44-61 (268)
352 4etp_A Kinesin-like protein KA 54.1 9.4 0.00032 38.6 4.0 25 129-153 132-158 (403)
353 2y65_A Kinesin, kinesin heavy 54.1 9.1 0.00031 38.1 3.9 26 128-153 75-102 (365)
354 3foz_A TRNA delta(2)-isopenten 53.9 6.9 0.00024 37.9 2.9 16 138-153 12-27 (316)
355 2r2a_A Uncharacterized protein 53.8 8.2 0.00028 34.7 3.2 17 138-154 7-23 (199)
356 1zp6_A Hypothetical protein AT 53.2 5.8 0.0002 35.0 2.1 19 134-152 7-25 (191)
357 4a2w_A RIG-I, retinoic acid in 52.6 15 0.00053 41.7 6.0 74 173-252 631-719 (936)
358 2pt7_A CAG-ALFA; ATPase, prote 52.6 6.2 0.00021 38.8 2.4 19 133-151 168-186 (330)
359 2wbe_C Bipolar kinesin KRP-130 52.5 7.4 0.00025 38.9 2.9 26 128-153 91-118 (373)
360 2qor_A Guanylate kinase; phosp 52.4 8.1 0.00028 34.7 3.0 21 133-153 9-29 (204)
361 2c9o_A RUVB-like 1; hexameric 52.3 15 0.0005 37.9 5.3 18 136-153 63-80 (456)
362 3kb2_A SPBC2 prophage-derived 52.3 6.2 0.00021 34.0 2.1 16 138-153 3-18 (173)
363 2heh_A KIF2C protein; kinesin, 52.2 9.2 0.00032 38.3 3.6 27 128-154 125-153 (387)
364 1kag_A SKI, shikimate kinase I 52.2 9.6 0.00033 32.9 3.4 18 136-153 4-21 (173)
365 2owm_A Nckin3-434, related to 52.2 8.9 0.0003 39.2 3.5 26 128-153 127-154 (443)
366 2fsf_A Preprotein translocase 52.1 36 0.0012 37.6 8.4 53 343-401 114-171 (853)
367 2j41_A Guanylate kinase; GMP, 52.1 8.2 0.00028 34.5 3.0 20 134-153 4-23 (207)
368 1lvg_A Guanylate kinase, GMP k 51.9 8.8 0.0003 34.3 3.1 18 135-152 3-20 (198)
369 3dmq_A RNA polymerase-associat 51.5 13 0.00045 42.4 5.2 76 173-255 503-584 (968)
370 3tau_A Guanylate kinase, GMP k 51.2 9 0.00031 34.6 3.1 18 136-153 8-25 (208)
371 2ius_A DNA translocase FTSK; n 51.0 12 0.00041 39.1 4.4 25 136-161 167-191 (512)
372 3tr0_A Guanylate kinase, GMP k 50.9 8.8 0.0003 34.3 3.0 18 135-152 6-23 (205)
373 3nwj_A ATSK2; P loop, shikimat 50.5 11 0.00038 35.2 3.7 20 134-153 46-65 (250)
374 1ly1_A Polynucleotide kinase; 50.4 7 0.00024 34.0 2.2 16 138-153 4-19 (181)
375 1m7g_A Adenylylsulfate kinase; 49.9 10 0.00035 34.2 3.3 31 122-153 12-42 (211)
376 2iut_A DNA translocase FTSK; n 49.8 13 0.00044 39.3 4.4 41 137-182 215-255 (574)
377 3crm_A TRNA delta(2)-isopenten 49.8 8.6 0.0003 37.5 2.9 16 138-153 7-22 (323)
378 3b6e_A Interferon-induced heli 49.6 14 0.00046 33.1 4.1 74 344-421 82-172 (216)
379 1zuh_A Shikimate kinase; alpha 49.6 9.3 0.00032 32.9 2.9 17 137-153 8-24 (168)
380 1rj9_A FTSY, signal recognitio 49.5 18 0.00063 34.8 5.2 17 136-152 102-118 (304)
381 3cm0_A Adenylate kinase; ATP-b 49.5 7.1 0.00024 34.3 2.1 18 136-153 4-21 (186)
382 3bfn_A Kinesin-like protein KI 49.3 8.3 0.00029 38.6 2.7 24 130-153 91-116 (388)
383 3fb4_A Adenylate kinase; psych 49.3 7.3 0.00025 35.3 2.2 16 138-153 2-17 (216)
384 3cob_A Kinesin heavy chain-lik 49.2 9.7 0.00033 37.9 3.2 25 129-153 71-97 (369)
385 3sr0_A Adenylate kinase; phosp 49.1 9.5 0.00032 34.5 2.9 18 137-154 1-18 (206)
386 3u06_A Protein claret segregat 49.1 12 0.00041 37.9 3.9 26 128-153 129-156 (412)
387 3dl0_A Adenylate kinase; phosp 48.6 7.6 0.00026 35.2 2.2 16 138-153 2-17 (216)
388 2v54_A DTMP kinase, thymidylat 48.6 7.4 0.00025 34.7 2.1 19 135-153 3-21 (204)
389 2rep_A Kinesin-like protein KI 48.5 12 0.0004 37.4 3.6 25 129-153 107-133 (376)
390 2c95_A Adenylate kinase 1; tra 48.4 9.5 0.00033 33.7 2.8 20 134-153 7-26 (196)
391 1w36_B RECB, exodeoxyribonucle 47.8 25 0.00085 41.2 6.8 59 138-196 18-79 (1180)
392 3fho_A ATP-dependent RNA helic 47.6 4.3 0.00015 42.7 0.3 71 173-251 357-431 (508)
393 1tf5_A Preprotein translocase 47.4 54 0.0018 36.3 8.9 69 343-417 123-209 (844)
394 2ewv_A Twitching motility prot 47.3 8.3 0.00029 38.6 2.4 19 134-152 134-152 (372)
395 2pt5_A Shikimate kinase, SK; a 47.0 8.4 0.00029 33.1 2.1 16 138-153 2-17 (168)
396 1knq_A Gluconate kinase; ALFA/ 46.9 7.7 0.00026 33.7 1.9 18 136-153 8-25 (175)
397 1via_A Shikimate kinase; struc 46.8 12 0.00041 32.5 3.1 16 138-153 6-21 (175)
398 2yvu_A Probable adenylyl-sulfa 46.7 19 0.00065 31.5 4.5 18 136-153 13-30 (186)
399 1zu4_A FTSY; GTPase, signal re 46.3 19 0.00066 35.0 4.8 18 137-154 106-123 (320)
400 3d3q_A TRNA delta(2)-isopenten 46.3 11 0.00036 37.1 2.9 16 138-153 9-24 (340)
401 2r2a_A Uncharacterized protein 46.0 12 0.00041 33.6 3.0 39 246-285 88-132 (199)
402 1z6g_A Guanylate kinase; struc 45.8 13 0.00046 33.7 3.4 19 133-151 20-38 (218)
403 2rhm_A Putative kinase; P-loop 45.7 9 0.00031 33.8 2.1 17 137-153 6-22 (193)
404 1tev_A UMP-CMP kinase; ploop, 45.4 8.1 0.00028 34.1 1.8 17 137-153 4-20 (196)
405 4gp7_A Metallophosphoesterase; 45.3 7.2 0.00025 34.0 1.4 19 135-153 8-26 (171)
406 4eun_A Thermoresistant glucoki 45.0 13 0.00044 33.2 3.1 18 136-153 29-46 (200)
407 2v3c_C SRP54, signal recogniti 44.8 17 0.00059 37.1 4.3 19 137-155 100-118 (432)
408 3t61_A Gluconokinase; PSI-biol 44.7 9.5 0.00033 34.1 2.2 17 137-153 19-35 (202)
409 1e6c_A Shikimate kinase; phosp 44.5 11 0.00037 32.5 2.5 17 137-153 3-19 (173)
410 1znw_A Guanylate kinase, GMP k 44.0 14 0.00047 33.2 3.1 21 132-152 16-36 (207)
411 1ye8_A Protein THEP1, hypothet 44.0 13 0.00044 32.6 2.9 15 138-152 2-16 (178)
412 1zd8_A GTP:AMP phosphotransfer 43.9 10 0.00035 34.7 2.3 18 136-153 7-24 (227)
413 3tlx_A Adenylate kinase 2; str 43.6 15 0.00051 34.0 3.4 19 135-153 28-46 (243)
414 1g41_A Heat shock protein HSLU 43.5 54 0.0019 33.4 7.7 18 136-153 50-67 (444)
415 3a00_A Guanylate kinase, GMP k 43.4 15 0.00051 32.3 3.2 15 138-152 3-17 (186)
416 3b9q_A Chloroplast SRP recepto 43.4 16 0.00056 35.2 3.7 17 136-152 100-116 (302)
417 4fcw_A Chaperone protein CLPB; 43.3 12 0.00041 36.0 2.8 16 138-153 49-64 (311)
418 2iyv_A Shikimate kinase, SK; t 43.1 12 0.0004 32.8 2.5 17 137-153 3-19 (184)
419 2cdn_A Adenylate kinase; phosp 43.1 12 0.00039 33.5 2.5 17 137-153 21-37 (201)
420 1nks_A Adenylate kinase; therm 43.0 10 0.00035 33.3 2.1 16 138-153 3-18 (194)
421 4akg_A Glutathione S-transfera 42.9 25 0.00085 44.6 6.0 47 107-154 891-941 (2695)
422 1nij_A Hypothetical protein YJ 42.8 22 0.00074 34.5 4.6 14 138-151 6-19 (318)
423 1in4_A RUVB, holliday junction 42.8 14 0.00047 36.3 3.1 17 137-153 52-68 (334)
424 1e4v_A Adenylate kinase; trans 42.7 13 0.00045 33.5 2.8 16 138-153 2-17 (214)
425 2bdt_A BH3686; alpha-beta prot 42.7 14 0.00047 32.5 2.9 16 138-153 4-19 (189)
426 2plr_A DTMP kinase, probable t 42.4 9.6 0.00033 34.1 1.8 18 136-153 4-21 (213)
427 3eph_A TRNA isopentenyltransfe 42.4 13 0.00043 37.5 2.8 16 138-153 4-19 (409)
428 2qt1_A Nicotinamide riboside k 42.4 8.2 0.00028 34.7 1.3 22 132-153 17-38 (207)
429 3uie_A Adenylyl-sulfate kinase 42.1 13 0.00044 33.2 2.6 19 135-153 24-42 (200)
430 3pxg_A Negative regulator of g 42.1 18 0.00061 37.4 4.0 18 136-153 201-218 (468)
431 1f2t_A RAD50 ABC-ATPase; DNA d 42.1 18 0.00062 30.6 3.4 14 139-152 26-39 (149)
432 2ykg_A Probable ATP-dependent 41.9 44 0.0015 36.3 7.4 74 345-422 62-147 (696)
433 3gk5_A Uncharacterized rhodane 41.6 25 0.00086 27.6 4.0 45 334-378 45-90 (108)
434 2bwj_A Adenylate kinase 5; pho 41.5 11 0.00036 33.4 2.0 18 136-153 12-29 (199)
435 1aky_A Adenylate kinase; ATP:A 41.4 16 0.00054 33.1 3.1 18 136-153 4-21 (220)
436 1jr3_D DNA polymerase III, del 41.1 36 0.0012 33.2 6.0 56 230-287 62-118 (343)
437 1xjc_A MOBB protein homolog; s 41.1 31 0.0011 29.9 4.8 23 138-161 6-28 (169)
438 3f9v_A Minichromosome maintena 41.0 15 0.0005 39.4 3.2 16 138-153 329-344 (595)
439 1zak_A Adenylate kinase; ATP:A 40.9 17 0.00057 33.0 3.2 17 137-153 6-22 (222)
440 1ex7_A Guanylate kinase; subst 40.9 12 0.00042 33.1 2.2 15 137-151 2-16 (186)
441 2ck3_A ATP synthase subunit al 40.7 2.3E+02 0.008 29.2 11.9 68 127-195 150-222 (510)
442 2ipc_A Preprotein translocase 40.7 62 0.0021 36.2 7.9 53 343-401 119-176 (997)
443 1ak2_A Adenylate kinase isoenz 40.6 16 0.00054 33.6 3.0 18 136-153 16-33 (233)
444 1g8p_A Magnesium-chelatase 38 40.6 8.7 0.0003 37.8 1.3 18 136-153 45-62 (350)
445 2pez_A Bifunctional 3'-phospho 40.6 11 0.00039 32.8 1.9 18 136-153 5-22 (179)
446 1gvn_B Zeta; postsegregational 40.5 11 0.00038 36.1 2.0 16 138-153 35-50 (287)
447 1byi_A Dethiobiotin synthase; 40.5 30 0.001 31.2 5.0 33 140-181 6-38 (224)
448 3bs4_A Uncharacterized protein 40.3 38 0.0013 31.7 5.6 57 130-196 10-71 (260)
449 2jaq_A Deoxyguanosine kinase; 40.3 15 0.00052 32.5 2.8 16 138-153 2-17 (205)
450 3k1j_A LON protease, ATP-depen 39.9 23 0.00078 38.0 4.5 23 131-153 55-77 (604)
451 4a74_A DNA repair and recombin 39.9 12 0.00041 34.0 2.1 19 135-153 24-42 (231)
452 1qf9_A UMP/CMP kinase, protein 39.6 16 0.00055 32.0 2.8 16 138-153 8-23 (194)
453 2vli_A Antibiotic resistance p 39.5 11 0.00037 32.9 1.6 18 136-153 5-22 (183)
454 3mm4_A Histidine kinase homolo 39.5 1.9E+02 0.0066 25.2 13.4 127 136-286 20-161 (206)
455 3zq6_A Putative arsenical pump 39.5 27 0.00094 33.9 4.7 33 139-180 17-49 (324)
456 2if2_A Dephospho-COA kinase; a 39.4 13 0.00043 33.2 2.1 16 138-153 3-18 (204)
457 1nkt_A Preprotein translocase 39.4 74 0.0025 35.5 8.4 69 343-417 151-237 (922)
458 3c8u_A Fructokinase; YP_612366 39.2 20 0.00067 32.2 3.4 17 136-152 22-38 (208)
459 1z63_A Helicase of the SNF2/RA 39.1 78 0.0027 32.6 8.6 76 173-255 341-422 (500)
460 2w00_A HSDR, R.ECOR124I; ATP-b 39.1 1.1E+02 0.0037 35.1 10.1 25 173-197 537-561 (1038)
461 1ukz_A Uridylate kinase; trans 39.1 13 0.00045 33.0 2.2 16 138-153 17-32 (203)
462 1jjv_A Dephospho-COA kinase; P 38.8 13 0.00046 33.2 2.2 16 138-153 4-19 (206)
463 2wwf_A Thymidilate kinase, put 38.7 13 0.00043 33.4 2.0 19 135-153 9-27 (212)
464 3be4_A Adenylate kinase; malar 38.5 17 0.00059 32.9 2.9 17 137-153 6-22 (217)
465 1nn5_A Similar to deoxythymidy 38.5 14 0.00048 33.1 2.3 19 135-153 8-26 (215)
466 2og2_A Putative signal recogni 38.3 26 0.00088 34.7 4.3 16 138-153 159-174 (359)
467 3umf_A Adenylate kinase; rossm 38.2 17 0.0006 33.0 2.8 17 137-153 30-46 (217)
468 3vkg_A Dynein heavy chain, cyt 38.1 57 0.002 42.0 8.1 47 107-154 874-924 (3245)
469 1ypw_A Transitional endoplasmi 38.0 7.6 0.00026 43.4 0.4 19 135-153 510-528 (806)
470 3kta_A Chromosome segregation 37.9 19 0.00065 31.3 3.0 15 138-152 28-42 (182)
471 2pbr_A DTMP kinase, thymidylat 37.8 14 0.00048 32.4 2.1 16 138-153 2-17 (195)
472 2xb4_A Adenylate kinase; ATP-b 37.7 14 0.00048 33.7 2.1 16 138-153 2-17 (223)
473 1cke_A CK, MSSA, protein (cyti 37.2 18 0.00062 32.7 2.9 17 137-153 6-22 (227)
474 1s96_A Guanylate kinase, GMP k 37.2 20 0.00068 32.6 3.1 19 133-151 13-31 (219)
475 2z0h_A DTMP kinase, thymidylat 37.0 15 0.00051 32.4 2.2 15 139-153 3-17 (197)
476 3oaa_A ATP synthase subunit al 36.9 2.2E+02 0.0074 29.4 10.9 26 128-153 151-179 (513)
477 1ry6_A Internal kinesin; kines 36.8 20 0.00068 35.5 3.2 19 135-153 82-102 (360)
478 2r9v_A ATP synthase subunit al 36.5 1.2E+02 0.0041 31.4 9.0 28 127-154 163-193 (515)
479 4ag6_A VIRB4 ATPase, type IV s 36.5 23 0.0008 35.4 3.8 41 245-285 262-306 (392)
480 3lnc_A Guanylate kinase, GMP k 36.4 11 0.00036 34.7 1.1 20 133-152 24-43 (231)
481 3g5j_A Putative ATP/GTP bindin 36.3 48 0.0017 26.8 5.2 43 337-379 81-126 (134)
482 3mwy_W Chromo domain-containin 36.3 1.5E+02 0.0052 32.8 10.7 92 146-254 554-652 (800)
483 2f1r_A Molybdopterin-guanine d 36.2 14 0.00048 32.2 1.8 16 138-153 4-19 (171)
484 3ug7_A Arsenical pump-driving 36.1 32 0.0011 33.9 4.6 33 139-180 29-61 (349)
485 3l9o_A ATP-dependent RNA helic 36.0 41 0.0014 39.0 6.1 73 338-421 221-300 (1108)
486 2v9p_A Replication protein E1; 35.1 20 0.00068 34.6 2.8 18 134-151 124-141 (305)
487 2vhj_A Ntpase P4, P4; non- hyd 35.0 23 0.00079 34.4 3.2 22 135-156 122-143 (331)
488 4a4z_A Antiviral helicase SKI2 34.9 1.1E+02 0.0037 35.0 9.3 76 173-255 336-452 (997)
489 1c9k_A COBU, adenosylcobinamid 34.9 21 0.00073 31.3 2.7 15 139-153 2-16 (180)
490 3dmn_A Putative DNA helicase; 34.7 2.2E+02 0.0074 24.3 11.2 63 344-421 61-124 (174)
491 1np6_A Molybdopterin-guanine d 34.6 30 0.001 30.1 3.7 22 138-160 8-29 (174)
492 1uf9_A TT1252 protein; P-loop, 34.4 21 0.00073 31.5 2.8 16 138-153 10-25 (203)
493 2i3b_A HCR-ntpase, human cance 34.4 26 0.00088 31.1 3.3 41 243-286 103-145 (189)
494 1z3i_X Similar to RAD54-like; 34.3 1.8E+02 0.006 31.2 10.6 92 146-253 397-495 (644)
495 1ihu_A Arsenical pump-driving 34.0 34 0.0012 36.4 4.8 24 138-161 10-33 (589)
496 2woo_A ATPase GET3; tail-ancho 33.7 31 0.001 33.7 4.0 32 139-179 22-53 (329)
497 3a4m_A L-seryl-tRNA(SEC) kinas 33.6 18 0.00061 33.9 2.2 15 139-153 7-21 (260)
498 2yhs_A FTSY, cell division pro 33.3 28 0.00095 36.1 3.7 38 133-179 290-327 (503)
499 3asz_A Uridine kinase; cytidin 33.3 23 0.00079 31.6 2.8 19 139-157 9-27 (211)
500 3tif_A Uncharacterized ABC tra 33.2 17 0.0006 33.5 2.0 21 133-153 28-48 (235)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.9e-57 Score=480.09 Aligned_cols=375 Identities=34% Similarity=0.548 Sum_probs=330.0
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
+.+..+|+++++++.++++|++.++..|||+|+++|+.++++++++++++||||||++|++|++..+...... ....++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~ 130 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRP 130 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCC
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCc
Confidence 4566789999999999999999999999999999999999999999999999999999999999998763221 123367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
++|||+||++|+.|++++++++.. .+.+.+++++.....+...+..+++|+|+||++|.+++.+..+.+.++++||+|
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 899999999999999999999874 466788899998888888888889999999999999999888889999999999
Q ss_pred cchhccCCCcHHHHHHHHHHC--CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcc
Q 007085 253 EADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l--~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (618)
|||++++++|...+..++..+ ++.+|+++||||+++.+..++..++.++..+.+... ......+.+.........|
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k 288 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--GGACSDVKQTIYEVNKYAK 288 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--TCCCTTEEEEEEECCGGGH
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--cccccccceEEEEeCcHHH
Confidence 999999999999999999885 578999999999999999999999998887765322 2233455666666666777
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi 409 (618)
...+.+++.... .++||||++++.++.+++.|.+. +.+..+||++++.+|+++++.|++|+.+|||||+++++|||+
T Consensus 289 ~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi 366 (434)
T 2db3_A 289 RSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 366 (434)
T ss_dssp HHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc
Confidence 778888777653 35999999999999999999764 899999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEech-hhHHHHHHHHHHhcCCcccCCcccc
Q 007085 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
|++++||+||+|.++++|+||+||+||.|+.|.|++|+++ .+...+..+.+.+....+++|.++.
T Consensus 367 ~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 432 (434)
T 2db3_A 367 KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR 432 (434)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC
T ss_pred ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999999999995 4667778888888888888887654
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-54 Score=455.84 Aligned_cols=377 Identities=34% Similarity=0.549 Sum_probs=324.7
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhh-------
Q 007085 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK------- 167 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~------- 167 (618)
+.+..+|+++++++.+++.|...++..|+|+|.++|+.++.++++++++|||+|||++|++|++..+......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 4455679999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred -----cCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC
Q 007085 168 -----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 168 -----~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~ 240 (618)
......+++||++||++|+.|++++++++.. .+.+..++++.....+...+...++|+|+||++|.+.+....
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 0112246899999999999999999998764 467788888888888888888889999999999999998888
Q ss_pred CCCCCcceEEEccchhccCCCcHHHHHHHHHHC--CC--CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccC
Q 007085 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316 (618)
Q Consensus 241 ~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l--~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 316 (618)
+.+.++++|||||||++.+++|...+..++... +. ..|+++||||+++.+..+...++.++..+.... ......
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 248 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSE 248 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCS
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCcc
Confidence 889999999999999999999999999988753 32 678999999999999999999998887665432 222334
Q ss_pred CeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCcc
Q 007085 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
.+...........+...+..+++......++||||++++.++.+++.|.+ .+.+..+|+++++++|.++++.|++++.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 45555666666778888888888776778999999999999999999976 48999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 396 vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
|||||+++++|||+|++++||++++|+++.+|+||+||++|.|++|.|++++++.+...++.+.+.+.....+++.+.
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 406 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888877666666554
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.3e-53 Score=450.67 Aligned_cols=366 Identities=35% Similarity=0.609 Sum_probs=321.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
...+|+++++++.+++.|+..++..|+|+|+++++.+++++++++++|||+|||++|++|++..+.. .....++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 108 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQA 108 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCE
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceE
Confidence 4457999999999999999999999999999999999999999999999999999999999877532 1236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
||++||++|+.||++++.++.. .+.+..++++.....+...+...++|+|+||++|.+.+....+.+.++++||+|||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 9999999999999999999875 35567778888888887778788999999999999999988888899999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc-CCcchHH
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-MYEKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 333 (618)
|++.++++...+..++..+++..|+++||||+++.+..+...++.++..+.... .......+........ ...+...
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR--DELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCG--GGCSCTTEEEEEEEESSTTHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecC--ccccCCCceEEEEEeCcHHhHHHH
Confidence 999999999999999999999999999999999998888888888887764322 2222233444444433 3347777
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
+..++... ...++||||++++.++.+++.|.+ .+.+..+|+++++.+|+++++.|++++.+|||||+++++|||+|++
T Consensus 267 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 77777765 456999999999999999999965 4889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCc
Q 007085 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
++||++++|+++..|+||+||++|.|++|.|++++++.+...++.+++.++..++++|.
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999999999999998887764
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=9.9e-53 Score=442.41 Aligned_cols=368 Identities=31% Similarity=0.562 Sum_probs=321.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
....+|+++++++.+++.|.+.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ...+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 34557999999999999999999999999999999999999999999999999999999999887532 123568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
+||++|+++|+.|+++++.+++. .+.+..++++.....+...+...++|+|+||++|.+.+......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999876 4566777788777776666777899999999999999888777889999999999
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHH
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (618)
||++.+..+...+..++..+++..++++||||+++.+...+..++.++..+..... .....+..+........+...
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEechhhHHHH
Confidence 99998877888888888888889999999999999999999888888877654322 223345555555666667777
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
+..++... ...++||||++++.++.+++.|.+ .+.+..+|++++..+|.++++.|++++.+|||||+++++|+|+|++
T Consensus 249 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 249 LNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp HHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTE
T ss_pred HHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCC
Confidence 77777665 557999999999999999999976 4889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
++||++++|+++..|+||+||++|.|++|.|++++++.+...++.+++.++..++++|...
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999998887643
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.9e-52 Score=433.75 Aligned_cols=366 Identities=27% Similarity=0.485 Sum_probs=317.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
.+|+++++++.+++.|+..++..|+|+|.++++.++.++++++++|||+|||++|++|++..+.. .....++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEE
Confidence 46889999999999999999999999999999999999999999999999999999999877532 123568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
++|+++|+.||++++.++.. .+.+..++++.........+.. .++|+|+||++|...+....+.+.++++||+|||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 99999999999999998763 5778888888877766665554 4799999999999999888888999999999999
Q ss_pred hhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHH
Q 007085 255 DQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (618)
Q Consensus 255 H~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (618)
|++.++ .+...+..++...++..|+++||||+++.+..++..++.++..+...... ......+...........+...
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC-CCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc-ccCcccceEEEEEcCchhHHHH
Confidence 999874 57778888888888899999999999999999999999888777543322 2223445556666666677777
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
+..+++.. +..++||||++++.++.+++.|.+. +.+..+|+++++.+|.++++.|++++.+|||||+++++|+|+|++
T Consensus 241 l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 241 LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 87877765 5679999999999999999999764 889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh-hHHHHHHHHHHhcCCcccCCcc
Q 007085 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
++||++++|+++..|+||+||++|.|+++.|++++++. +...++.+++.++..++++|..
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99999999999999999999999999999999999876 4566788999999888887764
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-52 Score=442.29 Aligned_cols=369 Identities=33% Similarity=0.557 Sum_probs=304.6
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
......|+++++++.+++.|++.++..|+++|+++++.+++++++++++|||+|||++|+++++..+.. .....
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~ 109 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKAT 109 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCce
Confidence 344457889999999999999999999999999999999999999999999999999999999987633 12367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhh-cCCCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
++||++|+++|+.|++++++++.. ...+..++++.........+. ..++|+|+||++|.+.+....+.+.++++|||
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 899999999999999999998764 455666677777666655555 56899999999999999988888899999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEE-eccCCcc
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSMYEK 330 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ 330 (618)
||||++.++++...+..++..++++.|+++||||+++.+..+...++.++..+..... . .....+..... ......+
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 267 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-E-LTLEGIRQFYINVEREEWK 267 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC-C-CCTTSCCEEEEECSSSTTH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC-c-cCCCCceEEEEEeChHHhH
Confidence 9999999999999999999999999999999999999999999999988877654322 1 22223333333 3344447
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi 409 (618)
...+..+++.. ...++||||++++.++.+++.|.+. +.+..+|+++++.+|.++++.|++++.+|||||+++++|||+
T Consensus 268 ~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 346 (414)
T 3eiq_A 268 LDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 346 (414)
T ss_dssp HHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG
T ss_pred HHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc
Confidence 77777777665 4569999999999999999999764 899999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCcc
Q 007085 410 PNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 410 ~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
|++++||++++|+++.+|+||+||++|.|++|.|++++++.+...++.+++.++..+++++..
T Consensus 347 p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 347 QQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp GGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred cCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 999999999999999999999999999999999999999999999999999999988887654
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-51 Score=424.58 Aligned_cols=357 Identities=37% Similarity=0.627 Sum_probs=311.4
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
..+|+++++++.+++.|++.++..|+|+|+++++.++++ +++++++|||+|||++++++++..+.. ..+.++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~~ 77 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEA 77 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCcE
Confidence 346889999999999999999999999999999999988 689999999999999999998877532 236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
||++|+++|+.|+++++.+++. .+.+..++++.........+. .++|+|+||++|.+.+....+.+.++++||+|||
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 9999999999999999999764 456677777777666555554 6899999999999999888788899999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHH
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 334 (618)
|++.++.+...+..++..+++..++++||||+++........++.++..+.... ...+...........+...+
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHHH
Confidence 999999899999999999999999999999999998888888887766554321 12344455555556666666
Q ss_pred HHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCcc
Q 007085 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (618)
Q Consensus 335 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~ 413 (618)
..++. ....++||||++++.++.+++.|.+ .+.+..+|++++..+|+++++.|++++.+|||||+++++|+|+|+++
T Consensus 231 ~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 231 CRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 66665 3567899999999999999999976 48899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCC
Q 007085 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
+||++++|+++.+|+||+||++|.|+++.|++++++.+...++.+++.++..+++++
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999999988877653
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.5e-51 Score=448.85 Aligned_cols=361 Identities=29% Similarity=0.493 Sum_probs=298.2
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
++++++++|...++..|+|+|.++|+.++ .++++|+++|||+|||++|++|++..+...... ....+++|||+||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 105 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--ccCCCeEEEEcchH
Confidence 89999999999999999999999999999 678999999999999999999999988763321 22356899999999
Q ss_pred HHHHHHHHHHHHhC------CCCceEEEEcCCchHHHHHHhh-cCCCEEEEChHHHHHHHHhc-CCCCCCcceEEEccch
Q 007085 184 ELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEAD 255 (618)
Q Consensus 184 ~La~q~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vViDEaH 255 (618)
+|+.|+++++.+++ +...+..++++.........+. ..++|+|+||++|.+++... ...+.++++|||||||
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH
Confidence 99999999999854 3456777888887776666554 47999999999999888664 3457889999999999
Q ss_pred hccCCCcHHHHHHHHHHCC-------CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEecc--CCcccccCCeEEEEEecc
Q 007085 256 QMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSDQKLADGISLYSIATS 326 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~-------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~~~~~~~~~~~~ 326 (618)
++++++|...+..++..++ ..+|+++||||+++.+..++..++.++..+.+.. .........+........
T Consensus 186 ~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEec
Confidence 9999999999988887763 3779999999999999999988888876654432 122222333443333333
Q ss_pred C-Cc-chHHHHH---HHHHhhcCCcEEEEecchhHHHHHHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEE
Q 007085 327 M-YE-KPSIIGQ---LITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (618)
Q Consensus 327 ~-~~-~~~~l~~---~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vL 397 (618)
. .. +...+.. .+.......++||||++++.++.+++.|.+ .+.+..+|++|++.+|.++++.|++++.+||
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 345 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEE
Confidence 2 21 2222222 233334577999999999999999999965 5789999999999999999999999999999
Q ss_pred EEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 398 VaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
|||+++++|||+|++++||++++|.+++.|+||+||++|.|+++.|++++.+.+...++.+++.....+..
T Consensus 346 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred EEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999998887665543
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.7e-50 Score=427.07 Aligned_cols=367 Identities=28% Similarity=0.465 Sum_probs=303.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCC
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~ 173 (618)
....+|+++++++.+++.|++.++..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.. ....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~ 95 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKY 95 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCS
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCC
Confidence 34567999999999999999999999999999999999987 899999999999999999999987643 1235
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCcceE
Q 007085 174 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFV 249 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~v 249 (618)
+++||++|+++|+.|+++.++++.. .+.+....++...... ....++|+|+||++|.+.+.. ..+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 6899999999999999999888753 4556665555443221 134579999999999988865 45567899999
Q ss_pred EEccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEec-cC
Q 007085 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SM 327 (618)
Q Consensus 250 ViDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 327 (618)
||||||++.+ ..+...+..++..++.+.|+++||||+++.+..+...++.++..+..... ......+....... ..
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG--GSSCTTEEEEEEECSSH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc--cccccCceEEEEEcCCh
Confidence 9999999887 56888888899999999999999999999999999999988887754322 22233344443333 33
Q ss_pred CcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccC
Q 007085 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (618)
Q Consensus 328 ~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~G 406 (618)
..+...+..++... ...++||||++++.++.+++.|.+ .+.+..+|++|++.+|.++++.|++++.+|||||+++++|
T Consensus 251 ~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 251 DEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329 (412)
T ss_dssp HHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccC
Confidence 45566666666654 457999999999999999999976 4889999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCC------ChhHHHHHhccCCCCCCcceEEEEechhh-HHHHHHHHHHhcCCcccCCcccc
Q 007085 407 LDVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 407 lDi~~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
||+|++++||++++|+ +..+|+||+||+||.++.|.|++++.+.+ ...++.+++.++..+.+++....
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 404 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 404 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-----
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccH
Confidence 9999999999999994 67899999999999999999999998765 77889999999988887765443
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.3e-51 Score=447.01 Aligned_cols=370 Identities=29% Similarity=0.484 Sum_probs=301.0
Q ss_pred CCCCccCCC----CCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCC
Q 007085 97 EGLDISKLD----ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (618)
Q Consensus 97 ~~~~~~~~~----l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~ 170 (618)
...+|+++. +++.+++.|++.++..|+|+|.++|+.++ .++++|+++|||+|||++|++|++..+.+.... .
T Consensus 66 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~ 143 (563)
T 3i5x_A 66 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--S 143 (563)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--S
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--c
Confidence 334455443 99999999999999999999999999999 668999999999999999999999998763321 1
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhC------CCCceEEEEcCCchHHHHHHh-hcCCCEEEEChHHHHHHHHhc-CCC
Q 007085 171 GRNPLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN-ALN 242 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~-~~~ 242 (618)
...+++|||+||++|+.|+++++++++ +...+..++++.........+ ...++|+|+||++|.+.+.+. ...
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 235689999999999999999998853 235577778887766665555 457999999999999888654 235
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCC-------CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccC--Cccc
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQK 313 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~ 313 (618)
+.++++|||||||++++++|...+..++..++ +++|+++||||+++.+..++..++.++..+.+... ....
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 78899999999999999999999988877653 37799999999999999998888887766544221 2222
Q ss_pred ccCCeEEEEEeccC-Ccc-hHHHH---HHHHHhhcCCcEEEEecchhHHHHHHHHHHh----cCCeeeecCcCCHHHHHH
Q 007085 314 LADGISLYSIATSM-YEK-PSIIG---QLITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRER 384 (618)
Q Consensus 314 ~~~~~~~~~~~~~~-~~~-~~~l~---~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~ 384 (618)
....+......... ..+ ...+. ..+.......++||||++++.++.+++.|.+ .+.+..+|++|++.+|.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Confidence 23334433333322 222 12222 2233334577999999999999999999965 578999999999999999
Q ss_pred HHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcC
Q 007085 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGC 464 (618)
Q Consensus 385 i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 464 (618)
+++.|++++.+|||||+++++|||+|++++||++++|.++.+|+||+||+||.|+.|.|++++.+.+...++.+++....
T Consensus 384 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 384 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463 (563)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred Cccc
Q 007085 465 RFTQ 468 (618)
Q Consensus 465 ~~~~ 468 (618)
.+..
T Consensus 464 ~~~~ 467 (563)
T 3i5x_A 464 VIAK 467 (563)
T ss_dssp CCCE
T ss_pred Cccc
Confidence 6554
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.3e-49 Score=417.66 Aligned_cols=360 Identities=30% Similarity=0.535 Sum_probs=298.0
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
..+|+++++++.+++.|++.++..|+|+|.++++.++.+ +++++++|||+|||++|+++++..+.. ...+.+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 77 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQ 77 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCcc
Confidence 357899999999999999999999999999999999998 899999999999999999999887632 123678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
+||++|+++|+.|+++++.++.. .+.+...+++..... ....++|+|+||++|.+.+....+.+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999764 344444444432211 133589999999999999988888899999999999
Q ss_pred chhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEec-cCCcch
Q 007085 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKP 331 (618)
Q Consensus 254 aH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 331 (618)
||++.+ ..+...+..++..++++.|+++||||+++.+..+...++.++..+..... ......+....... ....+.
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN--EVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG--GCSCTTEEEEEEECSSHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc--ccccccccEEEEEcCchHHHH
Confidence 999887 56888888899999999999999999999999999999888877654322 22223333333333 333455
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~ 410 (618)
..+..++... ...++||||++++.++.+++.|.+. +.+..+|+++++.+|.++++.|++++.+|||||+++++|||+|
T Consensus 232 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 232 DVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcc
Confidence 5555555443 5679999999999999999999764 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCC------ChhHHHHHhccCCCCCCcceEEEEechh-hHHHHHHHHHHhc-CCcccCC
Q 007085 411 NVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVG-CRFTQLP 470 (618)
Q Consensus 411 ~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~-~~~~~~~ 470 (618)
++++||++++|+ ++.+|+||+||++|.|+++.|++++.+. +...+..+++.++ ..+..++
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 999999999999 9999999999999999999999999864 4566777887776 5555444
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.9e-52 Score=433.84 Aligned_cols=365 Identities=32% Similarity=0.554 Sum_probs=179.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
....|+++++++.+++.|...++..|+|+|+++++.++.++++++++|||+|||++|++|++..+.. ...++++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 3456999999999999999999999999999999999999999999999999999999999887633 1236689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
||++|+++|+.|+++++.+++. .+.+..++++.........+. .++|+|+||++|.+.+....+.+.++++||+|||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 9999999999999999999875 456777777777665555444 5799999999999999888888899999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEe-ccCCcchHH
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSI 333 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 333 (618)
|++.++.+...+..++..+++..|+++||||+++.+..+...++.++..+....... ....+...... .....+...
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL--TLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc--cCCCceEEEEEcCchhhHHHH
Confidence 999988899999999999999999999999999999999989988887775532211 11122222222 222235555
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~ 412 (618)
+..+++.. ...++||||++++.++.+++.|.+. +.+..+|+++++.+|.++++.|++++.+|||||+++++|+|+|++
T Consensus 250 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 250 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 66665544 4569999999999999999999664 789999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCc
Q 007085 413 DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 413 ~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
++||++++|+++..|+||+||++|.|++|.|++++++.+...++.+++.++..++.++.
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999999988888777654
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.3e-49 Score=402.13 Aligned_cols=333 Identities=34% Similarity=0.583 Sum_probs=282.0
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++++.+.|++.++..|+|+|+++++.+++++++++++|||+|||++|++|++.. +.++||++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 5789999999999999999999999999999999999999999999999988763 5679999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcH
Q 007085 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 186 a~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
+.||+++++++.. +..+..++++.....+...+. .++|+|+||++|.+.+....+.+.++++||+||||++.++.+.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 9999999998765 356777778777666655554 4899999999999998887777889999999999999999999
Q ss_pred HHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhc
Q 007085 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 343 (618)
..+..++..++...++++||||+++.+......++.++..+... .....+...........+ . ....+.. ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~~~~~~-~~ 219 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWR-S-KVQALRE-NK 219 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSH-H-HHHHHHT-CC
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHH-H-HHHHHHh-CC
Confidence 99999999999999999999999999999999988887666432 112223333333333222 2 2233332 35
Q ss_pred CCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNT 423 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~ 423 (618)
..++||||++++.++.+++.|. .+..+|++++..+|.++++.|++++.+|||||+++++|+|+|++++||++++|++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 6799999999999999998885 5789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhc
Q 007085 424 SETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVG 463 (618)
Q Consensus 424 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 463 (618)
+.+|+||+||++|.|+++.|++++. .+...++.+++.++
T Consensus 297 ~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999 78777887776654
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=436.38 Aligned_cols=364 Identities=28% Similarity=0.480 Sum_probs=168.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
...+|+++++++.+++.|+..++..|+|+|.++++.++.+ +++|+++|||||||++|++|++..+.. ....+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~ 163 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCC
Confidence 3457899999999999999999999999999999999987 899999999999999999999877633 12355
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhC---CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCcceEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vV 250 (618)
++|||+||++|+.|+++.+.++. +.+.+....++...... ....++|+|+||++|.+++.+ ..+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999988877654 45566665555442221 133579999999999998865 345678999999
Q ss_pred EccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEE-eccCC
Q 007085 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSMY 328 (618)
Q Consensus 251 iDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~ 328 (618)
|||+|++.+ ..+...+..++..++.++|+|++|||+++.+..+...++.++..+.+.... .....+.+... .....
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ 318 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE--ETLDTIKQYYVLCSSRD 318 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc--cCcCCceEEEEEeCCHH
Confidence 999999987 567888888888889999999999999999999999999888877653322 11222222222 22234
Q ss_pred cchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 007085 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 329 ~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gl 407 (618)
.+...+..++... ...++||||++++.++.+++.|.+ .+.+..+|+++++.+|..+++.|++|+.+|||||+++++||
T Consensus 319 ~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 319 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 4555555555543 456899999999999999999976 47899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCC------ChhHHHHHhccCCCCCCcceEEEEechhh-HHHHHHHHHHhcCCcccCCcc
Q 007085 408 DVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQ-ARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 408 Di~~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~ 472 (618)
|+|++++||+||+|. +..+|+||+||+||.|+.|.|++++++.+ ...++.+++.++..+..++..
T Consensus 398 Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 999999999999995 66899999999999999999999998765 667788888888777766543
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-47 Score=415.62 Aligned_cols=339 Identities=18% Similarity=0.314 Sum_probs=270.6
Q ss_pred ccCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 101 ISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 101 ~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+.++++++++.+.|++ .++..|+|+|.++|+.+++++++|+.+|||+|||++|++|++.. ..++|||
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~lVi 90 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTLVI 90 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEEEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEEEE
Confidence 3467889999999988 69999999999999999999999999999999999999998752 4589999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh------hcCCCEEEEChHHHH------HHHHhcCCCCCCcc
Q 007085 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL------DYGVDAVVGTPGRVI------DLIKRNALNLSEVQ 247 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Ilv~T~~~l~------~~l~~~~~~~~~~~ 247 (618)
+|+++|+.|+++.+.++ .+.+..++++.........+ ...++|+|+||++|. +.+.. ...+.+++
T Consensus 91 sP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~ 167 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFT 167 (591)
T ss_dssp CSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEE
T ss_pred eCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCc
Confidence 99999999999999998 57777777777655443322 346899999999874 22222 33467899
Q ss_pred eEEEccchhccCCC--cHHHHHH--HHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEE
Q 007085 248 FVVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323 (618)
Q Consensus 248 ~vViDEaH~~~~~~--~~~~~~~--il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~ 323 (618)
+|||||||++.+|+ |.+.+.. ++....++.++|+||||+++.+...+..++..+..+.+..... ...+. +.+
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~---r~nl~-~~v 243 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN---RPNLY-YEV 243 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC---CTTEE-EEE
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC---CcccE-EEE
Confidence 99999999999876 6555443 3444446799999999999998888887776554333222111 11222 222
Q ss_pred eccCCcchHH---HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEE
Q 007085 324 ATSMYEKPSI---IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 324 ~~~~~~~~~~---l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa 399 (618)
......+... +..++....++.++||||++++.++.+++.|.+ .+.+..+|++|++++|.++++.|++++.+||||
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVA 323 (591)
T 2v1x_A 244 RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVA 323 (591)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred EeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 2222223333 334443333568999999999999999999975 489999999999999999999999999999999
Q ss_pred cCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 400 T~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
|+++++|||+|++++||++++|.+++.|+|++||+||.|+++.|++++.+.|...+..+
T Consensus 324 T~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 324 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred echhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887655544
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1e-46 Score=406.58 Aligned_cols=338 Identities=20% Similarity=0.340 Sum_probs=270.7
Q ss_pred CCccCCCCCHHHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 99 LDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
.+|+++++++++.+.|++ .++..|+|+|.++|+.+++++++++.+|||+|||++|++|++.. ...+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 368899999999999988 89999999999999999999999999999999999999998743 35799
Q ss_pred EEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHH----HhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
||+|+++|++|+.+.+.++ .+.+..+++......... .....++|+|+||++|........+...++++|||||
T Consensus 70 vi~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDE 147 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESS
T ss_pred EECChHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeC
Confidence 9999999999999999986 466777777666544332 2234589999999999533222223457899999999
Q ss_pred chhccCCC--cHHHHH---HHHHHCCCCCcEEEEEeeCchHHHHHHHHhc--CCCcEEEeccCCcccccCCeEEEEEecc
Q 007085 254 ADQMLSVG--FAEDVE---VILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATS 326 (618)
Q Consensus 254 aH~~~~~~--~~~~~~---~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (618)
||++.+++ |...+. .+...+ ++.++++||||+++.+...+...+ .++..+ ..... ...+. .....
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~----r~~l~--~~v~~ 219 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD----RPNIR--YMLME 219 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC----CTTEE--EEEEE
T ss_pred ccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC----CCceE--EEEEe
Confidence 99998876 544443 344445 468999999999998766555444 233332 21111 11222 22223
Q ss_pred CCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcccc
Q 007085 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 327 ~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
...+...+..++... ++.++||||++++.++.+++.|.+ .+.+..+|++|++++|+++++.|++++.+|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 345556666666654 567999999999999999999976 488999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHH
Q 007085 406 GLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (618)
Q Consensus 406 GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 459 (618)
|||+|++++||++++|.+++.|+||+||+||.|+++.|++++++.|...++.+.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876665544
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-48 Score=419.06 Aligned_cols=367 Identities=28% Similarity=0.457 Sum_probs=252.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
+...+...++++.+++.|...++..|+++|.++++.++++ +++|+++|||+|||++|+++++..+.. ...++
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~------~~~~~ 190 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA------SVPKP 190 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT------TCCSC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh------CCCCc
Confidence 3345666778899999999999999999999999999998 899999999999999999999987643 12356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCCCce--EEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
++||++|+++|+.|+++++++++..... ....++... ......++|+|+||++|.+.+....+.+.++++||||
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiD 266 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD 266 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEC
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEe
Confidence 8999999999999999999998754433 222222211 1123368999999999999998888889999999999
Q ss_pred cchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch
Q 007085 253 EADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (618)
Q Consensus 253 EaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (618)
|||++.+ ..+...+..++..++++.|+|+||||+++.+..+...++.++..+.+...... .......+........+.
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~k~ 345 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELS-VEGIKQLYMDCQSEEHKY 345 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHH
T ss_pred chhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCC-cccceEEEEECCchHHHH
Confidence 9999887 56888999999999999999999999999999999999888877654322211 111112222222334455
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~ 410 (618)
..+..++... ...++||||++++.++.+++.|.+. +.+..+|+++++.+|+++++.|++++.+|||||+++++|||+|
T Consensus 346 ~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip 424 (508)
T 3fho_A 346 NVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVS 424 (508)
T ss_dssp HHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCT
T ss_pred HHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCcc
Confidence 5565655544 4579999999999999999999664 7899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCC------CChhHHHHHhccCCCCCCcceEEEEech-hhHHHHHHHHHHhcCCcccCCccccc
Q 007085 411 NVDLIIHYELP------NTSETFVHRTGRTGRAGKKGSAILIYTD-QQARQVKSIERDVGCRFTQLPRIAVE 475 (618)
Q Consensus 411 ~~~~VI~~~~p------~~~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~ 475 (618)
++++||++++| .++.+|+||+||+||.++++.|++++.+ .+...++.+++.++..++.++....+
T Consensus 425 ~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 425 QVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp TCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred CCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 99999999999 7899999999999999999999999984 45667888999998888877654443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-45 Score=389.58 Aligned_cols=326 Identities=20% Similarity=0.292 Sum_probs=256.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
+++.+.|++....+|+|+|.++++.+++++++++++|||+|||++|+++++..+. .++++|||+||++|+.
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHH
Confidence 3456666664445799999999999999999999999999999999888877652 2678999999999999
Q ss_pred HHHHHHHHhCC-CCceEEEEcCCch---HHHHHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC---
Q 007085 188 QVEKEFHESAP-SLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (618)
Q Consensus 188 q~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~--- 259 (618)
|++++++++.. ++.+..++++... ..+...+..+ ++|+|+||++|.+.+.. +.+.++++|||||||++..
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 99999999875 6678888888887 3444555554 99999999999887765 5577999999999997653
Q ss_pred --------CCcHHH-HHHHHHHCC-----------CCCcEEEEEee-CchHHH-HHHHHhcCCCcEEEeccCCcccccCC
Q 007085 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIR-SLTNKYLKNPLTVDLVGDSDQKLADG 317 (618)
Q Consensus 260 --------~~~~~~-~~~il~~l~-----------~~~~~l~lSAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (618)
.+|... +..++..++ +..|++++||| +|+.+. .+...++. +.. .........
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~ 230 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTV--GRLVSVARN 230 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCS--SCCCCCCCS
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCc--Ccccccccc
Confidence 556666 788888776 78999999999 554433 22233322 111 111112223
Q ss_pred eEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCee-eecCcCCHHHHHHHHHHHhcCCcc
Q 007085 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE-PLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
+....... .+...+..+++.. +.++||||++++.++.+++.|.+ .+.+. .+|+. +|+ ++.|++|+++
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred chheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 33333332 4566677777763 47999999999999999999976 48887 89985 444 9999999999
Q ss_pred EEEE----cCccccCCCCCC-ccEEEEcCCC--CChhHHHHHhccCCCCC----CcceEEEEechhhHHHHHHHHHHhc
Q 007085 396 ILIA----TDVAARGLDVPN-VDLIIHYELP--NTSETFVHRTGRTGRAG----KKGSAILIYTDQQARQVKSIERDVG 463 (618)
Q Consensus 396 vLVa----T~~~~~GlDi~~-~~~VI~~~~p--~~~~~~~Qr~GR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 463 (618)
|||| |+++++|||+|+ +++||++++| .++.+|+||+||+||.| ++|.|++++ .+...++.+++.++
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999 999999999999 9999999999 99999999999999987 589999998 56666777777766
No 19
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-46 Score=417.15 Aligned_cols=378 Identities=19% Similarity=0.264 Sum_probs=278.8
Q ss_pred CCCCCCCccccccCCccccccccccCCcCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCC-HHHHHHHHHcCCC
Q 007085 42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDIS-QDIVAALARRGIS 120 (618)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~~~ 120 (618)
.+++...++..+|+|++.+.+..+++++.|+++..++.........+.... .. .+..+ +.+.+.++..+|
T Consensus 297 ~l~~~~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~~~-----~~---~~~~~~~~~~~~~~~lpf- 367 (780)
T 1gm5_A 297 KLLGVKDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHG-----GI---PKKIEGKLAEEFIKSLPF- 367 (780)
T ss_dssp CCCCSHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CC---CCCCCTHHHHHHHHHSSS-
T ss_pred CCCcHHHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-----CC---CCCCchHHHHHHHHhCCC-
Confidence 366889999999999999999889999999999998876433222211111 11 12223 344444566777
Q ss_pred CChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+||++|+++++.++++ +++|++++||||||++|++|++..+.. +.+++|++||++|+.|+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHH
Confidence 8999999999998875 689999999999999999999988765 6789999999999999999999
Q ss_pred HhCC--CCceEEEEcCCchHHHHHH---hhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHH
Q 007085 195 ESAP--SLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (618)
Q Consensus 195 ~~~~--~~~~~~~~~~~~~~~~~~~---~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~ 268 (618)
+++. ++.+..++++.....+... +.. .++|+|+||+.|.+ .+.+.++++|||||+|++... ...
T Consensus 439 ~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~-----qr~ 508 (780)
T 1gm5_A 439 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK-----QRE 508 (780)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------C
T ss_pred HHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH-----HHH
Confidence 9876 4677888888876654332 333 48999999987754 456889999999999996321 122
Q ss_pred HHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEE
Q 007085 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (618)
Q Consensus 269 il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 348 (618)
.+......+++++|||||++....+. ++.+.....+ ..... ....+.. ..........++..+.+....+.+++
T Consensus 509 ~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i-~~~p~-~r~~i~~--~~~~~~~~~~l~~~i~~~l~~g~qvl 582 (780)
T 1gm5_A 509 ALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVI-DEMPP-GRKEVQT--MLVPMDRVNEVYEFVRQEVMRGGQAF 582 (780)
T ss_dssp CCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEE-CCCCS-SCCCCEE--CCCCSSTHHHHHHHHHHHTTTSCCBC
T ss_pred HHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeee-eccCC-CCcceEE--EEeccchHHHHHHHHHHHHhcCCcEE
Confidence 22233457899999999988654433 2333221111 11110 0111111 11222233344444445556678999
Q ss_pred EEecchh--------HHHHHHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEE
Q 007085 349 VFTQTKR--------DADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII 416 (618)
Q Consensus 349 Vf~~~~~--------~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI 416 (618)
|||++++ .++.+++.|.+ .+.+..+||+|++.+|+++++.|++|+++|||||+++++|||+|++++||
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 9999764 46778888876 36789999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-ChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 417 HYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 417 ~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
++++|+ +..+|+||+||+||.++++.|++++.+.+..
T Consensus 663 i~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 663 IENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp BCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred EeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999996 7899999999999999999999999843333
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.5e-44 Score=402.23 Aligned_cols=349 Identities=21% Similarity=0.316 Sum_probs=270.4
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
+|+++++++.+.+.+++.++..|+|+|.++++. +.+++++++++|||||||++|.++++..+... +.++||
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEE
Confidence 588999999999999999999999999999998 88899999999999999999999999887631 568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
++|+++|+.|++++++++.+ ++.+..++++...... ....++|+|+||++|...+......+.++++|||||+|++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999999965433 5677777776553322 1235899999999999988876666889999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCe---EEEEEec----cCCcc
Q 007085 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI---SLYSIAT----SMYEK 330 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~---~~~~~~~----~~~~~ 330 (618)
.++.+...+..++..++.+.|+|+||||+++. ..+..++..+. +...... ......+ ....... ....+
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~rp-~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAEL-IVSDWRP-VKLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEE-EECCCCS-SEEEEEEEETTEEEETTSCEEECSST
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCcc-cCCCCCC-CcceEEEEeCCeeeccccchhhhhHH
Confidence 98889999999999988789999999999863 33334443211 1110000 0000000 0000100 02233
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc----------------------------------CCeeeecCc
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------YNCEPLHGD 376 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~lhg~ 376 (618)
...+.+.+ .+++++||||+++++++.+++.|.+. ..+..+|++
T Consensus 227 ~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 227 EELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp THHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 34444333 46689999999999999999988642 148889999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----cC----CCCChhHHHHHhccCCCCC--CcceEEEE
Q 007085 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE----LPNTSETFVHRTGRTGRAG--KKGSAILI 446 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~~----~p~~~~~~~Qr~GR~gR~g--~~g~~~~~ 446 (618)
|++++|+.+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.+ ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999998 76 5889999999999999987 57899999
Q ss_pred echhhHHHHHHHHHHhcCCccc
Q 007085 447 YTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 447 ~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
+++.+.. ..+++.+....++
T Consensus 384 ~~~~~~~--~~~~~~~~~~~~~ 403 (720)
T 2zj8_A 384 STSDDPR--EVMNHYIFGKPEK 403 (720)
T ss_dssp CSSSCHH--HHHHHHTTSCCCC
T ss_pred ecCccHH--HHHHHHhcCCCCC
Confidence 9887732 2233445433333
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.6e-43 Score=394.22 Aligned_cols=338 Identities=22% Similarity=0.345 Sum_probs=259.7
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
..+|+++++++.+.+.+++.++..|+|+|.++++. +.+++++++++|||||||+++.++++..+.. .+.++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~i 78 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKA 78 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeE
Confidence 35789999999999999999999999999999999 7888999999999999999999999988753 15689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 177 LVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
||++|+++|+.|++++++++.. ++.+..++|....... .+ ..++|+|+||++|...+......+.++++|||||+|
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999964432 4566666666543322 12 368999999999999888866668899999999999
Q ss_pred hccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCC--------eEEEEEeccC
Q 007085 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG--------ISLYSIATSM 327 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~ 327 (618)
.+.+..+...++.++.+++ +.|+|+||||+++. .. +..++..+. +....... ..... ..........
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~-~~~~l~~~~-~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQ-IAKWLGAEP-VATNWRPV-PLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HH-HHHHHTCEE-EECCCCSS-CEEEEEEEECSSTTEEEEEETTS
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HH-HHHHhCCCc-cCCCCCCC-CceEEEEecCCcccceeeecCcc
Confidence 9988788888998888886 89999999999862 33 334443221 11100000 00000 0000000110
Q ss_pred -----CcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-----------------------------------
Q 007085 328 -----YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------- 367 (618)
Q Consensus 328 -----~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------- 367 (618)
......+..+.+...+++++||||+++++++.+++.|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp CEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 0012233333444456789999999999999999998653
Q ss_pred --CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----cC-------CCCChhHHHHHhccC
Q 007085 368 --YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE-------LPNTSETFVHRTGRT 434 (618)
Q Consensus 368 --~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~~-------~p~~~~~~~Qr~GR~ 434 (618)
..+..+|++|++++|+.+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24788999999999999999999999999999999999999999999999 88 789999999999999
Q ss_pred CCCC--CcceEEEEechhh
Q 007085 435 GRAG--KKGSAILIYTDQQ 451 (618)
Q Consensus 435 gR~g--~~g~~~~~~~~~~ 451 (618)
||.+ ..|.|++++++.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 9987 4789999998765
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.6e-44 Score=401.03 Aligned_cols=337 Identities=23% Similarity=0.322 Sum_probs=258.9
Q ss_pred CccCCC--CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 100 ~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
+|++++ +++.+.+.|++.++.+|+|+|.++++.+.+++++++++|||||||+++.++++..+.+ +.++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 567777 8999999999999999999999999999999999999999999999999999988754 56899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
|++|+++|+.|++++++++.+ ++.+..++|....... ....++|+|+||++|...+.+....+.++++|||||+|+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 999999999999999965433 4566677776543321 123689999999999998888665688999999999999
Q ss_pred ccCCCcHHHHHHHHHHC---CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcc-c--ccCCeEEEEEeccCC--
Q 007085 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-K--LADGISLYSIATSMY-- 328 (618)
Q Consensus 257 ~~~~~~~~~~~~il~~l---~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~-- 328 (618)
+.++.+...+..++..+ .++.|+|+||||+++ ... +..++..+. +........ . ........ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~-~~~~l~~~~-~~~~~r~~~l~~~~~~~~~~~-~~~~~~~~ 225 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTE-IAEWLDADY-YVSDWRPVPLVEGVLCEGTLE-LFDGAFST 225 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHH-HHHHTTCEE-EECCCCSSCEEEEEECSSEEE-EEETTEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHH-HHHHhCCCc-ccCCCCCccceEEEeeCCeee-ccCcchhh
Confidence 99888888888877666 578999999999986 233 344554222 111100000 0 00000001 111000
Q ss_pred -cchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-------------------------------CCeeeecCc
Q 007085 329 -EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-------------------------------YNCEPLHGD 376 (618)
Q Consensus 329 -~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------~~~~~lhg~ 376 (618)
.....+..+.+...+++++||||+++++++.+++.|.+. ..+..+|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 111123333333446789999999999999999888642 357889999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----cC---CCCChhHHHHHhccCCCCC--CcceEEEEe
Q 007085 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE---LPNTSETFVHRTGRTGRAG--KKGSAILIY 447 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~~---~p~~~~~~~Qr~GR~gR~g--~~g~~~~~~ 447 (618)
|++++|+.+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.+ ..|.|++++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 66 6889999999999999987 578999999
Q ss_pred chhhH
Q 007085 448 TDQQA 452 (618)
Q Consensus 448 ~~~~~ 452 (618)
++.+.
T Consensus 386 ~~~~~ 390 (702)
T 2p6r_A 386 GKRDR 390 (702)
T ss_dssp CGGGH
T ss_pred cCccH
Confidence 98773
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-43 Score=387.54 Aligned_cols=329 Identities=20% Similarity=0.263 Sum_probs=199.4
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
..+|+|+|.++++.++.++++|+++|||+|||++|++|++..+.+. ....+.++|||+||++|+.||++++.++++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC----CSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhC----cccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999999999999999999999887652 112267899999999999999999999876
Q ss_pred --CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCcceEEEccchhccCCCcHHHHH-HHHHH-C
Q 007085 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDVE-VILER-L 273 (618)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDEaH~~~~~~~~~~~~-~il~~-l 273 (618)
.+.+..++++.........+...++|+|+||++|.+.+....+ .+.++++|||||||++.++.....+. .++.. +
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 6778888888776666566666789999999999999988777 78999999999999998876433332 22222 1
Q ss_pred ---CCCCcEEEEEeeCch-----------HHHHHHHH------------------hcCCCcEEEeccCC--ccccc----
Q 007085 274 ---PQNRQSMMFSATMPP-----------WIRSLTNK------------------YLKNPLTVDLVGDS--DQKLA---- 315 (618)
Q Consensus 274 ---~~~~~~l~lSAT~~~-----------~~~~~~~~------------------~l~~~~~i~~~~~~--~~~~~---- 315 (618)
.+..++|+|||||+. .+..+... +...+......... .....
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 356899999999953 11111111 11111111110000 00000
Q ss_pred -----------C--CeEEEE-E----------------------------------------------------------
Q 007085 316 -----------D--GISLYS-I---------------------------------------------------------- 323 (618)
Q Consensus 316 -----------~--~~~~~~-~---------------------------------------------------------- 323 (618)
. ...... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 000000 0
Q ss_pred ----------------------------------------------eccCCcchHHHHHHHHHh---hcCCcEEEEecch
Q 007085 324 ----------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFTQTK 354 (618)
Q Consensus 324 ----------------------------------------------~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~ 354 (618)
......|...+..++.+. .++.++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 000123444555555443 4568999999999
Q ss_pred hHHHHHHHHHHhc-----C--------CeeeecCcCCHHHHHHHHHHHhc-CCccEEEEcCccccCCCCCCccEEEEcCC
Q 007085 355 RDADRLAHAMAKS-----Y--------NCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHYEL 420 (618)
Q Consensus 355 ~~~~~l~~~L~~~-----~--------~~~~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~GlDi~~~~~VI~~~~ 420 (618)
+.++.+++.|.+. + ....+|++|++.+|.++++.|++ |+++|||||+++++|||+|++++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999652 2 33455778999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 421 PNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 421 p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
|+++..|+||+|| ||. +++.|++++++.+..
T Consensus 481 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999 999 889999999887653
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.1e-44 Score=403.44 Aligned_cols=341 Identities=20% Similarity=0.232 Sum_probs=219.4
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
+.|+..++..|+|+|.+++++++.++++|+++|||+|||++|++|++..+.... .....++|||+||++|+.||++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHHH
Confidence 456677899999999999999999999999999999999999999998876521 1223689999999999999999
Q ss_pred HHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCcceEEEccchhccCCCcHHH-HH
Q 007085 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAED-VE 267 (618)
Q Consensus 192 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDEaH~~~~~~~~~~-~~ 267 (618)
+++++++ .+.+..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+...... +.
T Consensus 80 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 80 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9999986 5777888887765555555556799999999999999988766 688999999999999876542222 22
Q ss_pred HHHHH-----CCCCCcEEEEEeeCc-------hHH-HHHHHH---------------------hcCCCcEEEeccCCc-c
Q 007085 268 VILER-----LPQNRQSMMFSATMP-------PWI-RSLTNK---------------------YLKNPLTVDLVGDSD-Q 312 (618)
Q Consensus 268 ~il~~-----l~~~~~~l~lSAT~~-------~~~-~~~~~~---------------------~l~~~~~i~~~~~~~-~ 312 (618)
..+.. .++..++|+|||||. ... ..+... +...|.......... .
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22222 246789999999996 111 111111 111121110000000 0
Q ss_pred c-------------------ccC---------------------------------------------------------
Q 007085 313 K-------------------LAD--------------------------------------------------------- 316 (618)
Q Consensus 313 ~-------------------~~~--------------------------------------------------------- 316 (618)
. ...
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0 000
Q ss_pred --------------------------------CeEEEEE----------------eccCCcchHHHHHHHHHh---hcCC
Q 007085 317 --------------------------------GISLYSI----------------ATSMYEKPSIIGQLITEH---AKGG 345 (618)
Q Consensus 317 --------------------------------~~~~~~~----------------~~~~~~~~~~l~~~l~~~---~~~~ 345 (618)
.+..... ......|...+..++... .++.
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0000000 001334566666777665 2467
Q ss_pred cEEEEecchhHHHHHHHHHHhc-----CCeeee--------cCcCCHHHHHHHHHHHhc-CCccEEEEcCccccCCCCCC
Q 007085 346 KCIVFTQTKRDADRLAHAMAKS-----YNCEPL--------HGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~l--------hg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~GlDi~~ 411 (618)
++||||++++.++.+++.|.+. +++..+ |++|++++|.++++.|++ |+++|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 9999999999999999999764 778888 569999999999999998 99999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 412 VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+++||+||+|+++++|+||+|| ||. +.+.|+++++..+....+.+
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999 998 78999999988776444433
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-43 Score=405.42 Aligned_cols=329 Identities=20% Similarity=0.262 Sum_probs=258.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
.|..+++++.+...+....++.|+|+|.++|+.++.++++|+++|||||||++|++|++..+.. +.++||+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvlvl 233 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYT 233 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEE
Confidence 4556666666666666677888999999999999999999999999999999999999988744 6789999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
+||++|++|+++.+.+.+. .+.+++++.. +...++|+|+||++|.+++.+....+.++++|||||||++.+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~--~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG--DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS--SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cCcHHHHHHHHHHHHHHhC--CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 9999999999999999876 5556666655 345689999999999999988777788999999999999999
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeeCchH--HHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEecc---------CC
Q 007085 260 VGFAEDVEVILERLPQNRQSMMFSATMPPW--IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS---------MY 328 (618)
Q Consensus 260 ~~~~~~~~~il~~l~~~~~~l~lSAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~ 328 (618)
+.+...+..++..+++.+|+|+||||+++. +...+..+...+..+......... +..+..... ..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccc
Confidence 889999999999999999999999999874 335555555555444322111111 111111000 00
Q ss_pred ----------------------------------------c---chHHHHHHHHHhh--cCCcEEEEecchhHHHHHHHH
Q 007085 329 ----------------------------------------E---KPSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHA 363 (618)
Q Consensus 329 ----------------------------------------~---~~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~ 363 (618)
. ....+..++..+. ...++||||++++.|+.++..
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHH
Confidence 0 0223333443332 346899999999999999988
Q ss_pred HHhc-C---------------------------------------CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcc
Q 007085 364 MAKS-Y---------------------------------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 364 L~~~-~---------------------------------------~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
|... + .+..+|++|++.+|+.+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 7431 1 16889999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCC--------ChhHHHHHhccCCCCC--CcceEEEEechh
Q 007085 404 ARGLDVPNVDLIIHYELPN--------TSETFVHRTGRTGRAG--KKGSAILIYTDQ 450 (618)
Q Consensus 404 ~~GlDi~~~~~VI~~~~p~--------~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 450 (618)
++|||+|++++||+++.|+ ++.+|+||+||+||.| ..|.|++++.+.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999877643 6677999999999998 688999998765
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.4e-43 Score=385.03 Aligned_cols=331 Identities=22% Similarity=0.244 Sum_probs=227.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~- 198 (618)
.+|+|+|.++++.++.++++|+++|||+|||++|++|++..+.+. ....+.++|||+||++|+.||++++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKF----PCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC----CSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhc----ccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 469999999999999999999999999999999999999887652 112267899999999999999999999875
Q ss_pred -CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCcceEEEccchhccCCCcH-HHHHHHHHHC--
Q 007085 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFA-EDVEVILERL-- 273 (618)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDEaH~~~~~~~~-~~~~~il~~l-- 273 (618)
.+.+..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+.... ..+...+...
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 5778888888876665555666789999999999999988776 6889999999999999876432 2222333321
Q ss_pred ---CCCCcEEEEEeeCchH-----------HHHHHHHhcCCCcEEEeccCCcccc----c-CCeEEEEEe----------
Q 007085 274 ---PQNRQSMMFSATMPPW-----------IRSLTNKYLKNPLTVDLVGDSDQKL----A-DGISLYSIA---------- 324 (618)
Q Consensus 274 ---~~~~~~l~lSAT~~~~-----------~~~~~~~~l~~~~~i~~~~~~~~~~----~-~~~~~~~~~---------- 324 (618)
.+.+++++|||||+.. +..+.. .+ +...+.......... . .........
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-AL-DASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HT-TCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hc-CCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 2567999999999542 111111 11 111111110000000 0 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007085 325 -------------------------------------------------------------------------------- 324 (618)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (618)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------ccCCcchHHHHHHHHHh---hcCCcEEEEe
Q 007085 325 --------------------------------------------------TSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (618)
Q Consensus 325 --------------------------------------------------~~~~~~~~~l~~~l~~~---~~~~~~lVf~ 351 (618)
.....|...+..++... .+..++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 00123444555555543 2458999999
Q ss_pred cchhHHHHHHHHHHhc-----CCee--------eecCcCCHHHHHHHHHHHhc-CCccEEEEcCccccCCCCCCccEEEE
Q 007085 352 QTKRDADRLAHAMAKS-----YNCE--------PLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 352 ~~~~~~~~l~~~L~~~-----~~~~--------~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~GlDi~~~~~VI~ 417 (618)
++++.++.+++.|.+. +.+. .+|++|++++|.++++.|++ ++++|||||+++++|||+|++++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 9999999999999753 3333 44669999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 418 ~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
||+|+++..|+||+|| ||. +.+.|++++++.+......+
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999 999 89999999998876554444
No 27
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.3e-41 Score=361.57 Aligned_cols=319 Identities=23% Similarity=0.318 Sum_probs=246.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC--C
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~--~ 198 (618)
.|+|+|.++++.++.+ ++|+.+|||+|||++++++++..+.. ...++|||||+++|+.||++++.+++ +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 5999999999999998 99999999999999999998877652 25689999999999999999999987 3
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCc
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
...+..++++......... ...++|+|+||+.|...+....+.+.++++|||||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 4477777777766544333 345799999999999998887788899999999999999876555566666666677899
Q ss_pred EEEEEeeCchH---HHHHHHHhcCCCcEEEeccCCcccc---cC--CeEEEEEe--------------------------
Q 007085 279 SMMFSATMPPW---IRSLTNKYLKNPLTVDLVGDSDQKL---AD--GISLYSIA-------------------------- 324 (618)
Q Consensus 279 ~l~lSAT~~~~---~~~~~~~~l~~~~~i~~~~~~~~~~---~~--~~~~~~~~-------------------------- 324 (618)
+++|||||... +..++..+....... ........ .. ........
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEY--RSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEE--CCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeec--cCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999743 333333222111111 00000000 00 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 007085 325 -------------------------------------------------------------------------------- 324 (618)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (618)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ----------------------ccCCcchHHHHHHHHHh---hcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecC---
Q 007085 325 ----------------------TSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHG--- 375 (618)
Q Consensus 325 ----------------------~~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg--- 375 (618)
.....|...+.+++... ..+.++||||++++.++.+++.|.+. +.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 02233455556666654 35789999999999999999999764 88999999
Q ss_pred -----cCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 376 -----DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 376 -----~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
+|+..+|+++++.|++++++|||||+++++|||+|++++||++++|+++..|+||+||++|.++ +.+++++++.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999877
Q ss_pred hH
Q 007085 451 QA 452 (618)
Q Consensus 451 ~~ 452 (618)
+.
T Consensus 476 t~ 477 (494)
T 1wp9_A 476 TR 477 (494)
T ss_dssp SH
T ss_pred CH
Confidence 54
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.2e-42 Score=388.66 Aligned_cols=331 Identities=20% Similarity=0.251 Sum_probs=206.7
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.++..|+|+|.++++.++.++++|+++|||+|||++|++|++..+.+. +...+.++||||||++|+.||+++++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~----~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC----CSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999887652 1122678999999999999999999998
Q ss_pred CC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCcceEEEccchhccCCCcHHHH-HHHHHH
Q 007085 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILER 272 (618)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDEaH~~~~~~~~~~~-~~il~~ 272 (618)
++ .+.+..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+......+ ..++..
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 76 6788888888876666666667899999999999999987766 6889999999999999876433322 222222
Q ss_pred ----CCCCCcEEEEEeeCch-----------HHHHHHHH------------------hcCCCcEEEe-ccC-Cccc----
Q 007085 273 ----LPQNRQSMMFSATMPP-----------WIRSLTNK------------------YLKNPLTVDL-VGD-SDQK---- 313 (618)
Q Consensus 273 ----l~~~~~~l~lSAT~~~-----------~~~~~~~~------------------~l~~~~~i~~-~~~-~~~~---- 313 (618)
..+.+++|+|||||.. .+..+... ++..+..... ... ....
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1456899999999952 22222111 1111111110 000 0000
Q ss_pred ----------c-cCCeE---EEEE--------------------------------------------------------
Q 007085 314 ----------L-ADGIS---LYSI-------------------------------------------------------- 323 (618)
Q Consensus 314 ----------~-~~~~~---~~~~-------------------------------------------------------- 323 (618)
. ...+. ....
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00000 0000
Q ss_pred ------------------------------------------------eccCCcchHHHHHHHHHh---hcCCcEEEEec
Q 007085 324 ------------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFTQ 352 (618)
Q Consensus 324 ------------------------------------------------~~~~~~~~~~l~~~l~~~---~~~~~~lVf~~ 352 (618)
......|...+..++... .++.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 000122444455555442 34689999999
Q ss_pred chhHHHHHHHHHHhc-------------CCeeeecCcCCHHHHHHHHHHHhc-CCccEEEEcCccccCCCCCCccEEEEc
Q 007085 353 TKRDADRLAHAMAKS-------------YNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIHY 418 (618)
Q Consensus 353 ~~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~GlDi~~~~~VI~~ 418 (618)
+++.++.+++.|.+. ..+..+|++|++.+|.++++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999752 244566888999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 419 ELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 419 ~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
|+|+++..|+||+|| ||. +++.|++++++.+..
T Consensus 720 d~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999 999 899999999876553
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-41 Score=384.38 Aligned_cols=316 Identities=21% Similarity=0.291 Sum_probs=246.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
++|+|+|.++++.+.+++++||++|||+|||++|+++++..+.. +.++||++|+++|++|+++++.+.+.
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 45999999999999999999999999999999999998877643 67899999999999999999999876
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcE
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~ 279 (618)
.+.+++|+... ...++|+|+||++|.+++.+....+.++++|||||+|++.++.+...+..++..+++++++
T Consensus 155 -~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 55666666553 2357999999999999888877778999999999999999998999999999999999999
Q ss_pred EEEEeeCchHHH--HHHHHhcCCCcEEEeccCCcccccCCeEEEEEec---------cCCc-------------------
Q 007085 280 MMFSATMPPWIR--SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT---------SMYE------------------- 329 (618)
Q Consensus 280 l~lSAT~~~~~~--~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------- 329 (618)
|+||||+++... ..+......+..+....... ..+..+.... +...
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 999999987532 22322333343332211111 0111111110 0000
Q ss_pred ----------------c--------hHHHHHHHHHhh--cCCcEEEEecchhHHHHHHHHHHhc-C--------------
Q 007085 330 ----------------K--------PSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAKS-Y-------------- 368 (618)
Q Consensus 330 ----------------~--------~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~-------------- 368 (618)
+ ...+..++.... ...++||||++++.|+.+++.|.+. +
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 0 122333333322 3458999999999999999887541 1
Q ss_pred -------------------------CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----cC
Q 007085 369 -------------------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YE 419 (618)
Q Consensus 369 -------------------------~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~~ 419 (618)
.+..+|++|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 2678999999999999999999999999999999999999999999999 99
Q ss_pred C----CCChhHHHHHhccCCCCCC--cceEEEEechh-hHHHHHH
Q 007085 420 L----PNTSETFVHRTGRTGRAGK--KGSAILIYTDQ-QARQVKS 457 (618)
Q Consensus 420 ~----p~~~~~~~Qr~GR~gR~g~--~g~~~~~~~~~-~~~~~~~ 457 (618)
. |.++.+|+||+||+||.|. .|.|++++.+. +...+..
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 8 8899999999999999986 59999999865 4333333
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.4e-41 Score=388.36 Aligned_cols=324 Identities=21% Similarity=0.301 Sum_probs=251.2
Q ss_pred HHHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 109 DIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 109 ~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
++.+.+.. .++ +|||+|.++++.+++++|+|+++|||||||++++++++..+. .++++|||+||++|+.
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHH
Confidence 34445544 455 699999999999999999999999999999988888777652 2678999999999999
Q ss_pred HHHHHHHHhC-CCCceEEEEcCCch---HHHHHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC---
Q 007085 188 QVEKEFHESA-PSLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (618)
Q Consensus 188 q~~~~l~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~--- 259 (618)
|+++.++++. ..+.+..++++.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 136 Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 136 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp HHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSH
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccc
Confidence 9999999965 34678888888876 4455556555 99999999999887764 5578999999999987654
Q ss_pred --------CCcHHH-HHHHHHHCC-----------CCCcEEEEEee-CchHHHH-HHHHhcCCCcEEEeccCCcccccCC
Q 007085 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIRS-LTNKYLKNPLTVDLVGDSDQKLADG 317 (618)
Q Consensus 260 --------~~~~~~-~~~il~~l~-----------~~~~~l~lSAT-~~~~~~~-~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (618)
++|... +..++..++ .+.|+++|||| .|..+.. +...++. +.+. ........
T Consensus 214 ~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~ 287 (1104)
T 4ddu_A 214 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARN 287 (1104)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCC
T ss_pred cchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCC
Confidence 667777 888888877 78999999999 4544332 2233322 1111 11122233
Q ss_pred eEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCee-eecCcCCHHHHHHHHHHHhcCCcc
Q 007085 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE-PLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
+.+..... .+...+..++... +.++||||++++.++.+++.|.+ .+.+. .+|+. |++ ++.|++|+.+
T Consensus 288 i~~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~ 356 (1104)
T 4ddu_A 288 ITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKIN 356 (1104)
T ss_dssp EEEEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCS
T ss_pred ceeEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCC
Confidence 44443333 4666677777763 47999999999999999999976 48888 99983 555 9999999999
Q ss_pred EEEE----cCccccCCCCCC-ccEEEEcCCCC------------------------------------------------
Q 007085 396 ILIA----TDVAARGLDVPN-VDLIIHYELPN------------------------------------------------ 422 (618)
Q Consensus 396 vLVa----T~~~~~GlDi~~-~~~VI~~~~p~------------------------------------------------ 422 (618)
|||| |+++++|||+|+ +++||+||+|.
T Consensus 357 VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~ 436 (1104)
T 4ddu_A 357 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKE 436 (1104)
T ss_dssp EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHH
T ss_pred EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 9999 999999999999 99999999998
Q ss_pred ------------------------ChhHHHHHhccCCCCCC----cceEEEEechhhHHHHHHHHHHhc
Q 007085 423 ------------------------TSETFVHRTGRTGRAGK----KGSAILIYTDQQARQVKSIERDVG 463 (618)
Q Consensus 423 ------------------------~~~~~~Qr~GR~gR~g~----~g~~~~~~~~~~~~~~~~l~~~l~ 463 (618)
++..|+||+||++|.+. +|.+++++ .|...++.|++.+.
T Consensus 437 ~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 437 FVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999653 45555555 66667777777664
No 31
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.4e-40 Score=383.43 Aligned_cols=322 Identities=16% Similarity=0.229 Sum_probs=253.9
Q ss_pred CCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC----CC--CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----GR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----~~--~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
.++++....+.+......++||+|.++++.+++ ++ ++|++++||+|||++|+++++..+.. +.++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~v 655 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQV 655 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEE
T ss_pred CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCeE
Confidence 345677777777665455689999999999886 44 89999999999999999888876533 6799
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHH---HHhhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 177 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~---~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
+|+|||++|++||++++.+++.. +.+..+++........ ..+.. .++|+|+||+.|. ..+.+.++++||
T Consensus 656 lvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvI 730 (1151)
T 2eyq_A 656 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLI 730 (1151)
T ss_dssp EEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEE
T ss_pred EEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEE
Confidence 99999999999999999988764 4556665555544332 22333 5999999998663 346688999999
Q ss_pred EccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcc
Q 007085 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (618)
|||+|++ ......++..++.+.++|+|||||++....+....+.++..+. .... ....+..+... ..+
T Consensus 731 iDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~---~~~~-~r~~i~~~~~~---~~~ 798 (1151)
T 2eyq_A 731 VDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA---TPPA-RRLAVKTFVRE---YDS 798 (1151)
T ss_dssp EESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC---CCCC-BCBCEEEEEEE---CCH
T ss_pred EechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe---cCCC-CccccEEEEec---CCH
Confidence 9999994 4556677777778899999999998877666555544333221 1111 11122222222 223
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc---CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gl 407 (618)
..+...++.+...+++++|||++++.++.+++.|.+. +.+..+||+|++.+|+++++.|++++++|||||+++++||
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 4556666677777889999999999999999999764 6799999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCC-CCChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 408 DVPNVDLIIHYEL-PNTSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 408 Di~~~~~VI~~~~-p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|+|++++||++++ ++++.+|+||+||+||.++++.|++++.+.
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999998 469999999999999999999999998764
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-40 Score=382.61 Aligned_cols=331 Identities=20% Similarity=0.248 Sum_probs=204.7
Q ss_pred HcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
-.++..|+|+|.++++.++.++++|+++|||+|||++|++|++..+.+. ....+.++|||+||++|+.||++++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~----~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC----CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999998776441 112267899999999999999999999
Q ss_pred hCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC-CCCCcceEEEccchhccCCCcHHH-HHHHHH
Q 007085 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAED-VEVILE 271 (618)
Q Consensus 196 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~~~~vViDEaH~~~~~~~~~~-~~~il~ 271 (618)
+++ .+.+..++++.....+...+...++|+|+||++|.+.+....+ .+.++++|||||||++.+...... +..++.
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 875 6778888888766655555556689999999999999987766 688899999999999987643222 222222
Q ss_pred H----CCCCCcEEEEEeeCch-----------HHHHHHH------------------HhcCCCcEEEeccCC-cc-c---
Q 007085 272 R----LPQNRQSMMFSATMPP-----------WIRSLTN------------------KYLKNPLTVDLVGDS-DQ-K--- 313 (618)
Q Consensus 272 ~----l~~~~~~l~lSAT~~~-----------~~~~~~~------------------~~l~~~~~i~~~~~~-~~-~--- 313 (618)
. ..+..++++|||||.. .+..+.. .++..+......... .. .
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1456899999999952 1212111 111222221110000 00 0
Q ss_pred -----------c-cCC--------eEEEEE--------------------------------------------------
Q 007085 314 -----------L-ADG--------ISLYSI-------------------------------------------------- 323 (618)
Q Consensus 314 -----------~-~~~--------~~~~~~-------------------------------------------------- 323 (618)
. ... +.....
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000 000000
Q ss_pred -------------------------------------------------eccCCcchHHHHHHHHHh---hcCCcEEEEe
Q 007085 324 -------------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (618)
Q Consensus 324 -------------------------------------------------~~~~~~~~~~l~~~l~~~---~~~~~~lVf~ 351 (618)
......|...+..++.+. .++.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 000122344445555543 3468999999
Q ss_pred cchhHHHHHHHHHHhc-----C--------CeeeecCcCCHHHHHHHHHHHhc-CCccEEEEcCccccCCCCCCccEEEE
Q 007085 352 QTKRDADRLAHAMAKS-----Y--------NCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLIIH 417 (618)
Q Consensus 352 ~~~~~~~~l~~~L~~~-----~--------~~~~lhg~~~~~~r~~i~~~f~~-g~~~vLVaT~~~~~GlDi~~~~~VI~ 417 (618)
++++.++.+++.|.+. + .+..+|++|++.+|.++++.|++ |+++|||||+++++|||+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999753 2 34456888999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 418 YELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 418 ~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
||+|+|+..|+||+|| ||. +++.|+++++..+.
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999999 999 78899999887544
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=382.70 Aligned_cols=316 Identities=22% Similarity=0.308 Sum_probs=220.4
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH-HHHHHHhCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAP 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~-~~~l~~~~~ 198 (618)
..|+|+|.++++.++.++++||++|||+|||++|++|++..+...... ....++|||+|+++|+.|| +++++++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH---TCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---CCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 469999999999999999999999999999999999999888764321 1236799999999999999 999999887
Q ss_pred C-CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHH------HhcCCCCCCcceEEEccchhccCCCc-HHHHHHHH
Q 007085 199 S-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI------KRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVIL 270 (618)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l------~~~~~~~~~~~~vViDEaH~~~~~~~-~~~~~~il 270 (618)
. +.+..++++.........+...++|+|+||++|.+.+ ....+.+.++++|||||||++..... ...+..++
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 6 7888888877665555555677999999999999887 44556788999999999999865432 22222222
Q ss_pred HH----C---------CCCCcEEEEEeeCchH-----------HHHHHHHhc------------------CCCcEE-Eec
Q 007085 271 ER----L---------PQNRQSMMFSATMPPW-----------IRSLTNKYL------------------KNPLTV-DLV 307 (618)
Q Consensus 271 ~~----l---------~~~~~~l~lSAT~~~~-----------~~~~~~~~l------------------~~~~~i-~~~ 307 (618)
.. . .+.+++|+|||||... +..+...+. ..|... ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 1 1678999999999862 222221111 111110 000
Q ss_pred cCCcccc--------------------cCCeE------------------------------------------------
Q 007085 308 GDSDQKL--------------------ADGIS------------------------------------------------ 319 (618)
Q Consensus 308 ~~~~~~~--------------------~~~~~------------------------------------------------ 319 (618)
....... .....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000
Q ss_pred ------------------------E-EEE------------------------eccCCcchHHHHHHHHHhh---c-CCc
Q 007085 320 ------------------------L-YSI------------------------ATSMYEKPSIIGQLITEHA---K-GGK 346 (618)
Q Consensus 320 ------------------------~-~~~------------------------~~~~~~~~~~l~~~l~~~~---~-~~~ 346 (618)
. ..+ ......|...+..++.... + ..+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0 000 0001122222333333321 2 689
Q ss_pred EEEEecchhHHHHHHHHHHhc-------CCeeeecCc--------CCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC
Q 007085 347 CIVFTQTKRDADRLAHAMAKS-------YNCEPLHGD--------ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (618)
Q Consensus 347 ~lVf~~~~~~~~~l~~~L~~~-------~~~~~lhg~--------~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~ 411 (618)
+||||++++.++.+++.|.+. +.+..+||+ |++.+|.++++.|++|+++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999863 889999999 99999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHhccCCCCC
Q 007085 412 VDLIIHYELPNTSETFVHRTGRTGRAG 438 (618)
Q Consensus 412 ~~~VI~~~~p~~~~~~~Qr~GR~gR~g 438 (618)
+++||+||+|+|+..|+||+||++|.|
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 999999999999999999999986654
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.1e-40 Score=385.65 Aligned_cols=324 Identities=19% Similarity=0.298 Sum_probs=249.8
Q ss_pred HHHHHHH-cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH
Q 007085 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (618)
Q Consensus 110 l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q 188 (618)
+.+.+.+ .++. | |+|.++|+.++.++|+|+++|||||||+ |++|++..+.. .++++|||+||++|+.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 3344443 6888 9 9999999999999999999999999998 88888877643 26789999999999999
Q ss_pred HHHHHHHhCCC--C----ceEEEEcCCchHHH---HHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 189 VEKEFHESAPS--L----DTICVYGGTPISHQ---MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 189 ~~~~l~~~~~~--~----~~~~~~~~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
+++.+++++.. + .+.+++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||++++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 99999988753 4 56777888776653 344455 99999999999987654 66899999999999988
Q ss_pred CCcHHHHHHHHHHCC-----------CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCC
Q 007085 260 VGFAEDVEVILERLP-----------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328 (618)
Q Consensus 260 ~~~~~~~~~il~~l~-----------~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 328 (618)
+...+..++..+. ...|++++|||+++. ..+...++.++..+.+. ........+.+... ..
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~ 261 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---ND 261 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SC
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---ch
Confidence 5788888888773 568899999999886 43333333222222211 11112223333333 24
Q ss_pred cchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEE----cCccc
Q 007085 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA----TDVAA 404 (618)
Q Consensus 329 ~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVa----T~~~~ 404 (618)
.+...+..+++.. +.++||||++++.++.+++.|.+.+.+..+|+++ +++++.|++|+.+|||| |++++
T Consensus 262 ~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 262 ESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp CCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------
T ss_pred hHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeE
Confidence 5566666776654 5689999999999999999997668999999998 37889999999999999 99999
Q ss_pred cCCCCCCc-cEEEEcCCC--------------------------------------------------------------
Q 007085 405 RGLDVPNV-DLIIHYELP-------------------------------------------------------------- 421 (618)
Q Consensus 405 ~GlDi~~~-~~VI~~~~p-------------------------------------------------------------- 421 (618)
+|||+|+| ++||++++|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999995 999999999
Q ss_pred ---------CChhHHHHHhccCCCCCCcc--eEEEEechhhHHHHHHHHHHhcC
Q 007085 422 ---------NTSETFVHRTGRTGRAGKKG--SAILIYTDQQARQVKSIERDVGC 464 (618)
Q Consensus 422 ---------~~~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 464 (618)
.+..+|+||+||++|.++.| .+++++...+...+..|++.+..
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999977665 47777777777888888887764
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.1e-39 Score=373.70 Aligned_cols=310 Identities=21% Similarity=0.266 Sum_probs=236.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
++|+++|.++|+.+++++++++++|||+|||++|+++++..+.. +.++||++|+++|+.|+++++.+.++.
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~~~~~ 108 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKETFDD 108 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 45999999999999999999999999999999999988776533 678999999999999999999998877
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcE
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~ 279 (618)
+.+..++++... ...++|+|+||++|.+.+......+.++++|||||||++.++++...+..++..++++.++
T Consensus 109 ~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 888888877652 3457999999999999888877778899999999999999999999999999999999999
Q ss_pred EEEEeeCchHHHHHHHHh---cCCCcEEEeccCCcccccCCe--------------------------------------
Q 007085 280 MMFSATMPPWIRSLTNKY---LKNPLTVDLVGDSDQKLADGI-------------------------------------- 318 (618)
Q Consensus 280 l~lSAT~~~~~~~~~~~~---l~~~~~i~~~~~~~~~~~~~~-------------------------------------- 318 (618)
|+||||+++.. .+...+ ...+..+.............+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPS 260 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccc
Confidence 99999998653 222211 111111110000000000000
Q ss_pred ---------------------------------------------------EEEEEeccCCcchHHHHHHHHHhhcCCcE
Q 007085 319 ---------------------------------------------------SLYSIATSMYEKPSIIGQLITEHAKGGKC 347 (618)
Q Consensus 319 ---------------------------------------------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 347 (618)
..+........+...+...+... ...++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~~~ 339 (997)
T 4a4z_A 261 KTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELLPM 339 (997)
T ss_dssp --------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCCSE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCCCE
Confidence 00000001112222333333332 34699
Q ss_pred EEEecchhHHHHHHHHHHhc-C---------------------------------------CeeeecCcCCHHHHHHHHH
Q 007085 348 IVFTQTKRDADRLAHAMAKS-Y---------------------------------------NCEPLHGDISQSQRERTLS 387 (618)
Q Consensus 348 lVf~~~~~~~~~l~~~L~~~-~---------------------------------------~~~~lhg~~~~~~r~~i~~ 387 (618)
||||++++.|+.+++.|.+. + .+..+|++|++.+|+.+++
T Consensus 340 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 340 VVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp EEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 99999999999999888541 1 4788999999999999999
Q ss_pred HHhcCCccEEEEcCccccCCCCCCccEEEEcCCCC---------ChhHHHHHhccCCCCC--CcceEEEEec
Q 007085 388 AFRDGRFNILIATDVAARGLDVPNVDLIIHYELPN---------TSETFVHRTGRTGRAG--KKGSAILIYT 448 (618)
Q Consensus 388 ~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~---------~~~~~~Qr~GR~gR~g--~~g~~~~~~~ 448 (618)
.|++|.++|||||+++++|||+|+ ..||+++.+. ++.+|+||+|||||.| ..|.|++++.
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999 6666655555 9999999999999987 5677888873
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.3e-40 Score=356.34 Aligned_cols=320 Identities=18% Similarity=0.216 Sum_probs=242.4
Q ss_pred HcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..++ .|+|+|..+++.++.++ |.+++||+|||++|.+|++...+. +..++||+||++||.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 4688 89999999999999998 999999999999999999854332 56799999999999999998887
Q ss_pred hCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCcceEEEccchhcc-CCC----
Q 007085 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SVG---- 261 (618)
Q Consensus 196 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~-~~~---- 261 (618)
++. ++.+.+++++.+...+. ....++|+|+||++| ++++... .+.+..+.++||||||+|+ ++.
T Consensus 147 l~~~lgl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 653 67888888887755433 345689999999999 6666543 3567889999999999987 653
Q ss_pred -----------cHHHHHHHHHHCCC---------CCcEE-----------------EEEeeCchHHHHH---H--HHhcC
Q 007085 262 -----------FAEDVEVILERLPQ---------NRQSM-----------------MFSATMPPWIRSL---T--NKYLK 299 (618)
Q Consensus 262 -----------~~~~~~~il~~l~~---------~~~~l-----------------~lSAT~~~~~~~~---~--~~~l~ 299 (618)
|...+..++..+++ .+|++ ++|||.+.....+ + ..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 67888999999873 67777 8899987433332 1 22221
Q ss_pred -CCcEE------EeccCCcccc----------------------------cCCeE-------------------------
Q 007085 300 -NPLTV------DLVGDSDQKL----------------------------ADGIS------------------------- 319 (618)
Q Consensus 300 -~~~~i------~~~~~~~~~~----------------------------~~~~~------------------------- 319 (618)
+...+ .++......+ ...+.
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 11111 1111000000 00000
Q ss_pred ----------------------EEEEeccCCcchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecC
Q 007085 320 ----------------------LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHG 375 (618)
Q Consensus 320 ----------------------~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg 375 (618)
...+......|...+...+.. +..+.++||||++++.++.|++.|.+ .+++.++|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 001222334456666665554 34677999999999999999999976 499999999
Q ss_pred cCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC--------CccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVP--------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 376 ~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~--------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
++.+.++..+...++.+ .|+|||++++||+||+ .+.+||+++.|.+...|+||+||+||.|.+|.+++|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 99888887666666555 6999999999999999 7889999999999999999999999999999999999
Q ss_pred chhh
Q 007085 448 TDQQ 451 (618)
Q Consensus 448 ~~~~ 451 (618)
+..|
T Consensus 543 s~eD 546 (844)
T 1tf5_A 543 SMED 546 (844)
T ss_dssp ETTS
T ss_pred cHHH
Confidence 8765
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-37 Score=372.06 Aligned_cols=338 Identities=18% Similarity=0.258 Sum_probs=249.6
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
+.+...+.+...+|..++|+|.++++.++. ++|+++++|||||||++|.+|++..+.+ ..+.++||++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHH
Confidence 445666777777899999999999999975 5789999999999999999999999876 23568999999999
Q ss_pred HHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC--CCCCcceEEEccchhccC
Q 007085 185 LAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 185 La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--~~~~~~~vViDEaH~~~~ 259 (618)
|++|.++++.+.+. ++++..++|+...... ....++|+||||+++..++.+... .+.++++||+||+|++.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 99999999987542 3456666665543322 223479999999999777655322 367899999999998877
Q ss_pred CCcHHHHHHHHHH-------CCCCCcEEEEEeeCchHHHHHHHHhcC-CCcEEEeccCCcccccCCeEEEEEeccCCcc-
Q 007085 260 VGFAEDVEVILER-------LPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK- 330 (618)
Q Consensus 260 ~~~~~~~~~il~~-------l~~~~~~l~lSAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 330 (618)
. .+..++.++.+ +++++|+|+||||+++. .++ ..|+. ++..+..+..... ...++.+.........
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dl-a~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDV-AHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHH-HHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHH-HHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCch
Confidence 5 56666655544 46789999999999873 333 34443 2222211111111 1112222222222111
Q ss_pred ------hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-----------------------------------cCC
Q 007085 331 ------PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----------------------------------SYN 369 (618)
Q Consensus 331 ------~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~ 369 (618)
...+...+....+.+++||||++++.|+.++..|.+ ...
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~G 1215 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNG 1215 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCC
Confidence 223344555666788999999999999988876632 124
Q ss_pred eeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----c------CCCCChhHHHHHhccCCCCCC
Q 007085 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----Y------ELPNTSETFVHRTGRTGRAGK 439 (618)
Q Consensus 370 ~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~------~~p~~~~~~~Qr~GR~gR~g~ 439 (618)
+..+|++|++.+|+.+++.|++|.++|||||+++++|||+|+..+||. | ..|.++.+|+||+|||||.|.
T Consensus 1216 Ia~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~ 1295 (1724)
T 4f92_B 1216 VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQ 1295 (1724)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCC
Confidence 778999999999999999999999999999999999999999888883 2 236789999999999999875
Q ss_pred --cceEEEEechhhHHHHHHH
Q 007085 440 --KGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 440 --~g~~~~~~~~~~~~~~~~l 458 (618)
.|.|++++.+.+...++.+
T Consensus 1296 d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1296 DDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp CSCEEEEEEEEGGGHHHHHHH
T ss_pred CCceEEEEEecchHHHHHHHH
Confidence 7899999998877665544
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.5e-38 Score=343.05 Aligned_cols=310 Identities=14% Similarity=0.157 Sum_probs=227.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh--C
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES--A 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~--~ 197 (618)
.+|+|+|.++++.++++++++++++||+|||++++++++..+.. ...++|||+|+++|+.||++++.++ +
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 47999999999999999999999999999999999888877653 1348999999999999999999887 4
Q ss_pred CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
+...+..++++.....+ +...++|+|+||+.|... ....+.++++|||||+|++.. ..+..++..+.+..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 44566777766554433 445689999999977542 224467899999999999853 66778888888889
Q ss_pred cEEEEEeeCchHHHHHHH-HhcCCCcEEEeccCC--cccccCCeEEE--EEecc---------------------CCcch
Q 007085 278 QSMMFSATMPPWIRSLTN-KYLKNPLTVDLVGDS--DQKLADGISLY--SIATS---------------------MYEKP 331 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~~~-~~l~~~~~i~~~~~~--~~~~~~~~~~~--~~~~~---------------------~~~~~ 331 (618)
++|+|||||++....... ..+..+..+...... ........... ..... ...+.
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 999999999765422211 111122221111000 00000011111 11100 01122
Q ss_pred HHHHHHHHHh-hc-CCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEc-CccccCC
Q 007085 332 SIIGQLITEH-AK-GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARGL 407 (618)
Q Consensus 332 ~~l~~~l~~~-~~-~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT-~~~~~Gl 407 (618)
..+..++... .. ..++||||+ ++.++.+++.|.+. ..+..+||+|++.+|+++++.|++++.+||||| +++++||
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 2333444433 22 334555555 89999999999764 689999999999999999999999999999999 9999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEec
Q 007085 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 408 Di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|+|++++||++++|+++.+|+|++||+||.++.+.++++++
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999988774444443
No 39
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.4e-38 Score=342.81 Aligned_cols=318 Identities=21% Similarity=0.234 Sum_probs=219.0
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.+. .|+++|..+++.++.++ |.+++||+|||++|++|++...+. +++++||+||++||.|+++++..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 354 69999999999999987 999999999999999999865432 568999999999999999998876
Q ss_pred CC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhcc-CC------
Q 007085 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML-SV------ 260 (618)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~-~~------ 260 (618)
+. ++.+.+++++.+... +.+...++|+|+||++| ++++.... +.+.++.++||||||+|+ +.
T Consensus 139 ~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 53 577888888887543 33445689999999999 78876542 567899999999999998 43
Q ss_pred ---------CcHHHHHHHHHHCCC--------------------CCcEE------------------------EEEeeCc
Q 007085 261 ---------GFAEDVEVILERLPQ--------------------NRQSM------------------------MFSATMP 287 (618)
Q Consensus 261 ---------~~~~~~~~il~~l~~--------------------~~~~l------------------------~lSAT~~ 287 (618)
++...+..++..+++ .+|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 256677788887764 44543 7899976
Q ss_pred hHHHHH---H--HHhcC--------CC-----------------------------cEEEeccCCcccccCCeE------
Q 007085 288 PWIRSL---T--NKYLK--------NP-----------------------------LTVDLVGDSDQKLADGIS------ 319 (618)
Q Consensus 288 ~~~~~~---~--~~~l~--------~~-----------------------------~~i~~~~~~~~~~~~~~~------ 319 (618)
+....+ + ..++. +. ..+.+.. +......+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~--e~~tla~It~qnyfr 374 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQN--ENQTLASITFQNYFR 374 (853)
T ss_dssp ------------------------------------------------------------CCC--CCEEEEEEEHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecc--cccccceeehHHHHh
Confidence 422221 1 11110 00 0010000 000000000
Q ss_pred -----------------------------------------EEEEeccCCcchHHHHHHHHH-hhcCCcEEEEecchhHH
Q 007085 320 -----------------------------------------LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDA 357 (618)
Q Consensus 320 -----------------------------------------~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~ 357 (618)
...+......|...+...+.. +..+.++||||++++.+
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~s 454 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKS 454 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 001223444566666666654 34678999999999999
Q ss_pred HHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc------------------------
Q 007085 358 DRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------ 412 (618)
Q Consensus 358 ~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~------------------------ 412 (618)
+.|++.|.+ .+++.++|+++.+.++..+..+|+.| .|+|||++++||+||+..
T Consensus 455 e~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 455 ELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp HHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 999999976 59999999999888888888888888 599999999999999873
Q ss_pred -------------cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 413 -------------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 -------------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
.+||+++.|.+...|.||+||+||.|.+|.+++|++..|.
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987763
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-38 Score=342.37 Aligned_cols=291 Identities=20% Similarity=0.227 Sum_probs=217.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|+|+|.++++.+++++++|+++|||+|||++|+.++... +.++|||||+++|+.||++++.++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 46999999999999999999999999999999998887654 457999999999999999999994 4
Q ss_pred Cc-eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCc
Q 007085 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
+. +.+++++.. ...+|+|+||+.+...+... ..++++|||||+|++.+..+.. ++..+ +..+
T Consensus 158 ~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 66 555555443 24799999999998766531 2469999999999998876543 44444 4678
Q ss_pred EEEEEeeCchH-------------------HHHHHHHhcCCCcEEEeccCCccc---c---------------------c
Q 007085 279 SMMFSATMPPW-------------------IRSLTNKYLKNPLTVDLVGDSDQK---L---------------------A 315 (618)
Q Consensus 279 ~l~lSAT~~~~-------------------~~~~~~~~l~~~~~i~~~~~~~~~---~---------------------~ 315 (618)
+|+|||||... ...+...++..+..+.+....... . .
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999999731 222222222221111100000000 0 0
Q ss_pred CCeEEE---------------------EEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCCeeeec
Q 007085 316 DGISLY---------------------SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLH 374 (618)
Q Consensus 316 ~~~~~~---------------------~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lh 374 (618)
..+... .+......|...+.+++... .+.++||||++++.++.+++.| .+..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l----~~~~~~ 375 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF----LIPAIT 375 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT----TCCBCC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHh----Ccceee
Confidence 000000 00011223456666677663 5789999999999999999887 367899
Q ss_pred CcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCc-ceEEEE
Q 007085 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKK-GSAILI 446 (618)
Q Consensus 375 g~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~-g~~~~~ 446 (618)
++++..+|+++++.|++++++|||||+++++|+|+|++++||++++|+++..|+|++||++|.++. ..++++
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999855 455443
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.8e-39 Score=352.86 Aligned_cols=314 Identities=17% Similarity=0.178 Sum_probs=229.5
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+.+++.+.+.+... ...++|+|+.+++.+++++++|++++||||||++|++|++..+.. .+.++||++||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTR 225 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChH
Confidence 44555555544432 366788888889999999999999999999999999999988765 256899999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcH
Q 007085 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 184 ~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
+||.|+++.+... .+. +...... .....+..+.++|.+.+.+.+... ..+.++++|||||||++ +..+.
T Consensus 226 eLa~Qi~~~l~~~----~v~--~~~~~l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 226 VVAAEMEEALRGL----PIR--YQTPAVK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHHHHTTTS----CEE--ECCTTSS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHHHHhcCC----cee--Eecccce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHH
Confidence 9999999888632 222 1111100 011223567788999887766654 34889999999999998 55577
Q ss_pred HHHHHHHHHCC-CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhh
Q 007085 264 EDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (618)
Q Consensus 264 ~~~~~il~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 342 (618)
..+..++..++ +++|+|+||||+++.+..+.. .++..+.+.... .......++..+. +
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~l~-~-- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDWIT-D-- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHHHH-H--
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHHHH-h--
Confidence 77777777765 689999999999875432211 123322221110 0011111222222 2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEE------
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLI------ 415 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~V------ 415 (618)
...++||||++++.++.+++.|.+. +.+..+|+. +|+++++.|++|+.+|||||+++++|||+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 3569999999999999999999764 889999984 788899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCChhHHHHHhccCCCCC-CcceEEEEec---hhhHHHHHHHHHHhc
Q 007085 416 --------------IHYELPNTSETFVHRTGRTGRAG-KKGSAILIYT---DQQARQVKSIERDVG 463 (618)
Q Consensus 416 --------------I~~~~p~~~~~~~Qr~GR~gR~g-~~g~~~~~~~---~~~~~~~~~l~~~l~ 463 (618)
|+++.|.+.++|+||+||+||.+ .++.|++|++ +.+...+..+++.+.
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~ 494 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKML 494 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhc
Confidence 77778999999999999999996 4899999997 666666666766553
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9.1e-37 Score=330.66 Aligned_cols=319 Identities=18% Similarity=0.233 Sum_probs=243.5
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.++ .|+++|..+++.++.++ |.+++||+|||++|.+|++...+. +..++||+||++||.|.++++..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 577 79999999999999987 999999999999999999755433 567999999999999999988776
Q ss_pred CC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhc------CCCCCCcceEEEccchhcc-CC------
Q 007085 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SV------ 260 (618)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~-~~------ 260 (618)
+. ++.+.+++++.+...+ .....++|+|+||++| ++++... .+.+..+.++||||||+|+ ++
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 53 5778888888775433 3344689999999999 7777654 3567889999999999998 32
Q ss_pred ---------CcHHHHHHHHHHCC---------CCCcEE-----------------EEEeeCchHHHHH---H--HHhcC-
Q 007085 261 ---------GFAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIRSL---T--NKYLK- 299 (618)
Q Consensus 261 ---------~~~~~~~~il~~l~---------~~~~~l-----------------~lSAT~~~~~~~~---~--~~~l~- 299 (618)
+|...+..++..++ +.+|++ ++|||.++....+ + ..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47789999999997 678888 8899987533322 1 11221
Q ss_pred C-------CcEEEeccCCccc----------------------------ccCCeE-------------------------
Q 007085 300 N-------PLTVDLVGDSDQK----------------------------LADGIS------------------------- 319 (618)
Q Consensus 300 ~-------~~~i~~~~~~~~~----------------------------~~~~~~------------------------- 319 (618)
+ ...+ ++...... ....+.
T Consensus 334 d~dYiV~dg~vv-iVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 334 DKDYIVRDGEVL-IVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp TTTEEECSSCEE-EBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred ccceeeecCceE-EEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 1 1111 11110000 000000
Q ss_pred ----------------------EEEEeccCCcchHHHHHHHHH-hhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecC
Q 007085 320 ----------------------LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHG 375 (618)
Q Consensus 320 ----------------------~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg 375 (618)
...+......|...+...+.. +..+.++||||.+++.++.|++.|.+ .+++.++|+
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLna 492 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA 492 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecC
Confidence 001222334466566555544 45677999999999999999999976 599999999
Q ss_pred cCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCc-------------------------------------------
Q 007085 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------------------------- 412 (618)
Q Consensus 376 ~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~------------------------------------------- 412 (618)
++.+.++..+...|+.| .|+|||++++||+||+..
T Consensus 493 k~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 493 KYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp SCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 98888877777888877 699999999999999975
Q ss_pred ---------cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 413 ---------DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 413 ---------~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
.+||+++.|.+...|.||+||+||.|.+|.+++|++..|.
T Consensus 571 ~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999987765
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.7e-37 Score=367.60 Aligned_cols=333 Identities=20% Similarity=0.292 Sum_probs=241.4
Q ss_pred CCCCChHHHHHHHHHHh-CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc--CCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 118 GISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~--~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+|..|+++|.++++.++ .++|+|++||||||||++|.++++..+.+..... ....+.++|||+|+++|++|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68899999999999877 4789999999999999999999999987633221 12346789999999999999999998
Q ss_pred HhCCC--CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCC--CCCCcceEEEccchhccCCCcHHHHHHHH
Q 007085 195 ESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (618)
Q Consensus 195 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--~~~~~~~vViDEaH~~~~~~~~~~~~~il 270 (618)
+.+.. +.+..++|+.....+ ....++|+||||+++..++.+... .+.++++|||||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 87654 456667777654322 124589999999998665544321 267899999999998766 4677766665
Q ss_pred HH-------CCCCCcEEEEEeeCchHHHHHHHHhcCCC-c-EEEeccCCcccccCCeEEEEEeccCCcc---hHH----H
Q 007085 271 ER-------LPQNRQSMMFSATMPPWIRSLTNKYLKNP-L-TVDLVGDSDQKLADGISLYSIATSMYEK---PSI----I 334 (618)
Q Consensus 271 ~~-------l~~~~~~l~lSAT~~~~~~~~~~~~l~~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----l 334 (618)
.+ ++++.|+|+||||+++. .+ +..|+... . .+..+.. ..+ ...+............ ... +
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~d-vA~wL~~~~~~~~~~~~~-~~R-PvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-ED-VATFLRVDPAKGLFYFDN-SFR-PVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HH-HHHHTTCCHHHHEEECCG-GGC-SSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HH-HHHHhCCCCCCCeEEECC-CCc-cCccEEEEeccCCcchhhhhHHHHHHH
Confidence 43 46789999999999873 23 34455321 1 1111111 111 1112222222222211 112 2
Q ss_pred HHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc--------------------------------------CCeeeecCc
Q 007085 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--------------------------------------YNCEPLHGD 376 (618)
Q Consensus 335 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~ 376 (618)
...+.+...++++||||++++.|+.+++.|.+. ..+..+|++
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHag 387 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 387 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSS
T ss_pred HHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCC
Confidence 223333345679999999999999888877431 236778999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----cCC------CCChhHHHHHhccCCCCC--CcceEE
Q 007085 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----YEL------PNTSETFVHRTGRTGRAG--KKGSAI 444 (618)
Q Consensus 377 ~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----~~~------p~~~~~~~Qr~GR~gR~g--~~g~~~ 444 (618)
|++++|..+++.|++|.++|||||++++.|||+|..++||. |++ |.++.+|.||+|||||.+ ..|.++
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~i 467 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 467 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEE
Confidence 99999999999999999999999999999999999999985 443 458999999999999976 578999
Q ss_pred EEechhhHHHHHHH
Q 007085 445 LIYTDQQARQVKSI 458 (618)
Q Consensus 445 ~~~~~~~~~~~~~l 458 (618)
+++.+.+...+..+
T Consensus 468 i~~~~~~~~~~~~l 481 (1724)
T 4f92_B 468 LITSHGELQYYLSL 481 (1724)
T ss_dssp EEEESTTCCHHHHH
T ss_pred EEecchhHHHHHHH
Confidence 99888776554443
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3e-39 Score=341.09 Aligned_cols=287 Identities=17% Similarity=0.184 Sum_probs=192.3
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCch
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~ 211 (618)
++++++++|+++|||||||++|++|++..+.. .++++||++||++||.|+++.+..+ .+.........
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~~~~~~~~ 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFSA 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC----CeEEeccccee
Confidence 46788999999999999999999999987754 2568999999999999999998754 22211111000
Q ss_pred HHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHH
Q 007085 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (618)
Q Consensus 212 ~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~ 290 (618)
......-+-+.+...+...+. ....+.++++|||||+|++ +..+...+..+...+ +.++|+++||||+++.+
T Consensus 72 -----v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 72 -----HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTS 144 (440)
T ss_dssp -----CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred -----ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchh
Confidence 000011122233333333222 2345789999999999997 332322223332222 36799999999998754
Q ss_pred HHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCC
Q 007085 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYN 369 (618)
Q Consensus 291 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~ 369 (618)
..+.. ....+ ...........+...+..+.+ .+.++||||++++.++.+++.|.+ .++
T Consensus 145 ~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~ 203 (440)
T 1yks_A 145 DEFPH----SNGEI--------------EDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSIRAANVMAASLRKAGKS 203 (440)
T ss_dssp CSSCC----CSSCE--------------EEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred hhhhh----cCCCe--------------eEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 32211 11001 001111111122222233322 367999999999999999999976 488
Q ss_pred eeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE-------------------cCCCCChhHHHHH
Q 007085 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH-------------------YELPNTSETFVHR 430 (618)
Q Consensus 370 ~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~-------------------~~~p~~~~~~~Qr 430 (618)
+..+|+ ++|+++++.|++|+++|||||+++++|||+| +++||+ ++.|.++++|+||
T Consensus 204 v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr 278 (440)
T 1yks_A 204 VVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQR 278 (440)
T ss_dssp EEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHH
T ss_pred EEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHh
Confidence 999999 4688999999999999999999999999999 999986 8889999999999
Q ss_pred hccCCCC-CCcceEEEEe---chhhHHHHHHHHHHhc
Q 007085 431 TGRTGRA-GKKGSAILIY---TDQQARQVKSIERDVG 463 (618)
Q Consensus 431 ~GR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~ 463 (618)
+||+||. +++|.|++++ ++.+...+..++..+.
T Consensus 279 ~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~ 315 (440)
T 1yks_A 279 RGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASML 315 (440)
T ss_dssp HTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHH
T ss_pred ccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhc
Confidence 9999997 7899999996 5666666666766553
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.5e-37 Score=329.60 Aligned_cols=286 Identities=18% Similarity=0.186 Sum_probs=210.1
Q ss_pred CCCCChHHHHHHHHHHhCCCCE-EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 118 GISKLFPIQKAVLEPAMQGRDM-IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~-li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
|+.+++|+|+ +++.+++++++ |+++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 4567889985 79999998876 999999999999999999887654 2578999999999999999988532
Q ss_pred CCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHH-HCCC
Q 007085 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-RLPQ 275 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~-~l~~ 275 (618)
.+. +....... .......|.++|++.|.+.+... ..+.++++|||||||++ +..+...+..+.. ..++
T Consensus 72 ----~v~--~~~~~~~~---~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 72 ----PIR--YQTPAVKS---DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp ----CEE--ECCTTCSC---CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred ----eee--eeeccccc---cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 221 11111000 11234679999999998777654 45889999999999976 3322232222322 2346
Q ss_pred CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchh
Q 007085 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (618)
Q Consensus 276 ~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~ 355 (618)
++|+|+||||+++.+..+ +..++..+....... ......+...+.+ ..+++||||++++
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p----------------~~~~~~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP----------------ERSWNTGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC----------------SSCCSSSCHHHHH--CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCccCC----------------chhhHHHHHHHHh--CCCCEEEEcCCHH
Confidence 899999999998743321 222333332211000 0000011122222 3569999999999
Q ss_pred HHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcC---------------
Q 007085 356 DADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE--------------- 419 (618)
Q Consensus 356 ~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~--------------- 419 (618)
.++.+++.|.+. +.+..+|+++. +++++.|++|+.+|||||+++++|||+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999764 88999998754 57899999999999999999999999999 9999998
Q ss_pred -----CCCChhHHHHHhccCCCCCC-cceEEEEech
Q 007085 420 -----LPNTSETFVHRTGRTGRAGK-KGSAILIYTD 449 (618)
Q Consensus 420 -----~p~~~~~~~Qr~GR~gR~g~-~g~~~~~~~~ 449 (618)
.|.+.++|+||+||+||.++ ++.|++++..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8889888743
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.2e-36 Score=340.47 Aligned_cols=334 Identities=18% Similarity=0.227 Sum_probs=242.5
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC-CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
..+|+++++++.+.+.++..+ ..|++.|+++|+.++. +++++|++|||||||+ ++|++..... .. ...+.++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~~--~~~g~~i 143 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--MP--HLENTQV 143 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--CG--GGGTCEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--cc--cCCCceE
Confidence 346889999999999998887 5688899998887775 4679999999999998 4555522111 11 1125679
Q ss_pred EEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
+|++|+++|+.|+++.+.+.+. ..+...++..... ........+|+|+|++++.+.+.... .+.++++|||||+|.
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~--~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRF--ENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETT--EEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGG
T ss_pred EecCchHHHHHHHHHHHHHHhC-Cchhheecceecc--ccccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEecCccc
Confidence 9999999999999998876542 1111111100000 00112457999999999998777653 488999999999995
Q ss_pred -ccCCCc-HHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcch-HH
Q 007085 257 -MLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SI 333 (618)
Q Consensus 257 -~~~~~~-~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 333 (618)
.++..+ ...+..++. ..++.++|+||||++.. .+..++.+...+.+.... ..+.+++......... ..
T Consensus 220 R~ld~d~~~~~l~~l~~-~~~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~~ 290 (773)
T 2xau_A 220 RTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDSA 290 (773)
T ss_dssp CCHHHHHHHHHHHHHHH-HCTTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHHH
T ss_pred cccchHHHHHHHHHHHH-hCCCceEEEEeccccHH---HHHHHhcCCCcccccCcc-----cceEEEEecCCchhHHHHH
Confidence 544322 223333333 34688999999999752 344566655555432221 1233333333333322 22
Q ss_pred HHHHHHHh--hcCCcEEEEecchhHHHHHHHHHHh------------cCCeeeecCcCCHHHHHHHHHHHh-----cCCc
Q 007085 334 IGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK------------SYNCEPLHGDISQSQRERTLSAFR-----DGRF 394 (618)
Q Consensus 334 l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~lhg~~~~~~r~~i~~~f~-----~g~~ 394 (618)
+..+++.+ ...+++||||+++++++.+++.|.+ .+.+..+|++|++++|.++++.|+ +|+.
T Consensus 291 l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~ 370 (773)
T 2xau_A 291 IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370 (773)
T ss_dssp HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce
Confidence 33333322 2467999999999999999999863 466889999999999999999999 9999
Q ss_pred cEEEEcCccccCCCCCCccEEEEcCC------------------CCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 395 NILIATDVAARGLDVPNVDLIIHYEL------------------PNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 395 ~vLVaT~~~~~GlDi~~~~~VI~~~~------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
+|||||+++++|||+|++++||+++. |.+.++|+||+||+||. .+|.|++++++.+.
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999887 88999999999999999 89999999987765
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.1e-37 Score=342.12 Aligned_cols=297 Identities=17% Similarity=0.200 Sum_probs=210.7
Q ss_pred CChHHHH-----HHHHHHh------CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 121 KLFPIQK-----AVLEPAM------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 121 ~l~~~Q~-----~~i~~i~------~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
.|+++|+ ++|+.++ +++++|+++|||||||++|++|++..+.. .+.++|||+||++||.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 7899999 9999888 88999999999999999999999988654 257899999999999999
Q ss_pred HHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHH
Q 007085 190 EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
++.+..+. + .. ...... .......-+-+.+...+.+.+... ..+.++++|||||||++ +..+...+..+
T Consensus 287 ~~~l~~~~--i--~~--~~~~l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l 355 (673)
T 2wv9_A 287 AEALRGLP--V--RY--LTPAVQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYI 355 (673)
T ss_dssp HHHTTTSC--C--EE--CCC------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHH
T ss_pred HHHHhcCC--e--ee--eccccc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHH
Confidence 99987642 1 11 000000 011122345556666666555543 56889999999999997 22122333333
Q ss_pred HHHC-CCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEE
Q 007085 270 LERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (618)
Q Consensus 270 l~~l-~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 348 (618)
...+ +..+|+|+||||+++.+..+... ......+. ...........+..+.+ ...++|
T Consensus 356 ~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~---------------~~~~~~~~~~~l~~l~~---~~~~~l 414 (673)
T 2wv9_A 356 ATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVS---------------SEIPDRAWSSGFEWITD---YAGKTV 414 (673)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEE---------------CCCCSSCCSSCCHHHHS---CCSCEE
T ss_pred HHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEe---------------eecCHHHHHHHHHHHHh---CCCCEE
Confidence 3333 26799999999998753321110 11111110 00111111222222222 467999
Q ss_pred EEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----------
Q 007085 349 VFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH---------- 417 (618)
Q Consensus 349 Vf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~---------- 417 (618)
|||+++++++.+++.|.+. +.+..+|+. +|+++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 9999999999999999764 889999994 788999999999999999999999999999 999998
Q ss_pred ----------cCCCCChhHHHHHhccCCCC-CCcceEEEEe---chhhHHHHHHHHHHh
Q 007085 418 ----------YELPNTSETFVHRTGRTGRA-GKKGSAILIY---TDQQARQVKSIERDV 462 (618)
Q Consensus 418 ----------~~~p~~~~~~~Qr~GR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l 462 (618)
++.|.+.++|+||+||+||. +++|.|++|+ ++.+...+..++..+
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 56889999999999999998 7899999996 455555555554433
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.5e-37 Score=335.57 Aligned_cols=278 Identities=19% Similarity=0.248 Sum_probs=210.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..++++|+++++.+..++++++++|||||||++|++++++. +.++||++||++||.|+++.+.+.+.
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g- 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHG- 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhC-
Confidence 34667777777788888999999999999999998887652 55899999999999999998877653
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCc-
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ- 278 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~- 278 (618)
..+...+++.. +...++|+|+||++| +....+.+.++++|||||||.+ +.++...+..+++.++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCc
Confidence 34445555433 356689999999998 3556677889999999999754 55577788889999987766
Q ss_pred -EEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHH
Q 007085 279 -SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDA 357 (618)
Q Consensus 279 -~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~ 357 (618)
+++||||+++.+. ...+....+..... ..+... ..+.. + ...+.+++||||++++++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~~----~~i~~~------~~~~~-----l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSNT----GEIPFY------GKAIP-----I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBSC----SSEEET------TEEEC-----G-GGSSSSEEEEECSCHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeeccc----chhHHH------Hhhhh-----h-hhccCCcEEEEeCCHHHH
Confidence 7788999987321 11222211110000 011100 00000 0 112567999999999999
Q ss_pred HHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEE----------EcC-------
Q 007085 358 DRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLII----------HYE------- 419 (618)
Q Consensus 358 ~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI----------~~~------- 419 (618)
+.+++.|.+. +++..+|++|++++ |+++..+|||||+++++|||++ +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999764 89999999999875 4566679999999999999996 99988 677
Q ss_pred ----CCCChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 420 ----LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 420 ----~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
.|.+.++|+||+||+|| +++|. ++|+++.+..
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 89999 8888876543
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1e-35 Score=327.95 Aligned_cols=315 Identities=18% Similarity=0.190 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHHhC----C-CCEEEEccCCChhHHHHHHHHHHHHHHHh-hhcCCCCCCeEEEEcCcHHHHHHHH-HHH
Q 007085 121 KLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFN-EKHGRGRNPLCLVLAPTRELAKQVE-KEF 193 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~-~~~~~~~~~~~lil~Pt~~La~q~~-~~l 193 (618)
.|+|+|.++++.++. + ++++++++||+|||++++..+. .+.+.. .........++|||||+++|+.||+ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 3 5689999999999998755444 443311 0001114678999999999999999 777
Q ss_pred HHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHH----hcCCCCCCcceEEEccchhccCCCcHHHHHHH
Q 007085 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~----~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
+.+.. .+..+.+. ......+|+|+||++|..... ...+...++++|||||||++.... ...+..+
T Consensus 257 ~~~~~--~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~i 325 (590)
T 3h1t_A 257 TPFGD--ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREI 325 (590)
T ss_dssp TTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHH
T ss_pred Hhcch--hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHH
Confidence 66543 22222211 234568999999999987654 233556789999999999986542 3566778
Q ss_pred HHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccC-CcccccCCeEEEEEecc----------------------
Q 007085 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATS---------------------- 326 (618)
Q Consensus 270 l~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~-~~~~~~~~~~~~~~~~~---------------------- 326 (618)
+..++ ..++|+|||||..........++..+........ .................
T Consensus 326 l~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 326 LEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 88875 5789999999985433333333333222110000 00000000000000000
Q ss_pred ----CC---------cchHH----HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcC---------CeeeecCcCCHH
Q 007085 327 ----MY---------EKPSI----IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY---------NCEPLHGDISQS 380 (618)
Q Consensus 327 ----~~---------~~~~~----l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------~~~~lhg~~~~~ 380 (618)
.. .+... +...+....+..++||||++++.++.+++.|.+.. .+..+||.++.
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~- 483 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK- 483 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-
Confidence 00 01111 22233444456799999999999999999996532 26778998764
Q ss_pred HHHHHHHHHhcCCcc---EEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCC---cceEEEEech
Q 007085 381 QRERTLSAFRDGRFN---ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK---KGSAILIYTD 449 (618)
Q Consensus 381 ~r~~i~~~f~~g~~~---vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~---~g~~~~~~~~ 449 (618)
+|+++++.|++++.+ |||+|+++++|||+|++++||++++|+++..|+|++||++|.+. +..++++...
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 799999999998765 88999999999999999999999999999999999999999764 4455555544
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.7e-35 Score=340.02 Aligned_cols=333 Identities=15% Similarity=0.169 Sum_probs=226.6
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|+|||.+++..++.. .++|++++||+|||++++..+...+.. +...++|||||+ +|+.||.+++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 56999999999998864 479999999999999997777666543 224579999999 99999999998877
Q ss_pred CCCceEEEEcCCchHHHHH--HhhcCCCEEEEChHHHHHHHHh-cCCCCCCcceEEEccchhccCCCcH-HHHHHHHHHC
Q 007085 198 PSLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFA-EDVEVILERL 273 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vViDEaH~~~~~~~~-~~~~~il~~l 273 (618)
.+.+.++.+......... ......+|+|+|++.|...... ..+...+|++|||||||++.+.... .....++..+
T Consensus 224 -~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 224 -NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp -CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred -CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 455555443322111111 1112479999999988642111 1123557999999999999765422 1112223332
Q ss_pred -CCCCcEEEEEeeCch----HHHHHHHH----------------------------hcCC--------------------
Q 007085 274 -PQNRQSMMFSATMPP----WIRSLTNK----------------------------YLKN-------------------- 300 (618)
Q Consensus 274 -~~~~~~l~lSAT~~~----~~~~~~~~----------------------------~l~~-------------------- 300 (618)
....++++|||||.. ++..++.. ++..
T Consensus 303 ~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 303 AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhh
Confidence 345679999999842 11111100 0000
Q ss_pred --------------------------------CcEEEeccCCcccc-cCCeEEEEE------------------------
Q 007085 301 --------------------------------PLTVDLVGDSDQKL-ADGISLYSI------------------------ 323 (618)
Q Consensus 301 --------------------------------~~~i~~~~~~~~~~-~~~~~~~~~------------------------ 323 (618)
...+.......... ......+.+
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 00000000000000 000000000
Q ss_pred ---------------------eccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh--cCCeeeecCcCCHH
Q 007085 324 ---------------------ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQS 380 (618)
Q Consensus 324 ---------------------~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~ 380 (618)
......|...+..++.. .++.++||||++++.++.+++.|.+ .+++..+||+|++.
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 11223356667777766 3678999999999999999999984 68999999999999
Q ss_pred HHHHHHHHHhcCC--ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHH
Q 007085 381 QRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSI 458 (618)
Q Consensus 381 ~r~~i~~~f~~g~--~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 458 (618)
+|+++++.|++++ ++|||||+++++|||+|++++||++|+|+++..|+|++||++|.|+.+.|+++....+....+.|
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999999877777554433333334
Q ss_pred HHHh
Q 007085 459 ERDV 462 (618)
Q Consensus 459 ~~~l 462 (618)
.+.+
T Consensus 622 ~~~~ 625 (968)
T 3dmq_A 622 VRWY 625 (968)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 51
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=9.9e-35 Score=314.01 Aligned_cols=327 Identities=18% Similarity=0.210 Sum_probs=223.2
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|+|||.++++++. .+.++|+.++||+|||++++..+.. +.. .....++|||||+ +|+.||.+++.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~------~~~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKK------ENELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHH------TTCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHh------cCCCCCEEEEccH-HHHHHHHHHHHH
Confidence 459999999998873 5678999999999999987554443 332 1224579999995 689999999999
Q ss_pred hCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCC
Q 007085 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
+++...+.++++.... .....++|+|+|++.+.+... +...++++||+||||++.+.. ......+..++
T Consensus 108 ~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~- 176 (500)
T 1z63_A 108 FAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK- 176 (500)
T ss_dssp HCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-
T ss_pred HCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-
Confidence 9988877766554421 122457999999999975443 234578999999999997753 34455566664
Q ss_pred CCcEEEEEeeCchH-HHHHH------------------------------------HHhcCCCcEEEeccCCc---cccc
Q 007085 276 NRQSMMFSATMPPW-IRSLT------------------------------------NKYLKNPLTVDLVGDSD---QKLA 315 (618)
Q Consensus 276 ~~~~l~lSAT~~~~-~~~~~------------------------------------~~~l~~~~~i~~~~~~~---~~~~ 315 (618)
..+++++||||... ..++. ..++ .+..+....... ..+.
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 46789999999432 11111 1111 222221111000 0001
Q ss_pred CCeEEEEEec---------------------------------------------------------cCCcchHHHHHHH
Q 007085 316 DGISLYSIAT---------------------------------------------------------SMYEKPSIIGQLI 338 (618)
Q Consensus 316 ~~~~~~~~~~---------------------------------------------------------~~~~~~~~l~~~l 338 (618)
.... ..+.+ ....|...+.+++
T Consensus 256 ~~~~-~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 256 DKIE-TNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp SEEE-EEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCeE-EEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 1111 11111 1122334444555
Q ss_pred HHh-hcCCcEEEEecchhHHHHHHHHHHh--cCCeeeecCcCCHHHHHHHHHHHhcC-Ccc-EEEEcCccccCCCCCCcc
Q 007085 339 TEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIATDVAARGLDVPNVD 413 (618)
Q Consensus 339 ~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~-vLVaT~~~~~GlDi~~~~ 413 (618)
.+. .++.++||||+++..++.+++.|.+ .+.+..+||.++..+|+++++.|+++ ..+ +||+|+++++|+|++.++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 544 3578999999999999999999975 58899999999999999999999998 454 799999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcc
Q 007085 414 LIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 414 ~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
+||++|+||++..|.|++||++|.|++..+.++..-.+....+.+.+.+..+..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~ 468 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRS 468 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSS
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988776554432222233445555544433
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7e-35 Score=307.10 Aligned_cols=268 Identities=16% Similarity=0.181 Sum_probs=189.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (618)
++++|+++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+. .+.+....+...
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~----- 64 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQ----- 64 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCcc-----
Confidence 6789999999999999999999966644 25689999999999999998875 344443333211
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCCcEEEEEeeCchHHHHHH
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~~l~lSAT~~~~~~~~~ 294 (618)
........+.+.|.+.+.+.+.. ...+.++++|||||+|++ +..+......+.... ++++++|+||||+++.+..+.
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 65 SERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred ccCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 11122456777899988776666 456899999999999997 322333333343332 568999999999997422111
Q ss_pred HHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeee
Q 007085 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 295 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
.. .+..+... ...... +...+..++.+ ..+++||||+++++++.+++.|.+ .+.+..+
T Consensus 143 ~~---~~~i~~~~---------------~~~~~~-~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~l 201 (431)
T 2v6i_A 143 PS---NSPIIDEE---------------TRIPDK-AWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYL 201 (431)
T ss_dssp CC---SSCCEEEE---------------CCCCSS-CCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CC---CCceeecc---------------ccCCHH-HHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 00 11111100 000111 11112223333 356899999999999999999976 4889999
Q ss_pred cCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccE-----------------EEEcCCCCChhHHHHHhccCCC
Q 007085 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL-----------------IIHYELPNTSETFVHRTGRTGR 436 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~-----------------VI~~~~p~~~~~~~Qr~GR~gR 436 (618)
|++ +|+++++.|++|+.+|||||+++++|||+| +.+ ||+++.|.++.+|+||+||+||
T Consensus 202 hg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR 276 (431)
T 2v6i_A 202 NRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276 (431)
T ss_dssp STT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred CCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCC
Confidence 987 577899999999999999999999999999 544 6788999999999999999999
Q ss_pred CCCcceEEEEec
Q 007085 437 AGKKGSAILIYT 448 (618)
Q Consensus 437 ~g~~g~~~~~~~ 448 (618)
.++...|++++.
T Consensus 277 ~g~~~~~~~~~~ 288 (431)
T 2v6i_A 277 NPEKLGDIYAYS 288 (431)
T ss_dssp CTTCCCCEEEEC
T ss_pred CCCCCCeEEEEc
Confidence 986554444443
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.9e-35 Score=312.61 Aligned_cols=280 Identities=18% Similarity=0.189 Sum_probs=192.9
Q ss_pred HHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE
Q 007085 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205 (618)
Q Consensus 126 Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~ 205 (618)
|......+.+++++|+++|||||||++|++|++..+.. .++++||++||++|+.|+++.+... .+...
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~----~v~~~ 78 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL----PVRYQ 78 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS----CEEEC
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc----eEeEE
Confidence 33444556778899999999999999999999988764 2578999999999999999998632 22211
Q ss_pred EcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHH-CCCCCcEEEEEe
Q 007085 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-LPQNRQSMMFSA 284 (618)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~-l~~~~~~l~lSA 284 (618)
..... ........+.++|.+.+...+... ..+.++++|||||||++.. .+...+..+... ..++.|+|+|||
T Consensus 79 ~~~~~-----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~-~~~~~~~~~~~~~~~~~~~~il~SA 151 (459)
T 2z83_A 79 TSAVQ-----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDP-ASIAARGYIATKVELGEAAAIFMTA 151 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSH-HHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred ecccc-----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCc-hhhHHHHHHHHHhccCCccEEEEEc
Confidence 11000 001233467788988887766554 4588999999999998410 001111111111 236899999999
Q ss_pred eCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHH
Q 007085 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (618)
Q Consensus 285 T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 364 (618)
|+++.+..+... ..|... +. . ..... +...+..++.. ..+++||||++++.++.+++.|
T Consensus 152 T~~~~~~~~~~~--~~pi~~-~~-~--------------~~~~~-~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHD-LQ-D--------------EIPDR-AWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEE-EE-C--------------CCCSS-CCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEE-ec-c--------------cCCcc-hhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHH
Confidence 998753221110 111111 10 0 00001 11111122332 3579999999999999999999
Q ss_pred Hh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE--------------------cCCCCC
Q 007085 365 AK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH--------------------YELPNT 423 (618)
Q Consensus 365 ~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~--------------------~~~p~~ 423 (618)
.+ .+.+..+|++ +|+++++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 76 4889999985 6778999999999999999999999999999 99999 779999
Q ss_pred hhHHHHHhccCCCCCC-cceEEEEechh
Q 007085 424 SETFVHRTGRTGRAGK-KGSAILIYTDQ 450 (618)
Q Consensus 424 ~~~~~Qr~GR~gR~g~-~g~~~~~~~~~ 450 (618)
..+|+||+||+||.++ +|.|++++.+.
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999987 99999999875
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.2e-33 Score=273.14 Aligned_cols=214 Identities=36% Similarity=0.646 Sum_probs=192.1
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007085 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~ 172 (618)
..+.+..+|+++++++.+++.|.+.++..|+++|.++++.+++++++++++|||+|||++|++|++..+..... .....
T Consensus 23 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~ 101 (242)
T 3fe2_A 23 NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGD 101 (242)
T ss_dssp CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTC
T ss_pred CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCC
Confidence 34567788999999999999999999999999999999999999999999999999999999999988764221 12234
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
++++||++||++|+.|+++.++++.. .+.+..++++.....+...+...++|+|+||++|.+.+......+.++++||
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 67899999999999999999988653 5678888899988888888888899999999999999988888899999999
Q ss_pred EccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEec
Q 007085 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~ 307 (618)
|||||++.+++|...+..++..+++++|+++||||+++.+..++..++.+|..+.+.
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999888763
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=272.43 Aligned_cols=213 Identities=36% Similarity=0.546 Sum_probs=181.1
Q ss_pred CCCCCCCCccC-CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCC
Q 007085 93 SSKDEGLDISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (618)
Q Consensus 93 ~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~ 171 (618)
..+.+...|++ +++++++++.|.+.++.+|+++|.++++.+++++++++++|||+|||++|++|++..+..........
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~ 92 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQR 92 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------
T ss_pred cCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhcc
Confidence 34456667888 79999999999999999999999999999999999999999999999999999998875433222233
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhC-CCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
.++++||++||++|+.|++++++++. ..+.+..++++.....+...+..+++|+|+||++|.+.+....+.+.++++||
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 57889999999999999999999975 45777888888887777777788899999999999999988888899999999
Q ss_pred EccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEE
Q 007085 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (618)
Q Consensus 251 iDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~ 305 (618)
|||||++.+++|...+..++..+++++|+++||||+++.++.++..++.+|..+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999887764
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=260.21 Aligned_cols=200 Identities=35% Similarity=0.578 Sum_probs=180.5
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
.+|+++++++++++.|.+.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ...++++||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999887532 123568999
Q ss_pred EcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
++|+++|+.|+++.+.++.. ...+..++++.........+...++|+|+||++|.+.+......+.++++||+||||
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 99999999999999998764 466777888888777777777789999999999999998887888999999999999
Q ss_pred hccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEE
Q 007085 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i 304 (618)
++.+.++...+..++..++++.|+++||||+++.+..++..++.+|..+
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999889999999999999899999999999999999999999888765
No 57
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-32 Score=261.74 Aligned_cols=204 Identities=48% Similarity=0.835 Sum_probs=184.7
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+|+++++++++++.|++.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+... .....++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~---~~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS---QERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---CCTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhc---cccCCCCcEEEE
Confidence 58899999999999999999999999999999999999999999999999999999998876431 112346789999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
+|+++|+.|+++++.++++.+.+..++++.....+...+...++|+|+||+++.+.+....+.+.++++||+||||++.+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999999999888888888888887777777777899999999999999988888899999999999999999
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 260 ~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
+++...+..++..++++.|+++||||+++.+..+...++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 88999999999999999999999999999999999999999987754
No 58
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=311.83 Aligned_cols=316 Identities=18% Similarity=0.242 Sum_probs=224.8
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
..|+|||.++++++. .+.++|++++||+|||++++..+...+... .....+||||| .+|+.||.+++.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHH
Confidence 369999999999776 678999999999999998866655443331 12446899999 5889999999999
Q ss_pred hCCCCceEEEEcCCchHHHHHHh------------hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcH
Q 007085 196 SAPSLDTICVYGGTPISHQMRAL------------DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
+++.+.+.+.++........... ...++|+|+|++.+...... +....|++|||||||++.+. .
T Consensus 308 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~ 383 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--E 383 (800)
T ss_dssp HSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--S
T ss_pred HCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--h
Confidence 99988888877766554443322 23478999999999765432 22347899999999999764 3
Q ss_pred HHHHHHHHHCCCCCcEEEEEeeCch----HHHHHHHHhcC-----------------------------CCcEEEeccCC
Q 007085 264 EDVEVILERLPQNRQSMMFSATMPP----WIRSLTNKYLK-----------------------------NPLTVDLVGDS 310 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~----~~~~~~~~~l~-----------------------------~~~~i~~~~~~ 310 (618)
..+...+..++ ....++|||||.. ++..++..... .+..+......
T Consensus 384 s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 34455555553 4567899999831 22222221111 11111110000
Q ss_pred cccccCCeEEEEEec-----------------------------------------------------------------
Q 007085 311 DQKLADGISLYSIAT----------------------------------------------------------------- 325 (618)
Q Consensus 311 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 325 (618)
............+.+
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000000000000000
Q ss_pred ----------cCCcchHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCC
Q 007085 326 ----------SMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 326 ----------~~~~~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
....|...+..++..+. .+.++||||+....++.|.+.|.. .+.+..+||.++..+|+++++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 01234555666666553 467999999999999999999964 589999999999999999999999855
Q ss_pred c---cEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 394 F---NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 394 ~---~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
. .+|++|.++++|||++.+++||+||+|||+..+.|++||++|.|++..|.++.
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEE
Confidence 4 58999999999999999999999999999999999999999999877665543
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=265.22 Aligned_cols=204 Identities=35% Similarity=0.587 Sum_probs=183.1
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
+..+|+++++++.+++.|++.++..|+++|.++++.+++++++++++|||+|||++|++|++..+... ....++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~ 114 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFA 114 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceE
Confidence 34568999999999999999999999999999999999999999999999999999999999887651 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCcceEEEcc
Q 007085 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDE 253 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vViDE 253 (618)
||++||++|+.|++++++++.. .+.+.+++++.....+...+...++|+|+||++|.+.+.. ..+.+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999988754 4677888888887777777778899999999999998876 456788999999999
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||++.+++|...+..++..+++++|+++||||+++.+.+++..++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999987754
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6e-33 Score=265.87 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=179.3
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
.+|+++++++.+++.|++.++..|+++|.++++.+++++++++++|||+|||++|++|++..+.. ...+.++||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 77 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVI 77 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEE
Confidence 46889999999999999999999999999999999999999999999999999999999987643 123578999
Q ss_pred EcCcHHHHHHHHHHHHHhCC------CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 179 LAPTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
++||++|+.|++++++++.. .+.+..++++.......+.+...++|+|+||++|.+.+....+.+.++++||+|
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988764 356667777776655555555678999999999999998877788899999999
Q ss_pred cchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|||++.++++...+..++..+++++|+++||||+++.+.+++..++.+|..+.+
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999999999999999999999999999999988765
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.2e-32 Score=263.86 Aligned_cols=207 Identities=32% Similarity=0.519 Sum_probs=179.3
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 007085 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (618)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~ 172 (618)
..+.+..+|+++++++.+++.|++.++..|+++|.++++.+++++++++++|||+|||++|++|++..+.. ...
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~ 91 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENL 91 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSC
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCC
Confidence 34455567999999999999999999999999999999999999999999999999999999999887643 123
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (618)
+.++||++||++|+.|++++++++.. .+.+.+++++.....+...+ ..++|+|+||++|.+.+....+.+.++++|
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 57899999999999999999998763 56777888887776665555 468999999999999998877788899999
Q ss_pred EEccchhccCCC-cHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 250 VLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 250 ViDEaH~~~~~~-~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|+||||++.+++ |...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999999887 999999999999999999999999999999999999988877643
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.2e-32 Score=299.21 Aligned_cols=282 Identities=18% Similarity=0.195 Sum_probs=205.3
Q ss_pred HHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCc
Q 007085 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210 (618)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~ 210 (618)
...++++++++++|||||||+. ++..+.. ....+|++||++||.|+++++.+. .+.+..++++..
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~ 214 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEER 214 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCE
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCee
Confidence 3446778999999999999983 3333333 234699999999999999999886 466777777655
Q ss_pred hHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC-CCCcEEEEEeeCchH
Q 007085 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPW 289 (618)
Q Consensus 211 ~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~-~~~~~l~lSAT~~~~ 289 (618)
... .......+++++|++.+. ....+++|||||+|++.+.++...+..++..++ ...+++++|||.+ .
T Consensus 215 ~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~ 283 (677)
T 3rc3_A 215 VTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-L 283 (677)
T ss_dssp ECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-H
T ss_pred EEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-H
Confidence 310 000113689999975543 256789999999999999999999999999988 6789999999953 3
Q ss_pred HHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cC
Q 007085 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SY 368 (618)
Q Consensus 290 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~ 368 (618)
+..+.... .....+....... .. ........ .+... ....+|||+++++++.+++.|.+ .+
T Consensus 284 i~~l~~~~-~~~~~v~~~~r~~-----~l---~~~~~~l~-------~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 284 VMELMYTT-GEEVEVRDYKRLT-----PI---SVLDHALE-------SLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHH-TCCEEEEECCCSS-----CE---EECSSCCC-------SGGGC--CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CCceEEEEeeecc-----hH---HHHHHHHH-------HHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 44443332 3333332211100 00 01011000 01111 23568999999999999999976 48
Q ss_pred CeeeecCcCCHHHHHHHHHHHhc--CCccEEEEcCccccCCCCCCccEEEEcCC--------------CCChhHHHHHhc
Q 007085 369 NCEPLHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLIIHYEL--------------PNTSETFVHRTG 432 (618)
Q Consensus 369 ~~~~lhg~~~~~~r~~i~~~f~~--g~~~vLVaT~~~~~GlDi~~~~~VI~~~~--------------p~~~~~~~Qr~G 432 (618)
.+..+||+|++++|+++++.|++ |+++|||||+++++|||+ ++++||+++. |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 89999999999999999999999 889999999999999999 9999999999 779999999999
Q ss_pred cCCCCCCc---ceEEEEechhhHHHHHHH
Q 007085 433 RTGRAGKK---GSAILIYTDQQARQVKSI 458 (618)
Q Consensus 433 R~gR~g~~---g~~~~~~~~~~~~~~~~l 458 (618)
|+||.++. |.|++++.. +...++.+
T Consensus 425 RAGR~g~~g~~G~v~~l~~~-d~~~~~~~ 452 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMNHE-DLSLLKEI 452 (677)
T ss_dssp TBTCTTSSCSSEEEEESSTT-HHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEecc-hHHHHHHH
Confidence 99999864 666665543 43334333
No 63
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-31 Score=296.12 Aligned_cols=320 Identities=13% Similarity=0.167 Sum_probs=216.8
Q ss_pred CCChHHHHHHHHHHh---------CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~---------~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
..|+|||.+++.++. .+..+|+.++||+|||++++..+...+...... .....++|||||+ +|+.||.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~--~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC--KPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS--SCSCSCEEEEECH-HHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc--cCCCCcEEEEecH-HHHHHHH
Confidence 359999999999874 345699999999999998876666544321111 1123469999996 8999999
Q ss_pred HHHHHhCCC-CceEEEEcCCchHHHHH---Hhh-----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC
Q 007085 191 KEFHESAPS-LDTICVYGGTPISHQMR---ALD-----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (618)
Q Consensus 191 ~~l~~~~~~-~~~~~~~~~~~~~~~~~---~~~-----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~ 261 (618)
+++.++++. +.++.++++........ .+. ...+|+|+|++.+.... ..+....+++||+||||++.+..
T Consensus 131 ~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 999998764 55555555543222111 111 14789999999997643 33445678999999999997753
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeeCchHH----H---------------HHHHHhc------------------------
Q 007085 262 FAEDVEVILERLPQNRQSMMFSATMPPWI----R---------------SLTNKYL------------------------ 298 (618)
Q Consensus 262 ~~~~~~~il~~l~~~~~~l~lSAT~~~~~----~---------------~~~~~~l------------------------ 298 (618)
......+..++ ..++++|||||...- . .+...|.
T Consensus 209 --~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 33444444553 567899999984210 0 0000000
Q ss_pred -----CCCcEEEeccCCc-ccccCCeEEEE--------------------------------------------------
Q 007085 299 -----KNPLTVDLVGDSD-QKLADGISLYS-------------------------------------------------- 322 (618)
Q Consensus 299 -----~~~~~i~~~~~~~-~~~~~~~~~~~-------------------------------------------------- 322 (618)
..+..+....... ..+........
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0000000000000 00000000000
Q ss_pred ---------------------------EeccCCcchHHHHHHHHHhh--cCCcEEEEecchhHHHHHHHHHHh-cCCeee
Q 007085 323 ---------------------------IATSMYEKPSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (618)
Q Consensus 323 ---------------------------~~~~~~~~~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~ 372 (618)
.......|...+..++.... .+.++||||++...++.+.+.|.. .+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 00011234445555555442 478999999999999999999965 589999
Q ss_pred ecCcCCHHHHHHHHHHHhcCCc---cEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 373 LHGDISQSQRERTLSAFRDGRF---NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 373 lhg~~~~~~r~~i~~~f~~g~~---~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
+||.++..+|+++++.|+++.. .+||+|+++++|||++.+++||++|+||++..+.|++||++|.|++..|.++.
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 9999999999999999999865 48999999999999999999999999999999999999999999877655543
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.2e-32 Score=261.20 Aligned_cols=209 Identities=31% Similarity=0.538 Sum_probs=180.3
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
..+..+|+++++++.+++.|++.++..|+++|.++++.+++++++++++|||+|||++|++|++..+.+... ....++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 345567999999999999999999999999999999999999999999999999999999999988865221 112367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc-CCCCCCcceEEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~~~~vVi 251 (618)
++||++||++|+.|++++++++... +.+..++++.........+ ..++|+|+||++|.+.+... .+.+.++++||+
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 8999999999999999999998754 5677777777665555544 46899999999999888765 466789999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||||++.++++...+..++..+++.+|+++||||+++.+..+...++.+|..+.+
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999988764
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.4e-32 Score=264.79 Aligned_cols=206 Identities=33% Similarity=0.549 Sum_probs=172.5
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
+.+..+|+++++++.+++.|+..++..|+++|.++++.+++++++++++|||+|||++|++|++..+.. ...+.
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~ 99 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKET 99 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSC
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCc
Confidence 345567999999999999999999999999999999999999999999999999999999999987632 12356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
++||++||++|+.|+++.++++.. .+.+..++++.....+...+... ++|+|+||++|.+.+....+.+.++++||+
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 899999999999999999999875 35566667776655555555544 899999999999999888788899999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||||++.++++...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999988999999999999999999999999999999999999999887754
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1e-31 Score=258.41 Aligned_cols=204 Identities=33% Similarity=0.556 Sum_probs=173.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
.....|+++++++.+++.|+..++..|+++|.++++.+++++++++++|||+|||++|++|++..+.. ....++
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~ 84 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQ 84 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999987633 123578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
+||++|+++|+.|+++++.++.. .+.+..++++.........+.. ++|+|+||++|.+.+......+.++++||+||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 99999999999999999999865 4566667777665555544444 89999999999999988888889999999999
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||++.++++...+..++..+++..|+++||||+++.+..++..++.+|..+.+
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999987754
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=262.86 Aligned_cols=204 Identities=33% Similarity=0.536 Sum_probs=175.5
Q ss_pred CCCccCCC--CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 98 GLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 98 ~~~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
...|+++. +++++++.|+..++..|+++|.++++.++.++++++++|||+|||++|++|++..+.+.... ...+.+
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~ 128 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTG 128 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCC
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCce
Confidence 34566666 89999999999999999999999999999999999999999999999999999988753211 123678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC-CCCCCcceEEEc
Q 007085 176 CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLD 252 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~~~~vViD 252 (618)
+|||+||++|+.|+++.+++++.. ..+..++++.........+..+++|+|+||++|.+.+.... +.+.++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 999999999999999999998753 45677788888777777777789999999999998887653 678899999999
Q ss_pred cchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcE
Q 007085 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT 303 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~ 303 (618)
|||++.+++|...+..++..++..+|+++||||+++.+..+...++.++..
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 999999999999999999999999999999999999999999988876543
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=2.3e-31 Score=255.14 Aligned_cols=201 Identities=29% Similarity=0.512 Sum_probs=176.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~li 178 (618)
..|+++++++++++.|...++..|+++|.++++.+++++++++++|||+|||++|++|++..+.. .....++||
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~li 87 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 87 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999887532 122468999
Q ss_pred EcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 179 l~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
++||++|+.||+++++++.. .+.+..++++.....+...+.. .++|+|+||++|.+.+....+.+.++++||+|||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 99999999999999998763 5677778888777666665554 4799999999999999888888999999999999
Q ss_pred hhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEE
Q 007085 255 DQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (618)
Q Consensus 255 H~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~ 305 (618)
|++.+ .++...+..++..+++++|+++||||+++.+..++..++.+|..+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99987 3677888889999988999999999999999999999999987764
No 69
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=268.40 Aligned_cols=201 Identities=27% Similarity=0.447 Sum_probs=174.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
...+|+++++++.+++.|+..+|..|+++|.++|+.++.+ +++|+++|||||||++|++|++..+.. ....+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCc
Confidence 4567999999999999999999999999999999999997 899999999999999999999988643 23366
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHh-cCCCCCCcceEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~~~~vV 250 (618)
++|||+||++||.|+++.+.++.. .+.+.+.+++...... ....++|||+||++|++++.+ ..+.+.++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 899999999999999999988763 4666666666553322 145689999999999999865 456788999999
Q ss_pred EccchhccC-CCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 251 iDEaH~~~~-~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|||||++++ .+|...+..++..+++++|+++||||+++.+..++..++.+|..+.+
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999999987 67889999999999999999999999999999999999999988875
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.98 E-value=8.7e-32 Score=263.85 Aligned_cols=210 Identities=36% Similarity=0.603 Sum_probs=182.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhh---cCCCCC
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRN 173 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~---~~~~~~ 173 (618)
+..+|+++++++.+++.|...++..|+++|.++++.+++++++++++|||+|||++|++|++..+...... .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999888652211 011235
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
+++||++||++|+.|++++++++.. .+.+..++++.....+...+...++|+|+||++|.+.+....+.+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 6899999999999999999998764 35677788888877777777788999999999999999888888999999999
Q ss_pred ccchhccCCCcHHHHHHHHHHC--CC--CCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 252 DEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l--~~--~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||||++.+++|...+..++..+ +. ++|+++||||+++.+..++..++.+|..+.+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999999954 33 6899999999999999999999999888765
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=252.88 Aligned_cols=209 Identities=27% Similarity=0.436 Sum_probs=170.7
Q ss_pred CCCCCCCccCC----CCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC
Q 007085 94 SKDEGLDISKL----DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (618)
Q Consensus 94 ~~~~~~~~~~~----~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~ 169 (618)
.+.+..+|+++ ++++++++.|.+.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+.. .
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-----~ 94 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----P 94 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-----C
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----c
Confidence 44556677776 89999999999999999999999999999999999999999999999999999988743 1
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC--ceEEEEcCCchHHH-HHHhhcCCCEEEEChHHHHHHHHhc--CCCCC
Q 007085 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQ-MRALDYGVDAVVGTPGRVIDLIKRN--ALNLS 244 (618)
Q Consensus 170 ~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~Ilv~T~~~l~~~l~~~--~~~~~ 244 (618)
...++++||++||++|+.|+++++++++... .+..++++...... .......++|+|+||++|.+.+... .+.+.
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 95 ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 2236789999999999999999999987643 33333332221111 1122346899999999999998876 46788
Q ss_pred CcceEEEccchhccC---CCcHHHHHHHHHHCC-CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEec
Q 007085 245 EVQFVVLDEADQMLS---VGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (618)
Q Consensus 245 ~~~~vViDEaH~~~~---~~~~~~~~~il~~l~-~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~ 307 (618)
++++|||||||++.+ .+|...+..++..+. ++.|+++||||+++.+..++..++.+|..+.+.
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999987 468888888887764 578999999999999999999999999888763
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=7.8e-30 Score=290.38 Aligned_cols=303 Identities=16% Similarity=0.123 Sum_probs=201.8
Q ss_pred CChHHHHHHHHHHhC--------------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007085 121 KLFPIQKAVLEPAMQ--------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~--------------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+.. .....++|||||+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 599999999998875 367999999999999987 555544321 12246899999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh-cCCCEEEEChHHHHHHHHhcC--CCCCCcceEEEccchhccCCCcH
Q 007085 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 187 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~--~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
.||.+++.++.+.. +.+..+.......+. ...+|+|+|+++|...+.... ..+..+.+||+||||++.. .
T Consensus 344 ~Q~~~~f~~f~~~~----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---G 416 (1038)
T ss_dssp HHHHHHHHTTSTTC----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---H
T ss_pred HHHHHHHHHhcccc----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---h
Confidence 99999999876531 123334444444453 468999999999998876532 1345788999999999742 3
Q ss_pred HHHHHHHHHCCCCCcEEEEEeeCchHH--------HHHH-------------HHhcCCCcEEEeccCCcc-c---cc-C-
Q 007085 264 EDVEVILERLPQNRQSMMFSATMPPWI--------RSLT-------------NKYLKNPLTVDLVGDSDQ-K---LA-D- 316 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~~~--------~~~~-------------~~~l~~~~~i~~~~~~~~-~---~~-~- 316 (618)
..+..++..++ +.++++|||||.... ..+. ..-+..|..+........ . .. .
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~ 495 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDE 495 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCH
T ss_pred HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccH
Confidence 44566777775 579999999997432 1111 111111222211110000 0 00 0
Q ss_pred ----CeEEEEEeccCCcchHHHHHHHHHhh----------cCCcEEEEecchhHHHHHHHHHHhc-------------CC
Q 007085 317 ----GISLYSIATSMYEKPSIIGQLITEHA----------KGGKCIVFTQTKRDADRLAHAMAKS-------------YN 369 (618)
Q Consensus 317 ----~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~~lVf~~~~~~~~~l~~~L~~~-------------~~ 369 (618)
.+..............++..++.... .+.++||||++++.|..+++.|.+. ++
T Consensus 496 ~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 496 KKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 00000000000001122233333221 2458999999999999999988542 34
Q ss_pred ee-eecCc----------C----------CH-----------------------------HHHHHHHHHHhcCCccEEEE
Q 007085 370 CE-PLHGD----------I----------SQ-----------------------------SQRERTLSAFRDGRFNILIA 399 (618)
Q Consensus 370 ~~-~lhg~----------~----------~~-----------------------------~~r~~i~~~f~~g~~~vLVa 399 (618)
+. ++|+. + ++ .+|+.++++|++++++|||+
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIv 655 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIV 655 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEE
Confidence 54 44542 1 22 24788999999999999999
Q ss_pred cCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCC
Q 007085 400 TDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGK 439 (618)
Q Consensus 400 T~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~ 439 (618)
|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|...
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 9999999999999 67889999999999999999999864
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=4.3e-28 Score=257.29 Aligned_cols=313 Identities=20% Similarity=0.180 Sum_probs=222.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~- 198 (618)
..+++.|.-..-.+..++ |..+.||+|||+++.+|++-..+. +..+.||+|+..||.|-++++..++.
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 348889988887777765 999999999999999998755544 67799999999999999888877653
Q ss_pred -CCceEEEEcC--------------------------------------------------CchHHHHHHhhcCCCEEEE
Q 007085 199 -SLDTICVYGG--------------------------------------------------TPISHQMRALDYGVDAVVG 227 (618)
Q Consensus 199 -~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~Ilv~ 227 (618)
++.+.+++.. .+...+. ....|+|+++
T Consensus 143 Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err--~aY~~DItYg 220 (822)
T 3jux_A 143 LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRK--EAYLCDVTYG 220 (822)
T ss_dssp TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHH--HHHHSSEEEE
T ss_pred hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHH--HHhcCCCEEc
Confidence 5677777762 1111111 1234899999
Q ss_pred ChHHH-HHHHHhc------CCCCCCcceEEEccchhccCCC----------------cH---------------------
Q 007085 228 TPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSVG----------------FA--------------------- 263 (618)
Q Consensus 228 T~~~l-~~~l~~~------~~~~~~~~~vViDEaH~~~~~~----------------~~--------------------- 263 (618)
|...| +++|... ......+.++||||+|.++=.. ..
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99998 5666542 1224568899999999762100 00
Q ss_pred -----------HHHHHH---------------------HH---HCCC---------------------------------
Q 007085 264 -----------EDVEVI---------------------LE---RLPQ--------------------------------- 275 (618)
Q Consensus 264 -----------~~~~~i---------------------l~---~l~~--------------------------------- 275 (618)
..++.+ +. .+..
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 001110 00 0000
Q ss_pred ----------------------------CCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEE-EEEecc
Q 007085 276 ----------------------------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL-YSIATS 326 (618)
Q Consensus 276 ----------------------------~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 326 (618)
-.++.+||+|.......+...|- ...+.+ +.... ...+.. ..+..+
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~I-Ptnkp--~~R~d~~d~vy~t 455 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVI-PTHKP--MIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEEC-CCSSC--CCCEECCCEEESS
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEE-CCCCC--cceeecCcEEEec
Confidence 01467899999887766665553 223322 22211 111111 123345
Q ss_pred CCcchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccc
Q 007085 327 MYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 327 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
...|...+...+.+. ..+.++||||++++.++.+++.|.+ .+++.++|++..+.++..+...++.+ .|+|||++++
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 556666666666553 4678999999999999999999976 49999999996666666566666655 5999999999
Q ss_pred cCCCCC--------CccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 405 RGLDVP--------NVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 405 ~GlDi~--------~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
||+||+ ...+||+++.|.+...|+||+||+||.|.+|.+++|++..|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999998 556999999999999999999999999999999999988774
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=4.3e-26 Score=251.47 Aligned_cols=170 Identities=19% Similarity=0.304 Sum_probs=126.6
Q ss_pred CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecch
Q 007085 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK 354 (618)
Q Consensus 275 ~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~ 354 (618)
...|++++|||+++..... ....+........ .. .....+.........++..+......+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~------~~~~~~~~~r~~~-l~--~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH------SGRVVEQIIRPTG-LL--DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH------CSEEEEECSCTTC-CC--CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh------hhCeeeeeeccCC-CC--CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3578999999998753221 0111211111100 00 1111222222222333344444444678999999999
Q ss_pred hHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCC-----CCChhHHH
Q 007085 355 RDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL-----PNTSETFV 428 (618)
Q Consensus 355 ~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~-----p~~~~~~~ 428 (618)
+.++.+++.|.+. +++..+|+++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999764 88999999999999999999999999999999999999999999999999998 88999999
Q ss_pred HHhccCCCCCCcceEEEEechhhHHH
Q 007085 429 HRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 429 Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
||+||+||. .+|.|++++++.+...
T Consensus 530 Qr~GRagR~-~~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 530 QTIGRAARN-ARGEVWLYADRVSEAM 554 (664)
T ss_dssp HHHGGGTTS-TTCEEEEECSSCCHHH
T ss_pred HHHCccCcC-CCCEEEEEEcCCCHHH
Confidence 999999998 4899999998765443
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=2.9e-25 Score=244.81 Aligned_cols=170 Identities=19% Similarity=0.321 Sum_probs=127.3
Q ss_pred CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecch
Q 007085 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK 354 (618)
Q Consensus 275 ~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~ 354 (618)
...|++++|||+++..... .... +........ .. .....+.........++..+......+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~--~~~~~r~~~-l~--~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEM--VEQIIRPTG-LL--DPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSC--EEECCCTTC-CC--CCEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCe--eeeeecccC-CC--CCeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3678999999998754222 0111 111111100 00 1112222222223334444444444678999999999
Q ss_pred hHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCC-----CCChhHHH
Q 007085 355 RDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL-----PNTSETFV 428 (618)
Q Consensus 355 ~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~-----p~~~~~~~ 428 (618)
+.++.+++.|.+. +++..+|+++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999764 88999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHhccCCCCCCcceEEEEechhhHHH
Q 007085 429 HRTGRTGRAGKKGSAILIYTDQQARQ 454 (618)
Q Consensus 429 Qr~GR~gR~g~~g~~~~~~~~~~~~~ 454 (618)
||+||+||. .+|.|++++++.+...
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 999999998 7899999998765543
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=6.4e-24 Score=229.50 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=106.8
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.++ .|+++|..+++.+++++ |.++.||+|||++|.+|++...+. +.+++||+||++||.|+++++..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 577 79999999999999987 999999999999999999655432 567999999999999999999886
Q ss_pred CC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCC---CcceEEEccchhcc
Q 007085 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLS---EVQFVVLDEADQML 258 (618)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~---~~~~vViDEaH~~~ 258 (618)
+. ++.+.+++++.+...+ .....++|+|+||+.| ++++.... +.+. ++.++||||+|+++
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 54 5677888888774433 3345689999999999 78887652 4577 89999999999986
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=9.5e-25 Score=198.10 Aligned_cols=153 Identities=36% Similarity=0.668 Sum_probs=141.0
Q ss_pred CCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCc
Q 007085 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (618)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~ 394 (618)
..+.+.........|...+..++... +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|..+++.|++++.
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred ccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 45677777778888999999988875 567999999999999999999976 4899999999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccC
Q 007085 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469 (618)
Q Consensus 395 ~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 469 (618)
+|||||+++++|+|+|++++||++++|+++.+|+||+||++|.|+++.|++++.+.+...++.+++.++..++.+
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEEC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998776653
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=8.9e-25 Score=203.05 Aligned_cols=176 Identities=22% Similarity=0.352 Sum_probs=136.9
Q ss_pred HHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeee
Q 007085 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (618)
Q Consensus 295 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~l 373 (618)
..|+.+|..+.+... ......+.+.........|...+..++... ..++||||++++.++.+++.|.+ .+.+..+
T Consensus 9 ~~~~~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp ---------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 346667766654322 234456677777777778888888877653 45899999999999999999965 5899999
Q ss_pred cCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh-hH
Q 007085 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QA 452 (618)
Q Consensus 374 hg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~ 452 (618)
|++|++.+|.++++.|++++++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.|++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 67
Q ss_pred HHHHHHHHHhcCCcccCCcccc
Q 007085 453 RQVKSIERDVGCRFTQLPRIAV 474 (618)
Q Consensus 453 ~~~~~l~~~l~~~~~~~~~~~~ 474 (618)
..++.+++.+....+++|.++.
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~ 186 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQ 186 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHccCcCCHHHH
Confidence 7888888888777777776543
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=1.5e-24 Score=198.38 Aligned_cols=157 Identities=25% Similarity=0.481 Sum_probs=140.5
Q ss_pred CCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCc
Q 007085 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (618)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~ 394 (618)
..+.++++......|...+..+++.. +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|..+++.|++++.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 34666777777888999999988876 567999999999999999999976 4899999999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh-hHHHHHHHHHHhcCCcccCCccc
Q 007085 395 NILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 395 ~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||++|.|+++.|++++++. +...++.+++.+...+++++...
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 56788999999999888877653
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=203.52 Aligned_cols=160 Identities=34% Similarity=0.557 Sum_probs=131.7
Q ss_pred cCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCC
Q 007085 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
...+.+....+....|...+..+++...+..++||||++++.++.+++.|.. .+.+..+|++|++.+|.++++.|++++
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 4567777777888889999999998876678999999999999999999975 489999999999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 394 ~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
++|||||+++++|+|+|++++||++|+|+++.+|+||+||++|.|++|.|++++++.+...++.+.+.+....+++|.++
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 176 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 176 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887777777654
Q ss_pred c
Q 007085 474 V 474 (618)
Q Consensus 474 ~ 474 (618)
.
T Consensus 177 ~ 177 (185)
T 2jgn_A 177 E 177 (185)
T ss_dssp H
T ss_pred H
Confidence 3
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.8e-24 Score=196.65 Aligned_cols=155 Identities=32% Similarity=0.534 Sum_probs=135.6
Q ss_pred CCeEEEEEeccCCc-chHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCC
Q 007085 316 DGISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 316 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
..+.++++.++... |...+..+++.. +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|..+++.|++++
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45666666666544 888888887765 467999999999999999999976 488999999999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCccEEEEcCCC------CChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcc
Q 007085 394 FNILIATDVAARGLDVPNVDLIIHYELP------NTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 394 ~~vLVaT~~~~~GlDi~~~~~VI~~~~p------~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
++|||||+++++|+|+|++++||+|++| .+..+|+||+||++|.|++|.|++++.+.+...+..+++.++..++
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 164 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999 8999999999999999999999999999999999999999998877
Q ss_pred cCCc
Q 007085 468 QLPR 471 (618)
Q Consensus 468 ~~~~ 471 (618)
+++.
T Consensus 165 ~~~~ 168 (175)
T 2rb4_A 165 QLNA 168 (175)
T ss_dssp EECS
T ss_pred ccCC
Confidence 6654
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=2.8e-24 Score=195.45 Aligned_cols=154 Identities=30% Similarity=0.566 Sum_probs=134.7
Q ss_pred eEEEEEeccCCc-chHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCcc
Q 007085 318 ISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 318 ~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
+.++++...... |...+..+++.. +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|.++++.|++++.+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 445555555555 888898888876 567999999999999999999976 48899999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCcc
Q 007085 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRI 472 (618)
Q Consensus 396 vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 472 (618)
|||||+++++|+|+|++++||++++|+++.+|+||+||++|.|++|.|++++++.+...+..+++.++..+++++..
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877653
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=1.2e-23 Score=199.33 Aligned_cols=151 Identities=40% Similarity=0.776 Sum_probs=136.1
Q ss_pred EEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEE
Q 007085 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (618)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLV 398 (618)
...+......|...+..+++.. ...++||||++++.++.+++.|.+ .+.+..+||+|++.+|+++++.|++++.+|||
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 3445567778999999988865 467999999999999999999965 58999999999999999999999999999999
Q ss_pred EcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCc
Q 007085 399 ATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 399 aT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
||+++++|||+|++++||++++|+++..|+||+||+||.|++|.|++++++.+...++.+++.++..++.++.
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887766543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=4e-23 Score=204.76 Aligned_cols=152 Identities=39% Similarity=0.768 Sum_probs=135.1
Q ss_pred eEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccE
Q 007085 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~v 396 (618)
+.++.+.+....|...+..+++... ..++||||++++.++.+++.|.+ .+.+..+||+|++.+|+.+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566677788889999999988764 77999999999999999999965 589999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCC
Q 007085 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLP 470 (618)
Q Consensus 397 LVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 470 (618)
||||+++++|||+|++++||+++.|++...|+||+||+||.|++|.|++|+++.+...++.+++.++..+..++
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~ 155 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 155 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999998887766544
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=197.79 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=118.5
Q ss_pred cCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHH-HHHHHHH
Q 007085 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-VEKEFHE 195 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q-~~~~l~~ 195 (618)
.....|+++|.++++.+++++++++.+|||+|||++++++++..+...... ....++||+||+++|+.| |.+.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999988776553221 235689999999999999 7788887
Q ss_pred hCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcC------CCCCCcceEEEccchhccCCCcHHHHH-
Q 007085 196 SAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEADQMLSVGFAEDVE- 267 (618)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~------~~~~~~~~vViDEaH~~~~~~~~~~~~- 267 (618)
+.. .+.+..++++.........+...++|+|+||+.|...+.... +.+.++++|||||||++.+..+...+.
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 654 356666666655443333444568999999999998887643 557889999999999997765544443
Q ss_pred HHHHHC-------------CCCCcEEEEEee
Q 007085 268 VILERL-------------PQNRQSMMFSAT 285 (618)
Q Consensus 268 ~il~~l-------------~~~~~~l~lSAT 285 (618)
.++... .+..++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322221 167899999998
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=2.7e-21 Score=209.11 Aligned_cols=124 Identities=22% Similarity=0.204 Sum_probs=87.6
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~----i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+++|+|.+++.. +..++++++++|||+|||++|++|++.. ..+++|++||++|++|+.+++.++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 699999998654 4578899999999999999999998653 568999999999999999998875
Q ss_pred CCCCceEEEEcCCch--------H---------------------------------------HHHHHhhcCCCEEEECh
Q 007085 197 APSLDTICVYGGTPI--------S---------------------------------------HQMRALDYGVDAVVGTP 229 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~--------~---------------------------------------~~~~~~~~~~~Ilv~T~ 229 (618)
.+++..+.+.... . ...+.....++|||+||
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 2333333321110 0 00011123579999999
Q ss_pred HHHHHHHHhcCC-------CCCCcceEEEccchhcc
Q 007085 230 GRVIDLIKRNAL-------NLSEVQFVVLDEADQML 258 (618)
Q Consensus 230 ~~l~~~l~~~~~-------~~~~~~~vViDEaH~~~ 258 (618)
..|++......+ .+....+|||||||++.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999875543322 24577899999999983
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=5.8e-24 Score=194.33 Aligned_cols=145 Identities=29% Similarity=0.560 Sum_probs=129.7
Q ss_pred EeccC-CcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEc
Q 007085 323 IATSM-YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (618)
Q Consensus 323 ~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT 400 (618)
...+. ..|...+..+++.. +..++||||++++.++.+++.|.+ .+.+..+|++|++.+|.++++.|++++.+|||||
T Consensus 9 ~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 9 YRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 33344 66777777777754 457999999999999999999965 4889999999999999999999999999999999
Q ss_pred CccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCccc
Q 007085 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQ 468 (618)
Q Consensus 401 ~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 468 (618)
+++++|+|+|++++||++++|+++..|+||+||++|.|+++.|++++.+.+...+..+++.++..++.
T Consensus 88 ~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 88 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 99999999999999999999999999999999999999999999999999988888888877766554
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=188.65 Aligned_cols=181 Identities=20% Similarity=0.241 Sum_probs=129.5
Q ss_pred CHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007085 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
++.+.+.+.......++++|.++++.+..+++++++++||||||+++.++++..+.... .....++++++|+++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISA 122 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHH
Confidence 34445555555566789999999999999999999999999999988888887665421 12246899999999999
Q ss_pred HHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc-cCCCcH-
Q 007085 187 KQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGFA- 263 (618)
Q Consensus 187 ~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~-~~~~~~- 263 (618)
.|+++.+.+.+. .+...+-+.. ..........++|+|+||++|++.+.. .+.++++|||||||++ ++.++.
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGYSV---RFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEEEE---TTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHhccccCceEEEee---chhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHH
Confidence 999999887553 1211111110 000001113478999999999998876 4889999999999985 555555
Q ss_pred HHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCC
Q 007085 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301 (618)
Q Consensus 264 ~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~ 301 (618)
..++.++... ++.|+++||||++... +..|+.+.
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~---~~~~~~~~ 230 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM---FCEYFFNC 230 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH---HHHHTTSC
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH---HHHHcCCC
Confidence 3555555555 5899999999999865 44455443
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=1.6e-21 Score=193.83 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=120.8
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
.+|+++|.++++.++.+.+.+++++||+|||++++.++...+.+ ...++||++|+++|++||++++.++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 47999999999999988889999999999999998877766543 1248999999999999999999998642
Q ss_pred --CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 200 --LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
..+..++++..... ......+|+|+||+.+.+.. ...+.++++||+||||++. ...+..++..+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 34555555544221 22245899999999875432 2236788999999999985 457888888887899
Q ss_pred cEEEEEeeCchHH
Q 007085 278 QSMMFSATMPPWI 290 (618)
Q Consensus 278 ~~l~lSAT~~~~~ 290 (618)
++++|||||++..
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999998654
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=2.2e-18 Score=187.07 Aligned_cols=127 Identities=18% Similarity=0.125 Sum_probs=96.3
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~----i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+++|+|.+++.. +..++++++++|||+|||++|++|++.. ..+++|++||++|+.|+.+++..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 589999997764 4578899999999999999999999872 578999999999999999999876
Q ss_pred CC--CCceEEEEcCCch---------------------------------HHHH------------------HHhhcCCC
Q 007085 197 AP--SLDTICVYGGTPI---------------------------------SHQM------------------RALDYGVD 223 (618)
Q Consensus 197 ~~--~~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~ 223 (618)
.. .+++.++.+..+. .... +.....++
T Consensus 71 ~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 71 REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 43 4555555442211 1111 22234689
Q ss_pred EEEEChHHHHHHHHhcCCCC-CCcceEEEccchhccC
Q 007085 224 AVVGTPGRVIDLIKRNALNL-SEVQFVVLDEADQMLS 259 (618)
Q Consensus 224 Ilv~T~~~l~~~l~~~~~~~-~~~~~vViDEaH~~~~ 259 (618)
|||+||..|++...+..+.+ ....+|||||||++.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999988765544433 4678999999998755
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=5e-19 Score=170.40 Aligned_cols=139 Identities=17% Similarity=0.069 Sum_probs=109.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|+++|.++++.++++.++++++|||+|||++++.++... +.++||++|+++|+.||++++.++ .
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 56999999999999999899999999999999887766532 457999999999999999999984 4
Q ss_pred Cc-eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCc
Q 007085 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
+. +..+.+... ...+|+|+|++.+....... ..++++|||||+|++.+..+ ..++..++ ..+
T Consensus 158 ~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSE
T ss_pred CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHhcc-CCE
Confidence 55 555544433 35799999999997665531 34689999999999976543 44555554 678
Q ss_pred EEEEEeeCchH
Q 007085 279 SMMFSATMPPW 289 (618)
Q Consensus 279 ~l~lSAT~~~~ 289 (618)
+|+|||||+..
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999999863
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.73 E-value=9.3e-18 Score=164.26 Aligned_cols=121 Identities=20% Similarity=0.297 Sum_probs=94.3
Q ss_pred cCCcchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHh--cCCeeeecCcCCHHHHHHHHHHHhcC-Ccc-EEEEc
Q 007085 326 SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIAT 400 (618)
Q Consensus 326 ~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f~~g-~~~-vLVaT 400 (618)
....|...+..++... ..+.++||||++...++.+.+.|.+ .+.+..+||.+++.+|+++++.|+++ +++ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456788888888765 3578999999999999999999975 68899999999999999999999998 676 78999
Q ss_pred CccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEE
Q 007085 401 DVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 401 ~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
+++++|||++.+++||+||+||++..|.|++||++|.|+++.+.++
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 9999999999999999999999999999999999999987765443
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.72 E-value=6.1e-16 Score=169.07 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=69.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC--ccccCCCCCC--ccEEEEcC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD--VAARGLDVPN--VDLIIHYE 419 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~--~~~~GlDi~~--~~~VI~~~ 419 (618)
++.+|||+++....+.+++.|. .+... ..-+++..++..+++.|+ ++..||++|. .+.+|||+++ +..||+..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 5679999999999999988876 33322 334455668999999999 8888999974 8999999987 67899988
Q ss_pred CCCC---h--------------------------hHHHHHhccCCCCCCcceEEEEech
Q 007085 420 LPNT---S--------------------------ETFVHRTGRTGRAGKKGSAILIYTD 449 (618)
Q Consensus 420 ~p~~---~--------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 449 (618)
.|.. + ..+.|.+||+-|..++--+++++++
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 7741 1 1135999999998655444444443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.73 E-value=1.8e-08 Score=110.03 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhCCCCEEEEccCCChhHH--HHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC
Q 007085 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTL--AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (618)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~--~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~ 200 (618)
++.|+++++.++.++.+++++++|+|||. .++++++..+. ...+.++++++||..++.++.+.+......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999994 44444443321 1235689999999999999988776432111
Q ss_pred ce--EEEEcCCchHHHHHHhhcC-CCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 201 DT--ICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 201 ~~--~~~~~~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
.+ ... ...+ ..... ..++-.+|... . +........++++||||||+.+ + ...+..++..++...
T Consensus 224 ~l~~~~~-~~~~------~~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 224 PLTDEQK-KRIP------EDASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHA 290 (608)
T ss_dssp SCCSCCC-CSCS------CCCBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTC
T ss_pred CCCHHHH-hccc------hhhhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCC
Confidence 10 000 0000 00000 11222222211 0 1111122337899999999954 3 567788999998888
Q ss_pred cEEEEEee
Q 007085 278 QSMMFSAT 285 (618)
Q Consensus 278 ~~l~lSAT 285 (618)
|+|++.=+
T Consensus 291 ~liLvGD~ 298 (608)
T 1w36_D 291 RVIFLGDR 298 (608)
T ss_dssp EEEEEECT
T ss_pred EEEEEcch
Confidence 98887543
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.50 E-value=2e-06 Score=90.85 Aligned_cols=135 Identities=15% Similarity=0.151 Sum_probs=80.4
Q ss_pred cCCCCChHHHHHHHHHHhCC-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 117 RGISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
..+..|++-|++++..++.. ..++|.|+.|+|||.+. ..++..+... ....+++++||...+..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHHHh
Confidence 45677999999999976532 38999999999999744 4555555441 11369999999888877665
Q ss_pred HHHHhCCCCceEEEEcCCchHHHHHHh-hc-CCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHH
Q 007085 192 EFHESAPSLDTICVYGGTPISHQMRAL-DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (618)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~i 269 (618)
.+. .....++ ...... .. .....+.. .....+..+++|||||+|.+ -...+..+
T Consensus 93 ~~~-----~~~~T~h------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~----~~~~~~~l 148 (459)
T 3upu_A 93 LSG-----KEASTIH------SILKINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMY----DRKLFKIL 148 (459)
T ss_dssp HHS-----SCEEEHH------HHHTEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGC----CHHHHHHH
T ss_pred hhc-----cchhhHH------HHhccCcccccccchhcc---------cccccccCCCEEEEECchhC----CHHHHHHH
Confidence 541 1111100 000000 00 00001100 11234567899999999976 34566677
Q ss_pred HHHCCCCCcEEEEE
Q 007085 270 LERLPQNRQSMMFS 283 (618)
Q Consensus 270 l~~l~~~~~~l~lS 283 (618)
+..++...+++++.
T Consensus 149 ~~~~~~~~~~~~vG 162 (459)
T 3upu_A 149 LSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHSCTTCEEEEEE
T ss_pred HHhccCCCEEEEEC
Confidence 77776566655543
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.34 E-value=1.5e-06 Score=93.86 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=82.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..+++.|++++..++....++|.++.|+|||.+. ..++..+.. .+.++++++||...+....+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~----- 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG----- 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc-----
Confidence 4589999999999999889999999999999753 344444332 25679999999988887766542
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHH----HHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCC
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL----IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~----l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~ 275 (618)
.. ..|..+++.. +.........+++|||||++.+ -...+..++..++.
T Consensus 254 ~~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 254 RT------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPP 305 (574)
T ss_dssp SC------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCT
T ss_pred cc------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcC
Confidence 11 1111111100 0011123446899999999986 34677778888877
Q ss_pred CCcEEEEE
Q 007085 276 NRQSMMFS 283 (618)
Q Consensus 276 ~~~~l~lS 283 (618)
..++|++.
T Consensus 306 ~~~lilvG 313 (574)
T 3e1s_A 306 GARVLLVG 313 (574)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 77766653
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.32 E-value=8e-07 Score=98.07 Aligned_cols=67 Identities=22% Similarity=0.181 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
.|.+.|++|+..++..++ .||+||+|+|||.+..-.+...+.. +.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 478999999999887654 7999999999998765444443322 568999999999999999998765
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.22 E-value=1.2e-05 Score=87.98 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=55.7
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
...+.+.|.+|+..++.....+|++|+|+|||.+.. .++..+.+ ..+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346899999999999887779999999999998653 34444432 12568999999999999999988764
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.8e-05 Score=88.76 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|.+.|.+|+..++...-.+|+||+|+|||.+... ++..+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 458899999999998877789999999999986543 33343331 1457999999999999999998875
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.07 E-value=2.9e-05 Score=86.85 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+.+.|.+|+..++.....+|++|+|+|||.+. ..++..+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4589999999999988777999999999999865 3444444321 2568999999999999999988764
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.02 E-value=0.00024 Score=78.41 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
..|++-|++++.. ....++|.|+.|||||.+.+.-+...+... .....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE-----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC-----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 356799999999999987654444443221 0123479999999999999999998764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.83 E-value=0.00013 Score=71.32 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=83.8
Q ss_pred CCcchHHHHHHHHHhh-cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccc
Q 007085 327 MYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (618)
Q Consensus 327 ~~~~~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~ 404 (618)
...|...+..++.... .++++|||++..+..+.+.+++.. .+.+..+.|.....++ + -.+..+.+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCC
Confidence 4568888888888764 477999999999999999999964 5888888888544322 1 1244556666676666
Q ss_pred cCCC-----CCCccEEEEcCCCCChhHH-HHHhccCCCC--C--CcceEEEEechh
Q 007085 405 RGLD-----VPNVDLIIHYELPNTSETF-VHRTGRTGRA--G--KKGSAILIYTDQ 450 (618)
Q Consensus 405 ~GlD-----i~~~~~VI~~~~p~~~~~~-~Qr~GR~gR~--g--~~g~~~~~~~~~ 450 (618)
-|+| +..++.||.||..|++..- +|.+-|++|. | ++-.++.+++..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 6675 6789999999999999875 9999999997 3 344556555543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.42 E-value=0.00021 Score=72.50 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|+|+|+..+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|++..|..+++.++.+
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 36899999999877544568999999999998665554443322 23568999999999999888777654
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.18 E-value=0.0017 Score=58.50 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++.+++.+|+|+|||..+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999744
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.13 E-value=0.00096 Score=72.49 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=85.2
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~ 200 (618)
.|+|+|+..+..+...+.+++..+-++|||.+....++..+.. ..+..+++++|+...|..+++.++.++...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 5899999999887545679999999999998665444433332 124589999999999999998887754322
Q ss_pred ----ceEEEEcCCchHHHHHHhhcCCCEEEE--ChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC
Q 007085 201 ----DTICVYGGTPISHQMRALDYGVDAVVG--TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 201 ----~~~~~~~~~~~~~~~~~~~~~~~Ilv~--T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
.......... .. .+.++..|.+. +|..+.- .+.+++|+||+|.+.+ ....+..+...+.
T Consensus 236 p~~~~~~~~~~~~~---~i-~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~--~~~l~~~~~~~l~ 300 (592)
T 3cpe_A 236 PDFLQPGIVEWNKG---SI-ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPN--FHDSWLAIQPVIS 300 (592)
T ss_dssp CTTTSCCEEEECSS---EE-EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTT--HHHHHHHHHHHHS
T ss_pred hHhhccccccCCcc---EE-EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCc--hhHHHHHHHHHhc
Confidence 1111100000 00 11233333333 2333322 1467899999998744 1233444444443
Q ss_pred --CCCcEEEEEeeCch
Q 007085 275 --QNRQSMMFSATMPP 288 (618)
Q Consensus 275 --~~~~~l~lSAT~~~ 288 (618)
.+.++++ ..|+..
T Consensus 301 ~~~~~~ii~-isTP~~ 315 (592)
T 3cpe_A 301 SGRRSKIII-TTTPNG 315 (592)
T ss_dssp SSSCCEEEE-EECCCT
T ss_pred cCCCceEEE-EeCCCC
Confidence 2344444 445543
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.13 E-value=0.0013 Score=67.45 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=63.7
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (618)
.+|.++.|||||.... ..+ + ....+|++||++++..|.+.+.+...
T Consensus 164 ~~I~G~aGsGKTt~I~-~~~----~---------~~~~lVlTpT~~aa~~l~~kl~~~~~-------------------- 209 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-SRV----N---------FEEDLILVPGRQAAEMIRRRANASGI-------------------- 209 (446)
T ss_dssp EEEEECTTSCHHHHHH-HHC----C---------TTTCEEEESCHHHHHHHHHHHTTTSC--------------------
T ss_pred EEEEcCCCCCHHHHHH-HHh----c---------cCCeEEEeCCHHHHHHHHHHhhhcCc--------------------
Confidence 7899999999997432 111 1 12469999999999999888854210
Q ss_pred hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
......-|.|.+.++. ..........++|||||+-.+ ....+..++..++. .+++++.
T Consensus 210 ~~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~----~~~~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 210 IVATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML----HTGCVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp CCCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS----CHHHHHHHHHHTTC-SEEEEEE
T ss_pred cccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC----CHHHHHHHHHhCCC-CEEEEec
Confidence 0001223677776542 121222235899999999865 34455556666544 5555543
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.98 E-value=0.0023 Score=57.98 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=26.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
++-.++.+++|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeecc
Confidence 4457899999999998654443333222 56789988873
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.00045 Score=64.52 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (618)
+.-.++.+++|+|||+.++-.+...... +.+++++.|...- . ........+. ..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---------g~kVli~~~~~d~--r---~~~~i~srlG-------~~----- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---------DVKYLVFKPKIDT--R---SIRNIQSRTG-------TS----- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEEECCCG--G---GCSSCCCCCC-------CS-----
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---------CCEEEEEEeccCc--h---HHHHHHHhcC-------CC-----
Confidence 3447889999999998665444443322 5678888775321 0 0001111111 00
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
-..+.+.+...++..+.... .-.++++|||||++.+
T Consensus 66 -----~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 -----LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -----SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -----ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 01233456666666665432 2346899999999975
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.93 E-value=0.0015 Score=59.51 Aligned_cols=38 Identities=16% Similarity=-0.017 Sum_probs=26.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+=.++.+++|+|||..++-.+.....+ +.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~---------g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA---------KQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEecc
Confidence 347889999999998665444433222 67899999873
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.86 E-value=0.0011 Score=60.79 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=26.5
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
.++.+++|+|||+.++-.+...... +.+++++.|.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEeccC
Confidence 5789999999998665555544332 678999999753
No 111
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.64 E-value=0.0044 Score=66.84 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
.+|..|.+++..+..- ...+|.|+-|.|||.+.-+.+. .+. ..++|.+|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~-----------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA-----------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS-----------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH-----------hCcEEECCCHHHHHHHHHHhhC---
Confidence 5789999999988873 3479999999999964433333 221 2369999998766644433321
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCc
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~ 278 (618)
.|-+..|+.+.. ...+.++||||||=.+ -.+.+..++.. ..
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~----~~ 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR----FP 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT----SS
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh----CC
Confidence 133445655432 2456899999999987 45666666653 34
Q ss_pred EEEEEeeCc
Q 007085 279 SMMFSATMP 287 (618)
Q Consensus 279 ~l~lSAT~~ 287 (618)
.++||.|+.
T Consensus 281 ~v~~~tTv~ 289 (671)
T 2zpa_A 281 RTLLTTTVQ 289 (671)
T ss_dssp EEEEEEEBS
T ss_pred eEEEEecCC
Confidence 688888875
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.49 E-value=0.015 Score=57.85 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=18.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
...+++.+|+|+|||..+ ..+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 357999999999999744 3444443
No 113
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.34 E-value=0.0075 Score=67.14 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|++-|++++... ...++|.|..|||||.+...-+...+.... -....+|+|+.|+..|.++.+++.+....
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 46899999999763 468999999999999876554544443211 12347999999999999999998876321
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHH-HHHhcCCCC-CCcceEEEccch
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNALNL-SEVQFVVLDEAD 255 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~-~l~~~~~~~-~~~~~vViDEaH 255 (618)
....+-|+|...+.. .+......+ -.-.+.|+|+.+
T Consensus 83 --------------------~~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 83 --------------------AAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp --------------------GGTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred --------------------cccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 002356888877743 333321111 112356777765
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.32 E-value=0.0075 Score=55.92 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=27.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+=.++.+++|+|||..++-.+..... .+.+++++-|.+
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~---------~g~kvli~kp~~ 57 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQI---------AQYKCLVIKYAK 57 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT---------TTCCEEEEEETT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---------CCCeEEEEeecC
Confidence 44788999999999866555554432 367899998864
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.29 E-value=0.0048 Score=56.50 Aligned_cols=38 Identities=13% Similarity=-0.009 Sum_probs=25.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
.=.++.+++++|||...+-.+...... +.+++|+.|..
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~---------g~kvli~kp~~ 66 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYA---------KQKVVVFKPAI 66 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---------CCceEEEEecc
Confidence 346889999999997554444333221 56799999964
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.012 Score=58.07 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=19.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
..+++|.+|+|+|||.++ -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999755 44445543
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.27 E-value=0.0037 Score=56.46 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=26.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
+=.++.+++|+|||...+..+-....+ +.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 347889999999997555454444332 5678999886
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.17 E-value=0.0013 Score=57.33 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.+..+++.+++|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999743
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.12 E-value=0.02 Score=55.72 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHH-HHHHHHHH--hCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPI-QKAVLEPA--MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~-Q~~~i~~i--~~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.++.++.|...-.. +. ..+.+..+ .....+++.+|+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 445677777777777777543211 11 11222222 34467999999999999754
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.09 E-value=0.027 Score=51.52 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=17.7
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
..+++.+|+|+|||..+ ..+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999854 3344333
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.048 Score=50.30 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=25.5
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
....+|||||+|.+... ....+..++...+.+..+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987432 34455556666555555555443
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.86 E-value=0.039 Score=57.30 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=24.9
Q ss_pred CcceEEEccchhccCC-CcHHHHHHHHHHC-CCCCcEEEEEeeCc
Q 007085 245 EVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMP 287 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~-~~~~~~~~il~~l-~~~~~~l~lSAT~~ 287 (618)
..++|+|||+|.+... .....+..++..+ ....++|+.|..++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 5678999999998653 1334444555443 33455555444333
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.058 Score=54.74 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=18.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
...++|.+|+|+|||..+ ..++..+
T Consensus 44 ~~~vll~G~~G~GKT~l~-~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA-RLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999754 3334433
No 124
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.75 E-value=0.013 Score=64.70 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
.|++-|++++... ...++|.|..|||||.+.+--+...+.+.. -....+|+|+.|+..+.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4889999999864 567999999999999876555554443311 1134799999999999999999988754
No 125
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.09 Score=53.21 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=35.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (618)
.|..+|++++=-++.++.|+..-.. |.. -+.+.. +..-+.+|+.+|+|+|||+.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~---Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIEL---PVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH---HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 4667899988777777777653221 211 111221 223467999999999999854
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.64 E-value=0.075 Score=54.59 Aligned_cols=55 Identities=11% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCCcceEEEccchhcc---CCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 243 LSEVQFVVLDEADQML---SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~---~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..++++||||++-++. +..+...+..+...+.+..-+++++|+........+..|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 3578999999998653 333556667777777777778888998765544444444
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.63 E-value=0.0078 Score=60.23 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHh----CCC---CEEEEccCCChhHHHHH
Q 007085 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 122 l~~~Q~~~i~~i~----~~~---~~li~~~tGsGKT~~~l 154 (618)
+.|+|.+++..+. +++ .+|+.+|.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4577777765543 332 38999999999998553
No 128
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.40 E-value=0.14 Score=46.26 Aligned_cols=135 Identities=18% Similarity=0.039 Sum_probs=70.8
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH-HHHHHHHHHHHhCCCCceEEEEcC-----Cc
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGG-----TP 210 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~-La~q~~~~l~~~~~~~~~~~~~~~-----~~ 210 (618)
..++|....|.|||.+++-.++..+-. +.+|+|+.-.+. ...--.+.+..+ . +.... .+. ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF~Kg~~~~gE~~~l~~L-~-v~~~~-~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQFIKGTWPNGERNLLEPH-G-VEFQV-MATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEESSCCSSCCHHHHHHGGG-T-CEEEE-CCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEeeCCCCCccHHHHHHhC-C-cEEEE-cccccccCCC
Confidence 469999999999999887777766643 778888842221 000001112222 1 11111 111 00
Q ss_pred hHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCC--cHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 211 ~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~--~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
......... -..| ....+ .+.-..+++||+||+-..+..+ -.+.+..++...+....+|+++-.+|+
T Consensus 97 ~~~~~~~~a---------~~~l-~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 97 NREADTAAC---------MAVW-QHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp GHHHHHHHH---------HHHH-HHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred CcHHHHHHH---------HHHH-HHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000000000 1111 11221 2334679999999997543332 345666777777767777777777777
Q ss_pred HHHHHH
Q 007085 289 WIRSLT 294 (618)
Q Consensus 289 ~~~~~~ 294 (618)
++.+++
T Consensus 166 ~l~e~A 171 (196)
T 1g5t_A 166 DILDLA 171 (196)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 655543
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.38 E-value=0.049 Score=48.66 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999754
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.36 E-value=0.15 Score=49.06 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999855
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.32 E-value=0.032 Score=48.01 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=17.4
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (618)
.....++++.+|+|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345678999999999999855
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.17 E-value=0.058 Score=53.06 Aligned_cols=25 Identities=12% Similarity=0.293 Sum_probs=18.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
..++++.+|+|+|||..+. ++...+
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHH
Confidence 4689999999999997543 344343
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.17 E-value=0.024 Score=53.34 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=15.9
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
....+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999744
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.13 E-value=0.41 Score=42.55 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=17.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
..+++.+++|+|||..+ ..++..+
T Consensus 44 ~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CceEEECCCCCCHHHHH-HHHHHHH
Confidence 56999999999999754 3333333
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.11 E-value=0.034 Score=55.19 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=31.7
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh-----CCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-----~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++++.|...-. .|.. .+.+. ..+.+|+.+|+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44567788777777777764321 1111 11111 1256999999999999854
No 136
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.088 Score=54.04 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=36.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCC---CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 95 KDEGLDISKLDISQDIVAALARRGI---SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~---~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..+..+|+++.--++.++.|...-. ..|--++... +..-+.+|+.+|+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 3567789999888888888865321 1222222221 122367999999999999854
No 137
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.96 E-value=0.032 Score=65.90 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCC
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~ 200 (618)
++|+-|.++|..- +.+++|.|..|||||.+.+--++..+..... .-...++|+|++|+..+..+.+.+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 4899999999765 6799999999999998766555555433110 1123479999999999999998887643100
Q ss_pred ceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhc-C--CCCCCcceEEEccch
Q 007085 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-A--LNLSEVQFVVLDEAD 255 (618)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~--~~~~~~~~vViDEaH 255 (618)
-. ..... ....+.+..-..+-|.|...+...+.+. . +.+ +-.+-|+||..
T Consensus 85 ~~---~~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~-~~~f~~~d~~~ 137 (1232)
T 3u4q_A 85 LV---QRPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDL-DPGFRIADQTE 137 (1232)
T ss_dssp HH---HSTTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTC-CTTCEECCHHH
T ss_pred hh---cCcch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCC-CCCCeeCCHHH
Confidence 00 00000 1111222222456789988885444332 1 111 22234777755
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.95 E-value=0.055 Score=54.97 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=17.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
..++|.+|+|+|||..+ ..++..+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999754 3444443
No 139
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.91 E-value=0.013 Score=50.52 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.3
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (618)
+....++++.+++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 445678999999999999744
No 140
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.90 E-value=0.071 Score=52.24 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHH-HHHHH--HhCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++++.|...-. .|... +.+.. +...+.+++.+|+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 44567777766777766654211 11110 11111 233567999999999999854
No 141
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.86 E-value=0.059 Score=53.42 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...++|||||+|.+........+..+++..+.+.++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999851113444555555555555555533
No 142
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.71 E-value=0.14 Score=56.87 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=73.3
Q ss_pred CcchHH-HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC
Q 007085 328 YEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (618)
Q Consensus 328 ~~~~~~-l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~ 401 (618)
.-|... +..++.....+.+++|.+|++.-+..+++.+.+ .+++..+||+++..++..+++.+.+|+.+|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 344333 333344444577999999999999888887754 37889999999999999999999999999999997
Q ss_pred c-cccCCCCCCccEEEEcCCCC
Q 007085 402 V-AARGLDVPNVDLIIHYELPN 422 (618)
Q Consensus 402 ~-~~~GlDi~~~~~VI~~~~p~ 422 (618)
. +...+++.++.+||.-....
T Consensus 480 ~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp THHHHCCCCSCCCEEEEESCCC
T ss_pred HHHhhhhhccCCceEEecccch
Confidence 4 44557888888888765554
No 143
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.2 Score=51.02 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=35.1
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcC---CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..+..+|++++=-+++++.|+..- +..+--++... +..-+.+|+.+|+|+|||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 456778999986777777775431 11222222221 122367999999999999854
No 144
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.19 Score=50.13 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
....+|||||+|.+... ....+..+++..+....+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 45689999999987432 33455566666655555555443
No 145
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.25 Score=50.84 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=35.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+..+|+++.--+++++.|++.-.. |.. -+.+.. +..-+.+|+.+|+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~---pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVEL---PLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH---HhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4667899998888888888654221 111 122222 223467999999999999854
No 146
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.23 Score=50.85 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=33.7
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+..+|++++=-+++++.|...-.. |.. .+.+.. +...+.+|+.+|+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~---pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVEL---PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH---HHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 4667888888777777777542111 111 111111 223356999999999999854
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.15 Score=50.22 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
....+|||||+|.+... ....+..+++..+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45779999999987432 2344555566655555555544
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.38 E-value=0.12 Score=49.25 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
...+++.+|+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999754
No 149
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.16 Score=52.14 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHH--HhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+..+|+++.--++.++.|...-.. |.. -+.+.. +..-+.+|+.+|+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~---pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIEL---PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHH---HHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 5677899988777777777543111 111 111111 222367999999999999854
No 150
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.31 E-value=0.14 Score=52.29 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=29.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHHH-hCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPA-MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i-~~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-...+++.|...-.. +.. .+.+..+ ...+++|+.+|+|+|||..+
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVIL---PSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHH---hccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 445677776666666666432100 000 0000011 12367999999999999854
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.24 E-value=0.19 Score=50.71 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
...++|.+++|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999744
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.23 E-value=0.42 Score=47.40 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999854
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.17 E-value=0.26 Score=46.21 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=30.6
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
.+.-++|.+++|+|||..++..+...+ . .+..++++.-. ....++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~--------~~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K--------MGEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEcc-CCHHHHHHHHHH
Confidence 456689999999999986544433332 2 13457776543 234555555543
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.17 E-value=0.061 Score=54.69 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.+|+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999744
No 155
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.12 E-value=0.15 Score=53.62 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=28.2
Q ss_pred cceEEEccchhccCCC----------cHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 246 VQFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 246 ~~~vViDEaH~~~~~~----------~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
..+|+|||+|.+.... ....+..++..+.....++++.||=.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886421 223455556666666777888887543
No 156
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.09 E-value=0.52 Score=42.48 Aligned_cols=71 Identities=18% Similarity=0.374 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.|.+. .+.+..+++..+...+...++ ....|||+| + +....+++.++++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~-~~~~Gldi~~v~~ 125 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----D-VASKGLDFPAIQH 125 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----H-HHHTTCCCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----C-chhcCCCcccCCE
Confidence 357999999999999999999876 477888888887766554443 358999999 3 3345677889998
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 126 VI~ 128 (191)
T 2p6n_A 126 VIN 128 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.07 E-value=0.13 Score=50.54 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999855
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.97 E-value=0.19 Score=46.69 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l 154 (618)
.+.-++|.+++|+|||..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45668999999999997443
No 159
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.90 E-value=0.2 Score=51.38 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=66.3
Q ss_pred HHHhhcCCcEEEEecchhHHHHHHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----cccCCC
Q 007085 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AARGLD 408 (618)
Q Consensus 338 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~GlD 408 (618)
+.....+.++||.+|++.-+..+++.+.+ .+.+..+||+.+..++...++.+..++.+|+|+|+- +.. ++
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~ 136 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LS 136 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hc
Confidence 33334677999999999999999998876 568999999999999988999999999999999962 222 55
Q ss_pred CCCccEEEEcCC
Q 007085 409 VPNVDLIIHYEL 420 (618)
Q Consensus 409 i~~~~~VI~~~~ 420 (618)
..++++||.-.+
T Consensus 137 ~~~~~~iViDEa 148 (414)
T 3oiy_A 137 QKRFDFVFVDDV 148 (414)
T ss_dssp TCCCSEEEESCH
T ss_pred cccccEEEEeCh
Confidence 667888887555
No 160
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.76 E-value=0.021 Score=56.73 Aligned_cols=50 Identities=22% Similarity=0.142 Sum_probs=29.9
Q ss_pred hCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
..+.-++|.+++|+|||..++..+.... . .+..++|+..- .-..|+..++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a-~--------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL-N--------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH-H--------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEeCC-CCHHHHHHHH
Confidence 3445589999999999975544443333 2 15567777642 3334444444
No 161
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.72 E-value=0.13 Score=53.50 Aligned_cols=113 Identities=19% Similarity=0.081 Sum_probs=53.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEE-EcCCchHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~-~~~~~~~~~ 214 (618)
+.-++|.|++|+|||..++..+...... .+..++++..- .-..|+..++......+....+ .+......+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~ 270 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK--------EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVRLGQLTDRDF 270 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHH
Confidence 3458999999999997554444433221 13457776542 2233444443221111110000 111122221
Q ss_pred HH------HhhcCCCEEEE-----ChHHHHHHHHhcCCCCCCcceEEEccchhccC
Q 007085 215 MR------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (618)
Q Consensus 215 ~~------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~ 259 (618)
.+ .+. ...+.+- |...+...+.+-.. -..+++||||..+.+..
T Consensus 271 ~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 271 SRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 11 122 2345553 44555443332110 12588999999998864
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.67 E-value=0.11 Score=54.07 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 163
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.58 E-value=1.1 Score=44.00 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh-----CCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-----~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++++.|+..-. .|.+ .+.+. ..+.+|+.+|+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 44567788777777777653210 1111 11221 2256999999999999854
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.56 E-value=0.12 Score=53.82 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=24.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
.+.-++|.|++|+|||..++..+...... .+..++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEEC
Confidence 34558999999999997554444333221 1345777763
No 165
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.56 E-value=0.12 Score=57.48 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=33.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCh-HHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+...|+++..-+++++.|+..-...+. |.+..-+ .+...+.+|+.+|+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 4556788888778888887654222111 1000000 0112256999999999999744
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.49 E-value=0.52 Score=47.07 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
..+.+++|+||+|.+ +......+.++++..+.+..+|+.|-.+.
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 346789999999994 44345667777777766666666665544
No 167
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.42 E-value=0.37 Score=49.50 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=33.1
Q ss_pred CCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..+++||||.+=++... .....+..+.....++.-++++.||........+..|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 35788999998654321 1334455555556666677888888765554444444
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.37 E-value=0.18 Score=50.65 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHH-----hCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA-----MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i-----~~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+.+++.|...-. .|. -.+.+ ...+.+|+.+|+|+|||+.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~---~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTH---HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 44567777655666666643211 110 01112 12356999999999999855
No 169
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.24 E-value=0.38 Score=42.06 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=55.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. .+.+..++++.+...+...+. ...+|||+| .+....+++.++++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gld~~~~~~ 106 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT------DVAARGIDIENISL 106 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC------GGGTTTCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC------ChhhcCCchhcCCE
Confidence 457999999999999999999886 477888888877666554433 358999999 23345677888999
Q ss_pred EEEcc
Q 007085 249 VVLDE 253 (618)
Q Consensus 249 vViDE 253 (618)
||.-+
T Consensus 107 Vi~~~ 111 (163)
T 2hjv_A 107 VINYD 111 (163)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88533
No 170
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.07 E-value=0.63 Score=43.09 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.+|+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999744
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.03 E-value=0.45 Score=49.66 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=55.1
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCC------
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT------ 209 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~------ 209 (618)
+....+.+-+||+||++. ..++.. .+..+|||+|+..+|.|++++++.+++.. +..+-..
T Consensus 14 ~~~~~l~g~~gs~ka~~~-a~l~~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~--v~~fp~~e~lpyd 79 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLV-AEIAER-----------HAGPVVLIAPDMQNALRLHDEISQFTDQM--VMNLADWETLPYD 79 (483)
T ss_dssp TCEEEEECCCTTHHHHHH-HHHHHH-----------SSSCEEEEESSHHHHHHHHHHHHHTCSSC--EEECCCCCSCTTC
T ss_pred CCeEEEeCCCchHHHHHH-HHHHHH-----------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc--EEEEeCccccccc
Confidence 456889999999999743 222211 13358999999999999999999987653 3322211
Q ss_pred --ch-----HHHHHH----hhcCCCEEEEChHHHHH
Q 007085 210 --PI-----SHQMRA----LDYGVDAVVGTPGRVID 234 (618)
Q Consensus 210 --~~-----~~~~~~----~~~~~~Ilv~T~~~l~~ 234 (618)
.. ..+... ......|||+|...++.
T Consensus 80 ~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 80 SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp SSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred ccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 11 112222 22346799999888864
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.78 E-value=0.99 Score=45.23 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+++.+|+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999854
No 173
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.73 E-value=0.14 Score=53.29 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHH-HHHH-HHhCCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQK-AVLE-PAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i~-~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+...|+++.-..++++.|...-. .|.+. +.+. .....+.+|+.+|+|+|||+.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 445677777766777776654211 11110 0000 1122367999999999999854
No 174
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.71 E-value=0.51 Score=41.76 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. .+.+..++++.+...+...+. ...+|||+| .+....+++.++++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT------~~~~~Gid~~~~~~ 105 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT------NVCARGIDVKQVTI 105 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC------CSCCTTTCCTTEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe------cchhcCCCcccCCE
Confidence 468999999999999999999875 467888888887766654433 358999999 23345667888998
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 106 Vi~ 108 (175)
T 2rb4_A 106 VVN 108 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 175
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.45 E-value=0.5 Score=41.33 Aligned_cols=73 Identities=10% Similarity=0.246 Sum_probs=55.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++..+..+++.+.+. .+.+..++++.+...+...+. ....|||+| .+....+++.++++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~G~d~~~~~~ 101 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST------DLLARGIDVQQVSL 101 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE------GGGTTTCCCCSCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc------ChhhcCCCcccCCE
Confidence 467999999999999999999875 467888888877666554433 358999999 23445677888998
Q ss_pred EEEcc
Q 007085 249 VVLDE 253 (618)
Q Consensus 249 vViDE 253 (618)
||.-+
T Consensus 102 Vi~~~ 106 (165)
T 1fuk_A 102 VINYD 106 (165)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88543
No 176
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.25 E-value=0.42 Score=47.52 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=26.1
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...+++|+||+|.+... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987532 3455666667666566555544
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.24 E-value=0.41 Score=47.12 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
...+++.+|+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999754
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.14 E-value=0.39 Score=44.88 Aligned_cols=22 Identities=23% Similarity=-0.034 Sum_probs=17.1
Q ss_pred CCCCEEEEccCCChhHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~ 156 (618)
.+.-++|.+|+|+|||..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4566899999999999855433
No 179
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.98 E-value=0.54 Score=45.91 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
....+++||||+|.|... -...+.+.++.-++...+|+.|
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 346899999999998532 2333445555444444444444
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.97 E-value=0.58 Score=46.89 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHH-HHHH-HHhCCCCEEEEccCCChhHHHH
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQK-AVLE-PAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i~-~i~~~~~~li~~~tGsGKT~~~ 153 (618)
...|+++.-.+..++.|...-. .|... +.+. .....+.+|+.+|+|+|||..+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 4456666556666666643210 01000 0000 1122467999999999999854
No 181
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.96 E-value=0.56 Score=43.06 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++.-+..+++.+.+. .+.+..++++.+...+...+. ...+|+|+| .+....+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT------~~~~~Gidi~~v~~ 102 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT------DVAARGLDIPQVDL 102 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC------TTTTCSSSCCCBSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec------ChhhcCCCCccCcE
Confidence 457999999999999999999876 477888899888776654443 358999999 34455678889999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 883
No 182
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.65 E-value=0.44 Score=46.70 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=24.0
Q ss_pred CcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
...+|||||+|.+... ....+..+++..+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4789999999987432 2333455556555555555554
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.59 E-value=0.27 Score=50.31 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=13.8
Q ss_pred CCEEE--EccCCChhHHHH
Q 007085 137 RDMIG--RARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li--~~~tGsGKT~~~ 153 (618)
..++| .++.|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35788 899999999744
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.58 E-value=0.33 Score=51.46 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCcceEEEccchhccCCC--cHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 244 SEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~--~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
....+|||||+|.+.... ....+..++.. ....+|+++++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 345789999999986532 22445555554 3456777777643
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.58 E-value=0.35 Score=47.62 Aligned_cols=52 Identities=13% Similarity=-0.078 Sum_probs=30.9
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+..+.-++|.+++|+|||..++..+...+.+ +..++++..- .-..|+..++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHH
Confidence 3345569999999999997554444433221 3567777642 33444444443
No 186
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.55 E-value=0.4 Score=58.31 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHhC------CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 130 LEPAMQ------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 130 i~~i~~------~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
++.++. +.++++.+|+|+|||..++..+.+... .+.+++|+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEcc
Confidence 555555 578999999999999877555444432 26678888765
No 187
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.53 E-value=1.4 Score=47.21 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (618)
..++||+|+++..+..+++.+.+.++ .+.+..++++.+...+...+. ...+||||| .+....+++.+++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT------~~~~~GiDip~v~ 412 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT------DVGARGMDFPNVH 412 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC------GGGTSSCCCTTCC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc------chhhcCCCcccCC
Confidence 56899999999999999999988755 677888888887766554433 458999999 3445677899999
Q ss_pred eEEEcc
Q 007085 248 FVVLDE 253 (618)
Q Consensus 248 ~vViDE 253 (618)
+||.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 988544
No 188
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.52 E-value=1.3 Score=38.87 Aligned_cols=73 Identities=10% Similarity=0.195 Sum_probs=55.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. .+.+..+++..+...+...+. ....|||+| .+....+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT------~~~~~Gldi~~~~~ 102 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT------NLFGRGMDIERVNI 102 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES------SCCSTTCCGGGCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC------CchhcCcchhhCCE
Confidence 457999999999999999999886 467888888887666554433 358999999 22344567788888
Q ss_pred EEEcc
Q 007085 249 VVLDE 253 (618)
Q Consensus 249 vViDE 253 (618)
||.-+
T Consensus 103 Vi~~d 107 (172)
T 1t5i_A 103 AFNYD 107 (172)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88543
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.49 E-value=0.64 Score=45.08 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHH-HHHHHH-hCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEPA-MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~-~~i~~i-~~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+..++.|...-. .+... +.+..+ ...+.+++.+|+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34567777666777766654211 01000 000111 12467999999999999854
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.47 E-value=0.58 Score=42.90 Aligned_cols=22 Identities=18% Similarity=-0.091 Sum_probs=16.8
Q ss_pred CCCCEEEEccCCChhHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~ 156 (618)
.+.-++|.+++|+|||..+...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999755433
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.31 E-value=0.17 Score=47.78 Aligned_cols=43 Identities=9% Similarity=0.051 Sum_probs=25.7
Q ss_pred CCcceEEEccchhccC-----CCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 244 SEVQFVVLDEADQMLS-----VGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~-----~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
.+.++||+||...+++ ......+..++..+...-..++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999997764 333444666666654323344444443
No 192
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.96 E-value=0.3 Score=43.13 Aligned_cols=121 Identities=9% Similarity=0.074 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHhCC--CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 122 LFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
-.+-|..++..++.. +-.+|.+.-|++||...+..++.. .+ ..+..+.+|+|+..-.....+...--.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~-a~-------~~Gr~V~vLAp~~~s~~~l~~~~~l~~-- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMM-AR-------EQGREVQIIAADRRSQMNMKQDERLSG-- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHH-HH-------HTTCCEEEECSTTHHHHHHSCTTTCSS--
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHH-HH-------hcCeEEEEEcCchHHHHHHHhhcCcCc--
Confidence 346788899888654 347889999999998754444333 22 237789999999766554433322100
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC-CCCCc
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQ 278 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l-~~~~~ 278 (618)
+++ +. ..+......+..=+++|||||-.+. ..++..+++.. ..+.|
T Consensus 105 -----------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 105 -----------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp -----------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred -----------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 000 11 1122223334455689999999883 45555555543 34678
Q ss_pred EEEEEee
Q 007085 279 SMMFSAT 285 (618)
Q Consensus 279 ~l~lSAT 285 (618)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 7777544
No 193
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.88 E-value=0.54 Score=42.07 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=44.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh----hcCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++..+..+++.|... .+.+..++++.+...+...+ .....|||+| + +....+++.++++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~-~~~~Gldi~~~~~ 117 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----A-VAARGLDISNVKH 117 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBSE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----C-hhhcCCCcccCCE
Confidence 568999999999999999999875 46778888776654443322 2458999999 2 2334567888888
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 118 VI~ 120 (185)
T 2jgn_A 118 VIN 120 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 194
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.85 E-value=0.69 Score=46.14 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=25.1
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
.+.-++|.+++|+|||..++..+...... +.+++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---------GGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEEC
Confidence 34569999999999998655444433221 446777764
No 195
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.82 E-value=4.3 Score=39.94 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=29.8
Q ss_pred ChHHHHHHHHhcCCCCCCcceEEEccchhccC---CCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS---VGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 228 T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~---~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
+...+.+.+..... .--+|||||+|.+.. ..+...+..++...+ +..+| ++.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i-~~g~ 178 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFI-MSGS 178 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEE-EEES
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEE-EEcC
Confidence 34555555554211 234799999999764 345566666666542 34444 4444
No 196
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.82 E-value=2.1 Score=40.36 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=27.9
Q ss_pred CCCccCCCCCHHHHHHHHHcC--CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 98 GLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
...|+++.-.+.+++.+...- +..+..++.. .....+.+++.+|+|+|||..+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 346777766676666654310 0000000000 0111346999999999999744
No 197
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.77 E-value=0.52 Score=54.69 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=66.2
Q ss_pred HHhhcCCcEEEEecchhHHHHHHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----cccCCCC
Q 007085 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AARGLDV 409 (618)
Q Consensus 339 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~GlDi 409 (618)
.....+.++||.+|++.-+..+++.+.+ .+.+..+||+++..++...++.+.++..+|+|+|.- +.. +++
T Consensus 116 ~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~ 194 (1104)
T 4ddu_A 116 WLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQ 194 (1104)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHT
T ss_pred HHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcc
Confidence 3334667899999999999999999977 358899999999989999999999999999999962 222 556
Q ss_pred CCccEEEEcCC
Q 007085 410 PNVDLIIHYEL 420 (618)
Q Consensus 410 ~~~~~VI~~~~ 420 (618)
.++.+||.-.+
T Consensus 195 ~~l~~lViDEa 205 (1104)
T 4ddu_A 195 KRFDFVFVDDV 205 (1104)
T ss_dssp SCCSEEEESCH
T ss_pred cCcCEEEEeCC
Confidence 78888887555
No 198
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.71 E-value=1.8 Score=46.44 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC-CCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (618)
..++||+|+++..+..+++.+.+.++ .+.+..++++.+...+...+. ...+||||| .+....+++.+++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT------~~~~~GiDip~v~ 361 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT------DVGARGMDFPNVH 361 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC------GGGTSSCCCTTCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc------chhhcCCCcccCC
Confidence 56899999999999999999988654 577888888887766554433 458999999 3445577889999
Q ss_pred eEEEcc
Q 007085 248 FVVLDE 253 (618)
Q Consensus 248 ~vViDE 253 (618)
+||.-.
T Consensus 362 ~VI~~~ 367 (579)
T 3sqw_A 362 EVLQIG 367 (579)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 988544
No 199
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.52 E-value=0.88 Score=53.13 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=73.2
Q ss_pred eccCCcchHHHH-HHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-----CCeeeecCcCCHHHHHHHHHHHhcCCccEE
Q 007085 324 ATSMYEKPSIIG-QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (618)
Q Consensus 324 ~~~~~~~~~~l~-~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vL 397 (618)
...-.-|..... .++.....+.+++|.||+..-+..+++.+.+. +.+..+++..+..++..+++.+.+|+.+|+
T Consensus 631 ~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIv 710 (1151)
T 2eyq_A 631 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 710 (1151)
T ss_dssp CCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 334444554332 23333445679999999999999998888652 567889999999999999999999999999
Q ss_pred EEcC-ccccCCCCCCccEEEEcCCC
Q 007085 398 IATD-VAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 398 VaT~-~~~~GlDi~~~~~VI~~~~p 421 (618)
|+|. .+...+.+.++.+||.-...
T Consensus 711 V~T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEEESGG
T ss_pred EECHHHHhCCccccccceEEEechH
Confidence 9995 44555788888888864443
No 200
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.51 E-value=0.17 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=17.0
Q ss_pred HhCCCCEEEEccCCChhHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l 154 (618)
+..+.-++|.+++|+|||..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 3455668999999999997443
No 201
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.39 E-value=0.35 Score=46.98 Aligned_cols=17 Identities=18% Similarity=0.095 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 202
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.23 E-value=0.31 Score=47.75 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
++++.+|+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 203
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.22 E-value=0.27 Score=50.87 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=29.6
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
.+.-++|.|++|+|||..++..+.....+ +..++++..- .-..|+..++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEECSS-SCTTHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEECC-CCHHHHHHHH
Confidence 34458999999999998655444443322 4567777642 3333444443
No 204
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.88 E-value=0.96 Score=45.34 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+|.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999754
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.74 E-value=0.29 Score=46.02 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+.-++|.+++|+|||..++..+++.+.+. +..++++.-. +-..++.+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--------CCCceeeccc-CCHHHHHHHHHHc
Confidence 35689999999999976655444433331 3346666532 3345555555443
No 206
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.21 E-value=2.1 Score=41.45 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=24.7
Q ss_pred CCcceEEEccchhcc-CCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 244 ~~~~~vViDEaH~~~-~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.++++|||||.-.+. +......+..+...+.+..-++.+.++...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~ 224 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 224 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH
Confidence 467899999994432 111223344444444444445566776443
No 207
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.97 E-value=0.6 Score=48.63 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=29.0
Q ss_pred CCCccCCCCCHHHHHHHHHcC--CCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007085 98 GLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (618)
...|+++.-.++.++.++..- +..+ ..+..+- -.+.+++.+|+|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 446777766666666664320 0111 1111111 1246999999999999854
No 208
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.93 E-value=1.1 Score=43.13 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=19.1
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHH
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l~~ 156 (618)
-+..+.-++|.++.|+|||..++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHH
Confidence 3556677999999999999855433
No 209
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.84 E-value=2.8 Score=41.89 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=25.0
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
.+.-++|.+++|+|||..++..+. .+.. .+..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~-~~~~--------~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVA-QAQK--------AGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HHHH--------TTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH-HHHH--------CCCeEEEEECC
Confidence 345689999999999975544433 3322 13467777643
No 210
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.80 E-value=1.9 Score=43.75 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=56.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (618)
...++||+|+++..+..+++.+.+. .+.+..+++..+...+...++ ...+||||| + +....+++.+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~-~~~~Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----A-VAARGLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----H-HHHTTSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----C-hhhcCCCcccCC
Confidence 3668999999999999999999875 467888888887666544433 358999999 3 344567888999
Q ss_pred eEEE
Q 007085 248 FVVL 251 (618)
Q Consensus 248 ~vVi 251 (618)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.76 E-value=2.2 Score=42.44 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=25.2
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
+.-++|.+|+|+|||..+ +.++..+.. .+..++++....
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeccc
Confidence 456899999999999754 444433322 145677776543
No 212
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.67 E-value=1.1 Score=43.67 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++.-++.+++.+.+. .+.+..++++.+...+...+. ...+|||+| .+....+++.++++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT------~va~~Gidi~~v~~ 99 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT------DVAARGLDIPQVDL 99 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC------STTTCSTTCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe------chhhcCccccceeE
Confidence 457999999999999999998775 577888898887666554443 358999999 34455678889999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.66 E-value=2.4 Score=38.15 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=15.1
Q ss_pred CCCCEEEEccCCChhHHH
Q 007085 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~ 152 (618)
.++-++|.+|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 456689999999999973
No 214
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=87.56 E-value=3.5 Score=44.93 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=60.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.++||+|+|+..++.+++.|.+. ++.+..+++......+...+. ..++|+|+| .+....+++.++++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT------~~l~~GlDip~v~l 516 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI------NLLREGLDIPEVSL 516 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES------CCCSTTCCCTTEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec------chhhCCcccCCCCE
Confidence 568999999999999999999886 467777888777666554432 358999999 23455678899999
Q ss_pred EEEccchhc
Q 007085 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||+-|++.+
T Consensus 517 Vi~~d~d~~ 525 (661)
T 2d7d_A 517 VAILDADKE 525 (661)
T ss_dssp EEETTTTCC
T ss_pred EEEeCcccc
Confidence 999998764
No 215
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.36 E-value=1.2 Score=44.52 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
.+.-++|.+++|+|||..++..+...... +..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeC
Confidence 34668999999999998665444433321 446777765
No 216
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.23 E-value=2.7 Score=40.67 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCC---CCCcEEEEEeeCc
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLP---QNRQSMMFSATMP 287 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~---~~~~~l~lSAT~~ 287 (618)
.+.++||+|.+-+... ....+..+...+. +...++++.+|..
T Consensus 181 ~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp GGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred cCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 6789999997654321 2344455555543 2223677777755
No 217
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.01 E-value=2.9 Score=38.18 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=53.5
Q ss_pred CcEEEEecchhHHHHHHHHHHh------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----c-ccCCCCCCc
Q 007085 345 GKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-ARGLDVPNV 412 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~-~~GlDi~~~ 412 (618)
.++||.|+++.-++.+++.+.+ .+.+..++++.+..++. +.+.++..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999988887754 46788889988766543 3345567799999952 2 233677788
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
++||.-.+.
T Consensus 160 ~~lViDEah 168 (220)
T 1t6n_A 160 KHFILDECD 168 (220)
T ss_dssp CEEEEESHH
T ss_pred CEEEEcCHH
Confidence 888875544
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.43 E-value=1.1 Score=49.74 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=25.8
Q ss_pred CcceEEEccchhccCCC----------cHHHHHHHHHHCCCCCcEEEEEee
Q 007085 245 EVQFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~~----------~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
.-.+|+|||+|.+.... ...++...+..+....+++++-||
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 45689999999886321 123344445555556677777777
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.31 E-value=0.54 Score=52.50 Aligned_cols=16 Identities=38% Similarity=0.281 Sum_probs=14.3
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
++++.+|+|+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999855
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.00 E-value=0.83 Score=48.66 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999744
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.95 E-value=2.2 Score=41.97 Aligned_cols=22 Identities=18% Similarity=-0.115 Sum_probs=17.0
Q ss_pred CCCEEEEccCCChhHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~ 157 (618)
+.-++|.+++|+|||..++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHH
Confidence 4568999999999998554433
No 222
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.52 E-value=2.1 Score=42.26 Aligned_cols=17 Identities=12% Similarity=-0.162 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhHHH
Q 007085 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (618)
+..++|.++.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 46799999999999973
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.51 E-value=3.5 Score=40.12 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=27.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La 186 (618)
-++|.+|+|+|||..++..+...... +.+.+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchhh
Confidence 58999999999998665554443321 1245788887654443
No 224
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=85.42 E-value=2.4 Score=42.90 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=55.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ...+..+++..+...+...++ ...+|||+| .+....+++.++++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT------NVCARGIDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC------GGGTSSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc------CccccCCCccCCCE
Confidence 458999999999999999999886 467888888887766654432 358999999 34456678889999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 338 Vi~ 340 (412)
T 3fht_A 338 VIN 340 (412)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 225
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=85.39 E-value=1.1 Score=46.26 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=47.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
+.++||+||+++-++.+++.|++. .+.+..+++...............+||||| .+....+++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT------~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKTFEREYPTIKQKKPDFILAT------DIAEMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSSCC--------CCCSEEEES------SSTTCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchhHHHHHhhhcCCCceEEEEC------ChhheeeccC-ceEEE
Confidence 457999999999999999999886 467777777433322223333458999999 3344566787 88877
No 226
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=84.83 E-value=2.7 Score=42.16 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=58.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+++. ...+..+++..+...+...++ ...+|||+| .+....+++.++++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidip~~~~ 314 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT------NVLARGIDIPTVSM 314 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC------GGGSSSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC------ChhhcCCCcccCCE
Confidence 568999999999999999999886 467788888887666554433 358999999 34456678899999
Q ss_pred EEEccch
Q 007085 249 VVLDEAD 255 (618)
Q Consensus 249 vViDEaH 255 (618)
||.-+..
T Consensus 315 Vi~~~~p 321 (395)
T 3pey_A 315 VVNYDLP 321 (395)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 9965544
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.61 E-value=9.5 Score=36.94 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+-+++.+++|+|||+++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 347899999999997543
No 228
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.29 E-value=5.1 Score=43.67 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.++||+|+|+..++.+++.|.+. ++.+..++++.+...+...+. ..++|+||| .+....+++.++++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT------~~l~~GlDip~v~l 510 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI------NLLREGLDIPEVSL 510 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES------CCCCTTCCCTTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc------ChhhcCccCCCCCE
Confidence 568999999999999999999886 467777787777665554432 358999999 23345677889999
Q ss_pred EEEccchhc
Q 007085 249 VVLDEADQM 257 (618)
Q Consensus 249 vViDEaH~~ 257 (618)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 998887653
No 229
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.09 E-value=11 Score=34.76 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=53.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----cccc-CCCCCCc
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~-GlDi~~~ 412 (618)
+.++||.+|+++-+..+++.+.+ .+.+..++++.+..++...+.. ..+|+|+|. .+.. .+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 55799999999999988877754 4678888998887765544432 478999995 2322 3678888
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.+||.-.+.
T Consensus 178 ~~lViDEah 186 (242)
T 3fe2_A 178 TYLVLDEAD 186 (242)
T ss_dssp CEEEETTHH
T ss_pred cEEEEeCHH
Confidence 888875443
No 230
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.04 E-value=2.7 Score=41.62 Aligned_cols=72 Identities=13% Similarity=0.263 Sum_probs=54.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+++. ...+..+++..+...+...++ ...+|||+| +.+ ...+++.++++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~-~~Gid~~~~~~ 309 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVM-SRGIDVNDLNC 309 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTH-HHHCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hcCCCcccCCE
Confidence 567999999999999999999886 467788888877665544332 358999999 222 23467888998
Q ss_pred EEEc
Q 007085 249 VVLD 252 (618)
Q Consensus 249 vViD 252 (618)
||.-
T Consensus 310 Vi~~ 313 (367)
T 1hv8_A 310 VINY 313 (367)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8853
No 231
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.84 E-value=2.9 Score=43.00 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=54.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
++||+|+++..+..+++.+.+. .+.+..++++....++...++ ...+||||| .+....+++.++++||
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT------~v~~rGlDi~~v~~VI 373 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT------SVASRGLDIKNIKHVI 373 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC------GGGTSSCCCTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc------hhhhCCCCcccCCEEE
Confidence 4999999999999999999876 467888888887766655443 358999999 3455677899999988
Q ss_pred E
Q 007085 251 L 251 (618)
Q Consensus 251 i 251 (618)
.
T Consensus 374 ~ 374 (434)
T 2db3_A 374 N 374 (434)
T ss_dssp E
T ss_pred E
Confidence 4
No 232
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.66 E-value=3.6 Score=41.67 Aligned_cols=18 Identities=17% Similarity=-0.153 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
.-++|.++.|+|||..+.
T Consensus 179 ei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCH 196 (400)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEEcCCCCChHHHHH
Confidence 458999999999997554
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.43 E-value=2.5 Score=51.59 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=33.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~ 190 (618)
+..+.++++.+++|+|||..++..+.+.+.+ +.+++|+.- .++.++++
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~---------Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECT-TSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEEc-cccHHHHH
Confidence 3355789999999999998776665555422 667888764 34444454
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.42 E-value=2.5 Score=47.81 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++++.+|+|+|||..+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999744
No 235
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.30 E-value=1.1 Score=47.17 Aligned_cols=52 Identities=10% Similarity=-0.002 Sum_probs=30.1
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
+..+.-++|.+++|+|||..++..+.... . ..+..++++.-- .-..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a-~-------~~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWG-T-------AMGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHT-T-------TSCCCEEEEESS-SCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHH-H-------hcCCcEEEEecc-CCHHHHHHHH
Confidence 33445689999999999975544443332 1 113457777642 3334555544
No 236
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.27 E-value=2.3 Score=51.14 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
.+..++|.+++|+|||..++..++..+.. +.+++++.-.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te 71 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAE 71 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEec
Confidence 35789999999999998766555555432 5568888754
No 237
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.25 E-value=2.7 Score=42.15 Aligned_cols=74 Identities=9% Similarity=0.189 Sum_probs=56.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ...+..++++.+...+...++ ....|||+| ......+++.++++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T------~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT------NLFGRGMDIERVNI 321 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES------CCCSSCBCCTTEEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC------ChhhcCCCcccCCE
Confidence 568999999999999999999876 467788888877665544433 358999999 23345677888999
Q ss_pred EEEccc
Q 007085 249 VVLDEA 254 (618)
Q Consensus 249 vViDEa 254 (618)
||.-+.
T Consensus 322 Vi~~~~ 327 (391)
T 1xti_A 322 AFNYDM 327 (391)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 986443
No 238
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.94 E-value=3.4 Score=41.80 Aligned_cols=71 Identities=10% Similarity=0.225 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. .+.+..++++.+..++...++ ....|||+| .+....+++.++++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T------~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST------DVWARGLDVPQVSL 347 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC------GGGSSSCCCTTEEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC------ChhhCcCCcccCCE
Confidence 348999999999999999999876 467888888887666554433 358999999 33455678889999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 348 Vi~ 350 (410)
T 2j0s_A 348 IIN 350 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 239
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.35 E-value=1.5 Score=43.11 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=17.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPIL 158 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l 158 (618)
+.-++|.+++|+|||..++..+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999986544433
No 240
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.10 E-value=15 Score=34.07 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=50.5
Q ss_pred CcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----cccc-CCCCCCcc
Q 007085 345 GKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLDVPNVD 413 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~-GlDi~~~~ 413 (618)
.++||.+++++-+..+++.+.+ .+.+..++++.+..+....+ ....+|+|+|. .+.. .+++.+++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999998887754 25677788877655443222 34678999996 2222 36777888
Q ss_pred EEEEcCCC
Q 007085 414 LIIHYELP 421 (618)
Q Consensus 414 ~VI~~~~p 421 (618)
+||.-.+.
T Consensus 177 ~lViDEah 184 (253)
T 1wrb_A 177 YIVLDEAD 184 (253)
T ss_dssp EEEEETHH
T ss_pred EEEEeCHH
Confidence 88865443
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.02 E-value=10 Score=38.54 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHH
Q 007085 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
..+++||||=+-++... .....+..+...+.+..-++++.|+-.......+.
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~ 231 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHH
Confidence 46788999966543211 11233334444445555567777765444333333
No 242
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.01 E-value=3.4 Score=41.67 Aligned_cols=71 Identities=7% Similarity=0.113 Sum_probs=54.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ...+..++++.+...+...++ ....|||+| .+....+++.++++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T------~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS------DLLTRGIDIQAVNV 329 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES------SCSSSSCCCTTEEE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc------CccccCCCccCCCE
Confidence 458999999999999999999887 467778888877665544332 357999999 23345677888888
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 330 Vi~ 332 (400)
T 1s2m_A 330 VIN 332 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 243
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=81.51 E-value=2.8 Score=43.12 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=47.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (618)
..++||+||++.-++.+++.+.+. ...+..+++...............+||||| + +....+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~-v~e~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----D-ISEMGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----G-GGGTSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----c-hHHcCcccC-CcEE
Confidence 457999999999999999999887 567777777643322223333568999999 3 344456665 5555
No 244
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.35 E-value=2.6 Score=41.76 Aligned_cols=51 Identities=10% Similarity=-0.050 Sum_probs=28.5
Q ss_pred HHHHHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 129 VLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 129 ~i~~i~~-----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
.++.++. +.-++|.+++|+|||..++..+...... ..-.+.+..++++.-.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECC
Confidence 3555553 3458999999999998554333322110 0000124578887654
No 245
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=81.31 E-value=2.4 Score=46.21 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=48.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh-hcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..++||+||++.-++.+++.|++. .+.+..+++.. .......+ ....+||||| .+....+++. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT------dv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT------DISEMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC------GGGGTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChHH-HHHHHHHHHCCCceEEEEC------chhhcceeeC-CcEEE
Confidence 568999999999999999999876 56777777742 22222223 3458999999 3444566777 88777
No 246
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.02 E-value=4.7 Score=42.55 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=59.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-c-----ccCCCCCCccEE
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----ARGLDVPNVDLI 415 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~-----~~GlDi~~~~~V 415 (618)
....+||++|++.-++...+.|.+ .+.+..+|+..+..++..++..+..+..+|+++|+- + ..-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 456899999999999999888865 478889999999999999999999999999999952 1 111333456666
Q ss_pred EEc
Q 007085 416 IHY 418 (618)
Q Consensus 416 I~~ 418 (618)
|.-
T Consensus 144 ViD 146 (523)
T 1oyw_A 144 AVD 146 (523)
T ss_dssp EES
T ss_pred EEe
Confidence 653
No 247
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.84 E-value=9.2 Score=34.15 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=52.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc---CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccc-cCCCCCCcc
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA-RGLDVPNVD 413 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~-~GlDi~~~~ 413 (618)
...++||.+|++..+..+++.+.+. +.+..++++....+....+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999888653 56778888876554433332 2578999995 222 236777888
Q ss_pred EEEEcCCC
Q 007085 414 LIIHYELP 421 (618)
Q Consensus 414 ~VI~~~~p 421 (618)
+||.-.+.
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 88865443
No 248
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=80.61 E-value=8.5 Score=35.90 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=52.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccc--cCCCCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA--RGLDVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~--~GlDi~~ 411 (618)
..++||.++++.-+..+++.+.+ .+.+..++++....++...+ ....+|+|+|. .+. ..+++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999999888877744 36788889887765543332 24688999995 222 3467788
Q ss_pred ccEEEEcCCC
Q 007085 412 VDLIIHYELP 421 (618)
Q Consensus 412 ~~~VI~~~~p 421 (618)
+++||.-.+.
T Consensus 187 ~~~lViDEah 196 (249)
T 3ber_A 187 LKYLVMDEAD 196 (249)
T ss_dssp CCEEEECSHH
T ss_pred cCEEEEcChh
Confidence 8888875443
No 249
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.54 E-value=19 Score=35.25 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=35.0
Q ss_pred CcceEEEccchhcc-CCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 245 EVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 245 ~~~~vViDEaH~~~-~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
+.+++++|.+-+.- +......+..+...+.++..++++.+|........+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678899887643 223455566666666677788888888776655555544
No 250
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=80.21 E-value=3.5 Score=38.02 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=51.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHh------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----cc-cCCCCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AA-RGLDVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~-~GlDi~~ 411 (618)
..++||.+++++-++.+++.+.+ .+.+..++++.+..++...+ ...+|+|+|.- +. ..+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 46899999999999998887754 35678889988776654433 25789999962 22 2356777
Q ss_pred ccEEEEcCC
Q 007085 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 167 ~~~lViDEa 175 (230)
T 2oxc_A 167 IRLFILDEA 175 (230)
T ss_dssp CCEEEESSH
T ss_pred CCEEEeCCc
Confidence 777776443
No 251
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=81.13 E-value=0.35 Score=42.58 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=49.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++..+..+++.|.+. .+.+..++++.+...+...++ ....|||+| + +....+++.++++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~-~~~~Gid~~~~~~ 101 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----D-VAARGIDIPDVSH 101 (170)
Confidence 457999999999999998888765 456677777766555443332 247899999 2 2233456777777
Q ss_pred EEEc
Q 007085 249 VVLD 252 (618)
Q Consensus 249 vViD 252 (618)
||.-
T Consensus 102 Vi~~ 105 (170)
T 2yjt_D 102 VFNF 105 (170)
Confidence 7753
No 252
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=79.50 E-value=3.3 Score=42.85 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=49.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..++||+||++.-++++++.|.+. .+.+..+++...............+||||| .+....+++.+ ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT------~v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT------DISEMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTTHHHHGGGGGSSCCSEEEEC------GGGGSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHHHHHHHHhhccCCceEEEEC------CHHHhCcCCCC-CEEE
Confidence 347999999999999999999876 466777776554322222223458999999 34455677877 7766
No 253
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=79.33 E-value=5.1 Score=42.96 Aligned_cols=59 Identities=8% Similarity=0.145 Sum_probs=51.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHH--hcCCccEEEEcC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAF--RDGRFNILIATD 401 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f--~~g~~~vLVaT~ 401 (618)
....+||++|++.-++...+.|.+ .+.+..+++.++..++..++..+ ..+..+|||+|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 456899999999999988888865 48899999999999999888888 568899999997
No 254
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.01 E-value=6.2 Score=44.12 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.+..+++.+|+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3467999999999999744
No 255
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.86 E-value=9.1 Score=39.26 Aligned_cols=75 Identities=27% Similarity=0.359 Sum_probs=52.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEc--------CCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcC
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG--------GTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~ 240 (618)
+.++||.|+++..+..+++.+.+. ++.+..+++ +.+..++...++ ..+.|||+| + .-...
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~-~~~~G 432 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----S-VGEEG 432 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----G-GGGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----C-ccccC
Confidence 568999999999999999999886 567777777 444444433322 358999999 2 23445
Q ss_pred CCCCCcceEEEccch
Q 007085 241 LNLSEVQFVVLDEAD 255 (618)
Q Consensus 241 ~~~~~~~~vViDEaH 255 (618)
+++..+++||+-+..
T Consensus 433 ldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 433 LDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGSTTCCEEEESSCC
T ss_pred CCchhCCEEEEeCCC
Confidence 678889988854433
No 256
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.35 E-value=5 Score=41.92 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=28.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.++.+..++..-.. +. ....+..+- -.+.+++.+|+|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~--~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HH--CGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hh--chhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 345677776666666666532100 00 000111110 1245999999999999844
No 257
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=78.11 E-value=1.8 Score=44.52 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
..+++|.++||+|||.. +..++..+..+ +..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~-~~~li~~~~~~--------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL-LRELAYTGLLR--------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHH-HHHHHHHHHHT--------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHHC--------CCcEEEEeCCCchhH
Confidence 46899999999999985 34455554431 557888888877754
No 258
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.34 E-value=12 Score=41.59 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 357999999999999754
No 259
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=77.31 E-value=24 Score=36.73 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=52.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh----hcCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+...+|++.+..-+..+++.+.+.. ..+..+++..+...+...+ ....+|||||+..+.. .+++.++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~--~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY--DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC--SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC--CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 3445555555777777888887754 3677778877765544333 2457999999766543 567899999
Q ss_pred EEEccch
Q 007085 249 VVLDEAD 255 (618)
Q Consensus 249 vViDEaH 255 (618)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9987776
No 260
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.03 E-value=20 Score=37.44 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.1
Q ss_pred CEEEEccCCChhHHHHH
Q 007085 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l 154 (618)
.+++++.+|+|||.++.
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998553
No 261
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.94 E-value=4.3 Score=40.48 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
...++++.+|+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999855
No 262
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=76.87 E-value=6.2 Score=46.28 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=50.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (618)
-+|.|..|||||.+.+--+...+.+ . ....++|+|||.. +.-+..+++.+.++.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~-~-----~~~~~il~lVP~q-~TFt~~~rl~~~l~~------------------- 57 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRR-A-----PFGKPIIFLVPDQ-MTFLMEYELAKTPDM------------------- 57 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHH-C-----TTSSCEEEECCGG-GHHHHHHHHTCCSSC-------------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-C-----CCCCcEEEEecCc-ccHHHHHHHHHhhhh-------------------
Confidence 4789999999998766555544433 1 1246799999975 333344444433211
Q ss_pred hcCCCEEEEChHHHHH-HHHhcCCCCCCcceEEEccch
Q 007085 219 DYGVDAVVGTPGRVID-LIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~-~l~~~~~~~~~~~~vViDEaH 255 (618)
....++-|.|...|.. .+.... .....|+|+..
T Consensus 58 ~~~~~~~V~TFhsla~~il~~~g----~~~~~ild~~~ 91 (1166)
T 3u4q_B 58 GGMIRAQVFSFSRLAWRVLQHTG----GMSRPFLTSTG 91 (1166)
T ss_dssp SEESSEEEECHHHHHHHHHHHHS----CTTSCEECHHH
T ss_pred cceeeeEEecHHHHHHHHHHHcC----CCcccCcCHHH
Confidence 0013678888888854 333321 12345667665
No 263
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=76.86 E-value=8.1 Score=35.66 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=45.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-CCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-LDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~G-lDi~~ 411 (618)
...++||.++++..+..+++.+.+ .+.+..++++....+ ....+..+..+|+|+|. .+..+ +++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999999888854 245666676654332 33455567789999994 33333 66777
Q ss_pred ccEEEEcCC
Q 007085 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 174 ~~~lViDEa 182 (237)
T 3bor_A 174 IKMFVLDEA 182 (237)
T ss_dssp CCEEEEESH
T ss_pred CcEEEECCc
Confidence 888886443
No 264
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.62 E-value=4.9 Score=36.85 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=48.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----cc-ccCCCCCCc
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VA-ARGLDVPNV 412 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~-~~GlDi~~~ 412 (618)
.+.++||.++++.-+..+++.+.+ .+.+..++++.+..++... +. ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999988865 3667778887665443322 22 3478999995 22 234677888
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
++||.-.+.
T Consensus 169 ~~lViDEah 177 (228)
T 3iuy_A 169 TYLVIDEAD 177 (228)
T ss_dssp CEEEECCHH
T ss_pred eEEEEECHH
Confidence 888864443
No 265
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.52 E-value=17 Score=33.20 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=50.3
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----ccc--CCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AAR--GLDVP 410 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~--GlDi~ 410 (618)
.+.++||.+|++.-+..+++.+.+ .+.+..++++.+..+....+ ...+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 456899999999999999888765 25678888887655443322 36789999951 222 36677
Q ss_pred CccEEEEcCCC
Q 007085 411 NVDLIIHYELP 421 (618)
Q Consensus 411 ~~~~VI~~~~p 421 (618)
++++||.-.+.
T Consensus 171 ~~~~lViDEah 181 (236)
T 2pl3_A 171 DLQMLVLDEAD 181 (236)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeChH
Confidence 78888864443
No 266
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=76.17 E-value=7.6 Score=34.71 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHh------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-CCCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-LDVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~G-lDi~~ 411 (618)
..++||.++++.-++.+++.+.+ .+.+..++++.+..+.... + ....+|+|+|. .+..+ +++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45799999999999988887754 3567778888776543222 2 35678999996 22333 56777
Q ss_pred ccEEEEcCC
Q 007085 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 147 ~~~lViDEa 155 (206)
T 1vec_A 147 VQMIVLDEA 155 (206)
T ss_dssp CCEEEEETH
T ss_pred CCEEEEECh
Confidence 888876443
No 267
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.64 E-value=15 Score=35.28 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=14.2
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
.-+++.++.|+|||..+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEEECSSCSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347788999999997554
No 268
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=75.36 E-value=6.3 Score=38.35 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=49.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcc
Q 007085 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (618)
Q Consensus 172 ~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~ 247 (618)
...++||+|+++..+..+++.+. .+..+++..+...+.+.++ ...+|||+| + +....+++.+++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~-~~~~Gid~~~~~ 286 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----D-VASRGLDIPLVE 286 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----H-HHHTTCCCCCBS
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----C-ccccCCCccCCC
Confidence 35679999999988877666554 4566777777665544433 358999999 3 334567888999
Q ss_pred eEEEc
Q 007085 248 FVVLD 252 (618)
Q Consensus 248 ~vViD 252 (618)
+||.-
T Consensus 287 ~Vi~~ 291 (337)
T 2z0m_A 287 KVINF 291 (337)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 98853
No 269
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.94 E-value=6.8 Score=45.27 Aligned_cols=76 Identities=24% Similarity=0.390 Sum_probs=57.0
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cC----CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-cccCC-CCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SY----NCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AARGL-DVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~----~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~~~Gl-Di~~ 411 (618)
.+.++||.+|++.-+..+++.+.+ .+ .+..+||+.+..++.+..+.+.+ .+|+|+|+- +..-+ .+.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 467899999999999998888754 24 67889999999888878887777 899999962 11111 1557
Q ss_pred ccEEEEcCC
Q 007085 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 176 l~~lViDEa 184 (1054)
T 1gku_B 176 FDFIFVDDV 184 (1054)
T ss_dssp CSEEEESCH
T ss_pred CCEEEEeCh
Confidence 778876443
No 270
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.76 E-value=7.9 Score=46.60 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=31.0
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
+-+.|.+|.|||||..++..+.+.-. .+..++++.+-.+|....
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~---------~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTSCCCHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCeEEEEecCCCCCHHH
Confidence 45899999999999877555444322 267789998865665544
No 271
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=74.68 E-value=6.2 Score=42.54 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=48.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..++||+|+++.-++.+++.|.+. .+.+..+++...............+||||| .+....+++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~R~~~l~~F~~g~~~VLVaT------dv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT------DISEMGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTTHHHHTTHHHHSCCSEEEEC------GGGGTTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChHHHHHHHHhhcCCCcEEEEEC------cHHHcCcccC-ceEEE
Confidence 457999999999999999999986 466777776433222222233468999999 3444556674 77775
No 272
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=73.93 E-value=3 Score=37.97 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHH
Q 007085 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~ 152 (618)
+...+.-|..++..+..+.-+.|.+|.|||||+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3444566788899898888899999999999973
No 273
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.66 E-value=3.7 Score=41.83 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhC--CCCEEEEccCCChhHHHHHHHHHHH
Q 007085 124 PIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDK 160 (618)
Q Consensus 124 ~~Q~~~i~~i~~--~~~~li~~~tGsGKT~~~l~~~l~~ 160 (618)
+-+..++..++. +.-++|.+|||||||+. +..++..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~ 190 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQE 190 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhh
Confidence 344555555443 33489999999999973 3444443
No 274
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.39 E-value=11 Score=41.86 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=54.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHh---------CCCCceEEEEcCCchHHHHHHhhc---------CCCEEEEChHHHHH
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHES---------APSLDTICVYGGTPISHQMRALDY---------GVDAVVGTPGRVID 234 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~Ilv~T~~~l~~ 234 (618)
..++||.||++.-+..+++.+.+. ...+.+..++++.+..++...++. ...||||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 568999999999999999888752 245667888888887766554432 35899999 3
Q ss_pred HHHhcCCCCCCcceEEE
Q 007085 235 LIKRNALNLSEVQFVVL 251 (618)
Q Consensus 235 ~l~~~~~~~~~~~~vVi 251 (618)
+....+++.++.+||-
T Consensus 378 -iae~GidIp~v~~VId 393 (773)
T 2xau_A 378 -IAETSLTIDGIVYVVD 393 (773)
T ss_dssp -HHHHTCCCTTEEEEEE
T ss_pred -HHHhCcCcCCeEEEEe
Confidence 3344677888988873
No 275
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=73.27 E-value=0.7 Score=46.18 Aligned_cols=7 Identities=0% Similarity=-0.135 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 007085 457 SIERDVG 463 (618)
Q Consensus 457 ~l~~~l~ 463 (618)
.|.+.++
T Consensus 240 ~il~~y~ 246 (358)
T 2pk2_A 240 EFLQILE 246 (358)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 3334443
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.76 E-value=14 Score=36.48 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=18.6
Q ss_pred HHHHHhC-----CCCEEEEccCCChhHHHHH
Q 007085 129 VLEPAMQ-----GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 129 ~i~~i~~-----~~~~li~~~tGsGKT~~~l 154 (618)
.++.++. +.-+.|.++.|+|||..+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3455553 3458999999999997543
No 277
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.51 E-value=21 Score=33.37 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=51.1
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc-----CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccc--cCCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA--RGLDVP 410 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~--~GlDi~ 410 (618)
.+.++||.+|++.-++.+++.+.+. ..+..++++....+.... +..+ .+|+|+|. .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999999998888652 456677787765544332 3333 78999994 222 246778
Q ss_pred CccEEEEcCC
Q 007085 411 NVDLIIHYEL 420 (618)
Q Consensus 411 ~~~~VI~~~~ 420 (618)
++.+||.-.+
T Consensus 201 ~l~~lViDEa 210 (262)
T 3ly5_A 201 NLQCLVIDEA 210 (262)
T ss_dssp TCCEEEECSH
T ss_pred cCCEEEEcCh
Confidence 8888886443
No 278
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.45 E-value=4.1 Score=37.18 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=45.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----c-ccCCCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-ARGLDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~-~~GlDi~~ 411 (618)
...++||.++++..+..+++.+.+ .+.+..++++.+..++... +. +.+|+|+|.- + ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999988887754 3567778887665443322 22 3789999952 1 23466777
Q ss_pred ccEEEEcCC
Q 007085 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 156 ~~~iViDEa 164 (224)
T 1qde_A 156 IKMFILDEA 164 (224)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEcCh
Confidence 888886444
No 279
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=72.27 E-value=10 Score=41.75 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=53.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC----------------------------------CceEEEEcCCchHHHHHHh
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPS----------------------------------LDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~ 218 (618)
+.++||.||++.-+..+++.+.+.+.. ..+..++++.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 568999999999999999998875432 2467778887766654433
Q ss_pred h----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 219 D----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 219 ~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
+ ....||||| ......+++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT------~~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVAT------PTLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEEC------GGGGGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEEC------hHHhcccCCCceEEEEe
Confidence 3 358999999 33445677888877663
No 280
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=71.88 E-value=18 Score=37.25 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHHhCCCCEEEEccCCChhHHHH
Q 007085 131 EPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..+.+++.+++.++.|+|||..+
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHH
Confidence 34456888999999999999744
No 281
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.32 E-value=5.8 Score=35.87 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCC----CCEEEEccCCChhHHHHHHHHHHH
Q 007085 108 QDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDK 160 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~l~~~l~~ 160 (618)
..+.+.|+-.++. +... ...+..++++ ..+++.+|+|+|||..+ .+++..
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 4566666655544 3333 3444444433 35899999999999754 444443
No 282
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=71.32 E-value=5 Score=43.44 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=49.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..++||+|+++.-++++++.|++. .+.+..++++.+.... .+.+.+|||+| +.+.+ .+++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaer-GIDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMT-GYTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHH-HCCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHc-cCCCC-CcEEE
Confidence 568999999999999999999875 5778888888776542 23446999999 34443 34564 88877
No 283
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=71.17 E-value=15 Score=38.66 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=62.2
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+..+.-++|.+++|+|||..+. .++..+.. .+.+++++++... ..|+...+..+. + ...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~-~l~g~~~~--------~G~~vi~~~~ee~-~~~l~~~~~~~g--~---------~~~ 336 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVS-RFVENACA--------NKERAILFAYEES-RAQLLRNAYSWG--M---------DFE 336 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHH-HHHHHHHT--------TTCCEEEEESSSC-HHHHHHHHHTTS--C---------CHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH-HHHHHHHh--------CCCCEEEEEEeCC-HHHHHHHHHHcC--C---------CHH
Confidence 3445668999999999997443 23222211 1345677765432 234544443321 1 111
Q ss_pred HHHHHhhcC-CCEEE-----EChHHHHHHHHhcCCCCCCcceEEEccchhccCCC-----cHHHHHHHHHHCCC-CCcEE
Q 007085 213 HQMRALDYG-VDAVV-----GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILERLPQ-NRQSM 280 (618)
Q Consensus 213 ~~~~~~~~~-~~Ilv-----~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~-----~~~~~~~il~~l~~-~~~~l 280 (618)
. ....+ ..++- -+.+...+.+....+ ..+.++||+| -=.-++.. ....+..++..+.. ..-+|
T Consensus 337 ~---~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvi 411 (525)
T 1tf7_A 337 E---MERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 411 (525)
T ss_dssp H---HHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred H---HHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEE
Confidence 1 11111 01110 133444443333222 4567899999 55555554 45555566655543 34455
Q ss_pred EEEeeC
Q 007085 281 MFSATM 286 (618)
Q Consensus 281 ~lSAT~ 286 (618)
+.|-..
T Consensus 412 lvsh~~ 417 (525)
T 1tf7_A 412 FTNTSD 417 (525)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 555443
No 284
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=70.94 E-value=7.3 Score=38.95 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999855
No 285
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.80 E-value=2.6 Score=49.97 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.6
Q ss_pred hCCCCEEEEccCCChhHH
Q 007085 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (618)
..++.+-|+++||||||.
T Consensus 1103 ~~Ge~vaIVG~SGsGKST 1120 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKST 1120 (1321)
T ss_dssp CTTCEEEEECSTTSSTTS
T ss_pred CCCCEEEEECCCCChHHH
Confidence 356779999999999997
No 286
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=69.73 E-value=3.1 Score=42.08 Aligned_cols=71 Identities=10% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. .+.+..+++..+...+...++ ...+|||+|. +....+++.++++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v~~ 351 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQVSL 351 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGCSC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCCCE
Confidence 457999999999999999999875 467788888877665544433 3478999992 3334566778888
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 352 Vi~ 354 (414)
T 3eiq_A 352 VIN 354 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 287
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.69 E-value=4.4 Score=40.95 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=27.4
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 184 (618)
.+.+++|.++||+|||...-. ++..+.. .+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~--------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM--------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH--------CCCEEEEEeCCcC
Confidence 456899999999999974433 3333222 2567888877654
No 288
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.54 E-value=1.6 Score=41.76 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=28.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHH-HHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++++.|+..-. .|+. .+++..+- -.+.+++.+|+|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 44567788777777777764321 2322 23333322 1244999999999999743
No 289
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.53 E-value=5 Score=36.88 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.2
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
++++.++.|+|||..++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999987655444433
No 290
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=67.70 E-value=11 Score=36.20 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 291
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=67.30 E-value=4.3 Score=38.31 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.5
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (618)
.....+++.+++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34578999999999999744
No 292
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=66.87 E-value=3.9 Score=37.26 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=47.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHh---------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----cccc-CCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK---------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLD 408 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~-GlD 408 (618)
..++||.++++.-++.+++.+.+ .+.+..++++.+..+.. +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 45899999999999888887643 35666778776543321 111 24578999995 2233 356
Q ss_pred CCCccEEEEcCC
Q 007085 409 VPNVDLIIHYEL 420 (618)
Q Consensus 409 i~~~~~VI~~~~ 420 (618)
+..+++||.-.+
T Consensus 148 ~~~~~~lViDEa 159 (219)
T 1q0u_A 148 VHTAHILVVDEA 159 (219)
T ss_dssp GGGCCEEEECSH
T ss_pred cCcceEEEEcCc
Confidence 677787776443
No 293
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.76 E-value=10 Score=35.85 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCCChHHH-HHHHHHHhCCC-----CEEEEccCCChhHHHH
Q 007085 108 QDIVAALARRGISKLFPIQ-KAVLEPAMQGR-----DMIGRARTGTGKTLAF 153 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q-~~~i~~i~~~~-----~~li~~~tGsGKT~~~ 153 (618)
..+.+.|+..++. |.+ ..++..+++++ .+++.+|+|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3577888877776 444 23344555442 3999999999999855
No 294
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=66.61 E-value=9.7 Score=33.96 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=20.5
Q ss_pred CCEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 222 ~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
.+++-+.++.+...+..- ..++++||||=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCCC
Confidence 456666666676666542 24588999986554
No 295
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=66.53 E-value=6.3 Score=42.20 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=27.4
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~l 282 (618)
+.+-+++++||.-.-+|......+.+.+..+..+..+|+.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 535 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4567889999998877776667777777766544433333
No 296
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=66.25 E-value=7.9 Score=40.57 Aligned_cols=38 Identities=24% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHcCCCCChHHHHHHHH-HHhCCCCEEEEccCCChhHHH
Q 007085 113 ALARRGISKLFPIQKAVLE-PAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 113 ~l~~~~~~~l~~~Q~~~i~-~i~~~~~~li~~~tGsGKT~~ 152 (618)
.|.+.+. +++.+..-+. .+..+..++|.+|||||||+.
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3444443 3344444443 355778899999999999973
No 297
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.13 E-value=13 Score=37.06 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=51.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----cc-cCCCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AA-RGLDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~-~GlDi~~ 411 (618)
...++||.||++.-+..+++.+.+ .+.+..++++....+....+. ..+|+|+|.- +. ..+++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999999988887754 367788899887766554443 4679999942 22 2355667
Q ss_pred ccEEEEcCC
Q 007085 412 VDLIIHYEL 420 (618)
Q Consensus 412 ~~~VI~~~~ 420 (618)
+++||.-.+
T Consensus 163 ~~~vIiDEa 171 (394)
T 1fuu_A 163 IKMFILDEA 171 (394)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEECh
Confidence 888876443
No 298
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=65.94 E-value=4.3 Score=42.05 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=45.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..++||.||++.-++.+++.+.+. .+.+..+++...............+||||| + +....+++.+ ++||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT-----~-v~~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRKSYDTEYPKCKNGDWDFVITT-----D-ISEMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTTCCCCCGGGSSSCCCSEEEES-----S-CC---CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHHHHHHHHhhccCCCceEEEEC-----C-hHHhCeecCC-CEEE
Confidence 457999999999999999999886 466777766432211111222358999999 3 3334566777 6666
No 299
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=65.79 E-value=15 Score=38.54 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-C-CCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-L-DVPN 411 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~G-l-Di~~ 411 (618)
..++||.||++.-+..+++.+.+ .+.+..+||+.+..++...+. ...+|+|+|. .+..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999999888887754 578889999886555432222 1367999995 22233 4 6777
Q ss_pred ccEEEEcCCC
Q 007085 412 VDLIIHYELP 421 (618)
Q Consensus 412 ~~~VI~~~~p 421 (618)
+++||.-.+.
T Consensus 131 ~~~vViDEah 140 (556)
T 4a2p_A 131 FTLMIFDECH 140 (556)
T ss_dssp CSEEEEETGG
T ss_pred CCEEEEECCc
Confidence 8888865443
No 300
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=65.18 E-value=7.1 Score=40.78 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..-..++..+..+.++++.+|+|+|||..+
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333445556667889999999999999744
No 301
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=62.87 E-value=23 Score=37.67 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhC-----CCCEEEEccCCChhHHHHH
Q 007085 123 FPIQKAVLEPAMQ-----GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 123 ~~~Q~~~i~~i~~-----~~~~li~~~tGsGKT~~~l 154 (618)
+.-..+.+...+. .+-++|.|+.|.|||..+.
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~ 165 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAA 165 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHH
Confidence 3444444444442 2348999999999998553
No 302
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.87 E-value=3.9 Score=40.14 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.3
Q ss_pred HHHhCCCCEEEEccCCChhHHHH
Q 007085 131 EPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..+..+.++++.+|+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34445689999999999999744
No 303
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=62.59 E-value=19 Score=39.16 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=54.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHH---HHHHhh---cCCCEEEEChHHHHHHHHhcCCCCCCcceE
Q 007085 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH---QMRALD---YGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~v 249 (618)
.+|+|+++.-++++++.+.+. .+.+..++++.+... ..+.+. ...+||||| .+....+++ ++++|
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT------di~e~GlDi-~v~~V 393 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT------DAIGMGLNL-SIRRI 393 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC------GGGGSSCCC-CBSEE
T ss_pred CEEEEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC------cHHHCCcCc-CccEE
Confidence 466788899999999999885 578889999988764 333444 347999999 344566778 89999
Q ss_pred EEccchhc
Q 007085 250 VLDEADQM 257 (618)
Q Consensus 250 ViDEaH~~ 257 (618)
|+-...++
T Consensus 394 I~~~~~k~ 401 (677)
T 3rc3_A 394 IFYSLIKP 401 (677)
T ss_dssp EESCSBC-
T ss_pred EECCcccc
Confidence 98777654
No 304
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=62.26 E-value=4.4 Score=37.67 Aligned_cols=75 Identities=17% Similarity=0.390 Sum_probs=48.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----cccc---CCCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR---GLDVP 410 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~---GlDi~ 410 (618)
+.++||.+|++.-+..+++.+.+ .+.+..++++..... ..........+|+|+|. .+.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45799999999999999988865 245555665432211 11222345678999994 2222 47788
Q ss_pred CccEEEEcCCC
Q 007085 411 NVDLIIHYELP 421 (618)
Q Consensus 411 ~~~~VI~~~~p 421 (618)
++.+||.-.+.
T Consensus 175 ~~~~lViDEah 185 (245)
T 3dkp_A 175 SVEWLVVDESD 185 (245)
T ss_dssp TCCEEEESSHH
T ss_pred cCcEEEEeChH
Confidence 88888875443
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=62.03 E-value=4.6 Score=36.20 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=16.0
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.++.+++.+++|||||.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999854
No 306
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=61.80 E-value=14 Score=41.31 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=37.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC--CCCceE--------EEEcCCchHHHHHHh---h--cCCCEEEEChHHHHHHHH
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESA--PSLDTI--------CVYGGTPISHQMRAL---D--YGVDAVVGTPGRVIDLIK 237 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~~--------~~~~~~~~~~~~~~~---~--~~~~Ilv~T~~~l~~~l~ 237 (618)
+.++||.|+++..+..+.+.+.+.. ..+++. .++++.+...+...+ . ..++||||| + +.
T Consensus 631 ~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT-----~-~~ 704 (797)
T 4a2q_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----S-VA 704 (797)
T ss_dssp SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEE-----C-C-
T ss_pred CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEc-----C-ch
Confidence 5689999999999999999998731 123322 233444444333322 2 347999999 2 33
Q ss_pred hcCCCCCCcceEEE
Q 007085 238 RNALNLSEVQFVVL 251 (618)
Q Consensus 238 ~~~~~~~~~~~vVi 251 (618)
...+++.++++||.
T Consensus 705 ~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 705 DEGIDIVQCNLVVL 718 (797)
T ss_dssp ------CCCSEEEE
T ss_pred hcCCCchhCCEEEE
Confidence 44567888998884
No 307
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=61.64 E-value=41 Score=31.68 Aligned_cols=92 Identities=12% Similarity=0.204 Sum_probs=59.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh---c
Q 007085 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y 220 (618)
Q Consensus 144 ~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 220 (618)
..-++|.. ++.-++..+.. .+.++||.+.++..+..+.+.+.+.. ++.+..++|..+...+...++ .
T Consensus 92 ~~~s~K~~-~L~~ll~~~~~--------~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 92 VRRSGKMI-RTMEIIEEALD--------EGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp STTCHHHH-HHHHHHHHHHH--------TTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred cccCHHHH-HHHHHHHHHHh--------CCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcC
Confidence 34678875 44455544432 15689999999999998888887632 356677888887666554433 2
Q ss_pred --CCC-EEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 221 --GVD-AVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 221 --~~~-Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
.+. +|++| ..-...+++...+.||+
T Consensus 162 ~~~~~v~L~st------~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 162 NPSVKFIVLSV------KAGGFGINLTSANRVIH 189 (271)
T ss_dssp CTTCCEEEEEC------CTTCCCCCCTTCSEEEE
T ss_pred CCCCCEEEEeh------hhhcCCcCcccCCEEEE
Confidence 345 56676 22334567777887774
No 308
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=61.45 E-value=4.7 Score=39.08 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
...+++|.+++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999854
No 309
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.81 E-value=5.9 Score=39.32 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=21.0
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 45667788877 778999999999865
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=60.73 E-value=4.8 Score=35.30 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=16.6
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (618)
...+.+++.+++|||||.++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 34567999999999999854
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=60.17 E-value=4.4 Score=37.92 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=30.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhC--CCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~--~~~~li~~~tGsGKT~~~ 153 (618)
+..+|+++.-.++....++..... . ....++..+-- .+.+++.+|+|+|||..+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 445677776666666666542110 0 01123333211 245999999999999743
No 312
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=59.80 E-value=1.9 Score=45.00 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+||++.-+..+++.+.+. ...+..++++.+...+...++ ...+||||| + +....+++.++++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~-~~~~GlDip~v~~ 404 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----N-VCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----c-ccccCCccccCCE
Confidence 457999999999999999888775 356677777766555443332 347899999 2 3344567888888
Q ss_pred EE
Q 007085 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 405 VI 406 (479)
T 3fmp_B 405 VI 406 (479)
T ss_dssp --
T ss_pred EE
Confidence 87
No 313
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=59.55 E-value=19 Score=37.71 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=43.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC--CCCceEEEE--------cCCchHHHHHH---hh--cCCCEEEEChHHHHHHHH
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVY--------GGTPISHQMRA---LD--YGVDAVVGTPGRVIDLIK 237 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~--~~~~~~~~~--------~~~~~~~~~~~---~~--~~~~Ilv~T~~~l~~~l~ 237 (618)
..++||.|+++..+..+++.|.+.. ..+.+..++ ++.+..++... +. ...+||||| .+.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT------~~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIAT------SVA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEEC------CCT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEc------chh
Confidence 4689999999999999999998742 123333333 34443333322 22 347999999 234
Q ss_pred hcCCCCCCcceEEE
Q 007085 238 RNALNLSEVQFVVL 251 (618)
Q Consensus 238 ~~~~~~~~~~~vVi 251 (618)
...+++.++++||.
T Consensus 463 ~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 DEGIDIAECNLVIL 476 (555)
T ss_dssp TCCEETTSCSEEEE
T ss_pred hcCCccccCCEEEE
Confidence 45677888888884
No 314
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=59.54 E-value=5.4 Score=43.79 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHh--C--CCCceEEEEcC--------CchHHHHHHhh----cCCCEEEEChHHHHHHH
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHES--A--PSLDTICVYGG--------TPISHQMRALD----YGVDAVVGTPGRVIDLI 236 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~--~--~~~~~~~~~~~--------~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l 236 (618)
..++||.|+++..+..+++.|.+. + .++.+..+++. .+...+...+. ...+|||+| .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT------~~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT------TV 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE------CS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc------cc
Confidence 568999999999999999999875 1 14667777877 66655554443 357999999 34
Q ss_pred HhcCCCCCCcceEE
Q 007085 237 KRNALNLSEVQFVV 250 (618)
Q Consensus 237 ~~~~~~~~~~~~vV 250 (618)
....+++.++++||
T Consensus 474 ~~~GIDip~v~~VI 487 (699)
T 4gl2_A 474 AEEGLDIKECNIVI 487 (699)
T ss_dssp CCTTSCCCSCCCCE
T ss_pred cccCCccccCCEEE
Confidence 45567888999888
No 315
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=59.48 E-value=4.3 Score=35.45 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+-+++.+++|||||.++
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 316
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=59.30 E-value=4.9 Score=39.43 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.++|.+|||+|||..+
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999855
No 317
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.98 E-value=14 Score=35.55 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=46.8
Q ss_pred CcEEEEecchhHHHHHHHHHHh------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----c-c-cCCCCCC
Q 007085 345 GKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-A-RGLDVPN 411 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~-~-~GlDi~~ 411 (618)
.++||.+|+++-+..+++.+.+ .+.+..++++....... ....+|||+|.- + . ..+++.+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 3799999999999998877654 24555666554432211 345789999962 2 2 3477888
Q ss_pred ccEEEEcCCC
Q 007085 412 VDLIIHYELP 421 (618)
Q Consensus 412 ~~~VI~~~~p 421 (618)
+.+||.-.+.
T Consensus 236 l~~lVlDEad 245 (300)
T 3fmo_B 236 IKVFVLDEAD 245 (300)
T ss_dssp CSEEEETTHH
T ss_pred ceEEEEeCHH
Confidence 8888875543
No 318
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=58.25 E-value=6.4 Score=39.26 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.5
Q ss_pred HHhCCCCEEEEccCCChhHH
Q 007085 132 PAMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~ 151 (618)
.+..+..++|.++||||||.
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 45577899999999999997
No 319
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=57.80 E-value=5.6 Score=34.94 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l 154 (618)
.+.+++.+++|||||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3568999999999998553
No 320
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=57.72 E-value=5.8 Score=35.66 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++-++|.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345899999999999744
No 321
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=57.72 E-value=7.4 Score=38.04 Aligned_cols=26 Identities=19% Similarity=0.486 Sum_probs=20.5
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 44566778877 778999999999865
No 322
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.47 E-value=5 Score=37.93 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.3
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~ 152 (618)
+..+.-++|.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44566799999999999973
No 323
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=57.29 E-value=6.1 Score=39.26 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=18.1
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
.+..++|.+|||||||.. +-.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 344689999999999973 34444443
No 324
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=57.24 E-value=14 Score=40.50 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC----------------------------CceEEEEcCCchHHHHHHhh----c
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPS----------------------------LDTICVYGGTPISHQMRALD----Y 220 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~----~ 220 (618)
+.++||.||++.-+..+++.+.+.+.. ..+..++++.+..++....+ .
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 567999999999999988888754211 24666788877766544333 3
Q ss_pred CCCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 221 ~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
..+||||| ......+++..+.+||-
T Consensus 322 ~~~vlvaT------~~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVAT------PTLAAGVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEEC------STTTSSSCCCBSEEEEC
T ss_pred CCeEEEEC------cHHhccCCCCceEEEEc
Confidence 58999999 23445677888877653
No 325
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=57.07 E-value=10 Score=37.99 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHh---CCCCEEEEccCCChhHHHH
Q 007085 122 LFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 122 l~~~Q~~~i~~i~---~~~~~li~~~tGsGKT~~~ 153 (618)
+-..=.++|+.++ +++.+.|.+++|+|||..+
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3344456676654 5788999999999999744
No 326
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.90 E-value=4.3 Score=48.17 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lS 283 (618)
+++-+++|+||+-.-+|......+.+.+..+.+++.+|+.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 56788999999998888777777777777665454444433
No 327
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=56.84 E-value=4.7 Score=34.81 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-+++.+++|||||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 328
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=56.52 E-value=6.5 Score=34.53 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=14.9
Q ss_pred CCCCEEEEccCCChhHHH
Q 007085 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~ 152 (618)
.++-++|.+|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345689999999999973
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.50 E-value=5.3 Score=35.29 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.8
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.++.+++.+++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 330
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=56.00 E-value=7.2 Score=38.56 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=20.5
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..++||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34566777876 677999999999875
No 331
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=55.79 E-value=7.9 Score=38.24 Aligned_cols=26 Identities=23% Similarity=0.624 Sum_probs=21.4
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 36777888877 677899999999876
No 332
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=55.79 E-value=7.2 Score=38.64 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=21.1
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45667788877 677899999999875
No 333
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=55.68 E-value=7.8 Score=38.31 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=21.6
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36778888877 677899999999876
No 334
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=55.65 E-value=7.8 Score=39.13 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=20.5
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~l 154 (618)
..++.++.+.| ++..+.||||||.+..
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 34556677766 6778999999998753
No 335
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=55.51 E-value=7.5 Score=38.74 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=20.6
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 45666778877 677899999999865
No 336
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=55.49 E-value=18 Score=39.66 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=49.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC-------------------------------CceEEEEcCCchHHHHHHhh--
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPS-------------------------------LDTICVYGGTPISHQMRALD-- 219 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~-- 219 (618)
+.++||.||++.-+..+++.+.+.... ..+..++++.+...+....+
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 467999999999999998888764211 23677788777666543332
Q ss_pred --cCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 220 --YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 220 --~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
...+||||| ......+++..+.+||
T Consensus 317 ~~g~~~vlvaT------~~l~~Gvdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVAT------PTLSAGINTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEEC------STTGGGCCCCBSEEEE
T ss_pred HCCCCeEEEEC------cHhhccCCCCceEEEE
Confidence 357999999 2334456777777654
No 337
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.36 E-value=5.4 Score=35.18 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++.+++.+++|||||+++
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 338
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=55.31 E-value=8.3 Score=38.22 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=20.7
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.+++.++.+.| ++..+.||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45667778877 677899999999865
No 339
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=55.29 E-value=8.5 Score=37.99 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEee
Confidence 34566777877 677899999999865
No 340
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=55.17 E-value=8.4 Score=38.39 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34566777877 677899999999865
No 341
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=55.14 E-value=8.6 Score=37.99 Aligned_cols=26 Identities=23% Similarity=0.588 Sum_probs=20.1
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34556677776 678999999999875
No 342
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=55.13 E-value=8.6 Score=37.65 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=21.1
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..+..++.+.| ++..++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 46677788877 677999999999865
No 343
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.99 E-value=5.7 Score=37.81 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=31.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (618)
+...|+++.-.+++++.++..... . -...++..+- -.+.+++.+|+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456677777777777666542110 0 0112333221 1235999999999999743
No 344
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=54.90 E-value=11 Score=40.24 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=49.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC------CceEEEEcCCch--HHHHHHhhc-CCC---EEEEChHHHHHHHHhcC
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPS------LDTICVYGGTPI--SHQMRALDY-GVD---AVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~------~~~~~~~~~~~~--~~~~~~~~~-~~~---Ilv~T~~~l~~~l~~~~ 240 (618)
..++||+|+++.-+..+++.|.+..+. ..+..+++..+. ....+.+.. ..+ |+||| .+....
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt------~~l~~G 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS------QLLTTG 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES------STTTTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC------ChhhcC
Confidence 568999999999999999999876532 124445555442 111222322 223 77777 334456
Q ss_pred CCCCCcceEEEccch
Q 007085 241 LNLSEVQFVVLDEAD 255 (618)
Q Consensus 241 ~~~~~~~~vViDEaH 255 (618)
+++.++++||++..-
T Consensus 513 iDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 513 VDAPTCKNVVLARVV 527 (590)
T ss_dssp CCCTTEEEEEEESCC
T ss_pred ccchheeEEEEEecC
Confidence 788999999986553
No 345
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=54.84 E-value=6.5 Score=36.87 Aligned_cols=16 Identities=25% Similarity=-0.037 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.+++|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999854
No 346
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=54.80 E-value=8.7 Score=38.07 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34556777877 677999999999865
No 347
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=54.76 E-value=6 Score=38.40 Aligned_cols=16 Identities=25% Similarity=0.021 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.+|||+|||..+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4788999999999754
No 348
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=54.66 E-value=7.4 Score=38.38 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=19.5
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++.+.| ++..+.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4556667766 678899999999865
No 349
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=54.60 E-value=7.1 Score=38.79 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=20.7
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 45667778877 678999999999865
No 350
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=54.53 E-value=8.8 Score=38.05 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=19.9
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++.+.| ++..+.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4556777877 678899999999865
No 351
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=54.50 E-value=2.9 Score=39.55 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999854
No 352
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.12 E-value=9.4 Score=38.58 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=21.2
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++.|.| ++..+.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 6778888877 677899999999876
No 353
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=54.06 E-value=9.1 Score=38.06 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34556777877 677999999999865
No 354
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=53.95 E-value=6.9 Score=37.89 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.+|||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999754
No 355
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=53.83 E-value=8.2 Score=34.71 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.4
Q ss_pred CEEEEccCCChhHHHHH
Q 007085 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l 154 (618)
-.++.+++|||||+.++
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 47899999999998653
No 356
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=53.19 E-value=5.8 Score=35.03 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=15.6
Q ss_pred hCCCCEEEEccCCChhHHH
Q 007085 134 MQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~ 152 (618)
..+..++|.+++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3456689999999999984
No 357
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.61 E-value=15 Score=41.71 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=40.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHh--CCCCceEEE--------EcCCchHHHHHHh---h--cCCCEEEEChHHHHHHHH
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHES--APSLDTICV--------YGGTPISHQMRAL---D--YGVDAVVGTPGRVIDLIK 237 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~--~~~~~~~~~--------~~~~~~~~~~~~~---~--~~~~Ilv~T~~~l~~~l~ 237 (618)
+.++||.|+++..+..+.+.|.+. ++.+++..+ +++.+...+.+.+ . ..++|||+| .+.
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT------~~~ 704 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT------SVA 704 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEE------CC-
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEe------Cch
Confidence 578999999999999999999875 222333333 3444444443332 2 347999999 234
Q ss_pred hcCCCCCCcceEEEc
Q 007085 238 RNALNLSEVQFVVLD 252 (618)
Q Consensus 238 ~~~~~~~~~~~vViD 252 (618)
...+++.++++||.=
T Consensus 705 ~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 705 DEGIDIVQCNLVVLY 719 (936)
T ss_dssp -----CCCCSEEEEE
T ss_pred hcCCcchhCCEEEEe
Confidence 456778999999853
No 358
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.58 E-value=6.2 Score=38.78 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.7
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007085 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (618)
+..+..++|.++||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4467889999999999997
No 359
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=52.53 E-value=7.4 Score=38.86 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=20.0
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.| ++..+.||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 44556677776 678999999999865
No 360
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=52.42 E-value=8.1 Score=34.67 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.7
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (618)
+..++-+++++++|||||..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345567999999999999843
No 361
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=52.32 E-value=15 Score=37.93 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+++|+.+|+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999855
No 362
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=52.31 E-value=6.2 Score=34.03 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.++.|||||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 363
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=52.24 E-value=9.2 Score=38.29 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=20.7
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~l 154 (618)
..++.++.+.| ++..+.||||||.+..
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 34556777776 6788999999998753
No 364
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=52.18 E-value=9.6 Score=32.91 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++.++|.+++|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356899999999999843
No 365
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=52.16 E-value=8.9 Score=39.24 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=20.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.|.| ++..+.||||||.+.
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34556677877 677899999999875
No 366
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=52.15 E-value=36 Score=37.64 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=41.1
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~ 401 (618)
.+.+++|.|+|+.-|...++.+.. .+.+.++.|+++..+|.... .++|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 466899999999999888776643 47888899999876654433 378999996
No 367
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=52.13 E-value=8.2 Score=34.50 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.1
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (618)
..+.-++|.+++|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567899999999999743
No 368
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=51.88 E-value=8.8 Score=34.34 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.2
Q ss_pred CCCCEEEEccCCChhHHH
Q 007085 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~ 152 (618)
.++-+.|.+|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999973
No 369
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=51.53 E-value=13 Score=42.41 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=57.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh---c-C--CCEEEEChHHHHHHHHhcCCCCCCc
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-G--VDAVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--~~Ilv~T~~~l~~~l~~~~~~~~~~ 246 (618)
+.++||+|+++..+..+.+.+.+.. ++.+..++++.+...+...+. . . ++|||+| .+-...+++.++
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT------~v~~~GlDl~~~ 575 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS------EIGSEGRNFQFA 575 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS------CCTTCSSCCTTC
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec------chhhcCCCcccC
Confidence 5689999999999999999998543 577888898877665544432 3 3 8999999 233456789999
Q ss_pred ceEEEccch
Q 007085 247 QFVVLDEAD 255 (618)
Q Consensus 247 ~~vViDEaH 255 (618)
++||+-+..
T Consensus 576 ~~VI~~d~p 584 (968)
T 3dmq_A 576 SHMVMFDLP 584 (968)
T ss_dssp CEEECSSCC
T ss_pred cEEEEecCC
Confidence 999976655
No 370
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=51.15 E-value=9 Score=34.58 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
+.-++|.+|+|+|||..+
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 455889999999999843
No 371
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=51.01 E-value=12 Score=39.06 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=18.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
..+++|.+.||||||.+ +..++..+
T Consensus 167 ~pHlLIaG~TGSGKSt~-L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG-VNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHH
Confidence 46899999999999974 44444333
No 372
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=50.86 E-value=8.8 Score=34.25 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.1
Q ss_pred CCCCEEEEccCCChhHHH
Q 007085 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~ 152 (618)
.+.-+.|.+|+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 455688999999999974
No 373
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=50.46 E-value=11 Score=35.22 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=17.1
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (618)
+.+..++|.+++|||||.++
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34789999999999999854
No 374
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=50.40 E-value=7 Score=33.98 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-+++.+++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 375
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=49.94 E-value=10 Score=34.17 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.++.++.. ..+..++.+++.+++|||||..+
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34555554 33455667899999999999754
No 376
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=49.81 E-value=13 Score=39.31 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
.+++|.+.||||||.+ +..++..++... .....+++++=|.
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl~~~----sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSILFKS----TPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHHTTC----CTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHHHhC----CCcceEEEEeCCC
Confidence 5799999999999974 445444444311 0113455666565
No 377
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=49.80 E-value=8.6 Score=37.49 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.+|||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999855
No 378
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=49.61 E-value=14 Score=33.15 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCcEEEEecchhHHHH-HHHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-----ccc-------C
Q 007085 344 GGKCIVFTQTKRDADR-LAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----AAR-------G 406 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~-l~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-----~~~-------G 406 (618)
..++||+|+++..++. +.+.+.+ .+.+..++++.....+...+. ...+|+|+|.- +.. .
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5689999999988777 5554433 467778887754333221111 14679999852 122 2
Q ss_pred CCCCCccEEEEcCCC
Q 007085 407 LDVPNVDLIIHYELP 421 (618)
Q Consensus 407 lDi~~~~~VI~~~~p 421 (618)
+.+.++++||.-.+.
T Consensus 158 ~~~~~~~~iIiDEah 172 (216)
T 3b6e_A 158 VQLSDFSLIIIDECH 172 (216)
T ss_dssp CCGGGCSEEEETTC-
T ss_pred cchhcccEEEEECch
Confidence 455667777764443
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.59 E-value=9.3 Score=32.88 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
++++|.+..|||||.++
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999865
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.50 E-value=18 Score=34.84 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.1
Q ss_pred CCCEEEEccCCChhHHH
Q 007085 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (618)
+.-+.+.+|+|+|||+.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 34588899999999973
No 381
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.47 E-value=7.1 Score=34.28 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++.+++.+++|||||+++
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446899999999999854
No 382
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=49.35 E-value=8.3 Score=38.62 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=18.6
Q ss_pred HHHHhCCCC--EEEEccCCChhHHHH
Q 007085 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
++.++.+.| ++..+.||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345667766 677999999999875
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=49.31 E-value=7.3 Score=35.26 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.+++|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999855
No 384
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=49.25 E-value=9.7 Score=37.91 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=20.5
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++.+.| ++..+.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667778877 677899999999875
No 385
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=49.12 E-value=9.5 Score=34.51 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+.+++.+|+||||++.+-
T Consensus 1 M~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 357899999999998653
No 386
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.10 E-value=12 Score=37.88 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=21.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.|.| ++..+.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46777888877 677899999999875
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=48.65 E-value=7.6 Score=35.17 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.++.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999855
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.64 E-value=7.4 Score=34.75 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.++.+++.++.|||||+++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999854
No 389
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=48.46 E-value=12 Score=37.43 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=20.7
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++.+.| ++..+.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 6677788877 677899999999865
No 390
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=48.39 E-value=9.5 Score=33.69 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=16.3
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (618)
.....+++.+++|||||.++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999854
No 391
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=47.84 E-value=25 Score=41.18 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=40.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhh---cCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~---~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+|.|..|||||.+...-++..+...... ...-...++|+|+=|+.-|.+..+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 469999999999987766666665431100 00112347999999999998888887654
No 392
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=47.59 E-value=4.3 Score=42.68 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH---HHh-hcCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM---RAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||+|+++..+..+++.+.+. ...+.+++++.....+. +.+ ....+|||+|. +....+++.++++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~------~l~~GiDip~v~~ 428 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------VIARGIDVSQVNL 428 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTCCE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC------hhhcCCCccCCCE
Confidence 467999999999999998888764 45667777765543322 222 34578999993 3345677889999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 429 VI~ 431 (508)
T 3fho_A 429 VVN 431 (508)
T ss_dssp EEC
T ss_pred EEE
Confidence 884
No 393
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=47.42 E-value=54 Score=36.31 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=49.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-c-----c-------
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----A------- 404 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~-----~------- 404 (618)
.+..++|.|++..-|...++.+.. .+.+.++.++++..+|.... .++|+|+|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 466899999999999888776643 47888899999887665442 3789999961 1 1
Q ss_pred cCCCCCCccEEEE
Q 007085 405 RGLDVPNVDLIIH 417 (618)
Q Consensus 405 ~GlDi~~~~~VI~ 417 (618)
.-+++..+.++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1255667777664
No 394
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.29 E-value=8.3 Score=38.56 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.7
Q ss_pred hCCCCEEEEccCCChhHHH
Q 007085 134 MQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~ 152 (618)
..+..++|.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4456699999999999973
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=46.98 E-value=8.4 Score=33.08 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999854
No 396
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=46.93 E-value=7.7 Score=33.67 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
+..+++.++.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999844
No 397
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=46.80 E-value=12 Score=32.47 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.2
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.+++|||||.++
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999855
No 398
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=46.74 E-value=19 Score=31.49 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
+..+++.+++|||||..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999854
No 399
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=46.35 E-value=19 Score=35.01 Aligned_cols=18 Identities=28% Similarity=0.315 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+-+++.++.|+|||.++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999997543
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.30 E-value=11 Score=37.13 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.+|||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999855
No 401
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=46.00 E-value=12 Score=33.61 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=21.6
Q ss_pred cceEEEccchhccCCC--cHHHHHHHHHHC----CCCCcEEEEEee
Q 007085 246 VQFVVLDEADQMLSVG--FAEDVEVILERL----PQNRQSMMFSAT 285 (618)
Q Consensus 246 ~~~vViDEaH~~~~~~--~~~~~~~il~~l----~~~~~~l~lSAT 285 (618)
-.+|||||||.+.... ..+. ..++..+ ....++|+++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999984321 1111 1233333 234567777666
No 402
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=45.82 E-value=13 Score=33.70 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=15.1
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007085 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (618)
+..++-+.|.+|+|+|||.
T Consensus 20 i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp --CCCCEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3456679999999999997
No 403
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.66 E-value=9 Score=33.75 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+-+++.+++|||||..+
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 404
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.41 E-value=8.1 Score=34.05 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.4
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
..+++.+++|||||.++
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999855
No 405
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=45.33 E-value=7.2 Score=33.96 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.+.-+.+.++.|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445889999999999844
No 406
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=44.96 E-value=13 Score=33.18 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
+..++|.++.|||||..+
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999743
No 407
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=44.83 E-value=17 Score=37.07 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.5
Q ss_pred CCEEEEccCCChhHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGI 155 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~ 155 (618)
..+++.+++|+|||..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
No 408
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=44.70 E-value=9.5 Score=34.06 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.++|.++.|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36999999999999854
No 409
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=44.54 E-value=11 Score=32.52 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999854
No 410
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=43.98 E-value=14 Score=33.24 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=15.9
Q ss_pred HHhCCCCEEEEccCCChhHHH
Q 007085 132 PAMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~ 152 (618)
.+..+.-+.|.+|.|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566677789999999999973
No 411
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.97 E-value=13 Score=32.64 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.0
Q ss_pred CEEEEccCCChhHHH
Q 007085 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (618)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999973
No 412
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=43.93 E-value=10 Score=34.68 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+++.+++|||||.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 413
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=43.60 E-value=15 Score=34.04 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
..+.+++.++.|||||+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456999999999999855
No 414
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=43.47 E-value=54 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999854
No 415
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=43.44 E-value=15 Score=32.30 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.0
Q ss_pred CEEEEccCCChhHHH
Q 007085 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (618)
-+.|.+|+|+|||..
T Consensus 3 ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999973
No 416
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=43.41 E-value=16 Score=35.16 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.3
Q ss_pred CCCEEEEccCCChhHHH
Q 007085 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (618)
+.-+.+.+++|+|||+.
T Consensus 100 g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 44588999999999974
No 417
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=43.29 E-value=12 Score=35.96 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.3
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+|+|+|||..+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 6999999999999855
No 418
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=43.09 E-value=12 Score=32.78 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.++|.+++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999855
No 419
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.09 E-value=12 Score=33.46 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.6
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 420
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=42.98 E-value=10 Score=33.26 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.++.|||||+.+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 421
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=42.94 E-value=25 Score=44.61 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=31.0
Q ss_pred CHHHHHHHHHcCCCCChHHH-HHHH---HHHhCCCCEEEEccCCChhHHHHH
Q 007085 107 SQDIVAALARRGISKLFPIQ-KAVL---EPAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q-~~~i---~~i~~~~~~li~~~tGsGKT~~~l 154 (618)
.+.+.+.+.+.++. +++.+ .+++ +.+...+.+++.+|||||||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 44556666666766 45544 3333 334456779999999999998654
No 422
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.77 E-value=22 Score=34.54 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=12.5
Q ss_pred CEEEEccCCChhHH
Q 007085 138 DMIGRARTGTGKTL 151 (618)
Q Consensus 138 ~~li~~~tGsGKT~ 151 (618)
-++|.++.|+|||+
T Consensus 6 v~~i~G~~GaGKTT 19 (318)
T 1nij_A 6 VTLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEEESSSSSCHH
T ss_pred EEEEEecCCCCHHH
Confidence 37899999999997
No 423
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.76 E-value=14 Score=36.25 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
..+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999744
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=42.67 E-value=13 Score=33.52 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+++|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
No 425
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=42.66 E-value=14 Score=32.51 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.3
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-+++.+++|+|||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3688999999999843
No 426
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=42.41 E-value=9.6 Score=34.13 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.9
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++-+++.++.|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445889999999999854
No 427
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.38 E-value=13 Score=37.50 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.+|||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3788999999999755
No 428
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=42.35 E-value=8.2 Score=34.66 Aligned_cols=22 Identities=18% Similarity=-0.068 Sum_probs=16.5
Q ss_pred HHhCCCCEEEEccCCChhHHHH
Q 007085 132 PAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.+..+.-+.|.+++|||||+.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3444456889999999999843
No 429
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=42.15 E-value=13 Score=33.18 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.5
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.+.-++|.+++|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 430
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.12 E-value=18 Score=37.41 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
..++|+.+|+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 357999999999999855
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=42.09 E-value=18 Score=30.56 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=12.6
Q ss_pred EEEEccCCChhHHH
Q 007085 139 MIGRARTGTGKTLA 152 (618)
Q Consensus 139 ~li~~~tGsGKT~~ 152 (618)
.+|.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999974
No 432
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=41.86 E-value=44 Score=36.32 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=50.3
Q ss_pred CcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-C-CCCCc
Q 007085 345 GKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-L-DVPNV 412 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~G-l-Di~~~ 412 (618)
.++||++|++.-+..+++.+.+ .+.+..++|+.+...+...+. ...+|+|+|. .+..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 6899999999988888877754 467888999876443322221 1478999995 23333 3 56677
Q ss_pred cEEEEcCCCC
Q 007085 413 DLIIHYELPN 422 (618)
Q Consensus 413 ~~VI~~~~p~ 422 (618)
++||.-.+..
T Consensus 138 ~~vViDEaH~ 147 (696)
T 2ykg_A 138 TLMIFDECHN 147 (696)
T ss_dssp SEEEEETGGG
T ss_pred cEEEEeCCCc
Confidence 8888755443
No 433
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=41.61 E-value=25 Score=27.64 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCC
Q 007085 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDIS 378 (618)
Q Consensus 334 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~ 378 (618)
+...+....+..+++|||.+-..+...+..|.+ .+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 333444445677899999998888888888865 478888888854
No 434
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=41.52 E-value=11 Score=33.45 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+++.+++|||||.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 435
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=41.39 E-value=16 Score=33.14 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++.+++.+++|||||+++
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 436
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=41.11 E-value=36 Score=33.21 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCCcceEEEccchh-ccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 230 GRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 230 ~~l~~~l~~~~~~~~~~~~vViDEaH~-~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
..+.+.+....+ +...++|||||+|. +... ....+.+.++..+++..+|+.+.++.
T Consensus 62 ~~l~~~~~~~pl-f~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 62 NAIFSLCQAMSL-FASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKLS 118 (343)
T ss_dssp HHHHHHHHHHHH-CCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCCC
T ss_pred HHHHHHhcCcCC-ccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 344444433333 56788999999998 6432 44556666665555555555554443
No 437
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=41.05 E-value=31 Score=29.92 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=15.7
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
-+.+.++.|||||... ..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhh
Confidence 4788999999999733 3344333
No 438
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.01 E-value=15 Score=39.41 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=14.3
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
++|+.+|+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999733
No 439
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=40.94 E-value=17 Score=33.03 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999855
No 440
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=40.94 E-value=12 Score=33.13 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=13.3
Q ss_pred CCEEEEccCCChhHH
Q 007085 137 RDMIGRARTGTGKTL 151 (618)
Q Consensus 137 ~~~li~~~tGsGKT~ 151 (618)
+-++|++|.|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 348999999999997
No 441
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=40.66 E-value=2.3e+02 Score=29.20 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHHHHHHh---CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc--CcHHHHHHHHHHHHH
Q 007085 127 KAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHE 195 (618)
Q Consensus 127 ~~~i~~i~---~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~--Pt~~La~q~~~~l~~ 195 (618)
.++|+.+. +++..+|.++.|+|||..++-.|++....+.. ........++|+. -...-+.++.+++..
T Consensus 150 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~-~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG-TDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTS-CCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccc-cccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 35666544 68999999999999998655445544432100 0001122333332 233445556666665
No 442
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=40.66 E-value=62 Score=36.18 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=42.2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~ 401 (618)
.+..++|.++|..-|...++.+.. .+.+.++.++++.++|.... .++|+++|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 466899999999999888877644 47788899999977766554 378999996
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=40.63 E-value=16 Score=33.56 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+++.+++|||||.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357999999999999855
No 444
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=40.56 E-value=8.7 Score=37.76 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.2
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
..++++.+|+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999844
No 445
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=40.56 E-value=11 Score=32.78 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=14.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++.+++.+++|||||.++
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455889999999999844
No 446
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=40.55 E-value=11 Score=36.06 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-+++.+++|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999844
No 447
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=40.54 E-value=30 Score=31.16 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=20.5
Q ss_pred EEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 140 li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
+....+|.|||.+++..+.... + .+.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la-~--------~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAK-A--------AGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHH-H--------TTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHH-H--------CCCCEEEEcc
Confidence 4455689999987754443332 2 1567888755
No 448
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=40.28 E-value=38 Score=31.70 Aligned_cols=57 Identities=7% Similarity=-0.013 Sum_probs=33.4
Q ss_pred HHHHhCC-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 130 LEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 130 i~~i~~~-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
++.++.+ ..++|.+.+|+|||+.++..+.+.+.+ +-++++++-. +-..++.+.+..+
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~---------Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS---------DNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT---------TCEEEEEECS-SCHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC---------CCcEEEEEEe-CCHHHHHHHHHHc
Confidence 4555543 457888788888885444444444433 5567777653 3445555555554
No 449
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=40.26 E-value=15 Score=32.50 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.++|.+++|||||+.+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999844
No 450
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=39.89 E-value=23 Score=38.01 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHhCCCCEEEEccCCChhHHHH
Q 007085 131 EPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
..+..+..+++.+|+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34566789999999999999844
No 451
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=39.88 E-value=12 Score=34.02 Aligned_cols=19 Identities=21% Similarity=-0.018 Sum_probs=15.4
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.+.-+.|.+|+|+|||..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4456899999999999743
No 452
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=39.62 E-value=16 Score=31.96 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 453
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=39.53 E-value=11 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=11.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+++.++.|||||.++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 454
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=39.51 E-value=1.9e+02 Score=25.22 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=47.6
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhh----cCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCch
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~----~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~ 211 (618)
+..+-+....|-|=|+.+.+|+...-...... .....+.++|||-........+...|.+.. +..+.
T Consensus 20 gG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g--~~~v~------- 90 (206)
T 3mm4_A 20 MASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG--VSEVE------- 90 (206)
T ss_dssp -----------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT--CSEEE-------
T ss_pred CCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC--CCeee-------
Confidence 44577788899999988888864432211110 111234577777777666666666665541 21111
Q ss_pred HHHHHHhhcCCCEEEEChHHHHHHHHhc--------CCCCCCcceEEEccchhccCCCcHHHHHHHHHH---CCCCCcEE
Q 007085 212 SHQMRALDYGVDAVVGTPGRVIDLIKRN--------ALNLSEVQFVVLDEADQMLSVGFAEDVEVILER---LPQNRQSM 280 (618)
Q Consensus 212 ~~~~~~~~~~~~Ilv~T~~~l~~~l~~~--------~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~---l~~~~~~l 280 (618)
.+.+....+..+... ...-..+++||+|= .|.+..-...+..+... ..+...+|
T Consensus 91 -------------~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~~~piI 155 (206)
T 3mm4_A 91 -------------QCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGVRTPII 155 (206)
T ss_dssp -------------EESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTCCCCEE
T ss_pred -------------eeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCCCCcEE
Confidence 122333333333321 12234678899883 23333333333444332 34678899
Q ss_pred EEEeeC
Q 007085 281 MFSATM 286 (618)
Q Consensus 281 ~lSAT~ 286 (618)
++|+..
T Consensus 156 ~ls~~~ 161 (206)
T 3mm4_A 156 AVSGHD 161 (206)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999976
No 455
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.49 E-value=27 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=22.4
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (618)
+++.+..|.|||.++...++..... +.++|+|-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS---------GKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC---------CCcEEEEe
Confidence 5778999999998776554443322 55677764
No 456
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=39.42 E-value=13 Score=33.23 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+.|.+++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999844
No 457
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=39.42 E-value=74 Score=35.46 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=49.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-c-----cc------
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----AR------ 405 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~-----~~------ 405 (618)
.+..++|.|++..-|...++.+.. .+.+.++.++++.++|.... .++|+++|+- + ..
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~ 224 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSL 224 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccH
Confidence 456899999999999887776643 47888899999887665443 3789999962 1 11
Q ss_pred -CCCCCCccEEEE
Q 007085 406 -GLDVPNVDLIIH 417 (618)
Q Consensus 406 -GlDi~~~~~VI~ 417 (618)
-++...+.++|.
T Consensus 225 ~~l~lr~l~~lIV 237 (922)
T 1nkt_A 225 DDLVQRGHHYAIV 237 (922)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhccCCCCEEEE
Confidence 255666777775
No 458
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.19 E-value=20 Score=32.20 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=13.9
Q ss_pred CCCEEEEccCCChhHHH
Q 007085 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (618)
+.-+.|.+++|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999973
No 459
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=39.15 E-value=78 Score=32.59 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=51.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh---cC--CC-EEEEChHHHHHHHHhcCCCCCCc
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---YG--VD-AVVGTPGRVIDLIKRNALNLSEV 246 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~-Ilv~T~~~l~~~l~~~~~~~~~~ 246 (618)
+.++||.+.++..+..+.+.+.+.. ...+..+++..+...+.+.++ .+ +. +|++| ..-...+++...
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st------~~~~~Glnl~~~ 413 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV------KAGGFGINLTSA 413 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC------CCC-CCCCCTTC
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec------ccccCCCchhhC
Confidence 5689999999999998888887642 356777888887666554433 22 43 67776 222345678888
Q ss_pred ceEEEccch
Q 007085 247 QFVVLDEAD 255 (618)
Q Consensus 247 ~~vViDEaH 255 (618)
+.||+-+..
T Consensus 414 ~~vi~~d~~ 422 (500)
T 1z63_A 414 NRVIHFDRW 422 (500)
T ss_dssp SEEEESSCC
T ss_pred CEEEEeCCC
Confidence 888865544
No 460
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=39.11 E-value=1.1e+02 Score=35.05 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
+.+++|+|+++.-|...++.+.+..
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhh
Confidence 5689999999999999999998764
No 461
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=39.07 E-value=13 Score=33.05 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+++|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 462
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=38.77 E-value=13 Score=33.15 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=13.5
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+.|.++.|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 463
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=38.73 E-value=13 Score=33.37 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.++-+++.++.|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3456899999999999854
No 464
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=38.50 E-value=17 Score=32.85 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||.++
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999854
No 465
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=38.50 E-value=14 Score=33.12 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
+++-+++.++.|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456899999999999854
No 466
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.29 E-value=26 Score=34.72 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.5
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-+.+.+++|+|||+..
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4789999999999743
No 467
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.16 E-value=17 Score=33.03 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+-++|.+|+||||++.+
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999999865
No 468
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.09 E-value=57 Score=42.04 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=31.1
Q ss_pred CHHHHHHHHHcCCCCChHHH-HHHHH---HHhCCCCEEEEccCCChhHHHHH
Q 007085 107 SQDIVAALARRGISKLFPIQ-KAVLE---PAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q-~~~i~---~i~~~~~~li~~~tGsGKT~~~l 154 (618)
...+.+.+.+.++. +.+.+ .+++. .+...+.+++.+|||+|||.++-
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 45555666667776 45544 44443 34445669999999999998653
No 469
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=38.04 E-value=7.6 Score=43.37 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
....+++.+|+|+|||+.+
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 3467999999999999844
No 470
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=37.88 E-value=19 Score=31.30 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=12.9
Q ss_pred CEEEEccCCChhHHH
Q 007085 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (618)
-.+|.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468999999999973
No 471
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=37.85 E-value=14 Score=32.43 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.++.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 472
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=37.69 E-value=14 Score=33.68 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+++|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 473
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.24 E-value=18 Score=32.73 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
..+.|.+++|||||+++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 474
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=37.21 E-value=20 Score=32.65 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=14.8
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007085 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (618)
+..+.-++|.+|.|+|||.
T Consensus 13 ~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp --CCCEEEEECCTTSCHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 3445668999999999997
No 475
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=36.97 E-value=15 Score=32.35 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.2
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+++.++.|||||+++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999854
No 476
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=36.85 E-value=2.2e+02 Score=29.41 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHh---CCCCEEEEccCCChhHHHH
Q 007085 128 AVLEPAM---QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~---~~~~~li~~~tGsGKT~~~ 153 (618)
++|+.+. +++..+|.++.|+|||..+
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTALA 179 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHHH
T ss_pred eeeccccccccCCEEEeecCCCCCcchHH
Confidence 5666554 6889999999999999854
No 477
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=36.83 E-value=20 Score=35.52 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.4
Q ss_pred CCCC--EEEEccCCChhHHHH
Q 007085 135 QGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~--~li~~~tGsGKT~~~ 153 (618)
.+.+ ++..+.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3555 688999999999865
No 478
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=36.51 E-value=1.2e+02 Score=31.38 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=21.9
Q ss_pred HHHHHHHh---CCCCEEEEccCCChhHHHHH
Q 007085 127 KAVLEPAM---QGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 127 ~~~i~~i~---~~~~~li~~~tGsGKT~~~l 154 (618)
.++|+.+. +++..+|.++.|+|||..++
T Consensus 163 iraID~l~PigrGQR~~I~g~~g~GKT~Lal 193 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGDRQTGKTAIAI 193 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEETTSSHHHHHH
T ss_pred ccccccccccccCCEEEEEcCCCCCccHHHH
Confidence 45666554 68999999999999998543
No 479
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.47 E-value=23 Score=35.44 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=24.7
Q ss_pred CcceEEEccchhccCC---CcHHHHHHHHHHCCC-CCcEEEEEee
Q 007085 245 EVQFVVLDEADQMLSV---GFAEDVEVILERLPQ-NRQSMMFSAT 285 (618)
Q Consensus 245 ~~~~vViDEaH~~~~~---~~~~~~~~il~~l~~-~~~~l~lSAT 285 (618)
.-.++|+||+|.++.. .+...+..+++..++ +.-+++.|-+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~ 306 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQN 306 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCC
Confidence 4578999999999852 244556666666543 3333443433
No 480
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=36.39 E-value=11 Score=34.67 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=12.1
Q ss_pred HhCCCCEEEEccCCChhHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~ 152 (618)
+..+.-+.|.+|+|||||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34556688999999999974
No 481
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=36.35 E-value=48 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=31.0
Q ss_pred HHHHhhcC-CcEEEEe-cchhHHHHHHHHHHh-cCCeeeecCcCCH
Q 007085 337 LITEHAKG-GKCIVFT-QTKRDADRLAHAMAK-SYNCEPLHGDISQ 379 (618)
Q Consensus 337 ~l~~~~~~-~~~lVf~-~~~~~~~~l~~~L~~-~~~~~~lhg~~~~ 379 (618)
.+....+. .+++|+| .+-..+..++..|.. .+++..+.|++..
T Consensus 81 ~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 81 QAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 33444455 7899999 577777788888865 4788888888754
No 482
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=36.25 E-value=1.5e+02 Score=32.75 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhc----C
Q 007085 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY----G 221 (618)
Q Consensus 146 GsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 221 (618)
.++|.. .+.-++..+. ..+.++||.+.....+.-+.+.|... .+.+..++|..+...+...+.. .
T Consensus 554 ~s~K~~-~L~~lL~~~~--------~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 554 SSGKMV-LLDQLLTRLK--------KDGHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp TCHHHH-HHHHHHHHHT--------TTTCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cChHHH-HHHHHHHHHh--------hCCCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 467764 3344444332 23568999999999988888888765 5777888888887777665542 1
Q ss_pred ---CCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 222 ---VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 222 ---~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
.-+|++| ..-...+++...+.||+=+.
T Consensus 623 ~~~~v~LlSt------~agg~GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 623 SNDFVFLLST------RAGGLGINLMTADTVVIFDS 652 (800)
T ss_dssp CSCCCEEEEH------HHHTTTCCCTTCCEEEESSC
T ss_pred CCceEEEEec------ccccCCCCccccceEEEecC
Confidence 2367776 33345678888888885333
No 483
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=36.19 E-value=14 Score=32.18 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.1
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-+.|.+++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999743
No 484
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=36.13 E-value=32 Score=33.86 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=22.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (618)
+++.+..|.|||.++...++..... +.++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK---------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS---------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC---------CCeEEEEe
Confidence 6778999999998775544433221 55677765
No 485
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=36.04 E-value=41 Score=38.98 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=52.9
Q ss_pred HHHhhcCCcEEEEecchhHHHHHHHHHHhcC-CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-CCCC
Q 007085 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-LDVP 410 (618)
Q Consensus 338 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~~G-lDi~ 410 (618)
+.....+.++||.+|++.-+..+++.+.+.+ .+..++|+++. +.+.+|+|+|+ .+..+ ..+.
T Consensus 221 ~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~ 289 (1108)
T 3l9o_A 221 AQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMR 289 (1108)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHH
T ss_pred HHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccc
Confidence 3334567799999999999999999987653 67788888762 35688999994 44444 3356
Q ss_pred CccEEEEcCCC
Q 007085 411 NVDLIIHYELP 421 (618)
Q Consensus 411 ~~~~VI~~~~p 421 (618)
++.+||+-...
T Consensus 290 ~l~lVVIDEaH 300 (1108)
T 3l9o_A 290 EVAWVIFDEVH 300 (1108)
T ss_dssp HEEEEEEETGG
T ss_pred cCCEEEEhhhh
Confidence 67888875554
No 486
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=35.14 E-value=20 Score=34.62 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.4
Q ss_pred hCCCCEEEEccCCChhHH
Q 007085 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (618)
..+..+.|.+|+|+|||.
T Consensus 124 ~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp TTCSEEEEECSSSSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356678999999999997
No 487
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=34.99 E-value=23 Score=34.41 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.7
Q ss_pred CCCCEEEEccCCChhHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~ 156 (618)
.+..++|.+|+|+|||..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3445799999999999865443
No 488
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=34.86 E-value=1.1e+02 Score=34.99 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=49.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCC-------------------------------------CCceEEEEcCCchHHHH
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAP-------------------------------------SLDTICVYGGTPISHQM 215 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~-------------------------------------~~~~~~~~~~~~~~~~~ 215 (618)
..++||.|+++.-+.+.++.+.+... ...+..++++.....+.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 45799999999999888877754211 11467778887766554
Q ss_pred HHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 216 RALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 216 ~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
..+. ...+||||| + +....+++.+ ..||+....
T Consensus 416 ~v~~~F~~G~~kVLvAT-----~-~~a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFAT-----E-TFAMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp HHHHHHHTTCCSEEEEC-----T-HHHHSCCCCC-SEEEESCSE
T ss_pred HHHHHHHCCCCcEEEEc-----h-HhhCCCCCCC-ceEEEeccc
Confidence 3332 358999999 3 3445677888 555554443
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=34.86 E-value=21 Score=31.33 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=12.9
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
++|.+++|||||.-+
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 689999999999744
No 490
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=34.70 E-value=2.2e+02 Score=24.34 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=46.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCCC
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYELP 421 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~p 421 (618)
...+.|.|.+..++..+.+.|.+. +++..+..... .-.-.|.|.|--...|+.+ ++||.+++.
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecCC
Confidence 567899999999999999999765 77766654321 1124689999889999875 666766654
No 491
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=34.56 E-value=30 Score=30.12 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=15.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDK 160 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~ 160 (618)
-+++.++.|+|||. ++..++..
T Consensus 8 ~i~i~G~sGsGKTT-l~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTT-LLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHH-HHHHHHHh
Confidence 47899999999997 33334433
No 492
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=34.42 E-value=21 Score=31.51 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+.|.+++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 493
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=34.41 E-value=26 Score=31.05 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=24.3
Q ss_pred CCCcceEEEccchhc--cCCCcHHHHHHHHHHCCCCCcEEEEEeeC
Q 007085 243 LSEVQFVVLDEADQM--LSVGFAEDVEVILERLPQNRQSMMFSATM 286 (618)
Q Consensus 243 ~~~~~~vViDEaH~~--~~~~~~~~~~~il~~l~~~~~~l~lSAT~ 286 (618)
..+.+++|+||+..+ .+..+...+.+++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 466789999998766 333344555555442 33345446665
No 494
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=34.34 E-value=1.8e+02 Score=31.24 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=58.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh---cC-
Q 007085 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---YG- 221 (618)
Q Consensus 146 GsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 221 (618)
-+||.. .+..++..+.. ..+.++||++.++..+..+.+.+... .+.+..++|+.+...+...++ .+
T Consensus 397 ~s~K~~-~l~~ll~~~~~-------~~~~k~lIFs~~~~~~~~l~~~l~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 397 LSGKML-VLDYILAMTRT-------TTSDKVVLVSNYTQTLDLFEKLCRNR--RYLYVRLDGTMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp GSHHHH-HHHHHHHHHHH-------HCCCEEEEEESCHHHHHHHHHHHHHH--TCCEEEECSSCCHHHHHHHHHHHHSTT
T ss_pred cChHHH-HHHHHHHHHhh-------cCCCEEEEEEccHHHHHHHHHHHHHC--CCCEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 477875 33334443322 12568999999999988888888765 467788888887766655443 22
Q ss_pred C---CEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 222 V---DAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 222 ~---~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
. -+|++| ..-...+++...+.||+=+
T Consensus 467 ~~~~v~L~st------~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 467 SPEFIFMLSS------KAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCCCEEEEEG------GGSCTTCCCTTEEEEEECS
T ss_pred CCcEEEEEec------ccccCCcccccCCEEEEEC
Confidence 2 366676 2233456788888888533
No 495
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=33.96 E-value=34 Score=36.42 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=18.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
-+++.+..|.|||.+++..++...
T Consensus 10 i~~~sgkGGvGKTT~a~~lA~~lA 33 (589)
T 1ihu_A 10 YLFFTGKGGVGKTSISCATAIRLA 33 (589)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCcCHHHHHHHHHHHHHH
Confidence 478899999999998765554443
No 496
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=33.69 E-value=31 Score=33.66 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+++.+..|.|||.++...++..... +.+++++
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~---------G~rVllv 53 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV---------RSSVLLI 53 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS---------SSCEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC---------CCeEEEE
No 497
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=33.60 E-value=18 Score=33.91 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+++.|++|||||..+
T Consensus 7 Ivl~G~pGSGKSTla 21 (260)
T 3a4m_A 7 IILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
No 498
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.35 E-value=28 Score=36.07 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+..+.-+.|.+++|+|||+ ++..+..++. ..+.++++.
T Consensus 290 i~~GeVI~LVGpNGSGKTT--Ll~~LAgll~-------~~~G~V~l~ 327 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTT--TIGKLARQFE-------QQGKSVMLA 327 (503)
T ss_dssp SCTTEEEEEECCTTSSHHH--HHHHHHHHHH-------HTTCCEEEE
T ss_pred ccCCeEEEEECCCcccHHH--HHHHHHHHhh-------hcCCeEEEe
No 499
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=33.30 E-value=23 Score=31.65 Aligned_cols=19 Identities=21% Similarity=-0.006 Sum_probs=0.0
Q ss_pred EEEEccCCChhHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~ 157 (618)
+.|.+++|||||+.+-+..
T Consensus 9 i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 500
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=33.24 E-value=17 Score=33.47 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HhCCCCEEEEccCCChhHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (618)
+..+.-+.|.+|.|||||+..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Done!