Query 007085
Match_columns 618
No_of_seqs 495 out of 2974
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 16:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007085.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007085hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j0sa1 c.37.1.19 (A:22-243) P 100.0 4.4E-37 3.2E-41 289.3 23.2 204 97-306 15-220 (222)
2 d1veca_ c.37.1.19 (A:) DEAD bo 100.0 2.2E-36 1.6E-40 282.5 25.3 201 98-304 2-205 (206)
3 d1t6na_ c.37.1.19 (A:) Spliceo 100.0 2.1E-35 1.5E-39 276.1 23.4 200 100-305 2-206 (207)
4 d2g9na1 c.37.1.19 (A:21-238) I 100.0 2.3E-35 1.7E-39 277.4 21.1 206 95-306 8-216 (218)
5 d1qdea_ c.37.1.19 (A:) Initiat 100.0 9.5E-35 6.9E-39 272.2 23.3 203 96-305 7-211 (212)
6 d1hv8a1 c.37.1.19 (A:3-210) Pu 100.0 2.1E-34 1.5E-38 269.9 22.4 200 99-306 4-206 (208)
7 d1wrba1 c.37.1.19 (A:164-401) 100.0 2.6E-34 1.9E-38 274.3 20.8 213 94-306 16-237 (238)
8 d1s2ma1 c.37.1.19 (A:46-251) P 100.0 9.2E-34 6.7E-38 265.4 22.4 201 100-306 2-204 (206)
9 d2bmfa2 c.37.1.14 (A:178-482) 100.0 3.8E-33 2.7E-37 279.4 19.5 273 132-450 5-300 (305)
10 d1q0ua_ c.37.1.19 (A:) Probabl 100.0 2.6E-32 1.9E-36 256.8 19.5 201 100-306 2-208 (209)
11 d1fuka_ c.37.1.19 (A:) Initiat 99.9 1.5E-27 1.1E-31 212.6 17.6 154 319-473 2-157 (162)
12 d1s2ma2 c.37.1.19 (A:252-422) 99.9 4.5E-27 3.3E-31 212.1 20.7 158 315-473 4-162 (171)
13 d2j0sa2 c.37.1.19 (A:244-411) 99.9 5.1E-27 3.7E-31 210.2 19.8 156 315-471 5-162 (168)
14 d1gm5a3 c.37.1.19 (A:286-549) 99.9 3.4E-28 2.4E-32 231.1 11.0 228 41-295 11-250 (264)
15 d1hv8a2 c.37.1.19 (A:211-365) 99.9 1.3E-26 9.8E-31 205.5 18.1 151 317-469 3-154 (155)
16 d1t5ia_ c.37.1.19 (A:) Spliceo 99.9 6.2E-26 4.5E-30 203.4 17.8 155 318-473 2-158 (168)
17 d2rb4a1 c.37.1.19 (A:307-474) 99.9 8.9E-26 6.4E-30 202.2 18.0 155 316-471 4-166 (168)
18 d2p6ra3 c.37.1.19 (A:1-202) He 99.9 1.9E-26 1.4E-30 215.1 14.1 185 106-304 10-198 (202)
19 d1oywa3 c.37.1.19 (A:207-406) 99.9 1E-24 7.4E-29 200.4 19.1 134 325-459 12-146 (200)
20 d1oywa2 c.37.1.19 (A:1-206) Re 99.9 1.3E-24 9.7E-29 203.2 15.6 187 101-302 4-202 (206)
21 d1gkub1 c.37.1.16 (B:1-250) He 99.9 1.7E-24 1.2E-28 207.1 14.6 167 112-293 34-221 (237)
22 d1c4oa2 c.37.1.19 (A:410-583) 99.9 2E-23 1.4E-27 184.2 17.9 123 330-453 17-145 (174)
23 d1wp9a1 c.37.1.19 (A:1-200) pu 99.9 1.2E-22 9E-27 188.9 21.1 164 120-293 8-173 (200)
24 d2eyqa3 c.37.1.19 (A:546-778) 99.9 2.3E-22 1.7E-26 186.9 20.1 173 104-295 38-222 (233)
25 d1t5la2 c.37.1.19 (A:415-595) 99.9 1.4E-22 1E-26 182.1 17.7 117 331-448 18-140 (181)
26 d2eyqa5 c.37.1.19 (A:779-989) 99.8 4.1E-20 3E-24 166.3 17.9 122 329-450 16-141 (211)
27 d1gm5a4 c.37.1.19 (A:550-755) 99.8 5.7E-22 4.1E-26 180.9 5.3 130 331-460 16-158 (206)
28 d1jr6a_ c.37.1.14 (A:) HCV hel 99.8 1.2E-19 8.8E-24 155.1 9.1 99 343-451 34-137 (138)
29 d2fz4a1 c.37.1.19 (A:24-229) D 99.8 8.3E-19 6E-23 162.8 14.4 138 120-287 69-206 (206)
30 d1wp9a2 c.37.1.19 (A:201-486) 99.8 1.3E-18 9.3E-23 170.7 13.9 122 330-452 144-277 (286)
31 d1rifa_ c.37.1.23 (A:) DNA hel 99.8 6.9E-19 5E-23 170.9 9.8 152 120-289 112-265 (282)
32 d2p6ra4 c.37.1.19 (A:203-403) 99.8 2.6E-18 1.9E-22 157.8 12.9 112 342-453 38-189 (201)
33 d1yksa1 c.37.1.14 (A:185-324) 99.7 3.4E-18 2.5E-22 148.5 7.2 136 133-287 4-140 (140)
34 d2fwra1 c.37.1.19 (A:257-456) 99.7 4.7E-18 3.4E-22 157.0 8.0 109 328-441 78-186 (200)
35 d1a1va1 c.37.1.14 (A:190-325) 99.7 6.6E-17 4.8E-21 139.4 9.6 127 136-286 8-136 (136)
36 d1gkub2 c.37.1.16 (B:251-498) 99.6 1E-18 7.6E-23 167.2 -4.5 119 327-456 10-133 (248)
37 d1a1va2 c.37.1.14 (A:326-624) 99.6 7.3E-17 5.3E-21 151.5 6.0 105 343-448 35-153 (299)
38 d1z3ix2 c.37.1.19 (X:92-389) R 99.6 1.3E-14 9.2E-19 142.5 16.8 160 121-288 55-232 (298)
39 d1z3ix1 c.37.1.19 (X:390-735) 99.5 9.9E-14 7.2E-18 137.5 15.3 120 328-447 100-225 (346)
40 d1z63a1 c.37.1.19 (A:432-661) 99.5 1.3E-13 9.7E-18 129.7 12.1 149 121-288 12-164 (230)
41 d1z5za1 c.37.1.19 (A:663-906) 99.4 1.1E-13 8.3E-18 131.3 10.9 119 328-446 68-191 (244)
42 d1yksa2 c.37.1.14 (A:325-623) 99.3 7.6E-12 5.5E-16 120.0 12.6 101 343-448 35-155 (299)
43 d1tf5a4 c.37.1.19 (A:396-570) 99.1 3.5E-10 2.5E-14 97.5 14.4 124 326-451 15-148 (175)
44 d1tf5a3 c.37.1.19 (A:1-226,A:3 98.6 9.4E-08 6.9E-12 87.5 12.3 125 121-258 80-213 (273)
45 d1nkta3 c.37.1.19 (A:-15-225,A 98.6 5.9E-08 4.3E-12 89.3 8.7 124 122-258 98-230 (288)
46 d1nkta4 c.37.1.19 (A:397-615) 98.5 6.3E-07 4.6E-11 78.2 12.6 122 328-452 17-193 (219)
47 d1w36d1 c.37.1.19 (D:2-360) Ex 98.2 2.3E-06 1.7E-10 84.1 11.3 143 120-283 147-295 (359)
48 d1uaaa1 c.37.1.19 (A:2-307) DE 97.4 9.5E-05 6.9E-09 70.9 7.7 71 121-198 1-71 (306)
49 d2eyqa5 c.37.1.19 (A:779-989) 97.4 0.00023 1.7E-08 62.7 9.0 92 173-274 31-126 (211)
50 d1a5ta2 c.37.1.20 (A:1-207) de 97.0 0.00039 2.9E-08 62.2 5.9 39 122-161 3-48 (207)
51 d1pjra1 c.37.1.19 (A:1-318) DE 96.9 0.00063 4.6E-08 65.3 7.6 70 120-196 10-79 (318)
52 d1l8qa2 c.37.1.20 (A:77-289) C 96.9 0.0027 2E-07 56.7 10.9 103 138-288 38-142 (213)
53 d1gm5a3 c.37.1.19 (A:286-549) 96.7 0.0039 2.9E-07 57.2 10.6 101 329-431 116-223 (264)
54 d1ls1a2 c.37.1.10 (A:89-295) G 96.6 0.0064 4.7E-07 53.6 10.5 56 243-298 90-146 (207)
55 d2gnoa2 c.37.1.20 (A:11-208) g 96.5 0.0055 4E-07 53.9 10.0 45 243-288 77-121 (198)
56 d1sxje2 c.37.1.20 (E:4-255) Re 96.4 0.0031 2.3E-07 57.9 8.1 41 244-285 130-170 (252)
57 d1c4oa2 c.37.1.19 (A:410-583) 96.4 0.027 1.9E-06 47.8 13.1 76 173-256 31-110 (174)
58 d1ixza_ c.37.1.20 (A:) AAA dom 96.3 0.0078 5.7E-07 54.9 9.8 55 96-153 3-59 (247)
59 d1t5la1 c.37.1.19 (A:2-414) Nu 96.3 0.0047 3.4E-07 60.6 8.6 71 120-202 10-85 (413)
60 d2eyqa3 c.37.1.19 (A:546-778) 96.2 0.013 9.8E-07 52.4 10.6 96 327-422 86-188 (233)
61 d2b8ta1 c.37.1.24 (A:11-149) T 96.2 0.0067 4.9E-07 49.8 7.7 87 139-257 5-91 (139)
62 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 96.1 0.0026 1.9E-07 67.0 6.5 73 118-197 8-80 (623)
63 d1njfa_ c.37.1.20 (A:) delta p 95.9 0.023 1.7E-06 51.4 11.3 47 99-161 9-58 (239)
64 d1sxjc2 c.37.1.20 (C:12-238) R 95.7 0.026 1.9E-06 50.5 10.4 43 241-284 95-137 (227)
65 d1sxjb2 c.37.1.20 (B:7-230) Re 95.7 0.016 1.2E-06 51.9 8.8 45 243-288 99-143 (224)
66 d1t5la2 c.37.1.19 (A:415-595) 95.6 0.023 1.6E-06 48.8 9.2 76 173-256 31-110 (181)
67 d2qy9a2 c.37.1.10 (A:285-495) 95.5 0.058 4.2E-06 47.2 11.6 54 244-297 90-150 (211)
68 d1okkd2 c.37.1.10 (D:97-303) G 95.3 0.048 3.5E-06 47.7 10.2 53 244-296 87-146 (207)
69 d1vmaa2 c.37.1.10 (A:82-294) G 95.3 0.046 3.4E-06 48.0 10.1 54 243-296 91-151 (213)
70 d1xx6a1 c.37.1.24 (A:2-142) Th 95.2 0.018 1.3E-06 47.1 6.7 36 139-183 10-45 (141)
71 d1xbta1 c.37.1.24 (A:18-150) T 95.1 0.013 9.5E-07 47.6 5.4 35 139-182 5-39 (133)
72 d1lv7a_ c.37.1.20 (A:) AAA dom 95.0 0.08 5.8E-06 48.1 11.3 54 97-153 7-62 (256)
73 d1j8yf2 c.37.1.10 (F:87-297) G 94.9 0.12 9E-06 45.1 11.7 55 243-297 92-149 (211)
74 d1iqpa2 c.37.1.20 (A:2-232) Re 94.8 0.1 7.4E-06 46.5 11.4 41 100-153 22-62 (231)
75 d1sxjd2 c.37.1.20 (D:26-262) R 94.7 0.027 1.9E-06 50.7 7.3 50 243-293 106-155 (237)
76 d1fuka_ c.37.1.19 (A:) Initiat 94.6 0.089 6.4E-06 44.1 9.7 71 173-251 27-101 (162)
77 d1d2na_ c.37.1.20 (A:) Hexamer 94.3 0.17 1.2E-05 45.5 11.7 17 137-153 41-57 (246)
78 d1jbka_ c.37.1.20 (A:) ClpB, A 94.3 0.1 7.6E-06 44.8 9.5 26 137-163 44-69 (195)
79 d1hv8a2 c.37.1.19 (A:211-365) 94.0 0.14 9.9E-06 42.5 9.6 70 173-250 28-101 (155)
80 d1oywa3 c.37.1.19 (A:207-406) 93.7 0.71 5.2E-05 39.7 14.1 70 173-250 30-103 (200)
81 d1e32a2 c.37.1.20 (A:201-458) 93.6 0.097 7.1E-06 47.6 8.6 16 137-152 39-54 (258)
82 d1c4oa1 c.37.1.19 (A:2-409) Nu 93.2 0.082 6E-06 51.5 7.8 68 122-201 9-81 (408)
83 d1s2ma2 c.37.1.19 (A:252-422) 93.0 0.27 2E-05 41.3 10.1 73 173-253 32-108 (171)
84 d1g5ta_ c.37.1.11 (A:) ATP:cor 92.6 0.15 1.1E-05 42.1 7.4 53 241-293 90-144 (157)
85 d2j0sa2 c.37.1.19 (A:244-411) 92.5 0.22 1.6E-05 41.8 8.6 70 173-250 34-107 (168)
86 d1r6bx2 c.37.1.20 (X:169-436) 92.4 0.81 5.9E-05 41.2 13.0 26 137-163 40-65 (268)
87 d1t5ia_ c.37.1.19 (A:) Spliceo 92.3 0.29 2.1E-05 41.0 9.1 73 173-253 27-103 (168)
88 d1tf7a2 c.37.1.11 (A:256-497) 92.3 0.59 4.3E-05 41.4 12.0 56 130-195 15-75 (242)
89 d2rb4a1 c.37.1.19 (A:307-474) 91.2 0.43 3.2E-05 39.8 9.1 71 173-251 32-106 (168)
90 d1um8a_ c.37.1.20 (A:) ClpX {H 90.8 0.1 7.3E-06 50.1 5.0 17 137-153 69-85 (364)
91 d1gm5a4 c.37.1.19 (A:550-755) 90.8 0.014 1E-06 51.2 -1.2 92 173-274 29-133 (206)
92 d1yksa2 c.37.1.14 (A:325-623) 90.7 0.16 1.1E-05 47.0 6.1 69 173-250 36-104 (299)
93 d1g6oa_ c.37.1.11 (A:) Hexamer 90.3 0.077 5.6E-06 50.0 3.6 64 112-185 138-205 (323)
94 d1jr6a_ c.37.1.14 (A:) HCV hel 89.7 0.19 1.3E-05 40.7 5.0 66 173-250 35-100 (138)
95 d1p9ra_ c.37.1.11 (A:) Extrace 89.5 0.17 1.3E-05 49.2 5.6 39 122-161 142-182 (401)
96 d1sxja2 c.37.1.20 (A:295-547) 89.4 0.27 2E-05 44.1 6.6 53 99-153 11-69 (253)
97 d1ofha_ c.37.1.20 (A:) HslU {H 89.4 0.12 8.9E-06 48.3 4.2 18 136-153 49-66 (309)
98 d1w5sa2 c.37.1.20 (A:7-293) CD 89.3 0.51 3.7E-05 42.7 8.7 23 139-162 49-71 (287)
99 d2i3ba1 c.37.1.11 (A:1-189) Ca 86.5 0.42 3.1E-05 40.0 5.6 26 137-163 2-27 (189)
100 d1hv8a1 c.37.1.19 (A:3-210) Pu 86.2 0.96 7E-05 39.0 8.0 73 344-421 72-155 (208)
101 d1nlfa_ c.37.1.11 (A:) Hexamer 85.8 0.58 4.2E-05 42.4 6.6 65 130-196 23-89 (274)
102 d1e9ra_ c.37.1.11 (A:) Bacteri 85.8 0.3 2.2E-05 47.9 4.8 44 135-187 49-92 (433)
103 d1mo6a1 c.37.1.11 (A:1-269) Re 85.8 1.5 0.00011 39.4 9.2 49 136-193 60-108 (269)
104 d1u94a1 c.37.1.11 (A:6-268) Re 85.7 1.2 8.9E-05 39.9 8.6 52 129-189 41-98 (263)
105 d1g41a_ c.37.1.20 (A:) HslU {H 83.7 0.21 1.5E-05 49.1 2.5 18 136-153 49-66 (443)
106 d1qvra2 c.37.1.20 (A:149-535) 81.4 8.2 0.00059 36.4 13.0 117 137-256 44-186 (387)
107 d1gkub1 c.37.1.16 (B:1-250) He 81.2 2.8 0.0002 36.7 9.1 80 338-419 80-170 (237)
108 d2j0sa1 c.37.1.19 (A:22-243) P 80.5 2.2 0.00016 37.0 7.9 74 344-421 85-169 (222)
109 d1kaga_ c.37.1.2 (A:) Shikimat 80.3 0.47 3.4E-05 38.8 3.1 18 137-154 3-20 (169)
110 d2hyda1 c.37.1.12 (A:324-578) 80.1 0.12 8.6E-06 46.8 -1.0 19 133-151 41-59 (255)
111 d1ixsb2 c.37.1.20 (B:4-242) Ho 79.9 1.4 0.0001 38.6 6.6 17 137-153 36-52 (239)
112 d1in4a2 c.37.1.20 (A:17-254) H 79.9 1.9 0.00014 37.7 7.5 17 137-153 36-52 (238)
113 d2pmka1 c.37.1.12 (A:467-707) 79.4 0.17 1.2E-05 45.2 -0.1 19 133-151 26-44 (241)
114 d1xp8a1 c.37.1.11 (A:15-282) R 78.0 2.3 0.00016 38.2 7.3 54 129-191 44-103 (268)
115 d1y63a_ c.37.1.1 (A:) Probable 77.9 0.48 3.5E-05 39.3 2.4 18 136-153 5-22 (174)
116 d1t6na_ c.37.1.19 (A:) Spliceo 77.7 1.4 0.00011 37.8 5.7 74 345-421 70-155 (207)
117 d1rkba_ c.37.1.1 (A:) Adenylat 77.5 0.62 4.5E-05 38.5 3.1 18 136-153 4-21 (173)
118 d1r7ra3 c.37.1.20 (A:471-735) 76.7 0.49 3.6E-05 42.8 2.2 18 136-153 41-58 (265)
119 d1wp9a2 c.37.1.19 (A:201-486) 76.0 7.7 0.00056 34.7 10.7 73 173-253 161-245 (286)
120 d1w36b1 c.37.1.19 (B:1-485) Ex 75.8 2 0.00015 41.9 7.0 60 137-196 17-79 (485)
121 d2p6ra4 c.37.1.19 (A:203-403) 75.5 3 0.00022 35.5 7.1 74 173-252 40-145 (201)
122 d2fnaa2 c.37.1.20 (A:1-283) Ar 75.5 0.43 3.1E-05 43.1 1.5 17 136-152 29-45 (283)
123 d1sgwa_ c.37.1.12 (A:) Putativ 74.6 1 7.3E-05 38.7 3.6 43 243-285 141-183 (200)
124 d1fnna2 c.37.1.20 (A:1-276) CD 74.6 0.69 5E-05 41.5 2.7 24 137-161 44-67 (276)
125 d1gvnb_ c.37.1.21 (B:) Plasmid 73.6 1 7.4E-05 40.4 3.7 16 138-153 34-49 (273)
126 d1wrba1 c.37.1.19 (A:164-401) 73.6 9.5 0.00069 33.1 10.3 74 344-421 98-182 (238)
127 d1o5za1 c.59.1.2 (A:294-430) F 72.7 0.97 7.1E-05 36.0 2.9 58 247-306 11-68 (137)
128 d1cr2a_ c.37.1.11 (A:) Gene 4 72.4 1.6 0.00012 39.2 4.8 41 133-181 32-72 (277)
129 d1ly1a_ c.37.1.1 (A:) Polynucl 72.2 0.78 5.7E-05 37.0 2.2 15 139-153 5-19 (152)
130 d2bdta1 c.37.1.25 (A:1-176) Hy 71.9 0.79 5.7E-05 37.7 2.2 16 138-153 4-19 (176)
131 d1n0wa_ c.37.1.11 (A:) DNA rep 71.6 1.6 0.00011 37.4 4.4 30 129-158 11-45 (242)
132 d1zp6a1 c.37.1.25 (A:6-181) Hy 71.2 0.89 6.5E-05 37.6 2.4 19 135-153 3-21 (176)
133 d1lw7a2 c.37.1.1 (A:220-411) T 71.0 0.73 5.3E-05 38.5 1.8 17 137-153 8-24 (192)
134 d1m8pa3 c.37.1.15 (A:391-573) 70.8 0.69 5E-05 38.4 1.5 20 134-153 4-23 (183)
135 d1qhxa_ c.37.1.3 (A:) Chloramp 70.2 0.95 6.9E-05 37.4 2.3 19 135-153 2-20 (178)
136 d3adka_ c.37.1.1 (A:) Adenylat 69.9 9.2 0.00067 31.7 9.0 22 133-154 5-26 (194)
137 d1zina1 c.37.1.1 (A:1-125,A:16 69.3 1.2 8.8E-05 37.1 2.9 18 137-154 1-18 (182)
138 d1viaa_ c.37.1.2 (A:) Shikimat 68.7 1.4 0.0001 36.1 3.1 17 137-153 1-17 (161)
139 d1byia_ c.37.1.10 (A:) Dethiob 68.6 1.9 0.00014 37.0 4.2 35 137-180 2-37 (224)
140 d1tf7a1 c.37.1.11 (A:14-255) C 67.9 1.3 9.8E-05 38.5 3.0 26 136-161 26-51 (242)
141 d1s3ga1 c.37.1.1 (A:1-125,A:16 67.6 1.4 0.0001 36.9 2.9 17 137-153 1-17 (182)
142 d1e4va1 c.37.1.1 (A:1-121,A:15 66.9 1.4 0.0001 36.6 2.8 17 137-153 1-17 (179)
143 d2cdna1 c.37.1.1 (A:1-181) Ade 66.7 1.5 0.00011 36.6 2.9 18 137-154 1-18 (181)
144 d1ak2a1 c.37.1.1 (A:14-146,A:1 66.6 1.6 0.00012 36.7 3.1 19 136-154 3-21 (190)
145 d1zaka1 c.37.1.1 (A:3-127,A:15 66.2 1.6 0.00012 36.6 3.1 18 137-154 4-21 (189)
146 d1ye8a1 c.37.1.11 (A:1-178) Hy 65.8 1.6 0.00011 36.1 2.9 42 243-285 97-138 (178)
147 d1pzna2 c.37.1.11 (A:96-349) D 64.4 2.2 0.00016 37.4 3.8 24 136-159 36-59 (254)
148 d1htwa_ c.37.1.18 (A:) Hypothe 64.4 1.3 9.8E-05 36.1 2.0 37 139-187 36-72 (158)
149 d1xjca_ c.37.1.10 (A:) Molybdo 63.7 4.3 0.00032 32.9 5.3 23 139-162 4-26 (165)
150 d1gkub2 c.37.1.16 (B:251-498) 63.4 5 0.00036 35.2 6.0 72 173-250 25-97 (248)
151 d1e6ca_ c.37.1.2 (A:) Shikimat 62.7 2.2 0.00016 35.1 3.1 18 137-154 3-20 (170)
152 d1wp9a1 c.37.1.19 (A:1-200) pu 62.7 37 0.0027 27.6 13.2 74 343-421 51-135 (200)
153 d1veca_ c.37.1.19 (A:) DEAD bo 62.6 10 0.00075 32.0 7.8 75 343-421 70-156 (206)
154 d1s2ma1 c.37.1.19 (A:46-251) P 62.5 9.4 0.00069 32.2 7.6 76 343-422 68-154 (206)
155 d1knqa_ c.37.1.17 (A:) Glucona 62.2 1.6 0.00012 35.7 2.2 15 139-153 9-23 (171)
156 d1qdea_ c.37.1.19 (A:) Initiat 62.2 2.9 0.00021 35.9 4.0 73 344-421 78-161 (212)
157 d1g8pa_ c.37.1.20 (A:) ATPase 62.1 1.3 9.1E-05 41.5 1.6 18 135-152 27-44 (333)
158 d2ak3a1 c.37.1.1 (A:0-124,A:16 61.9 2.2 0.00016 35.9 3.1 18 137-154 7-24 (189)
159 d1szpa2 c.37.1.11 (A:145-395) 61.6 1.9 0.00014 37.6 2.7 21 136-156 34-54 (251)
160 d1akya1 c.37.1.1 (A:3-130,A:16 60.0 2.3 0.00017 35.3 2.9 17 137-153 3-19 (180)
161 d1x6va3 c.37.1.4 (A:34-228) Ad 59.5 1.2 8.8E-05 37.5 0.9 17 137-153 20-36 (195)
162 d1ny5a2 c.37.1.20 (A:138-384) 59.0 3 0.00022 36.8 3.6 23 131-153 18-40 (247)
163 d1bg2a_ c.37.1.9 (A:) Kinesin 58.5 3.2 0.00024 38.3 3.9 25 129-153 67-93 (323)
164 d1v5wa_ c.37.1.11 (A:) Meiotic 58.3 3.4 0.00025 36.1 3.9 56 136-194 37-92 (258)
165 d1np6a_ c.37.1.10 (A:) Molybdo 57.2 5.3 0.00039 32.1 4.8 23 138-161 4-26 (170)
166 d2iyva1 c.37.1.2 (A:2-166) Shi 57.1 3 0.00022 34.0 3.0 17 138-154 3-19 (165)
167 d1a1va2 c.37.1.14 (A:326-624) 56.9 8 0.00058 34.6 6.0 38 173-212 36-73 (299)
168 d2gc6a1 c.59.1.2 (A:297-425) F 56.4 8.5 0.00062 29.5 5.6 112 248-364 13-127 (129)
169 d1yj5a2 c.37.1.1 (A:351-522) 5 55.8 2.4 0.00018 35.0 2.2 15 138-152 16-30 (172)
170 d2bmfa2 c.37.1.14 (A:178-482) 55.8 7.3 0.00053 35.0 5.9 55 173-229 178-232 (305)
171 d1khta_ c.37.1.1 (A:) Adenylat 55.7 2.5 0.00018 34.9 2.3 17 137-153 2-18 (190)
172 d1qf9a_ c.37.1.1 (A:) UMP/CMP 55.5 3 0.00022 35.0 2.8 16 138-153 8-23 (194)
173 d1ukza_ c.37.1.1 (A:) Uridylat 55.2 3.1 0.00023 35.0 2.9 16 138-153 10-25 (196)
174 d1v8ka_ c.37.1.9 (A:) Kinesin 54.5 3.9 0.00028 38.4 3.7 25 129-153 105-131 (362)
175 d2b2na1 c.37.1.19 (A:26-333) T 53.6 18 0.0013 32.7 8.2 87 343-429 13-118 (308)
176 d1teva_ c.37.1.1 (A:) UMP/CMP 53.4 3.5 0.00025 34.5 2.9 17 138-154 3-19 (194)
177 d2i1qa2 c.37.1.11 (A:65-322) D 52.7 3 0.00022 36.3 2.4 27 135-161 33-59 (258)
178 d1goja_ c.37.1.9 (A:) Kinesin 52.1 4.7 0.00034 37.7 3.8 26 128-153 70-97 (354)
179 d2a5yb3 c.37.1.20 (B:109-385) 52.0 32 0.0023 30.2 9.7 15 139-153 47-61 (277)
180 d1yrba1 c.37.1.10 (A:1-244) AT 51.3 5.5 0.0004 34.4 4.0 20 139-159 3-22 (244)
181 d2jdia3 c.37.1.11 (A:95-379) C 51.1 78 0.0056 27.7 12.3 23 132-154 64-86 (285)
182 d2zfia1 c.37.1.9 (A:4-352) Kin 50.7 5.1 0.00037 37.3 3.9 26 128-153 77-104 (349)
183 d2eyqa2 c.37.1.19 (A:349-465) 49.9 11 0.00077 28.6 5.0 73 331-417 23-96 (117)
184 d1x88a1 c.37.1.9 (A:18-362) Ki 49.6 4.9 0.00036 37.4 3.5 26 128-153 71-98 (345)
185 d1susa1 c.66.1.1 (A:21-247) Ca 49.3 51 0.0037 27.9 10.1 122 122-279 43-166 (227)
186 d1f9va_ c.37.1.9 (A:) Kinesin 47.8 5.8 0.00043 36.8 3.7 27 128-154 73-101 (342)
187 d2g9na1 c.37.1.19 (A:21-238) I 47.5 6 0.00044 33.9 3.5 75 344-421 80-165 (218)
188 d2ncda_ c.37.1.9 (A:) Kinesin 47.4 5.6 0.00041 37.3 3.6 26 128-153 115-142 (368)
189 d1sdma_ c.37.1.9 (A:) Kinesin 47.2 5.4 0.00039 37.4 3.4 25 129-153 66-92 (364)
190 d2b2na1 c.37.1.19 (A:26-333) T 46.9 21 0.0015 32.2 7.4 60 174-234 15-90 (308)
191 d1z5za1 c.37.1.19 (A:663-906) 46.5 30 0.0022 29.6 8.4 94 145-253 66-164 (244)
192 d1svma_ c.37.1.20 (A:) Papillo 46.2 7.6 0.00055 36.3 4.3 24 137-161 155-178 (362)
193 d1gkya_ c.37.1.1 (A:) Guanylat 45.7 4.7 0.00034 33.5 2.5 15 137-151 2-16 (186)
194 d1nksa_ c.37.1.1 (A:) Adenylat 44.8 4.4 0.00032 33.4 2.1 15 139-153 4-18 (194)
195 d1rz3a_ c.37.1.6 (A:) Hypothet 43.6 4.7 0.00034 33.4 2.1 15 139-153 25-39 (198)
196 d1lvga_ c.37.1.1 (A:) Guanylat 43.3 4.9 0.00036 33.6 2.2 15 138-152 2-16 (190)
197 d1znwa1 c.37.1.1 (A:20-201) Gu 42.1 5.6 0.0004 32.8 2.3 17 136-152 2-18 (182)
198 d1ys7a2 c.23.1.1 (A:7-127) Tra 41.6 62 0.0045 23.9 11.6 84 174-288 2-85 (121)
199 d1nija1 c.37.1.10 (A:2-223) Hy 41.1 11 0.00082 32.2 4.3 32 139-181 6-37 (222)
200 d1r6bx3 c.37.1.20 (X:437-751) 40.6 6.5 0.00047 36.0 2.7 16 138-153 54-69 (315)
201 d1w44a_ c.37.1.11 (A:) NTPase 40.4 5.2 0.00038 36.7 1.9 15 139-153 126-140 (321)
202 d2jdid3 c.37.1.11 (D:82-357) C 39.5 1.1E+02 0.0084 26.4 12.0 26 128-153 57-85 (276)
203 d1xpua3 c.37.1.11 (A:129-417) 39.5 10 0.00074 33.9 3.8 26 128-153 32-60 (289)
204 d1ihua1 c.37.1.10 (A:1-296) Ar 39.1 13 0.00098 32.9 4.8 34 138-180 10-43 (296)
205 d1q3ta_ c.37.1.1 (A:) CMP kina 39.1 8.1 0.00059 32.8 3.0 16 139-154 6-21 (223)
206 d1ckea_ c.37.1.1 (A:) CMP kina 39.0 7.7 0.00056 32.8 2.9 15 139-153 6-20 (225)
207 d1ihua2 c.37.1.10 (A:308-586) 39.0 14 0.001 32.6 4.8 21 139-159 23-43 (279)
208 d1uj2a_ c.37.1.6 (A:) Uridine- 38.8 6.3 0.00046 33.4 2.2 15 139-153 5-19 (213)
209 d1knxa2 c.91.1.2 (A:133-309) H 37.7 7.8 0.00057 31.9 2.5 20 135-154 14-33 (177)
210 d3b60a1 c.37.1.12 (A:329-581) 37.2 6.7 0.00049 34.5 2.1 19 133-151 38-56 (253)
211 d1gmxa_ c.46.1.3 (A:) Sulfurtr 37.2 19 0.0014 26.4 4.6 48 332-379 46-95 (108)
212 d1luaa1 c.2.1.7 (A:98-288) Met 37.1 36 0.0026 27.8 7.0 78 134-228 21-99 (191)
213 d1t5la1 c.37.1.19 (A:2-414) Nu 36.9 1.2E+02 0.0085 28.2 11.4 109 325-435 39-179 (413)
214 d1bifa1 c.37.1.7 (A:37-249) 6- 36.9 7 0.00051 32.8 2.2 15 139-153 5-19 (213)
215 d1tuea_ c.37.1.20 (A:) Replica 36.7 17 0.0012 30.5 4.5 50 108-160 23-76 (205)
216 d1jj7a_ c.37.1.12 (A:) Peptide 36.7 7.5 0.00055 34.2 2.3 18 134-151 38-55 (251)
217 d1z3ix1 c.37.1.19 (X:390-735) 36.5 77 0.0056 28.6 9.9 95 145-254 98-198 (346)
218 d2r25b1 c.23.1.1 (B:1087-1214) 36.4 47 0.0034 25.0 7.1 50 243-294 49-98 (128)
219 d1d0xa2 c.37.1.9 (A:2-33,A:80- 36.1 7.5 0.00054 40.0 2.6 60 102-162 83-150 (712)
220 d2qm8a1 c.37.1.10 (A:5-327) Me 35.5 78 0.0057 28.3 9.6 23 139-162 54-76 (323)
221 d1iy8a_ c.2.1.2 (A:) Levodione 35.5 97 0.0071 26.4 10.0 81 134-228 2-90 (258)
222 d1ry6a_ c.37.1.9 (A:) Kinesin 35.4 10 0.00073 34.8 3.2 19 135-153 82-102 (330)
223 d1qkka_ c.23.1.1 (A:) Transcri 35.3 86 0.0063 23.7 10.7 43 244-289 43-85 (140)
224 d1tq1a_ c.46.1.3 (A:) Thiosulf 35.2 14 0.0011 27.7 3.6 47 332-378 60-108 (119)
225 d1s96a_ c.37.1.1 (A:) Guanylat 35.0 8.6 0.00062 32.5 2.4 17 136-152 2-18 (205)
226 d1kkma_ c.91.1.2 (A:) HPr kina 34.5 9.7 0.00071 31.3 2.6 20 135-154 13-32 (176)
227 d1vi2a1 c.2.1.7 (A:107-288) Pu 34.5 16 0.0012 30.0 4.1 19 135-153 17-35 (182)
228 d1lkxa_ c.37.1.9 (A:) Myosin S 34.4 7.4 0.00054 39.8 2.2 54 107-161 50-110 (684)
229 d1krwa_ c.23.1.1 (A:) NTRC rec 34.1 83 0.0061 23.2 11.6 89 173-292 3-91 (123)
230 d1oywa2 c.37.1.19 (A:1-206) Re 33.6 1E+02 0.0073 24.9 9.6 77 342-418 63-146 (206)
231 d1ko7a2 c.91.1.2 (A:130-298) H 33.6 10 0.00075 30.9 2.5 19 135-153 14-32 (169)
232 d1kgda_ c.37.1.1 (A:) Guanylat 33.2 9 0.00066 31.5 2.2 16 137-152 4-19 (178)
233 d1r0wa_ c.37.1.12 (A:) Cystic 32.4 10 0.00076 33.8 2.6 17 135-151 61-77 (281)
234 d1qvra3 c.37.1.20 (A:536-850) 32.2 9.5 0.00069 34.8 2.3 16 138-153 55-70 (315)
235 d1l2ta_ c.37.1.12 (A:) MJ0796 32.0 9 0.00065 33.1 2.0 18 134-151 29-46 (230)
236 d1odfa_ c.37.1.6 (A:) Hypothet 32.0 23 0.0017 31.4 5.0 14 140-153 31-44 (286)
237 d1kk8a2 c.37.1.9 (A:1-28,A:77- 31.4 9.7 0.00071 39.6 2.5 59 103-162 80-146 (789)
238 d2vp4a1 c.37.1.1 (A:12-208) De 31.2 9.9 0.00072 31.5 2.2 14 139-152 12-25 (197)
239 d1mv5a_ c.37.1.12 (A:) Multidr 30.9 8.5 0.00062 33.6 1.7 25 133-157 25-49 (242)
240 d1o54a_ c.66.1.13 (A:) Hypothe 29.9 51 0.0037 28.6 7.0 42 325-366 178-219 (266)
241 d1xhfa1 c.23.1.1 (A:2-122) Aer 29.7 98 0.0072 22.7 13.3 89 173-293 2-90 (121)
242 d1br2a2 c.37.1.9 (A:80-789) My 29.4 9.8 0.00071 39.1 2.1 54 107-161 55-115 (710)
243 d1ye8a1 c.37.1.11 (A:1-178) Hy 29.3 85 0.0062 24.4 8.1 15 137-151 1-15 (178)
244 d3dhwc1 c.37.1.12 (C:1-240) Me 29.0 11 0.00077 32.8 1.9 18 134-151 29-46 (240)
245 d1qhla_ c.37.1.12 (A:) Cell di 28.5 5.5 0.0004 33.1 -0.1 13 139-151 27-39 (222)
246 d1w7ja2 c.37.1.9 (A:63-792) My 28.4 12 0.00087 38.6 2.6 55 107-162 58-119 (730)
247 d1uf9a_ c.37.1.1 (A:) Dephosph 27.9 12 0.00088 30.8 2.1 14 140-153 7-20 (191)
248 d2awna2 c.37.1.12 (A:4-235) Ma 27.5 15 0.0011 31.6 2.7 17 135-151 25-41 (232)
249 d3d31a2 c.37.1.12 (A:1-229) Su 26.7 14 0.001 31.7 2.4 17 135-151 25-41 (229)
250 d1v43a3 c.37.1.12 (A:7-245) Hy 26.5 13 0.00093 32.3 2.0 17 135-151 31-47 (239)
251 d1g2912 c.37.1.12 (1:1-240) Ma 26.3 16 0.0012 31.6 2.6 17 135-151 28-44 (240)
252 d1ji0a_ c.37.1.12 (A:) Branche 25.9 13 0.00094 32.3 1.9 18 135-152 31-48 (240)
253 g1f2t.1 c.37.1.12 (A:,B:) Rad5 25.5 17 0.0012 31.9 2.8 42 244-285 224-266 (292)
254 g1xew.1 c.37.1.12 (X:,Y:) Smc 25.4 14 0.001 33.3 2.3 14 139-152 29-42 (329)
255 d1vhta_ c.37.1.1 (A:) Dephosph 25.0 15 0.0011 30.9 2.2 15 139-153 6-20 (208)
256 d1fx0a3 c.37.1.11 (A:97-372) C 25.0 26 0.0019 30.9 3.9 22 133-154 64-85 (276)
257 d1u0ja_ c.37.1.20 (A:) Rep 40 24.8 54 0.0039 28.5 6.1 41 109-151 74-119 (267)
258 d1cp2a_ c.37.1.10 (A:) Nitroge 24.7 28 0.0021 30.2 4.2 22 139-160 4-25 (269)
259 d1sq5a_ c.37.1.6 (A:) Pantothe 24.2 30 0.0022 31.1 4.2 15 139-153 83-97 (308)
260 d1jjva_ c.37.1.1 (A:) Dephosph 24.0 16 0.0012 30.5 2.2 14 140-153 6-19 (205)
261 d2afhe1 c.37.1.10 (E:1-289) Ni 23.8 35 0.0025 30.0 4.7 32 139-179 5-36 (289)
262 d2fwra1 c.37.1.19 (A:257-456) 23.7 13 0.00093 31.0 1.4 71 173-256 93-167 (200)
263 d1nn5a_ c.37.1.1 (A:) Thymidyl 23.4 39 0.0029 28.1 4.7 16 138-153 5-20 (209)
264 d1oxxk2 c.37.1.12 (K:1-242) Gl 23.1 14 0.001 32.0 1.7 18 134-151 29-46 (242)
265 d2fh5b1 c.37.1.8 (B:63-269) Si 23.0 17 0.0012 30.2 2.2 15 137-151 1-15 (207)
266 d1yxma1 c.2.1.2 (A:7-303) Pero 22.8 2.2E+02 0.016 24.5 10.3 83 132-228 8-101 (297)
267 d1b0ua_ c.37.1.12 (A:) ATP-bin 22.7 16 0.0012 32.0 2.0 17 135-151 27-43 (258)
268 d1m7ga_ c.37.1.4 (A:) Adenosin 22.3 17 0.0012 30.6 2.0 17 137-153 25-41 (208)
269 d1gsia_ c.37.1.1 (A:) Thymidyl 21.9 38 0.0027 27.8 4.3 15 139-153 3-17 (208)
270 d1u0sy_ c.23.1.1 (Y:) CheY pro 21.7 1.4E+02 0.01 21.6 11.9 87 174-292 2-90 (118)
271 d1yt8a4 c.46.1.2 (A:243-372) T 21.6 40 0.0029 25.5 4.0 37 342-378 78-115 (130)
272 d1yioa2 c.23.1.1 (A:3-130) Res 21.6 1.4E+02 0.011 21.8 10.0 83 173-287 2-85 (128)
273 d2a9pa1 c.23.1.1 (A:2-118) DNA 21.6 1.4E+02 0.01 21.6 11.5 88 175-294 2-89 (117)
274 d1g3qa_ c.37.1.10 (A:) Cell di 21.6 36 0.0026 28.5 4.2 30 141-179 8-37 (237)
275 d2onka1 c.37.1.12 (A:1-240) Mo 21.2 25 0.0018 30.3 2.9 13 139-151 27-39 (240)
276 d1kgsa2 c.23.1.1 (A:2-123) Pho 21.1 1.4E+02 0.011 21.6 11.6 83 175-289 3-86 (122)
277 d4tmka_ c.37.1.1 (A:) Thymidyl 20.7 21 0.0016 29.7 2.3 18 136-153 2-19 (210)
278 d1e69a_ c.37.1.12 (A:) Smc hea 20.5 35 0.0025 30.1 4.0 43 243-285 239-281 (308)
No 1
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.4e-37 Score=289.27 Aligned_cols=204 Identities=35% Similarity=0.609 Sum_probs=188.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeE
Q 007085 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~ 176 (618)
...+|++++++++++++|++.+|..|||+|.++||.+++++|++++++||||||++|++|+++.+.. ....+++
T Consensus 15 ~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~------~~~~~~~ 88 (222)
T d2j0sa1 15 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQA 88 (222)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCE
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc------cccCcee
Confidence 3447999999999999999999999999999999999999999999999999999999999988743 2346789
Q ss_pred EEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 177 lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
+|++||++|+.|+++.+.++.. .+++.+++++.........+..+++|||+||++|.+++....+.+.+++++|+|||
T Consensus 89 lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEa 168 (222)
T d2j0sa1 89 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 168 (222)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecch
Confidence 9999999999999999998764 56778888999988888888889999999999999999999999999999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
|++++.+|...+..+++.+++.+|++++|||+++++.+++..++.+|..+.+
T Consensus 169 D~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V 220 (222)
T d2j0sa1 169 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220 (222)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECC
T ss_pred hHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999987754
No 2
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.2e-36 Score=282.53 Aligned_cols=201 Identities=35% Similarity=0.586 Sum_probs=184.2
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
..+|++++++++++++|++.+|..|||+|+++||.+++++|++++++||||||++|++|++..+.. ....+++|
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~------~~~~~~~l 75 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAM 75 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEE
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc------cccCcceE
Confidence 357999999999999999999999999999999999999999999999999999999999987643 23478899
Q ss_pred EEcCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
|++||++|+.|+++.+..+.. ........++.........+...++|||+||++|.+++....+.+.+++++|+|||
T Consensus 76 il~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEa 155 (206)
T d1veca_ 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEecc
Confidence 999999999999999887653 45566777788888888888889999999999999999999999999999999999
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEE
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i 304 (618)
|+|++.+|...+..+++.+++++|++++|||+++++.+++..++.+|..|
T Consensus 156 D~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ccccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999999999999765
No 3
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.1e-35 Score=276.08 Aligned_cols=200 Identities=30% Similarity=0.514 Sum_probs=179.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
.|++++++++++++|++.+|.+|||+|+++||.+++++|++++++||||||++|++|++..+.. ....++++|+
T Consensus 2 ~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~------~~~~~~~lil 75 (207)
T d1t6na_ 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLVM 75 (207)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEEE
T ss_pred CccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc------cCCCceEEEE
Confidence 5889999999999999999999999999999999999999999999999999999999987532 2346789999
Q ss_pred cCcHHHHHHHHHHHHHhCC---CCceEEEEcCCchHHHHHHh-hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 180 APTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
+||++|+.|+++.++.+.. .+...+++++.....+...+ +..++|||+||++|.+++.+..+.+.+++++|+||||
T Consensus 76 ~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD 155 (207)
T d1t6na_ 76 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 155 (207)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred eccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhh
Confidence 9999999999999988764 34567777888777666655 4568999999999999999988899999999999999
Q ss_pred hccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEE
Q 007085 256 QMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (618)
Q Consensus 256 ~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~ 305 (618)
++++. +|...+..+++.+++++|++++|||+++++.+++..++.+|..+.
T Consensus 156 ~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 156 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred hhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEe
Confidence 99974 788999999999999999999999999999999999999997764
No 4
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.3e-35 Score=277.43 Aligned_cols=206 Identities=33% Similarity=0.535 Sum_probs=179.4
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007085 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (618)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~ 174 (618)
+++..+|+++++++.++++|.+.+|..|||+|+++||.++.++|++++++||||||++|++|+++.+.. ....+
T Consensus 8 ~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~------~~~~~ 81 (218)
T d2g9na1 8 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKAT 81 (218)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSC
T ss_pred CCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc------cccCc
Confidence 445568999999999999999999999999999999999999999999999999999999999988743 23478
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCC--CceEEEEcCCchHHHH-HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM-RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
++||++||++|+.|+++.+.++... .....+.++....... ......++|||+||++|.+++.+....+.+++++|+
T Consensus 82 ~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVl 161 (218)
T d2g9na1 82 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 161 (218)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred cEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEe
Confidence 9999999999999999999987653 3444555444333322 223346899999999999999998899999999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||||++++.+|...+..+++.++.++|++++|||+++.+..+...++.+|..+.+
T Consensus 162 DEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v 216 (218)
T d2g9na1 162 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216 (218)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEEC
T ss_pred eecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999988764
No 5
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=9.5e-35 Score=272.23 Aligned_cols=203 Identities=33% Similarity=0.558 Sum_probs=175.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCe
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~ 175 (618)
+...+|++++++++++++|++.+|.+|||+|+++||.++.++|++++++||||||++|++|++..+.. ...+++
T Consensus 7 ~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~------~~~~~~ 80 (212)
T d1qdea_ 7 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQ 80 (212)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCC
T ss_pred ccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc------cCCCcc
Confidence 44568999999999999999999999999999999999999999999999999999999999998732 334789
Q ss_pred EEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 176 ~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
++|++||++|+.|.++.+..+.. .+....+.++.....+...+ ++++|+|+||+++.+++....+.+.+++++|+||
T Consensus 81 ~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDE 159 (212)
T d1qdea_ 81 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh-cCCcEEEECCCccccccccCceecCcceEEeehh
Confidence 99999999999999999988764 34455555555554444444 4689999999999999999999999999999999
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEE
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~ 305 (618)
||++++.+|...+..+++.+++.+|++++|||+++.+.++++.++.+|..+.
T Consensus 160 ad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 160 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred hhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999997764
No 6
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=2.1e-34 Score=269.92 Aligned_cols=200 Identities=38% Similarity=0.647 Sum_probs=179.5
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCC-CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~-~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
++|++++++++++++|++.+|.+|+|+|+++||.++.++ |++++++||+|||++|++|++..... ..++++|
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~-------~~~~~~l 76 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEAI 76 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCEE
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc-------ccCcceE
Confidence 478899999999999999999999999999999999874 89999999999999999999876432 4578999
Q ss_pred EEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
|+|||++|+.|+++.+.++.. ...+...++......+.+.+ .+++|||+||++|.+++.+..+.+.+++++||||||
T Consensus 77 il~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l-~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad 155 (208)
T d1hv8a1 77 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 155 (208)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc-CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChH
Confidence 999999999999999998764 45667777877777666655 468999999999999999988899999999999999
Q ss_pred hccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
++++.++...+..+++.+++++|++++|||+++++.+++..++.+|..++.
T Consensus 156 ~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 156 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred HhhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 999999999999999999999999999999999999999999998887754
No 7
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=100.00 E-value=2.6e-34 Score=274.26 Aligned_cols=213 Identities=35% Similarity=0.586 Sum_probs=187.7
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhh---hcCC
Q 007085 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE---KHGR 170 (618)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~---~~~~ 170 (618)
.+.+..+|++++++++++++|.+.+|..|+|+|.++||.+++++|++++++||||||++|++|++..+..... ....
T Consensus 16 ~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~ 95 (238)
T d1wrba1 16 ATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 95 (238)
T ss_dssp CCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred CCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccC
Confidence 3445678999999999999999999999999999999999999999999999999999999999999875322 1223
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 171 ~~~~~~lil~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
...+++||++||++|+.|+++++..+.. .+++..+.++.....+.+.....++|||+||++|.+++....+.+.++++
T Consensus 96 ~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~ 175 (238)
T d1wrba1 96 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175 (238)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred CCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccce
Confidence 3468999999999999999999887654 46677788888888787888888999999999999999998899999999
Q ss_pred EEEccchhccCCCcHHHHHHHHHHCC----CCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 249 VVLDEADQMLSVGFAEDVEVILERLP----QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 249 vViDEaH~~~~~~~~~~~~~il~~l~----~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
+|+||||++++.+|...+..+++.+. .++|++++|||+++.+..++..++.+|..+.+
T Consensus 176 lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 176 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999764 25799999999999999999999999877753
No 8
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=9.2e-34 Score=265.43 Aligned_cols=201 Identities=35% Similarity=0.589 Sum_probs=185.7
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+|+++++++.++++|++.+|..|||+|+++||.+++++|++++++||||||++|++|++..+.. .....+++++
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~------~~~~~~~~~~ 75 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQALIM 75 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEEEE
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccc------ccccccceee
Confidence 6889999999999999999999999999999999999999999999999999999999987643 2346789999
Q ss_pred cCcHHHHHHHHHHHHHhCC--CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
+|+.+++.|....+..... .+++...+++.........+...++|||+||++|.+++....+.+.+++++|+||||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l 155 (206)
T d1s2ma1 76 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 155 (206)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred ccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhh
Confidence 9999999999988877653 56778888999988888888899999999999999999999899999999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
++.+|...+..+++.+++.+|++++|||+++.+.+++..++.+|..+++
T Consensus 156 ~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~ 204 (206)
T d1s2ma1 156 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 204 (206)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESC
T ss_pred hhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999988865
No 9
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=100.00 E-value=3.8e-33 Score=279.38 Aligned_cols=273 Identities=18% Similarity=0.185 Sum_probs=187.2
Q ss_pred HHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCch
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~ 211 (618)
++.+++++||.+|||||||++|+++++...... +.++||++||++|++|++++++++........
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--------~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~------- 69 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--------GLRTLILAPTRVVAAEMEEALRGLPIRYQTPA------- 69 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--------TCCEEEEESSHHHHHHHHHHTTTSCCBCCC---------
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc--------CCEEEEEccHHHHHHHHHHHHhcCCcceeeeE-------
Confidence 355778999999999999998988887665441 56799999999999999999887643222111
Q ss_pred HHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC--CCCCcEEEEEeeCchH
Q 007085 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPW 289 (618)
Q Consensus 212 ~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l--~~~~~~l~lSAT~~~~ 289 (618)
..........|+++|++.|...+.. ...+.++++|||||+|++..+.+ .+..++..+ ....+++++|||++..
T Consensus 70 --~~~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~~~--~~~~~l~~~~~~~~~~~v~~SAT~~~~ 144 (305)
T d2bmfa2 70 --IRAEHTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPASI--AARGYISTRVEMGEAAGIFMTATPPGS 144 (305)
T ss_dssp --------CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHHHH--HHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred --EeecccCccccccCCcHHHHHHHhc-CccccceeEEEeeeeeecchhhH--HHHHHHHHhhccccceEEEeecCCCcc
Confidence 1112234568999999988776554 34578999999999998865422 222233322 3578999999999763
Q ss_pred HHHHHHHhcCCCcEEEeccCCcccccCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cC
Q 007085 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SY 368 (618)
Q Consensus 290 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~ 368 (618)
..... ........ .........+...+..+ ....+++||||+++++++.+++.|.+ .+
T Consensus 145 ~~~~~---~~~~~~~~---------------~~~~~~~~~~~~~~~~~---~~~~~~~lvf~~~~~~~~~l~~~L~~~~~ 203 (305)
T d2bmfa2 145 RDPFP---QSNAPIMD---------------EEREIPERSWNSGHEWV---TDFKGKTVWFVPSIKAGNDIAACLRKNGK 203 (305)
T ss_dssp CCSSC---CCSSCEEE---------------EECCCCCSCCSSCCHHH---HSSCSCEEEECSCHHHHHHHHHHHHHHTC
T ss_pred eeeec---ccCCcceE---------------EEEeccHHHHHHHHHHH---HhhCCCEEEEeccHHHHHHHHHHHHhCCC
Confidence 21100 00000110 00111111111111111 22467899999999999999999976 48
Q ss_pred CeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEE----------cCC----------CCChhHHH
Q 007085 369 NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIH----------YEL----------PNTSETFV 428 (618)
Q Consensus 369 ~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~----------~~~----------p~~~~~~~ 428 (618)
.+..+|+++.+.. ...|+++..+++|||+++++|+|+ ++++||+ ++. |.+..+|+
T Consensus 204 ~~~~l~~~~~~~~----~~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 278 (305)
T d2bmfa2 204 KVIQLSRKTFDSE----YIKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAA 278 (305)
T ss_dssp CCEECCTTCHHHH----GGGGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHH
T ss_pred CEEEeCCcChHHH----HhhhhccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHh
Confidence 8999999986554 346789999999999999999999 5666553 333 45788999
Q ss_pred HHhccCCCCCCcceEEEEechh
Q 007085 429 HRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 429 Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
||+||+||.++.+...+++...
T Consensus 279 Qr~GR~GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 279 QRRGRVGRNPKNENDQYIYMGE 300 (305)
T ss_dssp HHHTTSSCSSSCCCEEEEECSC
T ss_pred hhhcCcCcCCCCceEEEEECCC
Confidence 9999999999888877776543
No 10
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=2.6e-32 Score=256.81 Aligned_cols=201 Identities=34% Similarity=0.592 Sum_probs=176.8
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+|+++++++.++++|++.+|.+|||+|+++||.+++++|+++++|||||||++|++|+++.+.. .......+++
T Consensus 2 ~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~------~~~~~~~~~~ 75 (209)
T d1q0ua_ 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVIT 75 (209)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEEE
T ss_pred ccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccc------cccccccccc
Confidence 5889999999999999999999999999999999999999999999999999999999887643 2346789999
Q ss_pred cCcHHHHHHHHHHHHHhCC------CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 180 APTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
+|+..++.+.++.+..... .....++.+......+......+++|+|+||+++..++.+....+.+++++|+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDE 155 (209)
T d1q0ua_ 76 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 155 (209)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred ccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEee
Confidence 9999999999888765432 2334555555555555555667799999999999999998888899999999999
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
||++++++|...+..++..+++++|++++|||+|+++.++++.++.+|..+.+
T Consensus 156 ad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 156 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred cccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999988764
No 11
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.95 E-value=1.5e-27 Score=212.63 Aligned_cols=154 Identities=29% Similarity=0.542 Sum_probs=135.2
Q ss_pred EEEEEec-cCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccE
Q 007085 319 SLYSIAT-SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (618)
Q Consensus 319 ~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~v 396 (618)
.++++.+ ..+.|.+.+..+++.. +..++||||+++..++.+++.|.+ .+.+..+|+++++.+|.++++.|+.++.+|
T Consensus 2 ~q~~~~v~~~e~K~~~L~~ll~~~-~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 2 KQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp EEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred EEEEEEeCCcHHHHHHHHHHHHhC-CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccce
Confidence 3444444 4455888999988876 557999999999999999999966 489999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 397 LVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
||||+++++|+|+|++++||+||+|++++.|+||+||++|.|+.|.|++++++.|...+..+++.++..++++|...
T Consensus 81 Lv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~~~ 157 (162)
T d1fuka_ 81 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 157 (162)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred eeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887743
No 12
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.95 E-value=4.5e-27 Score=212.11 Aligned_cols=158 Identities=27% Similarity=0.551 Sum_probs=147.0
Q ss_pred cCCeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCC
Q 007085 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
...+.++++.++...|...|.++++.. +..++||||++++.++.++..|.. .+.+..+|+++++.+|..++..|++++
T Consensus 4 l~~i~q~yi~v~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~ 82 (171)
T d1s2ma2 4 LKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 82 (171)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccceEEEEEEcCHHHHHHHHHHHHHhC-CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCc
Confidence 355778888888888999999999876 567999999999999999999976 599999999999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCccc
Q 007085 394 FNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 394 ~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
.++||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+++.++.+++++|...
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~~ 162 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 162 (171)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred cccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888654
No 13
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=5.1e-27 Score=210.19 Aligned_cols=156 Identities=37% Similarity=0.633 Sum_probs=141.7
Q ss_pred cCCeEEEEEeccC-CcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcC
Q 007085 315 ADGISLYSIATSM-YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG 392 (618)
Q Consensus 315 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g 392 (618)
...+.++++.++. ..|...|..+++.. ...++||||++++.++.+++.|... +.+..+|+++++.+|..+++.|+++
T Consensus 5 l~~i~q~~v~v~~~~~K~~~L~~ll~~~-~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g 83 (168)
T d2j0sa2 5 LEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 83 (168)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEecChHHHHHHHHHHHHhC-CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC
Confidence 3556666666554 45889999888776 4569999999999999999999654 8999999999999999999999999
Q ss_pred CccEEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccCCc
Q 007085 393 RFNILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQLPR 471 (618)
Q Consensus 393 ~~~vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 471 (618)
+.++||||+++++|+|+|++++||+||+|++++.|+||+||+||.|++|.+++++.+.+...++.+++.++..++++|.
T Consensus 84 ~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p~ 162 (168)
T d2j0sa2 84 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 162 (168)
T ss_dssp SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887764
No 14
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.95 E-value=3.4e-28 Score=231.07 Aligned_cols=228 Identities=18% Similarity=0.177 Sum_probs=173.4
Q ss_pred CCCCCCCCccccccCCccccccccccCCcCccchhHHhhhhhccccccccCCCCCCCCCCccCCCCCHHHHHHHHHcCCC
Q 007085 41 GPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGIS 120 (618)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 120 (618)
..+++...|+..+|+|++.+.+..+++++.|+|....|.......+........ .+....++.+.+.+...+
T Consensus 11 ~~l~s~~~Al~~IH~P~~~~~l~~Ar~RL~fdEl~~~qL~l~~~k~~~~~~~~~--------~~~~~~~l~~~f~~~LPF 82 (264)
T d1gm5a3 11 RKLLGVKDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGI--------PKKIEGKLAEEFIKSLPF 82 (264)
T ss_dssp HCCCCSHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCTHHHHHHHHHSSS
T ss_pred cCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--------ccCCChHHHHHHHhhccc
Confidence 347788999999999999999999999999999877765533322222211111 234456677777777777
Q ss_pred CChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+||+.|++|+..|.+. ++.|++++||||||.+|+.+++..+.+ +.++++++||..|+.|+++.++
T Consensus 83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---------g~q~~~m~Pt~~La~Qh~~~~~ 153 (264)
T d1gm5a3 83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSILAIQHYRRTV 153 (264)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECSCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---------ccceeEEeehHhhhHHHHHHHH
Confidence 8999999999998642 578999999999999999999988877 7899999999999999999999
Q ss_pred HhCCC--CceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHH
Q 007085 195 ESAPS--LDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (618)
Q Consensus 195 ~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~ 268 (618)
++++. +.+.+++++.+..++.+.+. ..++|||+|+..+.+ .+.+.++++|||||.|++ ....+.
T Consensus 154 ~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~-----~~~f~~LglviiDEqH~f-----gv~Qr~ 223 (264)
T d1gm5a3 154 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF-----GVKQRE 223 (264)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------C
T ss_pred HhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcC-----CCCccccceeeecccccc-----chhhHH
Confidence 99874 56677778777665544333 359999999766553 455789999999999995 333343
Q ss_pred HHHHCCCCCcEEEEEeeCchHHHHHHH
Q 007085 269 ILERLPQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 269 il~~l~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
.+.....++++|+|||||.+....+..
T Consensus 224 ~l~~~~~~~~~l~~SATPiprtl~~~~ 250 (264)
T d1gm5a3 224 ALMNKGKMVDTLVMSATPIPRSMALAF 250 (264)
T ss_dssp CCCSSSSCCCEEEEESSCCCHHHHHHH
T ss_pred HHHHhCcCCCEEEEECCCCHHHHHHHH
Confidence 344444578999999999996655543
No 15
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.94 E-value=1.3e-26 Score=205.48 Aligned_cols=151 Identities=38% Similarity=0.646 Sum_probs=139.2
Q ss_pred CeEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCcc
Q 007085 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 395 (618)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~ 395 (618)
++++.++.++...|.+.|..+++. .+.++||||++++.++.+++.|.+. +.+..+|+++++.+|..++++|++++.+
T Consensus 3 nI~~~~i~v~~~~K~~~L~~ll~~--~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 80 (155)
T d1hv8a2 3 NIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 80 (155)
T ss_dssp SSEEEEEECCGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred CeEEEEEEeChHHHHHHHHHHHcc--CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce
Confidence 466777777888899999888875 3568999999999999999999764 8999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcccC
Q 007085 396 ILIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFTQL 469 (618)
Q Consensus 396 vLVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 469 (618)
|||||+++++|||+|++++||+||+|+++..|+||+||++|.|+++.+++++++.|...++.+++.++.+++++
T Consensus 81 ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~i~~l 154 (155)
T d1hv8a2 81 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154 (155)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred eeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877664
No 16
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=6.2e-26 Score=203.45 Aligned_cols=155 Identities=25% Similarity=0.471 Sum_probs=139.5
Q ss_pred eEEEEEeccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccE
Q 007085 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~v 396 (618)
+.++++.+....|.+.|.++++.. +..++||||++++.++.+++.|.+. +++..+||+|++++|..+++.|++|+.+|
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~-~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~i 80 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 80 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhC-CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccccee
Confidence 456778888889999999999887 4568999999999999999999654 89999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechh-hHHHHHHHHHHhcCCcccCCccc
Q 007085 397 LIATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQ-QARQVKSIERDVGCRFTQLPRIA 473 (618)
Q Consensus 397 LVaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~ 473 (618)
||||+++++|+|+|.+++||+|++|+++..|+||+||+||.|+++.|++++++. +...+..+++.++..+.++|...
T Consensus 81 Lv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~~ 158 (168)
T d1t5ia_ 81 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158 (168)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred eeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCchh
Confidence 999999999999999999999999999999999999999999999999998775 56677889999998888876543
No 17
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=8.9e-26 Score=202.25 Aligned_cols=155 Identities=32% Similarity=0.533 Sum_probs=134.9
Q ss_pred CCeEEEEEecc-CCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCC
Q 007085 316 DGISLYSIATS-MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR 393 (618)
Q Consensus 316 ~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~ 393 (618)
..+.++++.++ ...|...+..+++.. ...++||||++++.++.++..|.+. +++..+|++|++.+|.++++.|++|+
T Consensus 4 ~~ikq~y~~~~~~~~K~~~L~~ll~~~-~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~ 82 (168)
T d2rb4a1 4 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 82 (168)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cccEEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCCc
Confidence 45566666554 456778888888654 5679999999999999999999765 89999999999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCccEEEEcCCCC------ChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHHHhcCCcc
Q 007085 394 FNILIATDVAARGLDVPNVDLIIHYELPN------TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIERDVGCRFT 467 (618)
Q Consensus 394 ~~vLVaT~~~~~GlDi~~~~~VI~~~~p~------~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 467 (618)
.++||||+++++|+|+|++++||+||+|+ ++++|+||+||++|.|++|.|++|+++.+...+..|++.++..++
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~l~~i~~~~~~~i~ 162 (168)
T d2rb4a1 83 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 162 (168)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred eeeeechhhhhhhhccccccEEEeecCCCcccccCCHHHHHHHhhhcccCCCceEEEEEEcHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999998 578999999999999999999999999999999999999999888
Q ss_pred cCCc
Q 007085 468 QLPR 471 (618)
Q Consensus 468 ~~~~ 471 (618)
+++.
T Consensus 163 el~~ 166 (168)
T d2rb4a1 163 QLNA 166 (168)
T ss_dssp EECS
T ss_pred cCCC
Confidence 7663
No 18
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.93 E-value=1.9e-26 Score=215.14 Aligned_cols=185 Identities=25% Similarity=0.314 Sum_probs=143.9
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
+++.++..|+++++.+|+|+|+++++.+++++++++++|||+|||++++++++..+.+ ..++|+++|+++|
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~---------~~~vl~l~P~~~L 80 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSLYVVPLRAL 80 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEEEEESSHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc---------cCcceeecccHHH
Confidence 5778888999999999999999999999999999999999999999999998877654 5689999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEE-cCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHH
Q 007085 186 AKQVEKEFHESAPSLDTICVY-GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (618)
Q Consensus 186 a~q~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~ 264 (618)
+.|++++++++++....+... +..... ......+.|+++||..+...+......+.++++||+||+|++.+..+..
T Consensus 81 ~~q~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~ 157 (202)
T d2p6ra3 81 AGEKYESFKKWEKIGLRIGISTGDYESR---DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGA 157 (202)
T ss_dssp HHHHHHHHTTTTTTTCCEEEECSSCBCC---SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHH
T ss_pred HHHHHHHHHHHhhccccceeeccCcccc---cccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccch
Confidence 999999999887644444333 333221 1222457999999999999888877778899999999999998876665
Q ss_pred HHHHHHH---HCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEE
Q 007085 265 DVEVILE---RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (618)
Q Consensus 265 ~~~~il~---~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i 304 (618)
.+..++. ..++++|+|+||||+++ .+. +..|+..+..+
T Consensus 158 ~~~~~l~~i~~~~~~~~~l~lSATl~n-~~~-~~~~l~~~~~~ 198 (202)
T d2p6ra3 158 TLEILVTKMRRMNKALRVIGLSATAPN-VTE-IAEWLDADYYV 198 (202)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCTT-HHH-HHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCCc-HHH-HHHHcCCCeee
Confidence 5555544 44678999999999976 344 44666444433
No 19
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=1e-24 Score=200.44 Aligned_cols=134 Identities=19% Similarity=0.447 Sum_probs=122.1
Q ss_pred ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcc
Q 007085 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 325 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
.+...|.+.+..+++.. +..++||||++++.++.+++.|.. .+.+..+|+++++++|.++++.|++++.+|||||+++
T Consensus 12 ~~~~~k~~~L~~~l~~~-~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~ 90 (200)
T d1oywa3 12 MEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 90 (200)
T ss_dssp EECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS
T ss_pred EcCCcHHHHHHHHHHhc-CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchh
Confidence 44456777788887765 456899999999999999999976 4899999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHH
Q 007085 404 ARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIE 459 (618)
Q Consensus 404 ~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 459 (618)
++|||+|++++||||++|.++.+|+||+||+||.|++|.|++|+.+.|...++.+.
T Consensus 91 ~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i 146 (200)
T d1oywa3 91 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 146 (200)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred hhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998887776553
No 20
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=1.3e-24 Score=203.21 Aligned_cols=187 Identities=20% Similarity=0.263 Sum_probs=141.2
Q ss_pred ccCCCCCHHHHHHHHHc-CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 101 ISKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 101 ~~~~~l~~~l~~~l~~~-~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
.+.++|++.+.+.|++. ++..++|+|.++++++++++|+++++|||+|||++|.+|++.. ..+++++
T Consensus 4 ~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~------------~~~~~~v 71 (206)
T d1oywa2 4 AEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVVV 71 (206)
T ss_dssp CCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEEE
T ss_pred hhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc------------cCceEEe
Confidence 45678888899999875 9999999999999999999999999999999999999887643 4579999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH----HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccch
Q 007085 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPIS----HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (618)
Q Consensus 180 ~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH 255 (618)
+|+++|++|+.++++.... ............ ...........|+++|+..+............++++||+||+|
T Consensus 72 ~P~~~L~~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH 149 (206)
T d1oywa2 72 SPLISLMKDQVDQLQANGV--AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (206)
T ss_dssp CSCHHHHHHHHHHHHHTTC--CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred ccchhhhhhHHHHHHhhcc--cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeee
Confidence 9999999999999988753 223322222222 1222333568999999999865444444557789999999999
Q ss_pred hccCCCcH-----HHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh--cCCCc
Q 007085 256 QMLSVGFA-----EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPL 302 (618)
Q Consensus 256 ~~~~~~~~-----~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~--l~~~~ 302 (618)
++.+++.. ..+..++..+ +++|+++||||+++.+++.+... +.+|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 150 CISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeeccccchHHHHHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 98876532 1233444455 57899999999999887644443 56663
No 21
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.91 E-value=1.7e-24 Score=207.09 Aligned_cols=167 Identities=20% Similarity=0.201 Sum_probs=123.5
Q ss_pred HHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
+.+.++.+.+|+++|+++++.++.++++++++|||+|||++++++++..+.+ +.++|||+||++|++|+++
T Consensus 34 ~~~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~---------~~rvliv~Pt~~La~Q~~~ 104 (237)
T d1gkub1 34 VEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---------GKRCYVIFPTSLLVIQAAE 104 (237)
T ss_dssp HHHHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT---------SCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh---------cCeEEEEeccHHHHHHHHH
Confidence 3344557889999999999999999999999999999999999888766533 5689999999999999999
Q ss_pred HHHHhCCCCc------eEEEEcCCchHHHHHHhh--cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcH
Q 007085 192 EFHESAPSLD------TICVYGGTPISHQMRALD--YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (618)
Q Consensus 192 ~l~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~ 263 (618)
++++++.... .....+......+...+. ..++|+|+||++|.+. ...+.++++|||||+|.+++..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~~~~~~vVvDE~d~~l~~~-- 178 (237)
T d1gkub1 105 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH----YRELGHFDFIFVDDVDAILKAS-- 178 (237)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHC----STTSCCCSEEEESCHHHHHTST--
T ss_pred HHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHh----hhhcCCCCEEEEEChhhhhhcc--
Confidence 9998765332 122233333333333333 4589999999987653 3347789999999999987753
Q ss_pred HHHHHHHHHC-------------CCCCcEEEEEeeCchHHHHH
Q 007085 264 EDVEVILERL-------------PQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 264 ~~~~~il~~l-------------~~~~~~l~lSAT~~~~~~~~ 293 (618)
..+..++..+ +...|++++|||+++..+..
T Consensus 179 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 221 (237)
T d1gkub1 179 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAE 221 (237)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHH
T ss_pred cchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHH
Confidence 3333333332 35678999999998755443
No 22
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.90 E-value=2e-23 Score=184.21 Aligned_cols=123 Identities=20% Similarity=0.385 Sum_probs=107.5
Q ss_pred chHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCC
Q 007085 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (618)
Q Consensus 330 ~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlD 408 (618)
..+++..+.+...++.++||||++++.++.++++|.+. +++..+||+|++.+|++++++|++|+++|||||+++++|||
T Consensus 17 v~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiD 96 (174)
T d1c4oa2 17 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLD 96 (174)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeecc
Confidence 34566666666667889999999999999999999765 99999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC-----ChhHHHHHhccCCCCCCcceEEEEechhhHH
Q 007085 409 VPNVDLIIHYELPN-----TSETFVHRTGRTGRAGKKGSAILIYTDQQAR 453 (618)
Q Consensus 409 i~~~~~VI~~~~p~-----~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 453 (618)
+|++++||+|++|. +.++|+|++||++|.++ +.++++.......
T Consensus 97 ip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~ 145 (174)
T d1c4oa2 97 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEA 145 (174)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHH
Confidence 99999999999775 56889999999999865 6766666654433
No 23
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.90 E-value=1.2e-22 Score=188.88 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=128.4
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC-
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~- 198 (618)
.+|++||.++++.+.. +|+|+++|||+|||+++++++...+.+ .+.++||++|+++|++||++++.+++.
T Consensus 8 ~~pr~~Q~~~~~~~~~-~n~lv~~pTGsGKT~i~~~~~~~~~~~--------~~~~il~i~P~~~L~~q~~~~~~~~~~~ 78 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (200)
T ss_dssp HCCCHHHHHHHHHGGG-SCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CCCCHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHHHh--------cCCcEEEEcCchHHHHHHHHHHHHhhcc
Confidence 3599999999998864 689999999999999988877666543 145799999999999999999999875
Q ss_pred -CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
...+...+++.....+...+ ....|+++||+.+...+....+.+.++++||+||||++........+...+.....++
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~-~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 157 (200)
T d1wp9a1 79 PPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (200)
T ss_dssp CGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred cccceeeeecccchhHHHHhh-hcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCC
Confidence 34455555555555544433 3468999999999999988888889999999999999877654555555555556678
Q ss_pred cEEEEEeeCchHHHHH
Q 007085 278 QSMMFSATMPPWIRSL 293 (618)
Q Consensus 278 ~~l~lSAT~~~~~~~~ 293 (618)
++++|||||......+
T Consensus 158 ~~l~~SATp~~~~~~~ 173 (200)
T d1wp9a1 158 LVIGLTASPGSTPEKI 173 (200)
T ss_dssp CEEEEESCSCSSHHHH
T ss_pred cEEEEEecCCCcHHHH
Confidence 9999999986544443
No 24
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=2.3e-22 Score=186.91 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=138.5
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC------CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEE
Q 007085 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (618)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~l 177 (618)
+..+.+..+.+...-++.+|+-|..++..+.+. ++.|++++||||||.+|+.+++..+.+ +.+++
T Consensus 38 ~~~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~---------g~qv~ 108 (233)
T d2eyqa3 38 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQVA 108 (233)
T ss_dssp CCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEEE
T ss_pred CCCCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCceE
Confidence 455678888888888888999999999887642 578999999999999999999888754 88999
Q ss_pred EEcCcHHHHHHHHHHHHHhCCCC--ceEEEEcCCchHHHHHH----hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEE
Q 007085 178 VLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 178 il~Pt~~La~q~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
+++||..|+.|+++.++++++.+ .+.++++..+...+... .....+|||+|+..+. ..+.+.++.+|||
T Consensus 109 ~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~-----~~~~f~~LgLiIi 183 (233)
T d2eyqa3 109 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 183 (233)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc-----cCCccccccceee
Confidence 99999999999999999988754 56667777775554333 2345899999966655 3456899999999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHH
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~ 295 (618)
||.|++ ....++.+.....++++|++||||.+....+..
T Consensus 184 DEeH~f-----g~kQ~~~l~~~~~~~~~l~~SATPiprtl~~~~ 222 (233)
T d2eyqa3 184 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAM 222 (233)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHH
T ss_pred echhhh-----hhHHHHHHHhhCCCCCEEEEecchhHHHHHHHH
Confidence 999994 444455555556789999999999997655544
No 25
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.89 E-value=1.4e-22 Score=182.08 Aligned_cols=117 Identities=21% Similarity=0.448 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi 409 (618)
.+++..+.+...++.++||||+++..++.+++.|.+. +++..+||+|++.+|.++++.|++|+++|||||+++++|||+
T Consensus 18 d~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDi 97 (181)
T d1t5la2 18 DDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDI 97 (181)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCC
T ss_pred HHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCC
Confidence 4456666555566789999999999999999999764 999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCC-----ChhHHHHHhccCCCCCCcceEEEEec
Q 007085 410 PNVDLIIHYELPN-----TSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 410 ~~~~~VI~~~~p~-----~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|++++||+||+|. +..+|+||+||+||.|.. .+++++.
T Consensus 98 p~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~-~~~~~~~ 140 (181)
T d1t5la2 98 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG-HVIMYAD 140 (181)
T ss_dssp TTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC-EEEEECS
T ss_pred CCCCEEEEecCCcccccccHHHHHHHHHhhccccCc-eeEeecc
Confidence 9999999999995 689999999999998864 4444443
No 26
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=4.1e-20 Score=166.30 Aligned_cols=122 Identities=21% Similarity=0.383 Sum_probs=111.7
Q ss_pred cchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc---CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcccc
Q 007085 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (618)
Q Consensus 329 ~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~ 405 (618)
++..+...+..+...++++.++||.++.++.+++.+.+. +++.++||.|++++++++|.+|.+|+++|||||+++++
T Consensus 16 ~~~~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEv 95 (211)
T d2eyqa5 16 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 95 (211)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGG
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhh
Confidence 344566667778888999999999999999999998764 67899999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcceEEEEechh
Q 007085 406 GLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQ 450 (618)
Q Consensus 406 GlDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 450 (618)
|||+|+++++|+.+++. .+.+++|.+||+||.++.++|++++.+.
T Consensus 96 GiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 96 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEecCC
Confidence 99999999999999997 9999999999999999999999998653
No 27
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.83 E-value=5.7e-22 Score=180.88 Aligned_cols=130 Identities=22% Similarity=0.464 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHH--------HHHHHh----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEE
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRL--------AHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l--------~~~L~~----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLV 398 (618)
..++..+.++..+++++.|+||.+++.+.+ ++.|.+ .+++..+||+|++++|++++++|++|+++|||
T Consensus 16 ~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLV 95 (206)
T d1gm5a4 16 NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILV 95 (206)
T ss_dssp HHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEE
Confidence 445555666677889999999988766543 333332 35688899999999999999999999999999
Q ss_pred EcCccccCCCCCCccEEEEcCCCC-ChhHHHHHhccCCCCCCcceEEEEechhhHHHHHHHHH
Q 007085 399 ATDVAARGLDVPNVDLIIHYELPN-TSETFVHRTGRTGRAGKKGSAILIYTDQQARQVKSIER 460 (618)
Q Consensus 399 aT~~~~~GlDi~~~~~VI~~~~p~-~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 460 (618)
||+++++|||+|++++||++++|. .+++++|++||+||.+++++|++++.+.+....+.++.
T Consensus 96 aTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~~ 158 (206)
T d1gm5a4 96 STTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRF 158 (206)
T ss_dssp CSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHH
T ss_pred EehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhhh
Confidence 999999999999999999999997 89999999999999999999999998776655555543
No 28
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.78 E-value=1.2e-19 Score=155.05 Aligned_cols=99 Identities=26% Similarity=0.434 Sum_probs=87.8
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcC--
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYE-- 419 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~-- 419 (618)
+.+++||||++++.|+.|++.|.+ .+.+..+|++|++++ |++++.+|||||+++++||| ++++.|||++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~ 105 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPTNGDVVVVATDALMTGFT-GDFDSVIDCNTS 105 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTTSSCEEEEESSSSCSSSC-CCBSEEEECSEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhhhhcceeehhHHHHhccc-cccceEEEEEec
Confidence 567999999999999999999965 589999999998654 67899999999999999999 8999999855
Q ss_pred --CCCChhHHHHHhccCCCCCCcceEEEEechhh
Q 007085 420 --LPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 420 --~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
+|.+++.|+||+||+|| |++|. ++|+.+.|
T Consensus 106 ~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 106 DGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp TTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred CCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 89995 66776654
No 29
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.78 E-value=8.3e-19 Score=162.76 Aligned_cols=138 Identities=17% Similarity=0.106 Sum_probs=103.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
.+|++||+++++.++++++.++.+|||+|||++++..+. .+ ..++|||||+++|++||.++++++.+.
T Consensus 69 ~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~-----------~~~~Liv~p~~~L~~q~~~~~~~~~~~ 136 (206)
T d2fz4a1 69 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-EL-----------STPTLIVVPTLALAEQWKERLGIFGEE 136 (206)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH-HS-----------CSCEEEEESSHHHHHHHHHHHGGGCGG
T ss_pred CCcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHH-Hh-----------cCceeEEEcccchHHHHHHHHHhhccc
Confidence 359999999999999998999999999999987754332 21 457999999999999999999887542
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcE
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~ 279 (618)
.+....+.. ....+|+|+|++.+....... ..++++||+||||++... .+..++..+ +...+
T Consensus 137 --~~~~~~~~~--------~~~~~i~i~t~~~~~~~~~~~---~~~~~lvIiDEaH~~~a~----~~~~i~~~~-~~~~~ 198 (206)
T d2fz4a1 137 --YVGEFSGRI--------KELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAE----SYVQIAQMS-IAPFR 198 (206)
T ss_dssp --GEEEESSSC--------BCCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTT----THHHHHHTC-CCSEE
T ss_pred --chhhccccc--------ccccccccceehhhhhhhHhh---CCcCCEEEEECCeeCCcH----HHHHHHhcc-CCCcE
Confidence 233333322 234579999999987655432 457899999999998543 345566555 34567
Q ss_pred EEEEeeCc
Q 007085 280 MMFSATMP 287 (618)
Q Consensus 280 l~lSAT~~ 287 (618)
|+||||+.
T Consensus 199 lgLTATl~ 206 (206)
T d2fz4a1 199 LGLTATFE 206 (206)
T ss_dssp EEEEESCC
T ss_pred EEEecCCC
Confidence 89999973
No 30
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.76 E-value=1.3e-18 Score=170.65 Aligned_cols=122 Identities=33% Similarity=0.578 Sum_probs=102.2
Q ss_pred chHHHHHHHHHh---hcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecC--------cCCHHHHHHHHHHHhcCCccEE
Q 007085 330 KPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHG--------DISQSQRERTLSAFRDGRFNIL 397 (618)
Q Consensus 330 ~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg--------~~~~~~r~~i~~~f~~g~~~vL 397 (618)
|...+.+++.+. .++.++||||++++.++.+++.|.+. +++..+|| .+++.+|.++++.|++|+++||
T Consensus 144 K~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vL 223 (286)
T d1wp9a2 144 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223 (286)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEE
Confidence 455555555432 35679999999999999999999764 77777755 5677789999999999999999
Q ss_pred EEcCccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhH
Q 007085 398 IATDVAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 398 VaT~~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 452 (618)
|||+++++|||+|++++||+||+|+++..|+||+||+||.+ ++.+++|+++...
T Consensus 224 v~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~~ 277 (286)
T d1wp9a2 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTR 277 (286)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTSH
T ss_pred EEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999974 6788888877644
No 31
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.75 E-value=6.9e-19 Score=170.85 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=111.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
.+|++||.+++..++++++.++.+|||+|||+++...+. .+... ...++|||||+++|+.||++++.++...
T Consensus 112 ~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~-~~~~~-------~~~k~Liivp~~~Lv~Q~~~~f~~~~~~ 183 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLAR-YYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHH-HHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHH-Hhhhc-------ccceEEEEEcCchhHHHHHHHHHHhhcc
Confidence 569999999999999999999999999999997654443 33221 1357999999999999999999987643
Q ss_pred Cc--eEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCC
Q 007085 200 LD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (618)
Q Consensus 200 ~~--~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~ 277 (618)
.. +..+.++..... ......+|+|+|++.+..... ..++++++||+||||++ -...+..++..+.+..
T Consensus 184 ~~~~~~~~~~g~~~~~---~~~~~~~i~i~t~qs~~~~~~---~~~~~f~~VIvDEaH~~----~a~~~~~il~~~~~~~ 253 (282)
T d1rifa_ 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLA----TGKSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGC----CHHHHHHHTTTCTTCC
T ss_pred ccccceeecceecccc---cccccceEEEEeeehhhhhcc---cccCCCCEEEEECCCCC----CchhHHHHHHhccCCC
Confidence 22 233333332111 122347899999988764322 23568999999999997 3567778887776656
Q ss_pred cEEEEEeeCchH
Q 007085 278 QSMMFSATMPPW 289 (618)
Q Consensus 278 ~~l~lSAT~~~~ 289 (618)
.+++|||||+..
T Consensus 254 ~rlGlTaT~~~~ 265 (282)
T d1rifa_ 254 FKFGLSGSLRDG 265 (282)
T ss_dssp EEEEECSSCCTT
T ss_pred eEEEEEeecCCC
Confidence 679999998653
No 32
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.75 E-value=2.6e-18 Score=157.77 Aligned_cols=112 Identities=28% Similarity=0.500 Sum_probs=97.6
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhc-------------------------------CCeeeecCcCCHHHHHHHHHHHh
Q 007085 342 AKGGKCIVFTQTKRDADRLAHAMAKS-------------------------------YNCEPLHGDISQSQRERTLSAFR 390 (618)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------~~~~~lhg~~~~~~r~~i~~~f~ 390 (618)
.+++++||||++++.|+.++..|.+. ..+..+|++|++++|..+++.|+
T Consensus 38 ~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~ 117 (201)
T d2p6ra4 38 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 117 (201)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH
T ss_pred HcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHh
Confidence 35789999999999999888777531 13678999999999999999999
Q ss_pred cCCccEEEEcCccccCCCCCCccEEEE-------cCCCCChhHHHHHhccCCCCC--CcceEEEEechhhHH
Q 007085 391 DGRFNILIATDVAARGLDVPNVDLIIH-------YELPNTSETFVHRTGRTGRAG--KKGSAILIYTDQQAR 453 (618)
Q Consensus 391 ~g~~~vLVaT~~~~~GlDi~~~~~VI~-------~~~p~~~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~ 453 (618)
+|.++|||||+++++|||+|..++||+ ++.|.++.+|+|++|||||.| ..|.|++++.+.+..
T Consensus 118 ~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~ 189 (201)
T d2p6ra4 118 RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 189 (201)
T ss_dssp TTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChH
Confidence 999999999999999999999888886 567789999999999999987 478899888877653
No 33
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.71 E-value=3.4e-18 Score=148.45 Aligned_cols=136 Identities=19% Similarity=0.185 Sum_probs=90.9
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+.++++++|.+|||+|||++++.+++....+ .+.++++++|++++++|+++.+.... .........
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--------~~~~vli~~p~~~l~~q~~~~~~~~~----~~~~~~~~~-- 69 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD----VKFHTQAFS-- 69 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC----EEEESSCCC--
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhh--------cCceeeeeecchhHHHHHHHHhhhhh----hhhcccccc--
Confidence 3467899999999999999887676666544 25689999999999999988775432 222111111
Q ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcH-HHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA-EDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~-~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
........+.++|...+.... .....+.++++||+||||.+....+. ..+...+.. .++.++|+||||||
T Consensus 70 ---~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 70 ---AHGSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPP 140 (140)
T ss_dssp ---CCCCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred ---cccccccchhhhhHHHHHHHH-hccccccceeEEEEccccccChhhHHHHHHHHHHhh-CCCCCEEEEEcCCC
Confidence 001123567888888776543 34556889999999999986432211 112222222 35789999999997
No 34
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.71 E-value=4.7e-18 Score=157.05 Aligned_cols=109 Identities=24% Similarity=0.452 Sum_probs=98.0
Q ss_pred CcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 007085 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (618)
Q Consensus 328 ~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~Gl 407 (618)
..|...+.++++.+ ++.++||||++.+.++.+++.| .+..+||.++..+|+++++.|++++++|||+|+++++||
T Consensus 78 ~~K~~~l~~ll~~~-~~~k~lvf~~~~~~~~~l~~~l----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gi 152 (200)
T d2fwra1 78 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 152 (200)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEeCcHHHHHHHHhhc----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhccc
Confidence 34677788888875 5679999999999998887665 566789999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHhccCCCCCCcc
Q 007085 408 DVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKG 441 (618)
Q Consensus 408 Di~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g 441 (618)
|+|.+++||++++|+++.+|+||+||++|.++..
T Consensus 153 dl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k 186 (200)
T d2fwra1 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 186 (200)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999987643
No 35
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.67 E-value=6.6e-17 Score=139.42 Aligned_cols=127 Identities=15% Similarity=0.075 Sum_probs=87.4
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (618)
.+..+|.+|||+|||+++...++ + .+.+++|++|+++|++||.+.+.+.+.... .....+..
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~----~--------~~~~vli~~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~~----- 69 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA----A--------QGYKVLVLNPSVAATLGFGAYMSKAHGVDP-NIRTGVRT----- 69 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH----T--------TTCCEEEEESCHHHHHHHHHHHHHHHSCCC-EEECSSCE-----
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH----H--------cCCcEEEEcChHHHHHHHHHHHHHHhhccc-cccccccc-----
Confidence 35689999999999975533221 1 266899999999999999999998764332 22222221
Q ss_pred HHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC--CCCcEEEEEeeC
Q 007085 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATM 286 (618)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~--~~~~~l~lSAT~ 286 (618)
......++++|...+..... ..+.++++|||||+|++... ....+..++..+. ++.++|+|||||
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 70 --ITTGSPITYSTYGKFLADGG---CSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp --ECCCCSEEEEEHHHHHHTTG---GGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred --cccccceEEEeeeeeccccc---hhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 12235788999887754432 34778999999999986332 2334556666554 466789999997
No 36
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.65 E-value=1e-18 Score=167.19 Aligned_cols=119 Identities=18% Similarity=0.350 Sum_probs=101.3
Q ss_pred CCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEc----Cc
Q 007085 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT----DV 402 (618)
Q Consensus 327 ~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT----~~ 402 (618)
.+++...+..+++.. +.++||||++++.++.++++|.+. +||++++.+|.+++++|++|+++||||| ++
T Consensus 10 ~~~~~~~l~~~l~~~--~~~~iif~~~~~~~~~l~~~l~~~-----~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v 82 (248)
T d1gkub2 10 NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGT 82 (248)
T ss_dssp SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSHHHHHHHHTSCSEEEEECC----
T ss_pred CchHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 456777888888754 458999999999999999999753 8999999999999999999999999999 78
Q ss_pred cccCCCCCC-ccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhhHHHHH
Q 007085 403 AARGLDVPN-VDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQARQVK 456 (618)
Q Consensus 403 ~~~GlDi~~-~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 456 (618)
+++|||+|+ +++|||||+|+ |.||+||++|.++.+.+++++...+...+.
T Consensus 83 ~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~ 133 (248)
T d1gkub2 83 LVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIE 133 (248)
T ss_dssp --CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHH
T ss_pred hhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHH
Confidence 999999996 99999999996 779999999999999998888776655444
No 37
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.63 E-value=7.3e-17 Score=151.50 Aligned_cols=105 Identities=25% Similarity=0.366 Sum_probs=91.2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHH----------HHHHHHHhcCCccEEEEcCcccc---CCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQR----------ERTLSAFRDGRFNILIATDVAAR---GLD 408 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r----------~~i~~~f~~g~~~vLVaT~~~~~---GlD 408 (618)
+++++||||++++.++.+++.|.+. +++..+|++++++.| .++++.|..|+.+++|+|+++++ ++|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCC
Confidence 4679999999999999999999754 899999999999876 56888999999999999999888 577
Q ss_pred CCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEec
Q 007085 409 VPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 409 i~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
++.+.+||+++.|.++++|+||+||+|| +++|...+++.
T Consensus 115 id~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~ 153 (299)
T d1a1va2 115 LDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAP 153 (299)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCS
T ss_pred CCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEec
Confidence 8888899999999999999999999999 88887766654
No 38
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.58 E-value=1.3e-14 Score=142.49 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=105.3
Q ss_pred CChHHHHHHHHHHh---------CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 121 KLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~---------~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
.|+|||.+++.++. .+..+|+..+||+|||++++.. +..+.+.... .......+|||||. .|..||.+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~-l~~l~~~~~~-~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITL-IWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHH-HHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH-HHHHHHhccc-ccCCCCcEEEEccc-hhhHHHHH
Confidence 58999999998763 2345999999999999877543 3333331111 11123469999996 68999999
Q ss_pred HHHHhCCC-CceEEEEcCCchHHHHHH---hh-----cCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCc
Q 007085 192 EFHESAPS-LDTICVYGGTPISHQMRA---LD-----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (618)
Q Consensus 192 ~l~~~~~~-~~~~~~~~~~~~~~~~~~---~~-----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~ 262 (618)
++.++++. ..++.++++......... .. ...+++|+|++.+..... .+...++++||+||+|++.+..
T Consensus 132 Ei~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (298)
T d1z3ix2 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (298)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchh--cccccceeeeeccccccccccc-
Confidence 99998764 344444444332222111 11 135799999998875432 3334578999999999997753
Q ss_pred HHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 263 AEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 263 ~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
....+.+..+ .....++|||||..
T Consensus 209 -s~~~~a~~~l-~~~~rllLTGTPi~ 232 (298)
T d1z3ix2 209 -NQTYLALNSM-NAQRRVLISGTPIQ 232 (298)
T ss_dssp -HHHHHHHHHH-CCSEEEEECSSCSG
T ss_pred -chhhhhhhcc-ccceeeeecchHHh
Confidence 3333344444 34567999999954
No 39
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.50 E-value=9.9e-14 Score=137.51 Aligned_cols=120 Identities=13% Similarity=0.234 Sum_probs=104.9
Q ss_pred CcchHHHHHHHHHh--hcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCCHHHHHHHHHHHhcCCc---cEEEEcC
Q 007085 328 YEKPSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF---NILIATD 401 (618)
Q Consensus 328 ~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~i~~~f~~g~~---~vLVaT~ 401 (618)
..|...+..++... .++.++|||++.....+.+.+.|.. .+.+..+||.++..+|.++++.|+++.. .+|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 45777777777654 3578999999999999999999965 5899999999999999999999998653 3678889
Q ss_pred ccccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEe
Q 007085 402 VAARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIY 447 (618)
Q Consensus 402 ~~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~ 447 (618)
+.+.|||++.+++||+||++|++..+.|++||++|.|++..|.++.
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~r 225 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 225 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEE
Confidence 9999999999999999999999999999999999999887766554
No 40
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.46 E-value=1.3e-13 Score=129.70 Aligned_cols=149 Identities=19% Similarity=0.154 Sum_probs=102.1
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
+|+|||.+++..+. ....+|+..+||+|||++++..+. .+... ....++|||||. .+..||.+++.++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~-~~~~~------~~~~~~LIv~p~-~l~~~W~~e~~~~ 83 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKE------NELTPSLVICPL-SVLKNWEEELSKF 83 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhh-hhhhc------ccccccceecch-hhhhHHHHHHHhh
Confidence 58999999998754 345699999999999998754443 33321 224579999995 8889999999999
Q ss_pred CCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCC
Q 007085 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (618)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~ 276 (618)
+....+.......... .....+|+++|++.+..... +.-..+++||+||+|++.+.. ......+..+. .
T Consensus 84 ~~~~~~~~~~~~~~~~-----~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~--s~~~~~~~~l~-a 152 (230)
T d1z63a1 84 APHLRFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-S 152 (230)
T ss_dssp CTTSCEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-E
T ss_pred cccccceeeccccchh-----hccCcCEEEeeHHHHHhHHH---HhcccceEEEEEhhhcccccc--hhhhhhhhhhc-c
Confidence 8766554432221111 12346899999998854322 113368899999999997753 23334445553 4
Q ss_pred CcEEEEEeeCch
Q 007085 277 RQSMMFSATMPP 288 (618)
Q Consensus 277 ~~~l~lSAT~~~ 288 (618)
..++++||||..
T Consensus 153 ~~r~~LTgTPi~ 164 (230)
T d1z63a1 153 KYRIALTGTPIE 164 (230)
T ss_dssp EEEEEECSSCST
T ss_pred ceEEEEecchHH
Confidence 567999999953
No 41
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.45 E-value=1.1e-13 Score=131.30 Aligned_cols=119 Identities=19% Similarity=0.301 Sum_probs=87.7
Q ss_pred CcchHHHHHHHHHh-hcCCcEEEEecchhHHHHHHHHHHh--cCCeeeecCcCCHHHHHHHHHHHhcCC-ccEEE-EcCc
Q 007085 328 YEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDGR-FNILI-ATDV 402 (618)
Q Consensus 328 ~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~i~~~f~~g~-~~vLV-aT~~ 402 (618)
..|...+.+++.+. ..+.++||||+.....+.+.+.|.+ ...+..+||+++..+|+++++.|+++. ..+|| +|.+
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~ 147 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 147 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccc
Confidence 34677777777654 4578999999999999999988854 477888999999999999999998764 56665 5578
Q ss_pred cccCCCCCCccEEEEcCCCCChhHHHHHhccCCCCCCcceEEEE
Q 007085 403 AARGLDVPNVDLIIHYELPNTSETFVHRTGRTGRAGKKGSAILI 446 (618)
Q Consensus 403 ~~~GlDi~~~~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~ 446 (618)
.+.|+|++.+++||++++||++..+.|++||++|.|++..+.++
T Consensus 148 ~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~ 191 (244)
T d1z5za1 148 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 191 (244)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred cccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEE
Confidence 99999999999999999999999999999999999876655543
No 42
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.29 E-value=7.6e-12 Score=120.03 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=79.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCccEEEEcCC-
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLIIHYEL- 420 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi~~~~~VI~~~~- 420 (618)
..+++||||+++.+++.+++.|.+. +++.++|+.+...+++ .|++++.+|||||+++++|||+ ++.+||+...
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~ 109 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTA 109 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCce
Confidence 3578999999999999999999764 8899999999987755 4678999999999999999999 6999996543
Q ss_pred ------------------CCChhHHHHHhccCCCCCCcceEEEEec
Q 007085 421 ------------------PNTSETFVHRTGRTGRAGKKGSAILIYT 448 (618)
Q Consensus 421 ------------------p~~~~~~~Qr~GR~gR~g~~g~~~~~~~ 448 (618)
|.+..+..||.||+||.+....++.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 110 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred eceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 2467888999999999865556666654
No 43
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=99.14 E-value=3.5e-10 Score=97.53 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=94.8
Q ss_pred cCCcchHHH-HHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcc
Q 007085 326 SMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (618)
Q Consensus 326 ~~~~~~~~l-~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~ 403 (618)
+..+|...+ .++.+.+.++.++||+|.|++.++.+++.|.+. +++.+++......+-+ ++ ...-..-.|.|||+++
T Consensus 15 T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~-II-~~Ag~~g~VtIATNmA 92 (175)
T d1tf5a4 15 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQ-II-EEAGQKGAVTIATNMA 92 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHH-HH-TTTTSTTCEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHH-HH-HhccCCCceeehhhHH
Confidence 344454444 444455667899999999999999999999764 8888999886543332 22 2222234699999999
Q ss_pred ccCCCCCC---c-----cEEEEcCCCCChhHHHHHhccCCCCCCcceEEEEechhh
Q 007085 404 ARGLDVPN---V-----DLIIHYELPNTSETFVHRTGRTGRAGKKGSAILIYTDQQ 451 (618)
Q Consensus 404 ~~GlDi~~---~-----~~VI~~~~p~~~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 451 (618)
.+|.||.- + -|||....|.+.....|..||++|.|.+|.+.+|++-.|
T Consensus 93 GRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 93 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 99999843 2 279999999999999999999999999999888886544
No 44
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.65 E-value=9.4e-08 Score=87.52 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=91.7
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~-- 198 (618)
.+++.|.-.--.+..+ -|.+..||-|||+++.+|++-..+. +..|-||+.+.-||..-++++..++.
T Consensus 80 RhyDVQLiGgi~L~~G--~iaem~TGEGKTL~a~l~a~l~al~---------g~~vhvvTvNdyLA~RDae~m~~iy~~l 148 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDG--NIAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGKIFEFL 148 (273)
T ss_dssp CCCHHHHHHHHHHHTT--SEEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred EEehhHHHHHHHHHhh--hheeecCCCcchhHHHHHHHHHHhc---------CCCceEEecCccccchhhhHHhHHHHHc
Confidence 4777777666666664 6899999999999999888766554 66788888899999888887776554
Q ss_pred CCceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhcc
Q 007085 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (618)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~ 258 (618)
++.+.++........+... ..++|+++|...| .++|+... ...+.+.+.||||+|.++
T Consensus 149 Glsvg~~~~~~~~~~r~~~--Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 149 GLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp TCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred CCCccccccccCHHHHHHH--hhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 4566666655555444443 3579999999998 55555432 235668999999999764
No 45
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.58 E-value=5.9e-08 Score=89.29 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC--C
Q 007085 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~--~ 199 (618)
+.+.|.-.--.+. +.-|.+..||-|||+++.+|++-..+. +..+-||+.+..||..-++++..++. +
T Consensus 98 hyDVQLiGgi~l~--~g~iaem~TGEGKTL~a~l~a~l~al~---------g~~vhvvTvNdyLA~RDa~~m~~~y~~lG 166 (288)
T d1nkta3 98 PFDVQVMGAAALH--LGNVAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 166 (288)
T ss_dssp CCHHHHHHHHHHH--TTEEEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehhHHHHHHh--hhhhhcccCCCchhHHHHHHHHHHHhc---------CCCeEEEecCchhhhhhHHHHHHHHHHhC
Confidence 6667765544444 468999999999999999988766554 66788889999999888887776554 4
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHH-HHHHHhcC------CCCCCcceEEEccchhcc
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~~~~vViDEaH~~~ 258 (618)
+.+.++........... ...++|+++|...| .++|+... ...+.+.++||||+|.++
T Consensus 167 lsvg~~~~~~~~~~~~~--~Y~~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiL 230 (288)
T d1nkta3 167 LQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 230 (288)
T ss_dssp CCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred CCcCcccccCChHHHHH--HhhcccccccHHHHhhhhhhhhhccChhhhcccCCcEEEEEcccccc
Confidence 66666666666555444 34579999999998 55554432 235668999999999764
No 46
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.49 E-value=6.3e-07 Score=78.20 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=92.3
Q ss_pred CcchHH-HHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCC-ccEEEEcCccc
Q 007085 328 YEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR-FNILIATDVAA 404 (618)
Q Consensus 328 ~~~~~~-l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~-~~vLVaT~~~~ 404 (618)
..|... +.++...+.++.|+||-+.+++..+.+.+.|.+. +++.+|++.....+- +|+. +.|+ -.|.|||+++.
T Consensus 17 ~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEA-eIIA--qAG~~GaVTIATNMAG 93 (219)
T d1nkta4 17 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEA-TIIA--VAGRRGGVTVATNMAG 93 (219)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHH-HHHH--TTTSTTCEEEEETTCS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHH-HHHH--hcccCCcEEeeccccC
Confidence 344444 4455556678999999999999999999999764 899999987543222 2222 3343 46899999999
Q ss_pred cCCCCCC----------------------------------------------------ccEEEEcCCCCChhHHHHHhc
Q 007085 405 RGLDVPN----------------------------------------------------VDLIIHYELPNTSETFVHRTG 432 (618)
Q Consensus 405 ~GlDi~~----------------------------------------------------~~~VI~~~~p~~~~~~~Qr~G 432 (618)
+|.||.= =-+||-.....|..--.|..|
T Consensus 94 RGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQLRG 173 (219)
T d1nkta4 94 RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRG 173 (219)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHH
T ss_pred CCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccccccc
Confidence 9999932 116777777778887889999
Q ss_pred cCCCCCCcceEEEEechhhH
Q 007085 433 RTGRAGKKGSAILIYTDQQA 452 (618)
Q Consensus 433 R~gR~g~~g~~~~~~~~~~~ 452 (618)
|+||.|.+|.+.+|++-.|.
T Consensus 174 RsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 174 RSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp TSSGGGCCEEEEEEEETTSH
T ss_pred cccccCCCccceeEEeccHH
Confidence 99999999999988876554
No 47
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=98.23 E-value=2.3e-06 Score=84.07 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=86.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..+.+.|++|+..++.++-++|+++.|+|||.+. ..++..+.+. ....+.++++++||-.-+....+.+......
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i-~~~l~~l~~~----~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~ 221 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQM----ADGERCRIRLAAPTGKAAARLTESLGKALRQ 221 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHH-HHHHHHHHHT----CSSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceehH-HHHHHHHHHH----HhccCCeEEEecCcHHHHHHHHHHHHHHHhh
Confidence 4467899999999999888999999999999864 3333333331 1233668999999998888887766442111
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHH------HHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHC
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI------DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~------~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l 273 (618)
+...... . .....-..|..+++ ..+........++++|||||+-.+ -...+..++..+
T Consensus 222 ~~~~~~~---~---------~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv----~~~l~~~ll~~~ 285 (359)
T d1w36d1 222 LPLTDEQ---K---------KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI----DLPMMSRLIDAL 285 (359)
T ss_dssp SSCCSCC---C---------CSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGC----BHHHHHHHHHTC
T ss_pred cCchhhh---h---------hhhhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhcc----CHHHHHHHHHHh
Confidence 1000000 0 00000001111110 111222334567899999999986 346677888888
Q ss_pred CCCCcEEEEE
Q 007085 274 PQNRQSMMFS 283 (618)
Q Consensus 274 ~~~~~~l~lS 283 (618)
++..++|++-
T Consensus 286 ~~~~~lILvG 295 (359)
T d1w36d1 286 PDHARVIFLG 295 (359)
T ss_dssp CTTCEEEEEE
T ss_pred cCCCEEEEEC
Confidence 8777777654
No 48
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=97.45 E-value=9.5e-05 Score=70.87 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC
Q 007085 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (618)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~ 198 (618)
+|+|-|++++... ...++|.|+.|||||.+.+.-+...+.... .+..++||+++|+++++.+.+.+.+...
T Consensus 1 ~L~~eQ~~av~~~--~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~-----~~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhCC--CCCEEEEeeCCccHHHHHHHHHHHHHHhcC-----CChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 4789999999762 356999999999999876544443332211 1134799999999999999888877653
No 49
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=97.42 E-value=0.00023 Score=62.73 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=76.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.++.||||..+-.++.++.+++.++..++.++||..+..+....+. ...+||||| .+-+..+++.+..+
T Consensus 31 GgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~T------tvIEvGiDvpnA~~ 104 (211)
T d2eyqa5 31 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT------TIIETGIDIPTANT 104 (211)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES------STTGGGSCCTTEEE
T ss_pred CCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEe------hhhhhccCCCCCcE
Confidence 78999999999999999999999999999999999988766544433 469999999 44455678999999
Q ss_pred EEEccchhccCCCcHHHHHHHHHHCC
Q 007085 249 VVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 249 vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
+||..|+++ -..++..+.-+..
T Consensus 105 iiI~~a~rf----GLaQLhQLRGRVG 126 (211)
T d2eyqa5 105 IIIERADHF----GLAQLHQLRGRVG 126 (211)
T ss_dssp EEETTTTSS----CHHHHHHHHTTCC
T ss_pred EEEecchhc----cccccccccceee
Confidence 999999997 5677777777764
No 50
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=96.97 E-value=0.00039 Score=62.20 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHh----CC---CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 122 LFPIQKAVLEPAM----QG---RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 122 l~~~Q~~~i~~i~----~~---~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
++|||.++++.+. ++ +.+|+.+|.|+|||..+. .++..+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~-~~a~~l 48 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYL 48 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHH-HHHHhc
Confidence 5678877777553 33 238999999999998653 333444
No 51
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=96.95 E-value=0.00063 Score=65.30 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..|++-|++++... ...++|.|+.|||||.+.+--+...+.. . .....++|++++++.++..+...+.+.
T Consensus 10 ~~L~~eQ~~~v~~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~-~----~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAE-K----HVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHT-T----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHhCC--CCCEEEEecCCccHHHHHHHHHHHHHHc-C----CCCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 45899999999864 3479999999999998775555444322 1 111247999999999999998888764
No 52
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=96.90 E-value=0.0027 Score=56.70 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=57.9
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (618)
.++|.+++|+|||.. +.++...+.+ .+..+ +..+...+..+....+...
T Consensus 38 ~l~l~G~~G~GKTHL-l~A~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~--------------------- 86 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHL-LQAAGNEAKK--------RGYRV-IYSSADDFAQAMVEHLKKG--------------------- 86 (213)
T ss_dssp SEEEECSSSSSHHHH-HHHHHHHHHH--------TTCCE-EEEEHHHHHHHHHHHHHHT---------------------
T ss_pred cEEEECCCCCcHHHH-HHHHHHHhcc--------Cccce-EEechHHHHHHHHHHHHcc---------------------
Confidence 389999999999973 3444444433 12334 4445556655555554331
Q ss_pred hhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCC-CcHHHHHHHHHHCC-CCCcEEEEEeeCch
Q 007085 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLP-QNRQSMMFSATMPP 288 (618)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~-~~~~~l~lSAT~~~ 288 (618)
....+... +...++|+||++|.+... .+...+..++..+. ...++|+.|..+|.
T Consensus 87 ----------~~~~~~~~-------~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 87 ----------TINEFRNM-------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp ----------CHHHHHHH-------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred ----------chhhHHHH-------HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 11112222 346788999999988643 23445566666654 34555554444443
No 53
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=96.71 E-value=0.0039 Score=57.17 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=73.9
Q ss_pred cchHHH-HHHHHHhhcCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc
Q 007085 329 EKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (618)
Q Consensus 329 ~~~~~l-~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~ 402 (618)
.|.... ..+......+.++++.+|+.--+...++.+.+ .+.+..+|+.++..+|.+++..+.+|+.+|+|.|-.
T Consensus 116 GKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThs 195 (264)
T d1gm5a3 116 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 195 (264)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred cccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehH
Confidence 344333 33334445688999999999999888887765 357889999999999999999999999999999976
Q ss_pred c-ccCCCCCCccEEEEcCCCCChhHHHHHh
Q 007085 403 A-ARGLDVPNVDLIIHYELPNTSETFVHRT 431 (618)
Q Consensus 403 ~-~~GlDi~~~~~VI~~~~p~~~~~~~Qr~ 431 (618)
+ ...+.+.++..||+-...+- .|.||.
T Consensus 196 l~~~~~~f~~LglviiDEqH~f--gv~Qr~ 223 (264)
T d1gm5a3 196 LIQEDVHFKNLGLVIIDEQHRF--GVKQRE 223 (264)
T ss_dssp HHHHCCCCSCCCEEEEESCCCC-------C
T ss_pred HhcCCCCccccceeeecccccc--chhhHH
Confidence 4 45677778888887554432 356665
No 54
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=96.55 E-value=0.0064 Score=53.62 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=37.7
Q ss_pred CCCcceEEEccchhccCC-CcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhc
Q 007085 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l 298 (618)
+.+.++|+||=+=+.... ....++.++.+...+...+++++||...+....+..++
T Consensus 90 ~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~ 146 (207)
T d1ls1a2 90 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFD 146 (207)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred hccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHH
Confidence 346678888888765332 13455666666677777788999998876666665553
No 55
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=96.53 E-value=0.0055 Score=53.86 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=31.6
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
....+++||||||+|... ....+.++++.-+++..++++|..+..
T Consensus 77 ~~~~KviIId~ad~l~~~-aqNaLLK~LEEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 77 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred cCCCEEEEEeCccccchh-hhhHHHHHHhCCCCCceeeeccCChhh
Confidence 356789999999998543 445566666666677777777666543
No 56
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.44 E-value=0.0031 Score=57.87 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
..+.++||||+|.+... ....+..+++..+.++.+|+.+-.
T Consensus 130 ~~~~iiiide~d~l~~~-~~~~l~~~~e~~~~~~~~Il~tn~ 170 (252)
T d1sxje2 130 HRYKCVIINEANSLTKD-AQAALRRTMEKYSKNIRLIMVCDS 170 (252)
T ss_dssp -CCEEEEEECTTSSCHH-HHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCceEEEeccccccccc-cchhhhcccccccccccceeeecc
Confidence 45679999999987443 445566777776666666654443
No 57
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=96.40 E-value=0.027 Score=47.77 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.++||.|+|+..++.+.+.|.+. ++.+..++++.+..++.+.+. ...+|||+| .+....+++.++++
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~~--Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT------~v~~~GiDip~V~~ 102 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI------NLLREGLDIPEVSL 102 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES------CCCCTTCCCTTEEE
T ss_pred CCcEEEEEcchhHHHHHHHHHHhc--CCceEEEecccchHHHHHHHHHHHCCCeEEEEee------eeeeeeccCCCCcE
Confidence 678999999999999999999986 588999999999877766554 359999999 55566788999999
Q ss_pred EEEccchh
Q 007085 249 VVLDEADQ 256 (618)
Q Consensus 249 vViDEaH~ 256 (618)
||+=.++.
T Consensus 103 Vi~~~~~~ 110 (174)
T d1c4oa2 103 VAILDADK 110 (174)
T ss_dssp EEETTTTS
T ss_pred EEEecccc
Confidence 99866664
No 58
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=96.30 E-value=0.0078 Score=54.91 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=32.7
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHh--CCCCEEEEccCCChhHHHH
Q 007085 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (618)
.|..+|+++.-.+++++.|...- . + ..+.+.+..+- ..+.+|+.+|+|+|||+.+
T Consensus 3 ~p~~~~~di~G~~~~k~~l~~~i-~-~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 3 APKVTFKDVAGAEEAKEELKEIV-E-F-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHH-H-H-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCcHHHHccHHHHHHHHHHHH-H-H-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 45578888877777777765320 0 1 00111222221 1246999999999999854
No 59
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=96.27 E-value=0.0047 Score=60.63 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=51.4
Q ss_pred CCChHHHHHHHHHHhC----C-CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 120 SKLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~-~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+.|+--|=+||..+.+ + ++.+|.+-||||||+++ ..++... +..+|||+|+..+|.|++++++
T Consensus 10 ~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~i-A~l~~~~-----------~rp~LVVt~n~~~A~qL~~dL~ 77 (413)
T d1t5la1 10 YEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTI-SNVIAQV-----------NKPTLVIAHNKTLAGQLYSELK 77 (413)
T ss_dssp SCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHH-HHHHHHH-----------TCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHH-HHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHH
Confidence 3466667666665544 3 46889999999999743 2333322 3459999999999999999999
Q ss_pred HhCCCCce
Q 007085 195 ESAPSLDT 202 (618)
Q Consensus 195 ~~~~~~~~ 202 (618)
.+++...+
T Consensus 78 ~~l~~~~v 85 (413)
T d1t5la1 78 EFFPHNAV 85 (413)
T ss_dssp HHCTTSEE
T ss_pred HHcCCCce
Confidence 99875443
No 60
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=96.20 E-value=0.013 Score=52.38 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCcchHHHHHHH-HHhhcCCcEEEEecchhHHHHHHHHHHhc-----CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEc
Q 007085 327 MYEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (618)
Q Consensus 327 ~~~~~~~l~~~l-~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT 400 (618)
-..|.......+ .....+.++++.+|+.--+...++.+++. ..+..+|+.++..+|.++.+.+.+|+.+|||.|
T Consensus 86 GsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGt 165 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 165 (233)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEee
Confidence 344555544443 44567889999999999999999988762 467889999999999999999999999999999
Q ss_pred Ccc-ccCCCCCCccEEEEcCCCC
Q 007085 401 DVA-ARGLDVPNVDLIIHYELPN 422 (618)
Q Consensus 401 ~~~-~~GlDi~~~~~VI~~~~p~ 422 (618)
-.+ ..-+.++++..||......
T Consensus 166 hs~l~~~~~f~~LgLiIiDEeH~ 188 (233)
T d2eyqa3 166 HKLLQSDVKFKDLGLLIVDEEHR 188 (233)
T ss_dssp THHHHSCCCCSSEEEEEEESGGG
T ss_pred hhhhccCCccccccceeeechhh
Confidence 754 4568888888877755444
No 61
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=96.15 E-value=0.0067 Score=49.76 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=49.9
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (618)
-++.+||-||||.-.+.- +..+.. .+.+++++-|...-- ... .+ ..+.+.
T Consensus 5 ~~i~GpMfsGKTteLi~~-~~~~~~--------~~~kv~~ikp~~D~R---------~~~--~i-~s~~g~--------- 54 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRR-LHRLEY--------ADVKYLVFKPKIDTR---------SIR--NI-QSRTGT--------- 54 (139)
T ss_dssp EEEECSTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEECCCGG---------GCS--SC-CCCCCC---------
T ss_pred EEEEccccCHHHHHHHHH-HHHHHH--------CCCcEEEEEEccccc---------ccc--eE-EcccCc---------
Confidence 478999999999744333 333322 156789998863210 000 11 111111
Q ss_pred hcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhc
Q 007085 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (618)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~ 257 (618)
.-..+.+.+...+.+.+..... ..++++|.|||+|-+
T Consensus 55 -~~~~~~~~~~~~~~~~~~~~~~-~~~~dvI~IDE~QFf 91 (139)
T d2b8ta1 55 -SLPSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 91 (139)
T ss_dssp -SSCCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred -eeeeEEeccchhhHHHHHhhcc-ccCcCEEEechhhhc
Confidence 1134556666666666654433 468899999999975
No 62
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=96.14 E-value=0.0026 Score=67.02 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=54.0
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhC
Q 007085 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (618)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~ 197 (618)
-+..|++-|++++.. ...+++|+|..|||||.+.+--+...+.+.. ....++|+|+.|+..++++.+++.+.+
T Consensus 8 ~~~~L~~eQ~~~v~~--~~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~-----~~p~~Il~ltft~~Aa~ei~~Ri~~~l 80 (623)
T g1qhh.1 8 LLAHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLL 80 (623)
T ss_dssp HHTTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHcC--CCCCEEEEEeCchHHHHHHHHHHHHHHHcCC-----CCcccEEEEeccHHHHHHHHHHHHHhc
Confidence 346799999999973 3467999999999999877655544433211 112369999999999999988887654
No 63
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=95.94 E-value=0.023 Score=51.36 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=30.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCC---CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
..|+++-..+++.+.|+.. +.++ +.+|+.+|+|+|||..+. .++..+
T Consensus 9 ~~~~dlig~~~~~~~L~~~---------------i~~~~~~~~~Ll~Gp~G~GKtt~a~-~~~~~l 58 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSIAR-LLAKGL 58 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHH---------------HHTTCCCSEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CCHHHccChHHHHHHHHHH---------------HHcCCCCeeEEEECCCCCcHHHHHH-HHHHHh
Confidence 3567777777777766432 1222 348999999999998654 444444
No 64
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.69 E-value=0.026 Score=50.46 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=26.8
Q ss_pred CCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 007085 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (618)
Q Consensus 241 ~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSA 284 (618)
.......++|+||+|.+... ....+..++......+.+++.+-
T Consensus 95 ~~~~~~kiiiiDe~d~~~~~-~~~~Ll~~le~~~~~~~~~~~~~ 137 (227)
T d1sxjc2 95 IFSKGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLAN 137 (227)
T ss_dssp SSSCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred ccCCCeEEEEEeccccchhh-HHHHHHHHhhhcccceeeccccC
Confidence 34556679999999987543 34455566666655554444443
No 65
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.68 E-value=0.016 Score=51.89 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.....+||+||+|.+... ....+...+...+..+.+++.+.+..+
T Consensus 99 ~~~~kviiiDe~d~~~~~-~~~~ll~~~e~~~~~~~~i~~~~~~~~ 143 (224)
T d1sxjb2 99 PGKHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACNQSNK 143 (224)
T ss_dssp TTCCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CcceEEEEEecccccchh-HHHHHhhhccccccceeeeeccCchhh
Confidence 345679999999998553 334445556666666666666665544
No 66
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=95.64 E-value=0.023 Score=48.84 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=63.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.+++|.|+++..++.+++.+++. ++.+..++++.+..++...+. ...+||||| .+....+++.++++
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~--g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaT------dv~~rGiDip~v~~ 102 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEA--GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI------NLLREGLDIPEVSL 102 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEES------CCCSSSCCCTTEEE
T ss_pred CCeEEEEeehhhhhHHHHHHHHhC--CcceeEecCCccHHHHHHHHHHHHCCCCCEEEeh------hHHHccCCCCCCCE
Confidence 568999999999999999999876 578899999999877765554 369999999 45566788999999
Q ss_pred EEEccchh
Q 007085 249 VVLDEADQ 256 (618)
Q Consensus 249 vViDEaH~ 256 (618)
||.-++..
T Consensus 103 VI~~d~p~ 110 (181)
T d1t5la2 103 VAILDADK 110 (181)
T ss_dssp EEETTTTS
T ss_pred EEEecCCc
Confidence 99877765
No 67
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=95.52 E-value=0.058 Score=47.23 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=31.4
Q ss_pred CCcceEEEccchhccCC-CcHHHHHHHHHHCC------CCCcEEEEEeeCchHHHHHHHHh
Q 007085 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLP------QNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~------~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
+++++|+||=+=+.-.. ....++.++.+.+. +...++.++||........+..+
T Consensus 90 ~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~ 150 (211)
T d2qy9a2 90 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 150 (211)
T ss_dssp TTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred cCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhh
Confidence 56788999988654211 12344444444432 34567889999876555544444
No 68
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=95.27 E-value=0.048 Score=47.72 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=28.9
Q ss_pred CCcceEEEccchhccCCC-cHHHHHHHHHHC------CCCCcEEEEEeeCchHHHHHHHH
Q 007085 244 SEVQFVVLDEADQMLSVG-FAEDVEVILERL------PQNRQSMMFSATMPPWIRSLTNK 296 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~-~~~~~~~il~~l------~~~~~~l~lSAT~~~~~~~~~~~ 296 (618)
.+.++|+||=+=+..... ...++..+.+.+ .+...+++++||........+..
T Consensus 87 ~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~ 146 (207)
T d1okkd2 87 RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK 146 (207)
T ss_dssp HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH
T ss_pred CCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH
Confidence 356788888887653221 123333333322 23445788899987654444333
No 69
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=95.26 E-value=0.046 Score=48.02 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=29.8
Q ss_pred CCCcceEEEccchhccCC-CcHHHHHHHHHHCC------CCCcEEEEEeeCchHHHHHHHH
Q 007085 243 LSEVQFVVLDEADQMLSV-GFAEDVEVILERLP------QNRQSMMFSATMPPWIRSLTNK 296 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~-~~~~~~~~il~~l~------~~~~~l~lSAT~~~~~~~~~~~ 296 (618)
..++++|+||=+=+.... ....++..+..... +...+++++||........+..
T Consensus 91 ~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~ 151 (213)
T d1vmaa2 91 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKI 151 (213)
T ss_dssp HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHH
T ss_pred HcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhh
Confidence 346788999888654221 11233344444332 2345789999987654444433
No 70
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=95.20 E-value=0.018 Score=47.07 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=24.3
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~ 183 (618)
-++.+||-||||.-. +-.+..+.. .+.+++++-|..
T Consensus 10 ~lI~GpMfSGKTteL-i~~~~~~~~--------~g~~vl~i~~~~ 45 (141)
T d1xx6a1 10 EVIVGPMYSGKSEEL-IRRIRRAKI--------AKQKIQVFKPEI 45 (141)
T ss_dssp EEEECSTTSSHHHHH-HHHHHHHHH--------TTCCEEEEEEC-
T ss_pred EEEEeccccHHHHHH-HHHHHHhhh--------cCCcEEEEEecc
Confidence 578999999999744 433333322 156799999974
No 71
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.09 E-value=0.013 Score=47.56 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=23.7
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCc
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt 182 (618)
-++.+||-||||.- |+-.+..... .+.+++++-|.
T Consensus 5 ~li~GpMfsGKTt~-Li~~~~~~~~--------~g~~v~~ikp~ 39 (133)
T d1xbta1 5 QVILGPMFSGKSTE-LMRRVRRFQI--------AQYKCLVIKYA 39 (133)
T ss_dssp EEEECCTTSCHHHH-HHHHHHHHHT--------TTCCEEEEEET
T ss_pred EEEEecccCHHHHH-HHHHHHHHHH--------cCCcEEEEecc
Confidence 47899999999974 3443333321 25678999886
No 72
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=94.99 E-value=0.08 Score=48.09 Aligned_cols=54 Identities=17% Similarity=0.088 Sum_probs=30.5
Q ss_pred CCCCccCCCCCHHHHHHHHHcC--CCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 97 EGLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
...+|+++.-.+++++.|.+.- +..+..+|+.. +...+.+|+.+|+|+|||+.+
T Consensus 7 ~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH
Confidence 3457888877777777664310 11111111110 112356999999999999854
No 73
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=94.88 E-value=0.12 Score=45.10 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=34.5
Q ss_pred CCCcceEEEccchhccCCC---cHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHh
Q 007085 243 LSEVQFVVLDEADQMLSVG---FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~---~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~ 297 (618)
..+.++|+||=+=+..... ...++..+...+.+...+++++||...+.......+
T Consensus 92 ~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~ 149 (211)
T d1j8yf2 92 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKF 149 (211)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred ccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhh
Confidence 3467889998775532111 234566667777777778889999876544444433
No 74
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=94.79 E-value=0.1 Score=46.49 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=27.2
Q ss_pred CccCCCCCHHHHHHHHHcCCCCChHHHHHHHHHHhCCCCEEEEccCCChhHHHH
Q 007085 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
.|+++-..+++.+.|... +.. ..-.++|+.||+|+|||.++
T Consensus 22 ~~~diig~~~~~~~l~~~------------i~~-~~~~~lll~Gp~G~GKTtla 62 (231)
T d1iqpa2 22 RLDDIVGQEHIVKRLKHY------------VKT-GSMPHLLFAGPPGVGKTTAA 62 (231)
T ss_dssp STTTCCSCHHHHHHHHHH------------HHH-TCCCEEEEESCTTSSHHHHH
T ss_pred CHHHccCcHHHHHHHHHH------------HHc-CCCCeEEEECCCCCcHHHHH
Confidence 566777777777666432 000 12246999999999999755
No 75
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.73 E-value=0.027 Score=50.68 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=28.5
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHH
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
.....++|+||+|.+... ....+..++........++..+....+.+..+
T Consensus 106 ~~~~~viiiDe~d~l~~~-~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l 155 (237)
T d1sxjd2 106 CPPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNYVTRIIDPL 155 (237)
T ss_dssp CCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred ccCceEEEEecccccCHH-HHHHHhhccccccccccccccccccccccccc
Confidence 345668999999988543 23344555555555555555544444333333
No 76
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.55 E-value=0.089 Score=44.07 Aligned_cols=71 Identities=10% Similarity=0.253 Sum_probs=57.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|.++..++++++.+.+. .+.+..+++..+..++...++ ....||||| .+....+++.++++
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~T------dv~~rGiDi~~v~~ 98 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST------DLLARGIDVQQVSL 98 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE------GGGTTTCCCCSCSE
T ss_pred CCcEEEEEEEEchHHHHHHHHhhc--CceEEEeccCCchhhHHHHHHHHhhcccceeecc------ccccccccCCCceE
Confidence 457999999999999999999876 467888888888777765544 358999999 34566788999999
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 99 VI~ 101 (162)
T d1fuka_ 99 VIN 101 (162)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 77
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=94.30 E-value=0.17 Score=45.54 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.5
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+|+.+|+|+|||..+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35999999999999854
No 78
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=94.25 E-value=0.1 Score=44.80 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=18.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~ 163 (618)
.|+|+.++.|.|||... --+...+.+
T Consensus 44 ~n~lLvG~pGVGKTalv-~~LA~ri~~ 69 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIV-EGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHHH
T ss_pred CCeEEEecCCcccHHHH-HHHHHHHHh
Confidence 47999999999999744 333334433
No 79
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=93.98 E-value=0.14 Score=42.47 Aligned_cols=70 Identities=13% Similarity=0.280 Sum_probs=54.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++.-+.++++.|.+. .+.+..+++..+..++...+. ....|+||| +. ....+++..+++
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T-----~~-~~~Gid~~~v~~ 99 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DV-MSRGIDVNDLNC 99 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TT-HHHHCCCSCCSE
T ss_pred CCCEEEEECchHHHHHHHhhhccc--ccccccccccchhhhhhhhhhhhhcccceeeeeh-----hH-HhhhhhhccCcE
Confidence 457999999999999999999886 467788888877766655443 358999999 32 334567889999
Q ss_pred EE
Q 007085 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 100 Vi 101 (155)
T d1hv8a2 100 VI 101 (155)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 80
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=93.66 E-value=0.71 Score=39.71 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+|+..++.+++.+... .+.+..++++.+...+...+. ...+|||+| .+....+++.++++
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT------d~~~~GiD~p~v~~ 101 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT------VAFGMGINKPNVRF 101 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC------TTSCTTTCCTTCCE
T ss_pred CCCEEEEEeeehhhHHhhhhhccC--CceeEEecCCCcHHHHHHHHHHHhcccceEEEec------chhhhccCCCCCCE
Confidence 457999999999999999999876 467888888887766554443 458999999 34456678899999
Q ss_pred EE
Q 007085 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 102 VI 103 (200)
T d1oywa3 102 VV 103 (200)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 81
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.57 E-value=0.097 Score=47.64 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=14.3
Q ss_pred CCEEEEccCCChhHHH
Q 007085 137 RDMIGRARTGTGKTLA 152 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~ 152 (618)
+.+|+.+|+|+|||+.
T Consensus 39 ~giLL~GppGtGKT~l 54 (258)
T d1e32a2 39 RGILLYGPPGTGKTLI 54 (258)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred ceeEEecCCCCCchHH
Confidence 5699999999999974
No 82
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=93.22 E-value=0.082 Score=51.53 Aligned_cols=68 Identities=29% Similarity=0.360 Sum_probs=47.8
Q ss_pred ChHHHHHHHHH----HhCCCC-EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 122 LFPIQKAVLEP----AMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 122 l~~~Q~~~i~~----i~~~~~-~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
|+--|-+||.. +.++.. +.|.+-+||+||++. ..++... +..+|||||+...|.++++.+..+
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~-A~l~~~~-----------~rp~LvVt~~~~~A~~l~~dL~~~ 76 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTM-AKVIEAL-----------GRPALVLAPNKILAAQLAAEFREL 76 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHH-----------TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH-HHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHHh
Confidence 45556555554 444544 688999999999632 2222222 335899999999999999999998
Q ss_pred CCCCc
Q 007085 197 APSLD 201 (618)
Q Consensus 197 ~~~~~ 201 (618)
+++..
T Consensus 77 l~~~~ 81 (408)
T d1c4oa1 77 FPENA 81 (408)
T ss_dssp CTTSE
T ss_pred cCccc
Confidence 86543
No 83
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.05 E-value=0.27 Score=41.28 Aligned_cols=73 Identities=7% Similarity=0.102 Sum_probs=57.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|.++.-++.++..|... ++.+..++++.+...+...+. ...+|+||| .+....+++.++++
T Consensus 32 ~~k~iVF~~~~~~~~~l~~~L~~~--g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~T------d~~~~Gid~~~v~~ 103 (171)
T d1s2ma2 32 INQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS------DLLTRGIDIQAVNV 103 (171)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES------SCSSSSCCCTTEEE
T ss_pred CCceEEEEeeeehhhHhHHhhhcc--cccccccccccchhhhhhhhhhcccCccccccch------hHhhhccccceeEE
Confidence 468999999999999999999887 577888888888766655443 358999999 33456678899999
Q ss_pred EEEcc
Q 007085 249 VVLDE 253 (618)
Q Consensus 249 vViDE 253 (618)
||.=+
T Consensus 104 VI~~d 108 (171)
T d1s2ma2 104 VINFD 108 (171)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 99433
No 84
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=92.64 E-value=0.15 Score=42.10 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=39.0
Q ss_pred CCCCCcceEEEccchhccCCCc--HHHHHHHHHHCCCCCcEEEEEeeCchHHHHH
Q 007085 241 LNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 241 ~~~~~~~~vViDEaH~~~~~~~--~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
+.-..+++||+||+-...+.++ .+.+..+++..|....+|++--.+|+++.++
T Consensus 90 ~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ 144 (157)
T d1g5ta_ 90 LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 144 (157)
T ss_dssp TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred hhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 4456799999999997766553 5677778887777777777766678765554
No 85
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.48 E-value=0.22 Score=41.76 Aligned_cols=70 Identities=10% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|.++.-++..++.+.+. ...+..+++..+..++...+. ...+|+||| .+....+++.++++
T Consensus 34 ~~k~iiF~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~T------d~~~rGiDi~~v~~ 105 (168)
T d2j0sa2 34 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST------DVWARGLDVPQVSL 105 (168)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC------GGGSSSCCCTTEEE
T ss_pred CCceEEEeeeHHHHHHHHHHhhhc--ccchhhhhhhhhHHHHHHHHHHHhcCCccEEecc------chhcccccccCcce
Confidence 458999999999999999999876 466788888888777655543 358999999 44566788999999
Q ss_pred EE
Q 007085 249 VV 250 (618)
Q Consensus 249 vV 250 (618)
||
T Consensus 106 VI 107 (168)
T d2j0sa2 106 II 107 (168)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 86
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=92.41 E-value=0.81 Score=41.23 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.3
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~ 163 (618)
.|+|+.++.|.|||... -.+...+.+
T Consensus 40 ~n~lLVG~~GvGKTalv-~~la~ri~~ 65 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIA-EGLAWRIVQ 65 (268)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHH-HHHHHHHHh
Confidence 57999999999999643 334444433
No 87
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.28 E-value=0.29 Score=41.02 Aligned_cols=73 Identities=10% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|+++.-++.+++.|.+. ...+..++++.+..++...++ ..++|||+| .+....+++..+++
T Consensus 27 ~~k~iIF~~~~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T------~~~~~Gid~~~~~~ 98 (168)
T d1t5ia_ 27 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT------NLFGRGMDIERVNI 98 (168)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES------SCCSTTCCGGGCSE
T ss_pred CCeEEEEEeeeecchhhhhhhccc--cccccccccccchhhhhhhhhhhccccceeeecc------ccccchhhcccchh
Confidence 457999999999999999999886 467888888888776655443 358999999 23345567888888
Q ss_pred EEEcc
Q 007085 249 VVLDE 253 (618)
Q Consensus 249 vViDE 253 (618)
||.=+
T Consensus 99 vi~~~ 103 (168)
T d1t5ia_ 99 AFNYD 103 (168)
T ss_dssp EEESS
T ss_pred hhhhh
Confidence 87433
No 88
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=92.26 E-value=0.59 Score=41.37 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHhC-----CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007085 130 LEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (618)
Q Consensus 130 i~~i~~-----~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~ 195 (618)
++.++. +.-++|.+++|+|||..++..+.+.+. .+..+++++-. +-..++.+.+..
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~---------~~~~~~~is~e-~~~~~~~~~~~~ 75 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA---------NKERAILFAYE-ESRAQLLRNAYS 75 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---------TTCCEEEEESS-SCHHHHHHHHHT
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH---------hccccceeecc-CCHHHHHHHHHH
Confidence 445554 356899999999999866555554432 24567777642 223334444443
No 89
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.24 E-value=0.43 Score=39.83 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=56.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh----cCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
..++||.|.++.-+..++..+.+. ++.+..+++..+...+...+. ....|+||| .+....+++.++.+
T Consensus 32 ~~~~lIF~~~~~~~~~l~~~l~~~--~~~~~~~hg~~~~~~R~~~~~~F~~g~~~ilv~T------d~~~~Gid~~~v~~ 103 (168)
T d2rb4a1 32 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT------NVCARGIDVKQVTI 103 (168)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC------CSCCTTTCCTTEEE
T ss_pred CCcEEEEcCHHHHHHHHHHHHHhc--CCcceecccchhhHHHHHHhhhhcCCceeeeech------hhhhhhhccccccE
Confidence 468999999999999999988875 577888899888777655443 458999999 34455677888998
Q ss_pred EEE
Q 007085 249 VVL 251 (618)
Q Consensus 249 vVi 251 (618)
||.
T Consensus 104 Vi~ 106 (168)
T d2rb4a1 104 VVN 106 (168)
T ss_dssp EEE
T ss_pred EEe
Confidence 884
No 90
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=90.78 E-value=0.1 Score=50.11 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|||+|||..+
T Consensus 69 ~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred cceeeeCCCCccHHHHH
Confidence 57999999999999855
No 91
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=90.76 E-value=0.014 Score=51.25 Aligned_cols=92 Identities=12% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCeEEEEcCcHHHH--------HHHHHHH-HHhCCCCceEEEEcCCchHHHHHH---h-hcCCCEEEEChHHHHHHHHhc
Q 007085 173 NPLCLVLAPTRELA--------KQVEKEF-HESAPSLDTICVYGGTPISHQMRA---L-DYGVDAVVGTPGRVIDLIKRN 239 (618)
Q Consensus 173 ~~~~lil~Pt~~La--------~q~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~l~~~ 239 (618)
+.++.||||..+-. .+.++.+ +.++|..++.++||..+..+.... . +...+||||| .+-..
T Consensus 29 g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaT------tViE~ 102 (206)
T d1gm5a4 29 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST------TVIEV 102 (206)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS------SCCCS
T ss_pred CCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEe------hhhhc
Confidence 67899999975332 2233333 345677788888988765544333 2 3459999999 45556
Q ss_pred CCCCCCcceEEEccchhccCCCcHHHHHHHHHHCC
Q 007085 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (618)
Q Consensus 240 ~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~ 274 (618)
.+++.+..++|+..++++ -..++..+.-+..
T Consensus 103 GIDip~a~~iii~~a~~f----glsqlhQlrGRvG 133 (206)
T d1gm5a4 103 GIDVPRANVMVIENPERF----GLAQLHQLRGRVG 133 (206)
T ss_dssp CSCCTTCCEEEBCSCSSS----CTTHHHHHHHTSC
T ss_pred cccccCCcEEEEEccCCc----cHHHHHhhhhhee
Confidence 778999999999999986 2456666666654
No 92
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=90.74 E-value=0.16 Score=47.03 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=47.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..++||+||+..-++++++.|++.. .+++++++.....++........+|||+| .+....+.+ ++.+||
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g--~~V~~l~~~~~~~e~~~~~~~~~~~~~~t------~~~~~~~~~-~~~~vi 104 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAG--KSVVVLNRKTFEREYPTIKQKKPDFILAT------DIAEMGANL-CVERVL 104 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEECCSSSCC--------CCCSEEEES------SSTTCCTTC-CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCcCcHhHHhhhhcCCcCEEEEe------chhhhceec-CceEEE
Confidence 4579999999999999999999874 56888888777666666556668999999 334445556 576665
No 93
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=90.32 E-value=0.077 Score=50.01 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=38.5
Q ss_pred HHHHHcCCCC---ChHHHHHHHHH-HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHH
Q 007085 112 AALARRGISK---LFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (618)
Q Consensus 112 ~~l~~~~~~~---l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 185 (618)
..|...++.. ..+.+...+.. +..++++||+++||||||. ++.+++..+ ....+++.+-.+.||
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT-~l~al~~~i---------~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTT-YIKSIMEFI---------PKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHH-HHHHHGGGS---------CTTCCEEEEESSCCC
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchH-HHHHHhhhc---------ccccceeeccchhhh
Confidence 3444554433 23444444444 4557899999999999997 344544433 124567777666565
No 94
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=89.66 E-value=0.19 Score=40.66 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vV 250 (618)
..++||.|+|+.-++++++.|++. .+.+..++++.....+ .+...+||||| +. ....++ .++++||
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~~--G~~~~~~H~~~~~~~~---~~~~~~vlvaT-----d~-~~~GiD-~~v~~Vi 100 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVAL--GINAVAYYRGLDVSVI---PTNGDVVVVAT-----DA-LMTGFT-GDFDSVI 100 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHH--TCEEEEECTTCCSCCC---TTSSCEEEEES-----SS-SCSSSC-CCBSEEE
T ss_pred CCCEEEEeCcHHHHHHHHHHHhcc--ccchhhhhccchhhhh---hhhhcceeehh-----HH-HHhccc-cccceEE
Confidence 457999999999999999999887 4777888877664432 23458999999 33 333455 5788887
No 95
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=89.46 E-value=0.17 Score=49.15 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHhCCCC--EEEEccCCChhHHHHHHHHHHHH
Q 007085 122 LFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 122 l~~~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+.+.|.+.+..++.... +|+.+|||||||.+. ..++..+
T Consensus 142 ~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~ 182 (401)
T d1p9ra_ 142 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 182 (401)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred ccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHH-HHHhhhh
Confidence 45777777777776554 899999999999754 5555554
No 96
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.38 E-value=0.27 Score=44.11 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=29.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCChHH-HHHHHHHH-----hCCCCEEEEccCCChhHHHH
Q 007085 99 LDISKLDISQDIVAALARRGISKLFPI-QKAVLEPA-----MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~-Q~~~i~~i-----~~~~~~li~~~tGsGKT~~~ 153 (618)
..|+++...+..++.|+..--. +.. ....+... .....+|+.||+|+|||.++
T Consensus 11 ~~~~dlig~~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a 69 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKNWLAN--WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 69 (253)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT--HHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHHh--hhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHH
Confidence 3577888888877776542100 010 00111111 11146999999999999754
No 97
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=89.37 E-value=0.12 Score=48.34 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+++|+.+|||+|||+.+
T Consensus 49 ~~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999855
No 98
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=89.32 E-value=0.51 Score=42.75 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=15.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
+++.||+|+|||.++ -.++..+.
T Consensus 49 l~l~GppGtGKT~l~-~~l~~~l~ 71 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLA-KFTVKRVS 71 (287)
T ss_dssp EECTTCCSSSHHHHH-HHHHHHHH
T ss_pred EEeECCCCCCHHHHH-HHHHHHHH
Confidence 456799999999754 44454543
No 99
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.50 E-value=0.42 Score=40.04 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=19.2
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIK 163 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~ 163 (618)
++++|.+|+|+|||.. +..++..+..
T Consensus 2 k~v~ItG~~GtGKTtl-~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTL-IHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHH-HHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 6799999999999973 3455555543
No 100
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=86.20 E-value=0.96 Score=39.04 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=53.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccc-cCCCCCCc
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA-RGLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~-~GlDi~~~ 412 (618)
+-++||.|++++.+..+.+.+.+ ...+..+++..+..++.+.+ + ..+|||+|+ .+. ..+++.++
T Consensus 72 ~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l---~--~~~IlV~TP~~l~~~l~~~~~~~~~l 146 (208)
T d1hv8a1 72 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHINRGTLNLKNV 146 (208)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc---C--CCCEEEEChHHHHHHHHcCCCCcccC
Confidence 45899999999999998887754 35677888887776655444 2 368999995 333 34789999
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.++|.....
T Consensus 147 ~~lViDEad 155 (208)
T d1hv8a1 147 KYFILDEAD 155 (208)
T ss_dssp CEEEEETHH
T ss_pred cEEEEEChH
Confidence 998875544
No 101
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=85.83 E-value=0.58 Score=42.38 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=35.7
Q ss_pred HHHHhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhc--CCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 130 i~~i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~--~~~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
++-++.+.-.+|.+++|+|||..++..++ .+....... ......+++++.- ..-..++.+++..+
T Consensus 23 i~G~~pg~~~~i~G~~G~GKS~l~l~la~-~ia~g~~~~~~~~~~~~~vl~~~~-E~~~~~~~~Rl~~~ 89 (274)
T d1nlfa_ 23 LPNMVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPA-EDPPTAIHHRLHAL 89 (274)
T ss_dssp ETTEETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEES-SSCHHHHHHHHHHH
T ss_pred hCCccCCcEEEEEeCCCCCHHHHHHHHHH-HHHcCCCcccccccCCCceEEEec-cchHHHHHHHHHHH
Confidence 44555666789999999999975544333 443311110 0112345666653 23344555565554
No 102
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=85.83 E-value=0.3 Score=47.93 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
..++++|.++||+|||..+ ..++..+..+ +..++|+=|.-++..
T Consensus 49 ~~~H~~I~G~tGsGKT~~l-~~li~~~~~~--------g~~~iiiD~kge~~~ 92 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--------GDRMVIVDPNGDMLS 92 (433)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--------TCEEEEEEETTHHHH
T ss_pred ccceEEEEeCCCCcHHHHH-HHHHHHHHhC--------CCCEEEEeCChhHHH
Confidence 3468999999999999754 4445444431 556888888776543
No 103
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=85.77 E-value=1.5 Score=39.45 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=31.3
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l 193 (618)
++-+.+.++.|+|||..++..+..... .+..+++|-.-..+..++++.+
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q~---------~g~~~vyIDtE~~~~~e~a~~~ 108 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQA---------AGGVAAFIDAEHALDPDYAKKL 108 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHHH---------TTCEEEEEESSCCCCHHHHHHH
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHhc---------CCCEEEEEECCccCCHHHHHHh
Confidence 355899999999999876655543322 2567777765444544444443
No 104
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=85.74 E-value=1.2 Score=39.94 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=32.1
Q ss_pred HHHHHhC-C-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHH
Q 007085 129 VLEPAMQ-G-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (618)
Q Consensus 129 ~i~~i~~-~-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~ 189 (618)
+++.++. + +-+.+.+|+|+|||..++..+...... +..++|+---..+..++
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~---------g~~~vyidtE~~~~~~~ 98 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHALDPIY 98 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSCCCCHHH
T ss_pred HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcC---------CCEEEEEccccccCHHH
Confidence 4555553 3 458999999999998765555544321 45677765443333333
No 105
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=83.74 E-value=0.21 Score=49.07 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+|+|+.+|||+|||+.+
T Consensus 49 ksNILliGPTGvGKTlLA 66 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIA 66 (443)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cccEEEECCCCCCHHHHH
Confidence 368999999999999854
No 106
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=81.42 E-value=8.2 Score=36.38 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=59.1
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH-----HHHHHHHHhC----CC-CceEEEE
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK-----QVEKEFHESA----PS-LDTICVY 206 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~-----q~~~~l~~~~----~~-~~~~~~~ 206 (618)
.|.|+.++.|.|||... -.+...+.+... ...-.+.+++.+-+..-++- +|.+.++.+. .. -.++++.
T Consensus 44 ~n~llvG~~GvGKtaiv-~~la~~i~~~~v-p~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfi 121 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIV-EGLAQRIVKGDV-PEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI 121 (387)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHHHHTCS-CTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCeEECCCCCCHHHHH-HHHHHHHHhCCC-CHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEe
Confidence 56999999999999743 333444444221 11122455666666554442 4555554332 11 1233322
Q ss_pred cCC-------------ch-HHHHHHhhcC-C-CEEEEChHHHHHHHHhcCCCCCCcceEEEccchh
Q 007085 207 GGT-------------PI-SHQMRALDYG-V-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (618)
Q Consensus 207 ~~~-------------~~-~~~~~~~~~~-~-~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~ 256 (618)
... .. ..-...+..+ . -|..|||+.+.. +.++.-..+.|..|-|+|-+.
T Consensus 122 de~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~e~d~al~rrF~~v~v~ep~~ 186 (387)
T d1qvra2 122 DELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTV 186 (387)
T ss_dssp CCC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCH
T ss_pred ccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHH-hcccHHHHHhcccccCCCCcH
Confidence 111 10 0111122233 3 466678888865 555555577899999999884
No 107
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=81.17 E-value=2.8 Score=36.65 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=52.0
Q ss_pred HHHhhcCCcEEEEecchhHHHHHHHHHHhc-----CC----eeeecCcCCHHHHHHHHHHHhcCCccEEEEcCc-cccC-
Q 007085 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-----YN----CEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AARG- 406 (618)
Q Consensus 338 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~----~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~-~~~G- 406 (618)
+....++.++||.+|++.-++.+++.+.+. +. +..+++.....++.+.+.... ..+|||+|.- +...
T Consensus 80 ~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~Ilv~Tp~~l~~~~ 157 (237)
T d1gkub1 80 LFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR--NFKIVITTTQFLSKHY 157 (237)
T ss_dssp HHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG--GCSEEEEEHHHHHHCS
T ss_pred HHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccc--ccceeccChHHHHHhh
Confidence 334446779999999999999998877541 22 334566666666666555443 3578999852 3332
Q ss_pred CCCCCccEEEEcC
Q 007085 407 LDVPNVDLIIHYE 419 (618)
Q Consensus 407 lDi~~~~~VI~~~ 419 (618)
.++.++++||.-.
T Consensus 158 ~~~~~~~~vVvDE 170 (237)
T d1gkub1 158 RELGHFDFIFVDD 170 (237)
T ss_dssp TTSCCCSEEEESC
T ss_pred hhcCCCCEEEEEC
Confidence 4566788877633
No 108
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.54 E-value=2.2 Score=37.05 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=53.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC------ccccCCCCCCc
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD------VAARGLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~------~~~~GlDi~~~ 412 (618)
.-+++|+|++++-+..+++.+.+ .+.+..+.++.+..+....++ . ...|||+|+ .....+++.++
T Consensus 85 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~---~-~~~Ilv~TPgrl~~~~~~~~~~~~~l 160 (222)
T d2j0sa1 85 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-GQHVVAGTPGRVFDMIRRRSLRTRAI 160 (222)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhc---c-CCeEEeCCCCcHHhcccccccccccc
Confidence 34689999999999999887744 357777888877665544432 2 368999995 22455788889
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.++|.-.++
T Consensus 161 ~~lVlDEaD 169 (222)
T d2j0sa1 161 KMLVLDEAD 169 (222)
T ss_dssp CEEEEETHH
T ss_pred eeeeecchh
Confidence 998865443
No 109
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=80.25 E-value=0.47 Score=38.78 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+++++.|++|+|||.++-
T Consensus 3 k~I~l~G~~GsGKSTvak 20 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGR 20 (169)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998653
No 110
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=80.08 E-value=0.12 Score=46.75 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.0
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007085 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (618)
+..+.-+.|.+++|||||.
T Consensus 41 i~~Ge~vaivG~sGsGKST 59 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKST 59 (255)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3456779999999999997
No 111
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=79.94 E-value=1.4 Score=38.64 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||..+
T Consensus 36 ~~~Ll~GPpG~GKTtla 52 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLA 52 (239)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47999999999999855
No 112
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=79.93 E-value=1.9 Score=37.67 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.++|+.+|+|+|||.++
T Consensus 36 ~~~L~~GPpGtGKT~lA 52 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLA 52 (238)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 47999999999999855
No 113
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=79.42 E-value=0.17 Score=45.25 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.9
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007085 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (618)
+..+..+.|.+++|||||.
T Consensus 26 i~~Ge~vaIvG~sGsGKST 44 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKST 44 (241)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3456779999999999997
No 114
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=78.02 E-value=2.3 Score=38.18 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=32.5
Q ss_pred HHHHHhC-C-----CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHH
Q 007085 129 VLEPAMQ-G-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (618)
Q Consensus 129 ~i~~i~~-~-----~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~ 191 (618)
+++.++. + +-+.+.++.+||||..++..+... .+ .+..++|+-.-..+..++++
T Consensus 44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~a-qk--------~g~~v~yiDtE~~~~~~~a~ 103 (268)
T d1xp8a1 44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA-QK--------AGGTCAFIDAEHALDPVYAR 103 (268)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH-HH--------TTCCEEEEESSCCCCHHHHH
T ss_pred HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHH-Hh--------CCCEEEEEECCccCCHHHHH
Confidence 4555554 3 448899999999998665544433 22 14567777654344343333
No 115
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=77.85 E-value=0.48 Score=39.32 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
+++++|.|++|||||+++
T Consensus 5 ~~~I~i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMA 22 (174)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 467999999999999854
No 116
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.67 E-value=1.4 Score=37.82 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=52.4
Q ss_pred CcEEEEecchhHHHHHHHHHHh------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccc-cCCCCCCc
Q 007085 345 GKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA-RGLDVPNV 412 (618)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~-~GlDi~~~ 412 (618)
-+++|.+++++.+..+++.+.. .+.+..++++.+..... ..+.+...+|||+|+ .+. ..+++.++
T Consensus 70 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l 146 (207)
T d1t6na_ 70 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 146 (207)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHH---HHHHhcCCCEEEeCcchhhhhccCCceecccc
Confidence 4799999999999988887754 23466667776655443 334456788999996 233 34788899
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.++|...+.
T Consensus 147 ~~lVlDEaD 155 (207)
T d1t6na_ 147 KHFILDECD 155 (207)
T ss_dssp CEEEEESHH
T ss_pred ceeehhhhh
Confidence 988875554
No 117
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=77.54 E-value=0.62 Score=38.45 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.6
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
-++++|.|++|||||+++
T Consensus 4 ~~~I~i~G~pGsGKTTia 21 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLG 21 (173)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467999999999999855
No 118
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=76.65 E-value=0.49 Score=42.85 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.1
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
.+.+|+.+|.|+|||..+
T Consensus 41 ~~giLL~Gp~GtGKT~l~ 58 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLA 58 (265)
T ss_dssp CCEEEEBCCTTSSHHHHH
T ss_pred CCeEEEECCCCCcchhHH
Confidence 356999999999999743
No 119
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=75.98 E-value=7.7 Score=34.70 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=49.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCch--------HHH---HHHhh-cCCCEEEEChHHHHHHHHhcC
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI--------SHQ---MRALD-YGVDAVVGTPGRVIDLIKRNA 240 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~--------~~~---~~~~~-~~~~Ilv~T~~~l~~~l~~~~ 240 (618)
..++||+|.++..+..+++.|.+. .+.+..+++.... ..+ ...+. ..++|||+| .+....
T Consensus 161 ~~k~iiF~~~~~~~~~~~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T------~~~~~G 232 (286)
T d1wp9a2 161 NSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT------SVGEEG 232 (286)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC------GGGGGG
T ss_pred CCcEEEEeCcHHhHHHHHHHHHHc--CCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEc------cceecc
Confidence 568999999999999999999875 3555555443221 122 22222 358999999 344556
Q ss_pred CCCCCcceEEEcc
Q 007085 241 LNLSEVQFVVLDE 253 (618)
Q Consensus 241 ~~~~~~~~vViDE 253 (618)
+++.++++||.=+
T Consensus 233 ld~~~~~~Vi~~d 245 (286)
T d1wp9a2 233 LDVPEVDLVVFYE 245 (286)
T ss_dssp GGSTTCCEEEESS
T ss_pred ccCCCCCEEEEeC
Confidence 7899999999533
No 120
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=75.82 E-value=2 Score=41.94 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=39.4
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHHHHHhhhcC--C-CCCCeEEEEcCcHHHHHHHHHHHHHh
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--R-GRNPLCLVLAPTRELAKQVEKEFHES 196 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~--~-~~~~~~lil~Pt~~La~q~~~~l~~~ 196 (618)
..+||.|..|||||.+.+.=++..+........ . -....+|+|+=|+.-|..+.+++.+.
T Consensus 17 g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~ 79 (485)
T d1w36b1 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (485)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHHH
Confidence 469999999999998766556555543211100 0 01235899999998888877776543
No 121
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=75.50 E-value=3 Score=35.54 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=44.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCC----------------------------CceEEEEcCCchHHHHHH---hh-c
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPS----------------------------LDTICVYGGTPISHQMRA---LD-Y 220 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~----------------------------~~~~~~~~~~~~~~~~~~---~~-~ 220 (618)
+.++||.||++..+...+..+.+.... ..+...+++.+...+... .+ .
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g 119 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 119 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCC
Confidence 456899999987777777666543210 124556667665544322 22 3
Q ss_pred CCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 221 ~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
..+|||||. .....+++....+||.|
T Consensus 120 ~i~vlvaT~------~l~~Gin~p~~~vvi~~ 145 (201)
T d2p6ra4 120 NIKVVVATP------TLAAGVNLPARRVIVRS 145 (201)
T ss_dssp SCCEEEECS------TTTSSSCCCBSEEEECC
T ss_pred CceEEEech------HHHhhcCCCCceEEEec
Confidence 489999992 23345667666666643
No 122
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=75.45 E-value=0.43 Score=43.12 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=14.4
Q ss_pred CCCEEEEccCCChhHHH
Q 007085 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (618)
.+.++|.||.|+|||..
T Consensus 29 ~~~i~i~G~~G~GKTsL 45 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSI 45 (283)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CCEEEEEcCCCCcHHHH
Confidence 35688999999999974
No 123
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=74.60 E-value=1 Score=38.67 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
+.+.+++|+||--.-+|......+.+.+..+.....+++++.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~ 183 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 183 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 5678899999998777776666555555444333445555555
No 124
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=74.56 E-value=0.69 Score=41.50 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=17.5
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
.++++.+|+|+|||.++ -.++..+
T Consensus 44 ~~lll~GppGtGKT~l~-~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL-RKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CceEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999754 3344443
No 125
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=73.63 E-value=1 Score=40.38 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=14.0
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+|+.||+|+|||..+
T Consensus 34 ~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999854
No 126
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=73.55 E-value=9.5 Score=33.08 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC------ccccCCCCCCc
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD------VAARGLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~------~~~~GlDi~~~ 412 (618)
.-++||.|++++.+..+++.+.. .+.+..+.++....++.+ ......+|||+|+ .-...+++.++
T Consensus 98 ~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v 173 (238)
T d1wrba1 98 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR----EVQMGCHLLVATPGRLVDFIEKNKISLEFC 173 (238)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH----HHSSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHh----hcccCCceeecCHHHHHhHHccCceecccc
Confidence 34799999999999998876643 366777777766554422 2345689999996 22345788889
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.++|..+..
T Consensus 174 ~~lViDEaD 182 (238)
T d1wrba1 174 KYIVLDEAD 182 (238)
T ss_dssp CEEEEETHH
T ss_pred ceeeeehhh
Confidence 988865543
No 127
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=72.73 E-value=0.97 Score=35.97 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=33.5
Q ss_pred ceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEe
Q 007085 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (618)
Q Consensus 247 ~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~ 306 (618)
..+|+|=||.... ....+..+....+...-++++..+-.++...++..+......+.+
T Consensus 11 ~~iilD~AHN~~a--~~~l~~~l~~~~~~~~~~~i~g~~~dkd~~~~l~~l~~~~~~i~~ 68 (137)
T d1o5za1 11 KMYILDGAHNPHG--AESLVRSLKLYFNGEPLSLVIGILDDKNREDILRKYTGIFERVIV 68 (137)
T ss_dssp EEEEECCCCSHHH--HHHHHHHHHHHCTTCCEEEEECCCTTSCHHHHHGGGTTTCSEEEE
T ss_pred CEEEEECCCCHHH--HHHHHHHHHhhhccccceeeecccccccHHHHHHHHHhhcceeee
Confidence 3578999997432 222233333344444555666666677777777766555544433
No 128
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=72.42 E-value=1.6 Score=39.24 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=27.2
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
+..+.-++|.|++|+|||..++..+++.... .+.+++++..
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~--------~g~~v~~~s~ 72 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--------MGKKVGLAML 72 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHT--------SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhh--------cccceeEeee
Confidence 4456679999999999997554444433222 2556888874
No 129
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=72.21 E-value=0.78 Score=37.01 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.1
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+++.+++|||||..+
T Consensus 5 Iii~G~pGsGKTTla 19 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999844
No 130
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=71.88 E-value=0.79 Score=37.73 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.|++|||||+++
T Consensus 4 lI~i~G~~GsGKTTva 19 (176)
T d2bdta1 4 LYIITGPAGVGKSTTC 19 (176)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 131
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.57 E-value=1.6 Score=37.38 Aligned_cols=30 Identities=23% Similarity=0.081 Sum_probs=21.1
Q ss_pred HHHHHhC-----CCCEEEEccCCChhHHHHHHHHH
Q 007085 129 VLEPAMQ-----GRDMIGRARTGTGKTLAFGIPIL 158 (618)
Q Consensus 129 ~i~~i~~-----~~~~li~~~tGsGKT~~~l~~~l 158 (618)
.++.++. +.-++|.+++|+|||..++..+.
T Consensus 11 ~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 11 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3455555 35699999999999975544433
No 132
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=71.23 E-value=0.89 Score=37.58 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.4
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.++-+++.+++|||||+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455889999999999854
No 133
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=70.98 E-value=0.73 Score=38.48 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.++|.|++|+|||+.+
T Consensus 8 K~I~i~G~~GsGKTTla 24 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLV 24 (192)
T ss_dssp EEEEEECCTTSHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999844
No 134
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=70.76 E-value=0.69 Score=38.43 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.2
Q ss_pred hCCCCEEEEccCCChhHHHH
Q 007085 134 MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (618)
.++..+++++.+|||||+++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556889999999999865
No 135
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=70.17 E-value=0.95 Score=37.36 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
+.+-++|.+++|||||.++
T Consensus 2 ~~kiI~l~G~~GsGKsTva 20 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455888999999999855
No 136
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=69.90 E-value=9.2 Score=31.74 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=17.0
Q ss_pred HhCCCCEEEEccCCChhHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l 154 (618)
+.+.+-+++.+|+|||||+++-
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~ 26 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCE 26 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3445668899999999998653
No 137
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=69.34 E-value=1.2 Score=37.11 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.2
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
++++|.+++|||||+++-
T Consensus 1 m~I~i~G~pGSGKsT~a~ 18 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAE 18 (182)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 468999999999998653
No 138
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=68.74 E-value=1.4 Score=36.06 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+++++.+++|+|||.++
T Consensus 1 k~I~liG~~GsGKsTi~ 17 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLA 17 (161)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999855
No 139
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=68.61 E-value=1.9 Score=37.01 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=22.3
Q ss_pred CCEEEEcc-CCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007085 137 RDMIGRAR-TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 137 ~~~li~~~-tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (618)
+.++|++. ||.|||++.+..+. .+.+ .+.+++++=
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~-aLa~--------~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQ-AAKA--------AGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHH-HHHH--------TTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHH-HHHH--------CCCeEEEEC
Confidence 35677777 79999987654333 2222 267788874
No 140
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=67.90 E-value=1.3 Score=38.48 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=18.9
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+.-++|.+++|+|||..++-.+...+
T Consensus 26 G~~~~I~G~~G~GKT~la~~~~~~~~ 51 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFLYNGI 51 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45689999999999976554444433
No 141
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=67.56 E-value=1.4 Score=36.87 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.++|.+++|||||+++
T Consensus 1 M~I~i~G~pGSGKsT~a 17 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQA 17 (182)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35899999999999865
No 142
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=66.91 E-value=1.4 Score=36.64 Aligned_cols=17 Identities=18% Similarity=0.004 Sum_probs=14.7
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+++++.+++|||||+++
T Consensus 1 m~I~i~G~pGSGKsT~~ 17 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQA 17 (179)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46889999999999865
No 143
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=66.69 E-value=1.5 Score=36.63 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
++++|.+++|||||+++-
T Consensus 1 m~I~i~G~pGsGKsT~a~ 18 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAV 18 (181)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 468999999999998653
No 144
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=66.64 E-value=1.6 Score=36.72 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.9
Q ss_pred CCCEEEEccCCChhHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l 154 (618)
+..+++.+|+|||||+++-
T Consensus 3 ~~riil~G~pGSGKsT~a~ 21 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAP 21 (190)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 4568899999999998664
No 145
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=66.16 E-value=1.6 Score=36.63 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=15.3
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+.++|.+|+|||||+.+-
T Consensus 4 m~I~i~GppGsGKsT~a~ 21 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCE 21 (189)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998663
No 146
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=65.83 E-value=1.6 Score=36.12 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=24.3
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
..+.+++++||++..... ....+..+...+......++++..
T Consensus 97 ~~~~~vlllDE~~~~~~~-~~~~~~~l~~~l~~~~~~il~~~h 138 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HCTTCEEEECCCSTTGGG-CHHHHHHHHHHHTCTTSEEEEECC
T ss_pred hcCCCceeecCCCccchh-hHHHHHHHHHHhccCCCEEEEEEc
Confidence 457789999998865433 233444455555544455555443
No 147
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=64.43 E-value=2.2 Score=37.42 Aligned_cols=24 Identities=17% Similarity=-0.101 Sum_probs=18.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILD 159 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~ 159 (618)
++-++|.+++|+|||..++..+.+
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999866544443
No 148
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=64.36 E-value=1.3 Score=36.06 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=24.6
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (618)
+++.++.|+|||. +.-.++..+ +..--|-.||=.|++
T Consensus 36 i~L~G~LGaGKTt-fvr~~~~~l-----------g~~~~V~SPTF~l~~ 72 (158)
T d1htwa_ 36 VYLNGDLGAGKTT-LTRGMLQGI-----------GHQGNVKSPTYTLVE 72 (158)
T ss_dssp EEEECSTTSSHHH-HHHHHHHHT-----------TCCSCCCCCTTTCEE
T ss_pred EEEecCCCccHHH-HHHHHHhhc-----------ccccccCCCceEEEE
Confidence 7789999999996 555665554 222346788855543
No 149
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}
Probab=63.67 E-value=4.3 Score=32.89 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=16.0
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
+-|.+..|||||+ .+-.++..+.
T Consensus 4 i~I~G~~gSGKTT-li~~l~~~L~ 26 (165)
T d1xjca_ 4 WQVVGYKHSGKTT-LMEKWVAAAV 26 (165)
T ss_dssp EEEECCTTSSHHH-HHHHHHHHHH
T ss_pred EEEEeCCCCCHHH-HHHHHHHHHH
Confidence 3489999999997 3344555544
No 150
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=63.44 E-value=5 Score=35.22 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=42.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCC-cceEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE-VQFVV 250 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~-~~~vV 250 (618)
+..+||.|+|+..++.+++.+.+.+. .-+.-..............++|||||... ..+....+++.+ +++||
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~~~h----g~~~~~~R~~~~~~f~~g~~~vLVaT~a~--~~v~~rGlDip~~v~~VI 97 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKNKFR----IGIVTATKKGDYEKFVEGEIDHLIGTAHY--YGTLVRGLDLPERIRFAV 97 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTSSC----EEECTTSSSHHHHHHHHTSCSEEEEECC--------CCSCCTTTCCEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHhCCCeEEEEeccc--cchhhhccCccccccEEE
Confidence 45699999999999988887765421 11111111122223334568999999431 012334667765 99999
No 151
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=62.73 E-value=2.2 Score=35.13 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=15.1
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+.+++.+++|||||+++-
T Consensus 3 ~~Iil~G~~GsGKSTia~ 20 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGR 20 (170)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 468899999999998653
No 152
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=62.72 E-value=37 Score=27.63 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=52.3
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhc-----CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----c-cccCCCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKS-----YNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----V-AARGLDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~-~~~GlDi~~ 411 (618)
.+.++|+++|++.-++..++.+.+. ..+..+|++....++...... ..++++|. . ...-+...+
T Consensus 51 ~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~i~t~~~~~~~~~~~~~~~~~ 125 (200)
T d1wp9a1 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAGRISLED 125 (200)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTTSCCTTS
T ss_pred cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhhc-----ccccccccchhHHHHhhhhhhccc
Confidence 4678999999999999888887652 456777888888887766543 35788884 1 223355667
Q ss_pred ccEEEEcCCC
Q 007085 412 VDLIIHYELP 421 (618)
Q Consensus 412 ~~~VI~~~~p 421 (618)
+++||.-.+.
T Consensus 126 ~~~vIiDE~H 135 (200)
T d1wp9a1 126 VSLIVFDEAH 135 (200)
T ss_dssp CSEEEEETGG
T ss_pred cceEEEEehh
Confidence 8888865544
No 153
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.56 E-value=10 Score=31.97 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=51.1
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh------cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----cc-ccCCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VA-ARGLDVP 410 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~-~~GlDi~ 410 (618)
+.-++||.|++++.+..+++.+.. ...+..++++....++...+ ....+|+|+|+ .+ ...+++.
T Consensus 70 ~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~ivv~TPgrl~~~~~~~~~~~~ 145 (206)
T d1veca_ 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred cCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHH----HhccCeEEeCCccccccccchhcccc
Confidence 345799999999999998887743 23455666676655543333 45688999995 22 3347788
Q ss_pred CccEEEEcCCC
Q 007085 411 NVDLIIHYELP 421 (618)
Q Consensus 411 ~~~~VI~~~~p 421 (618)
++.++|...+.
T Consensus 146 ~l~~lVlDEaD 156 (206)
T d1veca_ 146 HVQMIVLDEAD 156 (206)
T ss_dssp TCCEEEEETHH
T ss_pred ccceEEEeccc
Confidence 89988864443
No 154
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=62.51 E-value=9.4 Score=32.15 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=54.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----cc-ccCCCCCC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VA-ARGLDVPN 411 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~-~~GlDi~~ 411 (618)
.....++.+++...+......+.. .+.+...++..........+ .....|||+|+ .+ ...+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~Ili~TP~~l~~~l~~~~~~l~~ 143 (206)
T d1s2ma1 68 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSD 143 (206)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred ccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHh----cccceEEEECCcccccccccceeeccc
Confidence 355788999999988877776643 46788888888776654433 45689999996 23 34578889
Q ss_pred ccEEEEcCCCC
Q 007085 412 VDLIIHYELPN 422 (618)
Q Consensus 412 ~~~VI~~~~p~ 422 (618)
+.++|.-++..
T Consensus 144 l~~lV~DEaD~ 154 (206)
T d1s2ma1 144 CSLFIMDEADK 154 (206)
T ss_dssp CCEEEEESHHH
T ss_pred ceEEEeechhh
Confidence 99988755543
No 155
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=62.22 E-value=1.6 Score=35.75 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=13.3
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+++.+++|||||.++
T Consensus 9 ivl~G~~GsGKsT~a 23 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVA 23 (171)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999865
No 156
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=62.19 E-value=2.9 Score=35.94 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=45.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC------ccccCCCCCCc
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD------VAARGLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~------~~~~GlDi~~~ 412 (618)
.-.++|+|++++.+..++..+.. ...+..+++..+..++...+ ...+|+|+|+ .-...+++.++
T Consensus 78 ~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~IvI~TP~~l~~~~~~~~~~l~~l 152 (212)
T d1qdea_ 78 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPGRVFDNIQRRRFRTDKI 152 (212)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh-----cCCcEEEECCCccccccccCceecCcc
Confidence 45899999999999998887744 23444555554443332221 2468999995 23455789999
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.++|...+.
T Consensus 153 ~~lVlDEad 161 (212)
T d1qdea_ 153 KMFILDEAD 161 (212)
T ss_dssp CEEEEETHH
T ss_pred eEEeehhhh
Confidence 998875544
No 157
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=62.06 E-value=1.3 Score=41.46 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=15.5
Q ss_pred CCCCEEEEccCCChhHHH
Q 007085 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~ 152 (618)
.++++|+.+++|+|||..
T Consensus 27 ~~h~vLl~G~pG~GKT~l 44 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTA 44 (333)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCCeEEEECCCCccHHHH
Confidence 346899999999999974
No 158
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=61.90 E-value=2.2 Score=35.88 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.4
Q ss_pred CCEEEEccCCChhHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l 154 (618)
+.++|.+++|||||+.+-
T Consensus 7 mrIiliG~PGSGKtT~a~ 24 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSS 24 (189)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 578999999999998653
No 159
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.60 E-value=1.9 Score=37.64 Aligned_cols=21 Identities=19% Similarity=-0.072 Sum_probs=16.7
Q ss_pred CCCEEEEccCCChhHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIP 156 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~ 156 (618)
++-++|.+++|+|||..++-.
T Consensus 34 G~~~li~G~pGsGKT~l~lq~ 54 (251)
T d1szpa2 34 GSITELFGEFRTGKSQLCHTL 54 (251)
T ss_dssp SSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 456999999999999855443
No 160
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.00 E-value=2.3 Score=35.32 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.8
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+++.+++|||||+++
T Consensus 3 mrIvl~G~pGSGKtT~a 19 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQA 19 (180)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999865
No 161
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.54 E-value=1.2 Score=37.46 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=13.9
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+.+++++++|||||.++
T Consensus 20 ~vI~L~G~pGSGKTTiA 36 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVS 36 (195)
T ss_dssp EEEEEESSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678899999999855
No 162
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=59.05 E-value=3 Score=36.81 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHhCCCCEEEEccCCChhHHHH
Q 007085 131 EPAMQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (618)
........++|.+++|+|||.++
T Consensus 18 ~~a~~~~pvlI~Ge~GtGK~~~A 40 (247)
T d1ny5a2 18 KISCAECPVLITGESGVGKEVVA 40 (247)
T ss_dssp HHTTCCSCEEEECSTTSSHHHHH
T ss_pred HHhCCCCCEEEECCCCcCHHHHH
Confidence 33445677999999999999744
No 163
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.55 E-value=3.2 Score=38.30 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.5
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++++.+ ++..++||||||.+.
T Consensus 67 lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 67 IVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHcCCCcceeeecccCCCCceec
Confidence 4667778876 788999999999865
No 164
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.33 E-value=3.4 Score=36.09 Aligned_cols=56 Identities=9% Similarity=-0.046 Sum_probs=30.0
Q ss_pred CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007085 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~ 194 (618)
+.-++|.+++|+|||..++..+.+.... .........++++.....+..++...+.
T Consensus 37 G~~~~i~G~~GsGKT~lalq~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (258)
T d1v5wa_ 37 MAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTENTFRPDRLRDIA 92 (258)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhh---hhcccccceEEEechHHHHHHHHHHHHH
Confidence 3569999999999998665444332211 0011123456666554444444444443
No 165
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=57.23 E-value=5.3 Score=32.12 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=16.1
Q ss_pred CEEEEccCCChhHHHHHHHHHHHH
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
.+.|+++.|||||+ .+-.++..+
T Consensus 4 vi~itG~~GSGKTT-L~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTT-LLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHH-HHHHHHHHH
T ss_pred EEEEEcCCCCCHHH-HHHHHHHHH
Confidence 36889999999997 334444444
No 166
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=57.07 E-value=3 Score=33.99 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.4
Q ss_pred CEEEEccCCChhHHHHH
Q 007085 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l 154 (618)
++++.+++|+|||.++-
T Consensus 3 ~IvliG~~G~GKSTig~ 19 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGR 19 (165)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 57888999999998653
No 167
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=56.91 E-value=8 Score=34.65 Aligned_cols=38 Identities=11% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+.++||.|+++..++++++.|.+. .+++..++++.+..
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~--Gi~a~~~Hgglsq~ 73 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVAL--GINAVAYYRGLDVS 73 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCGG
T ss_pred CCCEEEECCcHHHHHHHHHHHHHC--CCCEEEEeCCchHH
Confidence 568999999999999999999886 46777777776543
No 168
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=56.37 E-value=8.5 Score=29.46 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=48.0
Q ss_pred eEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHHHHhcCCCcEEEeccCCc--ccccCC-eEEEEEe
Q 007085 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD--QKLADG-ISLYSIA 324 (618)
Q Consensus 248 ~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~-~~~~~~~ 324 (618)
.||+|=||.-.. ...+.+.++.+.....++++.++-.++...++..+......+.++.... ...... .......
T Consensus 13 ~iilD~AHN~~~---~~~l~~~l~~~~~~~~~~v~g~~~dKd~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (129)
T d2gc6a1 13 LIVIDGAHNPDG---INGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEALHEG 89 (129)
T ss_dssp TEEECCCCSHHH---HHHHHHHHHHHCSSCCEEEECCC----CCSSSSTTTTTCSEEEECCCTTSCCCC-----------
T ss_pred cEEEECCCCHHH---HHHHhhccccccchhhhhhccccCCccHHHHHHhhhhhCCeEEEECCCCCcccChHHHHHHHHhc
Confidence 489999997421 2222233334445556677777766655555444443333333322211 111111 1111111
Q ss_pred ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHH
Q 007085 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (618)
Q Consensus 325 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 364 (618)
.......+.+..+++.. + ...+++|-|...+-.+.+.|
T Consensus 90 ~~~~~~~~ai~~a~~~~-~-~~~vli~GS~ylvg~v~~~L 127 (129)
T d2gc6a1 90 RLKDSWQEALAASLNDV-P-DQPIVITGSLYLASAVRQTL 127 (129)
T ss_dssp CBCSCHHHHHHHHHHHC-T-TSCEEEESCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhC-C-CCcEEEEehHHHHHHHHHHh
Confidence 11222334445555443 2 34566677766666665555
No 169
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.84 E-value=2.4 Score=35.05 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=13.1
Q ss_pred CEEEEccCCChhHHH
Q 007085 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (618)
-+|++|++|||||..
T Consensus 16 liil~G~pGsGKST~ 30 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTF 30 (172)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 388999999999973
No 170
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=55.75 E-value=7.3 Score=34.96 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=42.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEECh
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 229 (618)
..+++|+||++.-+..+++.|.+.. ..+..++++..............+++|+|.
T Consensus 178 ~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~lvaT~ 232 (305)
T d2bmfa2 178 KGKTVWFVPSIKAGNDIAACLRKNG--KKVIQLSRKTFDSEYIKTRTNDWDFVVTTD 232 (305)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT--CCCEECCTTCHHHHGGGGGTSCCSEEEECG
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCC--CCEEEeCCcChHHHHhhhhccchhhhhhhH
Confidence 4579999999999999999998874 556777777665554444455689999993
No 171
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=55.68 E-value=2.5 Score=34.92 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.1
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
+-++|.|++|||||..+
T Consensus 2 kiI~i~G~~GsGKsT~~ 18 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSS 18 (190)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999743
No 172
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=55.46 E-value=3 Score=34.97 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.+|+|||||+++
T Consensus 8 iI~i~G~pGSGKsT~a 23 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999855
No 173
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.19 E-value=3.1 Score=34.97 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.7
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
-++|.+|+|||||+++
T Consensus 10 iI~i~GppGSGKsT~a 25 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQC 25 (196)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999855
No 174
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=54.51 E-value=3.9 Score=38.43 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=19.6
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++.|.+ ++..++||||||.+.
T Consensus 105 lv~~~l~G~n~tifaYGqTGSGKTyTm 131 (362)
T d1v8ka_ 105 LVQTIFEGGKATCFAYGQTGSGKTHTM 131 (362)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCceEEeeccCCCCCceee
Confidence 4566777776 667799999999875
No 175
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=53.64 E-value=18 Score=32.67 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=54.0
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhcC--Ceeee-------c-----CcCCHHHHHHHHHHHhcCCccEEEEcCcc--ccC
Q 007085 343 KGGKCIVFTQTKRDADRLAHAMAKSY--NCEPL-------H-----GDISQSQRERTLSAFRDGRFNILIATDVA--ARG 406 (618)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~l-------h-----g~~~~~~r~~i~~~f~~g~~~vLVaT~~~--~~G 406 (618)
..+++||.|++.+.++.+++.|..-. .+..+ + ......+|-+++..+.+++..|+|+|-.+ ..-
T Consensus 13 ~~~p~lvv~~~~~~A~~l~~~L~~~~~~~v~~fP~~e~lpyd~~s~~~~i~~~R~~~L~~l~~~~~~iiits~~al~~~~ 92 (308)
T d2b2na1 13 HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 92 (308)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHTTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHTBCC
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHhcCCCceEEcCCcccCccccCCCChHHHHHHHHHHHHHhhcCCceEEeechhhhhhc
Confidence 35689999999999999999996521 12211 1 11223578888888888888888887422 222
Q ss_pred CCCCC---ccEEEEcCCCCChhHHHH
Q 007085 407 LDVPN---VDLIIHYELPNTSETFVH 429 (618)
Q Consensus 407 lDi~~---~~~VI~~~~p~~~~~~~Q 429 (618)
..... ....+..+...+...+..
T Consensus 93 ~p~~~~~~~~~~l~~g~~~~~~~l~~ 118 (308)
T d2b2na1 93 CPHSFLHGHALVMKKGQRLSRDALRT 118 (308)
T ss_dssp CCHHHHHHHCEEEETTCBCCHHHHHH
T ss_pred ccHHHHHHHHHhhhhhccccHHHHHH
Confidence 22111 224566666666665543
No 176
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.45 E-value=3.5 Score=34.54 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.3
Q ss_pred CEEEEccCCChhHHHHH
Q 007085 138 DMIGRARTGTGKTLAFG 154 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l 154 (618)
-++|.+|+|||||+++-
T Consensus 3 iI~i~GppGSGKsT~a~ 19 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCA 19 (194)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998663
No 177
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=52.68 E-value=3 Score=36.34 Aligned_cols=27 Identities=15% Similarity=-0.011 Sum_probs=20.2
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
.+.-++|.+++|+|||..++..+++.+
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345689999999999986665555443
No 178
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=52.15 E-value=4.7 Score=37.71 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=20.6
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.|.+ ++..++||||||.+.
T Consensus 70 plv~~~l~G~n~ti~aYG~tgSGKT~Tm 97 (354)
T d1goja_ 70 PTVDDILNGYNGTVFAYGQTGAGKSYTM 97 (354)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhhccCceeEEecccCCCCcceee
Confidence 35667778877 677899999999864
No 179
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=51.98 E-value=32 Score=30.19 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=13.1
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+.|.+.-|.|||..+
T Consensus 47 v~I~GmgGiGKTtLA 61 (277)
T d2a5yb3 47 LFLHGRAGSGKSVIA 61 (277)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 679999999999844
No 180
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}
Probab=51.26 E-value=5.5 Score=34.41 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=14.8
Q ss_pred EEEEccCCChhHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILD 159 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~ 159 (618)
++|.++.|+|||. ++-.++.
T Consensus 3 i~v~G~~GsGKTT-Ll~~ll~ 22 (244)
T d1yrba1 3 VVFVGTAGSGKTT-LTGEFGR 22 (244)
T ss_dssp EEEECSTTSSHHH-HHHHHHH
T ss_pred EEEEcCCCCcHHH-HHHHHHH
Confidence 6889999999997 3344443
No 181
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=51.10 E-value=78 Score=27.74 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=18.5
Q ss_pred HHhCCCCEEEEccCCChhHHHHH
Q 007085 132 PAMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~l 154 (618)
.+.+++.+.|.++.|+|||...+
T Consensus 64 pig~GQr~~If~~~g~GKt~ll~ 86 (285)
T d2jdia3 64 PIGRGQRELIIGDRQTGKTSIAI 86 (285)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHH
T ss_pred CccCCCEEEeecCCCCChHHHHH
Confidence 34568899999999999997543
No 182
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}
Probab=50.66 E-value=5.1 Score=37.31 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=20.5
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..++||||||.+.
T Consensus 77 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 104 (349)
T d2zfia1 77 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 104 (349)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhccCceeeeeccCCCCCceee
Confidence 34566778876 788999999999875
No 183
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=49.88 E-value=11 Score=28.61 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q 007085 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (618)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~~~GlDi 409 (618)
...+...++. ...++||.|.+...++.+.+.|.+. +....+.. .. .+.++. +.|+...++.|+-+
T Consensus 23 ~~~L~~~i~~--~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~-~~---------~~~~~~--~~i~~~~l~~GF~~ 88 (117)
T d2eyqa2 23 LDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMR-LD---------EASDRG--RYLMIGAAEHGFVD 88 (117)
T ss_dssp THHHHHHHTT--CCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSS-GG---------GCCTTC--CEEEECCCCSCEEE
T ss_pred HHHHHHHHHh--CCCeEEEEECCccHHHHHHHHHHHcCCCceEecC-hh---------hhcCce--EEEEEecCcccccc
Confidence 3445555543 2458999999999999999999764 55443322 11 133344 45555678999988
Q ss_pred CCccEEEE
Q 007085 410 PNVDLIIH 417 (618)
Q Consensus 410 ~~~~~VI~ 417 (618)
++...+|+
T Consensus 89 ~~~~l~vI 96 (117)
T d2eyqa2 89 TVRNLALI 96 (117)
T ss_dssp TTTTEEEE
T ss_pred CCCCEEEE
Confidence 88888876
No 184
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=49.55 E-value=4.9 Score=37.37 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=20.9
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..++||||||.+.
T Consensus 71 ~lv~~~l~G~n~~i~aYGqtgSGKTyTm 98 (345)
T d1x88a1 71 PILDEVIMGYNCTIFAYGQTGTGKTFTM 98 (345)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhccCCceEEeeeeccccceEEe
Confidence 45677788876 678999999999864
No 185
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=49.33 E-value=51 Score=27.90 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHhC--CCCEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCC
Q 007085 122 LFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (618)
Q Consensus 122 l~~~Q~~~i~~i~~--~~~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~ 199 (618)
..|.|-+.+..+.+ +-..++.-.|++|-+..++. ..+ ....+++.+-...+.+....+.+.+...
T Consensus 43 ~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la---~al---------~~~g~v~tie~~~~~~~~A~~~~~~~g~- 109 (227)
T d1susa1 43 TSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATA---LAI---------PEDGKILAMDINKENYELGLPVIKKAGV- 109 (227)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHH---HHS---------CTTCEEEEEESCCHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHH---hhC---------CCCcEEEEEeccchhHHHHHHHHHHhcc-
Confidence 45677777766543 34578888899999985532 222 1134666665555554443344444321
Q ss_pred CceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcE
Q 007085 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (618)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~ 279 (618)
.....++++.....+..+.........+++|+||=.|.. +...++.++..+++.--+
T Consensus 110 -------------------~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~----y~~~~e~~~~ll~~gGii 166 (227)
T d1susa1 110 -------------------DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN----YLNYHKRLIDLVKVGGVI 166 (227)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTT----HHHHHHHHHHHBCTTCCE
T ss_pred -------------------ccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhh----hHHHHHHHHhhcCCCcEE
Confidence 122345555555554444433333456899999855532 556667777777665433
No 186
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}
Probab=47.75 E-value=5.8 Score=36.77 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=21.8
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAFG 154 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~l 154 (618)
..++.++.+.+ ++..+.||||||.+..
T Consensus 73 ~~v~~~l~G~n~~i~aYGqtgSGKT~T~~ 101 (342)
T d1f9va_ 73 QLVQSSLDGYNVCIFAYGQTGSGKTFTML 101 (342)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred hhhcchhcccccceeeeeccCCccccccc
Confidence 46777888877 6779999999998763
No 187
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.52 E-value=6 Score=33.93 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHh-----cCCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcC-----ccc-cCCCCCCc
Q 007085 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA-RGLDVPNV 412 (618)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~-----~~~-~GlDi~~~ 412 (618)
.-++||++++++-+..+++.+.+ ...+..+++.....+ ..........+|||+|+ .+. ..+++.++
T Consensus 80 ~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l 156 (218)
T d2g9na1 80 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 156 (218)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCS---TTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhH---HHHHHhcCCCEEEEeCChhHHHHHhcCCcccccc
Confidence 45799999999999998887754 233444444322211 11223345678999996 233 34778888
Q ss_pred cEEEEcCCC
Q 007085 413 DLIIHYELP 421 (618)
Q Consensus 413 ~~VI~~~~p 421 (618)
.++|...+.
T Consensus 157 ~~lVlDEaD 165 (218)
T d2g9na1 157 KMFVLDEAD 165 (218)
T ss_dssp CEEEEESHH
T ss_pred eEEEeeecc
Confidence 988865443
No 188
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=47.42 E-value=5.6 Score=37.33 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=21.3
Q ss_pred HHHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
..++.++.+.+ ++..++||||||.+.
T Consensus 115 plv~~vl~G~n~ti~aYGqtGSGKT~Tm 142 (368)
T d2ncda_ 115 PLIQSALDGYNICIFAYGQTGSGKTYTM 142 (368)
T ss_dssp HHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcccceeEEeeccCCCccceEe
Confidence 46677888876 788999999999874
No 189
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=47.21 E-value=5.4 Score=37.39 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=20.3
Q ss_pred HHHHHhCCCC--EEEEccCCChhHHHH
Q 007085 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (618)
.++.++.|.+ ++..++||||||.+.
T Consensus 66 lv~~~l~G~n~~i~aYGqTGSGKTyTm 92 (364)
T d1sdma_ 66 LVQSAVDGYNVCIFAYGQTGSGKTFTI 92 (364)
T ss_dssp HHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCceeeeccccCCCCccccc
Confidence 4677778876 677899999999875
No 190
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=46.93 E-value=21 Score=32.21 Aligned_cols=60 Identities=8% Similarity=0.094 Sum_probs=37.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEc-------CC--ch---HHHH----HHhhcCCCEEEEChHHHHH
Q 007085 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG-------GT--PI---SHQM----RALDYGVDAVVGTPGRVID 234 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~-------~~--~~---~~~~----~~~~~~~~Ilv~T~~~l~~ 234 (618)
..+|||||+...|.+++++++.+.+. .+..+-. .. .. ..+. ........|||+|...|+.
T Consensus 15 ~p~lvv~~~~~~A~~l~~~L~~~~~~-~v~~fP~~e~lpyd~~s~~~~i~~~R~~~L~~l~~~~~~iiits~~al~~ 90 (308)
T d2b2na1 15 GPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 90 (308)
T ss_dssp SCEEEEESSHHHHHHHHHHHHTTCSS-CEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHTB
T ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCC-ceEEcCCcccCccccCCCChHHHHHHHHHHHHHhhcCCceEEeechhhhh
Confidence 45899999999999999999876542 3222111 00 01 1121 2233457899999888764
No 191
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=46.48 E-value=30 Score=29.57 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh---c-
Q 007085 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y- 220 (618)
Q Consensus 145 tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 220 (618)
.-|+|.. +++-++..+.. .+.++||.|.......-+...+.+.+ ...+..++|+.+...+...+. .
T Consensus 66 ~~S~K~~-~l~~~l~~~~~--------~g~kviIFs~~~~~~~~l~~~l~~~~-~~~~~~i~G~~~~~~R~~~i~~F~~~ 135 (244)
T d1z5za1 66 RRSGKMI-RTMEIIEEALD--------EGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNN 135 (244)
T ss_dssp TTCHHHH-HHHHHHHHHHH--------TTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHC
T ss_pred hhhhHHH-HHHHHHHhhcc--------cccceEEEeeceehHHHHHHHHHhhc-cceEEEEecccchhccchhhhhhhcc
Confidence 4578875 34455544332 25679999998877766666565443 355667788888766554443 2
Q ss_pred -CCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 221 -GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 221 -~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
.+.++++|+.. ....+++.....+|+=+
T Consensus 136 ~~~~vll~~~~~-----~g~Glnl~~a~~vi~~~ 164 (244)
T d1z5za1 136 PSVKFIVLSVKA-----GGFGINLTSANRVIHFD 164 (244)
T ss_dssp TTCCEEEEECCT-----TCCCCCCTTCSEEEECS
T ss_pred ccchhccccccc-----cccccccchhhhhhhcC
Confidence 36777777532 12345566666666433
No 192
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=46.18 E-value=7.6 Score=36.27 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=17.6
Q ss_pred CCEEEEccCCChhHHHHHHHHHHHH
Q 007085 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+.+++.+|+|+|||..+ .+++..+
T Consensus 155 ~~~~~~g~~~~gk~~~~-~~~~~~~ 178 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLA-AALLELC 178 (362)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHc
Confidence 46999999999999754 4444443
No 193
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.66 E-value=4.7 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=13.4
Q ss_pred CCEEEEccCCChhHH
Q 007085 137 RDMIGRARTGTGKTL 151 (618)
Q Consensus 137 ~~~li~~~tGsGKT~ 151 (618)
+-++|++|+|+|||.
T Consensus 2 rpIvl~GpsG~GK~t 16 (186)
T d1gkya_ 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 358999999999997
No 194
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=44.82 E-value=4.4 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.5
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
++|.++.|+|||+++
T Consensus 4 ivi~G~~GsGKTT~~ 18 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999754
No 195
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=43.64 E-value=4.7 Score=33.45 Aligned_cols=15 Identities=20% Similarity=0.031 Sum_probs=12.3
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+-|.|++|||||+.+
T Consensus 25 IgI~G~~GSGKSTla 39 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLA 39 (198)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 448999999999744
No 196
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.34 E-value=4.9 Score=33.58 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=13.2
Q ss_pred CEEEEccCCChhHHH
Q 007085 138 DMIGRARTGTGKTLA 152 (618)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (618)
-++|.+|+|+|||..
T Consensus 2 pIvl~GPsGsGK~tl 16 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTL 16 (190)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999984
No 197
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=42.09 E-value=5.6 Score=32.84 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.1
Q ss_pred CCCEEEEccCCChhHHH
Q 007085 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (618)
|+=+++.+|.|+|||..
T Consensus 2 G~iivl~GpsG~GK~tl 18 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTV 18 (182)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999983
No 198
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=41.57 E-value=62 Score=23.92 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=49.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
|++|||=....++..+.+.++... +.+. .+.+.+..+..+.. ..+++||+|-
T Consensus 2 PkILiVDD~~~~~~~l~~~L~~~g--~~v~---------------------~a~~~~eal~~~~~-----~~~dlvl~D~ 53 (121)
T d1ys7a2 2 PRVLVVDDDSDVLASLERGLRLSG--FEVA---------------------TAVDGAEALRSATE-----NRPDAIVLDI 53 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT--CEEE---------------------EESSHHHHHHHHHH-----SCCSEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHHCC--CEEE---------------------EECCHHHHHHHHHh-----CCCCEEEEEe
Confidence 578888888777777777776542 2222 12344444455543 3467888883
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCch
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~ 288 (618)
.|.+.+-.+.+.. ++...+..++|++|+.-..
T Consensus 54 --~mP~~~G~el~~~-ir~~~~~~piI~lt~~~~~ 85 (121)
T d1ys7a2 54 --NMPVLDGVSVVTA-LRAMDNDVPVCVLSARSSV 85 (121)
T ss_dssp --SCSSSCHHHHHHH-HHHTTCCCCEEEEECCCTT
T ss_pred --eccCcccHHHHHH-HHhcCCCCEEEEEEeeCCH
Confidence 3444433344444 4455678899999987443
No 199
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.08 E-value=11 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=20.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcC
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~P 181 (618)
.||.+.-|||||. + +.++++. ..+.++.||+.
T Consensus 6 ~iitGFLGaGKTT-l----l~~lL~~------~~~~riaVI~N 37 (222)
T d1nija1 6 TLLTGFLGAGKTT-L----LRHILNE------QHGYKIAVIEN 37 (222)
T ss_dssp EEEEESSSSSCHH-H----HHHHHHS------CCCCCEEEECS
T ss_pred EEEeeCCCCCHHH-H----HHHHHhc------CCCCcEEEEEe
Confidence 6889999999997 3 3444441 12446666664
No 200
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=40.63 E-value=6.5 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.9
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++.+|||+|||..+
T Consensus 54 ~~lf~Gp~GvGKT~la 69 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVT 69 (315)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCcchhHHHH
Confidence 4889999999999855
No 201
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=40.41 E-value=5.2 Score=36.66 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=12.3
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+|+.+|+|+|||+.+
T Consensus 126 ~l~~G~pG~GKT~la 140 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLV 140 (321)
T ss_dssp EEEECSSSSCHHHHH
T ss_pred EEEECCCCccHHHHH
Confidence 555899999999854
No 202
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.54 E-value=1.1e+02 Score=26.40 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.2
Q ss_pred HHHHHH---hCCCCEEEEccCCChhHHHH
Q 007085 128 AVLEPA---MQGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i---~~~~~~li~~~tGsGKT~~~ 153 (618)
++|+.+ -+++.+.|.++.|+|||...
T Consensus 57 raID~l~pigkGQr~~If~~~g~GKt~l~ 85 (276)
T d2jdid3 57 KVVDLLAPYAKGGKIGLFGGAGVGKTVLI 85 (276)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred eeeeeeccccCCCEEEeeCCCCCCHHHHH
Confidence 455544 46889999999999999743
No 203
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Probab=39.53 E-value=10 Score=33.93 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.4
Q ss_pred HHHHHHh---CCCCEEEEccCCChhHHHH
Q 007085 128 AVLEPAM---QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 128 ~~i~~i~---~~~~~li~~~tGsGKT~~~ 153 (618)
++|+.+. +|+.++|.++.|+|||...
T Consensus 32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~ 60 (289)
T d1xpua3 32 RVLDLASPIGRGQRGLIVAPPKAGKTMLL 60 (289)
T ss_dssp HHHHHHSCCBTTCEEEEEECSSSSHHHHH
T ss_pred eeeeecccccCCCeeeEeCCCCCCHHHHH
Confidence 6777654 6899999999999999754
No 204
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=39.14 E-value=13 Score=32.88 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=23.5
Q ss_pred CEEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEc
Q 007085 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~ 180 (618)
-+++.+.=|.|||+++...+.....+ +.++|+|-
T Consensus 10 ~i~~sGKGGVGKTTvaa~lA~~lA~~---------G~rVLlvD 43 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCATAIRLAEQ---------GKRVLLVS 43 (296)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EEEEECCCcChHHHHHHHHHHHHHHC---------CCCEEEEe
Confidence 37889999999999776544433222 56777775
No 205
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=39.11 E-value=8.1 Score=32.79 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=12.9
Q ss_pred EEEEccCCChhHHHHH
Q 007085 139 MIGRARTGTGKTLAFG 154 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l 154 (618)
+.|-+|.|||||+++-
T Consensus 6 IaIdGp~GsGKgT~ak 21 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAK 21 (223)
T ss_dssp EEEECSSCSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4566999999999663
No 206
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=39.03 E-value=7.7 Score=32.82 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.6
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+.|.+|+|||||+++
T Consensus 6 I~I~GppGSGKgT~a 20 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLC 20 (225)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556699999999866
No 207
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=38.96 E-value=14 Score=32.56 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=16.0
Q ss_pred EEEEccCCChhHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILD 159 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~ 159 (618)
+++++.=|.|||+++...+..
T Consensus 23 ii~sGKGGVGKTT~a~nLA~~ 43 (279)
T d1ihua2 23 IMLMGKGGVGKTTMAAAIAVR 43 (279)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 677899999999877554443
No 208
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.81 E-value=6.3 Score=33.40 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=12.1
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+-|.|++|||||+.+
T Consensus 5 IgI~G~~gSGKSTla 19 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVC 19 (213)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 347899999999744
No 209
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=37.73 E-value=7.8 Score=31.91 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.2
Q ss_pred CCCCEEEEccCCChhHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l 154 (618)
.++-+++.++.|+|||..++
T Consensus 14 ~g~gvli~G~sG~GKS~lal 33 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECAL 33 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 35669999999999997653
No 210
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=37.22 E-value=6.7 Score=34.55 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.0
Q ss_pred HhCCCCEEEEccCCChhHH
Q 007085 133 AMQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (618)
+..+..+.|.+|+|||||+
T Consensus 38 i~~Ge~iaivG~sGsGKST 56 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKST 56 (253)
T ss_dssp ECTTCEEEEEECTTSSHHH
T ss_pred EcCCCEEEEECCCCChHHH
Confidence 3456779999999999997
No 211
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}
Probab=37.17 E-value=19 Score=26.44 Aligned_cols=48 Identities=10% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-C-CeeeecCcCCH
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-Y-NCEPLHGDISQ 379 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~-~~~~lhg~~~~ 379 (618)
..+...+....+..+++|+|.+-..+..++..|.+. + ++..+.|++..
T Consensus 46 ~~l~~~~~~~~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~~ 95 (108)
T d1gmxa_ 46 DTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred hhHHHHhhhccccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHHH
Confidence 445566666677889999999988888899888653 5 57788888643
No 212
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Probab=37.09 E-value=36 Score=27.81 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=45.4
Q ss_pred hCCCCEEEEcc-CCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 134 MQGRDMIGRAR-TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 134 ~~~~~~li~~~-tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
++++.+||.+. -|.|+-++.. +.+ .+.+++++.-+.+-+++..+++.+... ..+..+. ....
T Consensus 21 l~gK~vlItGasgGIG~~ia~~------la~--------~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~d--~~~~ 83 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAAL------LAG--------EGAEVVLCGRKLDKAQAAADSVNKRFK-VNVTAAE--TADD 83 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHH------HHH--------TTCEEEEEESSHHHHHHHHHHHHHHHT-CCCEEEE--CCSH
T ss_pred CCCCEEEEECCCHHHHHHHHHH------HHh--------hccchhhcccchHHHHHHHHHHHhccc-hhhhhhh--cccH
Confidence 46788999885 4556665332 222 167888888888888888887776432 2222222 1222
Q ss_pred HHHHHhhcCCCEEEEC
Q 007085 213 HQMRALDYGVDAVVGT 228 (618)
Q Consensus 213 ~~~~~~~~~~~Ilv~T 228 (618)
......-...||||.+
T Consensus 84 ~~~~~~~~~iDilin~ 99 (191)
T d1luaa1 84 ASRAEAVKGAHFVFTA 99 (191)
T ss_dssp HHHHHHTTTCSEEEEC
T ss_pred HHHHHHhcCcCeeeec
Confidence 2333334567888876
No 213
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=36.90 E-value=1.2e+02 Score=28.16 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=62.3
Q ss_pred ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhcCC---eeee----------------------cCcCCH
Q 007085 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN---CEPL----------------------HGDISQ 379 (618)
Q Consensus 325 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~---~~~l----------------------hg~~~~ 379 (618)
.....|.-++..++++. +.++||.|++...|..+++.|..-++ +..+ ......
T Consensus 39 ltGS~ka~~iA~l~~~~--~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (413)
T d1t5la1 39 ATGTGKTFTISNVIAQV--NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKIND 116 (413)
T ss_dssp CTTSCHHHHHHHHHHHH--TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCGGGTCCCSEEETTTTEEECCCSCCCH
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeeccchhhcccccccCchhhhhhhhhhhHHH
Confidence 44455666777777764 45899999999999999999965321 1110 011111
Q ss_pred H--HHHH-HHHHHhcCCccEEEEcCccccCCCCCC----ccEEEEcCCCCChhHHHHHhccCC
Q 007085 380 S--QRER-TLSAFRDGRFNILIATDVAARGLDVPN----VDLIIHYELPNTSETFVHRTGRTG 435 (618)
Q Consensus 380 ~--~r~~-i~~~f~~g~~~vLVaT~~~~~GlDi~~----~~~VI~~~~p~~~~~~~Qr~GR~g 435 (618)
. .+.. ..........-|+|++..+-.++-.|. ....+..+...+..++.++.-..|
T Consensus 117 ~~~~~~~~~~~~l~~~~~vIVv~~~a~~~~l~~p~~~~~~~l~l~~G~~i~~~~l~~~L~~~G 179 (413)
T d1t5la1 117 EIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQ 179 (413)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEECGGGGSCCCCHHHHHHTSEEEETTCSCCHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhccccCCceeeeecccccccCChHHhhheeEEEecCchhhHHHHHHHHHHhc
Confidence 1 1222 222333344444555555666664443 235666777778888776654333
No 214
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.86 E-value=7 Score=32.76 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=13.1
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+++++.+|||||+.+
T Consensus 5 i~l~GlpgsGKSTla 19 (213)
T d1bifa1 5 IVMVGLPARGKTYIS 19 (213)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999855
No 215
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=36.67 E-value=17 Score=30.46 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHhCC----CCEEEEccCCChhHHHHHHHHHHH
Q 007085 108 QDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDK 160 (618)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~l~~~l~~ 160 (618)
..+.+.|+..++. +-+. ..++..++++ .-+++.+|..+|||+.+ ..++..
T Consensus 23 ~~I~~~l~~q~i~-~~~F-l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~-~sl~~~ 76 (205)
T d1tuea_ 23 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 76 (205)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHhcCcc-HHHH-HHHHHHHHcCCCCceEEEEECCCCccHHHHH-HHHHHH
Confidence 5677777777666 2222 2344444443 33788999999999743 344443
No 216
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.66 E-value=7.5 Score=34.17 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.6
Q ss_pred hCCCCEEEEccCCChhHH
Q 007085 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (618)
..+.-+.|.+|+|||||+
T Consensus 38 ~~Ge~vaivG~sGsGKST 55 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKST 55 (251)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 456779999999999997
No 217
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=36.55 E-value=77 Score=28.64 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhh---cC
Q 007085 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---YG 221 (618)
Q Consensus 145 tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 221 (618)
--|||.. .+.-++..+.. ..+.++||++.......-+.+.+... ++.+..+.|..+...+...++ ..
T Consensus 98 ~~S~Kl~-~L~~ll~~~~~-------~~g~KvlIFs~~~~~ld~l~~~l~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~ 167 (346)
T d1z3ix1 98 QLSGKML-VLDYILAMTRT-------TTSDKVVLVSNYTQTLDLFEKLCRNR--RYLYVRLDGTMSIKKRAKIVERFNNP 167 (346)
T ss_dssp GGSHHHH-HHHHHHHHHHH-------HCCCEEEEEESCHHHHHHHHHHHHHH--TCCEEEECSSCCHHHHHHHHHHHHST
T ss_pred ccCHHHH-HHHHHHHHHHH-------hcCCceeEEeehhhhhHHHHHHHhhh--hccccccccchhHHHHHHHHHhhhcc
Confidence 4488975 44455544432 12568999999988877666666665 467778888888766544433 22
Q ss_pred ---CCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 222 ---VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 222 ---~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
..|++.++. .-...+++...+.||+=+.
T Consensus 168 ~~~~~vlLls~~-----agg~GlnL~~a~~vi~~d~ 198 (346)
T d1z3ix1 168 SSPEFIFMLSSK-----AGGCGLNLIGANRLVMFDP 198 (346)
T ss_dssp TCCCCEEEEEGG-----GSCTTCCCTTEEEEEECSC
T ss_pred cccceeeeecch-----hhhhccccccceEEEEecC
Confidence 335555422 1223456777777775443
No 218
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.42 E-value=47 Score=25.01 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=32.3
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHH
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
-..+++|++|=. |.+.+-.+.++.+.+......++|++|+...+......
T Consensus 49 ~~~~dlillD~~--mP~~dG~el~~~ir~~~~~~~piI~lT~~~~~~~~~~~ 98 (128)
T d2r25b1 49 GENYNMIFMDVQ--MPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKEC 98 (128)
T ss_dssp TCCCSEEEECSC--CSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHH
T ss_pred cCCCCEEEEEeC--CCCCCHHHHHHHHHHccCCCCeEEEEECCCCHHHHHHH
Confidence 456788998833 44444445555555566667789999998766544433
No 219
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=36.11 E-value=7.5 Score=39.98 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=34.9
Q ss_pred cCCCC-CHHHHHHHHHcCCCC--Ch--HHHHHHHHHHh---CCCCEEEEccCCChhHHHHHHHHHHHHH
Q 007085 102 SKLDI-SQDIVAALARRGISK--LF--PIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 102 ~~~~l-~~~l~~~l~~~~~~~--l~--~~Q~~~i~~i~---~~~~~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
..+++ +++.++..+...... |. .+=..|+..+. .++.+|+.++.|+|||.+.- -++.++.
T Consensus 83 k~l~iy~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k-~il~yL~ 150 (712)
T d1d0xa2 83 KRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK-KVIQYLA 150 (712)
T ss_dssp SCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 34443 566666665443322 32 23345555554 34569999999999998653 3444443
No 220
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=35.50 E-value=78 Score=28.28 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=16.2
Q ss_pred EEEEccCCChhHHHHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
+=|.+++|+|||. ++-.++..+.
T Consensus 54 igitG~pGaGKST-li~~l~~~~~ 76 (323)
T d2qm8a1 54 VGITGVPGVGKST-TIDALGSLLT 76 (323)
T ss_dssp EEEECCTTSCHHH-HHHHHHHHHH
T ss_pred EeeeCCCCCCHHH-HHHHHHHHHh
Confidence 6779999999996 4444444443
No 221
>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}
Probab=35.47 E-value=97 Score=26.42 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=49.5
Q ss_pred hCCCCEEEEccC-CChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchH
Q 007085 134 MQGRDMIGRART-GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (618)
Q Consensus 134 ~~~~~~li~~~t-GsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 212 (618)
+++|.+||.+.+ |-|+.++- .+.+ .+.+++++.-+.+.+++..+++.+..+..++..+..+....
T Consensus 2 l~gK~alITGas~GIG~aia~------~la~--------~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAV------RLAA--------EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDE 67 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH--------TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHH------HHHH--------CCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCH
Confidence 356777776654 45555422 2222 26788888878888888888888877666666665554433
Q ss_pred HHHHHh-------hcCCCEEEEC
Q 007085 213 HQMRAL-------DYGVDAVVGT 228 (618)
Q Consensus 213 ~~~~~~-------~~~~~Ilv~T 228 (618)
...+.+ ....||||.+
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnn 90 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNN 90 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEC
Confidence 332221 1357888876
No 222
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=35.38 E-value=10 Score=34.82 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.3
Q ss_pred CCCC--EEEEccCCChhHHHH
Q 007085 135 QGRD--MIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~--~li~~~tGsGKT~~~ 153 (618)
.+.+ ++..+.||||||.+.
T Consensus 82 ~G~n~~i~aYGqTGSGKTyTm 102 (330)
T d1ry6a_ 82 NGCVCSCFAYGQTGSGKTYTM 102 (330)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred cCCCeEEEeeeccccccceee
Confidence 4665 677899999999875
No 223
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=35.34 E-value=86 Score=23.75 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=29.0
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchH
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~ 289 (618)
..+++||+| -.|.+++-...+..+.. ..++.++|++|+.-...
T Consensus 43 ~~~dlil~D--~~mP~~~G~el~~~lr~-~~~~~pvI~lT~~~~~~ 85 (140)
T d1qkka_ 43 DFAGIVISD--IRMPGMDGLALFRKILA-LDPDLPMILVTGHGDIP 85 (140)
T ss_dssp TCCSEEEEE--SCCSSSCHHHHHHHHHH-HCTTSCEEEEECGGGHH
T ss_pred cCcchHHHh--hccCCCCHHHHHHHHHH-hCCCCcEEEEECCCCHH
Confidence 467889988 34666654455555544 45688999999986554
No 224
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=35.17 E-value=14 Score=27.72 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHhc-C-CeeeecCcCC
Q 007085 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-Y-NCEPLHGDIS 378 (618)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~-~~~~lhg~~~ 378 (618)
..+..+.....+..+++|+|.+-..+...+..|.+. + ++..+.|++.
T Consensus 60 ~~~~~~~~~~~~~~~iv~~C~~G~rs~~a~~~L~~~G~~nv~~l~GG~~ 108 (119)
T d1tq1a_ 60 DFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 108 (119)
T ss_dssp THHHHHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHHHHHHhcCCCcEEEEEcCCcCcHHHHHHHHHhcccCCeEEecChHH
Confidence 334444444456789999999988888888888654 5 6888889864
No 225
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=35.02 E-value=8.6 Score=32.54 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.2
Q ss_pred CCCEEEEccCCChhHHH
Q 007085 136 GRDMIGRARTGTGKTLA 152 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~ 152 (618)
|+-++|++|.|+|||..
T Consensus 2 G~livi~GPSG~GK~tl 18 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSL 18 (205)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45588999999999973
No 226
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=34.53 E-value=9.7 Score=31.29 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.2
Q ss_pred CCCCEEEEccCCChhHHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~l 154 (618)
.++-+++.++.|+|||..++
T Consensus 13 ~g~gvl~~G~sG~GKStlal 32 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETAL 32 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHH
Confidence 34568999999999998553
No 227
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}
Probab=34.47 E-value=16 Score=29.96 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.1
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
++++++|.+.=|++|++++
T Consensus 17 ~~k~vlIlGaGGaarai~~ 35 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGA 35 (182)
T ss_dssp TTCEEEEECCSHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHH
Confidence 5678999999888887644
No 228
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=34.40 E-value=7.4 Score=39.84 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=30.9
Q ss_pred CHHHHHHHHHcCCC----CChHHHHHHHHHHhC---CCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 107 SQDIVAALARRGIS----KLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 107 ~~~l~~~l~~~~~~----~l~~~Q~~~i~~i~~---~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+++.++..+..... ++..+=..|+..+.. ++.+|+.+++|+|||.++ --++.++
T Consensus 50 ~~~~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~-k~il~yL 110 (684)
T d1lkxa_ 50 KESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS-KKIMQFL 110 (684)
T ss_dssp SHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHH-HHHHHHH
Confidence 45555554333222 223333455555543 356999999999999866 3344444
No 229
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=34.10 E-value=83 Score=23.18 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=53.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
.+++|||=....+...+...+.+.. +.+.. +.+.+..+..+.. ..+++||+|
T Consensus 3 k~~ILIVDDd~~~~~~l~~~L~~~g--~~v~~---------------------a~~~~~a~~~l~~-----~~~dlii~D 54 (123)
T d1krwa_ 3 RGIVWVVDDDSSIRWVLERALAGAG--LTCTT---------------------FENGNEVLAALAS-----KTPDVLLSD 54 (123)
T ss_dssp CCEEEEESSSHHHHHHHHHHHHHTT--CEEEE---------------------ESSSHHHHHHHTT-----CCCSEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCC--CEEEE---------------------eCCHHHHHHHHHh-----CCCCEEEeh
Confidence 3567777777777777666666542 22222 2233333444432 467889999
Q ss_pred cchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHH
Q 007085 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~ 292 (618)
..+.+..-.+.+..+.+. .+..++|++|+.-......
T Consensus 55 --~~mp~~~G~el~~~l~~~-~~~~piI~~t~~~~~~~~~ 91 (123)
T d1krwa_ 55 --IRMPGMDGLALLKQIKQR-HPMLPVIIMTAHSDLDAAV 91 (123)
T ss_dssp --CSSSSSTTHHHHHHHHHH-SSSCCEEESCCCSCHHHHH
T ss_pred --hhcCCchHHHHHHHHHHh-CCCCeEEEEecCCCHHHHH
Confidence 335555445555555554 4678899999987765443
No 230
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=33.64 E-value=1e+02 Score=24.93 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=54.0
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhc-CCeeeecCcCCHHHHHHHHHHHhcCCccEEEEcCcc------ccCCCCCCccE
Q 007085 342 AKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA------ARGLDVPNVDL 414 (618)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~i~~~f~~g~~~vLVaT~~~------~~GlDi~~~~~ 414 (618)
....++++.++++.-+...++.|... .............+..........+...+++.|... ........+..
T Consensus 63 ~~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~ 142 (206)
T d1oywa2 63 LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVL 142 (206)
T ss_dssp HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEE
T ss_pred hccCceEEeccchhhhhhHHHHHHhhcccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeee
Confidence 35678999999999999999988664 455555666666777777777888889999988521 11223445666
Q ss_pred EEEc
Q 007085 415 IIHY 418 (618)
Q Consensus 415 VI~~ 418 (618)
+|..
T Consensus 143 lviD 146 (206)
T d1oywa2 143 LAVD 146 (206)
T ss_dssp EEES
T ss_pred eeee
Confidence 6653
No 231
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=33.59 E-value=10 Score=30.91 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCCCEEEEccCCChhHHHH
Q 007085 135 QGRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (618)
.++-+++.++.|+|||..+
T Consensus 14 ~g~gvli~G~sg~GKS~la 32 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETA 32 (169)
T ss_dssp TTEEEEEEESTTSSHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHH
Confidence 3466999999999999755
No 232
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.16 E-value=9 Score=31.48 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=13.6
Q ss_pred CCEEEEccCCChhHHH
Q 007085 137 RDMIGRARTGTGKTLA 152 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~ 152 (618)
+-++|.+|+|+|||..
T Consensus 4 k~ivl~Gpsg~GK~tl 19 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 3488999999999973
No 233
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.38 E-value=10 Score=33.79 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.5
Q ss_pred CCCCEEEEccCCChhHH
Q 007085 135 QGRDMIGRARTGTGKTL 151 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (618)
++.-+.|.+|+|||||.
T Consensus 61 ~Ge~vaivG~nGsGKST 77 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTS 77 (281)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCChHHH
Confidence 35668899999999997
No 234
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=32.15 E-value=9.5 Score=34.77 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.6
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
.+++++|||+|||..+
T Consensus 55 ~~lf~Gp~G~GKt~la 70 (315)
T d1qvra3 55 SFLFLGPTGVGKTELA 70 (315)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCcchHHHHH
Confidence 3688899999999855
No 235
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=32.01 E-value=9 Score=33.09 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.2
Q ss_pred hCCCCEEEEccCCChhHH
Q 007085 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (618)
.++.-+.|.+|.|||||+
T Consensus 29 ~~Ge~~~iiG~sGsGKST 46 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKST 46 (230)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCcch
Confidence 345678999999999997
No 236
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.98 E-value=23 Score=31.40 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.3
Q ss_pred EEEccCCChhHHHH
Q 007085 140 IGRARTGTGKTLAF 153 (618)
Q Consensus 140 li~~~tGsGKT~~~ 153 (618)
-|+|++|||||+.+
T Consensus 31 Gi~G~qGSGKSTl~ 44 (286)
T d1odfa_ 31 FFSGPQGSGKSFTS 44 (286)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EeECCCCCCHHHHH
Confidence 36899999999643
No 237
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=31.45 E-value=9.7 Score=39.64 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCCC-CHHHHHHHHHcCCCC--C--hHHHHHHHHHHhC---CCCEEEEccCCChhHHHHHHHHHHHHH
Q 007085 103 KLDI-SQDIVAALARRGISK--L--FPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 103 ~~~l-~~~l~~~l~~~~~~~--l--~~~Q~~~i~~i~~---~~~~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
.+++ +++.++..+...... | ..+=..|+..+.. ++.+||.++.|+|||.+.- -++.++.
T Consensus 80 ~l~iy~~~~~~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K-~il~yL~ 146 (789)
T d1kk8a2 80 RLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTK-KVIMYLA 146 (789)
T ss_dssp CCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHH
Confidence 4443 566666554333322 2 2333456655543 3569999999999998653 3344443
No 238
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=31.23 E-value=9.9 Score=31.49 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.5
Q ss_pred EEEEccCCChhHHH
Q 007085 139 MIGRARTGTGKTLA 152 (618)
Q Consensus 139 ~li~~~tGsGKT~~ 152 (618)
++|.|..|||||+.
T Consensus 12 I~ieG~~GsGKTTl 25 (197)
T d2vp4a1 12 VLIEGNIGSGKTTY 25 (197)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999983
No 239
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=30.87 E-value=8.5 Score=33.58 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HhCCCCEEEEccCCChhHHHHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFGIPI 157 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l~~~ 157 (618)
+..+.-+.|.+|+|||||+.+-+.+
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~ 49 (242)
T d1mv5a_ 25 AQPNSIIAFAGPSGGGKSTIFSLLE 49 (242)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH
No 240
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}
Probab=29.93 E-value=51 Score=28.63 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=33.6
Q ss_pred ccCCcchHHHHHHHHHhhcCCcEEEEecchhHHHHHHHHHHh
Q 007085 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK 366 (618)
Q Consensus 325 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~ 366 (618)
.+..+....+..+...+.+++++++||++.++++++.+.|.+
T Consensus 178 ~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~ 219 (266)
T d1o54a_ 178 LDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQE 219 (266)
T ss_dssp ECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHH
Confidence 344455667778877788899999999999999999888865
No 241
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.69 E-value=98 Score=22.66 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=53.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEc
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViD 252 (618)
.|++||+=....++..+...+.+.. +.+.. +.+.+..++.+.. .++++||+|
T Consensus 2 tp~ILiVDDd~~~~~~l~~~L~~~g--~~v~~---------------------a~~~~~al~~l~~-----~~~dlii~D 53 (121)
T d1xhfa1 2 TPHILIVEDELVTRNTLKSIFEAEG--YDVFE---------------------ATDGAEMHQILSE-----YDINLVIMD 53 (121)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTT--CEEEE---------------------ESSHHHHHHHHHH-----SCCSEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCC--CEEEE---------------------ECChHHHHHHHHh-----cCCCEEEee
Confidence 4688999898888888888777642 22221 2233444455543 357789988
Q ss_pred cchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHH
Q 007085 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (618)
Q Consensus 253 EaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~ 293 (618)
-.+.+..-.+.++. ++.. ++.++|++|+.-.......
T Consensus 54 --~~mp~~~G~~~~~~-~r~~-~~~pii~lt~~~~~~~~~~ 90 (121)
T d1xhfa1 54 --INLPGKNGLLLARE-LREQ-ANVALMFLTGRDNEVDKIL 90 (121)
T ss_dssp --SSCSSSCHHHHHHH-HHHH-CCCEEEEEESCCSHHHHHH
T ss_pred --cccCCccCcHHHHH-HHhc-CCCcEEEEECCCCHHHHHH
Confidence 23444433333333 3333 4788999999876654433
No 242
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=29.42 E-value=9.8 Score=39.10 Aligned_cols=54 Identities=15% Similarity=0.335 Sum_probs=31.5
Q ss_pred CHHHHHHHHHcCCC----CChHHHHHHHHHHhC---CCCEEEEccCCChhHHHHHHHHHHHH
Q 007085 107 SQDIVAALARRGIS----KLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKI 161 (618)
Q Consensus 107 ~~~l~~~l~~~~~~----~l~~~Q~~~i~~i~~---~~~~li~~~tGsGKT~~~l~~~l~~l 161 (618)
+++.++..+..... ++..+=..|+..+.. ++.+|+.++.|+|||.+. --++.++
T Consensus 55 ~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~-k~il~yL 115 (710)
T d1br2a2 55 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENT-KKVIQYL 115 (710)
T ss_dssp CHHHHHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHH
Confidence 45555544333222 233344566665553 356999999999999865 3344444
No 243
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=29.32 E-value=85 Score=24.43 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.4
Q ss_pred CCEEEEccCCChhHH
Q 007085 137 RDMIGRARTGTGKTL 151 (618)
Q Consensus 137 ~~~li~~~tGsGKT~ 151 (618)
+.++|.+|+|+|||.
T Consensus 1 ~ki~I~G~~G~GKST 15 (178)
T d1ye8a1 1 MKIIITGEPGVGKTT 15 (178)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred CEEEEECCCCcHHHH
Confidence 358999999999997
No 244
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=29.00 E-value=11 Score=32.84 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.0
Q ss_pred hCCCCEEEEccCCChhHH
Q 007085 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (618)
.++.-+.|.+|.|||||+
T Consensus 29 ~~Ge~~~iiG~sGsGKST 46 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKST 46 (240)
T ss_dssp CSSCEEEEEESTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 345668999999999997
No 245
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}
Probab=28.46 E-value=5.5 Score=33.09 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=11.2
Q ss_pred EEEEccCCChhHH
Q 007085 139 MIGRARTGTGKTL 151 (618)
Q Consensus 139 ~li~~~tGsGKT~ 151 (618)
.+|.|++|||||.
T Consensus 27 tvi~G~NGsGKSt 39 (222)
T d1qhla_ 27 TTLSGGNGAGKST 39 (222)
T ss_dssp HHHHSCCSHHHHH
T ss_pred EEEECCCCCCHHH
Confidence 4678999999997
No 246
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=28.35 E-value=12 Score=38.58 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=32.8
Q ss_pred CHHHHHHHHHcCC----CCChHHHHHHHHHHhC---CCCEEEEccCCChhHHHHHHHHHHHHH
Q 007085 107 SQDIVAALARRGI----SKLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKII 162 (618)
Q Consensus 107 ~~~l~~~l~~~~~----~~l~~~Q~~~i~~i~~---~~~~li~~~tGsGKT~~~l~~~l~~l~ 162 (618)
+++.++....... .++..+=..|+..+.. ++.+|+.++.|+|||.+.-. ++.++.
T Consensus 58 ~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~-il~~l~ 119 (730)
T d1w7ja2 58 GEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY-AMRYFA 119 (730)
T ss_dssp SHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHH-HHHHHH
Confidence 5666655543322 2233334566665543 45699999999999986543 444543
No 247
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=27.88 E-value=12 Score=30.80 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=11.7
Q ss_pred EEEccCCChhHHHH
Q 007085 140 IGRARTGTGKTLAF 153 (618)
Q Consensus 140 li~~~tGsGKT~~~ 153 (618)
-|.|..|||||+++
T Consensus 7 gitG~~gSGKstva 20 (191)
T d1uf9a_ 7 GITGNIGSGKSTVA 20 (191)
T ss_dssp EEEECTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 36799999999854
No 248
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.46 E-value=15 Score=31.60 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.5
Q ss_pred CCCCEEEEccCCChhHH
Q 007085 135 QGRDMIGRARTGTGKTL 151 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (618)
++.-+.+.+|.|||||+
T Consensus 25 ~Gei~~liGpsGsGKST 41 (232)
T d2awna2 25 EGEFVVFVGPSGCGKST 41 (232)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCChHHH
Confidence 45568899999999997
No 249
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=26.74 E-value=14 Score=31.70 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=14.6
Q ss_pred CCCCEEEEccCCChhHH
Q 007085 135 QGRDMIGRARTGTGKTL 151 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (618)
++.-+.+.+|.|||||+
T Consensus 25 ~Ge~~~liGpsGaGKST 41 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTL 41 (229)
T ss_dssp TTCEEEEECCCTHHHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45568999999999997
No 250
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.50 E-value=13 Score=32.27 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.6
Q ss_pred CCCCEEEEccCCChhHH
Q 007085 135 QGRDMIGRARTGTGKTL 151 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (618)
++.-+.+.+|.|||||+
T Consensus 31 ~Ge~~~liGpsGaGKST 47 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTT 47 (239)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCChHHH
Confidence 45568999999999997
No 251
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=26.26 E-value=16 Score=31.62 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=14.6
Q ss_pred CCCCEEEEccCCChhHH
Q 007085 135 QGRDMIGRARTGTGKTL 151 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (618)
++.-+-+.+|.|||||+
T Consensus 28 ~Ge~~~liG~sGaGKST 44 (240)
T d1g2912 28 DGEFMILLGPSGCGKTT 44 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCChHHH
Confidence 45668899999999997
No 252
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=25.88 E-value=13 Score=32.27 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCCCEEEEccCCChhHHH
Q 007085 135 QGRDMIGRARTGTGKTLA 152 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~~ 152 (618)
++.-+-+.+|.|+|||+.
T Consensus 31 ~Gei~~liGpnGaGKSTl 48 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999973
No 253
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=25.45 E-value=17 Score=31.85 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCcceEEEccchhccCCCcHHHHHHHHHHCCCC-CcEEEEEee
Q 007085 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSMMFSAT 285 (618)
Q Consensus 244 ~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~-~~~l~lSAT 285 (618)
.+..++++||...-++......+..++..+... .|+|+.|=.
T Consensus 224 ~~~~llllDEp~~~Ld~~~~~~l~~~l~~~~~~~~qviv~TH~ 266 (292)
T g1f2t.1 224 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 266 (292)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 456789999999877766666677777777543 577776443
No 254
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus [TaxId: 2261]}
Probab=25.38 E-value=14 Score=33.34 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=12.4
Q ss_pred EEEEccCCChhHHH
Q 007085 139 MIGRARTGTGKTLA 152 (618)
Q Consensus 139 ~li~~~tGsGKT~~ 152 (618)
.+|+|++|||||..
T Consensus 29 nvi~G~NGsGKS~i 42 (329)
T g1xew.1 29 TAIVGANGSGKSNI 42 (329)
T ss_dssp EEEEECTTSSSHHH
T ss_pred EEEECCCCCCHHHH
Confidence 58999999999973
No 255
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}
Probab=25.02 E-value=15 Score=30.88 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=12.4
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+-|+|..|||||+++
T Consensus 6 IgitG~igSGKStv~ 20 (208)
T d1vhta_ 6 VALTGGIGSGKSTVA 20 (208)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCcCCHHHHH
Confidence 347999999999855
No 256
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=24.99 E-value=26 Score=30.89 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=18.0
Q ss_pred HhCCCCEEEEccCCChhHHHHH
Q 007085 133 AMQGRDMIGRARTGTGKTLAFG 154 (618)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~l 154 (618)
+-+++.+.|.++.|+|||....
T Consensus 64 ig~GQr~~Ifg~~g~GKt~l~~ 85 (276)
T d1fx0a3 64 VGRGQRELIIGDRQTGKTAVAT 85 (276)
T ss_dssp CBTTCBCBEEESSSSSHHHHHH
T ss_pred ccCCceEeeccCCCCChHHHHH
Confidence 4467889999999999997443
No 257
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Probab=24.83 E-value=54 Score=28.53 Aligned_cols=41 Identities=22% Similarity=0.063 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHhCC----CC-EEEEccCCChhHH
Q 007085 109 DIVAALARRGISKLFPIQKAVLEPAMQG----RD-MIGRARTGTGKTL 151 (618)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~-~li~~~tGsGKT~ 151 (618)
.+.+.|+..++. +..+.. ++-.++.+ ++ +++.+|.++|||+
T Consensus 74 ~i~~~l~~q~~~-~~~f~~-~l~~~L~~~~~k~n~~~l~G~~~tGKS~ 119 (267)
T d1u0ja_ 74 RIYKILELNGYD-PQYAAS-VFLGWATKKFGKRNTIWLFGPATTGKTN 119 (267)
T ss_dssp HHHHHHHHTTCC-HHHHHH-HHHHHHTTCSTTCCEEEEECSTTSSHHH
T ss_pred HHHHHHHHcCcC-HHHHHH-HHHHHHcCCCCccEEEEEEcCCCCCHHH
Confidence 466777766665 555665 44444432 34 6888999999997
No 258
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=24.68 E-value=28 Score=30.19 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=16.0
Q ss_pred EEEEccCCChhHHHHHHHHHHH
Q 007085 139 MIGRARTGTGKTLAFGIPILDK 160 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~ 160 (618)
+.|.+.=|.|||.+++..+...
T Consensus 4 Iai~gKGGvGKTT~a~nLA~~L 25 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 4567889999999876554443
No 259
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=24.20 E-value=30 Score=31.07 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=12.6
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
+-|+|+.|||||+.+
T Consensus 83 IGIaG~sgSGKSTla 97 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEeCCCCCCCcHHH
Confidence 568999999999844
No 260
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=23.96 E-value=16 Score=30.55 Aligned_cols=14 Identities=29% Similarity=0.140 Sum_probs=11.8
Q ss_pred EEEccCCChhHHHH
Q 007085 140 IGRARTGTGKTLAF 153 (618)
Q Consensus 140 li~~~tGsGKT~~~ 153 (618)
-|+|..|||||+++
T Consensus 6 gITG~igSGKStv~ 19 (205)
T d1jjva_ 6 GLTGGIGSGKTTIA 19 (205)
T ss_dssp EEECSTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 46999999999854
No 261
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=23.82 E-value=35 Score=29.97 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=20.8
Q ss_pred EEEEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 139 ~li~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
+.|.+.=|.|||.++.-.+...... +.++|+|
T Consensus 5 IaisgKGGVGKTT~a~NLA~~LA~~---------G~rVLlI 36 (289)
T d2afhe1 5 CAIYGKGGIGKSTTTQNLVAALAEM---------GKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---------CCCEEEE
Confidence 5567889999999776544333222 5567766
No 262
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.69 E-value=13 Score=31.04 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=45.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHh----hcCCCEEEEChHHHHHHHHhcCCCCCCcce
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~ 248 (618)
+.++||.|.+...+..+.+.+ .+..+++..+..++...+ ...++|||+| + +....+++..+++
T Consensus 93 ~~k~lvf~~~~~~~~~l~~~l-------~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~-----~-~~~~Gidl~~~~~ 159 (200)
T d2fwra1 93 KDKIIIFTRHNELVYRISKVF-------LIPAITHRTSREEREEILEGFRTGRFRAIVSS-----Q-VLDEGIDVPDANV 159 (200)
T ss_dssp SSCBCCBCSCHHHHHHHHHHT-------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCS-----S-CCCSSSCSCCBSE
T ss_pred CCcEEEEeCcHHHHHHHHhhc-------CcceeeCCCCHHHHHHHHHHhhcCCeeeeeec-----c-hhhcccCCCCCCE
Confidence 457899999988777665544 233456776655443332 2357899988 2 2345677888998
Q ss_pred EEEccchh
Q 007085 249 VVLDEADQ 256 (618)
Q Consensus 249 vViDEaH~ 256 (618)
||+-+.+.
T Consensus 160 vi~~~~~~ 167 (200)
T d2fwra1 160 GVIMSGSG 167 (200)
T ss_dssp EEEECCSS
T ss_pred EEEeCCCC
Confidence 88766553
No 263
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.38 E-value=39 Score=28.06 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=12.8
Q ss_pred CEEEEccCCChhHHHH
Q 007085 138 DMIGRARTGTGKTLAF 153 (618)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (618)
=+++.++-|+|||+.+
T Consensus 5 lI~ieG~dGsGKsT~~ 20 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQS 20 (209)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667799999999854
No 264
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=23.13 E-value=14 Score=31.97 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.2
Q ss_pred hCCCCEEEEccCCChhHH
Q 007085 134 MQGRDMIGRARTGTGKTL 151 (618)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (618)
.++.-+.|.+|.|||||+
T Consensus 29 ~~Ge~~~iiG~sGsGKST 46 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTT 46 (242)
T ss_dssp CTTCEEEEECSCHHHHHH
T ss_pred CCCCEEEEECCCCCcHHH
Confidence 345668999999999997
No 265
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.01 E-value=17 Score=30.21 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=13.7
Q ss_pred CCEEEEccCCChhHH
Q 007085 137 RDMIGRARTGTGKTL 151 (618)
Q Consensus 137 ~~~li~~~tGsGKT~ 151 (618)
+++++.+++++|||.
T Consensus 1 k~V~ivG~~~~GKTs 15 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTL 15 (207)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 478999999999997
No 266
>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.83 E-value=2.2e+02 Score=24.50 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHhCCCCEEEEccC-CChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEEcCcHHHHHHHHHHHHHhCC---CCceEEEEc
Q 007085 132 PAMQGRDMIGRART-GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYG 207 (618)
Q Consensus 132 ~i~~~~~~li~~~t-GsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil~Pt~~La~q~~~~l~~~~~---~~~~~~~~~ 207 (618)
-.++++.+||.+.+ |-|+.+ ...+.+ .+.+++++.-+.+-.++..+++...++ ..++..+..
T Consensus 8 g~L~gKvalITGas~GIG~ai------a~~la~--------~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~ 73 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAI------VKELLE--------LGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQC 73 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHH------HHHHHH--------TTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHH------HHHHHH--------CCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEec
Confidence 45788888887654 344443 223322 267888888888888888888887543 234555555
Q ss_pred CCchHHHHHHh-------hcCCCEEEEC
Q 007085 208 GTPISHQMRAL-------DYGVDAVVGT 228 (618)
Q Consensus 208 ~~~~~~~~~~~-------~~~~~Ilv~T 228 (618)
+....+..+.+ ....+|||..
T Consensus 74 Dvs~~~~v~~~~~~~~~~~G~iDiLVnn 101 (297)
T d1yxma1 74 NIRNEEEVNNLVKSTLDTFGKINFLVNN 101 (297)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHhCCeEEEEee
Confidence 54433332221 1246777755
No 267
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=22.73 E-value=16 Score=31.97 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.6
Q ss_pred CCCCEEEEccCCChhHH
Q 007085 135 QGRDMIGRARTGTGKTL 151 (618)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (618)
++.-+-|.+|.|||||+
T Consensus 27 ~GEi~~iiG~sGsGKST 43 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKST 43 (258)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668899999999997
No 268
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=22.28 E-value=17 Score=30.61 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=14.0
Q ss_pred CCEEEEccCCChhHHHH
Q 007085 137 RDMIGRARTGTGKTLAF 153 (618)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (618)
.-+.+.+.+|||||..+
T Consensus 25 ~vIwltGlsGsGKTTia 41 (208)
T d1m7ga_ 25 LTIWLTGLSASGKSTLA 41 (208)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34888999999999744
No 269
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.94 E-value=38 Score=27.77 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.6
Q ss_pred EEEEccCCChhHHHH
Q 007085 139 MIGRARTGTGKTLAF 153 (618)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (618)
++|.|.-|||||+..
T Consensus 3 I~ieG~dGsGKST~~ 17 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLV 17 (208)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999843
No 270
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=21.74 E-value=1.4e+02 Score=21.63 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=49.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEE-EE-ChHHHHHHHHhcCCCCCCcceEEE
Q 007085 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV-VG-TPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 174 ~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il-v~-T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
.++||+=-.......+.+.+.++ ++ .++ ++ +....+..+.+ .++++||+
T Consensus 2 krILivDD~~~~~~~l~~~L~~~--g~----------------------~v~~~a~~~~~al~~~~~-----~~~dliil 52 (118)
T d1u0sy_ 2 KRVLIVDDAAFMRMMLKDIITKA--GY----------------------EVAGEATNGREAVEKYKE-----LKPDIVTM 52 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT--TC----------------------EEEEEESSHHHHHHHHHH-----HCCSEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHc--CC----------------------ceEEEECCHHHHHHHHHh-----ccCCEEEE
Confidence 46777777666666666666543 12 222 22 33344444443 24678999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHH
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~ 292 (618)
| . .|.+.+-.+.+.++. ...++.++|++|+.-......
T Consensus 53 D-~-~mp~~~G~e~~~~ir-~~~~~~pvi~ls~~~~~~~~~ 90 (118)
T d1u0sy_ 53 D-I-TMPEMNGIDAIKEIM-KIDPNAKIIVCSAMGQQAMVI 90 (118)
T ss_dssp E-C-SCGGGCHHHHHHHHH-HHCTTCCEEEEECTTCHHHHH
T ss_pred e-c-CCCCCCHHHHHHHHH-HhCCCCcEEEEEccCCHHHHH
Confidence 8 3 344444444444444 445678899999886654433
No 271
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.62 E-value=40 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.7
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHh-cCCeeeecCcCC
Q 007085 342 AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDIS 378 (618)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~lhg~~~ 378 (618)
.+..++++||.+-..+...+..|.+ ++.+..+.|++.
T Consensus 78 ~~~~~ivl~C~~G~rS~~aa~~L~~~G~~v~~l~GG~~ 115 (130)
T d1yt8a4 78 VRGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 115 (130)
T ss_dssp SBTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CccceEEeecCCCccHHHHHHHHHHcCCCeEEEcCchH
Confidence 3567899999998888888888865 488888888764
No 272
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=21.56 E-value=1.4e+02 Score=21.81 Aligned_cols=83 Identities=10% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEE-EChHHHHHHHHhcCCCCCCcceEEE
Q 007085 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVL 251 (618)
Q Consensus 173 ~~~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv-~T~~~l~~~l~~~~~~~~~~~~vVi 251 (618)
.|++||+=........+...+.+.. . .|.. .+.+..+..+. -..+++||+
T Consensus 2 kP~ILiVDDd~~~~~~l~~~L~~~g--~----------------------~v~~a~~~~~al~~~~-----~~~~dliil 52 (128)
T d1yioa2 2 KPTVFVVDDDMSVREGLRNLLRSAG--F----------------------EVETFDCASTFLEHRR-----PEQHGCLVL 52 (128)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTT--C----------------------EEEEESSHHHHHHHCC-----TTSCEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcC--C----------------------CccccccHHHHHHHHH-----hcCCCEeeh
Confidence 3577777777777766666666542 1 2222 22233333322 356888999
Q ss_pred ccchhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCc
Q 007085 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (618)
Q Consensus 252 DEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~ 287 (618)
|- .|.+.. +..+...+...++..+++++|+.-.
T Consensus 53 D~--~mp~~~-G~~~~~~i~~~~~~~~ii~lt~~~~ 85 (128)
T d1yioa2 53 DM--RMPGMS-GIELQEQLTAISDGIPIVFITAHGD 85 (128)
T ss_dssp ES--CCSSSC-HHHHHHHHHHTTCCCCEEEEESCTT
T ss_pred hh--hcccch-hHHHHHHHHhhCCCCeEEEEEEECC
Confidence 84 344443 3344444556677889999988743
No 273
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=21.56 E-value=1.4e+02 Score=21.56 Aligned_cols=88 Identities=9% Similarity=0.185 Sum_probs=50.6
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEEChHHHHHHHHhcCCCCCCcceEEEccc
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~~~~vViDEa 254 (618)
++||+=....++..+...+.+.. +.+. .+.+.+..+..+.. ..+++||+|=
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~g--~~v~---------------------~a~~~~eal~~~~~-----~~~dlillD~- 52 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKEG--YEVV---------------------TAFNGREALEQFEA-----EQPDIIILDL- 52 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT--CEEE---------------------EESSHHHHHHHHHH-----HCCSEEEECS-
T ss_pred EEEEEECCHHHHHHHHHHHHHCC--CEEE---------------------EECCHHHHHHHHHh-----cCCCEEEecc-
Confidence 57777777777777766666542 2221 22333444445543 3567899883
Q ss_pred hhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchHHHHHH
Q 007085 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (618)
Q Consensus 255 H~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~~~~~~ 294 (618)
.+.+..-...+..+ ... ++.++|++|+.-........
T Consensus 53 -~mp~~~G~~~~~~i-~~~-~~~pvI~lt~~~~~~~~~~a 89 (117)
T d2a9pa1 53 -MLPEIDGLEVAKTI-RKT-SSVPILMLSAKDSEFDKVIG 89 (117)
T ss_dssp -SCSSSCHHHHHHHH-HTT-CCCCEEEEESCCSHHHHHHH
T ss_pred -ccCCCCccHHHHHH-HhC-CCCCEEEEecCCCHHHHHHH
Confidence 35555434444444 443 46789999998776544433
No 274
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.55 E-value=36 Score=28.48 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=18.7
Q ss_pred EEccCCChhHHHHHHHHHHHHHHHhhhcCCCCCCeEEEE
Q 007085 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (618)
Q Consensus 141 i~~~tGsGKT~~~l~~~l~~l~~~~~~~~~~~~~~~lil 179 (618)
....-|.|||+++...+.... + .+.+++++
T Consensus 8 ~~~kGGvGKTtia~nLA~~la-~--------~g~~Vlli 37 (237)
T d1g3qa_ 8 VSGKGGTGKTTVTANLSVALG-D--------RGRKVLAV 37 (237)
T ss_dssp ECSSTTSSHHHHHHHHHHHHH-H--------TTCCEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHH-h--------CCCCEEEE
Confidence 347789999997755443332 2 14567777
No 275
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.22 E-value=25 Score=30.27 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=11.6
Q ss_pred EEEEccCCChhHH
Q 007085 139 MIGRARTGTGKTL 151 (618)
Q Consensus 139 ~li~~~tGsGKT~ 151 (618)
+.+.+|.|||||+
T Consensus 27 ~~liGpnGaGKST 39 (240)
T d2onka1 27 CVLLGPTGAGKSV 39 (240)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCChHHH
Confidence 5678999999997
No 276
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.09 E-value=1.4e+02 Score=21.61 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=48.4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhCCCCceEEEEcCCchHHHHHHhhcCCCEEEE-ChHHHHHHHHhcCCCCCCcceEEEcc
Q 007085 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG-TPGRVIDLIKRNALNLSEVQFVVLDE 253 (618)
Q Consensus 175 ~~lil~Pt~~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~-T~~~l~~~l~~~~~~~~~~~~vViDE 253 (618)
++|||=.....+..+.+.+.+.. +.+.++ +.+..+..+.. ..+++||+|
T Consensus 3 rILiVdDd~~~~~~l~~~L~~~g------------------------~~v~~a~~~~~al~~l~~-----~~~dlillD- 52 (122)
T d1kgsa2 3 RVLVVEDERDLADLITEALKKEM------------------------FTVDVCYDGEEGMYMALN-----EPFDVVILD- 52 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTT------------------------CEEEEESSHHHHHHHHHH-----SCCSEEEEE-
T ss_pred EEEEEeCCHHHHHHHHHHHHHCC------------------------CEEEEEcchHHHHHHHHh-----hCccccccc-
Confidence 57777777677666666666542 222222 33333444443 357789988
Q ss_pred chhccCCCcHHHHHHHHHHCCCCCcEEEEEeeCchH
Q 007085 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (618)
Q Consensus 254 aH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT~~~~ 289 (618)
..|.+..-...+.. ++..++..++|++|+.-...
T Consensus 53 -~~mp~~~g~~~~~~-lr~~~~~~piI~lt~~~~~~ 86 (122)
T d1kgsa2 53 -IMLPVHDGWEILKS-MRESGVNTPVLMLTALSDVE 86 (122)
T ss_dssp -SCCSSSCHHHHHHH-HHHTTCCCCEEEEESSCHHH
T ss_pred -cccccchhHHHHHH-HHhcCCCCcEEEEcCCCCHH
Confidence 33445543344444 45566788899999986553
No 277
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=20.70 E-value=21 Score=29.68 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.3
Q ss_pred CCCEEEEccCCChhHHHH
Q 007085 136 GRDMIGRARTGTGKTLAF 153 (618)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (618)
++=+++.++.|||||+.+
T Consensus 2 gkfIviEG~dGsGKsT~~ 19 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTAR 19 (210)
T ss_dssp CCEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 344788899999999854
No 278
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.52 E-value=35 Score=30.13 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=30.4
Q ss_pred CCCcceEEEccchhccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 007085 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (618)
Q Consensus 243 ~~~~~~vViDEaH~~~~~~~~~~~~~il~~l~~~~~~l~lSAT 285 (618)
...-.+++|||.+..+.......+..++....++.|+++.|-.
T Consensus 239 ~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHs 281 (308)
T d1e69a_ 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (308)
T ss_dssp TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred hccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECC
Confidence 4556789999998766554556666677666678898876443
Done!