Query 007087
Match_columns 618
No_of_seqs 50 out of 52
Neff 2.2
Searched_HMMs 46136
Date Thu Mar 28 18:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07058 Myosin_HC-like: Myosi 100.0 7E-154 1E-158 1144.7 33.7 341 229-573 1-351 (351)
2 PRK11637 AmiB activator; Provi 98.2 0.0012 2.6E-08 68.3 25.5 212 47-278 16-234 (428)
3 TIGR02168 SMC_prok_B chromosom 98.2 0.011 2.5E-07 64.9 34.1 47 343-389 993-1040(1179)
4 TIGR02168 SMC_prok_B chromosom 98.1 0.027 5.8E-07 62.1 36.3 26 74-99 671-696 (1179)
5 TIGR02169 SMC_prok_A chromosom 98.1 0.034 7.4E-07 61.8 35.8 23 289-311 898-920 (1164)
6 PRK02224 chromosome segregatio 97.9 0.061 1.3E-06 59.6 33.4 116 266-385 387-523 (880)
7 PF07888 CALCOCO1: Calcium bin 97.8 0.054 1.2E-06 59.9 30.8 94 180-283 210-303 (546)
8 TIGR02169 SMC_prok_A chromosom 97.8 0.11 2.4E-06 57.9 37.7 8 517-524 679-686 (1164)
9 PRK02224 chromosome segregatio 97.8 0.11 2.5E-06 57.6 33.2 58 71-128 347-404 (880)
10 PRK03918 chromosome segregatio 97.6 0.16 3.6E-06 56.0 35.1 21 345-365 461-481 (880)
11 TIGR00606 rad50 rad50. This fa 97.6 0.27 5.9E-06 58.1 35.6 147 108-254 744-907 (1311)
12 PHA02562 46 endonuclease subun 97.5 0.13 2.9E-06 53.8 26.7 24 289-312 381-404 (562)
13 COG1196 Smc Chromosome segrega 97.4 0.15 3.3E-06 59.5 28.7 111 230-345 392-513 (1163)
14 PRK11637 AmiB activator; Provi 97.3 0.27 6E-06 51.2 27.4 199 68-279 42-249 (428)
15 KOG0161 Myosin class II heavy 97.3 0.47 1E-05 59.0 32.5 285 68-363 1085-1399(1930)
16 KOG0161 Myosin class II heavy 97.2 1.1 2.3E-05 56.1 34.6 207 79-313 921-1144(1930)
17 COG1196 Smc Chromosome segrega 97.2 0.51 1.1E-05 55.3 30.3 44 345-388 979-1023(1163)
18 KOG0250 DNA repair protein RAD 97.2 0.14 3E-06 60.4 25.0 203 72-285 667-924 (1074)
19 PF15619 Lebercilin: Ciliary p 97.1 0.14 3E-06 49.7 21.0 67 73-146 12-78 (194)
20 PF12128 DUF3584: Protein of u 97.1 0.98 2.1E-05 53.3 35.4 127 229-359 772-911 (1201)
21 PF05701 WEMBL: Weak chloropla 96.8 1.1 2.4E-05 48.6 34.7 151 81-247 28-191 (522)
22 PF09726 Macoilin: Transmembra 96.8 0.33 7.1E-06 55.0 22.9 196 73-276 418-656 (697)
23 PRK09039 hypothetical protein; 96.6 0.47 1E-05 49.2 21.5 89 77-191 43-131 (343)
24 PF15619 Lebercilin: Ciliary p 96.6 0.082 1.8E-06 51.3 15.1 129 225-366 9-141 (194)
25 KOG0977 Nuclear envelope prote 96.6 0.82 1.8E-05 51.0 24.2 82 176-261 148-231 (546)
26 PRK04863 mukB cell division pr 96.6 2.9 6.3E-05 51.2 31.6 217 110-364 295-527 (1486)
27 KOG0963 Transcription factor/C 96.6 2 4.3E-05 48.8 32.4 315 57-397 85-444 (629)
28 KOG0994 Extracellular matrix g 96.5 2.2 4.7E-05 51.7 27.9 42 259-300 1587-1632(1758)
29 PF12128 DUF3584: Protein of u 96.5 2.7 5.9E-05 49.8 34.7 138 174-318 344-486 (1201)
30 PRK03918 chromosome segregatio 96.5 1.9 4.2E-05 47.9 35.7 26 289-314 454-479 (880)
31 KOG0250 DNA repair protein RAD 96.4 2.5 5.4E-05 50.4 27.6 67 78-144 659-725 (1074)
32 TIGR00606 rad50 rad50. This fa 96.2 4.2 9E-05 48.6 36.2 34 327-367 568-601 (1311)
33 PF05701 WEMBL: Weak chloropla 96.2 2.6 5.6E-05 46.0 24.5 207 70-288 278-488 (522)
34 PF00038 Filament: Intermediat 96.1 1.7 3.7E-05 42.9 25.3 33 181-213 167-200 (312)
35 PF10174 Cast: RIM-binding pro 96.0 4.1 8.9E-05 47.2 29.2 259 68-364 282-583 (775)
36 KOG4674 Uncharacterized conser 96.0 6.8 0.00015 49.2 31.2 69 70-138 1254-1337(1822)
37 PF10174 Cast: RIM-binding pro 96.0 4.5 9.7E-05 46.9 31.9 65 210-274 290-354 (775)
38 PF09726 Macoilin: Transmembra 96.0 1.7 3.7E-05 49.4 22.8 182 174-373 416-617 (697)
39 KOG0977 Nuclear envelope prote 95.9 0.52 1.1E-05 52.5 18.4 79 69-147 88-173 (546)
40 KOG4674 Uncharacterized conser 95.8 7.2 0.00016 49.0 28.5 232 69-318 76-315 (1822)
41 TIGR02680 conserved hypothetic 95.7 6.9 0.00015 47.4 30.7 45 101-145 735-779 (1353)
42 PRK04863 mukB cell division pr 95.6 8.7 0.00019 47.4 32.5 145 226-392 511-666 (1486)
43 COG1579 Zn-ribbon protein, pos 95.4 3.5 7.6E-05 41.9 21.4 139 70-225 14-152 (239)
44 KOG0995 Centromere-associated 95.4 6.1 0.00013 44.7 27.7 226 71-311 292-545 (581)
45 COG4942 Membrane-bound metallo 95.3 5.7 0.00012 43.4 26.6 101 71-184 43-143 (420)
46 TIGR02680 conserved hypothetic 95.1 11 0.00023 45.8 26.6 76 121-199 792-867 (1353)
47 KOG0996 Structural maintenance 95.1 11 0.00024 45.8 26.2 130 182-314 432-569 (1293)
48 PF05557 MAD: Mitotic checkpoi 94.9 0.0072 1.6E-07 66.7 0.0 98 176-274 171-268 (722)
49 PF00261 Tropomyosin: Tropomyo 94.8 4.3 9.4E-05 39.7 23.4 122 176-310 92-213 (237)
50 PHA02562 46 endonuclease subun 94.8 6.5 0.00014 41.5 27.1 15 370-384 427-441 (562)
51 PF10267 Tmemb_cc2: Predicted 94.5 8.4 0.00018 41.7 22.0 36 541-576 259-294 (395)
52 COG4942 Membrane-bound metallo 94.4 9.6 0.00021 41.7 27.2 66 87-153 38-110 (420)
53 PF05667 DUF812: Protein of un 93.9 2.9 6.4E-05 46.9 17.2 126 227-360 400-529 (594)
54 PF15290 Syntaphilin: Golgi-lo 93.9 0.7 1.5E-05 48.3 11.6 106 27-140 18-149 (305)
55 KOG0979 Structural maintenance 93.7 20 0.00044 43.1 25.0 122 76-202 162-302 (1072)
56 KOG4807 F-actin binding protei 93.4 16 0.00034 40.7 21.8 261 73-367 245-543 (593)
57 PF07888 CALCOCO1: Calcium bin 92.7 21 0.00045 40.4 34.8 42 78-119 141-182 (546)
58 PF00261 Tropomyosin: Tropomyo 92.5 11 0.00025 36.9 22.9 197 179-389 4-215 (237)
59 PF15254 CCDC14: Coiled-coil d 92.4 1.5 3.2E-05 51.0 12.3 191 80-270 291-543 (861)
60 KOG0018 Structural maintenance 92.2 34 0.00073 41.6 24.1 91 112-206 157-250 (1141)
61 PRK09039 hypothetical protein; 92.1 4.8 0.0001 42.0 14.6 58 74-132 47-105 (343)
62 TIGR01000 bacteriocin_acc bact 92.0 19 0.00041 38.2 19.2 37 287-323 291-327 (457)
63 COG0419 SbcC ATPase involved i 91.6 31 0.00066 39.9 32.1 25 335-359 568-595 (908)
64 PF00038 Filament: Intermediat 91.6 15 0.00033 36.3 25.2 47 341-387 221-271 (312)
65 TIGR01843 type_I_hlyD type I s 91.6 16 0.00035 36.6 20.1 30 289-318 248-277 (423)
66 PF06785 UPF0242: Uncharacteri 91.6 4.6 0.0001 43.6 14.0 111 182-316 62-177 (401)
67 PRK11281 hypothetical protein; 91.5 40 0.00086 40.9 30.8 221 60-282 67-332 (1113)
68 PF09789 DUF2353: Uncharacteri 91.3 22 0.00049 37.7 23.2 143 179-378 82-224 (319)
69 PRK01156 chromosome segregatio 90.7 35 0.00076 38.9 35.5 32 178-209 524-555 (895)
70 PF10473 CENP-F_leu_zip: Leuci 90.4 16 0.00035 34.6 17.0 96 181-276 8-107 (140)
71 KOG0933 Structural maintenance 90.1 34 0.00074 41.5 20.3 197 75-274 710-924 (1174)
72 PF12718 Tropomyosin_1: Tropom 89.8 17 0.00037 33.9 15.8 114 174-311 19-132 (143)
73 TIGR00634 recN DNA repair prot 89.5 37 0.00079 37.3 22.8 50 264-313 323-372 (563)
74 PF05557 MAD: Mitotic checkpoi 89.4 2.2 4.8E-05 47.7 10.0 85 231-315 506-627 (722)
75 PF15070 GOLGA2L5: Putative go 89.2 45 0.00099 38.0 32.7 139 181-319 85-269 (617)
76 PF09787 Golgin_A5: Golgin sub 89.1 38 0.00083 37.0 30.5 45 233-280 286-330 (511)
77 PF05911 DUF869: Plant protein 88.9 49 0.0011 38.8 20.2 156 182-356 23-203 (769)
78 TIGR03185 DNA_S_dndD DNA sulfu 88.6 45 0.00098 37.2 32.0 46 88-133 210-255 (650)
79 PRK10884 SH3 domain-containing 88.6 5.2 0.00011 39.5 10.8 73 170-255 87-159 (206)
80 PF12325 TMF_TATA_bd: TATA ele 88.2 21 0.00046 32.9 14.1 100 172-278 12-111 (120)
81 KOG0995 Centromere-associated 87.9 56 0.0012 37.4 25.5 156 177-359 267-441 (581)
82 PF15254 CCDC14: Coiled-coil d 87.9 39 0.00084 40.1 18.4 92 172-263 372-483 (861)
83 TIGR01005 eps_transp_fam exopo 87.6 53 0.0012 36.9 20.4 61 137-197 238-309 (754)
84 PF08317 Spc7: Spc7 kinetochor 87.4 38 0.00082 34.9 18.8 17 261-277 274-290 (325)
85 KOG0996 Structural maintenance 87.1 87 0.0019 38.8 24.7 42 536-577 830-877 (1293)
86 PF05010 TACC: Transforming ac 87.1 35 0.00075 34.2 15.5 83 60-142 70-156 (207)
87 COG2433 Uncharacterized conser 87.1 25 0.00054 40.5 16.1 76 177-252 416-498 (652)
88 PF05852 DUF848: Gammaherpesvi 86.7 5 0.00011 38.4 9.2 53 229-281 55-107 (146)
89 COG2433 Uncharacterized conser 86.3 49 0.0011 38.3 17.8 102 177-278 423-539 (652)
90 TIGR01843 type_I_hlyD type I s 86.1 40 0.00087 33.9 20.0 31 288-318 197-227 (423)
91 PRK01156 chromosome segregatio 86.1 69 0.0015 36.6 35.3 30 290-319 412-441 (895)
92 PF09755 DUF2046: Uncharacteri 85.9 52 0.0011 35.1 28.2 93 264-366 157-252 (310)
93 KOG1937 Uncharacterized conser 85.4 36 0.00079 38.2 15.9 117 229-359 301-426 (521)
94 PF11559 ADIP: Afadin- and alp 85.1 30 0.00065 31.5 14.9 111 233-360 36-150 (151)
95 PF05667 DUF812: Protein of un 84.7 78 0.0017 36.0 24.9 57 72-128 327-383 (594)
96 KOG0979 Structural maintenance 84.2 1.1E+02 0.0024 37.3 22.6 59 84-142 633-691 (1072)
97 KOG4809 Rab6 GTPase-interactin 83.9 90 0.0019 36.1 24.9 218 117-364 375-605 (654)
98 PF13514 AAA_27: AAA domain 83.7 1E+02 0.0022 36.6 29.5 90 293-382 742-833 (1111)
99 PF06008 Laminin_I: Laminin Do 83.7 48 0.001 32.8 24.6 53 188-240 165-221 (264)
100 KOG0612 Rho-associated, coiled 83.4 1.3E+02 0.0028 37.5 29.7 44 174-217 513-556 (1317)
101 PF11559 ADIP: Afadin- and alp 83.3 29 0.00063 31.6 12.1 92 175-272 58-149 (151)
102 PF12718 Tropomyosin_1: Tropom 83.1 34 0.00073 32.0 12.7 85 222-313 15-99 (143)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.0 36 0.00079 30.8 14.7 71 275-362 47-117 (132)
104 PLN02939 transferase, transfer 82.9 1.2E+02 0.0026 36.8 22.3 108 235-359 324-444 (977)
105 PRK06569 F0F1 ATP synthase sub 82.9 47 0.001 32.1 14.2 113 171-289 32-151 (155)
106 PF10146 zf-C4H2: Zinc finger- 82.4 5.6 0.00012 40.0 7.9 94 259-362 7-100 (230)
107 KOG4593 Mitotic checkpoint pro 82.4 1.1E+02 0.0024 36.0 29.9 84 48-136 46-129 (716)
108 PF01486 K-box: K-box region; 82.3 12 0.00026 32.2 8.9 81 180-264 16-100 (100)
109 TIGR03185 DNA_S_dndD DNA sulfu 82.2 91 0.002 34.9 28.8 45 78-122 207-251 (650)
110 PF10211 Ax_dynein_light: Axon 82.0 15 0.00033 35.6 10.3 119 231-359 61-186 (189)
111 KOG2077 JNK/SAPK-associated pr 81.4 40 0.00086 39.1 14.6 84 276-388 337-423 (832)
112 PF05622 HOOK: HOOK protein; 81.2 0.57 1.2E-05 52.2 0.6 156 184-366 240-407 (713)
113 COG5185 HEC1 Protein involved 80.6 77 0.0017 36.2 16.2 132 168-313 249-387 (622)
114 PF12325 TMF_TATA_bd: TATA ele 80.4 20 0.00044 33.0 10.1 47 66-115 9-55 (120)
115 PF10046 BLOC1_2: Biogenesis o 80.1 22 0.00048 31.1 9.8 68 241-308 13-80 (99)
116 KOG0976 Rho/Rac1-interacting s 79.9 1.5E+02 0.0033 36.0 19.4 80 232-311 110-193 (1265)
117 PF05266 DUF724: Protein of un 78.9 20 0.00043 35.2 10.1 49 262-320 123-171 (190)
118 PF13851 GAS: Growth-arrest sp 78.6 70 0.0015 31.4 21.5 55 92-146 32-86 (201)
119 KOG0612 Rho-associated, coiled 78.5 1.9E+02 0.004 36.2 30.2 61 81-141 462-527 (1317)
120 PF08614 ATG16: Autophagy prot 78.3 12 0.00026 35.6 8.3 74 73-146 81-154 (194)
121 TIGR00998 8a0101 efflux pump m 78.2 75 0.0016 31.5 14.4 27 293-319 185-211 (334)
122 KOG3850 Predicted membrane pro 77.9 83 0.0018 35.0 15.1 72 506-577 254-343 (455)
123 PF00901 Orbi_VP5: Orbivirus o 77.7 1.3E+02 0.0029 34.1 17.1 170 61-288 68-239 (508)
124 KOG0999 Microtubule-associated 77.2 1.4E+02 0.003 34.9 17.0 89 237-335 45-147 (772)
125 KOG0963 Transcription factor/C 77.1 1.5E+02 0.0033 34.5 30.8 103 85-194 20-125 (629)
126 KOG4673 Transcription factor T 76.7 1.7E+02 0.0037 34.9 33.6 130 76-220 412-567 (961)
127 PRK04778 septation ring format 76.4 1.3E+02 0.0028 33.4 22.7 191 113-312 254-466 (569)
128 PHA03161 hypothetical protein; 76.4 8.7 0.00019 37.2 6.7 53 229-281 55-107 (150)
129 PF04012 PspA_IM30: PspA/IM30 76.2 74 0.0016 30.4 21.7 106 67-204 21-126 (221)
130 KOG0804 Cytoplasmic Zn-finger 75.9 57 0.0012 36.7 13.4 100 184-306 348-447 (493)
131 KOG0933 Structural maintenance 75.9 2.1E+02 0.0045 35.4 31.1 41 74-114 678-718 (1174)
132 PF08614 ATG16: Autophagy prot 75.9 42 0.00091 32.1 11.2 76 183-268 116-192 (194)
133 TIGR03007 pepcterm_ChnLen poly 75.6 1.2E+02 0.0025 32.3 21.2 8 65-72 128-135 (498)
134 PRK10246 exonuclease subunit S 75.6 1.8E+02 0.004 34.7 35.4 49 72-120 529-577 (1047)
135 cd00890 Prefoldin Prefoldin is 75.4 31 0.00067 29.8 9.3 87 231-321 2-121 (129)
136 PF15294 Leu_zip: Leucine zipp 75.3 35 0.00076 35.8 11.2 83 103-188 127-209 (278)
137 PF04880 NUDE_C: NUDE protein, 75.1 4.4 9.5E-05 39.3 4.5 53 289-377 2-54 (166)
138 KOG4673 Transcription factor T 74.4 2E+02 0.0043 34.4 28.1 21 347-367 736-756 (961)
139 TIGR01010 BexC_CtrB_KpsE polys 74.2 1.1E+02 0.0024 31.4 14.9 22 171-192 244-265 (362)
140 KOG4807 F-actin binding protei 74.1 1.6E+02 0.0035 33.2 17.5 159 125-311 352-536 (593)
141 COG1579 Zn-ribbon protein, pos 74.1 1.1E+02 0.0024 31.5 21.1 72 241-313 44-115 (239)
142 PF06818 Fez1: Fez1; InterPro 73.9 27 0.00059 35.1 9.7 144 177-337 18-177 (202)
143 PF04156 IncA: IncA protein; 73.8 77 0.0017 29.5 15.7 38 181-218 79-116 (191)
144 KOG0946 ER-Golgi vesicle-tethe 72.9 2.2E+02 0.0049 34.4 21.5 21 284-304 845-865 (970)
145 PF04111 APG6: Autophagy prote 72.8 44 0.00096 34.7 11.2 94 60-154 30-123 (314)
146 PRK10929 putative mechanosensi 72.6 2.4E+02 0.0053 34.7 29.8 207 67-282 59-312 (1109)
147 KOG0018 Structural maintenance 72.6 2.5E+02 0.0054 34.8 21.8 219 79-315 226-479 (1141)
148 KOG0964 Structural maintenance 72.4 2.5E+02 0.0054 34.7 23.4 107 187-296 408-516 (1200)
149 PF12777 MT: Microtubule-bindi 72.0 17 0.00038 37.5 8.2 81 66-146 214-294 (344)
150 COG1842 PspA Phage shock prote 71.9 1.2E+02 0.0025 30.7 17.8 122 192-316 19-149 (225)
151 PF13747 DUF4164: Domain of un 71.9 16 0.00034 32.0 6.7 58 266-323 11-68 (89)
152 KOG2991 Splicing regulator [RN 71.9 18 0.00039 38.3 8.2 123 68-205 171-307 (330)
153 COG2825 HlpA Outer membrane pr 71.4 48 0.001 31.9 10.4 88 171-259 39-130 (170)
154 PF15397 DUF4618: Domain of un 71.2 1.4E+02 0.003 31.2 19.6 159 106-281 65-232 (258)
155 PF13166 AAA_13: AAA domain 71.1 1.7E+02 0.0037 32.3 16.0 150 169-320 308-464 (712)
156 PF00769 ERM: Ezrin/radixin/mo 70.9 44 0.00095 33.6 10.4 162 88-262 55-218 (246)
157 PF07106 TBPIP: Tat binding pr 70.4 20 0.00044 33.2 7.5 59 71-129 77-137 (169)
158 PF06810 Phage_GP20: Phage min 70.2 71 0.0015 30.3 11.1 69 60-133 6-76 (155)
159 KOG0962 DNA repair protein RAD 69.7 3E+02 0.0065 34.6 25.0 70 289-367 1010-1079(1294)
160 smart00338 BRLZ basic region l 69.3 39 0.00084 27.0 7.9 57 198-254 3-59 (65)
161 PF04012 PspA_IM30: PspA/IM30 69.2 1.1E+02 0.0024 29.3 19.5 163 193-374 19-189 (221)
162 PF09730 BicD: Microtubule-ass 68.8 2.4E+02 0.0053 33.2 24.2 102 181-312 357-458 (717)
163 PF09787 Golgin_A5: Golgin sub 68.3 1.9E+02 0.0042 31.8 20.9 120 231-359 158-297 (511)
164 PRK10884 SH3 domain-containing 68.2 49 0.0011 32.9 10.0 75 68-142 88-166 (206)
165 PF11068 YlqD: YlqD protein; 67.7 25 0.00054 33.0 7.4 62 100-161 12-73 (131)
166 PF08232 Striatin: Striatin fa 67.5 20 0.00043 33.2 6.7 44 348-391 23-66 (134)
167 PF10146 zf-C4H2: Zinc finger- 66.6 91 0.002 31.6 11.7 79 111-201 14-92 (230)
168 PRK13729 conjugal transfer pil 66.1 19 0.00042 40.1 7.4 27 230-256 71-97 (475)
169 PRK04778 septation ring format 65.3 2.3E+02 0.0049 31.5 29.7 152 163-316 159-339 (569)
170 PF01576 Myosin_tail_1: Myosin 64.9 2.1 4.6E-05 49.4 0.0 42 229-270 582-623 (859)
171 PF13863 DUF4200: Domain of un 63.9 1E+02 0.0022 27.0 14.9 101 185-292 9-110 (126)
172 PF14992 TMCO5: TMCO5 family 63.8 1E+02 0.0022 32.6 11.6 53 262-314 122-180 (280)
173 COG3883 Uncharacterized protei 63.8 2E+02 0.0043 30.3 15.2 141 74-219 39-228 (265)
174 PLN02939 transferase, transfer 63.7 3.5E+02 0.0075 33.1 19.0 130 240-372 224-380 (977)
175 TIGR00634 recN DNA repair prot 63.6 2.4E+02 0.0052 31.2 22.3 68 78-146 159-226 (563)
176 PF02403 Seryl_tRNA_N: Seryl-t 62.8 54 0.0012 28.2 8.2 72 67-138 23-97 (108)
177 cd00584 Prefoldin_alpha Prefol 62.8 68 0.0015 28.4 8.9 88 231-322 2-122 (129)
178 KOG4637 Adaptor for phosphoino 62.5 2.6E+02 0.0057 31.3 15.8 105 74-202 140-249 (464)
179 KOG4484 Uncharacterized conser 62.4 42 0.0009 33.8 8.2 78 194-285 28-108 (199)
180 PF12329 TMF_DNA_bd: TATA elem 62.1 75 0.0016 27.0 8.7 51 77-127 2-52 (74)
181 TIGR02977 phageshock_pspA phag 62.0 1.6E+02 0.0035 28.7 17.1 54 67-124 22-75 (219)
182 TIGR02231 conserved hypothetic 61.7 87 0.0019 33.9 11.2 27 287-313 145-171 (525)
183 PF07106 TBPIP: Tat binding pr 61.4 60 0.0013 30.2 8.7 62 72-133 71-134 (169)
184 PF05597 Phasin: Poly(hydroxya 61.3 1.3E+02 0.0029 28.3 10.9 84 197-280 36-126 (132)
185 TIGR01005 eps_transp_fam exopo 60.6 2.9E+02 0.0063 31.2 23.8 88 228-317 316-406 (754)
186 PF09789 DUF2353: Uncharacteri 60.4 2.4E+02 0.0053 30.2 16.5 157 207-387 5-177 (319)
187 PRK10476 multidrug resistance 60.1 2E+02 0.0044 29.2 14.0 23 172-194 82-104 (346)
188 PRK10246 exonuclease subunit S 59.3 3.8E+02 0.0083 32.1 29.7 55 264-318 823-884 (1047)
189 PF09755 DUF2046: Uncharacteri 59.1 2.6E+02 0.0056 30.1 25.7 53 292-361 227-279 (310)
190 COG1730 GIM5 Predicted prefold 58.7 92 0.002 29.9 9.6 85 230-318 8-125 (145)
191 PRK10361 DNA recombination pro 58.6 3.1E+02 0.0068 30.9 16.8 92 173-297 137-230 (475)
192 PF04849 HAP1_N: HAP1 N-termin 57.9 2.7E+02 0.0058 29.9 15.3 174 190-381 55-265 (306)
193 PRK06569 F0F1 ATP synthase sub 57.7 94 0.002 30.1 9.5 70 78-149 60-130 (155)
194 PF07058 Myosin_HC-like: Myosi 57.4 67 0.0015 34.8 9.2 61 189-256 13-80 (351)
195 KOG0980 Actin-binding protein 57.3 4.4E+02 0.0096 32.3 23.0 135 175-316 364-516 (980)
196 PF08580 KAR9: Yeast cortical 56.9 2.8E+02 0.006 32.3 14.6 25 109-133 51-75 (683)
197 PF04156 IncA: IncA protein; 56.1 1.7E+02 0.0038 27.2 11.7 31 112-142 120-150 (191)
198 PF09730 BicD: Microtubule-ass 56.1 4.1E+02 0.0088 31.5 16.9 106 157-276 607-716 (717)
199 TIGR00293 prefoldin, archaeal 54.9 1E+02 0.0023 27.1 8.7 88 231-322 2-121 (126)
200 PF13514 AAA_27: AAA domain 54.8 4.5E+02 0.0097 31.6 35.1 184 183-378 743-975 (1111)
201 TIGR03017 EpsF chain length de 54.7 2.7E+02 0.0059 29.0 16.9 150 74-241 216-369 (444)
202 smart00787 Spc7 Spc7 kinetocho 54.2 2.9E+02 0.0062 29.1 18.8 56 122-189 137-192 (312)
203 PF09744 Jnk-SapK_ap_N: JNK_SA 53.8 1.6E+02 0.0035 28.4 10.4 79 171-255 28-109 (158)
204 PRK10476 multidrug resistance 53.2 2.6E+02 0.0057 28.4 12.8 20 81-100 87-106 (346)
205 PF14197 Cep57_CLD_2: Centroso 52.9 88 0.0019 26.5 7.6 66 174-249 3-68 (69)
206 PF04111 APG6: Autophagy prote 52.9 91 0.002 32.5 9.2 59 74-132 65-123 (314)
207 PF09304 Cortex-I_coil: Cortex 52.7 2E+02 0.0043 26.9 12.2 64 173-246 13-76 (107)
208 PRK10865 protein disaggregatio 52.5 3E+02 0.0064 32.5 14.1 24 313-342 529-552 (857)
209 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.5 1.8E+02 0.004 26.4 17.2 46 266-311 83-129 (132)
210 TIGR03794 NHPM_micro_HlyD NHPM 51.9 3.1E+02 0.0067 28.8 16.6 53 286-338 226-284 (421)
211 TIGR02977 phageshock_pspA phag 51.8 2.4E+02 0.0052 27.6 20.2 51 174-224 29-79 (219)
212 TIGR02231 conserved hypothetic 51.3 1.3E+02 0.0028 32.6 10.5 26 181-206 129-154 (525)
213 PF04508 Pox_A_type_inc: Viral 50.3 16 0.00035 25.9 2.4 20 230-249 3-22 (23)
214 PF05008 V-SNARE: Vesicle tran 49.9 76 0.0017 25.8 6.6 56 112-199 22-77 (79)
215 PF14197 Cep57_CLD_2: Centroso 49.2 1.6E+02 0.0036 24.9 8.8 60 71-133 3-65 (69)
216 KOG4403 Cell surface glycoprot 49.1 1.4E+02 0.003 33.9 10.3 22 74-95 253-274 (575)
217 PF12329 TMF_DNA_bd: TATA elem 48.9 1.7E+02 0.0036 24.9 10.0 71 233-313 3-73 (74)
218 KOG4603 TBP-1 interacting prot 48.5 3.1E+02 0.0068 27.9 12.6 99 182-310 78-178 (201)
219 PF04849 HAP1_N: HAP1 N-termin 48.4 3.8E+02 0.0082 28.8 19.3 27 228-254 276-302 (306)
220 PRK10807 paraquat-inducible pr 48.4 1.1E+02 0.0024 34.3 9.6 37 172-208 432-468 (547)
221 PF14988 DUF4515: Domain of un 48.2 2.9E+02 0.0063 27.5 19.5 97 137-276 30-127 (206)
222 PF06632 XRCC4: DNA double-str 48.2 2.4E+02 0.0052 30.3 11.6 66 237-302 139-209 (342)
223 KOG2685 Cystoskeletal protein 48.1 1.7E+02 0.0037 32.7 10.7 44 177-220 286-329 (421)
224 PF01576 Myosin_tail_1: Myosin 48.0 6 0.00013 45.8 0.0 290 60-364 19-342 (859)
225 PF14662 CCDC155: Coiled-coil 47.8 3.2E+02 0.0069 27.8 21.5 126 122-312 60-190 (193)
226 PF05622 HOOK: HOOK protein; 47.6 6.2 0.00013 44.3 0.0 36 338-373 320-356 (713)
227 TIGR00998 8a0101 efflux pump m 47.6 3E+02 0.0064 27.4 14.0 28 71-98 78-105 (334)
228 TIGR02894 DNA_bind_RsfA transc 47.5 1.1E+02 0.0024 30.1 8.4 34 227-260 117-151 (161)
229 PF12761 End3: Actin cytoskele 47.4 1.3E+02 0.0027 30.5 8.9 70 73-142 96-194 (195)
230 PF08647 BRE1: BRE1 E3 ubiquit 47.0 1.5E+02 0.0033 26.0 8.4 37 107-143 30-66 (96)
231 PF03148 Tektin: Tektin family 47.0 3.9E+02 0.0084 28.5 26.0 33 85-117 62-94 (384)
232 PRK10698 phage shock protein P 46.9 3.1E+02 0.0067 27.4 22.1 31 175-205 98-128 (222)
233 PF03194 LUC7: LUC7 N_terminus 46.7 99 0.0021 31.5 8.2 51 226-278 121-171 (254)
234 COG4372 Uncharacterized protei 45.7 5E+02 0.011 29.4 27.2 36 283-318 248-283 (499)
235 PF11932 DUF3450: Protein of u 45.6 2.4E+02 0.0052 27.9 10.5 35 350-390 131-165 (251)
236 PRK09343 prefoldin subunit bet 45.4 2.4E+02 0.0052 25.7 12.7 70 187-256 18-92 (121)
237 PF10473 CENP-F_leu_zip: Leuci 45.3 2.8E+02 0.0062 26.5 15.9 49 191-245 88-136 (140)
238 PRK10698 phage shock protein P 44.9 3.3E+02 0.0072 27.1 17.9 51 174-224 29-79 (222)
239 cd09234 V_HD-PTP_like Protein- 43.4 4E+02 0.0087 27.7 22.8 197 98-323 7-226 (337)
240 COG0497 RecN ATPase involved i 43.2 5.8E+02 0.013 29.5 22.5 104 129-260 205-309 (557)
241 cd07675 F-BAR_FNBP1L The F-BAR 43.1 4E+02 0.0086 27.6 13.7 90 171-261 94-196 (252)
242 COG1842 PspA Phage shock prote 43.1 3.7E+02 0.0081 27.2 21.8 54 68-125 23-76 (225)
243 KOG0239 Kinesin (KAR3 subfamil 43.0 6.1E+02 0.013 29.7 16.9 77 108-200 175-251 (670)
244 PF06810 Phage_GP20: Phage min 42.8 3.1E+02 0.0066 26.2 10.4 28 237-264 53-80 (155)
245 KOG4360 Uncharacterized coiled 42.3 1.2E+02 0.0026 34.8 8.7 71 73-143 226-303 (596)
246 PF07111 HCR: Alpha helical co 41.8 6.9E+02 0.015 30.0 23.7 193 181-387 78-279 (739)
247 TIGR03007 pepcterm_ChnLen poly 41.8 4.6E+02 0.01 27.9 21.8 25 108-132 161-185 (498)
248 PF05130 FlgN: FlgN protein; 41.8 2.2E+02 0.0047 24.1 11.4 84 173-256 2-109 (143)
249 PF10234 Cluap1: Clusterin-ass 41.5 3E+02 0.0065 28.9 10.8 113 148-260 135-254 (267)
250 KOG0243 Kinesin-like protein [ 41.0 8E+02 0.017 30.5 22.5 75 72-146 410-507 (1041)
251 cd07657 F-BAR_Fes_Fer The F-BA 40.8 3.9E+02 0.0085 26.9 12.3 104 149-252 70-185 (237)
252 PF08317 Spc7: Spc7 kinetochor 40.6 4.4E+02 0.0095 27.3 21.7 64 140-203 111-176 (325)
253 PF12072 DUF3552: Domain of un 40.5 3.2E+02 0.007 26.5 10.4 77 180-269 68-144 (201)
254 COG4026 Uncharacterized protei 40.3 1.8E+02 0.0039 30.7 9.0 134 105-281 74-209 (290)
255 PF13935 Ead_Ea22: Ead/Ea22-li 40.3 1.3E+02 0.0029 27.8 7.4 39 240-283 72-110 (139)
256 KOG1962 B-cell receptor-associ 39.9 70 0.0015 32.6 5.9 35 69-103 154-188 (216)
257 TIGR02894 DNA_bind_RsfA transc 39.5 1.7E+02 0.0037 28.9 8.3 25 230-254 99-123 (161)
258 PRK10780 periplasmic chaperone 38.9 2.4E+02 0.0051 26.4 8.9 50 170-219 37-86 (165)
259 PF04065 Not3: Not1 N-terminal 38.8 4.2E+02 0.0091 27.2 11.2 26 225-250 119-144 (233)
260 PF05384 DegS: Sensor protein 38.7 3.8E+02 0.0083 26.1 12.7 111 200-319 6-123 (159)
261 PRK11519 tyrosine kinase; Prov 38.0 5.4E+02 0.012 29.5 13.0 31 208-241 367-397 (719)
262 PF11932 DUF3450: Protein of u 37.9 4.1E+02 0.009 26.3 11.7 74 74-147 22-95 (251)
263 PF15397 DUF4618: Domain of un 37.7 5.1E+02 0.011 27.2 17.8 141 177-358 82-222 (258)
264 PF08537 NBP1: Fungal Nap bind 36.7 1.5E+02 0.0032 32.0 8.0 48 78-139 180-227 (323)
265 smart00502 BBC B-Box C-termina 36.5 2.5E+02 0.0054 23.3 16.2 73 227-299 49-124 (127)
266 PF05529 Bap31: B-cell recepto 36.4 1.7E+02 0.0036 27.8 7.6 10 74-83 116-125 (192)
267 KOG0247 Kinesin-like protein [ 36.2 3.5E+02 0.0076 32.5 11.3 105 97-229 512-620 (809)
268 TIGR02971 heterocyst_DevB ABC 36.2 4.5E+02 0.0098 26.2 12.8 19 154-172 115-133 (327)
269 PF00170 bZIP_1: bZIP transcri 36.1 2.3E+02 0.0049 22.7 7.8 52 202-253 7-58 (64)
270 PF05700 BCAS2: Breast carcino 35.9 4E+02 0.0087 26.3 10.3 83 113-198 134-218 (221)
271 PF05483 SCP-1: Synaptonemal c 35.4 8.7E+02 0.019 29.3 28.1 219 78-317 441-684 (786)
272 PF04508 Pox_A_type_inc: Viral 35.4 38 0.00082 24.1 2.3 20 74-93 2-21 (23)
273 PF06818 Fez1: Fez1; InterPro 35.0 5.1E+02 0.011 26.4 20.6 96 74-195 11-106 (202)
274 PF10018 Med4: Vitamin-D-recep 34.9 2.9E+02 0.0064 26.5 9.0 59 230-306 4-62 (188)
275 KOG1962 B-cell receptor-associ 34.5 1.8E+02 0.0039 29.8 7.8 76 73-153 111-188 (216)
276 KOG2010 Double stranded RNA bi 34.2 1.1E+02 0.0023 33.6 6.5 65 58-122 139-203 (405)
277 PF14916 CCDC92: Coiled-coil d 34.0 78 0.0017 26.8 4.4 39 233-275 1-40 (60)
278 cd08325 CARD_CASP1-like Caspas 33.7 19 0.00042 30.7 0.9 44 505-548 14-60 (83)
279 PF10186 Atg14: UV radiation r 33.5 4.5E+02 0.0098 25.4 15.7 41 510-551 255-297 (302)
280 PF13600 DUF4140: N-terminal d 33.5 60 0.0013 27.7 3.8 37 171-207 65-101 (104)
281 PF10198 Ada3: Histone acetylt 33.4 1.7E+02 0.0036 27.5 6.9 55 66-133 33-89 (131)
282 TIGR03319 YmdA_YtgF conserved 33.4 7.4E+02 0.016 27.8 14.3 14 284-297 164-177 (514)
283 COG0419 SbcC ATPase involved i 33.4 8.6E+02 0.019 28.6 36.2 30 286-315 416-445 (908)
284 KOG0971 Microtubule-associated 33.2 1.1E+03 0.023 29.7 25.4 127 178-304 398-542 (1243)
285 KOG3990 Uncharacterized conser 33.0 2.3E+02 0.0051 30.3 8.5 37 512-548 225-261 (305)
286 PF08702 Fib_alpha: Fibrinogen 33.0 3.2E+02 0.0068 25.9 8.7 32 173-204 101-132 (146)
287 PF12795 MscS_porin: Mechanose 32.9 4.9E+02 0.011 25.6 14.8 133 62-194 27-168 (240)
288 PF12777 MT: Microtubule-bindi 32.9 2.4E+02 0.0052 29.4 8.7 22 112-133 239-260 (344)
289 TIGR00293 prefoldin, archaeal 32.8 3.5E+02 0.0075 23.9 9.0 41 179-219 82-122 (126)
290 PLN02320 seryl-tRNA synthetase 32.7 2E+02 0.0044 32.4 8.6 65 67-131 87-153 (502)
291 PF10359 Fmp27_WPPW: RNA pol I 32.6 2.2E+02 0.0047 31.2 8.6 70 64-134 154-226 (475)
292 PF11365 DUF3166: Protein of u 32.4 64 0.0014 29.3 3.9 27 237-267 3-29 (96)
293 PF10168 Nup88: Nuclear pore c 32.3 8.9E+02 0.019 28.5 15.4 174 18-245 487-663 (717)
294 PF12761 End3: Actin cytoskele 32.2 1.2E+02 0.0026 30.6 6.1 36 182-217 159-194 (195)
295 KOG2150 CCR4-NOT transcription 32.0 6.7E+02 0.015 29.2 12.4 96 180-284 42-143 (575)
296 PF01166 TSC22: TSC-22/dip/bun 32.0 67 0.0015 27.3 3.7 26 229-254 15-40 (59)
297 PRK03947 prefoldin subunit alp 31.9 3.9E+02 0.0084 24.1 9.3 91 230-324 8-131 (140)
298 PF08172 CASP_C: CASP C termin 31.7 58 0.0013 33.2 4.0 22 178-199 95-116 (248)
299 PF07820 TraC: TraC-like prote 31.4 1.7E+02 0.0037 26.7 6.4 48 188-246 7-54 (92)
300 PF13870 DUF4201: Domain of un 31.3 4.5E+02 0.0097 24.7 19.6 172 178-367 1-176 (177)
301 PF13815 Dzip-like_N: Iguana/D 31.0 3.1E+02 0.0067 24.6 8.0 61 211-271 55-116 (118)
302 PF02970 TBCA: Tubulin binding 30.7 3.7E+02 0.008 23.5 9.6 72 200-282 7-78 (90)
303 PF08700 Vps51: Vps51/Vps67; 30.7 3E+02 0.0065 22.5 9.2 82 52-141 3-84 (87)
304 PF01920 Prefoldin_2: Prefoldi 30.6 3.2E+02 0.0069 22.8 7.8 39 105-143 59-97 (106)
305 KOG0999 Microtubule-associated 30.3 9.9E+02 0.021 28.4 19.9 126 134-276 606-731 (772)
306 PF05266 DUF724: Protein of un 30.1 5.5E+02 0.012 25.4 12.7 48 233-280 129-176 (190)
307 PRK04406 hypothetical protein; 30.0 3.5E+02 0.0077 23.2 7.8 49 107-156 3-51 (75)
308 KOG0796 Spliceosome subunit [R 29.6 3.3E+02 0.0072 29.5 9.1 69 217-289 111-179 (319)
309 PF06548 Kinesin-related: Kine 29.5 5.3E+02 0.011 29.5 10.9 86 176-274 385-484 (488)
310 PRK05431 seryl-tRNA synthetase 29.4 2.5E+02 0.0054 30.4 8.4 27 72-98 27-53 (425)
311 PRK12704 phosphodiesterase; Pr 29.3 8.6E+02 0.019 27.4 14.7 66 233-298 112-184 (520)
312 KOG3990 Uncharacterized conser 29.1 92 0.002 33.1 4.9 53 191-264 226-278 (305)
313 KOG3501 Molecular chaperone Pr 29.1 5.1E+02 0.011 24.6 10.0 95 108-207 3-98 (114)
314 PF14662 CCDC155: Coiled-coil 29.0 6.4E+02 0.014 25.7 18.9 135 175-318 7-147 (193)
315 PF05837 CENP-H: Centromere pr 28.1 4.4E+02 0.0095 23.6 9.8 49 228-276 3-51 (106)
316 PF10458 Val_tRNA-synt_C: Valy 28.1 2.6E+02 0.0056 22.8 6.4 50 263-312 4-64 (66)
317 PF04108 APG17: Autophagy prot 28.1 7.9E+02 0.017 26.5 15.3 165 70-239 196-378 (412)
318 PF13863 DUF4200: Domain of un 28.0 4.1E+02 0.0089 23.2 12.0 44 83-126 3-46 (126)
319 PF15188 CCDC-167: Coiled-coil 27.9 1.2E+02 0.0026 27.1 4.8 62 115-194 5-68 (85)
320 PLN02678 seryl-tRNA synthetase 27.9 2.3E+02 0.0049 31.4 7.8 62 71-132 31-95 (448)
321 KOG0614 cGMP-dependent protein 27.8 1.6E+02 0.0034 34.4 6.8 47 76-122 27-73 (732)
322 COG1382 GimC Prefoldin, chaper 27.5 5.3E+02 0.012 24.4 9.5 80 71-151 25-113 (119)
323 PRK03598 putative efflux pump 27.2 6.6E+02 0.014 25.3 13.2 24 110-133 116-139 (331)
324 PF05103 DivIVA: DivIVA protei 27.0 41 0.00088 29.3 1.7 40 209-248 80-120 (131)
325 KOG2895 Uncharacterized conser 26.5 33 0.00073 37.2 1.4 33 253-285 363-395 (408)
326 PF10153 DUF2361: Uncharacteri 26.5 5.3E+02 0.011 24.0 9.3 78 195-283 2-79 (114)
327 PF04977 DivIC: Septum formati 26.4 1.6E+02 0.0035 23.4 5.0 26 74-99 25-50 (80)
328 KOG0709 CREB/ATF family transc 26.4 1.6E+02 0.0034 33.4 6.3 61 200-260 251-312 (472)
329 PF15112 DUF4559: Domain of un 26.3 2E+02 0.0043 31.0 6.8 99 287-390 163-269 (307)
330 COG4487 Uncharacterized protei 26.2 6.3E+02 0.014 28.6 10.8 39 542-580 365-403 (438)
331 TIGR00414 serS seryl-tRNA synt 26.1 3.5E+02 0.0077 29.2 8.8 27 72-98 29-55 (418)
332 TIGR01000 bacteriocin_acc bact 25.8 8.5E+02 0.018 26.1 19.1 12 376-387 303-314 (457)
333 PF09731 Mitofilin: Mitochondr 25.7 9.2E+02 0.02 26.5 27.1 19 65-83 218-236 (582)
334 KOG4001 Axonemal dynein light 25.6 3.8E+02 0.0082 28.1 8.4 65 183-265 185-251 (259)
335 PRK10869 recombination and rep 25.5 9.9E+02 0.022 26.8 22.0 64 82-146 159-222 (553)
336 TIGR03752 conj_TIGR03752 integ 25.5 3E+02 0.0064 31.2 8.2 27 177-203 60-86 (472)
337 TIGR02971 heterocyst_DevB ABC 25.4 6.9E+02 0.015 25.0 15.3 30 289-318 181-210 (327)
338 PRK09841 cryptic autophosphory 25.4 1.1E+03 0.023 27.2 13.4 72 172-257 342-413 (726)
339 PRK13848 conjugal transfer pro 25.3 99 0.0021 28.5 3.9 29 189-226 9-37 (98)
340 PRK00409 recombination and DNA 25.1 1.2E+03 0.026 27.6 15.1 42 196-237 512-553 (782)
341 PF14389 Lzipper-MIP1: Leucine 24.9 3E+02 0.0066 24.0 6.7 17 263-279 61-77 (88)
342 PF15372 DUF4600: Domain of un 24.9 2.4E+02 0.0052 27.0 6.4 51 102-152 52-102 (129)
343 PF09763 Sec3_C: Exocyst compl 24.8 1.1E+03 0.023 27.0 13.5 105 174-299 49-163 (701)
344 PRK11519 tyrosine kinase; Prov 24.8 1.1E+03 0.024 27.1 18.2 27 107-133 266-292 (719)
345 PLN03188 kinesin-12 family pro 24.5 1.6E+03 0.034 28.9 19.4 86 176-274 1155-1254(1320)
346 PF06305 DUF1049: Protein of u 24.5 72 0.0016 25.2 2.6 22 557-578 47-68 (68)
347 PF07716 bZIP_2: Basic region 24.4 3.5E+02 0.0076 21.2 7.5 43 207-249 11-53 (54)
348 PRK09413 IS2 repressor TnpA; R 24.3 1.1E+02 0.0024 27.1 4.0 29 230-258 73-101 (121)
349 PF12072 DUF3552: Domain of un 23.9 6.8E+02 0.015 24.3 10.2 27 108-134 71-97 (201)
350 PF10498 IFT57: Intra-flagella 23.7 9.5E+02 0.021 26.0 14.1 29 337-365 329-357 (359)
351 KOG0980 Actin-binding protein 23.6 1.5E+03 0.032 28.2 33.5 82 231-312 462-544 (980)
352 PF05008 V-SNARE: Vesicle tran 23.2 4.1E+02 0.0089 21.6 8.7 50 263-312 25-79 (79)
353 PF06698 DUF1192: Protein of u 23.2 1.2E+02 0.0026 25.5 3.7 32 175-206 27-58 (59)
354 PLN03229 acetyl-coenzyme A car 22.7 1.4E+03 0.031 27.6 15.6 167 112-305 433-660 (762)
355 PF03357 Snf7: Snf7; InterPro 22.2 5.7E+02 0.012 22.8 8.9 101 178-283 10-121 (171)
356 PF08581 Tup_N: Tup N-terminal 22.1 1.9E+02 0.0041 25.3 4.8 59 514-579 13-71 (79)
357 PTZ00446 vacuolar sorting prot 21.9 8.2E+02 0.018 24.6 15.4 49 107-161 26-75 (191)
358 PF05852 DUF848: Gammaherpesvi 21.7 4.6E+02 0.0099 25.6 7.7 58 74-131 55-112 (146)
359 PF08647 BRE1: BRE1 E3 ubiquit 21.7 5.5E+02 0.012 22.5 10.0 25 234-258 44-68 (96)
360 TIGR02209 ftsL_broad cell divi 21.6 1.9E+02 0.0042 23.7 4.7 41 72-112 30-70 (85)
361 PRK06835 DNA replication prote 21.6 5.1E+02 0.011 27.3 8.7 69 235-306 4-84 (329)
362 PRK00888 ftsB cell division pr 21.5 2.9E+02 0.0062 24.9 6.0 28 232-259 45-72 (105)
363 PF10828 DUF2570: Protein of u 21.4 5.9E+02 0.013 22.7 9.1 63 185-250 20-82 (110)
364 KOG2180 Late Golgi protein sor 21.4 1.3E+03 0.029 27.9 12.6 88 99-190 68-164 (793)
365 PF00769 ERM: Ezrin/radixin/mo 21.3 8.7E+02 0.019 24.6 14.5 38 181-218 80-117 (246)
366 PF04201 TPD52: Tumour protein 21.2 2.1E+02 0.0046 28.3 5.5 40 182-221 28-67 (162)
367 PF12795 MscS_porin: Mechanose 21.2 8E+02 0.017 24.2 18.2 91 288-383 100-190 (240)
368 PRK15136 multidrug efflux syst 21.1 1E+03 0.022 25.2 12.8 33 304-336 207-244 (390)
369 TIGR01730 RND_mfp RND family e 20.9 3.5E+02 0.0075 26.2 6.9 36 171-206 59-94 (322)
370 PF01920 Prefoldin_2: Prefoldi 20.8 5E+02 0.011 21.6 9.2 37 172-208 58-94 (106)
371 cd00632 Prefoldin_beta Prefold 20.7 5.7E+02 0.012 22.3 8.5 42 103-144 58-99 (105)
372 PF11365 DUF3166: Protein of u 20.7 4.8E+02 0.01 23.9 7.2 71 120-197 6-83 (96)
373 PF09738 DUF2051: Double stran 20.6 3.2E+02 0.0069 29.0 7.0 22 231-252 229-250 (302)
374 cd07636 BAR_GRAF The Bin/Amphi 20.6 9E+02 0.02 24.6 16.9 165 122-305 2-176 (207)
375 PF10498 IFT57: Intra-flagella 20.6 4.3E+02 0.0092 28.5 8.0 31 114-144 279-309 (359)
376 KOG0978 E3 ubiquitin ligase in 20.4 1.5E+03 0.033 27.1 32.5 103 208-312 434-549 (698)
377 PRK09841 cryptic autophosphory 20.4 1.3E+03 0.029 26.5 18.9 27 107-133 266-292 (726)
378 KOG2685 Cystoskeletal protein 20.4 7.9E+02 0.017 27.7 10.1 80 76-156 288-391 (421)
379 COG0233 Frr Ribosome recycling 20.3 1.4E+02 0.0031 30.0 4.2 34 182-215 152-186 (187)
380 KOG2220 Predicted signal trans 20.3 1.5E+03 0.032 26.9 22.6 127 215-344 453-604 (714)
381 KOG4572 Predicted DNA-binding 20.3 1.7E+03 0.038 27.8 18.9 216 92-310 898-1152(1424)
382 PF03961 DUF342: Protein of un 20.3 2.7E+02 0.0059 29.9 6.6 35 67-101 326-362 (451)
383 TIGR03346 chaperone_ClpB ATP-d 20.2 1.5E+03 0.032 26.8 13.4 34 515-548 770-803 (852)
384 PF10205 KLRAQ: Predicted coil 20.1 7E+02 0.015 23.2 8.2 51 194-254 23-73 (102)
No 1
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=100.00 E-value=6.8e-154 Score=1144.68 Aligned_cols=341 Identities=79% Similarity=1.067 Sum_probs=324.9
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDR 308 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLer 308 (618)
|||||||+||||||||||||||||||||||||||+|||||||||+||||||||||||||||||||||++|||||++||||
T Consensus 1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 007087 309 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLR 388 (618)
Q Consensus 309 ELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLKeK~klRLk~lEe~Lk 388 (618)
|||||||+||||||||||||||+||||||||||||||||||||||||||||||+|||||+|+|||||||+|||+|||+|+
T Consensus 81 ELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 81 ELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccCCCCccccCCCCccccccccccccccccCCccCcc-----hhhhhhcccCCccccCCCCcccc
Q 007087 389 GSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLS-----SSTVLKHAKGTSKSFDGGTRSLD 463 (618)
Q Consensus 389 ~~~~~~~~~~~~~r~~s~gp~rr~s~gg~~~~~~l~sng~~~kr~~~sq~r~-----s~~~l~~a~~~s~sfdgg~rsld 463 (618)
+++|++++++++++|.++||++|+++||+++++++++||++.||+|+||||+ ++++|+|++++|+|||||++++|
T Consensus 161 ~~~s~~~~~~~~~~s~~~gps~r~~lgg~~~~~~~~sng~~~kr~~~sq~r~s~~~~~~~~lk~~~~~s~sfdgg~rsld 240 (351)
T PF07058_consen 161 GSSSNSSRPTSEGKSPSNGPSRRQSLGGAENFSKLSSNGGLSKRRPSSQPRSSLSGSSSPVLKHAKGTSKSFDGGSRSLD 240 (351)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCcCCCCccccccccCCCccccCCCcccccccccccchhhhcccccCccccccCCCcch
Confidence 9999999999999999999999999999999999999999999999999996 45789999999999999999999
Q ss_pred ccccccCCC----CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhhhcccccccch
Q 007087 464 RSKVLLNGS----PN-QSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDK 538 (618)
Q Consensus 464 r~k~~~n~~----~n-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~D~Vsg~LYD~LQKEVi~LRKa~~eKdqsLkdK 538 (618)
++++..||. ++ ++++.+..++..+++.+ +++++++++++|+||||||||||||||+|||+||+|||||+||
T Consensus 241 ~~k~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~VsG~LYD~LQKEVi~LRKac~eKdqsLkdK 316 (351)
T PF07058_consen 241 RSKVLANGPENHPVNSKSTDASKEAEKENSEEK----PNSEKPNSESEDSVSGFLYDMLQKEVINLRKACHEKDQSLKDK 316 (351)
T ss_pred hhhhhhcCccccccccchhhhhhhccccCcccc----cccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999993 33 56666666665444443 2346677899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHH
Q 007087 539 DDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKE 573 (618)
Q Consensus 539 ddaIeML~KKVdtLtKamEVEaKKmrREvaa~EKE 573 (618)
||||+||+|||||||||||||+|||||||||||||
T Consensus 317 DdaIeMLaKKVdtLtKAmEVEaKKmrREvAamEKE 351 (351)
T PF07058_consen 317 DDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKE 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999997
No 2
>PRK11637 AmiB activator; Provisional
Probab=98.18 E-value=0.0012 Score=68.30 Aligned_cols=212 Identities=14% Similarity=0.193 Sum_probs=98.9
Q ss_pred CCCCCCCCCCCChhHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007087 47 RRRPVRPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKL 126 (618)
Q Consensus 47 r~~~~r~~~~~~~~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~ 126 (618)
||-..||-+-.- =|+..+.+. |+......+++++....+++...+.+|+.++-....-.+.+..+..++..+..++..
T Consensus 16 ~~~~~~~~~~~~-ll~~~~~~~-~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~ 93 (428)
T PRK11637 16 RRFAIRPILYAS-VLSAGVLLC-AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE 93 (428)
T ss_pred hhhhhhhHHHHH-HHHHHHHHh-hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677765543 233333333 433333345555555555555555555555544444455555555555555555555
Q ss_pred hHHHhhhhhhhhhhhhhHHH---HhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccH--HHHH--HHHHHHHHhhhch
Q 007087 127 AENLIETKNLEIKKINDEKR---ASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLE--AELK--LARQEIAKLQDDN 199 (618)
Q Consensus 127 tE~lle~knLEiKklndEKK---~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLe--Aelk--~~r~Ei~kLqddn 199 (618)
++..+...+-+|.+++.+-. ..+..+....+ +|+.+..+..++.+++.|+..=. .-.+ .|=..|. +.|.
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~--~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~--~~d~ 169 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA--AQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLN--QARQ 169 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHH--HHHH
Confidence 55555555555555554322 12222222222 22334445556667777776321 1111 1111233 2245
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 200 KALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 200 kALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
+.++.+...++.. . ..-.+|+++..+|..++...+.+..-|+....++-.++.+|.+.+.+.+..
T Consensus 170 ~~l~~l~~~~~~L-~-------------~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~ 234 (428)
T PRK11637 170 ETIAELKQTREEL-A-------------AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQ 234 (428)
T ss_pred HHHHHHHHHHHHH-H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443321 1 112334444444444444444555555554455555555555555544433
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.17 E-value=0.011 Score=64.87 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=21.8
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHh-hhhHHHHHHHHHHHHHHHHHhhcC
Q 007087 343 EERRFLQGEMQQLRDRLAITERT-AKSEAQLKEKYHLRLKVLEESLRG 389 (618)
Q Consensus 343 EErRflQGEmqrLrdKLAiaERt-AkaEaQLKeK~klRLk~lEe~Lk~ 389 (618)
+.-.||.+..+-|...+...+.. ......+++.|..+..++.....+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~ 1040 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQ 1040 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444432 223344455554444444444433
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.12 E-value=0.027 Score=62.06 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=10.6
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKAL 99 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaL 99 (618)
++..|+.++.....++.++..++..+
T Consensus 671 ~~~~l~~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 671 SILERRREIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.08 E-value=0.034 Score=61.79 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELA 311 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELA 311 (618)
+..+++++.+++.+...+..++.
T Consensus 898 ~~~l~~~~~~l~~~~~~~~~~~~ 920 (1164)
T TIGR02169 898 LRELERKIEELEAQIEKKRKRLS 920 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=97.89 E-value=0.061 Score=59.63 Aligned_cols=116 Identities=22% Similarity=0.296 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh--hhhhhhhh------cc---c----cc
Q 007087 266 EKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTA--NRVATVVA------NE---W----KD 330 (618)
Q Consensus 266 EKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~A--NRVA~vvA------nE---W----KD 330 (618)
+.|...+.++++.|... -..+.+|...+.++.+++..|..++...+... ++-+...+ +. | ++
T Consensus 387 ~~l~~el~el~~~l~~~---~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~ 463 (880)
T PRK02224 387 EELEEEIEELRERFGDA---PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEG 463 (880)
T ss_pred HHHHHHHHHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCC
Confidence 33444444444444321 13567777777777777777666655444322 22221111 11 1 11
Q ss_pred CCC-Ccc-----chhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHH
Q 007087 331 AND-KVM-----PVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEE 385 (618)
Q Consensus 331 ~nd-kVm-----PVKqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLKeK~klRLk~lEe 385 (618)
+.- .++ -++.+.++.-=+..++..++.++...+...+...++. .|+.+++.+++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~ 523 (880)
T PRK02224 464 SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEE 523 (880)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 110 111 1233333444455666666666655555555455554 45555555555
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.80 E-value=0.054 Score=59.91 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 007087 180 PLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHR 259 (618)
Q Consensus 180 pLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hR 259 (618)
.|..++.-++..|..|.+|+..|..-.+.+|..+..... +..++.....+|+.++..|..+-+-......
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~----------~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~ 279 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKE----------LKAELEQLEAELKQRLKETVVQLKQEETQAQ 279 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345555556666777777777665555444444443321 2346666677777888877776664444445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhch
Q 007087 260 QKVAEVEKLTQTVRELEEAVLAGG 283 (618)
Q Consensus 260 QKvaEVEKLsqTv~ELEEavLAgg 283 (618)
+...|++.|...++-+++-+.|+-
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSq 303 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQ 303 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999998888774
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.78 E-value=0.11 Score=57.92 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 007087 517 LQKEVVAL 524 (618)
Q Consensus 517 LQKEVi~L 524 (618)
|+.++-.|
T Consensus 679 l~~~l~~l 686 (1164)
T TIGR02169 679 LRERLEGL 686 (1164)
T ss_pred HHHHHHHH
Confidence 33333333
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=97.76 E-value=0.11 Score=57.59 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=33.1
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAE 128 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE 128 (618)
+.-.+..|+..+++...++.....++..+...-..-...+..+..++..+...+..++
T Consensus 347 ~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~ 404 (880)
T PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3444555555555555555555555555555555555666666666666655554333
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=97.64 E-value=0.16 Score=56.03 Aligned_cols=21 Identities=5% Similarity=0.241 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHHHHHhHHh
Q 007087 345 RRFLQGEMQQLRDRLAITERT 365 (618)
Q Consensus 345 rRflQGEmqrLrdKLAiaERt 365 (618)
.-=++.++..|+.++...+..
T Consensus 461 i~~l~~~~~~l~~~~~~l~~~ 481 (880)
T PRK03918 461 LKRIEKELKEIEEKERKLRKE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333555666666555554443
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.27 Score=58.08 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHH--------HHHH-----HHHHHHHHhhhcc----CCC
Q 007087 108 KAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMA--------AQFA-----AEATLRRVHAAQK----DDD 170 (618)
Q Consensus 108 KAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alA--------AQfA-----AEAtLRRvHa~QK----Ddd 170 (618)
+-+.++.+++..+...+...+..|+.....+.++..+...+-+ .++. .+..|..+-+.+. +..
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s 823 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT 823 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 4455566666666666666666666655666665555543300 0111 1112222222111 223
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHH
Q 007087 171 MPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEE 250 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEE 250 (618)
+--|+..|..++.+|...+.++..+++....+..-+..=...+.+....--..-..-....+++.+..+|..+|+.|.++
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788888888888888777778777777665554433333333222111112235577777788888877777766
Q ss_pred hHHH
Q 007087 251 NKIL 254 (618)
Q Consensus 251 nkiL 254 (618)
-+-+
T Consensus 904 ~~~~ 907 (1311)
T TIGR00606 904 IKDA 907 (1311)
T ss_pred HHHH
Confidence 5544
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.46 E-value=0.13 Score=53.75 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELAR 312 (618)
+.....+..++..++..+++|..+
T Consensus 381 l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 381 LAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666676666666654
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.39 E-value=0.15 Score=59.49 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=51.3
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHhc----hhhHHHHHHHHHHHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE-------LEEAVLAG----GAAANAVRDYQRKVQE 298 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E-------LEEavLAg----gAaANAVRdyqrq~~e 298 (618)
+.+++|+...|.+||+...++..-|...-..-..++..+...+.+ +...|-.- ......+.+..+.+..
T Consensus 392 ~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 471 (1163)
T COG1196 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888777766655543333222333333322222 11111111 1122233444444444
Q ss_pred HHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHh
Q 007087 299 MNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEER 345 (618)
Q Consensus 299 LneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEEr 345 (618)
+++....+..+|-.+..-.++..+..-. .+.|-+|..|+...
T Consensus 472 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~ 513 (1163)
T COG1196 472 LQEELQRLEKELSSLEARLDRLEAEQRA-----SQGVRAVLEALESG 513 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHhcc
Confidence 5555555555554444333333222111 55666777776554
No 14
>PRK11637 AmiB activator; Provisional
Probab=97.33 E-value=0.27 Score=51.19 Aligned_cols=199 Identities=16% Similarity=0.242 Sum_probs=100.7
Q ss_pred CCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhH---
Q 007087 68 SDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDE--- 144 (618)
Q Consensus 68 sdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndE--- 144 (618)
.+.+.-+|..++.++.....++...+.+++.+...-..-++.|..+..++..+...+..++..+...+-+|+.+..+
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888777777777777666666666666666666666666666666666666666666665543
Q ss_pred HHHhHHHHHHHHHH------HHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHH
Q 007087 145 KRASMAAQFAAEAT------LRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAER 218 (618)
Q Consensus 145 KK~alAAQfAAEAt------LRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR 218 (618)
.+..|..+..+-.. |.=+-.+...+++..+-.++.-+- ..-+.-|..++++.+.|....+.-+..+.+.+.
T Consensus 122 ~~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~---~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~ 198 (428)
T PRK11637 122 QERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLN---QARQETIAELKQTREELAAQKAELEEKQSQQKT 198 (428)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555544433 222333333222222222222111 111223445555555554443333333333332
Q ss_pred HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007087 219 TVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV 279 (618)
Q Consensus 219 ~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEav 279 (618)
...+++.+..+|..+...-+.+-.=|++-....-.++..|.+....|+..|
T Consensus 199 ----------~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 199 ----------LLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSI 249 (428)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444444444444444444444443333333444455554444444433
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.30 E-value=0.47 Score=59.01 Aligned_cols=285 Identities=23% Similarity=0.369 Sum_probs=163.0
Q ss_pred CCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh----HHHhh---hhhhhhhh
Q 007087 68 SDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLA----ENLIE---TKNLEIKK 140 (618)
Q Consensus 68 sdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~t----E~lle---~knLEiKk 140 (618)
.|...-+++.|+-++++-...+.+...++.+.|.+..-=+|+..+|..+|..+.+.|.-. ..+++ ..-.|+.+
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~ 1164 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQK 1164 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666667766666777777777777666665444 22222 12234444
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHhhhccCC------CC----ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHH
Q 007087 141 INDEKRASMAAQFAAEATLRRVHAAQKDD------DM----PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKE 210 (618)
Q Consensus 141 lndEKK~alAAQfAAEAtLRRvHa~QKDd------dm----ppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKE 210 (618)
++-.-..+.-.+-+--++||.-|+-.-.+ +. --++-.=.-|+.++.-...++..+.-+..-+++..+.=|
T Consensus 1165 l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E 1244 (1930)
T KOG0161|consen 1165 LRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE 1244 (1930)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 44433334444444555677655422111 00 123333445555555556666666666666777777667
Q ss_pred HHHHHHHHHHHHHHH----HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhH
Q 007087 211 AALLEAERTVQVALA----KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAA 286 (618)
Q Consensus 211 aALleaeR~v~~Ala----kA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaA 286 (618)
+-|.+++..+..--. .+...--++|.+.+|.+|++...-..-.+-+.......+++-+ =++|++---+-.+.+
T Consensus 1245 ~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle~e~r~k~~l~ 1321 (1930)
T KOG0161|consen 1245 AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLEEETREKSALE 1321 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 777776655543322 2344566888899999998876655555555555555555555 234555555667889
Q ss_pred HHHHHHHHHHHHHHHH-------HhhHHHHHhhhhhhhhhhhhhhhcccccC--CCCccchhhHHHHhhhhHHHHHHHHH
Q 007087 287 NAVRDYQRKVQEMNEE-------RKTLDRELARAKVTANRVATVVANEWKDA--NDKVMPVKQWLEERRFLQGEMQQLRD 357 (618)
Q Consensus 287 NAVRdyqrq~~eLneE-------k~tLerELARaKv~ANRVA~vvAnEWKD~--ndkVmPVKqWLEErRflQGEmqrLrd 357 (618)
++++-++..|..|.+. +.-|.++|.++.+- +..|+-- ++..-....--|+++-++-.+|.+.+
T Consensus 1322 ~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e--------~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe 1393 (1930)
T KOG0161|consen 1322 NALRQLEHELDLLREQLEEEQEAKNELERKLSKANAE--------LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEE 1393 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999998888766554 34566666544332 4567433 22222233444556666666666666
Q ss_pred HHHHhH
Q 007087 358 RLAITE 363 (618)
Q Consensus 358 KLAiaE 363 (618)
.+-.+.
T Consensus 1394 ~~e~~~ 1399 (1930)
T KOG0161|consen 1394 QIEAAN 1399 (1930)
T ss_pred HHHHHH
Confidence 554443
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.24 E-value=1.1 Score=56.10 Aligned_cols=207 Identities=25% Similarity=0.297 Sum_probs=126.2
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHH
Q 007087 79 ENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEAT 158 (618)
Q Consensus 79 eN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAt 158 (618)
|-...+..++.-.++.||-.|+-...-.+..+.++..|..-.+.+++.++..+.+..--+.||+-|||. +...
T Consensus 921 ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~-lEe~------ 993 (1930)
T KOG0161|consen 921 EEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKE-LEER------ 993 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------
Confidence 333445566677778899999988888899999999999999999999999999988899999999994 4332
Q ss_pred HHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHH---HHHHHHHHHhhhhHHhhh
Q 007087 159 LRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAE---RTVQVALAKASMVDDLQN 235 (618)
Q Consensus 159 LRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleae---R~v~~AlakA~~V~dlQN 235 (618)
+|. +...|+-.|..++.....+.+|..+..-|+..+........+.+ |.+...+ .++|.
T Consensus 994 ~~~------------l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el------~~~~e 1055 (1930)
T KOG0161|consen 994 IRE------------LQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL------KDLQE 1055 (1930)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhh
Confidence 222 22334555555565666666666666666666666666656555 2222222 23334
Q ss_pred hhHHHHHHHHHHHHHhH--------------HHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Q 007087 236 KNQELMKQIEICQEENK--------------ILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNE 301 (618)
Q Consensus 236 kN~EL~kQiEIcqEEnk--------------iLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLne 301 (618)
.+.+++.|++..+.+.+ =+...-.|.--.|..|+..|.+|+|-+.+.- |+.--+.++.++|..
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er---~~r~K~ek~r~dL~~ 1132 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER---ASRAKAERQRRDLSE 1132 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44444444443333322 2222223344446666666777777666553 333344555555555
Q ss_pred HHhhHHHHHhhh
Q 007087 302 ERKTLDRELARA 313 (618)
Q Consensus 302 Ek~tLerELARa 313 (618)
|..-|..+|.-+
T Consensus 1133 ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1133 ELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 555555555433
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.20 E-value=0.51 Score=55.29 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHH-HHhHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 007087 345 RRFLQGEMQQLRDRL-AITERTAKSEAQLKEKYHLRLKVLEESLR 388 (618)
Q Consensus 345 rRflQGEmqrLrdKL-AiaERtAkaEaQLKeK~klRLk~lEe~Lk 388 (618)
..+|..+++.|...+ .+-+...+.....++.|.-=+..+-+.|.
T Consensus 979 ~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~ 1023 (1163)
T COG1196 979 YEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFS 1023 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554332 23334444444444444444444444433
No 18
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.16 E-value=0.14 Score=60.35 Aligned_cols=203 Identities=24% Similarity=0.306 Sum_probs=115.9
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHH----
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRA---- 147 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~---- 147 (618)
..|+.+|++++.+-.+++.++...|+.++-.......=+.++...+.+..-.+.-+++--+.+-++|-+++++.+.
T Consensus 667 e~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~ 746 (1074)
T KOG0250|consen 667 EREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKK 746 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHH
Confidence 5677777777777777777777777777666666555566655555555555555555113344444444444332
Q ss_pred --------------------------hHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhc---
Q 007087 148 --------------------------SMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDD--- 198 (618)
Q Consensus 148 --------------------------alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqdd--- 198 (618)
.+-++||+.- + +.| ..-.-+.+|+.||+..-..+....+.
T Consensus 747 ~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~-~----~l~------~e~~~l~~l~~el~~r~dk~~s~e~~~~H 815 (1074)
T KOG0250|consen 747 EKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGR-E----KLQ------GEISKLDALKEELKLREDKLRSAEDEKRH 815 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHH------HHHHHhhHHHHHHHHHHHHHhhhhhhhhh
Confidence 2333333321 0 000 01112334444444333333222221
Q ss_pred ----hHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh---------------hHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 007087 199 ----NKALDRLTKSKEAALLEAERTVQVALAKASM---------------VDDLQNKNQELMKQIEICQEENKILDKMHR 259 (618)
Q Consensus 199 ----nkALerltKsKEaALleaeR~v~~AlakA~~---------------V~dlQNkN~EL~kQiEIcqEEnkiLdk~hR 259 (618)
.|...--++.||+.+...+..++....+|.+ |+++.+.+.-|+.||+-|.+-.-.+.-||+
T Consensus 816 yE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~ 895 (1074)
T KOG0250|consen 816 YEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHR 895 (1074)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 2223334567788888888888888888764 478889999999999999999999999999
Q ss_pred hHHH--HH-HHHHHHHHHHHHHHHhchhh
Q 007087 260 QKVA--EV-EKLTQTVRELEEAVLAGGAA 285 (618)
Q Consensus 260 QKva--EV-EKLsqTv~ELEEavLAggAa 285 (618)
+-.. .. .|.+.-..=|-|.|-+-|-+
T Consensus 896 ~~~~~~~~~~k~~~~k~~~~e~L~~l~~~ 924 (1074)
T KOG0250|consen 896 GLHEARKELKKEDELKVTLDELLKALGEA 924 (1074)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8332 22 22222222256666655543
No 19
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.13 E-value=0.14 Score=49.73 Aligned_cols=67 Identities=24% Similarity=0.399 Sum_probs=49.0
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
..+++|+|+|.+..++|.+...|-+.||.--.--+|||..+.+.=. -+-.++.+.+-||..|...-|
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~-------~Lpqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEA-------ELPQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999988888888865433222 222344555666666655544
No 20
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.11 E-value=0.98 Score=53.34 Aligned_cols=127 Identities=16% Similarity=0.218 Sum_probs=69.1
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHH----------HHHHHHHHHHHHHHHHHhchhhHH-HHHHHHHHHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVA----------EVEKLTQTVRELEEAVLAGGAAAN-AVRDYQRKVQ 297 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKva----------EVEKLsqTv~ELEEavLAggAaAN-AVRdyqrq~~ 297 (618)
.+.++.++...|.++|.-|.+....+..-.+=+-. +.-.|...+..++..+..-....+ ...+|+.+..
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 851 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRK 851 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776665433322111111000 122334444444444443333333 3778899999
Q ss_pred HHHHHHhhHHHHHhhhhhhhhhhhhhhh--cccccCCCCccchhhHHHHhhhhHHHHHHHHHHH
Q 007087 298 EMNEERKTLDRELARAKVTANRVATVVA--NEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRL 359 (618)
Q Consensus 298 eLneEk~tLerELARaKv~ANRVA~vvA--nEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKL 359 (618)
++++++..++..+.++...-+++..++. ++|.-. .|...+-...-.+...++++...+
T Consensus 852 ~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1201)
T PF12128_consen 852 ELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEP----PNAEDAEGSVDERLRDLEDLLQRR 911 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC----CCchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998888887655522 444322 222222223334445555555544
No 21
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.77 E-value=1.1 Score=48.65 Aligned_cols=151 Identities=27% Similarity=0.334 Sum_probs=98.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHH
Q 007087 81 EVRDKDRELGEAQAEIKALRLS----ERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE 156 (618)
Q Consensus 81 ~lr~KdrEL~~A~aEIkaLr~s----e~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAE 156 (618)
....+..+|.-++.++.-++-. +..|.+|+.||. .|-..++..++.|.+.+.+++.+..+--.+
T Consensus 28 ~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe-----------~akr~veel~~kLe~~~~~~~~a~~~~e~~- 95 (522)
T PF05701_consen 28 RVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELE-----------SAKRTVEELKLKLEKAQAEEKQAEEDSELA- 95 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-
Confidence 3444556666666666655543 445555555543 344555566666666666665433222222
Q ss_pred HHHHHHhhhccCCCCCh---------hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 007087 157 ATLRRVHAAQKDDDMPP---------IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA 227 (618)
Q Consensus 157 AtLRRvHa~QKDddmpp---------ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA 227 (618)
-+|=....|...+..+ .-...+..=++|..+++|+.+++.+. +.++-.|..|+-.|+..+..+-.-+
T Consensus 96 -k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~---~~~~~~k~~A~~~aeea~~~a~~~~ 171 (522)
T PF05701_consen 96 -KFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQEL---ASALDAKNAALKQAEEAVSAAEENE 171 (522)
T ss_pred -HHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332222233222221 23355666678999999999998774 5566789999999999999999999
Q ss_pred hhhHHhhhhhHHHHHHHHHH
Q 007087 228 SMVDDLQNKNQELMKQIEIC 247 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEIc 247 (618)
..|++|...+..|+.-|+-.
T Consensus 172 ~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887764
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.75 E-value=0.33 Score=54.99 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=98.9
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHhh----hhhhhhhhh
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKALRLS-------ERLREKAVEELTEELSKVEEKLKLAENLIE----TKNLEIKKI 141 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~s-------e~~kdKAveel~~el~kldEKLk~tE~lle----~knLEiKkl 141 (618)
..+.|||.+++....||...+.-=..||.. |+.=---|.++..+..-|.-|+--+..... ++..==|+|
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888888777776666555555554 333333455555555555555543333222 111122556
Q ss_pred hhHHH--HhHHHHHHHHHHHHHH--hhhccC---------CCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHh-
Q 007087 142 NDEKR--ASMAAQFAAEATLRRV--HAAQKD---------DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTK- 207 (618)
Q Consensus 142 ndEKK--~alAAQfAAEAtLRRv--Ha~QKD---------ddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltK- 207 (618)
.+|++ ..+.+|+++|--=|+- +++.+- +---..-.=..-||.||+..|.|+...+|.+..||.-..
T Consensus 498 ~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 498 AEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654 4566777766422221 011110 000011223345566666666666666666666655331
Q ss_pred ---h-HHHHHHHHHHHHHHHHHHhhhhHHhhhhhH--------------HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 007087 208 ---S-KEAALLEAERTVQVALAKASMVDDLQNKNQ--------------ELMKQIEICQEENKILDKMHRQKVAEVEKLT 269 (618)
Q Consensus 208 ---s-KEaALleaeR~v~~AlakA~~V~dlQNkN~--------------EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLs 269 (618)
- ||.. . .+...-+-+--+|-+|+ ||..-+-....+-.|++...|+|..||+-|.
T Consensus 578 lr~~~~e~~-~-------~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 578 LRKYEKESE-K-------DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred HHHHHhhhh-h-------hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 2200 0 01111111123344443 3333344455555666677899999999999
Q ss_pred HHHHHHH
Q 007087 270 QTVRELE 276 (618)
Q Consensus 270 qTv~ELE 276 (618)
+.|.++-
T Consensus 650 ~ki~~~~ 656 (697)
T PF09726_consen 650 AKIAQLL 656 (697)
T ss_pred HHHHHHH
Confidence 9999874
No 23
>PRK09039 hypothetical protein; Validated
Probab=96.64 E-value=0.47 Score=49.17 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=57.1
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHH
Q 007087 77 RLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE 156 (618)
Q Consensus 77 RLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAE 156 (618)
=|..++..++.||...+++|..|=....+.......+..+|..+...+..++. .|+.|.+++++-
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~---------------~r~~Le~~~~~~ 107 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA---------------ERSRLQALLAEL 107 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhh
Confidence 47888999999999999999886665666666666666666666665552222 334566666632
Q ss_pred HHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHH
Q 007087 157 ATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQE 191 (618)
Q Consensus 157 AtLRRvHa~QKDddmppieaiiApLeAelk~~r~E 191 (618)
.++.-|.+..++-|+++|...+.+
T Consensus 108 -----------~~~~~~~~~~~~~l~~~L~~~k~~ 131 (343)
T PRK09039 108 -----------AGAGAAAEGRAGELAQELDSEKQV 131 (343)
T ss_pred -----------hhhcchHHHHHHHHHHHHHHHHHH
Confidence 233445666666666666655543
No 24
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.64 E-value=0.082 Score=51.29 Aligned_cols=129 Identities=24% Similarity=0.341 Sum_probs=98.8
Q ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchh-hHHH---HHHHHHHHHHHH
Q 007087 225 AKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGA-AANA---VRDYQRKVQEMN 300 (618)
Q Consensus 225 akA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggA-aANA---VRdyqrq~~eLn 300 (618)
|+..-+.+|+|.+.+|...|+.|.-||++|..+.+.-...+.++..+=.+|-..|-.--. .-+- +|.|+.+..++.
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999999999999999888899988888888877753321 1111 677788888888
Q ss_pred HHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhh
Q 007087 301 EERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTA 366 (618)
Q Consensus 301 eEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtA 366 (618)
...+..+.||-+++-...+.=-.+ =...|.||-=|+.+...+..++..+++..
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~-------------~dknL~eReeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLS-------------EDKNLAEREELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887776666422111 12467788888888888888888777654
No 25
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.61 E-value=0.82 Score=50.99 Aligned_cols=82 Identities=26% Similarity=0.360 Sum_probs=47.8
Q ss_pred HhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHhH-H
Q 007087 176 AILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEICQEENK-I 253 (618)
Q Consensus 176 aiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~-~V~dlQNkN~EL~kQiEIcqEEnk-i 253 (618)
..|+-|||++...+-.|.++-|+++=|-+-.--=...|..+- ..+.... .--|+||++|+|+..|+-|...++ .
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r----~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~e 223 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR----KQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQE 223 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 456667777777777777777776544322221122222222 2222222 226899999999999999987776 4
Q ss_pred HHHHhhhH
Q 007087 254 LDKMHRQK 261 (618)
Q Consensus 254 Ldk~hRQK 261 (618)
+.-.++..
T Consensus 224 I~e~~~~~ 231 (546)
T KOG0977|consen 224 IEEERRKA 231 (546)
T ss_pred HHHHHHHH
Confidence 44444443
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.61 E-value=2.9 Score=51.25 Aligned_cols=217 Identities=19% Similarity=0.220 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHH
Q 007087 110 VEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLAR 189 (618)
Q Consensus 110 veel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r 189 (618)
..+....|.+.+.++.-++..++..+-.+++|..++..+..-+-..+ ++..+.
T Consensus 295 k~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e---------------------------e~lr~q 347 (1486)
T PRK04863 295 LYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ---------------------------TALRQQ 347 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHH
Confidence 34455566666777777777777777777777666664433322211 122223
Q ss_pred HHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 007087 190 QEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLT 269 (618)
Q Consensus 190 ~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLs 269 (618)
.++..++++...|...+..-+..+.+++..+....+. +..++.+..+|..++..++.+-. +--.++..+.
T Consensus 348 ~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeE---leelEeeLeeLqeqLaelqqel~-------elQ~el~q~q 417 (1486)
T PRK04863 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEAR---AEAAEEEVDELKSQLADYQQALD-------VQQTRAIQYQ 417 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3444555555555544444444444443333222211 12233333333333333332222 2233445556
Q ss_pred HHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccc-----
Q 007087 270 QTVRELEEAVLAGGAA-------ANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMP----- 337 (618)
Q Consensus 270 qTv~ELEEavLAggAa-------ANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmP----- 337 (618)
+.+..|+.|=.-.|.+ -+-+..|..+++++..+...++.+|..++.......... +.---..++|-|
T Consensus 418 q~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~-~~l~~~~Gkv~~~~a~~ 496 (1486)
T PRK04863 418 QAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAY-QLVRKIAGEVSRSEAWD 496 (1486)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCcCHHHHHH
Confidence 6666666655444421 244777888888888888888887776665544322220 000001112222
Q ss_pred ----hhhHHHHhhhhHHHHHHHHHHHHHhHH
Q 007087 338 ----VKQWLEERRFLQGEMQQLRDRLAITER 364 (618)
Q Consensus 338 ----VKqWLEErRflQGEmqrLrdKLAiaER 364 (618)
+-+.+.+-|.+.+-.++|+.+|+-+|+
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (1486)
T PRK04863 497 VARELLRRLREQRHLAEQLQQLRMRLSELEQ 527 (1486)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 223345566788888999999988888
No 27
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.57 E-value=2 Score=48.80 Aligned_cols=315 Identities=21% Similarity=0.261 Sum_probs=175.2
Q ss_pred CChhHHhhh----cCCCchhHh------hhhhhH---HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007087 57 ADNEFMTLL----HGSDPVKVE------LNRLEN---EVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEK 123 (618)
Q Consensus 57 ~~~~~~~~~----hgsdPv~~E------lnRLeN---~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEK 123 (618)
+.+.||+.+ ..|||+-+= ++++++ +.++.-.+|.+-..|+..+|..+..=....+.+++....++++
T Consensus 85 aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ 164 (629)
T KOG0963|consen 85 AEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIF 164 (629)
T ss_pred hHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 456777643 569998763 334444 4555666777777777777777777677777777777777777
Q ss_pred HH----HhHHHhhhhhhhhh-hhhhHHHHhHHHHH-HHHHHHHHHhhhccCCCCCh--hHHh----hhccHHHHHHHHHH
Q 007087 124 LK----LAENLIETKNLEIK-KINDEKRASMAAQF-AAEATLRRVHAAQKDDDMPP--IEAI----LAPLEAELKLARQE 191 (618)
Q Consensus 124 Lk----~tE~lle~knLEiK-klndEKK~alAAQf-AAEAtLRRvHa~QKDddmpp--ieai----iApLeAelk~~r~E 191 (618)
.+ .|+..+++-..|.- .|.++.- .++.|. .++.+.+-.|++++|-+--- +.+- .+-.-+++-++=.+
T Consensus 165 ie~~a~~~e~~~~q~~~e~e~~L~~~~~-~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~e 243 (629)
T KOG0963|consen 165 IENAANETEEKLEQEWAEREAGLKDEEQ-NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTE 243 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 77 77777776555543 3444444 677765 67788888877777654211 1222 34444555555555
Q ss_pred HHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Q 007087 192 IAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQT 271 (618)
Q Consensus 192 i~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqT 271 (618)
.+..|--+..|++=.-...-.+-.+- .-+++. +|+-..--+-.| =||..||.+|+..
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N------------------~~~~~~-~~~~i~~~~~~L----~~kd~~i~~L~~d 300 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKAN------------------SSKKLA-KIDDIDALGSVL----NQKDSEIAQLSND 300 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------------------hhhhhc-cCCchHHHHHHH----hHHHHHHHHHHHH
Confidence 54444444444432222221111111 111111 111111112222 2378888888888
Q ss_pred HHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh---hhhhhhh---------hhcccccCCCCccch
Q 007087 272 VRELEEAVLA-GGAAANAVRDYQRKVQEMNEERKTLDRELARAKVT---ANRVATV---------VANEWKDANDKVMPV 338 (618)
Q Consensus 272 v~ELEEavLA-ggAaANAVRdyqrq~~eLneEk~tLerELARaKv~---ANRVA~v---------vAnEWKD~ndkVmPV 338 (618)
|.-++.+.-- -..-+++|-+-.++......++.+|.+.|---.-| =+-+-.. -|+-|- ++++.|-.
T Consensus 301 i~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~-~~~~~les 379 (629)
T KOG0963|consen 301 IERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDED-ETAKTLES 379 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccc-cccchHHH
Confidence 8888877653 35666778888888888888888777776321100 0111111 223332 22233332
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHhH-Hhhh-----hHHHHHHHHHHHH-HHHHHhhcCCCCCCCCC
Q 007087 339 KQWLEERRFLQGEMQQLRDRLAITE-RTAK-----SEAQLKEKYHLRL-KVLEESLRGSSNGSGRS 397 (618)
Q Consensus 339 KqWLEErRflQGEmqrLrdKLAiaE-RtAk-----aEaQLKeK~klRL-k~lEe~Lk~~~~~~~~~ 397 (618)
.-|+-=|+||.|.-.||-...... |-.+ .+..-++--+.|+ --||.+|....+.++..
T Consensus 380 -lLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~ 444 (629)
T KOG0963|consen 380 -LLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAE 444 (629)
T ss_pred -HHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCC
Confidence 456777899999999986554321 1111 1223344455566 66888888776544443
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.53 E-value=2.2 Score=51.69 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc-hhhHHH---HHHHHHHHHHHH
Q 007087 259 RQKVAEVEKLTQTVRELEEAVLAG-GAAANA---VRDYQRKVQEMN 300 (618)
Q Consensus 259 RQKvaEVEKLsqTv~ELEEavLAg-gAaANA---VRdyqrq~~eLn 300 (618)
+|-+.-+.-..|++.+.+|...+. +.+.|| +.+....+++|.
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555554444 223333 444444444443
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.51 E-value=2.7 Score=49.78 Aligned_cols=138 Identities=19% Similarity=0.265 Sum_probs=66.0
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh--
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN-- 251 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEn-- 251 (618)
|+.+++.+ ..+-.++.+...++....+|..-...=++........+..++.. ....++++..++..++...++.+
T Consensus 344 i~~~~~~~-~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~~~ 420 (1201)
T PF12128_consen 344 IEQLIARV-DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR--QQERLQAQQDEIREEKAERREQIEE 420 (1201)
T ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544 33556777777777777777766665555555555555554432 33444444333333333322221
Q ss_pred --H-HHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 252 --K-ILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 252 --k-iLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
. +.+....+....++.+.+....+... -+..+.-.++-....++.++..+++.++..+.-..+
T Consensus 421 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~ 486 (1201)
T PF12128_consen 421 EYQALEQELRQQSQEQLEELQEQREQLKSE----LAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQN 486 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22222222222333333332222221 223344444444556666777777766665544443
No 30
>PRK03918 chromosome segregation protein; Provisional
Probab=96.50 E-value=1.9 Score=47.87 Aligned_cols=26 Identities=12% Similarity=0.437 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELARAK 314 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELARaK 314 (618)
+..|+.++.+++.+...|..++....
T Consensus 454 ~~~~~~ei~~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 454 LEEYTAELKRIEKELKEIEEKERKLR 479 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888777777777665444
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.42 E-value=2.5 Score=50.45 Aligned_cols=67 Identities=28% Similarity=0.453 Sum_probs=59.9
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhH
Q 007087 78 LENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDE 144 (618)
Q Consensus 78 LeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndE 144 (618)
+.+++++..+|+..-+.||..|......=++.++++...++.+++....++..+.-+..||--|.+.
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~ 725 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT 725 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567788888888888899999999999999999999999999999999999999999998888775
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.19 E-value=4.2 Score=48.56 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=23.1
Q ss_pred ccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 007087 327 EWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 367 (618)
Q Consensus 327 EWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAk 367 (618)
.| +.+ ..+.+|+. =++.++..++++.+.+++...
T Consensus 568 ~~-~~~---~~l~~~~~---~~~~el~~~~~~~~~~~~el~ 601 (1311)
T TIGR00606 568 YF-PNK---KQLEDWLH---SKSKEINQTRDRLAKLNKELA 601 (1311)
T ss_pred CC-CCc---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 77 432 44555554 367888888888888887764
No 33
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.16 E-value=2.6 Score=45.96 Aligned_cols=207 Identities=23% Similarity=0.278 Sum_probs=127.9
Q ss_pred chhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhH
Q 007087 70 PVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASM 149 (618)
Q Consensus 70 Pv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~al 149 (618)
.+...|..+..+|.+--.+|..+..|+..|+.+...=..=|+....++..+.++.......+.+.+-++.++..+ |
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e----L 353 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE----L 353 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH----H
Confidence 344558888899999999999999999999998886666778889999999999999988888888887766543 3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 007087 150 AAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASM 229 (618)
Q Consensus 150 AAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~ 229 (618)
.+-.+++. .-.+.|.-+...|--+-.|...++.+....+....-+-.=+..=.+++..++..++.|+.-.--
T Consensus 354 ea~~~~e~--------~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 354 EAAKAEEE--------KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHhhhc--------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333331 1233455666666667777666666665555555555444444445555555555555443333
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILD----KMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA 288 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLd----k~hRQKvaEVEKLsqTv~ELEEavLAggAaANA 288 (618)
+..-.-.-..-++.+..+.......+ ..-...+-|-+-|+..+++.|+.+.--=++|.+
T Consensus 426 aKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~a 488 (522)
T PF05701_consen 426 AKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMA 488 (522)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222222222322222222211 001235578888999999998876655455544
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.06 E-value=1.7 Score=42.85 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHhhhchH-HHHHHHhhHHHHH
Q 007087 181 LEAELKLARQEIAKLQDDNK-ALDRLTKSKEAAL 213 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnk-ALerltKsKEaAL 213 (618)
|.+-|+-.|.+....-+.++ -++...+.|=..+
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l 200 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEEL 200 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccc
Confidence 44445555544443333333 4555555554433
No 35
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.05 E-value=4.1 Score=47.19 Aligned_cols=259 Identities=25% Similarity=0.338 Sum_probs=144.5
Q ss_pred CCchhHhhhhhhHHHhhhhHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 68 SDPVKVELNRLENEVRDKDRELGEAQAEIK--------------ALRLSERLREKAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 68 sdPv~~ElnRLeN~lr~KdrEL~~A~aEIk--------------aLr~se~~kdKAveel~~el~kldEKLk~tE~lle~ 133 (618)
+...+--+.++.-+|..|+-||..++++.. .|+.+-+.|+.=-+-|.-++.-|--+|.--+..++.
T Consensus 282 ~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~k 361 (775)
T PF10174_consen 282 SLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEK 361 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444455666666666666655555544 444555555555555555555555555555555555
Q ss_pred hhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHH
Q 007087 134 KNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAAL 213 (618)
Q Consensus 134 knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaAL 213 (618)
+-.-|-+++.||- .+.+| |.-|--.+.....+|..||..+..|+..++-|+.-|
T Consensus 362 k~~~~~~~qeE~~-----~~~~E---------------------i~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 362 KQAQIEKLQEEKS-----RLQGE---------------------IEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQL 415 (775)
T ss_pred HHHHHHHHHHHHH-----HHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555542 22333 223445566777899999999999999999999999
Q ss_pred HHHHHHHH------------HHHHHhhhh-HHhhhhhHHHHHHHHH-HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007087 214 LEAERTVQ------------VALAKASMV-DDLQNKNQELMKQIEI-CQEENKILDKMHRQKVAEVEKLTQTVRELEEAV 279 (618)
Q Consensus 214 leaeR~v~------------~AlakA~~V-~dlQNkN~EL~kQiEI-cqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEav 279 (618)
.++...+. .-|+.|.+= +-++..+.++...-+. .+++..-+.+-..+--.+|+.|...+.|.+-.+
T Consensus 416 ~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l 495 (775)
T PF10174_consen 416 DEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQL 495 (775)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88887777 333333322 2233332222211111 112222222222233345666666666655444
Q ss_pred Hh-----chhhHHHHHHH------HHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCcc----chhhHHHH
Q 007087 280 LA-----GGAAANAVRDY------QRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVM----PVKQWLEE 344 (618)
Q Consensus 280 LA-----ggAaANAVRdy------qrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVm----PVKqWLEE 344 (618)
+. +..++|.++.+ +=.+...+++...|+.+|-.++ +| .+..+ .+- -|...-++
T Consensus 496 ~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~--~~-------~e~~~---r~~~Le~ev~~~~ee 563 (775)
T PF10174_consen 496 EDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR--AN-------AELRD---RIQQLEQEVTRYREE 563 (775)
T ss_pred HHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH--hC-------Hhhcc---hHHHHHHHHHHHHHH
Confidence 42 23455555544 3344566777788888886621 11 11111 221 24556677
Q ss_pred hhhhHHHHHHHHHHHHHhHH
Q 007087 345 RRFLQGEMQQLRDRLAITER 364 (618)
Q Consensus 345 rRflQGEmqrLrdKLAiaER 364 (618)
..=-|+|+.||.+-|-.+|-
T Consensus 564 ~~kaq~EVERLl~~L~~~E~ 583 (775)
T PF10174_consen 564 SEKAQAEVERLLDILREAEN 583 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77789999999998865553
No 36
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.99 E-value=6.8 Score=49.19 Aligned_cols=69 Identities=33% Similarity=0.486 Sum_probs=44.8
Q ss_pred chhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHH-HHH--------------HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 007087 70 PVKVELNRLENEVRDKDRELGEAQAEIKALRLSER-LRE--------------KAVEELTEELSKVEEKLKLAENLIETK 134 (618)
Q Consensus 70 Pv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~-~kd--------------KAveel~~el~kldEKLk~tE~lle~k 134 (618)
-+..++..|||.+....-+++...+|++-|+...- -|- .-++.|..+...|+++|...|++.+..
T Consensus 1254 kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el 1333 (1822)
T KOG4674|consen 1254 KLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAEL 1333 (1822)
T ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999998875432 111 123445556666666666555554443
Q ss_pred hhhh
Q 007087 135 NLEI 138 (618)
Q Consensus 135 nLEi 138 (618)
+-++
T Consensus 1334 ~~~~ 1337 (1822)
T KOG4674|consen 1334 KKEL 1337 (1822)
T ss_pred HHHH
Confidence 3333
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.96 E-value=4.5 Score=46.90 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 007087 210 EAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 210 EaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E 274 (618)
|.+=.+..++-..-++..+-.+++.|++.++...|+-++++..-.+.=.=.=.++|+.|...+.+
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~ 354 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE 354 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45556677777777788888999999999999999998887654433332334555555544443
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.96 E-value=1.7 Score=49.44 Aligned_cols=182 Identities=24% Similarity=0.329 Sum_probs=113.7
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHH-----H
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEI-----C 247 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~-~V~dlQNkN~EL~kQiEI-----c 247 (618)
-...+.-||+|||..|.|+... |.+|.=++++-.-|...||.++..|.-.. -.|+|||++++|.++.+- -
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~----Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~ 491 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSS----RQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQ 491 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446668999999999998764 77888888888888889999998886544 469999999999987654 3
Q ss_pred HHHhHH-HHHHhhhHHHHHHHHHHHHH--HHHHHHHhc--hhhHHHHH-----HHHHHHHHHHHHHhhHHHHHhhhhhhh
Q 007087 248 QEENKI-LDKMHRQKVAEVEKLTQTVR--ELEEAVLAG--GAAANAVR-----DYQRKVQEMNEERKTLDRELARAKVTA 317 (618)
Q Consensus 248 qEEnki-Ldk~hRQKvaEVEKLsqTv~--ELEEavLAg--gAaANAVR-----dyqrq~~eLneEk~tLerELARaKv~A 317 (618)
+=|.++ -+..+|+ ++|+-=+.-+ ..+|..-|. .|.+.+-| -.+.+.++|+.|.+.|.+|| |..=
T Consensus 492 ~LEkrL~eE~~~R~---~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el---k~ke 565 (697)
T PF09726_consen 492 QLEKRLAEERRQRA---SLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL---KQKE 565 (697)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 344442 2233333 3333222222 122222222 12222211 14567799999999999999 4444
Q ss_pred hhhhhhhhcccccCCCCccchhhH-H---HHhhhhHHHHHHHHHHHHHhHHhhhhHHHHH
Q 007087 318 NRVATVVANEWKDANDKVMPVKQW-L---EERRFLQGEMQQLRDRLAITERTAKSEAQLK 373 (618)
Q Consensus 318 NRVA~vvAnEWKD~ndkVmPVKqW-L---EErRflQGEmqrLrdKLAiaERtAkaEaQLK 373 (618)
.++.....--+ -+... - .+--.|-..++-++||=+..|.+..+|--||
T Consensus 566 e~~~~~e~~~~--------~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 566 EQIRELESELQ--------ELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred HHHHHHHHHHH--------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44333221110 00000 1 1344566677789999999999999998877
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.94 E-value=0.52 Score=52.46 Aligned_cols=79 Identities=27% Similarity=0.273 Sum_probs=49.3
Q ss_pred CchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHhhhhhhhhhhh
Q 007087 69 DPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEK-------LKLAENLIETKNLEIKKI 141 (618)
Q Consensus 69 dPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEK-------Lk~tE~lle~knLEiKkl 141 (618)
+-+-.|+..+-..|.+-.++...++.||+.|+....-=.+=+++...++.-..++ |.-.|..+..-+-.|+++
T Consensus 88 ~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 88 AKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 3456799999999999999888888888887765443333333333333333333 334444444445556667
Q ss_pred hhHHHH
Q 007087 142 NDEKRA 147 (618)
Q Consensus 142 ndEKK~ 147 (618)
.+|++.
T Consensus 168 e~e~~~ 173 (546)
T KOG0977|consen 168 EDELKR 173 (546)
T ss_pred HHHHHH
Confidence 777663
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.82 E-value=7.2 Score=48.97 Aligned_cols=232 Identities=24% Similarity=0.268 Sum_probs=153.5
Q ss_pred CchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHh
Q 007087 69 DPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRAS 148 (618)
Q Consensus 69 dPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~a 148 (618)
+-.+.|++-|-|+|.....+......+|-++....-.=-+|-.++.++-+-+-+=+.-....|+-++-+++.++++=+.+
T Consensus 76 ~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss 155 (1822)
T KOG4674|consen 76 KLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSS 155 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677766666667777776666544443444555555545555555555556666677777777777766
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 007087 149 MAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS 228 (618)
Q Consensus 149 lAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~ 228 (618)
-.+-.=.++++-...+. - ..++..+..--+|-..|+-+|.-|++=+..+=..|+..+|. ...
T Consensus 156 ~~~~~e~e~r~~e~~s~-----------~-vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re------~s~ 217 (1822)
T KOG4674|consen 156 TKTLSELEARLQETQSE-----------D-VSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRRE------HSI 217 (1822)
T ss_pred HHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh------hhh
Confidence 66666667766663332 1 23777888888899999999999999999999999988864 345
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHHHHHHHHHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQ-------KVAEVEKLTQTVRELEEAVLAGGAAANA-VRDYQRKVQEMN 300 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQ-------KvaEVEKLsqTv~ELEEavLAggAaANA-VRdyqrq~~eLn 300 (618)
-|.+|++++.++..+...||+-|+.|..-++. ++.+|-++.+|....++-..+---+.+. +--|..++.++.
T Consensus 218 ~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~ 297 (1822)
T KOG4674|consen 218 EVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELS 297 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998877443332 3566666777766665555554333333 445666666666
Q ss_pred HHHhhHHHHHhhhhhhhh
Q 007087 301 EERKTLDRELARAKVTAN 318 (618)
Q Consensus 301 eEk~tLerELARaKv~AN 318 (618)
.+..-|.+.+--.++..+
T Consensus 298 ~~~~el~~~i~~~~klle 315 (1822)
T KOG4674|consen 298 HEVAELQRAIEELEKLLE 315 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666655555544444443
No 41
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.75 E-value=6.9 Score=47.37 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHH
Q 007087 101 LSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEK 145 (618)
Q Consensus 101 ~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEK 145 (618)
.-++.|.+-|.+|..++..+++.+...+..+....-.+..|..|.
T Consensus 735 aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777778888888888888777777766665544444444443
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.58 E-value=8.7 Score=47.37 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=84.8
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhchhh-HHHHHHH---HHHHHH
Q 007087 226 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ---KVAEVEKLTQTVRELEEAVLAGGAA-ANAVRDY---QRKVQE 298 (618)
Q Consensus 226 kA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQ---KvaEVEKLsqTv~ELEEavLAggAa-ANAVRdy---qrq~~e 298 (618)
.|.-+.-++++..+|.+.++.-|.-..+|+..+.+ -+.-.+-|.+...++|..+..-+.. +.++-.| +.+.++
T Consensus 511 ~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~q 590 (1486)
T PRK04863 511 LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590 (1486)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888888777777777777666541 1111344445555566555543322 2221111 222233
Q ss_pred HHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccc----hhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHH
Q 007087 299 MNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMP----VKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKE 374 (618)
Q Consensus 299 LneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmP----VKqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLKe 374 (618)
|......|+ . .|.+|--.++.+.- .-.|++-+.-+-.-||++-++. |.+ .+-++
T Consensus 591 L~~~i~~l~----------~-----~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~----~~~---~~~~~ 648 (1486)
T PRK04863 591 LQARIQRLA----------A-----RAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERE----REL---TVERD 648 (1486)
T ss_pred HHHHHHHHH----------H-----hChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHH----HHH---HHHHH
Confidence 333222221 1 25678766666552 3368888888888899888765 322 34467
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 007087 375 KYHLRLKVLEESLRGSSN 392 (618)
Q Consensus 375 K~klRLk~lEe~Lk~~~~ 392 (618)
+++.+...|++-+...++
T Consensus 649 ~~~~~~~~L~~~i~~l~~ 666 (1486)
T PRK04863 649 ELAARKQALDEEIERLSQ 666 (1486)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 888999999998887654
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.44 E-value=3.5 Score=41.92 Aligned_cols=139 Identities=24% Similarity=0.345 Sum_probs=79.1
Q ss_pred chhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhH
Q 007087 70 PVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASM 149 (618)
Q Consensus 70 Pv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~al 149 (618)
-+-.++.||+-..+..-..|..+++|+.+++-.-..++.+++.+.+++..+...+..+...++.--.-++.+++++.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e--- 90 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERE--- 90 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH---
Confidence 56678889998888888899999999888876666666666655555544443333333332222222222333322
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007087 150 AAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALA 225 (618)
Q Consensus 150 AAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Ala 225 (618)
|.|. .+.+. -..--+..|+.+|.-...++.+|++.+.+|..-+..=|.-+.+++..+..+++
T Consensus 91 ---~~aL--~~E~~---------~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~ 152 (239)
T COG1579 91 ---LRAL--NIEIQ---------IAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA 152 (239)
T ss_pred ---HHHH--HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111 12234556666666666667777766666666666666666666655555443
No 44
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=6.1 Score=44.69 Aligned_cols=226 Identities=19% Similarity=0.258 Sum_probs=132.3
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH-
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKALRLSERLRE---KAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR- 146 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kd---KAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK- 146 (618)
.-=.|++|..++.+|+-|+..-++++..|+....+.. .=|++...|..+|+.-|--+...++..-.++..++.+=.
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3446889999999999999999999999999988875 346666777788887777777777766555555554211
Q ss_pred --H---hHHHHHHHHHHHHHHhhh----ccCCCCChhH----------HhhhccHHHHHHHHHHHHHhhhchHHHHHHHh
Q 007087 147 --A---SMAAQFAAEATLRRVHAA----QKDDDMPPIE----------AILAPLEAELKLARQEIAKLQDDNKALDRLTK 207 (618)
Q Consensus 147 --~---alAAQfAAEAtLRRvHa~----QKDddmppie----------aiiApLeAelk~~r~Ei~kLqddnkALerltK 207 (618)
. .+..+|+.. +||+.-. +++-...|-. .+.-||...+..-.-++...+.++-.|+.+..
T Consensus 372 ~f~~le~~~~~~~~l--~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~ 449 (581)
T KOG0995|consen 372 FFKELEKKFIDLNSL--IRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFS 449 (581)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 334444443 3444333 5552221111 14445555555555566666666666777777
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhH
Q 007087 208 SKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAA 286 (618)
Q Consensus 208 sKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAg-gAaA 286 (618)
.+.+-+.|..+++..-.-.+.+++++- ++.|+. .++| -+---.|+|+|-..+..|...+.-+ --|.
T Consensus 450 ~~~~~i~E~~~~l~~~~~el~~~~~~~----~~~k~e--~eee-------~~k~~~E~e~le~~l~~l~l~~~~~m~~a~ 516 (581)
T KOG0995|consen 450 NKASTIEEKIQILGEIELELKKAESKY----ELKKEE--AEEE-------WKKCRKEIEKLEEELLNLKLVLNTSMKEAE 516 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766666666665532 222221 1121 1233456666666666555554433 2222
Q ss_pred HHH----HHHHHHHHHHHHHHhhHHHHHh
Q 007087 287 NAV----RDYQRKVQEMNEERKTLDRELA 311 (618)
Q Consensus 287 NAV----Rdyqrq~~eLneEk~tLerELA 311 (618)
+=| ..|++=++..++|+.-+..+|.
T Consensus 517 ~~v~s~e~el~~~~~~~~eer~ki~~ql~ 545 (581)
T KOG0995|consen 517 ELVKSIELELDRMVATGEEERQKIAKQLF 545 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2345555555666665555553
No 45
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.28 E-value=5.7 Score=43.42 Aligned_cols=101 Identities=23% Similarity=0.414 Sum_probs=50.8
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHH
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMA 150 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alA 150 (618)
+.-|+-+++..+++...++..-+++|+.|+..-..=+.++-++..++.+++.++..++..|+. |+..+ .+.+..||
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~--l~~q~--r~qr~~La 118 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA--LEVQE--REQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH--HHHHH--HHHHHHHH
Confidence 344555555555555555555555555555555444455555555555544444444443332 11111 34455666
Q ss_pred HHHHHHHHHHHHhhhccCCCCChhHHhhhccHHH
Q 007087 151 AQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAE 184 (618)
Q Consensus 151 AQfAAEAtLRRvHa~QKDddmppieaiiApLeAe 184 (618)
-|.+|- |.--.-||+-.++-|=++.
T Consensus 119 ~~L~A~---------~r~g~~p~~~ll~~~eda~ 143 (420)
T COG4942 119 EQLAAL---------QRSGRNPPPALLVSPEDAQ 143 (420)
T ss_pred HHHHHH---------HhccCCCCchhhcChhhhh
Confidence 666654 3333346666677775553
No 46
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.13 E-value=11 Score=45.77 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhch
Q 007087 121 EEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDN 199 (618)
Q Consensus 121 dEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddn 199 (618)
...+...+..+....-++.....+-..+..+=-+++..++. .--+=++|+-..-+..+...|..|+.....++..-
T Consensus 792 ~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~---aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~ 867 (1353)
T TIGR02680 792 HRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELER---DAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAV 867 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544444443344444443 33344566666666666777777776666555433
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=11 Score=45.84 Aligned_cols=130 Identities=21% Similarity=0.268 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHH--------HHHHhhhhHHhhhhhHHHHHHHHHHHHHhHH
Q 007087 182 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQV--------ALAKASMVDDLQNKNQELMKQIEICQEENKI 253 (618)
Q Consensus 182 eAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~--------AlakA~~V~dlQNkN~EL~kQiEIcqEEnki 253 (618)
|...-.++.+|+++|..+..|.-+..-=+..|.+-...++. -...-.-...+-++..+..-++++.+.|-+|
T Consensus 432 e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~ 511 (1293)
T KOG0996|consen 432 EKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDI 511 (1293)
T ss_pred HhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777777776665544433333322221110 0011111234567788888899999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 007087 254 LDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAK 314 (618)
Q Consensus 254 Ldk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaK 314 (618)
|.++|-+-+--|+.|..++....+.+.- -.++|.+..-.+..++.|.+..+.+|...+
T Consensus 512 L~~~~~~~~~~~e~lk~~L~~~~~~~~e---~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 512 LLSRHETGLKKVEELKGKLLASSESLKE---KKTELDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 9998866555555444444333222221 224566777777777777777777775544
No 48
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.90 E-value=0.0072 Score=66.72 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHH
Q 007087 176 AILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILD 255 (618)
Q Consensus 176 aiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLd 255 (618)
.-+..|+..+..+..++..|+....++...+......+.+++..++.--....-+.+...++.+|..++.-+.....| .
T Consensus 171 ~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i-~ 249 (722)
T PF05557_consen 171 NELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEI-N 249 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHH-H
Confidence 334444444444445555555555555555555555555555555544333334455666666666665555444322 2
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 007087 256 KMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 256 k~hRQKvaEVEKLsqTv~E 274 (618)
|+....+..|-.|..+..+
T Consensus 250 k~l~~ql~~i~~LE~en~~ 268 (722)
T PF05557_consen 250 KELKEQLAHIRELEKENRR 268 (722)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333
No 49
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.84 E-value=4.3 Score=39.72 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=53.1
Q ss_pred HhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHH
Q 007087 176 AILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILD 255 (618)
Q Consensus 176 aiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLd 255 (618)
.-|.-||..|+-++...........-..|=+..=|..|-.++..+.. +.+++.+|..+|...-..-+-|+
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~----------~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA----------AESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hchhHHHHHHHHHHHHHHHHHhh
Confidence 34566677777666555544443333333333333333333333333 33344444444444333333332
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007087 256 KMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDREL 310 (618)
Q Consensus 256 k~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerEL 310 (618)
...-+----.+++...|+.|++-+-... +-+-+-.++|..|+.+...|+.+|
T Consensus 162 ~~~~~~~~re~~~e~~i~~L~~~lkeaE---~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 162 ASEEKASEREDEYEEKIRDLEEKLKEAE---NRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211112344444444444443321 112223455666666666666665
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.78 E-value=6.5 Score=41.50 Aligned_cols=15 Identities=13% Similarity=0.354 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHH
Q 007087 370 AQLKEKYHLRLKVLE 384 (618)
Q Consensus 370 aQLKeK~klRLk~lE 384 (618)
-++.+.+...|+.|.
T Consensus 427 ~~~n~~~~~~L~~l~ 441 (562)
T PHA02562 427 PYFNKQINHYLQIME 441 (562)
T ss_pred HHHHHHHHHHHHHhh
Confidence 566667777777764
No 51
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=94.55 E-value=8.4 Score=41.70 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=28.1
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHHHHH
Q 007087 541 AIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAA 576 (618)
Q Consensus 541 aIeML~KKVdtLtKamEVEaKKmrREvaa~EKEvaa 576 (618)
=++-|-.-|..+|...--|.--+|.|+|-||--|+-
T Consensus 259 R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Y 294 (395)
T PF10267_consen 259 RYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAY 294 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355666778888888888888999999999876553
No 52
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.39 E-value=9.6 Score=41.74 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHH
Q 007087 87 RELGEAQAEIKALRLSERLREKA-------VEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQF 153 (618)
Q Consensus 87 rEL~~A~aEIkaLr~se~~kdKA-------veel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQf 153 (618)
+.|...++||+.+...-..-.+- |.+++.++..++..|..|++-+...+..|.-++.... +|..|-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~-~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN-ALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH-HHHHHH
Confidence 44555555555555555544444 4455555555555555555555555556665555554 444444
No 53
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.90 E-value=2.9 Score=46.88 Aligned_cols=126 Identities=22% Similarity=0.350 Sum_probs=62.7
Q ss_pred hhhhHHhhhhhHHHHHHHHHHH----HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 007087 227 ASMVDDLQNKNQELMKQIEICQ----EENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEE 302 (618)
Q Consensus 227 A~~V~dlQNkN~EL~kQiEIcq----EEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneE 302 (618)
-.+|+.-.++..+|..|-|... +|..-|...+.-+..|..+.-+.|.++.+-+.. ...-++.....+.+|..|
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~---~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKE---IEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666543 233333333222222222222222222222211 111233333333333333
Q ss_pred HhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHH
Q 007087 303 RKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLA 360 (618)
Q Consensus 303 k~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLA 360 (618)
...+-...-| ..|..|+=-+|.|=-|-.. -+..-|.+-|-||-||..|.+||-
T Consensus 477 ~e~~~k~~~R-s~Yt~RIlEIv~NI~KQk~----eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 477 LEKLPKDVNR-SAYTRRILEIVKNIRKQKE----EIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHhCCCCCCH-HHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 3344444455888877653 355778899999999999999983
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=93.88 E-value=0.7 Score=48.34 Aligned_cols=106 Identities=25% Similarity=0.412 Sum_probs=61.7
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCChhHHhhhcC---CCch---------hHhhhhhhHHHhhhhHHHHHHHH
Q 007087 27 PPPLMSSASFKEGGGGRSSSRRRPVRPSFDADNEFMTLLHG---SDPV---------KVELNRLENEVRDKDRELGEAQA 94 (618)
Q Consensus 27 ~~~l~~~~sf~~~~~~~~~~r~~~~r~~~~~~~~~~~~~hg---sdPv---------~~ElnRLeN~lr~KdrEL~~A~a 94 (618)
.|+-++|+|||....+.. +|++.|-..-.|| || ++|= -|=+.-|.-.||+-.+.|.+--.
T Consensus 18 ~~SSsnSgS~KgSd~Sp~--~rr~~rY~~C~dN------HGikPP~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRet 89 (305)
T PF15290_consen 18 TPSSSNSGSCKGSDSSPT--MRRSGRYMSCGDN------HGIKPPNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRET 89 (305)
T ss_pred CcccCCCccccCCCCCCC--CCCCCceeecccC------CCCCCCCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 367788999998765553 3455555444553 67 4442 23445566666666666666667
Q ss_pred HHHHHHhhH-HHHH-------------HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh
Q 007087 95 EIKALRLSE-RLRE-------------KAVEELTEELSKVEEKLKLAENLIETKNLEIKK 140 (618)
Q Consensus 95 EIkaLr~se-~~kd-------------KAveel~~el~kldEKLk~tE~lle~knLEiKk 140 (618)
||..||.+- |.++ =|+.|-+.|++.|+.=...+-+-|-.|..-|.|
T Consensus 90 EI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 777776542 2222 245555666666666555555555555444444
No 55
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.75 E-value=20 Score=43.13 Aligned_cols=122 Identities=28% Similarity=0.318 Sum_probs=85.6
Q ss_pred hhhhHHHhhhhHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh------------------hhhh
Q 007087 76 NRLENEVRDKDRE-LGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIE------------------TKNL 136 (618)
Q Consensus 76 nRLeN~lr~KdrE-L~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle------------------~knL 136 (618)
+.|.+-.+.-+-+ |..++-|..-||-.+..=++.+.+-+.-+..|.......+..|| .+=+
T Consensus 162 ~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v 241 (1072)
T KOG0979|consen 162 ELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWV 241 (1072)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3466666666666 88888888888877766665555555544444444444443333 3456
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHH
Q 007087 137 EIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKAL 202 (618)
Q Consensus 137 EiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkAL 202 (618)
+.++-.+|..+-+.|---+-+.||.+- .+.-||+.-+-|||.+....+.+|..++.+.+.-
T Consensus 242 ~y~~~~~ey~~~k~~~~r~k~~~r~l~-----k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~ 302 (1072)
T KOG0979|consen 242 EYKKHDREYNAYKQAKDRAKKELRKLE-----KEIKPIEDKKEELESEKKETRSKISQKQRELNEA 302 (1072)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Confidence 677778888888888887888888754 4567999999999998888888888888776543
No 56
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.37 E-value=16 Score=40.65 Aligned_cols=261 Identities=28% Similarity=0.390 Sum_probs=154.5
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH-HHH--------HHHHHHHHHHHHHHhHHHhhhhhhhhhhhhh
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKALRLSERLREKA-VEE--------LTEELSKVEEKLKLAENLIETKNLEIKKIND 143 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKA-vee--------l~~el~kldEKLk~tE~lle~knLEiKklnd 143 (618)
.++|||+.++..|=++|..-- ||-+-+.---| +.+ -.+-..-|.+....++.+|+-+-++.+.+
T Consensus 245 dq~~~LsE~~~k~~q~Le~~~-----~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~-- 317 (593)
T KOG4807|consen 245 DQQNRLSEEIEKKWQELEKLP-----LRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAP-- 317 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-----hhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCc--
Confidence 578888888888877775321 11110000000 000 01223334444555556666665555322
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHH----HHHHHHHhhhc-hHHHHHHHhhHHHHHHHHHH
Q 007087 144 EKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL----ARQEIAKLQDD-NKALDRLTKSKEAALLEAER 218 (618)
Q Consensus 144 EKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~----~r~Ei~kLqdd-nkALerltKsKEaALleaeR 218 (618)
|-|+ + .|.|--.||....-|.+|--+-. ..+-|+.||-. -|-|++|-.-||.-|.| -
T Consensus 318 --------q~~~-~-------s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE--E 379 (593)
T KOG4807|consen 318 --------QSAL-R-------SQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE--E 379 (593)
T ss_pred --------hhhH-h-------hhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--h
Confidence 2222 2 46667789998887777754322 23356666653 47788888888876643 2
Q ss_pred HHHHHHHHhhhhHHhhhhhH-HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH---------HHHHHHhc--hhhH
Q 007087 219 TVQVALAKASMVDDLQNKNQ-ELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE---------LEEAVLAG--GAAA 286 (618)
Q Consensus 219 ~v~~AlakA~~V~dlQNkN~-EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E---------LEEavLAg--gAaA 286 (618)
+ -|-++.++-+.|--+ |+.+.++..|--|-=.|.+.||-..||+-+.-++.= ||-+-||- .|--
T Consensus 380 T----AATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaer 455 (593)
T KOG4807|consen 380 T----AATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAER 455 (593)
T ss_pred h----hhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233445556666444 566888888888888888899988888777655433 55555544 4455
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhccc----------ccCCCC--ccchhhHHHHhhhhHHHHHH
Q 007087 287 NAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEW----------KDANDK--VMPVKQWLEERRFLQGEMQQ 354 (618)
Q Consensus 287 NAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEW----------KD~ndk--VmPVKqWLEErRflQGEmqr 354 (618)
-|+|.+|+.-+|||--...|.--|| .-..|.-+.+++.+ ||+-+- ++-|| --|--||.-||+-
T Consensus 456 qaLRqCQrEnQELnaHNQELnnRLa---aEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVK--EsEiQYLKqEiss 530 (593)
T KOG4807|consen 456 QALRQCQRENQELNAHNQELNNRLA---AEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVK--ESEIQYLKQEISS 530 (593)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHHH---HHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhh--HHHHHHHHHHHHH
Confidence 7899999998998877766665443 22334444444433 222111 12333 2466789999999
Q ss_pred HHHHHHHhHHhhh
Q 007087 355 LRDRLAITERTAK 367 (618)
Q Consensus 355 LrdKLAiaERtAk 367 (618)
|+|.|..+-|--|
T Consensus 531 LkDELQtalrDKk 543 (593)
T KOG4807|consen 531 LKDELQTALRDKK 543 (593)
T ss_pred HHHHHHHHHhhhh
Confidence 9999988877543
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.74 E-value=21 Score=40.39 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=22.2
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007087 78 LENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSK 119 (618)
Q Consensus 78 LeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~k 119 (618)
||++|....+|..+-..+...|.-....-.+-+++|..+|..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555555555444333444444444333
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.55 E-value=11 Score=36.89 Aligned_cols=197 Identities=17% Similarity=0.266 Sum_probs=94.3
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh----HHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 179 APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMV----DDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 179 ApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V----~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
+-|+.+|..+...+..++...+..+.-...=|..+....|.++.....--.+ .++++++.++.+..+.+..-.+.|
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444444444444444444433322222 356777777777777777777777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhch-----------hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhh
Q 007087 255 DKMHRQKVAEVEKLTQTVRELEEAVLAGG-----------AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV 323 (618)
Q Consensus 255 dk~hRQKvaEVEKLsqTv~ELEEavLAgg-----------AaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~v 323 (618)
+.-+-.-.--++.|.+.+.+......-.. ..=.-+.....++.........|+.+| +++.|.+-..
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el---~~~~~~lk~l 160 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL---KSVGNNLKSL 160 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH---HHHHHHHHHh
Confidence 65444333333333333333222211100 000112222233333333334444444 2222222111
Q ss_pred hhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHhhcC
Q 007087 324 VANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRG 389 (618)
Q Consensus 324 vAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLKeK~klRLk~lEe~Lk~ 389 (618)
-+. ..+.-+.---+.-.|..|.++|..+|..+-.--.--.+|..++..||+.|..
T Consensus 161 E~~-----------~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 161 EAS-----------EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0111111233566688888888888876654444455888888888887753
No 59
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.43 E-value=1.5 Score=51.00 Aligned_cols=191 Identities=24% Similarity=0.349 Sum_probs=119.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhhhhhhhHHH----
Q 007087 80 NEVRDKDRELGEAQAEIKALRLSE--------RLREKAVEELTEELSKVEEKLKLAENLIETK-NLEIKKINDEKR---- 146 (618)
Q Consensus 80 N~lr~KdrEL~~A~aEIkaLr~se--------~~kdKAveel~~el~kldEKLk~tE~lle~k-nLEiKklndEKK---- 146 (618)
|+=+.-....+++.+|-+-|-+.. ..|.+-+++..+.++-++==|+.+-.||... .-||.+|--|=-
T Consensus 291 ~Ee~~a~E~i~e~tSE~kdlni~~~d~~~~kd~qk~~n~~kta~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cis 370 (861)
T PF15254_consen 291 NEEKCAEEQIEEATSEGKDLNIQVRDAKTVKDVQKAKNPNKTAEKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACIS 370 (861)
T ss_pred ccccchHHHhhhccchhhhcccccCchhhhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 554555667777777766654422 2355556666666666665555555555433 456666554433
Q ss_pred --------------HhHHHHHH--HHHHHHH-----------HhhhccCCCCC-------hhHHhhhccHHHHHHHHHHH
Q 007087 147 --------------ASMAAQFA--AEATLRR-----------VHAAQKDDDMP-------PIEAILAPLEAELKLARQEI 192 (618)
Q Consensus 147 --------------~alAAQfA--AEAtLRR-----------vHa~QKDddmp-------pieaiiApLeAelk~~r~Ei 192 (618)
-|||-|-- =-|-||| --.++|.-..+ .+-+.=--||..|+-.....
T Consensus 371 lLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~ 450 (861)
T PF15254_consen 371 LLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ 450 (861)
T ss_pred hhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Confidence 23443321 1123433 23344444322 22233334555555554444
Q ss_pred HHhh--------------hchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-hHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 007087 193 AKLQ--------------DDNKALDRLTKSKEAALLEAERTVQVALAKASM-VDDLQNKNQELMKQIEICQEENKILDKM 257 (618)
Q Consensus 193 ~kLq--------------ddnkALerltKsKEaALleaeR~v~~AlakA~~-V~dlQNkN~EL~kQiEIcqEEnkiLdk~ 257 (618)
..|| |+|+-|-.+++-||-.|++-.+..+.-..+-.| |++.--+.+-++=-+|....||+||.-.
T Consensus 451 e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it 530 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT 530 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH
Confidence 4454 999999999999999999998887777766655 3454455566666788899999999999
Q ss_pred hhhHHHHHHHHHH
Q 007087 258 HRQKVAEVEKLTQ 270 (618)
Q Consensus 258 hRQKvaEVEKLsq 270 (618)
-||+.+||++|..
T Consensus 531 lrQrDaEi~RL~e 543 (861)
T PF15254_consen 531 LRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999853
No 60
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.22 E-value=34 Score=41.61 Aligned_cols=91 Identities=23% Similarity=0.212 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHH---HHHHHhhhccCCCCChhHHhhhccHHHHHHH
Q 007087 112 ELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEA---TLRRVHAAQKDDDMPPIEAILAPLEAELKLA 188 (618)
Q Consensus 112 el~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEA---tLRRvHa~QKDddmppieaiiApLeAelk~~ 188 (618)
|+..|+..++.+....|+....-....+.|..|||.+-..--=|+- ..-+.|+.|+.. +-..|-++|+++..+
T Consensus 157 ElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~----~L~qLfhvE~~i~k~ 232 (1141)
T KOG0018|consen 157 ELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQ----FLWELFHVEACIEKA 232 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHhhh
Confidence 4557888888888888888888788888888888755443333332 122344444432 112233344444444
Q ss_pred HHHHHHhhhchHHHHHHH
Q 007087 189 RQEIAKLQDDNKALDRLT 206 (618)
Q Consensus 189 r~Ei~kLqddnkALerlt 206 (618)
-.++..+..+++++..-.
T Consensus 233 ~~els~~~~ei~~~~~~~ 250 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERM 250 (1141)
T ss_pred hHHHHHHhhhhHHHHhhh
Confidence 444444444444433333
No 61
>PRK09039 hypothetical protein; Validated
Probab=92.07 E-value=4.8 Score=41.96 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=28.3
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERL-REKAVEELTEELSKVEEKLKLAENLIE 132 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~-kdKAveel~~el~kldEKLk~tE~lle 132 (618)
|+..++.+|.+...++.+ -+|+=.|..+... =+..|.+++..+.-+......+++.+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~-L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE-LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555544 3444444333221 233455555555555555555555444
No 62
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.01 E-value=19 Score=38.19 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhh
Q 007087 287 NAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV 323 (618)
Q Consensus 287 NAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~v 323 (618)
..+...+.++.++..+....+..|.+..+.|--=.+|
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V 327 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVL 327 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEE
Confidence 3455667788888888888888888888877543333
No 63
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.65 E-value=31 Score=39.90 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=15.9
Q ss_pred ccchhhHHHHhhhhH---HHHHHHHHHH
Q 007087 335 VMPVKQWLEERRFLQ---GEMQQLRDRL 359 (618)
Q Consensus 335 VmPVKqWLEErRflQ---GEmqrLrdKL 359 (618)
+--++.|++..+.+. ++++.++.++
T Consensus 568 ~~~l~~~~~~~~~~~~~~~~l~~~r~~~ 595 (908)
T COG0419 568 LQELKELLEELRLLRTRKEELEELRERL 595 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777666 7777777444
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.63 E-value=15 Score=36.33 Aligned_cols=47 Identities=34% Similarity=0.473 Sum_probs=25.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHhhh-hHHHH---HHHHHHHHHHHHHhh
Q 007087 341 WLEERRFLQGEMQQLRDRLAITERTAK-SEAQL---KEKYHLRLKVLEESL 387 (618)
Q Consensus 341 WLEErRflQGEmqrLrdKLAiaERtAk-aEaQL---KeK~klRLk~lEe~L 387 (618)
+-..-.-|+.|+..|+.+.+..|+... .++++ .+.|+..+..||.-|
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el 271 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEEL 271 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 333334466777777777666666542 12222 235566666666544
No 65
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.60 E-value=16 Score=36.61 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
+...+.++.+++.+...+...|....++|=
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP 277 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQRLIIRSP 277 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcEEECC
Confidence 455566666677777777777777666553
No 66
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.57 E-value=4.6 Score=43.56 Aligned_cols=111 Identities=29% Similarity=0.403 Sum_probs=70.5
Q ss_pred HHHHHHHH-----HHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 182 EAELKLAR-----QEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 182 eAelk~~r-----~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
|-.||+|- ..|-|+.|.+..|..+-.+=| ++-.=-+.||-+|+.|+-|+=-.++ ++-|
T Consensus 62 e~qlk~aa~~llq~kirk~~e~~eglr~i~es~~--------------e~q~e~~qL~~qnqkL~nqL~~~~~---vf~k 124 (401)
T PF06785_consen 62 EKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVE--------------ERQQESEQLQSQNQKLKNQLFHVRE---VFMK 124 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHH---HHHH
Confidence 56666653 245566666555544333322 2333346789999999999987777 5544
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 007087 257 MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVT 316 (618)
Q Consensus 257 ~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ 316 (618)
|. .+..+|..+|+.++|-=..-.+ -+.+|.+.|-|+.||-.+|.|||+-+..+
T Consensus 125 ~k----~~~q~LE~li~~~~EEn~~lql---qL~~l~~e~~Ekeeesq~LnrELaE~lay 177 (401)
T PF06785_consen 125 TK----GDIQHLEGLIRHLREENQCLQL---QLDALQQECGEKEEESQTLNRELAEALAY 177 (401)
T ss_pred hc----chHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 42 2334566666665553111111 27789999999999999999999887654
No 67
>PRK11281 hypothetical protein; Provisional
Probab=91.50 E-value=40 Score=40.92 Aligned_cols=221 Identities=22% Similarity=0.266 Sum_probs=122.5
Q ss_pred hHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 60 EFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSER------LREKAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 60 ~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~------~kdKAveel~~el~kldEKLk~tE~lle~ 133 (618)
+-+.++..-|=..-+...|+..+.+-.+++.+|+++|.+|+.... ...-.+.+|+..+..+..-|...+..|..
T Consensus 67 ~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~ 146 (1113)
T PRK11281 67 QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAE 146 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777888888888999999999999998886211 12223455555555555556666666665
Q ss_pred hhhhhhhhhhHHHHhHHHHHHHHH---HHHHHhhhccCCCCChhHHhhhccHHHHHHHHHH-------------------
Q 007087 134 KNLEIKKINDEKRASMAAQFAAEA---TLRRVHAAQKDDDMPPIEAILAPLEAELKLARQE------------------- 191 (618)
Q Consensus 134 knLEiKklndEKK~alAAQfAAEA---tLRRvHa~QKDddmppieaiiApLeAelk~~r~E------------------- 191 (618)
-|-.+-.++..=..+-+.-.+|-. +++.-..+....+-|--++...-|++|+.+...+
T Consensus 147 ~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~ 226 (1113)
T PRK11281 147 YNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQ 226 (1113)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 555555544432222222222222 2333233333333332234444455555444422
Q ss_pred ---------HHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHH--------hhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 192 ---------IAKLQDDNKALDRLTKSKEAALLEAERTVQVALAK--------ASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 192 ---------i~kLqddnkALerltKsKEaALleaeR~v~~Alak--------A~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
+..++.....|...+.. .-+.++|.+++.|..- -.++.+....|..|..++....+...-|
T Consensus 227 ~q~d~~~~~~~~~~~~~~~lq~~in~--kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l 304 (1113)
T PRK11281 227 KQRDYLTARIQRLEHQLQLLQEAINS--KRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTL 304 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333322 2233444455554210 1124445566888888887766666666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhc
Q 007087 255 DKMHRQKVAEVEKLTQTVRELEEAVLAG 282 (618)
Q Consensus 255 dk~hRQKvaEVEKLsqTv~ELEEavLAg 282 (618)
..-+++=-.-++.++||.+-++|-|...
T Consensus 305 ~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 305 TQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666677888999999999988754
No 68
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.30 E-value=22 Score=37.69 Aligned_cols=143 Identities=22% Similarity=0.339 Sum_probs=83.7
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 007087 179 APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMH 258 (618)
Q Consensus 179 ApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~h 258 (618)
--|..|++..|+.+..+|.|++.|---+..-..-.. ...-. .+. ..-..|-.|+|-.++.+.-|+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--------~~~~~---~~~-~ere~lV~qLEk~~~q~~qLe--- 146 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--------GIGAR---HFP-HEREDLVEQLEKLREQIEQLE--- 146 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--------ccccc---ccc-hHHHHHHHHHHHHHHHHHHHH---
Confidence 357788888888888888888877542221111110 00000 000 122334444444444444442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccch
Q 007087 259 RQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPV 338 (618)
Q Consensus 259 RQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPV 338 (618)
--+...+.|.||++-- =-.|+.|++.||.|..-+ - | +..-+++.|
T Consensus 147 -------~d~qs~lDEkeEl~~E-------RD~yk~K~~RLN~ELn~~----------L--------~---g~~~rivDI 191 (319)
T PF09789_consen 147 -------RDLQSLLDEKEELVTE-------RDAYKCKAHRLNHELNYI----------L--------N---GDENRIVDI 191 (319)
T ss_pred -------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----------h--------C---CCCCCcccH
Confidence 1234455566665432 123789999998876322 1 1 222377889
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 007087 339 KQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHL 378 (618)
Q Consensus 339 KqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLKeK~kl 378 (618)
.--+.|=|||+-.+.++++....+-.+. .||+.
T Consensus 192 DaLi~ENRyL~erl~q~qeE~~l~k~~i-------~KYK~ 224 (319)
T PF09789_consen 192 DALIMENRYLKERLKQLQEEKELLKQTI-------NKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 9999999999999999999887765543 28885
No 69
>PRK01156 chromosome segregation protein; Provisional
Probab=90.68 E-value=35 Score=38.86 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=18.8
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHHhhH
Q 007087 178 LAPLEAELKLARQEIAKLQDDNKALDRLTKSK 209 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddnkALerltKsK 209 (618)
+-+|+.+|.....++..|.++..-+..+.+..
T Consensus 524 ~~~l~~~l~~~~~~l~~le~~~~~~~~l~~~~ 555 (895)
T PRK01156 524 IESARADLEDIKIKINELKDKHDKYEEIKNRY 555 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666555444433
No 70
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.43 E-value=16 Score=34.60 Aligned_cols=96 Identities=25% Similarity=0.335 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHH----hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 181 LEAELKLARQEIAKLQDDNKALDRLT----KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnkALerlt----KsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
.+.+||.++.+-+.|++-+-+|+|=+ .+++.++++|+..-...-..=.-+..|-.....|.-.+..|..|+..|++
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999988866 45666666666554444444444566666777788889999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 007087 257 MHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 257 ~hRQKvaEVEKLsqTv~ELE 276 (618)
+--.+-..|.-|-.....++
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 87666444444443333333
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=34 Score=41.51 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=101.2
Q ss_pred hhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHH---
Q 007087 75 LNRLENEVRDKDRELGEAQAEIKALRLSERLR-EKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMA--- 150 (618)
Q Consensus 75 lnRLeN~lr~KdrEL~~A~aEIkaLr~se~~k-dKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alA--- 150 (618)
.+.|.++|.-+-++|.-+. +-+..++.-+ -..+.++.+++......++.++..+....-+|++|..-.+++-+
T Consensus 710 f~~l~~ql~l~~~~l~l~~---~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re 786 (1174)
T KOG0933|consen 710 FRDLKQQLELKLHELALLE---KRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE 786 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Confidence 3444445555555554443 3444555444 24566777777777777777777777666666555433332211
Q ss_pred ----HHHHHH-HHHHHHhhhc-----cCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHH
Q 007087 151 ----AQFAAE-ATLRRVHAAQ-----KDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 220 (618)
Q Consensus 151 ----AQfAAE-AtLRRvHa~Q-----KDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v 220 (618)
.+-.=- -+-+|+.++- +.+++--|..=+--|+.++.++++....+-..+.-|.+-+-.=++.+..++..+
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 111100 0011111111 122333444445556667777777766666666666666666666666666666
Q ss_pred HHHHHHhhhhHHhh----hhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 007087 221 QVALAKASMVDDLQ----NKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 221 ~~AlakA~~V~dlQ----NkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E 274 (618)
..+++.-....+.| -+.-.++.-+++|..|+....--.--++-||.++.+.-..
T Consensus 867 ~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~ 924 (1174)
T KOG0933|consen 867 KKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKAN 924 (1174)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHH
Confidence 65555433332222 2233445566778877775532223334555555554433
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.80 E-value=17 Score=33.89 Aligned_cols=114 Identities=28% Similarity=0.400 Sum_probs=73.5
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHH
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKI 253 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnki 253 (618)
+++.+.-||.+....-++|..|+--+.-|+.=+-.=+..|.++...+........-++-|+.+++-|-.+++...
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae----- 93 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAE----- 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHH-----
Confidence 345556666666677777777777777777766666666666666666666666666666666666665555443
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 007087 254 LDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELA 311 (618)
Q Consensus 254 Ldk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELA 311 (618)
.+|..|...|+++=.. .-.|.|++..|..+...|+.-+.
T Consensus 94 ------------~~L~e~~ekl~e~d~~-------ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 94 ------------KKLKETTEKLREADVK-------AEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred ------------HHHHHHHHHHHHHHHH-------hHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445555555554332 34678888888888888776553
No 73
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.50 E-value=37 Score=37.26 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 007087 264 EVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARA 313 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARa 313 (618)
.++.+.+...+++.-+..-.....-+...+.++.++.++...+..+|...
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554333222345566666666666666666666555
No 74
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.37 E-value=2.2 Score=47.70 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=47.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHH----H------------------------HhhhHHHHHHHHHHHHHHHHHHHH--
Q 007087 231 DDLQNKNQELMKQIEICQEENKILD----K------------------------MHRQKVAEVEKLTQTVRELEEAVL-- 280 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnkiLd----k------------------------~hRQKvaEVEKLsqTv~ELEEavL-- 280 (618)
..|+.+|.+|.+.++.++.++.+|+ + -...|-.+++.|.++...|.+-|-
T Consensus 506 ~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 506 NELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467777777777777777776665 1 123466788888888888887773
Q ss_pred hch-hhHHH-H-----HHHHHHHHHHHHHHhhHHHHHhhhhh
Q 007087 281 AGG-AAANA-V-----RDYQRKVQEMNEERKTLDRELARAKV 315 (618)
Q Consensus 281 Agg-AaANA-V-----Rdyqrq~~eLneEk~tLerELARaKv 315 (618)
-+| ..... + --.+..+.+|..++..++.-..|-|-
T Consensus 586 e~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLke 627 (722)
T PF05557_consen 586 EEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKE 627 (722)
T ss_dssp TTTT----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22111 1 12244456666666665555544443
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.23 E-value=45 Score=37.99 Aligned_cols=139 Identities=22% Similarity=0.378 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHH-------HhhhchHHHHHHHhhHHHHHHHHHHHHHHH----HHHhhhhHHhh----------hhhHH
Q 007087 181 LEAELKLARQEIA-------KLQDDNKALDRLTKSKEAALLEAERTVQVA----LAKASMVDDLQ----------NKNQE 239 (618)
Q Consensus 181 LeAelk~~r~Ei~-------kLqddnkALerltKsKEaALleaeR~v~~A----lakA~~V~dlQ----------NkN~E 239 (618)
|++++...+.|+. ..-.+|..|.+|...+|..|.+.++.++.- -....+++.+| .+|.+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~e 164 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRE 164 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHH
Confidence 4444454455544 444577889999999999999999887653 34567777777 48999
Q ss_pred HHHHHHHHHHH-----hHH---HHHH------hhhHHHHHHHHHHHHHHHHHHHHhch-hhHHH----------HHHHHH
Q 007087 240 LMKQIEICQEE-----NKI---LDKM------HRQKVAEVEKLTQTVRELEEAVLAGG-AAANA----------VRDYQR 294 (618)
Q Consensus 240 L~kQiEIcqEE-----nki---Ldk~------hRQKvaEVEKLsqTv~ELEEavLAgg-AaANA----------VRdyqr 294 (618)
|+.|+...|+- |.- .++. .|.=-.-...|...+..+++.|..-. .+.+. +.-|..
T Consensus 165 LK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a 244 (617)
T PF15070_consen 165 LKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVA 244 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998761 111 1111 11111122345555666666666442 22221 445666
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhhhh
Q 007087 295 KVQEMNEERKTLDRELARAKVTANR 319 (618)
Q Consensus 295 q~~eLneEk~tLerELARaKv~ANR 319 (618)
..+.+..|+-.|.+++-.-.-.++|
T Consensus 245 ~~q~l~~e~e~L~~q~l~Qtql~d~ 269 (617)
T PF15070_consen 245 AYQQLASEKEELHKQLLQQTQLMDR 269 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888998887554444554
No 76
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.14 E-value=38 Score=37.00 Aligned_cols=45 Identities=31% Similarity=0.280 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007087 233 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVL 280 (618)
Q Consensus 233 lQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavL 280 (618)
++-.++.|..||+++..|-.=+ .-+...+++.+.+.+.+++..+.
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~---e~~~~~~~~~~~~~~~~~~~~~~ 330 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDL---EAQLEGEQESFREQPQELSQQLE 330 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455666667776655554322 23445566666666666666554
No 77
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.90 E-value=49 Score=38.81 Aligned_cols=156 Identities=29% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHh-----hhhHHhhhhhHHHHHHHH
Q 007087 182 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAER-----------TVQVALAKA-----SMVDDLQNKNQELMKQIE 245 (618)
Q Consensus 182 eAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR-----------~v~~AlakA-----~~V~dlQNkN~EL~kQiE 245 (618)
|+|.-..|+++......+-++|.-.--=|.||-+.=| .++.|+.+. .+--+|+.++.|+.+++.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHhchhhH---HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhh
Q 007087 246 ICQEENKILDKMHRQKVAEVEKLTQTVRELE---EAVLAGGAAA---NAVRDYQRKVQEMNEERKTLDRELARAKVTANR 319 (618)
Q Consensus 246 IcqEEnkiLdk~hRQKvaEVEKLsqTv~ELE---EavLAggAaA---NAVRdyqrq~~eLneEk~tLerELARaKv~ANR 319 (618)
...-||..|-++--.|..-|..|+..-...| +.+.+.-.++ |+-=-|+=.+-.=.=|.|+.|||+ ||
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~-------~~ 175 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY-------SR 175 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hH
Q ss_pred hhhhhhcccccCCCCccchhhHHHHhhh---hHHHHHHHH
Q 007087 320 VATVVANEWKDANDKVMPVKQWLEERRF---LQGEMQQLR 356 (618)
Q Consensus 320 VA~vvAnEWKD~ndkVmPVKqWLEErRf---lQGEmqrLr 356 (618)
=|.=+|+ |||||-..= |-+|-||||
T Consensus 176 ~~ae~a~------------kqhle~vkkiakLEaEC~rLr 203 (769)
T PF05911_consen 176 RAAEAAS------------KQHLESVKKIAKLEAECQRLR 203 (769)
T ss_pred HHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
No 78
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.61 E-value=45 Score=37.16 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 88 ELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 88 EL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~ 133 (618)
++.++.++|+.+......-..-+.++..++..+..++...+..+.+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555555555555555544443
No 79
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.58 E-value=5.2 Score=39.50 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=51.7
Q ss_pred CCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 170 DMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 170 dmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
+-||.-..+.-||.+|...+.+++.+..+.... ..+.+..+.. ....+.+|+++|++|..|++..+.
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~----------~~~l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQR----------TAEMQQKVAQ---SDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888899999999999998888877663311 1111222222 334467799999999999999999
Q ss_pred HhHHHH
Q 007087 250 ENKILD 255 (618)
Q Consensus 250 EnkiLd 255 (618)
++..|+
T Consensus 154 ~~~~l~ 159 (206)
T PRK10884 154 KVDAAN 159 (206)
T ss_pred HHHHHH
Confidence 988773
No 80
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.21 E-value=21 Score=32.93 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=66.5
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh
Q 007087 172 PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN 251 (618)
Q Consensus 172 ppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEn 251 (618)
.|--.++--|.+.|+.-..|+..|++.+..|+ ..|+.+-.|.=+-.....+. .....++.+|..+++..+...
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~---~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLE---AERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRY 84 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888888888888888866554 44554444433333333222 223334455666666666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 252 KILDKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 252 kiLdk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
..+=-|-=.|.-+|+.|..-|..+.+.
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 666667789999999999999988764
No 81
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.89 E-value=56 Score=37.43 Aligned_cols=156 Identities=21% Similarity=0.325 Sum_probs=75.7
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHH---------
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEIC--------- 247 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIc--------- 247 (618)
..+.|+.|+.+|+.-...+..-+..++-.+.-.-..+. ++=+=++-||-+|-+|++||+--
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie----------~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~ 336 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIE----------EKEEEIEKLQKENDELKKQIELQGISGEDVER 336 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 44555555555555555544444444444432222221 22233566888888888888741
Q ss_pred --HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-----hhhhhhh--
Q 007087 248 --QEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELA-----RAKVTAN-- 318 (618)
Q Consensus 248 --qEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELA-----RaKv~AN-- 318 (618)
+|-|++-.-+++- -.+.++|++.|-+++-- |+..+.++..-..-+..-+- -+.-.+|
T Consensus 337 mn~Er~~l~r~l~~i-~~~~d~l~k~vw~~~l~-------------~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~ 402 (581)
T KOG0995|consen 337 MNLERNKLKRELNKI-QSELDRLSKEVWELKLE-------------IEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLE 402 (581)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1111111000100 01334455555554432 23333333332222222222 2455677
Q ss_pred hhhhhhhcccccCCCCccc-hhhHHHHhhhhHHHHHHHHHHH
Q 007087 319 RVATVVANEWKDANDKVMP-VKQWLEERRFLQGEMQQLRDRL 359 (618)
Q Consensus 319 RVA~vvAnEWKD~ndkVmP-VKqWLEErRflQGEmqrLrdKL 359 (618)
|+..-+++..-|-++.|.| .+-|+- =.++++-.-..++
T Consensus 403 ~~pe~~~~~~~d~k~~V~~~l~el~~---ei~~~~~~~~~~~ 441 (581)
T KOG0995|consen 403 RNPERAATNGVDLKSYVKPLLKELLD---EISEELHEAENEL 441 (581)
T ss_pred cCCccCccccccchhHhHHHHHHHHH---HHHHHHHHHHHHH
Confidence 7788888888888888876 455554 3555554444443
No 82
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.89 E-value=39 Score=40.05 Aligned_cols=92 Identities=33% Similarity=0.351 Sum_probs=62.1
Q ss_pred ChhHHhhhccHHHHHHH----HHHHHHhhhchHHHHHHHhhHHHHH---------------HHHHHHHHHHHH-HhhhhH
Q 007087 172 PPIEAILAPLEAELKLA----RQEIAKLQDDNKALDRLTKSKEAAL---------------LEAERTVQVALA-KASMVD 231 (618)
Q Consensus 172 ppieaiiApLeAelk~~----r~Ei~kLqddnkALerltKsKEaAL---------------leaeR~v~~Ala-kA~~V~ 231 (618)
.|.-.-...++.||-+| |-|++.|.-..|.|...++-+|.+- -..--.+|.-|. -..-.+
T Consensus 372 LPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e 451 (861)
T PF15254_consen 372 LPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQE 451 (861)
T ss_pred hhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 44444455667777776 4588888888888888888888764 111122232222 223358
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 007087 232 DLQNKNQELMKQIEICQEENKILDKMHRQKVA 263 (618)
Q Consensus 232 dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKva 263 (618)
.||++|.||.|-||--.+|||-|-+|---|.-
T Consensus 452 ~lq~kneellk~~e~q~~Enk~~~~~~~ekd~ 483 (861)
T PF15254_consen 452 LLQSKNEELLKVIENQKEENKRLRKMFQEKDQ 483 (861)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999987777444433
No 83
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.64 E-value=53 Score=36.86 Aligned_cols=61 Identities=26% Similarity=0.332 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHhh---hccCCC-CChh-------HHhhhccHHHHHHHHHHHHHhhh
Q 007087 137 EIKKINDEKRASMAAQFAAEATLRRVHA---AQKDDD-MPPI-------EAILAPLEAELKLARQEIAKLQD 197 (618)
Q Consensus 137 EiKklndEKK~alAAQfAAEAtLRRvHa---~QKDdd-mppi-------eaiiApLeAelk~~r~Ei~kLqd 197 (618)
++..++.....+-+...+|++.+.-+.. ..++.. .|+. +.+|+.|..++-....+++.+..
T Consensus 238 ~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~ 309 (754)
T TIGR01005 238 QLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLST 309 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555555555444433 222222 2322 25667777666666655554443
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.36 E-value=38 Score=34.88 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007087 261 KVAEVEKLTQTVRELEE 277 (618)
Q Consensus 261 KvaEVEKLsqTv~ELEE 277 (618)
-..||.+|...+.-||.
T Consensus 274 t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEK 290 (325)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 85
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.13 E-value=87 Score=38.78 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHhHhhhhhHH-----HHHHHHHhHH-HHHhHHHHHHh
Q 007087 536 KDKDDAIEILAKKVDTLTKAM-----EVEAKKMRRE-VAAMEKEVAAM 577 (618)
Q Consensus 536 kdKddaIeML~KKVdtLtKam-----EVEaKKmrRE-vaa~EKEvaa~ 577 (618)
++-..+|+-|.+-|-.+-+++ .++..+-+++ |.++++|+-..
T Consensus 830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555655555555442 2233343455 67777776655
No 86
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.12 E-value=35 Score=34.17 Aligned_cols=83 Identities=28% Similarity=0.401 Sum_probs=67.6
Q ss_pred hHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh----HHHhhhhh
Q 007087 60 EFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLA----ENLIETKN 135 (618)
Q Consensus 60 ~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~t----E~lle~kn 135 (618)
++..++..-|+..-+|+.+|.-+-|--+-..-...-|..+|-+|..=-+.+.+....|.+...|..++ |..|+.-|
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~AN 149 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKAN 149 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567889999999999999999999999999999999999888899999999999999988765 44455556
Q ss_pred hhhhhhh
Q 007087 136 LEIKKIN 142 (618)
Q Consensus 136 LEiKkln 142 (618)
.||..+.
T Consensus 150 eei~~v~ 156 (207)
T PF05010_consen 150 EEIAQVR 156 (207)
T ss_pred HHHHHHH
Confidence 6655443
No 87
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=25 Score=40.49 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=47.2
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHh-------hhhHHhhhhhHHHHHHHHHHHH
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA-------SMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA-------~~V~dlQNkN~EL~kQiEIcqE 249 (618)
.+.+.+.+|+.+..-+++|+..|+.|++.+...++.+-..+..+..+-... .-+..+++.+..|.+.++.-.+
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777888888888888887777776666665555544333 3334455555555555544333
Q ss_pred HhH
Q 007087 250 ENK 252 (618)
Q Consensus 250 Enk 252 (618)
+-.
T Consensus 496 ~ve 498 (652)
T COG2433 496 RVE 498 (652)
T ss_pred HHH
Confidence 333
No 88
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=86.65 E-value=5 Score=38.44 Aligned_cols=53 Identities=34% Similarity=0.396 Sum_probs=47.8
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA 281 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLA 281 (618)
--.+++|....+...|..|+.|--.|-+.++-||..+|+|+-.|.||.|-|..
T Consensus 55 ~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~ 107 (146)
T PF05852_consen 55 EECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEF 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999886653
No 89
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.29 E-value=49 Score=38.30 Aligned_cols=102 Identities=26% Similarity=0.309 Sum_probs=45.7
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHH-------HHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQ-------VALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~-------~AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
-|-+|+.-+.....||..|+.-+..|.+-+-.=++.|.++.+.++ ..-++=.-++.|.-++.|-.+.+|+...
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333333333333222 1223334455555555555555555555
Q ss_pred HhHHHHHHhh-------hHHHHHHHHHHH-HHHHHHH
Q 007087 250 ENKILDKMHR-------QKVAEVEKLTQT-VRELEEA 278 (618)
Q Consensus 250 EnkiLdk~hR-------QKvaEVEKLsqT-v~ELEEa 278 (618)
+-.-|.+|.+ --|..|++||.+ |.++|+.
T Consensus 503 ~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~ 539 (652)
T COG2433 503 KLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEE 539 (652)
T ss_pred HHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHh
Confidence 5555555544 223455566544 3444443
No 90
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.11 E-value=40 Score=33.88 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 288 AVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 288 AVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
.+-+.+.++.++..+...++.+|+.++.-.+
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 197 ELLELERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666655444
No 91
>PRK01156 chromosome segregation protein; Provisional
Probab=86.05 E-value=69 Score=36.59 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhhhh
Q 007087 290 RDYQRKVQEMNEERKTLDRELARAKVTANR 319 (618)
Q Consensus 290 Rdyqrq~~eLneEk~tLerELARaKv~ANR 319 (618)
-..+.++.+++++...|..++...+...|.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~e 441 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDE 441 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666555554444443
No 92
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.94 E-value=52 Score=35.08 Aligned_cols=93 Identities=24% Similarity=0.387 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhh--hhcccccCCCCccchhh
Q 007087 264 EVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV--VANEWKDANDKVMPVKQ 340 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAg-gAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~v--vAnEWKD~ndkVmPVKq 340 (618)
++++|..+--+||-++..- .+-.|-+ +.|+..|+.||+.|.+.|..+ |++ - ... +.+ ....+|-++-..-
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L---~Kqm~~l~~eKr~Lq~~l~~~-~s~-~-~s~~d~~~-~~~~~Dt~e~~~s 229 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEALVNRL---WKQMDKLEAEKRRLQEKLEQP-VSA-P-PSPRDTVN-VSEENDTAERLSS 229 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccc-cCC-C-CCcchHHh-hcccCCchhHHHH
Confidence 3445555555677777765 4556664 579999999999999999875 332 1 122 122 2444555554444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHhh
Q 007087 341 WLEERRFLQGEMQQLRDRLAITERTA 366 (618)
Q Consensus 341 WLEErRflQGEmqrLrdKLAiaERtA 366 (618)
| .++|..|..|||..|+.+++.-
T Consensus 230 h---I~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 230 H---IRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5788999999999998877654
No 93
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.36 E-value=36 Score=38.23 Aligned_cols=117 Identities=26% Similarity=0.287 Sum_probs=75.7
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHh--HHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhh
Q 007087 229 MVDDLQNKNQELMKQIEICQEEN--KILDKMHRQKVAEVEKLT-QTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKT 305 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEn--kiLdk~hRQKvaEVEKLs-qTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~t 305 (618)
.+..++.+..+|.+|+|-..-=+ +-|---.-+++.|++--. ..|+|||-.++|----+|- -.+...+
T Consensus 301 ~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~----------~eel~~~ 370 (521)
T KOG1937|consen 301 KLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIES----------NEELAEK 370 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHH
Confidence 45677788888888888753211 111111234555665555 7788888877764322221 1133344
Q ss_pred HHHHHhh------hhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHH
Q 007087 306 LDRELAR------AKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRL 359 (618)
Q Consensus 306 LerELAR------aKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKL 359 (618)
|-.||.+ -|++..|+--.++|--|-..| +..-|+|+|=||-|+..+.++|
T Consensus 371 Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~D----I~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 371 LRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQD----IVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 589999999999998888744 4478999999999998888877
No 94
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.09 E-value=30 Score=31.51 Aligned_cols=111 Identities=23% Similarity=0.305 Sum_probs=76.6
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch----hhHHHHHHHHHHHHHHHHHHhhHHH
Q 007087 233 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGG----AAANAVRDYQRKVQEMNEERKTLDR 308 (618)
Q Consensus 233 lQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAgg----AaANAVRdyqrq~~eLneEk~tLer 308 (618)
+=|=..+|..+.+.-.+-+.-|..-.+....+++.|+..+..|++-+.... .+-+..+.-+.++..+..-.+.+..
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777776666666666667778888888888888877766542 3334466667777777777777888
Q ss_pred HHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHH
Q 007087 309 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLA 360 (618)
Q Consensus 309 ELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLA 360 (618)
|++|.+..+..+.+ |+--|.|=-.-||.+|+++|.
T Consensus 116 e~~klk~~~~~~~t-----------------q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 116 ELQKLKNQLQQRKT-----------------QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhc
Confidence 88888876665554 333455556678888888774
No 95
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.73 E-value=78 Score=36.03 Aligned_cols=57 Identities=33% Similarity=0.472 Sum_probs=32.5
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAE 128 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE 128 (618)
.-||..|+.+|.+-..++.+...||+.|+.+...=..-+++...+...+.+.+++-+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666655555555555555555554444433
No 96
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.21 E-value=1.1e+02 Score=37.35 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhh
Q 007087 84 DKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKIN 142 (618)
Q Consensus 84 ~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKkln 142 (618)
..+-++..-.+||+-+..+.+.++-.+.....+++..+-++...-.....+|-+++.+.
T Consensus 633 ~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~ 691 (1072)
T KOG0979|consen 633 RIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQ 691 (1072)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444555567777777777777777777777777666666665555555555554443
No 97
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.90 E-value=90 Score=36.07 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCC-CChhHHhhhccHHHHHHHHHHHHHh
Q 007087 117 LSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDD-MPPIEAILAPLEAELKLARQEIAKL 195 (618)
Q Consensus 117 l~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDdd-mppieaiiApLeAelk~~r~Ei~kL 195 (618)
.-|.|-+|+..|.+||++|-|+-+++- | |-.-|..--|-- -|.+...|--||-++--|+.+..+.
T Consensus 375 glk~ds~Lk~leIalEqkkEec~kme~--------q------LkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~ka 440 (654)
T KOG4809|consen 375 GLKRDSKLKSLEIALEQKKEECSKMEA--------Q------LKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKA 440 (654)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHH--------H------HHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999988876543 3 222233322222 3789999999999999999988888
Q ss_pred hhchHHH-------HHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhh-hhhHHHHHHH----HHHHHHhHHHHHHhhhHHH
Q 007087 196 QDDNKAL-------DRLTKSKEAALLEAERTVQVALAKASMVDDLQ-NKNQELMKQI----EICQEENKILDKMHRQKVA 263 (618)
Q Consensus 196 qddnkAL-------erltKsKEaALleaeR~v~~AlakA~~V~dlQ-NkN~EL~kQi----EIcqEEnkiLdk~hRQKva 263 (618)
|-.-+-| +-+-.-|+..+-+.+|-+.. .-..|..+- ++..|+++-. +|-.+|--.+| -|+-.
T Consensus 441 qaevdrlLeilkeveneKnDkdkkiaeler~~kd---qnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d---~sqhl 514 (654)
T KOG4809|consen 441 QAEVDRLLEILKEVENEKNDKDKKIAELERHMKD---QNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMAD---NSQHL 514 (654)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhhhcCchhhh---hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc---hHHHH
Confidence 7655443 33444566666666644322 222232221 1122222221 11122222222 23344
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHH
Q 007087 264 EVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLE 343 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLE 343 (618)
-|++|--.+..+..-+-++||.--..+.....-..--+-.+.+-|+---+- -...+--||-. +|-+.|-+
T Consensus 515 q~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~------lemK~~a~k~~----i~~d~~~~ 584 (654)
T KOG4809|consen 515 QIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEI------LEMKKPAWKPG----IHADMWRE 584 (654)
T ss_pred HHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhhhhcC----CCHHHHHH
Confidence 477776666666666666776655444432211111111122211110000 01125679988 99999999
Q ss_pred HhhhhHHHHHHHHHHHHHhHH
Q 007087 344 ERRFLQGEMQQLRDRLAITER 364 (618)
Q Consensus 344 ErRflQGEmqrLrdKLAiaER 364 (618)
-++-...=+-.++...+.+++
T Consensus 585 ~~~~~~~~~~k~~~ev~~~~~ 605 (654)
T KOG4809|consen 585 THKPSNETVTKGSTEVTLAEC 605 (654)
T ss_pred HhhhhhhHHHhhHHHHHHHHH
Confidence 998877777777766655544
No 98
>PF13514 AAA_27: AAA domain
Probab=83.74 E-value=1e+02 Score=36.62 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccC--CCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHH
Q 007087 293 QRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDA--NDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEA 370 (618)
Q Consensus 293 qrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~--ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAkaEa 370 (618)
..++..+...+..+++++..-.-.++.++..+.-.|.+. ++.+--++.||++-+--+.+++++++.+...+.....-.
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~ 821 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAE 821 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666555444555555555555443 245666788888888788888888888877665543222
Q ss_pred HHHHHHHHHHHH
Q 007087 371 QLKEKYHLRLKV 382 (618)
Q Consensus 371 QLKeK~klRLk~ 382 (618)
+--..++.++..
T Consensus 822 ~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 822 EELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHH
Confidence 222244444433
No 99
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.72 E-value=48 Score=32.82 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHHhhhchHHH----HHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHH
Q 007087 188 ARQEIAKLQDDNKAL----DRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQEL 240 (618)
Q Consensus 188 ~r~Ei~kLqddnkAL----erltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL 240 (618)
++....+.++++++| ...+..-++.|.++...++.|.++....++|-+.|+..
T Consensus 165 v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~ 221 (264)
T PF06008_consen 165 VQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKN 221 (264)
T ss_pred HHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777666 33445556677777777777777777777766665543
No 100
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.42 E-value=1.3e+02 Score=37.51 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=25.8
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHH
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAE 217 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleae 217 (618)
+++.+--++-+++.+......+++.+.-+..+.+.=|.+.+.+.
T Consensus 513 l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~ 556 (1317)
T KOG0612|consen 513 LEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMR 556 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence 44455556666666666666666666666666665555544433
No 101
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.26 E-value=29 Score=31.59 Aligned_cols=92 Identities=21% Similarity=0.279 Sum_probs=54.8
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 175 EAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 175 eaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
..-+..|++|+......+..|++.+..+++-+-+.+.....++..++.+........| |+.|..-.|+.-..=.
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke------e~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE------ELQKLKNQLQQRKTQY 131 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3345557778888888888888888888887777777666666666666555544433 2222222222222222
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 007087 255 DKMHRQKVAEVEKLTQTV 272 (618)
Q Consensus 255 dk~hRQKvaEVEKLsqTv 272 (618)
.+=-|.|..|+++|..-+
T Consensus 132 ~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 132 EHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 222366777777776554
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.13 E-value=34 Score=31.98 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=53.3
Q ss_pred HHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Q 007087 222 VALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNE 301 (618)
Q Consensus 222 ~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLne 301 (618)
-|.+.-..|.++...+..+-.+|.-.+.-|. +=-.+|+++...+.++...+..+.-..-.+-.++|+++-|.+
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~-------~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQ-------QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 3333334444555555554444444444433 334678888888888888888775333334488999998888
Q ss_pred HHhhHHHHHhhh
Q 007087 302 ERKTLDRELARA 313 (618)
Q Consensus 302 Ek~tLerELARa 313 (618)
+....+.-|..+
T Consensus 88 ele~ae~~L~e~ 99 (143)
T PF12718_consen 88 ELEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHH
Confidence 888888777433
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.96 E-value=36 Score=30.84 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=52.1
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHH
Q 007087 275 LEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQ 354 (618)
Q Consensus 275 LEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqr 354 (618)
.|.-+..-+.++.++..++.+++.+..+...|..++.-|+..... --.-|-+++-.|..|+..
T Consensus 47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~-----------------~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE-----------------SEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHH
Confidence 444455556667888888888888888888888877666655421 123599999999999999
Q ss_pred HHHHHHHh
Q 007087 355 LRDRLAIT 362 (618)
Q Consensus 355 LrdKLAia 362 (618)
++.++.-.
T Consensus 110 ~~~r~~dL 117 (132)
T PF07926_consen 110 LEQRIEDL 117 (132)
T ss_pred HHHHHHHH
Confidence 99988543
No 104
>PLN02939 transferase, transferring glycosyl groups
Probab=82.93 E-value=1.2e+02 Score=36.79 Aligned_cols=108 Identities=24% Similarity=0.397 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHHHHHHhH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHHHHHHHHHHHHHhhHHHHHh
Q 007087 235 NKNQELMKQIEICQEENK--ILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA-VRDYQRKVQEMNEERKTLDRELA 311 (618)
Q Consensus 235 NkN~EL~kQiEIcqEEnk--iLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANA-VRdyqrq~~eLneEk~tLerELA 311 (618)
.+||+|.++++...+.-+ ...|.. ---|+.|.|.|.-|||-+.++-+-.++ |+-||.-|.+.+.-...|-.|=.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 324 DQNQDLRDKVDKLEASLKEANVSKFS---SYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred ccchHHHHHHHHHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 478888888776544322 222332 224588889999999999999999998 99999999999988877766642
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccchhhH----------HHHhhhhHHHHHHHHHHH
Q 007087 312 RAKVTANRVATVVANEWKDANDKVMPVKQW----------LEERRFLQGEMQQLRDRL 359 (618)
Q Consensus 312 RaKv~ANRVA~vvAnEWKD~ndkVmPVKqW----------LEErRflQGEmqrLrdKL 359 (618)
+ .+. .+--|+ ||-.-| +-++-+=.+|---||+..
T Consensus 401 ~---~~~-------~~~~~~----~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~ 444 (977)
T PLN02939 401 K---RSL-------EHPADD----MPSEFWSRILLLIDGWLLEKKISNNDAKLLREMV 444 (977)
T ss_pred c---ccc-------cCchhh----CCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Confidence 2 111 122233 674444 445666667777777655
No 105
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=82.86 E-value=47 Score=32.07 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=64.8
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHH----HHHHHH--HHhhhhHHhhhhhHHHHHHH
Q 007087 171 MPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAER----TVQVAL--AKASMVDDLQNKNQELMKQI 244 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR----~v~~Al--akA~~V~dlQNkN~EL~kQi 244 (618)
.|||..+|..=+..| ...+......+.-.+.+...-|..|.+|.. +.+.|- ..|....+..+-..+|+.-|
T Consensus 32 ~ppI~~iLe~R~~~I---~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~ 108 (155)
T PRK06569 32 TPKAEEIFNNRQTNI---QDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSI 108 (155)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666665433322 223333333444444444444444443332 222211 22344566666677777777
Q ss_pred HH-HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 007087 245 EI-CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAV 289 (618)
Q Consensus 245 EI-cqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAV 289 (618)
+. .++=+++.|.+.+++.-|+-+|+..|. +-+.-+.|-.|-+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~---~k~~~~~~~~~~~ 151 (155)
T PRK06569 109 NQNIEDINLAAKQFRTNKSEAIIKLAVNII---EKIAGTKADMNLL 151 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhCccccHHHH
Confidence 65 556677889999999999999999998 4444445655544
No 106
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.38 E-value=5.6 Score=39.96 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccch
Q 007087 259 RQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPV 338 (618)
Q Consensus 259 RQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPV 338 (618)
|.|+.+.+|+...|.+--+.+... ...+.+|.....+|+.|+.-...||.-...=.|-+=.++..-|-+-+.
T Consensus 7 r~K~~~lek~k~~i~~e~~~~e~e---e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~----- 78 (230)
T PF10146_consen 7 RNKTLELEKLKNEILQEVESLENE---EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK----- 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 889999999998887755554433 378999999999999999999999988887777665555444433211
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHh
Q 007087 339 KQWLEERRFLQGEMQQLRDRLAIT 362 (618)
Q Consensus 339 KqWLEErRflQGEmqrLrdKLAia 362 (618)
-.+.-.-+++|...|+|.+...
T Consensus 79 --~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 79 --RQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222556777777666444
No 107
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.35 E-value=1.1e+02 Score=35.97 Aligned_cols=84 Identities=20% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCCCCCCCCChhHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007087 48 RRPVRPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLA 127 (618)
Q Consensus 48 ~~~~r~~~~~~~~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~t 127 (618)
++++.|.-++.|.-.. ..-=|+-.+++.|+|..+-..-++.-|+.. -.|..++..|+-=..+ .-+.-+.+.++..
T Consensus 46 q~s~~~~~~s~n~~~~--s~~~~~~~~l~~Lqns~kr~el~~~k~~~i--~~r~~~~~~dr~~~~~-~~l~~~q~a~~~~ 120 (716)
T KOG4593|consen 46 QPSMQSEERSENITSK--SLLMQLEDELMQLQNSHKRAELELTKAQSI--LARNYEAEVDRKHKLL-TRLRQLQEALKGQ 120 (716)
T ss_pred CcCCCchhhhccchhH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3344444444433333 223477788899999987776666665543 3455555554432222 2233333444444
Q ss_pred HHHhhhhhh
Q 007087 128 ENLIETKNL 136 (618)
Q Consensus 128 E~lle~knL 136 (618)
|..+..+++
T Consensus 121 e~~lq~q~e 129 (716)
T KOG4593|consen 121 EEKLQEQLE 129 (716)
T ss_pred HHHHHHHHH
Confidence 444444333
No 108
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.32 E-value=12 Score=32.25 Aligned_cols=81 Identities=30% Similarity=0.343 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHHHHhhhchHHH--HHHHhhHHHHHHHHHHHHHHHHHH--hhhhHHhhhhhHHHHHHHHHHHHHhHHHH
Q 007087 180 PLEAELKLARQEIAKLQDDNKAL--DRLTKSKEAALLEAERTVQVALAK--ASMVDDLQNKNQELMKQIEICQEENKILD 255 (618)
Q Consensus 180 pLeAelk~~r~Ei~kLqddnkAL--erltKsKEaALleaeR~v~~Alak--A~~V~dlQNkN~EL~kQiEIcqEEnkiLd 255 (618)
.+..++...+.++..|+...|=+ +-|--..=..|...|..+..|+.+ +....=+.+++..|.++...++++|..|
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L- 94 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQL- 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455555555555555333222 112122234577788889988864 5566778899999999999999999999
Q ss_pred HHhhhHHHH
Q 007087 256 KMHRQKVAE 264 (618)
Q Consensus 256 k~hRQKvaE 264 (618)
|+++.|
T Consensus 95 ---~~~~~e 100 (100)
T PF01486_consen 95 ---RQKIEE 100 (100)
T ss_pred ---HHHhcC
Confidence 666554
No 109
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.19 E-value=91 Score=34.86 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=23.0
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007087 78 LENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEE 122 (618)
Q Consensus 78 LeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldE 122 (618)
+.+.+.+.+.++...+.++..+...-..-+..++++...+..+.+
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666665555544444444444444443333
No 110
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=82.02 E-value=15 Score=35.56 Aligned_cols=119 Identities=23% Similarity=0.387 Sum_probs=73.2
Q ss_pred HHhhhhh-HHHHHHHHH-HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchh--h---HHHHHHHHHHHHHHHHHH
Q 007087 231 DDLQNKN-QELMKQIEI-CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGA--A---ANAVRDYQRKVQEMNEER 303 (618)
Q Consensus 231 ~dlQNkN-~EL~kQiEI-cqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggA--a---ANAVRdyqrq~~eLneEk 303 (618)
.+|=|+. -||-||+-| |-|---+|.++...-+. +-.....|-+.-.+-|. + -....+|+.++.+|..++
T Consensus 61 ~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~----~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~ 136 (189)
T PF10211_consen 61 EELYSQCFDELIRQVTIDCPERGLLLLRVRDEYRM----TLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEK 136 (189)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444432 479999999 99999999888765332 22233333333333221 1 122668899999999999
Q ss_pred hhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHH
Q 007087 304 KTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRL 359 (618)
Q Consensus 304 ~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKL 359 (618)
..|+.+++..+.-.- .+... .+...-.-.|.|-+|.-||.-..++|++.|
T Consensus 137 ~~L~~~~~~l~~~~e---~~ek~---~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 137 EELEKQVQELKNKCE---QLEKR---EEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999976554432 22110 000112345777888888888888887776
No 111
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=81.42 E-value=40 Score=39.11 Aligned_cols=84 Identities=35% Similarity=0.512 Sum_probs=52.4
Q ss_pred HHHHHhch--hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHH
Q 007087 276 EEAVLAGG--AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQ 353 (618)
Q Consensus 276 EEavLAgg--AaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmq 353 (618)
|.-||-|. |+--|--..+.|+.+|+||.+++..|+--|+-- .+|..|--||.-| -+||-.-||+
T Consensus 337 E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~-----------~~~~e~ddiPmAq---RkRFTRvEMa 402 (832)
T KOG2077|consen 337 EKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK-----------AKDDEDDDIPMAQ---RKRFTRVEMA 402 (832)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hcccccccccHHH---HhhhHHHHHH
Confidence 55666663 444454556777778888877777666444332 3344444468776 6899999999
Q ss_pred HH-HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 007087 354 QL-RDRLAITERTAKSEAQLKEKYHLRLKVLEESLR 388 (618)
Q Consensus 354 rL-rdKLAiaERtAkaEaQLKeK~klRLk~lEe~Lk 388 (618)
|. -|+ ..|+-||--|+|.+|
T Consensus 403 RVLMeR---------------NqYKErLMELqEavr 423 (832)
T KOG2077|consen 403 RVLMER---------------NQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHH---------------hHHHHHHHHHHHHHh
Confidence 84 222 246666666666554
No 112
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.21 E-value=0.57 Score=52.19 Aligned_cols=156 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH---HHHHhHHHHHHhhh
Q 007087 184 ELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI---CQEENKILDKMHRQ 260 (618)
Q Consensus 184 elk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI---cqEEnkiLdk~hRQ 260 (618)
.+-.++.++..|++++.- +|.++.+.+-.+. ..-.-|.+|+-+|.+|...-+. ++.|..+| |.
T Consensus 240 ~~~~l~~ql~~L~~el~~-------~e~~~~d~~~~~e---~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~l----R~ 305 (713)
T PF05622_consen 240 ELADLRAQLRRLREELER-------LEEQRDDLKIELE---ELEKEIDELRQENEELQAEAREARALRDELDEL----RE 305 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HH
Confidence 334445555556555432 3444444432221 2223578889999988855444 67787887 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-------hhHHHHHhhhhhhhhhhhhhhhcccccCCC
Q 007087 261 KVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEER-------KTLDRELARAKVTANRVATVVANEWKDAND 333 (618)
Q Consensus 261 KvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk-------~tLerELARaKv~ANRVA~vvAnEWKD~nd 333 (618)
+...+.||..+|....+=+.. +-||++++.+|.+.. ..||.||.++...-..+ -..|-.+.
T Consensus 306 ~a~r~~klE~~ve~YKkKLed-------~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~ql-----e~~k~qi~ 373 (713)
T PF05622_consen 306 KADRADKLENEVEKYKKKLED-------LEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQL-----EEYKKQIQ 373 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHH
Confidence 777778888777665554432 568888887777754 57888997654322111 22222222
Q ss_pred CccchhhHHHHhhh--hHHHHHHHHHHHHHhHHhh
Q 007087 334 KVMPVKQWLEERRF--LQGEMQQLRDRLAITERTA 366 (618)
Q Consensus 334 kVmPVKqWLEErRf--lQGEmqrLrdKLAiaERtA 366 (618)
. +..+.|-+.++. +.-|+.+|++++..+++..
T Consensus 374 e-Le~~l~~~~~~~~~l~~e~~~L~ek~~~l~~ek 407 (713)
T PF05622_consen 374 E-LEQKLSEESRRADKLEFENKQLEEKLEALEEEK 407 (713)
T ss_dssp -----------------------------------
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 345555555554 6788999999998776553
No 113
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=80.60 E-value=77 Score=36.17 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=72.6
Q ss_pred CCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHH
Q 007087 168 DDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEIC 247 (618)
Q Consensus 168 DddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIc 247 (618)
|++.||-...=+-++.-.-..-.+|+.|+..|+-|+-.+++-+. +.++ ++.-.+|=.-..+=-|+.+-.+++|+--
T Consensus 249 ~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~---i~~l~ek~r~l~~D~nk~~~~~~~mk~K 324 (622)
T COG5185 249 DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMK-ISQK---IKTLREKWRALKSDSNKYENYVNAMKQK 324 (622)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456655555555555555556889999988887765543221 1111 1111122111222235555555665543
Q ss_pred HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH-------HHHHHHHHHHHhhHHHHHhhh
Q 007087 248 QEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY-------QRKVQEMNEERKTLDRELARA 313 (618)
Q Consensus 248 qEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdy-------qrq~~eLneEk~tLerELARa 313 (618)
-++.- --+++|+-.|.+-||-|.+--+---.+|.- -.+|.+||.|+-.|.|||-+-
T Consensus 325 ~~~~~----------g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i 387 (622)
T COG5185 325 SQEWP----------GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI 387 (622)
T ss_pred HHhcc----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33221 224666667777777666544333333322 357899999999999999554
No 114
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.43 E-value=20 Score=33.04 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=38.1
Q ss_pred cCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 007087 66 HGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTE 115 (618)
Q Consensus 66 hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~ 115 (618)
.+..|-.-.+.+|+..||-++.|+...+.||..|- ..||.+-+|+-.
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~---~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELASLQEELARLE---AERDELREEIVK 55 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45678888899999999999999999999999984 456666555544
No 115
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=80.14 E-value=22 Score=31.09 Aligned_cols=68 Identities=15% Similarity=0.333 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 007087 241 MKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDR 308 (618)
Q Consensus 241 ~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLer 308 (618)
.-++++..++-++|++||+--...+.++.+.+..|+..+..--.--+.+..|-.|+..+...+..||.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888999999999999999999999999998888877766678889998888888888887764
No 116
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.91 E-value=1.5e+02 Score=35.97 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=51.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHhhHH
Q 007087 232 DLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGA----AANAVRDYQRKVQEMNEERKTLD 307 (618)
Q Consensus 232 dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggA----aANAVRdyqrq~~eLneEk~tLe 307 (618)
.|||+.++|.-|....|+-..-+.-=-||---|+|-++..+.+||.++-|--. ..-++|+.--.+.+++++.-|+-
T Consensus 110 iLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl 189 (1265)
T KOG0976|consen 110 ILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKL 189 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Confidence 47777777777777777766666666678888999999999999988776521 12345544444444444444444
Q ss_pred HHHh
Q 007087 308 RELA 311 (618)
Q Consensus 308 rELA 311 (618)
.|.+
T Consensus 190 ~e~~ 193 (1265)
T KOG0976|consen 190 AEAN 193 (1265)
T ss_pred HHHH
Confidence 4443
No 117
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.94 E-value=20 Score=35.15 Aligned_cols=49 Identities=31% Similarity=0.562 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhh
Q 007087 262 VAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRV 320 (618)
Q Consensus 262 vaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRV 320 (618)
-+|-.++...+.+||.-|+ .+|++.+.|.+++..-+.|++|.++.||.+
T Consensus 123 ~~~~~~~e~~i~~Le~ki~----------el~~~~~~~~~~ke~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 123 EAELKELESEIKELEMKIL----------ELQRQAAKLKEKKEAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566667777776655 566666667777777777777777777753
No 118
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=78.57 E-value=70 Score=31.36 Aligned_cols=55 Identities=27% Similarity=0.406 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 92 AQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 92 A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
-..||..+|-.+...+|.+.++..|-..+.|-|...+..++.....++-..-.|-
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~ 86 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999988887777665544443
No 119
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=78.51 E-value=1.9e+02 Score=36.23 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHhhhhhhhhhhh
Q 007087 81 EVRDKDRELGEAQAEIKALRLSERLREKAV-----EELTEELSKVEEKLKLAENLIETKNLEIKKI 141 (618)
Q Consensus 81 ~lr~KdrEL~~A~aEIkaLr~se~~kdKAv-----eel~~el~kldEKLk~tE~lle~knLEiKkl 141 (618)
.+.+-+++|.++-.+++..+..-.-+++|+ .+..+.+....++++.++.+|-++--|++-+
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555444433222111134333 3334444455555555555555554444433
No 120
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.25 E-value=12 Score=35.64 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=36.8
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
-||..+...--+-.-.|-.+..++..|+..-..+...|.+|+.++..+.++++-.+..|..|+.-+-.|+||==
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445556667777888888888888999999999999999999999999999988888888844
No 121
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=78.15 E-value=75 Score=31.46 Aligned_cols=27 Identities=37% Similarity=0.230 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhh
Q 007087 293 QRKVQEMNEERKTLDRELARAKVTANR 319 (618)
Q Consensus 293 qrq~~eLneEk~tLerELARaKv~ANR 319 (618)
+.++.++..+.......|.+..+.|--
T Consensus 185 ~~~i~~~~~~l~~a~~~l~~~~I~AP~ 211 (334)
T TIGR00998 185 QPAVQEAKERLKTAWLALKRTVIRAPF 211 (334)
T ss_pred hHHHHHHHHHHHHHHHHhhCcEEEcCC
Confidence 344555666666666677776666653
No 122
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=77.92 E-value=83 Score=35.01 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=44.8
Q ss_pred CCCchhHHHHHHHHHHHHHHhhh---h-----cccccccchhH----------HHHHHHHhHhhhhhHHHHHHHHHhHHH
Q 007087 506 EDSVPGVLYDLLQKEVVALRKAG---H-----EKDQSLKDKDD----------AIEILAKKVDTLTKAMEVEAKKMRREV 567 (618)
Q Consensus 506 ~D~Vsg~LYD~LQKEVi~LRKa~---~-----eKdqsLkdKdd----------aIeML~KKVdtLtKamEVEaKKmrREv 567 (618)
-+.-+|-++|.+-.|+-.++.-- + -|++..+|--= --+-|-.-+..||.----|.--+|.|.
T Consensus 254 ~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqEl 333 (455)
T KOG3850|consen 254 PYHSQGAALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQEL 333 (455)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56677888888887765554321 1 23333332110 123344556677777778888999999
Q ss_pred HHhHHHHHHh
Q 007087 568 AAMEKEVAAM 577 (618)
Q Consensus 568 aa~EKEvaa~ 577 (618)
|.||--||--
T Consensus 334 asmeervaYQ 343 (455)
T KOG3850|consen 334 ASMEERVAYQ 343 (455)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 123
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=77.69 E-value=1.3e+02 Score=34.11 Aligned_cols=170 Identities=25% Similarity=0.344 Sum_probs=101.7
Q ss_pred HHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh
Q 007087 61 FMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKK 140 (618)
Q Consensus 61 ~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKk 140 (618)
++|-+-.-||+-+=|+.=|..+.-|-+||...+.+.. +-++.-++.++.+.++|.++..=.+......+...-+
T Consensus 68 ilNVlG~~d~~pDPLsPgE~~l~~Kl~eLE~e~k~d~---v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q--- 141 (508)
T PF00901_consen 68 ILNVLGTGDEPPDPLSPGEQGLQRKLKELEDEQKEDE---VREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQ--- 141 (508)
T ss_pred HHHhccCCCCCCCCCCHhHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH---
Confidence 4555555777777789999999999999988776543 2333344455555555555543222222111111111
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHH
Q 007087 141 INDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 220 (618)
Q Consensus 141 lndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v 220 (618)
++.+=..|++=++..+.|...|+.=.+||-+ |...
T Consensus 142 ---------------------------------~~~LekAl~~~~~i~~~E~~~l~~L~~AL~k------------E~~~ 176 (508)
T PF00901_consen 142 ---------------------------------IEILEKALKSYGKIVKEENKQLDRLARALQK------------ESRE 176 (508)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHh
Confidence 1222223455566666676666666666532 3334
Q ss_pred HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhchhhHHH
Q 007087 221 QVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE--LEEAVLAGGAAANA 288 (618)
Q Consensus 221 ~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E--LEEavLAggAaANA 288 (618)
++..+. .||.+.-++..-|..-||+-++ -|+---|-|+--++..|.| -||.=+-|.++|++
T Consensus 177 Rt~dE~-~mv~~yr~ki~aL~~aIe~Er~------~m~EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~ 239 (508)
T PF00901_consen 177 RTQDER-KMVEEYRQKIDALKNAIEVERE------GMQEEAIQEIADMSAEVLEHAAEEVPLVGAGVATG 239 (508)
T ss_pred ccHHHH-HHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHhcccHHHHHHHhhhCCcccHHHHHH
Confidence 555554 5889999999999988887442 2344457778888888888 56665666555555
No 124
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.16 E-value=1.4e+02 Score=34.85 Aligned_cols=89 Identities=28% Similarity=0.442 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH--------------HHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 007087 237 NQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVR--------------ELEEAVLAGGAAANAVRDYQRKVQEMNEE 302 (618)
Q Consensus 237 N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~--------------ELEEavLAggAaANAVRdyqrq~~eLneE 302 (618)
-..|++|.+..+-+...+ |+ |++++.++++ +=||++|--.||-- --|-.+|-+|+.|
T Consensus 45 K~~Lkqq~eEleaeyd~~----R~---Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE--~~yl~kI~elene 115 (772)
T KOG0999|consen 45 KEDLKQQLEELEAEYDLA----RT---ELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKE--EYYLQKILELENE 115 (772)
T ss_pred HHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 345566666666665554 33 4455544443 34777776555443 3689999999999
Q ss_pred HhhHHHHHhhhhhhhhhhhhhhhcccccCCCCc
Q 007087 303 RKTLDRELARAKVTANRVATVVANEWKDANDKV 335 (618)
Q Consensus 303 k~tLerELARaKv~ANRVA~vvAnEWKD~ndkV 335 (618)
.+.+.-||++++.---|++.|+ ...++.|.-|
T Consensus 116 LKq~r~el~~~q~E~erl~~~~-sd~~e~~~~~ 147 (772)
T KOG0999|consen 116 LKQLRQELTNVQEENERLEKVH-SDLKESNAAV 147 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhcchhh
Confidence 9999999999999888887775 5566665443
No 125
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=77.07 E-value=1.5e+02 Score=34.45 Aligned_cols=103 Identities=27% Similarity=0.280 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHH
Q 007087 85 KDRELGEAQAEIKALRLSERLREKAVEELTEELSKV--EEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRV 162 (618)
Q Consensus 85 KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kl--dEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRv 162 (618)
.+|+|++.-.||+.--.+-....|-+-+.+.+.+|. .+|++..-++|.+--.||--| .+=+-.||+++=.|
T Consensus 20 LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~L-------tkRsk~aE~afl~v 92 (629)
T KOG0963|consen 20 LQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNL-------TKRSKFAEAAFLDV 92 (629)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHH
Confidence 345555555555544444444455566667777765 456666666666666666554 34456788889888
Q ss_pred hhhccCC-CCChhHHhhhccHHHHHHHHHHHHH
Q 007087 163 HAAQKDD-DMPPIEAILAPLEAELKLARQEIAK 194 (618)
Q Consensus 163 Ha~QKDd-dmppieaiiApLeAelk~~r~Ei~k 194 (618)
+--=.|- |..|+.+-++|+--.++.+--|+..
T Consensus 93 ye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~ 125 (629)
T KOG0963|consen 93 YEKLIEAPDPVPLLASAAELLNKQQKASEENEE 125 (629)
T ss_pred HHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHH
Confidence 8776664 5667777777766555553333333
No 126
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.68 E-value=1.7e+02 Score=34.89 Aligned_cols=130 Identities=23% Similarity=0.282 Sum_probs=92.2
Q ss_pred hhhhHHHhhhhHHHHHHHHHHHHHHhhHHH---------HHHHHHHHHHH--------------HHHHHHHHHHhHHHhh
Q 007087 76 NRLENEVRDKDRELGEAQAEIKALRLSERL---------REKAVEELTEE--------------LSKVEEKLKLAENLIE 132 (618)
Q Consensus 76 nRLeN~lr~KdrEL~~A~aEIkaLr~se~~---------kdKAveel~~e--------------l~kldEKLk~tE~lle 132 (618)
.-||.-+..--+|-++++.|||.||-.-+. ||..|..|-.| ++||.-|.+..|++++
T Consensus 412 a~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~ 491 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEE 491 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 345666666778888999999988754432 55666666444 5677788888999999
Q ss_pred hhhhhhhhhhhHH---HHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhH
Q 007087 133 TKNLEIKKINDEK---RASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSK 209 (618)
Q Consensus 133 ~knLEiKklndEK---K~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsK 209 (618)
.+|.-|++|..|- |..|++--+-|-+++- -|--+.|+++..+.+...++-+.-+|+.-..+-
T Consensus 492 K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E---------------~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 492 KKGELITKLQSEENKLKSILRDKEETEKLLQE---------------TIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999998774 2345555555554432 345677888877777777777777777777777
Q ss_pred HHHHHHHHHHH
Q 007087 210 EAALLEAERTV 220 (618)
Q Consensus 210 EaALleaeR~v 220 (618)
++++.+|-.-+
T Consensus 557 qat~d~a~~Dl 567 (961)
T KOG4673|consen 557 QATNDEARSDL 567 (961)
T ss_pred HHhhhhhhhhH
Confidence 77777776544
No 127
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.44 E-value=1.3e+02 Score=33.36 Aligned_cols=191 Identities=18% Similarity=0.297 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhh-----hhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHH
Q 007087 113 LTEELSKVEEKLKLAENLIETKNLE-----IKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 187 (618)
Q Consensus 113 l~~el~kldEKLk~tE~lle~knLE-----iKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~ 187 (618)
+..++..+.+++..+..+|.+..++ +..|+ ++=+.|..++--|..-+.. =+..+|-+...|.-++...+.
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~-~~Id~Lyd~lekE~~A~~~----vek~~~~l~~~l~~~~e~~~~ 328 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQ-ERIDQLYDILEREVKARKY----VEKNSDTLPDFLEHAKEQNKE 328 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHH
Confidence 3455556666666655555543322 22222 2334566666666432221 123477889999999999999
Q ss_pred HHHHHHHhhhc----------hHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH-HHHH
Q 007087 188 ARQEIAKLQDD----------NKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK-ILDK 256 (618)
Q Consensus 188 ~r~Ei~kLqdd----------nkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk-iLdk 256 (618)
...|+..|+.. .+.++.-++.=+..+.... ...-..+....+++.+..++.++++...++-. |-+.
T Consensus 329 l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~---~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~ 405 (569)
T PRK04778 329 LKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT---ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 6777766666666655443 33444555578888999999999877666554 5555
Q ss_pred HhhhHHHHH------HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 257 MHRQKVAEV------EKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 257 ~hRQKvaEV------EKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELAR 312 (618)
+....-.|. .++..++.++...|.-..-.- .=.+|...+.+...+...|..+|.+
T Consensus 406 l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpg-ip~~y~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 406 LQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPG-LPEDYLEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555444443 444555555555444331000 1346777777888888888888876
No 128
>PHA03161 hypothetical protein; Provisional
Probab=76.37 E-value=8.7 Score=37.17 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=47.2
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA 281 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLA 281 (618)
--.+++|....|--+|+.-+.|--+|-+.++-||..+|+|+--|.||.+-|-.
T Consensus 55 ~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ 107 (150)
T PHA03161 55 KQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHF 107 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888999999999999999999999999999999999999887653
No 129
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.17 E-value=74 Score=30.41 Aligned_cols=106 Identities=28% Similarity=0.440 Sum_probs=65.2
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
-.||. --|+..+++-...|..+...+.........-.+=+.++..+..+...+.... |..= +
T Consensus 21 ~EDP~----~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A---l~~g-----------~ 82 (221)
T PF04012_consen 21 AEDPE----KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA---LAAG-----------R 82 (221)
T ss_pred hcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcC-----------C
Confidence 37888 4578888888888888888888877777766666666666666666554322 2111 1
Q ss_pred HhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHH
Q 007087 147 ASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDR 204 (618)
Q Consensus 147 ~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALer 204 (618)
+-||- +| |.+.+ .++..++.|+..+..+...+.+|..++..|+.
T Consensus 83 edLAr----~a-l~~k~---------~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 83 EDLAR----EA-LQRKA---------DLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHH----HH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11211 11 22211 24556677777777777777777666665554
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.89 E-value=57 Score=36.69 Aligned_cols=100 Identities=26% Similarity=0.305 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 007087 184 ELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVA 263 (618)
Q Consensus 184 elk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKva 263 (618)
+|...|+....+-...+.|+.....=+++-..+|+++ ..+|++.-++.+|+..-+|+|+.|-+-.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~----------~q~q~k~~k~~kel~~~~E~n~~l~knq----- 412 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL----------QQLQTKLKKCQKELKEEREENKKLIKNQ----- 412 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhH-----
Confidence 6666666555555555544443333333333333322 3567777777777777778898774321
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhH
Q 007087 264 EVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTL 306 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tL 306 (618)
--..+++.++||..- -++..|+-++++|+|.++-|
T Consensus 413 --~vw~~kl~~~~e~~~------~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 413 --DVWRGKLKELEEREK------EALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred --HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhH
Confidence 223344555555432 24667888889998888765
No 131
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.88 E-value=2.1e+02 Score=35.38 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=31.5
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELT 114 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~ 114 (618)
.|+..|-+++..++||.+...||+.|..+-.-=...-.||.
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~ 718 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLE 718 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999887654333333333
No 132
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.86 E-value=42 Score=32.06 Aligned_cols=76 Identities=25% Similarity=0.328 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhhH
Q 007087 183 AELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK-ILDKMHRQK 261 (618)
Q Consensus 183 Aelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQK 261 (618)
..|..++.++..|+..++-|+--++-|++.+.....-+. -||=++--+..++..+++||+ ++++.-..|
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~----------~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ----------ALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555544432221111 122233344456666777777 666666666
Q ss_pred HHHHHHH
Q 007087 262 VAEVEKL 268 (618)
Q Consensus 262 vaEVEKL 268 (618)
-.|.+++
T Consensus 186 ~~eAe~m 192 (194)
T PF08614_consen 186 AQEAERM 192 (194)
T ss_dssp HHHHHH-
T ss_pred HHHHHHh
Confidence 6666554
No 133
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=75.60 E-value=1.2e+02 Score=32.31 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=5.1
Q ss_pred hcCCCchh
Q 007087 65 LHGSDPVK 72 (618)
Q Consensus 65 ~hgsdPv~ 72 (618)
|.++||-.
T Consensus 128 ~~~~dP~~ 135 (498)
T TIGR03007 128 YEDKDPEL 135 (498)
T ss_pred eeCCCHHH
Confidence 46677754
No 134
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=75.59 E-value=1.8e+02 Score=34.66 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=23.7
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKV 120 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kl 120 (618)
..++..++..+.........+..++..+.......+..+.++...+..+
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQAL 577 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666655555555555555544433333333344444433333
No 135
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=75.43 E-value=31 Score=29.77 Aligned_cols=87 Identities=23% Similarity=0.421 Sum_probs=65.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH-------------------------HH--hc-
Q 007087 231 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA-------------------------VL--AG- 282 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa-------------------------vL--Ag- 282 (618)
+++..+.+.|..+|+.++....-| ++...|++.+-.++..|..+ |+ -|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l----~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~ 77 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKL----EAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGT 77 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecC
Confidence 456777778888888888887777 67788888888888888743 22 22
Q ss_pred h-----hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhh
Q 007087 283 G-----AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVA 321 (618)
Q Consensus 283 g-----AaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA 321 (618)
| ....|...+.+++..++.+...|+.++.......+.+-
T Consensus 78 ~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 78 GVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33478999999999999999999998877666555443
No 136
>PF15294 Leu_zip: Leucine zipper
Probab=75.34 E-value=35 Score=35.80 Aligned_cols=83 Identities=24% Similarity=0.282 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccH
Q 007087 103 ERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLE 182 (618)
Q Consensus 103 e~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLe 182 (618)
..+..+-|..|.+|..++.+||+..|.+....--|-++|+..=++.=. .++...- +.+..-+..++++++.-+|-|.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--~~~~~~~-k~~~~~~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--EQGDQKG-KKDLSFKAQDLSDLENKMAALK 203 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhc-cccccccccchhhHHHHHHHHH
Confidence 356678888999999999999999998887765555555443331111 1111111 1223345556666666666665
Q ss_pred HHHHHH
Q 007087 183 AELKLA 188 (618)
Q Consensus 183 Aelk~~ 188 (618)
.++..+
T Consensus 204 ~e~ek~ 209 (278)
T PF15294_consen 204 SELEKA 209 (278)
T ss_pred HHHHHH
Confidence 554444
No 137
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=75.08 E-value=4.4 Score=39.35 Aligned_cols=53 Identities=34% Similarity=0.557 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKS 368 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAka 368 (618)
+-||+.+++.--|..-.||.|| .|+--|.-|.|||||.+ |-.|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL--------------------------------dEKE~L~~~~QRLkDE~----RDLKq 45 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL--------------------------------DEKENLREEVQRLKDEL----RDLKQ 45 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHCH----------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--------------------------------HHHHHHHHHHHHHHHHH----HHHHH
Confidence 5689999999999999999998 57777999999999999 78888
Q ss_pred HHHHHHHHH
Q 007087 369 EAQLKEKYH 377 (618)
Q Consensus 369 EaQLKeK~k 377 (618)
|..++||++
T Consensus 46 El~V~ek~~ 54 (166)
T PF04880_consen 46 ELIVQEKLR 54 (166)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 888888775
No 138
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=74.37 E-value=2e+02 Score=34.44 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhHHhhh
Q 007087 347 FLQGEMQQLRDRLAITERTAK 367 (618)
Q Consensus 347 flQGEmqrLrdKLAiaERtAk 367 (618)
.+|-|+++|+++++..|-...
T Consensus 736 ~~qeE~~~l~~r~~~le~e~r 756 (961)
T KOG4673|consen 736 AAQEEADTLEGRANQLEVEIR 756 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999888775443
No 139
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.18 E-value=1.1e+02 Score=31.39 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=12.0
Q ss_pred CChhHHhhhccHHHHHHHHHHH
Q 007087 171 MPPIEAILAPLEAELKLARQEI 192 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei 192 (618)
|..+.+.|+-|++.|......+
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666665544433
No 140
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=74.06 E-value=1.6e+02 Score=33.22 Aligned_cols=159 Identities=26% Similarity=0.376 Sum_probs=95.4
Q ss_pred HHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHH----HHHHhhhchH
Q 007087 125 KLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQ----EIAKLQDDNK 200 (618)
Q Consensus 125 k~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~----Ei~kLqddnk 200 (618)
+.+|.+--+-.-|+.||..||---||--.||-+ +| +||--+.+|. |+.|-|--|-
T Consensus 352 kkiEdLQRqHqRELekLreEKdrLLAEETAATi-----------------SA----IEAMKnAhrEEmeRELeKsqSvns 410 (593)
T KOG4807|consen 352 KKIEDLQRQHQRELEKLREEKDRLLAEETAATI-----------------SA----IEAMKNAHREEMERELEKSQSVNS 410 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-----------------HH----HHHHHHHHHHHHHHHHHhhhcccc
Confidence 456777778888999999999877766666542 22 2332222332 4445554444
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH-HhhhhHHhhhhhHHHHHHHH-------HHHHHhHHHHHHhhhHHHHHHHHHHHH
Q 007087 201 ALDRLTKSKEAALLEAERTVQVALA-KASMVDDLQNKNQELMKQIE-------ICQEENKILDKMHRQKVAEVEKLTQTV 272 (618)
Q Consensus 201 ALerltKsKEaALleaeR~v~~Ala-kA~~V~dlQNkN~EL~kQiE-------IcqEEnkiLdk~hRQKvaEVEKLsqTv 272 (618)
..|.|-|.--..|...+|.+++--+ +.-.|-+ |--|+.++| .||.||.-|-. |-|-.. -+|..+|
T Consensus 411 dveaLRrQyleelqsvqRELeVLSEQYSQKCLE----nahLaqalEaerqaLRqCQrEnQELna-HNQELn--nRLaaEI 483 (593)
T KOG4807|consen 411 DVEALRRQYLEELQSVQRELEVLSEQYSQKCLE----NAHLAQALEAERQALRQCQRENQELNA-HNQELN--NRLAAEI 483 (593)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHh--hHHHHHH
Confidence 4555555555556666666654322 2333322 334555544 49999986643 334222 4678888
Q ss_pred HHHHHHHHhch-----hhHHH---------HHHHHHHHHHHHHHHhhHHHHHh
Q 007087 273 RELEEAVLAGG-----AAANA---------VRDYQRKVQEMNEERKTLDRELA 311 (618)
Q Consensus 273 ~ELEEavLAgg-----AaANA---------VRdyqrq~~eLneEk~tLerELA 311 (618)
-.|...|-.-| --||. +|.-.+.++=|..|+.-|..||-
T Consensus 484 trLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQ 536 (593)
T KOG4807|consen 484 TRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQ 536 (593)
T ss_pred HHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 88877665222 22232 67778888999999999999984
No 141
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.06 E-value=1.1e+02 Score=31.45 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 007087 241 MKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARA 313 (618)
Q Consensus 241 ~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARa 313 (618)
.+-++..+.+-.=|+.--+|=-.||-++..-+..+|+.+ .++...+..++|+..++.+++...+|+.||+++
T Consensus 44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 44 NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444555677778888888888888 556677889999999999999999999999765
No 142
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.91 E-value=27 Score=35.13 Aligned_cols=144 Identities=23% Similarity=0.365 Sum_probs=69.9
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
++--.++|+-.--+||-.|--..+-+-..+..++..+.++.-.++. +..=++-.+|.++..+.. ..+|
T Consensus 18 QLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~---K~~ELE~ce~ELqr~~~E-------a~lL-- 85 (202)
T PF06818_consen 18 QLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT---KQLELEVCENELQRKKNE-------AELL-- 85 (202)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hhHhHHHhHHHHHHHhCH-------HHHh--
Confidence 3444455555555666666666666666666666666665543322 222222222222221111 1122
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhch------------hhHHHHHHH-HHHHHHHHHHHhhHHHHHhhhhhhhhhhhhh
Q 007087 257 MHRQKVAEVEKLTQTVRELEEAVLAGG------------AAANAVRDY-QRKVQEMNEERKTLDRELARAKVTANRVATV 323 (618)
Q Consensus 257 ~hRQKvaEVEKLsqTv~ELEEavLAgg------------AaANAVRdy-qrq~~eLneEk~tLerELARaKv~ANRVA~v 323 (618)
|.| |-+|.+++.+|.+.+-..| .-|-+-+.. ..-+..|..+.-.|-.||+.-+--.++-+.-
T Consensus 86 --rek---l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 86 --REK---LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred --hhh---hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 443 3445555555555544321 111111111 2224556666677777777666666655555
Q ss_pred hhcc---cccCCCCccc
Q 007087 324 VANE---WKDANDKVMP 337 (618)
Q Consensus 324 vAnE---WKD~ndkVmP 337 (618)
+..| |.++-|||++
T Consensus 161 Fe~ER~~W~eEKekVi~ 177 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIR 177 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4443 7777777765
No 143
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.76 E-value=77 Score=29.48 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHH
Q 007087 181 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAER 218 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR 218 (618)
++.++....+.+..+++....++......+..+...+.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555544444444443
No 144
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.85 E-value=2.2e+02 Score=34.41 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 007087 284 AAANAVRDYQRKVQEMNEERK 304 (618)
Q Consensus 284 AaANAVRdyqrq~~eLneEk~ 304 (618)
.-||+..+...++++|+++.+
T Consensus 845 ~la~e~~~ieq~ls~l~~~~k 865 (970)
T KOG0946|consen 845 NLANELKLIEQKLSNLQEKIK 865 (970)
T ss_pred chhhHHHHHHHHHHHHHHHhh
Confidence 455666665666655554443
No 145
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.78 E-value=44 Score=34.71 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=44.2
Q ss_pred hHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh
Q 007087 60 EFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIK 139 (618)
Q Consensus 60 ~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiK 139 (618)
.|+..+..+++..-++..++.++..-..|-.++..|++.|......=++.+.++..+...+++.-...=...-...+++-
T Consensus 30 ~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 30 EFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp ------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444556666666677777766666666666666666555555555555555555555443333333333344444
Q ss_pred hhhhHHHHhHHHHHH
Q 007087 140 KINDEKRASMAAQFA 154 (618)
Q Consensus 140 klndEKK~alAAQfA 154 (618)
...+|.- .+.+|+.
T Consensus 110 ~~~~e~~-sl~~q~~ 123 (314)
T PF04111_consen 110 EFQEERD-SLKNQYE 123 (314)
T ss_dssp HHHHHHH-HHHHHHH
T ss_pred HHHHHHH-HHHHHHH
Confidence 4444443 5555543
No 146
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=72.58 E-value=2.4e+02 Score=34.67 Aligned_cols=207 Identities=16% Similarity=0.146 Sum_probs=103.3
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhH
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERL--REKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDE 144 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~--kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndE 144 (618)
.-|-.......|+..+.+-.+++.+++.+|.+++..... +.-...+|...+. .+...|....-++...++.
T Consensus 59 ~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~-------~~~~~L~~~q~~l~~~~~~ 131 (1109)
T PRK10929 59 ERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEIL-------QVSSQLLEKSRQAQQEQDR 131 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Confidence 334445555666666666666666777766665432200 1111344444444 4444444444444444443
Q ss_pred HHHhHHHH-------HHHHH---HHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHH---------------------
Q 007087 145 KRASMAAQ-------FAAEA---TLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIA--------------------- 193 (618)
Q Consensus 145 KK~alAAQ-------fAAEA---tLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~--------------------- 193 (618)
-++....+ ..|-. .+++...+.+.++-|--++...-|++|...+..++.
T Consensus 132 ~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~d 211 (1109)
T PRK10929 132 AREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSE 211 (1109)
T ss_pred hHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 32221111 22222 233333444555555445555555555444433322
Q ss_pred -------HhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHh-------hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 007087 194 -------KLQDDNKALDRLTKSKEAALLEAERTVQVALAKA-------SMVDDLQNKNQELMKQIEICQEENKILDKMHR 259 (618)
Q Consensus 194 -------kLqddnkALerltKsKEaALleaeR~v~~AlakA-------~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hR 259 (618)
.++....+|...+..| -+.++|.+++.|..-+ ..+.+....|++|..++....+...-|..-++
T Consensus 212 l~~~~~~~l~~~~~~Lq~~in~k--R~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~ 289 (1109)
T PRK10929 212 LAKKRSQQLDAYLQALRNQLNSQ--RQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQR 289 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333222 2233444444443221 12334445688888888777666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 007087 260 QKVAEVEKLTQTVRELEEAVLAG 282 (618)
Q Consensus 260 QKvaEVEKLsqTv~ELEEavLAg 282 (618)
+=......++|+.+-++|-|...
T Consensus 290 ~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 290 QAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677889999999999988754
No 147
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.56 E-value=2.5e+02 Score=34.78 Aligned_cols=219 Identities=20% Similarity=0.257 Sum_probs=100.1
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHhhhh----------hhhhhhh
Q 007087 79 ENEVRDKDRELGEAQAEIKALRLSERLREKAVEEL-------TEELSKVEEKLKLAENLIETK----------NLEIKKI 141 (618)
Q Consensus 79 eN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel-------~~el~kldEKLk~tE~lle~k----------nLEiKkl 141 (618)
|+..+.-.-+|..-.+||..+.-.-.-+++.|... ..++.++|-++.--|..|..- .-..++|
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl 305 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL 305 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence 33334444444444455554444444444444333 344555555555555555431 1123566
Q ss_pred hhHHHHhHHHHHHHHHHHHHHhhhc---cCCCCChhHHhhhccHHHHHHHHH----HHHHhhhchHHHHHHHhhHHHHHH
Q 007087 142 NDEKRASMAAQFAAEATLRRVHAAQ---KDDDMPPIEAILAPLEAELKLARQ----EIAKLQDDNKALDRLTKSKEAALL 214 (618)
Q Consensus 142 ndEKK~alAAQfAAEAtLRRvHa~Q---KDddmppieaiiApLeAelk~~r~----Ei~kLqddnkALerltKsKEaALl 214 (618)
...+|..-+++-++.+ |..+ -..++-.++.--.++|.+|+.-+| ++.-.-++++-.+|| |+-|.-
T Consensus 306 ~~~~k~i~~~kk~~~~-----~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rl---k~ea~~ 377 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRA-----LKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERL---KEEACK 377 (1141)
T ss_pred HHhhhhHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHH---HHHHhh
Confidence 6667766666666654 2111 122456667777778888877776 333333444333333 343333
Q ss_pred HHHHHHHH----------HHHH-hhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Q 007087 215 EAERTVQV----------ALAK-ASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGG 283 (618)
Q Consensus 215 eaeR~v~~----------Alak-A~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAgg 283 (618)
++...+.+ .|.. -....+++++...|..+|+..+..+.-| ..++.+.......+...+ .
T Consensus 378 ~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L----~~~i~s~~~~~~e~~~d~------~ 447 (1141)
T KOG0018|consen 378 EALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKL----AAKITSLSRSYEELKHDL------D 447 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcH------H
Confidence 33222211 1111 1123455555555555554444433322 122222222111111111 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 007087 284 AAANAVRDYQRKVQEMNEERKTLDRELARAKV 315 (618)
Q Consensus 284 AaANAVRdyqrq~~eLneEk~tLerELARaKv 315 (618)
.-.+-+.--..+..++|+|..-...+|-.|+.
T Consensus 448 ~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~ 479 (1141)
T KOG0018|consen 448 SLESLVSSAEEEPYELNEELVEVLDQLLDASA 479 (1141)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 22233333355666777777777777766554
No 148
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.38 E-value=2.5e+02 Score=34.72 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Q 007087 187 LARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVE 266 (618)
Q Consensus 187 ~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVE 266 (618)
.-+-....||.++--+++-++.+.-.+-+.+..+.. --.-++++.-.+.++++..+..++..|-|=+=.-+=-..++
T Consensus 408 ~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e---~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~ 484 (1200)
T KOG0964|consen 408 DTKEQENILQKEIEDLESELKEKLEEIKELESSINE---TKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIA 484 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778888888888888888888888877773 33346788888999999999988888766322222122233
Q ss_pred HHHHHHHHHHHHHHhc--hhhHHHHHHHHHHH
Q 007087 267 KLTQTVRELEEAVLAG--GAAANAVRDYQRKV 296 (618)
Q Consensus 267 KLsqTv~ELEEavLAg--gAaANAVRdyqrq~ 296 (618)
.+-+.|..-+-.+-++ ++.+|.+..-..=+
T Consensus 485 ~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~ 516 (1200)
T KOG0964|consen 485 NLEEDLSRAEKNLRATMNRSVANGIDSVRKIK 516 (1200)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 3333333333344433 35556655444333
No 149
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.98 E-value=17 Score=37.48 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=55.6
Q ss_pred cCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHH
Q 007087 66 HGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEK 145 (618)
Q Consensus 66 hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEK 145 (618)
.---|.+-++..+++.|......|.+.+.++..+......-.+-+++...+...+......++.-|+.-+.=|.-|.+|+
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 33578889999999888888888888888888887776666666666666666665555555555555444444455554
Q ss_pred H
Q 007087 146 R 146 (618)
Q Consensus 146 K 146 (618)
.
T Consensus 294 ~ 294 (344)
T PF12777_consen 294 E 294 (344)
T ss_dssp H
T ss_pred h
Confidence 3
No 150
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=71.95 E-value=1.2e+02 Score=30.73 Aligned_cols=122 Identities=20% Similarity=0.355 Sum_probs=65.7
Q ss_pred HHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHH-H----HHHhhhHHHHHH
Q 007087 192 IAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKI-L----DKMHRQKVAEVE 266 (618)
Q Consensus 192 i~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnki-L----dk~hRQKvaEVE 266 (618)
|.++.|-.+-|+..++-=+..|..+.+.+-.+++...-. +-+..++..+++-+++-... | +.+.|+=+.++.
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~---e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~ 95 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQL---ERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQ 95 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445555555555555555555554444443322 11222222222222222110 0 455677777778
Q ss_pred HHHHHHHHHHHHHHhchhhHHH----HHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 007087 267 KLTQTVRELEEAVLAGGAAANA----VRDYQRKVQEMNEERKTLDRELARAKVT 316 (618)
Q Consensus 267 KLsqTv~ELEEavLAggAaANA----VRdyqrq~~eLneEk~tLerELARaKv~ 316 (618)
.|..++..++..+-.-....-. +..-+.++.++...+..|.-..+-++++
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~ 149 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQ 149 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777655544433 5556778888888888776665555544
No 151
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=71.92 E-value=16 Score=32.03 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhh
Q 007087 266 EKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV 323 (618)
Q Consensus 266 EKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~v 323 (618)
..|.+-|..||.+|-.--...+....++..++.|+..+..|..||-.+.+-+|++-.+
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~ 68 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEA 68 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Confidence 5678888889988887766667779999999999999999999999988887765433
No 152
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=71.88 E-value=18 Score=38.26 Aligned_cols=123 Identities=22% Similarity=0.359 Sum_probs=81.9
Q ss_pred CCc-hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHHHHHHHH--HHHHHhHHHhh---h
Q 007087 68 SDP-VKVELNRLENEVRDKDRELGEAQAEIKALRLSER--------LREKAVEELTEELSKVE--EKLKLAENLIE---T 133 (618)
Q Consensus 68 sdP-v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~--------~kdKAveel~~el~kld--EKLk~tE~lle---~ 133 (618)
-|| |-+++.||-|+|..++..|.++|-||.|.+.+.- .|=+-+-+-++||.++- +|+--+|..|. +
T Consensus 171 lDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs 250 (330)
T KOG2991|consen 171 LDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKS 250 (330)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHh
Confidence 366 5688999999999999999999999999998754 35566777777777653 33333333322 2
Q ss_pred hhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHH
Q 007087 134 KNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRL 205 (618)
Q Consensus 134 knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerl 205 (618)
.+-|+|+-.+|=- . |--+-|+|+-..-+-|--|+-+|+-.|.+|..|..-+.-+-.+
T Consensus 251 ~seElkssq~eL~--------------d-fm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 251 QSEELKSSQEELY--------------D-FMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred hHHHHHHhHHHHH--------------H-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333332222211 1 3345567777777777889999999999998876554444333
No 153
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=71.39 E-value=48 Score=31.94 Aligned_cols=88 Identities=28% Similarity=0.453 Sum_probs=55.7
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHH--HHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH--
Q 007087 171 MPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKE--AALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI-- 246 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKE--aALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI-- 246 (618)
.|+-..+-++||++.+-+-.++.++|.+..++..-+.... .++.+.. .-+....+=..+.+.+-+.++..+.+.+
T Consensus 39 ~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~~~~~~~~~d~~-k~e~~~~~~~~~~~~~~k~~~~~~~~~~~~ 117 (170)
T COG2825 39 SPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRA-KAEAEIKKEKLVNAFNKKQQEYEKDLNRRE 117 (170)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555788899999999999999999999998887666522 2221111 1122222224677776666665555544
Q ss_pred HHHHhHHHHHHhh
Q 007087 247 CQEENKILDKMHR 259 (618)
Q Consensus 247 cqEEnkiLdk~hR 259 (618)
.+++.++++++.|
T Consensus 118 ~e~~~~~~~~i~~ 130 (170)
T COG2825 118 AEEEQKLLEKIQR 130 (170)
T ss_pred HHHHHHHHHHHHH
Confidence 5566667766655
No 154
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=71.16 E-value=1.4e+02 Score=31.22 Aligned_cols=159 Identities=26% Similarity=0.275 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHH
Q 007087 106 REKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAEL 185 (618)
Q Consensus 106 kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAel 185 (618)
.+.|-.+|..==.+...++.-++.+|+..+-.|++.+.|=. +|+ .-+|-+.|--...||.|.-.|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~-----------~L~----TYkD~EYPvK~vqIa~L~rql 129 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN-----------FLS----TYKDHEYPVKAVQIANLVRQL 129 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH----HHhhhhhhHHHHHHHHHHHHH
Confidence 44455555555556666777788888888888887766532 222 356777777777999999999
Q ss_pred HHHHHHHHHhhhchH--------HHHHHHhhHHHHHHH-HHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 186 KLARQEIAKLQDDNK--------ALDRLTKSKEAALLE-AERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 186 k~~r~Ei~kLqddnk--------ALerltKsKEaALle-aeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
...+..-.-=.|+-. -|++-...|...++. +-...+.++-.++ -..--+|+-++|+|+.+.++..=|+.
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l--~~~~~~N~~m~kei~~~re~i~el~e 207 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPAL--LQRTLENQVMQKEIVQFREEIDELEE 207 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888754332222211 122233333333333 3333444444433 33346788999999999999886665
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHh
Q 007087 257 MHRQKVAEVEKLTQTVRELEEAVLA 281 (618)
Q Consensus 257 ~hRQKvaEVEKLsqTv~ELEEavLA 281 (618)
--.+=-+||+.|+..+.+..|.|.+
T Consensus 208 ~I~~L~~eV~~L~~~~~~~Re~iF~ 232 (258)
T PF15397_consen 208 EIPQLRAEVEQLQAQAQDPREVIFA 232 (258)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhhH
Confidence 5556667888888887777776654
No 155
>PF13166 AAA_13: AAA domain
Probab=71.14 E-value=1.7e+02 Score=32.33 Aligned_cols=150 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHH---HHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHH
Q 007087 169 DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAAL---LEAERTVQVALAKASMVDDLQNKNQELMKQIE 245 (618)
Q Consensus 169 ddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaAL---leaeR~v~~AlakA~~V~dlQNkN~EL~kQiE 245 (618)
.+.+........+..+...+...+..+.+....+-..+..|-..+ .+.+.+.........+++++.+...+..+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~ 387 (712)
T PF13166_consen 308 ESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKID 387 (712)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHH----HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhh
Q 007087 246 ICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA----VRDYQRKVQEMNEERKTLDRELARAKVTANRV 320 (618)
Q Consensus 246 IcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANA----VRdyqrq~~eLneEk~tLerELARaKv~ANRV 320 (618)
-...+..-+. .+.....+.++.+.+..+...+-.-....+. +..-+..+..++.+...|+.++.....+++++
T Consensus 388 ~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~i 464 (712)
T PF13166_consen 388 NLKKEQNELK--DKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRI 464 (712)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 156
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=70.91 E-value=44 Score=33.62 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhcc
Q 007087 88 ELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQK 167 (618)
Q Consensus 88 EL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QK 167 (618)
.-.+|..++..|+.+-.--.+-=+.|..++..+..+...++...+.+.-|...+..+ +..||-+-+.|--+.|..--
T Consensus 55 k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e---l~~ar~~~~~ak~~L~~~~~ 131 (246)
T PF00769_consen 55 KRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEE---LEEAREDEEEAKEELLEVMS 131 (246)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 333444444444443333333333444444444444444444444455555544432 44555554444444444333
Q ss_pred CCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHH
Q 007087 168 DDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEIC 247 (618)
Q Consensus 168 DddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIc 247 (618)
-.-.||...+..|-+.+.-..-....-.--|..+-. .++. +.+-+ =+.++-.=.-||+++.+|...|+-.
T Consensus 132 ~~~~p~~~~v~~~~~~~~~~~~~~~~~~s~dl~~~~-~~~~----~sEee-----R~t~~EKnk~lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 132 APPPPPHHPVAEPDEGDEDENDEENSEYSADLETDG-DMKD----RSEEE-----RVTYAEKNKRLQEQLKELKSELEQL 201 (246)
T ss_dssp TTS--GGGS------------------EEEE---T--T--T----CGGGC--------HHHH-HHHHHHHHHHHHHHHTT
T ss_pred ccccccccCCCCCCCCCccccccccccccccccccc-cccc----hhHHH-----HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 335555555656532222111111000000100000 0000 00111 1223344467899999999999888
Q ss_pred HHHhH--HHHHHhhhHH
Q 007087 248 QEENK--ILDKMHRQKV 262 (618)
Q Consensus 248 qEEnk--iLdk~hRQKv 262 (618)
..++| -+|.+|.+-|
T Consensus 202 kde~k~T~~D~~h~en~ 218 (246)
T PF00769_consen 202 KDEEKQTQLDIIHAENV 218 (246)
T ss_dssp B-CCG--HHHHHHHHHH
T ss_pred hhhhccchhHHHHHHHH
Confidence 87777 6788887643
No 157
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.42 E-value=20 Score=33.20 Aligned_cols=59 Identities=27% Similarity=0.441 Sum_probs=46.7
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKALRLSE--RLREKAVEELTEELSKVEEKLKLAEN 129 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se--~~kdKAveel~~el~kldEKLk~tE~ 129 (618)
+..|+..|++++.....+.....+|++.|..+- .--...|++|..++..+.+||..+..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788888999998999999999999888643 33456688888888888888887765
No 158
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.21 E-value=71 Score=30.32 Aligned_cols=69 Identities=29% Similarity=0.415 Sum_probs=51.7
Q ss_pred hHHhhhcCCCc--hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 60 EFMTLLHGSDP--VKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 60 ~~~~~~hgsdP--v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~ 133 (618)
.+|.. ||.|= .+-.+..++.++.....+|.++...|+.|+-+ .+=+++|..++..+..+++..+...+.
T Consensus 6 ~Im~~-~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 6 KIMAE-NGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHH-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45654 88776 56777888888999999999999999999873 455777888888888777755444443
No 159
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=69.71 E-value=3e+02 Score=34.60 Aligned_cols=70 Identities=23% Similarity=0.428 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 367 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAk 367 (618)
.+--.+|++++..|..+|+-|+.-+.+..++=..+.-.+.++- -.-+.--+-|+|+++.+-+....+...
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~---------l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREK---------LSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------hhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5555788999999999999998888866665444433333332 011333467888888888777666554
No 160
>smart00338 BRLZ basic region leucin zipper.
Probab=69.31 E-value=39 Score=27.04 Aligned_cols=57 Identities=30% Similarity=0.303 Sum_probs=45.7
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 198 DNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 198 dnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
|.+-..|..+++++|--.=++..+-....-.-|.+|...|.+|..+++....|+..|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999888888888777777778888888888888888877777655
No 161
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.23 E-value=1.1e+02 Score=29.31 Aligned_cols=163 Identities=18% Similarity=0.298 Sum_probs=82.9
Q ss_pred HHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh----HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 007087 193 AKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMV----DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKL 268 (618)
Q Consensus 193 ~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V----~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKL 268 (618)
.++.|-.+-|+..++.=+..|..+...|-.+.+..... ++++....++.++.+.|-.-. =|-+.|.=..+...+
T Consensus 19 d~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~ 96 (221)
T PF04012_consen 19 DKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADL 96 (221)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555444433322 333344444444444432221 122234444444555
Q ss_pred HHHHHHHHHHHHhchhhH----HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHH
Q 007087 269 TQTVRELEEAVLAGGAAA----NAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEE 344 (618)
Q Consensus 269 sqTv~ELEEavLAggAaA----NAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEE 344 (618)
...+..|+..+-...... +.+...+.++.+|..++.+|---..++++... |..+..+-- .+.
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~-~~~~~~~~~---~~~---------- 162 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK-VNEALASFS---VSS---------- 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCC---ccc----------
Confidence 555555555554332222 44666777888888888777665555444332 122211111 111
Q ss_pred hhhhHHHHHHHHHHHHHhHHhhhhHHHHHH
Q 007087 345 RRFLQGEMQQLRDRLAITERTAKSEAQLKE 374 (618)
Q Consensus 345 rRflQGEmqrLrdKLAiaERtAkaEaQLKe 374 (618)
....+.++++|+...|-.+.+-..|.+
T Consensus 163 ---a~~~~er~e~ki~~~ea~a~a~~el~~ 189 (221)
T PF04012_consen 163 ---AMDSFERMEEKIEEMEARAEASAELAD 189 (221)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234567888888888888888877774
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=68.83 E-value=2.4e+02 Score=33.20 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh
Q 007087 181 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ 260 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQ 260 (618)
||..++.+-.|+..|+.+.++|..-...-+. +...++ .-+....+.|..++..|.-. -|+
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---------~~~~ek----~~~~~e~q~L~ekl~~lek~-------~re 416 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEE---------RYKQEK----DRLESEVQNLKEKLMSLEKS-------SRE 416 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH----HHHHHHHHHHHHHHHHHHHh-------hhh
Confidence 6899999999999999999888443322221 111222 23455666677776665332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 261 KVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 261 KvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELAR 312 (618)
.- ..+.+||.-+.+. ...+-+.+.++.-..+|.-++-.|||.
T Consensus 417 ~q-------eri~~LE~ELr~l---~~~A~E~q~~LnsAQDELvtfSEeLAq 458 (717)
T PF09730_consen 417 DQ-------ERISELEKELRAL---SKLAGESQGSLNSAQDELVTFSEELAQ 458 (717)
T ss_pred hH-------HHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2334444444322 222334455666667888888888864
No 163
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=68.32 E-value=1.9e+02 Score=31.79 Aligned_cols=120 Identities=24% Similarity=0.284 Sum_probs=58.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHhH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhH--
Q 007087 231 DDLQNKNQELMKQIEICQEENK--ILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTL-- 306 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnk--iLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tL-- 306 (618)
..|+.+..+|..-|........ ++.-+.|. -++.....+|++..- |.+-+-.|.++..++.+...++
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rt-----l~~e~~~~~L~~~~~----A~~~~~~~l~~~~e~~~~l~l~~~ 228 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRT-----LKKEIERQELEERPK----ALRHYIEYLRESGELQEQLELLKA 228 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776554443 33333443 222222344444433 2223334555554444444333
Q ss_pred -----HHHHhhhhhhhhhhhhh--------hhcccccCCCCc---cchhhHHHHhhhhHHHHHHHHHHH
Q 007087 307 -----DRELARAKVTANRVATV--------VANEWKDANDKV---MPVKQWLEERRFLQGEMQQLRDRL 359 (618)
Q Consensus 307 -----erELARaKv~ANRVA~v--------vAnEWKD~ndkV---mPVKqWLEErRflQGEmqrLrdKL 359 (618)
+.||.--|+-|.|+-.. ..|--.++.|.- |-..+--.|+-+++-||+.|+..|
T Consensus 229 ~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 229 EGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444443222 111112222210 223454568888888888888887
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.25 E-value=49 Score=32.86 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhh
Q 007087 68 SDPVKVELNRLENEVRDKDRELGEAQAEIKALR----LSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKIN 142 (618)
Q Consensus 68 sdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr----~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKkln 142 (618)
.-|+++-|-.||+++.+-..+|..+..+..... -.....+..+.+|.++...|.+.|..+.+.++..+.++..+.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999888888877755333 333445667777777777777777776666655444444433
No 165
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=67.69 E-value=25 Score=32.96 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=47.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHH
Q 007087 100 RLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRR 161 (618)
Q Consensus 100 r~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRR 161 (618)
++|+..|+++..++...+..+|-.|.-+|-.....--|+++.+..--..+..||..|-.-|.
T Consensus 12 ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~ 73 (131)
T PF11068_consen 12 IVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERL 73 (131)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 47999999999999999998888888777777777777776666666777788888764443
No 166
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=67.46 E-value=20 Score=33.23 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHhhcCCC
Q 007087 348 LQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSS 391 (618)
Q Consensus 348 lQGEmqrLrdKLAiaERtAkaEaQLKeK~klRLk~lEe~Lk~~~ 391 (618)
..-|=+.|+-|||..|-..+.-..|+..+..|+|.||-.|+...
T Consensus 23 WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER 66 (134)
T PF08232_consen 23 WEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQER 66 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678899999999999999999999999999999998763
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.62 E-value=91 Score=31.60 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHH
Q 007087 111 EELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQ 190 (618)
Q Consensus 111 eel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~ 190 (618)
+.+..+|..--+-+...+..|+.-..|+..|..||..- ..-||-||..-.. +|+||.-+++|....+.
T Consensus 14 ek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h-------~eeLrqI~~DIn~-----lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 14 EKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAH-------VEELRQINQDINT-----LENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 33344444444445556777888888889999999832 2349999874333 67777777777777777
Q ss_pred HHHHhhhchHH
Q 007087 191 EIAKLQDDNKA 201 (618)
Q Consensus 191 Ei~kLqddnkA 201 (618)
.|..+++...-
T Consensus 82 ~i~r~~eey~~ 92 (230)
T PF10146_consen 82 KIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
No 168
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=66.11 E-value=19 Score=40.06 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=17.6
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
+.+-|++.-||.|||+..+.|..+|.+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~sa 97 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNK 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888888888776555444433
No 169
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.32 E-value=2.3e+02 Score=31.55 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=80.2
Q ss_pred hhhccCCCCChhHHhhhccHHHHHHH------------HHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHH-H----
Q 007087 163 HAAQKDDDMPPIEAILAPLEAELKLA------------RQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL-A---- 225 (618)
Q Consensus 163 Ha~QKDddmppieaiiApLeAelk~~------------r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Al-a---- 225 (618)
|..+-.+-.|+|+..|+-+|.+...+ +.-+.+|+++...|+..+..==.-+.+++.++-.-+ +
T Consensus 159 ~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~g 238 (569)
T PRK04778 159 NRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAG 238 (569)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555667889999999999887654 455666777777776666554444445544441111 1
Q ss_pred Hhhhh--------HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHH----HHHHH
Q 007087 226 KASMV--------DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA----VRDYQ 293 (618)
Q Consensus 226 kA~~V--------~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANA----VRdyq 293 (618)
+.-|+ .++..+...|..||..|-.--.-|+=- .--..+.++...|..|-+.+..--.|-+- .....
T Consensus 239 y~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~--~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~ 316 (569)
T PRK04778 239 YRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLD--EAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP 316 (569)
T ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 11122 234455555555555443222211100 00112334444444444444433333333 34445
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhh
Q 007087 294 RKVQEMNEERKTLDRELARAKVT 316 (618)
Q Consensus 294 rq~~eLneEk~tLerELARaKv~ 316 (618)
..+..+.+....|..|+.+.+-+
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 55677778888888888877544
No 170
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=64.93 E-value=2.1 Score=49.37 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=0.0
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQ 270 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsq 270 (618)
.+.|+|..+.+..++.+.+++...++++-.+.-..|++-+..
T Consensus 582 qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~ 623 (859)
T PF01576_consen 582 QLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELRE 623 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666665555555666666666555555555555543
No 171
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.91 E-value=1e+02 Score=26.95 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHH-hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 007087 185 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDD-LQNKNQELMKQIEICQEENKILDKMHRQKVA 263 (618)
Q Consensus 185 lk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~d-lQNkN~EL~kQiEIcqEEnkiLdk~hRQKva 263 (618)
+-.+...+..-.++..-++..+..++..|...+..++.-.. .++. |+-......+-+..|.+|.+.- .++..
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~---~f~~flken~~k~~rA~k~a~~e~k~~----~~k~~ 81 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVI---KFDKFLKENEAKRERAEKRAEEEKKKK----EEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 33444455555566666777777777777777766665433 2222 2233344555666777777654 78888
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 007087 264 EVEKLTQTVRELEEAVLAGGAAANAVRDY 292 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAggAaANAVRdy 292 (618)
||.+|+.++..|..-+---....+-..-|
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888776665544444444444
No 172
>PF14992 TMCO5: TMCO5 family
Probab=63.82 E-value=1e+02 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----hchhhHHHHHHHHHHHHHHHHHHhh--HHHHHhhhh
Q 007087 262 VAEVEKLTQTVRELEEAVL----AGGAAANAVRDYQRKVQEMNEERKT--LDRELARAK 314 (618)
Q Consensus 262 vaEVEKLsqTv~ELEEavL----AggAaANAVRdyqrq~~eLneEk~t--LerELARaK 314 (618)
..++.++-..+.+++.-.. ....+||.++-|+..+..|.+++-+ |++|+..+-
T Consensus 122 ~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 122 LESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQ 180 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555543322 3357899999999999888887765 677765443
No 173
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.76 E-value=2e+02 Score=30.28 Aligned_cols=141 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh---------------------
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIE--------------------- 132 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle--------------------- 132 (618)
+++-++..+.+-..+|..-...|..+--..--.++=|.++..++.++..++..+++-+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~ 118 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATS 118 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q ss_pred --------------------------hhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCC--CChhHHhhhccHHH
Q 007087 133 --------------------------TKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDD--MPPIEAILAPLEAE 184 (618)
Q Consensus 133 --------------------------~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDdd--mppieaiiApLeAe 184 (618)
.=.-=|.-..++|+.-=..|-+-+-.+--+-+.+++-+ +--++...+-+.+=
T Consensus 119 Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l 198 (265)
T COG3883 119 YIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNAL 198 (265)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHH
Q 007087 185 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERT 219 (618)
Q Consensus 185 lk~~r~Ei~kLqddnkALerltKsKEaALleaeR~ 219 (618)
+-.+..+.++++.+..+|. +..++.++...
T Consensus 199 ~~~~aa~~a~~~~e~a~l~-----~qka~a~a~a~ 228 (265)
T COG3883 199 IAALAAKEASALGEKAALE-----EQKALAEAAAA 228 (265)
T ss_pred HHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHH
No 174
>PLN02939 transferase, transferring glycosyl groups
Probab=63.74 E-value=3.5e+02 Score=33.12 Aligned_cols=130 Identities=26% Similarity=0.358 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhHHHHH---HhhhHHHHHHH--------------HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 007087 240 LMKQIEICQEENKILDK---MHRQKVAEVEK--------------LTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEE 302 (618)
Q Consensus 240 L~kQiEIcqEEnkiLdk---~hRQKvaEVEK--------------LsqTv~ELEEavLAggAaANAVRdyqrq~~eLneE 302 (618)
|..++....|||..|.. +-+++..+|.. |..++++||--+.++-+ +...-.-.|+.-+-+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 301 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQE--DVSKLSPLQYDCWWEK 301 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhccchhHHHHHHH
Confidence 46677778888876632 12333333322 44555666555433211 1111111112224445
Q ss_pred HhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHH----------hhhhHHHHHHHHHHHHHhHHhhhhHHHH
Q 007087 303 RKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEE----------RRFLQGEMQQLRDRLAITERTAKSEAQL 372 (618)
Q Consensus 303 k~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEE----------rRflQGEmqrLrdKLAiaERtAkaEaQL 372 (618)
+.+|.-=|.+++--+-.-|.| -..-.|=-|||=-++--|+| .++||--|..|+++|..+.-.-.+..|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (977)
T PLN02939 302 VENLQDLLDRATNQVEKAALV-LDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQL 380 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555554444332222 22223333344333333333 3678888888888887665555555544
No 175
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.60 E-value=2.4e+02 Score=31.18 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=29.8
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 78 LENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 78 LeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
|.+.++..-.++..++.+++.++......++-++.++..+..+++ +....+..+....++++|.+--+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~-~~l~~~E~e~L~~e~~~L~n~e~ 226 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE-ADLQPGEDEALEAEQQRLSNLEK 226 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-CCcCCCcHHHHHHHHHHHhCHHH
Confidence 334444444444455555555544444444444444444443332 22223333334445555554444
No 176
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=62.85 E-value=54 Score=28.18 Aligned_cols=72 Identities=28% Similarity=0.338 Sum_probs=47.9
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREK---AVEELTEELSKVEEKLKLAENLIETKNLEI 138 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdK---Aveel~~el~kldEKLk~tE~lle~knLEi 138 (618)
+....+.++-.|-.+.|....++...+++-+.+--.....-+ .+++|..++..+++++...|..+....-++
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888887777766544444333 366777777777777777776665544433
No 177
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=62.78 E-value=68 Score=28.35 Aligned_cols=88 Identities=31% Similarity=0.440 Sum_probs=65.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH-------------------------HH--hc-
Q 007087 231 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA-------------------------VL--AG- 282 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa-------------------------vL--Ag- 282 (618)
+.|+-..+.|..+|+.++.+-.-| ++...|.+.+-.++..|... |+ -|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l----~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~ 77 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARL----NEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGT 77 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCC
Confidence 456667777777888887777766 67788888888888888751 22 11
Q ss_pred h-----hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhh
Q 007087 283 G-----AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAT 322 (618)
Q Consensus 283 g-----AaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~ 322 (618)
| ....|+..+.+++..|.+....|+.++...+--.|.|-.
T Consensus 78 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 78 GYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 344789999999999999999999998887776665543
No 178
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=62.51 E-value=2.6e+02 Score=31.31 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=73.2
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhh----hh-HHHHh
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKI----ND-EKRAS 148 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKkl----nd-EKK~a 148 (618)
++-+--.+|++|.++++.-+.|--+.+.--.-|.-+++-+.+-++..+++++..|++++.----...+ .+ ||
T Consensus 140 ~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~--- 216 (464)
T KOG4637|consen 140 KLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEK--- 216 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHH---
Confidence 44455567889999999999888888877778888999999999999999999999987632222222 11 22
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHH
Q 007087 149 MAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKAL 202 (618)
Q Consensus 149 lAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkAL 202 (618)
.++-||+-++- |++-|.-..++...|.|+.+||
T Consensus 217 ~~~~~a~N~~~---------------------~ks~i~ei~~sl~~l~d~lk~~ 249 (464)
T KOG4637|consen 217 EIGRIANNYDK---------------------LKSRIREIHDSLTRLEDDLKAL 249 (464)
T ss_pred HHHHHHhhhHH---------------------HHHHHHHHHHHHHhHHHHHHHH
Confidence 23344444432 3455666666777777777776
No 179
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.38 E-value=42 Score=33.78 Aligned_cols=78 Identities=29% Similarity=0.448 Sum_probs=58.7
Q ss_pred HhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh---HHHHHHhhhHHHHHHHHHH
Q 007087 194 KLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN---KILDKMHRQKVAEVEKLTQ 270 (618)
Q Consensus 194 kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEn---kiLdk~hRQKvaEVEKLsq 270 (618)
++...+|-+|||+|-|+ +=++ |+.+++ .+++.|++|+++.+-++ ||..+-|.-+.-|-.|..-
T Consensus 28 ~iK~qiRd~eRlLkk~~---LP~~--Vr~e~e---------r~L~~Lk~ql~~~~l~~k~rkif~ryrkVRFFErkKaeR 93 (199)
T KOG4484|consen 28 SIKNQIRDLERLLKKKD---LPPE--VREELE---------RKLQDLKKQLDNHELLAKERKIFKRYRKVRFFERKKAER 93 (199)
T ss_pred HHHHHHHHHHHHHhhcc---CCHH--HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999998743 3333 555544 45678888888866554 5888988888899999999
Q ss_pred HHHHHHHHHHhchhh
Q 007087 271 TVRELEEAVLAGGAA 285 (618)
Q Consensus 271 Tv~ELEEavLAggAa 285 (618)
.|+.||-.+--+||-
T Consensus 94 ~irrLeK~~keS~ad 108 (199)
T KOG4484|consen 94 SIRRLEKLIKESGAD 108 (199)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999977764
No 180
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.14 E-value=75 Score=26.95 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=33.6
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007087 77 RLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLA 127 (618)
Q Consensus 77 RLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~t 127 (618)
.|++.|++||-.+..-..|-..|-.++-.-.-.|..|+.....++..+..+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998888888777776655555544444444444333333
No 181
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.04 E-value=1.6e+02 Score=28.75 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=33.9
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKL 124 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKL 124 (618)
-.||++. |...+++-...|..+...+.....+...=++=+.++.....+...+-
T Consensus 22 ~EDP~~~----l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 22 AEDPEKM----IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred ccCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688754 45556666667777777777766666655555666665555555543
No 182
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.66 E-value=87 Score=33.93 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 007087 287 NAVRDYQRKVQEMNEERKTLDRELARA 313 (618)
Q Consensus 287 NAVRdyqrq~~eLneEk~tLerELARa 313 (618)
.+.++..+++.+++++...|+++|+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888999999999999998655
No 183
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.42 E-value=60 Score=30.19 Aligned_cols=62 Identities=31% Similarity=0.429 Sum_probs=34.8
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKALRLSERLRE--KAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kd--KAveel~~el~kldEKLk~tE~lle~ 133 (618)
..|+..|..++.+...+|.+-..+++.|+..-..=. --.+||...+..+...+..++.-|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666653322222 22355555555555555555555554
No 184
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=61.27 E-value=1.3e+02 Score=28.28 Aligned_cols=84 Identities=18% Similarity=0.297 Sum_probs=52.7
Q ss_pred hchHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-----hhHHhhhhhHHHHHHHHHHHH--HhHHHHHHhhhHHHHHHHHH
Q 007087 197 DDNKALDRLTKSKEAALLEAERTVQVALAKAS-----MVDDLQNKNQELMKQIEICQE--ENKILDKMHRQKVAEVEKLT 269 (618)
Q Consensus 197 ddnkALerltKsKEaALleaeR~v~~AlakA~-----~V~dlQNkN~EL~kQiEIcqE--EnkiLdk~hRQKvaEVEKLs 269 (618)
+-.+.++.|.+-=|..=-.+...+....+.+. +|+++.++...-.-.+|..=+ -+.+|.++.=-.-.||+.|+
T Consensus 36 EG~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~ 115 (132)
T PF05597_consen 36 EGSKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALS 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44567788877766665555555655555554 566666666555555554333 35577666666667777777
Q ss_pred HHHHHHHHHHH
Q 007087 270 QTVRELEEAVL 280 (618)
Q Consensus 270 qTv~ELEEavL 280 (618)
.-|.+|...|.
T Consensus 116 ~rId~L~~~v~ 126 (132)
T PF05597_consen 116 ARIDQLTAQVE 126 (132)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 185
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.57 E-value=2.9e+02 Score=31.21 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=42.7
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Q 007087 228 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQK---VAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERK 304 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQK---vaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~ 304 (618)
-.|-+++.+..+|..||. +|-.+++..+..+- ...++.|.+.+.+++..+........-++..+|++.-...-..
T Consensus 316 P~v~~l~~qi~~l~~~i~--~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIR--SELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777763 33344443322110 1122345555555555554444443345555555555444444
Q ss_pred hHHHHHhhhhhhh
Q 007087 305 TLDRELARAKVTA 317 (618)
Q Consensus 305 tLerELARaKv~A 317 (618)
.|-.-+..+++..
T Consensus 394 ~ll~r~~e~~~~~ 406 (754)
T TIGR01005 394 SYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHhh
Confidence 4444444444443
No 186
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.42 E-value=2.4e+02 Score=30.24 Aligned_cols=157 Identities=25% Similarity=0.298 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHHH----HHHhhhhHHhhhhhHHHHHHHHHHHHH----h-HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007087 207 KSKEAALLEAERTVQVA----LAKASMVDDLQNKNQELMKQIEICQEE----N-KILDKMHRQKVAEVEKLTQTVRELEE 277 (618)
Q Consensus 207 KsKEaALleaeR~v~~A----lakA~~V~dlQNkN~EL~kQiEIcqEE----n-kiLdk~hRQKvaEVEKLsqTv~ELEE 277 (618)
.||--||.-.-+.+... ..+-.|++-||.+.+.|++++..+.-+ + ..+.... +=..|++.+.+..|
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~-----~~~~La~lL~~sre 79 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEK-----ENKNLAQLLSESRE 79 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCccc-----chhhHHHHHHHHHH
Confidence 35555554444433332 345667777777777777776544311 0 0110001 22445555555555
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHH
Q 007087 278 AVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRD 357 (618)
Q Consensus 278 avLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrd 357 (618)
....-. .=|..++.++.|+..+.+.|-.-+++.++..+.+.+-.. | .||-=|--.+-.++.
T Consensus 80 ~Nk~L~---~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~-----------~-----~ere~lV~qLEk~~~ 140 (319)
T PF09789_consen 80 QNKKLK---EEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF-----------P-----HEREDLVEQLEKLRE 140 (319)
T ss_pred HHHHHH---HHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc-----------c-----hHHHHHHHHHHHHHH
Confidence 544322 125567788888888888888888888887764332211 1 555556666677777
Q ss_pred HHHHhHHhhhhHHHHH-------HHHHHHHHHHHHhh
Q 007087 358 RLAITERTAKSEAQLK-------EKYHLRLKVLEESL 387 (618)
Q Consensus 358 KLAiaERtAkaEaQLK-------eK~klRLk~lEe~L 387 (618)
++...||.-++----| |-|+-...-|=.-|
T Consensus 141 q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 141 QIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766543333 44555555444444
No 187
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.05 E-value=2e+02 Score=29.18 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=11.0
Q ss_pred ChhHHhhhccHHHHHHHHHHHHH
Q 007087 172 PPIEAILAPLEAELKLARQEIAK 194 (618)
Q Consensus 172 ppieaiiApLeAelk~~r~Ei~k 194 (618)
+++.+.++-++|++..++.++..
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMT 104 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444443
No 188
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.34 E-value=3.8e+02 Score=32.15 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhc----h---hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 264 EVEKLTQTVRELEEAVLAG----G---AAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAg----g---AaANAVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
.++.|.+.+.++++.+... | ...+....-..++.++.++...+..+..+....+.
T Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 884 (1047)
T PRK10246 823 TVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWGYLNS 884 (1047)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555432 2 22233444555666777777777766665555443
No 189
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=59.08 E-value=2.6e+02 Score=30.11 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHH
Q 007087 292 YQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAI 361 (618)
Q Consensus 292 yqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAi 361 (618)
....|..|..|+..|-.+|+.+. .+-+++..+++.+-+-+..|..+|+-+|..
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq-----------------~e~~~k~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQ-----------------QEHSEKMAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668888888888888886332 223578889999999999999999999963
No 190
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=58.72 E-value=92 Score=29.86 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=56.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----H-h----------------------
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV-----L-A---------------------- 281 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEav-----L-A---------------------- 281 (618)
+++|-.+.+-+..||+..|-+-.-| +.-+.||...-.||..++.+= | -
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l----~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG 83 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAAL----NAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG 83 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence 4556666666677777766666655 555666666666665554332 0 0
Q ss_pred ch-----hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 282 GG-----AAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 282 gg-----AaANAVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
+| .+-.|+.+|++++.+|......|..+|+..-..+.
T Consensus 84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~ 125 (145)
T COG1730 84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE 125 (145)
T ss_pred CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 12378999999999999999999999976555444
No 191
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=58.58 E-value=3.1e+02 Score=30.90 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=52.7
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH
Q 007087 173 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK 252 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk 252 (618)
-|+.++.||...|...+..+.....+ .+-++++ |..++..|+.+-.-...|..
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~~-----------------------~~~~~~~----L~~qi~~L~~~n~~i~~ea~ 189 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFGK-----------------------EAQERHT----LAHEIRNLQQLNAQMAQEAI 189 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH-----------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999877654322 1112222 23333344444444455555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH--HHHHHHhchhhHHHHHHHHHHHH
Q 007087 253 ILDKMHRQKVAEVEKLTQTVRE--LEEAVLAGGAAANAVRDYQRKVQ 297 (618)
Q Consensus 253 iLdk~hRQKvaEVEKLsqTv~E--LEEavLAggAaANAVRdyqrq~~ 297 (618)
.|.+.-+.- -|....-+| ||-.+..+|-.-. ++|+.|++
T Consensus 190 nLt~ALkgd----~K~rG~WGE~qLerILE~sGL~~~--~~y~~Q~~ 230 (475)
T PRK10361 190 NLTRALKGD----NKTQGNWGEVVLTRVLEASGLREG--YEYETQVS 230 (475)
T ss_pred HHHHHHcCC----CCcCcchHHHHHHHHHHHhCCCcC--Ccceeeee
Confidence 554433320 245566777 7777777776544 57876664
No 192
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.94 E-value=2.7e+02 Score=29.90 Aligned_cols=174 Identities=25% Similarity=0.335 Sum_probs=115.9
Q ss_pred HHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 007087 190 QEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLT 269 (618)
Q Consensus 190 ~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLs 269 (618)
..+.|..+|+.|+-+|+.-||+-|.-|.+|=++-|. +|..|+ +.|.-|+..-...-.+|.-|.
T Consensus 55 ~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~----------~N~~L~-------~~~~~le~~L~~~~e~v~qLr 117 (306)
T PF04849_consen 55 SQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLE----------QNQDLS-------ERNEALEEQLGAALEQVEQLR 117 (306)
T ss_pred hhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHH----------hcccHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999988887776544 455554 444455555566667777777
Q ss_pred HHHHHHHHHHH--h----------chh-----------hHHH--HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhh-----
Q 007087 270 QTVRELEEAVL--A----------GGA-----------AANA--VRDYQRKVQEMNEERKTLDRELARAKVTANR----- 319 (618)
Q Consensus 270 qTv~ELEEavL--A----------ggA-----------aANA--VRdyqrq~~eLneEk~tLerELARaKv~ANR----- 319 (618)
+.+.-=.+.+. + ++. .-+. +-..|+|+..|.+|...|..|-++-+--.--
T Consensus 118 HeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE 197 (306)
T PF04849_consen 118 HELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE 197 (306)
T ss_pred HHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH
Confidence 77765444422 1 111 0011 3456888888888888888776554411100
Q ss_pred ---hhhhhhcccccCCCCccchhhHH----HHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHH
Q 007087 320 ---VATVVANEWKDANDKVMPVKQWL----EERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLK 381 (618)
Q Consensus 320 ---VA~vvAnEWKD~ndkVmPVKqWL----EErRflQGEmqrLrdKLAiaERtAkaEaQLKeK~klRLk 381 (618)
|.- .+.+..++|..+.-...=| |+=...|-||-+|.-.|+-.++-++.-+.=+|.++..|.
T Consensus 198 qqLv~d-cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 198 QQLVLD-CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 000 2345567777777665544 455678999999999999998888876666666666654
No 193
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=57.66 E-value=94 Score=30.11 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=53.0
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhhhhhhhhhhhhhHHHHhH
Q 007087 78 LENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAE-NLIETKNLEIKKINDEKRASM 149 (618)
Q Consensus 78 LeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE-~lle~knLEiKklndEKK~al 149 (618)
.+....+-+.+|..|+.|...++. ..++++..+...+...++..|+.+= ..++.+++.++.+..++++.|
T Consensus 60 Ae~l~a~ye~~L~~Ar~eA~~I~~--e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (155)
T PRK06569 60 VEKLNKYYNEEIDKTNTEIDRLKK--EKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAI 130 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344455577788888888888774 5789999999999999999998653 346677777777777777654
No 194
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=57.38 E-value=67 Score=34.75 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=43.2
Q ss_pred HHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHH-------HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 189 RQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL-------AKASMVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 189 r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Al-------akA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
+..|+--|+.||-||..-+.|=+.+--.-.||+.-. +-|-.|-|.|+|.+| ..||.++||+
T Consensus 13 ~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~e-------lneEkrtLeR 80 (351)
T PF07058_consen 13 MKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQE-------LNEEKRTLER 80 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 457888999999999999999776655555554433 345556666665555 5689999874
No 195
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=57.29 E-value=4.4e+02 Score=32.26 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=61.1
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH--------
Q 007087 175 EAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI-------- 246 (618)
Q Consensus 175 eaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI-------- 246 (618)
+..+-|||.++--++.+..+.-++.. .++.-.+-|+..+-..+.|.. .|++..|++.-...|++.
T Consensus 364 ~~ql~~le~~~~e~q~~~qe~~~e~e----qLr~elaql~a~r~q~eka~~---~~ee~e~~~l~~e~ry~klkek~t~l 436 (980)
T KOG0980|consen 364 ENQLLALEGELQEQQREAQENREEQE----QLRNELAQLLASRTQLEKAQV---LVEEAENKALAAENRYEKLKEKYTEL 436 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666655554444444333 233323333222222222222 255555555555555443
Q ss_pred HHHHhHHHHHH-hhhHHHHHHHHHHH-----HHHHHHHHHhc---hhhHHH-HHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 007087 247 CQEENKILDKM-HRQKVAEVEKLTQT-----VRELEEAVLAG---GAAANA-VRDYQRKVQEMNEERKTLDRELARAKVT 316 (618)
Q Consensus 247 cqEEnkiLdk~-hRQKvaEVEKLsqT-----v~ELEEavLAg---gAaANA-VRdyqrq~~eLneEk~tLerELARaKv~ 316 (618)
.|+-+.+|.|. .+||-+|++..++- ..+|.+-|+.- +-.+|+ .++-.-....|..|+..|..|+++..+.
T Consensus 437 ~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 437 RQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566554 24455554443332 22233333322 222233 2222233456666777777777666655
No 196
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=56.93 E-value=2.8e+02 Score=32.31 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 109 AVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 109 Aveel~~el~kldEKLk~tE~lle~ 133 (618)
.|..|.+.|..+|.-+.-.|.+||.
T Consensus 51 ~l~~L~~~l~~ID~ai~~~l~lIe~ 75 (683)
T PF08580_consen 51 VLYGLREGLEEIDSAISRFLDLIEV 75 (683)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555544
No 197
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.12 E-value=1.7e+02 Score=27.20 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhhh
Q 007087 112 ELTEELSKVEEKLKLAENLIETKNLEIKKIN 142 (618)
Q Consensus 112 el~~el~kldEKLk~tE~lle~knLEiKkln 142 (618)
.+...+....+++...+...+.+..++..+.
T Consensus 120 ~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 120 ELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 198
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=56.10 E-value=4.1e+02 Score=31.48 Aligned_cols=106 Identities=32% Similarity=0.442 Sum_probs=73.4
Q ss_pred HHHHHHhhhccCCCCChhHHhhhcc----HHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 007087 157 ATLRRVHAAQKDDDMPPIEAILAPL----EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDD 232 (618)
Q Consensus 157 AtLRRvHa~QKDddmppieaiiApL----eAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~d 232 (618)
||||-|=.+-|- --|..||.| |.|=.|+-.-+.||.-..|||- .|||-+..=|.| .|.=||+
T Consensus 607 aTLRTVLKANKq----TAEvALanLKsKYE~EK~~v~etm~kLRnELK~LK-----EDAATFsSlRam-----Fa~RCdE 672 (717)
T PF09730_consen 607 ATLRTVLKANKQ----TAEVALANLKSKYENEKAMVSETMMKLRNELKALK-----EDAATFSSLRAM-----FAARCDE 672 (717)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-----HHHHHHH
Confidence 466666655554 233444444 5555566566666666666663 456666666655 3457999
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007087 233 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 233 lQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELE 276 (618)
..-++-|+.+|+.-+.+|.|.|.-+-|.-|--==-|||-+.+||
T Consensus 673 YvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLTQRLEdlE 716 (717)
T PF09730_consen 673 YVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLE 716 (717)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998887765554445788777765
No 199
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=54.92 E-value=1e+02 Score=27.09 Aligned_cols=88 Identities=26% Similarity=0.380 Sum_probs=59.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHh-----------------------ch
Q 007087 231 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA----VLA-----------------------GG 283 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa----vLA-----------------------gg 283 (618)
+.++.+.+.|..||+.++..-.-| .....|++.+-.++..|... ++- +|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l----~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g 77 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAAL----RALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG 77 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Confidence 455666666666777666665555 45566666666666666543 221 11
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhh
Q 007087 284 -----AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAT 322 (618)
Q Consensus 284 -----AaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~ 322 (618)
...-|...|.+++..|++....|+..|+..+--++.|..
T Consensus 78 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 78 YYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223578899999999999999999999877766665543
No 200
>PF13514 AAA_27: AAA domain
Probab=54.82 E-value=4.5e+02 Score=31.56 Aligned_cols=184 Identities=21% Similarity=0.313 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhh-------------HHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 183 AELKLARQEIAKLQDDNKALDRLTKS-------------KEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 183 Aelk~~r~Ei~kLqddnkALerltKs-------------KEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
.++...+..|+.++.+..+++.-+.. -+..+......+..+-.....++.++.+..++..+++.+++
T Consensus 743 ~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~ 822 (1111)
T PF13514_consen 743 AEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEE 822 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666655542221 12344555555555555555556666666666666655544
Q ss_pred HhH--------HHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhc--hhhHHH----------------HHHHH
Q 007087 250 ENK--------ILDKMH----------RQKVAEVEKLTQTVRELEEAVLAG--GAAANA----------------VRDYQ 293 (618)
Q Consensus 250 Enk--------iLdk~h----------RQKvaEVEKLsqTv~ELEEavLAg--gAaANA----------------VRdyq 293 (618)
+-. ++...+ -....+...|.+.+..++..|... |..... +...+
T Consensus 823 ~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~ 902 (1111)
T PF13514_consen 823 ELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELE 902 (1111)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHH
Confidence 322 221111 123345667777777888777422 211111 23334
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHH
Q 007087 294 RKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLK 373 (618)
Q Consensus 294 rq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLK 373 (618)
.++..++.+...|..++++++.-.+.+. + ++ .+-.-.+++.-+..+|..+-.+.....-....=.+..
T Consensus 903 ~~l~~l~~~~~~l~~~~~~~~~~l~~l~----~-----~~---~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~ 970 (1111)
T PF13514_consen 903 EELEELEEELEELQEERAELEQELEALE----G-----DD---DAAELEQEREEAEAELEELAEEWAALRLAAELLEEAI 970 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-----Cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444321 1 11 2346677888888888888887766665555555555
Q ss_pred HHHHH
Q 007087 374 EKYHL 378 (618)
Q Consensus 374 eK~kl 378 (618)
++|..
T Consensus 971 ~~~r~ 975 (1111)
T PF13514_consen 971 ERYRE 975 (1111)
T ss_pred HHHHH
Confidence 56654
No 201
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=54.68 E-value=2.7e+02 Score=29.00 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhH
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRL----SERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASM 149 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~----se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~al 149 (618)
.|+.|++++..-..++.++++......- .....+-.+..+..++..+..++...-......+-.|..+..+.. .+
T Consensus 216 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~-~l 294 (444)
T TIGR03017 216 RLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEIN-SL 294 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 007087 150 AAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASM 229 (618)
Q Consensus 150 AAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~ 229 (618)
-+|...+ +..++..+++++..++..+..|......+..-+..=.....+..+--+.....-.+
T Consensus 295 ~~~l~~e-----------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~ 357 (444)
T TIGR03017 295 KSQLNAE-----------------IKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRA 357 (444)
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhhhhhHHHH
Q 007087 230 VDDLQNKNQELM 241 (618)
Q Consensus 230 V~dlQNkN~EL~ 241 (618)
.+.+-++..|..
T Consensus 358 y~~ll~r~~e~~ 369 (444)
T TIGR03017 358 YDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHH
No 202
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.15 E-value=2.9e+02 Score=29.15 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHH
Q 007087 122 EKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLAR 189 (618)
Q Consensus 122 EKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r 189 (618)
=|.+.++++.+...-.+.-+..++. .|..+.+-. ++-.|.+..-.+-|+.++...+
T Consensus 137 WR~kllegLk~~L~~~~~~l~~D~~-~L~~~~~~l-----------~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 137 WRMKLLEGLKEGLDENLEGLKEDYK-LLMKELELL-----------NSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777766 344333222 1224555555555555554444
No 203
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=53.78 E-value=1.6e+02 Score=28.43 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=50.1
Q ss_pred CChhHHhhhccHHHH---HHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHH
Q 007087 171 MPPIEAILAPLEAEL---KLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEIC 247 (618)
Q Consensus 171 mppieaiiApLeAel---k~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIc 247 (618)
||-+=.++--||+=. .....++..|++|+.-|....+.+-..-..++..+. .+=|.+....++|..||+.|
T Consensus 28 mP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~------~~Ed~~~~e~k~L~~~v~~L 101 (158)
T PF09744_consen 28 MPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELL------ELEDQWRQERKDLQSQVEQL 101 (158)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 666666666665533 334456778888888777655432211122221111 11367888999999999999
Q ss_pred HHHhHHHH
Q 007087 248 QEENKILD 255 (618)
Q Consensus 248 qEEnkiLd 255 (618)
+++|+-|.
T Consensus 102 e~e~r~L~ 109 (158)
T PF09744_consen 102 EEENRQLE 109 (158)
T ss_pred HHHHHHHH
Confidence 99999886
No 204
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=53.16 E-value=2.6e+02 Score=28.38 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=9.4
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q 007087 81 EVRDKDRELGEAQAEIKALR 100 (618)
Q Consensus 81 ~lr~KdrEL~~A~aEIkaLr 100 (618)
.+....-+|..+++++..++
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555554443
No 205
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.90 E-value=88 Score=26.50 Aligned_cols=66 Identities=27% Similarity=0.350 Sum_probs=40.4
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
+++-++.|+..|..+-..+++.+..++.|-+ -.+ .+.+.+..|.. =+.+|...|..|.++++.|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~---ERd----~~~~~l~~a~~---e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR---ERD----SAERQLGDAYE---ENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777777777777777766666543 222 22333444332 346777777788877777653
No 206
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.85 E-value=91 Score=32.48 Aligned_cols=59 Identities=32% Similarity=0.357 Sum_probs=24.2
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIE 132 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle 132 (618)
||..||++..+-++|+...+.|.+.|...|..-=+-...+.-++..+.+.+..+++.+.
T Consensus 65 eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443333333444444444444444444433
No 207
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=52.72 E-value=2e+02 Score=26.89 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=46.0
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 007087 173 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI 246 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI 246 (618)
.+..-+|.|+-.|--++..+.-|.-++..|.....+ +.++ ....-.-|.|||-++.|+.++++-
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~-----L~~q-----~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQS-----LQAQ-----NASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH-----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999998887777776655443 2222 333445578899999998888875
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=52.51 E-value=3e+02 Score=32.47 Aligned_cols=24 Identities=42% Similarity=0.757 Sum_probs=16.8
Q ss_pred hhhhhhhhhhhhhcccccCCCCccchhhHH
Q 007087 313 AKVTANRVATVVANEWKDANDKVMPVKQWL 342 (618)
Q Consensus 313 aKv~ANRVA~vvAnEWKD~ndkVmPVKqWL 342 (618)
..|+..-||.||+ .|-+ |||..-+
T Consensus 529 ~~v~~~~i~~vv~-~~tg-----ip~~~~~ 552 (857)
T PRK10865 529 NKVTDAEIAEVLA-RWTG-----IPVSRML 552 (857)
T ss_pred CccCHHHHHHHHH-HHHC-----CCchhhh
Confidence 3477888888885 6755 6987543
No 209
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.48 E-value=1.8e+02 Score=26.39 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 007087 266 EKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELA 311 (618)
Q Consensus 266 EKLsqTv~ELEEavLAg-gAaANAVRdyqrq~~eLneEk~tLerELA 311 (618)
+....++...+.....- ..--+-+.+.+.+|.+|+...++|..+|-
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444333333 22335588889999999999999988874
No 210
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=51.86 E-value=3.1e+02 Score=28.81 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh-hhhhhhhhhhhh-----hhcccccCCCCccch
Q 007087 286 ANAVRDYQRKVQEMNEERKTLDRELA-RAKVTANRVATV-----VANEWKDANDKVMPV 338 (618)
Q Consensus 286 ANAVRdyqrq~~eLneEk~tLerELA-RaKv~ANRVA~v-----vAnEWKD~ndkVmPV 338 (618)
.+-+...+.++.+...+...++.+|. +..+.|=-=.+| -.|+|=..+..+|-+
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i 284 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELNYTPGQLVAAGAPLASL 284 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEeeCCCCCEecCCCcEEEE
Confidence 34456666777777777777777776 455544322222 345665555555544
No 211
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=51.84 E-value=2.4e+02 Score=27.59 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=26.2
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL 224 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Al 224 (618)
|+-+|--++.+|..+|..++.+.-..+-+++-+..-+.....-+...+.||
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al 79 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELAL 79 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555444444444444444443
No 212
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.31 E-value=1.3e+02 Score=32.64 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHH
Q 007087 181 LEAELKLARQEIAKLQDDNKALDRLT 206 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnkALerlt 206 (618)
+.+-+..+..++..+....+.|++-+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRI 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777766665555444433
No 213
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=50.35 E-value=16 Score=25.91 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=17.4
Q ss_pred hHHhhhhhHHHHHHHHHHHH
Q 007087 230 VDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqE 249 (618)
|+.+.+++.+|.+|+.+|..
T Consensus 3 ~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999963
No 214
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=49.88 E-value=76 Score=25.83 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHH
Q 007087 112 ELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQE 191 (618)
Q Consensus 112 el~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~E 191 (618)
+-..-+..++..|.-.+.+|.+|.+|+.-+.. +.-.++...|+.||.+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~--------------------------------s~r~~~~~kl~~yr~~ 69 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPP--------------------------------SERNQYKSKLRSYRSE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H--------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------------------------------HHHHHHHHHHHHHHHH
Confidence 44556677777888888899999888876532 2224566778888888
Q ss_pred HHHhhhch
Q 007087 192 IAKLQDDN 199 (618)
Q Consensus 192 i~kLqddn 199 (618)
+.+|+.+.
T Consensus 70 l~~lk~~l 77 (79)
T PF05008_consen 70 LKKLKKEL 77 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877654
No 215
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=49.24 E-value=1.6e+02 Score=24.91 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=45.1
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHhHHHhhh
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVE---ELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAve---el~~el~kldEKLk~tE~lle~ 133 (618)
+.-++..|+|.|.--.|.++.-+.+++.|+. .+|-++- ....+..+|.+.+.++...|++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~---ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR---ERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999987 4555544 4456667777777776666543
No 216
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.13 E-value=1.4e+02 Score=33.90 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.8
Q ss_pred hhhhhhHHHhhhhHHHHHHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQAE 95 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aE 95 (618)
+|.|.|..|.|..++|..|+.|
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888999999999988
No 217
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.90 E-value=1.7e+02 Score=24.90 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=47.3
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 233 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 233 lQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELAR 312 (618)
|++.+-|=--||.-..+|-.-|.+-.-+--.-|-||.+.+.++|.. +..|..++..+..+...|..-|.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~----------~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ----------IKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445455677777777777666666666677888888877754 455667777777777777766654
Q ss_pred h
Q 007087 313 A 313 (618)
Q Consensus 313 a 313 (618)
+
T Consensus 73 ~ 73 (74)
T PF12329_consen 73 A 73 (74)
T ss_pred c
Confidence 3
No 218
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=48.50 E-value=3.1e+02 Score=27.93 Aligned_cols=99 Identities=23% Similarity=0.336 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH
Q 007087 182 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQK 261 (618)
Q Consensus 182 eAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQK 261 (618)
.+||.....+|.+|++..++|-.-..+=|+.|-+ |-.++-.+++|...++|.+..--+.+--+.+
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~--------L~s~Lt~eemQe~i~~L~kev~~~~erl~~~------- 142 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKE--------LSSALTTEEMQEEIQELKKEVAGYRERLKNI------- 142 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4577777889999999998887777766666544 3456678899999988877544433322111
Q ss_pred HHHHHHHHHHHHHHHHHHH-hc-hhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007087 262 VAEVEKLTQTVRELEEAVL-AG-GAAANAVRDYQRKVQEMNEERKTLDREL 310 (618)
Q Consensus 262 vaEVEKLsqTv~ELEEavL-Ag-gAaANAVRdyqrq~~eLneEk~tLerEL 310 (618)
.+++- -+ ..--|+-|.|++.|.+-...++. -||+
T Consensus 143 --------------k~g~~~vtpedk~~v~~~y~~~~~~wrk~krm-f~ei 178 (201)
T KOG4603|consen 143 --------------KAGTNHVTPEDKEQVYREYQKYCKEWRKRKRM-FREI 178 (201)
T ss_pred --------------HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 11111 01 23458889999999998887773 3443
No 219
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.38 E-value=3.8e+02 Score=28.81 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=20.1
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 228 SMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
.=+.|||.+..|.+.=+...|+|-|-|
T Consensus 276 aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 276 AELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777777777777777788887766
No 220
>PRK10807 paraquat-inducible protein B; Provisional
Probab=48.37 E-value=1.1e+02 Score=34.27 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=21.3
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhh
Q 007087 172 PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKS 208 (618)
Q Consensus 172 ppieaiiApLeAelk~~r~Ei~kLqddnkALerltKs 208 (618)
.||+.|++-|++-|+..+.-...+......++.++-+
T Consensus 432 lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~ 468 (547)
T PRK10807 432 LPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSS 468 (547)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 3477777777666666665555555444444444433
No 221
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=48.22 E-value=2.9e+02 Score=27.48 Aligned_cols=97 Identities=26% Similarity=0.395 Sum_probs=55.2
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHH
Q 007087 137 EIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEA 216 (618)
Q Consensus 137 EiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALlea 216 (618)
....+..+ |..|+..|+.. ++.|+..|---..+++.++....+|.-+-+-|+.-
T Consensus 30 ~~~~i~~~-r~~l~s~y~~q---------------------~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~q---- 83 (206)
T PF14988_consen 30 QLEEIQRE-RQELVSRYAKQ---------------------TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQ---- 83 (206)
T ss_pred HHHHHHHH-HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----
Confidence 34445444 44788887764 56777777777778888887777777666655433
Q ss_pred HHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhhHHHHHHHHHHHHHHHH
Q 007087 217 ERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK-ILDKMHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 217 eR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQKvaEVEKLsqTv~ELE 276 (618)
...+++|.+++...+.+.. -+-.|+.|-.-|=..|.+.+.++.
T Consensus 84 -----------------e~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 84 -----------------EREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2233344444444444433 344455555555555555444433
No 222
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=48.16 E-value=2.4e+02 Score=30.27 Aligned_cols=66 Identities=29% Similarity=0.345 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhHHH----HHHHHHHHHHHHHH
Q 007087 237 NQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANA----VRDYQRKVQEMNEE 302 (618)
Q Consensus 237 N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAg-gAaANA----VRdyqrq~~eLneE 302 (618)
+..|..+++..+.+|.-|..-+.+-..++|++...-.++|+.+++- -..-|. +|.+|+++..+.+.
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 3333333334444554454445566677899999999999988765 444565 56666655555543
No 223
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=48.09 E-value=1.7e+02 Score=32.66 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=38.0
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHH
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 220 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v 220 (618)
.---|+..++...+||+.++.++.+|++-++.|+..|.-|+-.+
T Consensus 286 ar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRl 329 (421)
T KOG2685|consen 286 ARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRL 329 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Confidence 34468888889999999999999999999999999998887544
No 224
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=48.01 E-value=6 Score=45.81 Aligned_cols=290 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred hHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH----hh---
Q 007087 60 EFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENL----IE--- 132 (618)
Q Consensus 60 ~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~l----le--- 132 (618)
++.++..-.|-.......|+-.+++..-.+.+..-++.+=|..-.-=+|+-..|..||.-|.++|--.-+- .+
T Consensus 19 El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~k 98 (859)
T PF01576_consen 19 ELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNK 98 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHH
Confidence 34444344666677777888888888888888888887777766666777778888887777666443332 22
Q ss_pred hhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCC----------hhHHhhhccHHHHHHHHHHHHHhhhchHHH
Q 007087 133 TKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMP----------PIEAILAPLEAELKLARQEIAKLQDDNKAL 202 (618)
Q Consensus 133 ~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmp----------pieaiiApLeAelk~~r~Ei~kLqddnkAL 202 (618)
..--|+.+|.-+=-.+-...-++-++||+=|..+-.+=.- -++-.=.-|+.++.-...++..++-.+-..
T Consensus 99 krE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~ 178 (859)
T PF01576_consen 99 KREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEA 178 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1123444442221111222235566789888766444222 222233445566666666666666666677
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH----HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH----
Q 007087 203 DRLTKSKEAALLEAERTVQVAL----AKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE---- 274 (618)
Q Consensus 203 erltKsKEaALleaeR~v~~Al----akA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E---- 274 (618)
|+..|.-|..|.++...+...- .......-|++.|.+|.+|++....-...|.+...+ |.+.+.+
T Consensus 179 Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~-------L~~qLeelk~~ 251 (859)
T PF01576_consen 179 EKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSS-------LESQLEELKRQ 251 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHH
Confidence 7888888888877765544332 233455678888999999998877666566443333 3333433
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHH-------HHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCc-cc-hhhHHHHh
Q 007087 275 LEEAVLAGGAAANAVRDYQRKVQEMN-------EERKTLDRELARAKVTANRVATVVANEWKDANDKV-MP-VKQWLEER 345 (618)
Q Consensus 275 LEEavLAggAaANAVRdyqrq~~eLn-------eEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkV-mP-VKqWLEEr 345 (618)
|++-.-+-.+..+.++..+..+..|. +.+..|+++|..+.. =-..||---+.. +. +..--+-+
T Consensus 252 leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~--------El~~~k~K~e~e~~~~~EelEeaK 323 (859)
T PF01576_consen 252 LEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNA--------ELEQWKKKYEEEAEQRTEELEEAK 323 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh--------HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33333333455555666655544332 334444444432211 124565443332 22 33344456
Q ss_pred hhhHHHHHHHHHHHHHhHH
Q 007087 346 RFLQGEMQQLRDRLAITER 364 (618)
Q Consensus 346 RflQGEmqrLrdKLAiaER 364 (618)
+=|+..++-+.+.+..+..
T Consensus 324 KkL~~~L~el~e~le~~~~ 342 (859)
T PF01576_consen 324 KKLERKLQELQEQLEEANA 342 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777776666644443
No 225
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=47.85 E-value=3.2e+02 Score=27.79 Aligned_cols=126 Identities=25% Similarity=0.385 Sum_probs=70.6
Q ss_pred HHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHH
Q 007087 122 EKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKA 201 (618)
Q Consensus 122 EKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkA 201 (618)
++-++.+..|+..+-.++.|+.+++ .|.||.= -+|.+....-.+|+.||+.|.-
T Consensus 60 ~~aK~l~eEledLk~~~~~lEE~~~-~L~aq~r-------------------------qlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 60 QKAKALEEELEDLKTLAKSLEEENR-SLLAQAR-------------------------QLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhH
Confidence 4455667777788888888888877 4444421 2344444455566666666654
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH-----HHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007087 202 LDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI-----CQEENKILDKMHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 202 LerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI-----cqEEnkiLdk~hRQKvaEVEKLsqTv~ELE 276 (618)
|-.-+ + -...-..+|.-.+..|.+||=+ ||.+..+-++. +-+.+|.
T Consensus 114 l~~e~----------~-------~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t------------~~i~eL~ 164 (193)
T PF14662_consen 114 LLAER----------D-------GLKKRSKELATEKATLQRQLCEFESLICQRDAILSERT------------QQIEELK 164 (193)
T ss_pred HHHhh----------h-------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHH
Confidence 32111 1 1111234555667777777733 44444444443 3344443
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 277 EAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 277 EavLAggAaANAVRdyqrq~~eLneEk~tLerELAR 312 (618)
.+ |--|..=+++|.-|+..|+..|+-
T Consensus 165 ~~----------ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 165 KT----------IEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 334666677778888888887753
No 226
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=47.61 E-value=6.2 Score=44.31 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=0.0
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHH-hHHhhhhHHHHH
Q 007087 338 VKQWLEERRFLQGEMQQLRDRLAI-TERTAKSEAQLK 373 (618)
Q Consensus 338 VKqWLEErRflQGEmqrLrdKLAi-aERtAkaEaQLK 373 (618)
-|.=|++--|+..+|..|++..++ .++.+..|.||+
T Consensus 320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 320 YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665543 345555566655
No 227
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.61 E-value=3e+02 Score=27.36 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=13.5
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHH
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKA 98 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIka 98 (618)
...++..++..+.....++..++.+++.
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~ 105 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQ 105 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444444444433
No 228
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.47 E-value=1.1e+02 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=27.0
Q ss_pred hhhhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhh
Q 007087 227 ASMVDDLQNKNQELMKQIEICQEENK-ILDKMHRQ 260 (618)
Q Consensus 227 A~~V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQ 260 (618)
...++.|+.+|..|.+++.+++|+.+ ++.-|.|-
T Consensus 117 ~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 117 QKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888899999999999999988 55666664
No 229
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.40 E-value=1.3e+02 Score=30.45 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=48.4
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHH-----------Hhh-HHH---HHHHH--------------HHHHHHHHHHHHH
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKAL-----------RLS-ERL---REKAV--------------EELTEELSKVEEK 123 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaL-----------r~s-e~~---kdKAv--------------eel~~el~kldEK 123 (618)
-|.-||+.+|.+.|..|..++.+...- |-. |-| |..-+ .-++++|.-+.+.
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999988887752 111 111 22222 3345677777888
Q ss_pred HHHhHHHhhhhhhhhhhhh
Q 007087 124 LKLAENLIETKNLEIKKIN 142 (618)
Q Consensus 124 Lk~tE~lle~knLEiKkln 142 (618)
...+|..|.+++-|+..|+
T Consensus 176 V~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888888888877664
No 230
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=47.03 E-value=1.5e+02 Score=25.96 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhh
Q 007087 107 EKAVEELTEELSKVEEKLKLAENLIETKNLEIKKIND 143 (618)
Q Consensus 107 dKAveel~~el~kldEKLk~tE~lle~knLEiKklnd 143 (618)
+.-+--+..|..|-|.|...++...++...|+++|+.
T Consensus 30 E~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 30 EQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334456666777777777777777777777777653
No 231
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=47.01 E-value=3.9e+02 Score=28.55 Aligned_cols=33 Identities=42% Similarity=0.493 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007087 85 KDRELGEAQAEIKALRLSERLREKAVEELTEEL 117 (618)
Q Consensus 85 KdrEL~~A~aEIkaLr~se~~kdKAveel~~el 117 (618)
.++.+.+...||..|-..-..=++|++.+..-+
T Consensus 62 L~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl 94 (384)
T PF03148_consen 62 LERELEELDEEIDLLEEEKRRLEKALEALRKPL 94 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 345666677777777666665556655444333
No 232
>PRK10698 phage shock protein PspA; Provisional
Probab=46.87 E-value=3.1e+02 Score=27.35 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=23.1
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHH
Q 007087 175 EAILAPLEAELKLARQEIAKLQDDNKALDRL 205 (618)
Q Consensus 175 eaiiApLeAelk~~r~Ei~kLqddnkALerl 205 (618)
...++.|+.++......+.+|+.+...|+.-
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENK 128 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888777777643
No 233
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=46.65 E-value=99 Score=31.48 Aligned_cols=51 Identities=37% Similarity=0.473 Sum_probs=38.6
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 226 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 226 kA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
++..|.+|.-++.+|++++|..-++-+|=+.+. -+.+|++|..+..+||.+
T Consensus 121 ~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~--~~~~~e~Lk~ek~~le~~ 171 (254)
T PF03194_consen 121 KAEKIDELDEKIGELLKEAEELGEEGDVDEAQK--LMEEVEKLKEEKEELEKE 171 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 466778888888888888888888877776663 367778888877777774
No 234
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=45.68 E-value=5e+02 Score=29.44 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 283 GAAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 283 gAaANAVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
.|.+|-|+.-.++.++|+.+..-|++|.|+.-.+.-
T Consensus 248 aar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 248 AARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677999999999999999999999999887764
No 235
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.59 E-value=2.4e+02 Score=27.91 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHhhcCC
Q 007087 350 GEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGS 390 (618)
Q Consensus 350 GEmqrLrdKLAiaERtAkaEaQLKeK~klRLk~lEe~Lk~~ 390 (618)
..+.+|++-++- +.-.+.|||+.=|..+..-+.-+
T Consensus 131 ~Rl~~L~~~l~~------~dv~~~ek~r~vlea~~~E~~yg 165 (251)
T PF11932_consen 131 ERLARLRAMLDD------ADVSLAEKFRRVLEAYQIEMEYG 165 (251)
T ss_pred HHHHHHHHhhhc------cCCCHHHHHHHHHHHHHHHHHhC
Confidence 445666666633 33445688888777776666544
No 236
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.41 E-value=2.4e+02 Score=25.68 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhchHHHHHHHhhHHHHHHHHHH-----HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 187 LARQEIAKLQDDNKALDRLTKSKEAALLEAER-----TVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 187 ~~r~Ei~kLqddnkALerltKsKEaALleaeR-----~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
.+++++..+......|++-++--+.++.|.+. .|=...-...+-.|...-..+|.+.||.|..+-+-|++
T Consensus 18 ~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lek 92 (121)
T PRK09343 18 QLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEK 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444444332 23333445566678888889999999999977777755
No 237
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.35 E-value=2.8e+02 Score=26.52 Aligned_cols=49 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred HHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHH
Q 007087 191 EIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIE 245 (618)
Q Consensus 191 Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiE 245 (618)
+..+.|+.+.-|+.+.-+-...|-+.+.- +..|.++.......|.+|+.
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~~~E~e------k~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQEKEQE------KVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444433333321 44455555555555555543
No 238
>PRK10698 phage shock protein PspA; Provisional
Probab=44.86 E-value=3.3e+02 Score=27.14 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=28.2
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL 224 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Al 224 (618)
|.-+|--++.+|-.+|+.++..--+.+-+++-+..-+.....-++..+.|+
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al 79 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELAL 79 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666655566555555555555544444444443
No 239
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=43.37 E-value=4e+02 Score=27.70 Aligned_cols=197 Identities=20% Similarity=0.295 Sum_probs=123.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccC-CCCChhHH
Q 007087 98 ALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKD-DDMPPIEA 176 (618)
Q Consensus 98 aLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKD-ddmppiea 176 (618)
++-.-..-|++.|... ..+++++-..+...|.++||-=- . ++. ... ..+|| .
T Consensus 7 a~S~Y~E~ka~lvr~~---~~~~e~~~~~l~~~L~slnLP~~--~----------~~~----------~~~~~~lP~--~ 59 (337)
T cd09234 7 ASSLYSEEKAKLLREV---VSEIEDKDEELDQFLSSLQLDPL--N----------VMD----------MDGQFELPQ--D 59 (337)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCChh--h----------hhc----------cCCCCCCCH--H
Confidence 3344445577777663 66667777778889999998631 1 111 122 23555 4
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHH-----H-------hh--hhHHhhhhhHHHHH
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALA-----K-------AS--MVDDLQNKNQELMK 242 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Ala-----k-------A~--~V~dlQNkN~EL~k 242 (618)
++.-++ +|......|..++....-|..|...-+.-|.++.+.++.--. + .+ ...+|..+...+..
T Consensus 60 l~~~~~-~i~~~~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~ 138 (337)
T cd09234 60 LVERCA-ALSVRPDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKE 138 (337)
T ss_pred HHHHHH-HHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHH
Confidence 444443 244433455666666666666666666666666666654321 1 11 24556666666666
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--------hhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 007087 243 QIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG--------GAAANAVRDYQRKVQEMNEERKTLDRELARAK 314 (618)
Q Consensus 243 QiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAg--------gAaANAVRdyqrq~~eLneEk~tLerELARaK 314 (618)
-++.+...+..|.+.-++-..-+.=|+....+|+..|=.+ ...+..+|..-+++++|..++..++.+| |.+
T Consensus 139 ~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~L-k~k 217 (337)
T cd09234 139 AHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQL-RDA 217 (337)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6666667777665444554555677888888887776332 2356779999999999999999999999 667
Q ss_pred hhhhhhhhh
Q 007087 315 VTANRVATV 323 (618)
Q Consensus 315 v~ANRVA~v 323 (618)
+....|-.+
T Consensus 218 ~~~DDI~~~ 226 (337)
T cd09234 218 IHEDDITSK 226 (337)
T ss_pred hhcCCchHH
Confidence 666666555
No 240
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.25 E-value=5.8e+02 Score=29.49 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=50.5
Q ss_pred HHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhh
Q 007087 129 NLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKS 208 (618)
Q Consensus 129 ~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKs 208 (618)
+.-+...-+.++|.+-.|-.-+.+-|-++ |.- |+|-+++...| ..+.+.+..+.+-.-.|..+...
T Consensus 205 gE~e~L~~e~~rLsn~ekl~~~~~~a~~~-L~g------e~~~~~~~~~l-------~~a~~~l~~~~~~d~~l~~~~~~ 270 (557)
T COG0497 205 GEDEELEEERKRLSNSEKLAEAIQNALEL-LSG------EDDTVSALSLL-------GRALEALEDLSEYDGKLSELAEL 270 (557)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhC------CCCchhHHHHH-------HHHHHHHHHhhccChhHHHHHHH
Confidence 33444555667777666655555444432 321 56666665544 33444444455544444444333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHH-HHHhHHHHHHhhh
Q 007087 209 KEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEIC-QEENKILDKMHRQ 260 (618)
Q Consensus 209 KEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIc-qEEnkiLdk~hRQ 260 (618)
-+.|+.+ |+|+.++....+..|+.+ ++=++|.++|...
T Consensus 271 l~ea~~~--------------l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L 309 (557)
T COG0497 271 LEEALYE--------------LEEASEELRAYLDELEFDPNRLEEVEERLFAL 309 (557)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3333332 345555555555555554 3334455554443
No 241
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.14 E-value=4e+02 Score=27.57 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=51.3
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHH-HHHHHhhHHHHHHHHHHHHHHHHHH---hh--------hhHHhhhhhH
Q 007087 171 MPPIEAILAPLEAELKLARQEIAKLQDDNKA-LDRLTKSKEAALLEAERTVQVALAK---AS--------MVDDLQNKNQ 238 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~kLqddnkA-LerltKsKEaALleaeR~v~~Alak---A~--------~V~dlQNkN~ 238 (618)
.+||.-...+|+.+.|..=.++.+||..... +..|-++| .....|=+.++.|..+ |. -|+-.+++..
T Consensus 94 ~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksK-k~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~ 172 (252)
T cd07675 94 YGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSK-KKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLN 172 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHH
Confidence 4788888888999888888888888886652 23333333 2223333333333333 11 1355566655
Q ss_pred HHHHHHHHHHHHhH-HHHHHhhhH
Q 007087 239 ELMKQIEICQEENK-ILDKMHRQK 261 (618)
Q Consensus 239 EL~kQiEIcqEEnk-iLdk~hRQK 261 (618)
.-....|.|..+.. -|.++|+.+
T Consensus 173 ~~~q~~e~aKn~Y~~~L~~~N~~q 196 (252)
T cd07675 173 LRTHMADESKNEYAAQLQNFNGEQ 196 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566655554 455555554
No 242
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=43.13 E-value=3.7e+02 Score=27.25 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=44.7
Q ss_pred CCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007087 68 SDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLK 125 (618)
Q Consensus 68 sdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk 125 (618)
.||. .-|+-.+++-+.+|..|...+..+......=++=++++.....++.++-.
T Consensus 23 EDp~----~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 23 EDPE----KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred cCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888 45888899999999999999999988888888888888888877776643
No 243
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=43.01 E-value=6.1e+02 Score=29.66 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHH
Q 007087 108 KAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 187 (618)
Q Consensus 108 KAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~ 187 (618)
|...++..++..+...|....+-.+.++.+++....++. .|+.+.- ....+...+.||+.....
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~-~l~~~~~---------------~~~~~~~~~~~l~~~~~~ 238 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERR-VLADSLG---------------NYADLRRNIKPLEGLEST 238 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHhh---------------hhhhHHHhhhhhhhhhhH
Confidence 444555566666666666555555666666665444433 3322211 233344556666665555
Q ss_pred HHHHHHHhhhchH
Q 007087 188 ARQEIAKLQDDNK 200 (618)
Q Consensus 188 ~r~Ei~kLqddnk 200 (618)
.+++|..||.-..
T Consensus 239 ~~~~i~~l~~~l~ 251 (670)
T KOG0239|consen 239 IKKKIQALQQELE 251 (670)
T ss_pred HHHHHHHHHHHHH
Confidence 5555444444333
No 244
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.77 E-value=3.1e+02 Score=26.16 Aligned_cols=28 Identities=43% Similarity=0.440 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 007087 237 NQELMKQIEICQEENKILDKMHRQKVAE 264 (618)
Q Consensus 237 N~EL~kQiEIcqEEnkiLdk~hRQKvaE 264 (618)
|.+|.+||+.+|.+|+-...-+..++.+
T Consensus 53 ~eeLk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 53 NEELKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444443333
No 245
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=42.29 E-value=1.2e+02 Score=34.83 Aligned_cols=71 Identities=27% Similarity=0.319 Sum_probs=46.0
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhh
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKALRLSERLREK-------AVEELTEELSKVEEKLKLAENLIETKNLEIKKIND 143 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdK-------Aveel~~el~kldEKLk~tE~lle~knLEiKklnd 143 (618)
-|++|++.+.--.--+|+.++.+|+.++......+- |-.+++.|++.+.+|..-.+..+..-.-|||++..
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355666666666666677777777777776665553 33566777777777776666666666666666654
No 246
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=41.85 E-value=6.9e+02 Score=29.96 Aligned_cols=193 Identities=23% Similarity=0.339 Sum_probs=0.0
Q ss_pred cHHHHHHHH----HHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH-HHH
Q 007087 181 LEAELKLAR----QEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK-ILD 255 (618)
Q Consensus 181 LeAelk~~r----~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk-iLd 255 (618)
||++++..| +.-.+|.-.-.-||+|-..-.+--.||| -++.|+++|-+|- +|--....+.++..|..-+ =|.
T Consensus 78 le~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae-~Lraala~ae~~R--~~lEE~~q~ELee~q~~Hqeql~ 154 (739)
T PF07111_consen 78 LEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAE-ELRAALAGAEVVR--KNLEEGSQRELEEAQRLHQEQLS 154 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHhhHHHHH--HhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHHHHHHHHHHHHH---HHHhc-hhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccC
Q 007087 256 KMHRQKVAEVEKLTQTVRELEE---AVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDA 331 (618)
Q Consensus 256 k~hRQKvaEVEKLsqTv~ELEE---avLAg-gAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ 331 (618)
.|..---.++..|+..+++||+ ...+. +--++.+..-++...-|.++.+.-..+|..--..+++.=.-|..---++
T Consensus 155 ~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~ 234 (739)
T PF07111_consen 155 SLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPE 234 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcc
Q ss_pred CCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHhh
Q 007087 332 NDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESL 387 (618)
Q Consensus 332 ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLKeK~klRLk~lEe~L 387 (618)
.+--.|--||--|..=||.|++.-+..-=|+ |-++.||..|.+-|
T Consensus 235 ----~~~~~we~Er~~L~~tVq~L~edR~~L~~T~-------ELLqVRvqSLt~IL 279 (739)
T PF07111_consen 235 ----VHSQAWEPEREELLETVQHLQEDRDALQATA-------ELLQVRVQSLTDIL 279 (739)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
No 247
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.79 E-value=4.6e+02 Score=27.94 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhh
Q 007087 108 KAVEELTEELSKVEEKLKLAENLIE 132 (618)
Q Consensus 108 KAveel~~el~kldEKLk~tE~lle 132 (618)
.+.+-+.+++..+..+|...|..|.
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~ 185 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLK 185 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777776665
No 248
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=41.77 E-value=2.2e+02 Score=24.13 Aligned_cols=84 Identities=29% Similarity=0.311 Sum_probs=47.7
Q ss_pred hhHHhhhccHHHHHHHHHHHHHh--------hhchHHHHHHHhhHHHHHHHHHHH---HHHHHHHhh-------------
Q 007087 173 PIEAILAPLEAELKLARQEIAKL--------QDDNKALDRLTKSKEAALLEAERT---VQVALAKAS------------- 228 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kL--------qddnkALerltKsKEaALleaeR~---v~~AlakA~------------- 228 (618)
+++.++.-|+.++..+..=+.-+ ..|...|+.++..|+..+.+.... .+..+.+..
T Consensus 2 ~~~~L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~ 81 (143)
T PF05130_consen 2 AIEELIELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIE 81 (143)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHh
Confidence 55666677777777766433322 236667788888888766655433 222222222
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
.-.+++....+|..-++.|++.|..-..
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ 109 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQ 109 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2255666666666666667666665433
No 249
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.48 E-value=3e+02 Score=28.91 Aligned_cols=113 Identities=22% Similarity=0.345 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHH--hhhccCCCCChhH----HhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHH
Q 007087 148 SMAAQFAAEATLRRV--HAAQKDDDMPPIE----AILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQ 221 (618)
Q Consensus 148 alAAQfAAEAtLRRv--Ha~QKDddmppie----aiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~ 221 (618)
.|-..+.-|.-||-. .+.+..-|+.-|| .+|+.+..++...++.+..+..|..+|+.=++-|-..|.-++..++
T Consensus 135 ~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 135 SLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444422 2333444444443 4788899999999999999999999999999999999999998887
Q ss_pred HHHH-HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh
Q 007087 222 VALA-KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ 260 (618)
Q Consensus 222 ~Ala-kA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQ 260 (618)
+--. |=.-.||...-=.||.++-++|-+--+.|+-++.|
T Consensus 215 sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~q 254 (267)
T PF10234_consen 215 SLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQ 254 (267)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6432 33455888888889999999999988888877665
No 250
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.99 E-value=8e+02 Score=30.51 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=42.5
Q ss_pred hHhhhhhhHHHhh----------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHhH
Q 007087 72 KVELNRLENEVRD----------------KDRELGEAQAEIKALRLSERLREKAVEELTEELS-------KVEEKLKLAE 128 (618)
Q Consensus 72 ~~ElnRLeN~lr~----------------KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~-------kldEKLk~tE 128 (618)
..|+-||-+.|.. ..+|+.+...-|+.|..-....++-|.++++-+- .|.+++..++
T Consensus 410 ~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k 489 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLK 489 (1041)
T ss_pred HHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3566676666542 2334555555566666666666666666555555 5555555556
Q ss_pred HHhhhhhhhhhhhhhHHH
Q 007087 129 NLIETKNLEIKKINDEKR 146 (618)
Q Consensus 129 ~lle~knLEiKklndEKK 146 (618)
..|.+++-++..+..|=.
T Consensus 490 ~~L~~~~~el~~~~ee~~ 507 (1041)
T KOG0243|consen 490 SKLQNKNKELESLKEELQ 507 (1041)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666665555555554443
No 251
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=40.79 E-value=3.9e+02 Score=26.87 Aligned_cols=104 Identities=13% Similarity=0.268 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCC-CChhHHhhhccHHHHHHHHHHHHHhhhchHH----HHHHHhhHHHHHHHHHHH---H
Q 007087 149 MAAQFAAEATLRRVHAAQKDDD-MPPIEAILAPLEAELKLARQEIAKLQDDNKA----LDRLTKSKEAALLEAERT---V 220 (618)
Q Consensus 149 lAAQfAAEAtLRRvHa~QKDdd-mppieaiiApLeAelk~~r~Ei~kLqddnkA----LerltKsKEaALleaeR~---v 220 (618)
+-.|.-..|..|.+|+..=.-. .+||..++.-++...|.+..++.+||++... |++..|.=+.+.-+++.. .
T Consensus 70 iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~ 149 (237)
T cd07657 70 IMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKF 149 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777787553333 4788888999999999999999999988754 444445555555554432 2
Q ss_pred HHHHHHhh----hhHHhhhhhHHHHHHHHHHHHHhH
Q 007087 221 QVALAKAS----MVDDLQNKNQELMKQIEICQEENK 252 (618)
Q Consensus 221 ~~AlakA~----~V~dlQNkN~EL~kQiEIcqEEnk 252 (618)
+.|..... .|+..+++.++....+.+|+.|.-
T Consensus 150 e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~ 185 (237)
T cd07657 150 EEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYV 185 (237)
T ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 456777777776666666666554
No 252
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.58 E-value=4.4e+02 Score=27.35 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=32.1
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHhhhc--cCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHH
Q 007087 140 KINDEKRASMAAQFAAEATLRRVHAAQ--KDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALD 203 (618)
Q Consensus 140 klndEKK~alAAQfAAEAtLRRvHa~Q--KDddmppieaiiApLeAelk~~r~Ei~kLqddnkALe 203 (618)
...++-|..|-.||..--|.=|.-|-- .+=-+--++.++.-|+..+...+.+-+.|.+....++
T Consensus 111 ~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 111 TADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888776665533211 0001233444555555555444444444444443333
No 253
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=40.53 E-value=3.2e+02 Score=26.50 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 007087 180 PLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHR 259 (618)
Q Consensus 180 pLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hR 259 (618)
-+|.+++..+.++..+......-+..+..+...|..-++ +|..+..+|..+.+-+.+-..-++.++.
T Consensus 68 ~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~-------------~l~~~~~~l~~~~~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 68 ELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREE-------------ELEKKEEELEQRKEELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888777666555555555555544444442 3344444444444444444444445555
Q ss_pred hHHHHHHHHH
Q 007087 260 QKVAEVEKLT 269 (618)
Q Consensus 260 QKvaEVEKLs 269 (618)
+...+.++.+
T Consensus 135 ~~~~~Le~iA 144 (201)
T PF12072_consen 135 EQQQELEEIA 144 (201)
T ss_pred HHHHHHHHHh
Confidence 5444444433
No 254
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.35 E-value=1.8e+02 Score=30.72 Aligned_cols=134 Identities=31% Similarity=0.390 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHH
Q 007087 105 LREKAVEELTEELSKVEEKLKLAE-NLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEA 183 (618)
Q Consensus 105 ~kdKAveel~~el~kldEKLk~tE-~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeA 183 (618)
|-+|-.++|+.-+..++ ++|.-= --|++..+|+ +..|=|.|| --|+..||+||.. + .
T Consensus 74 LA~kf~eeLrg~VGhiE-RmK~PiGHDvEhiD~el--vrkEl~nAl--vRAGLktL~~v~~---------~--------~ 131 (290)
T COG4026 74 LAEKFFEELRGMVGHIE-RMKIPIGHDVEHIDVEL--VRKELKNAL--VRAGLKTLQRVPE---------Y--------M 131 (290)
T ss_pred HHHHHHHHHHHhhhhhh-eeccCCCCCccccCHHH--HHHHHHHHH--HHHHHHHHhccch---------h--------h
Confidence 33455555554444332 222211 1244444444 333434343 4689999999532 1 3
Q ss_pred HHHHHHHHHHHhhhchHH-HHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHH
Q 007087 184 ELKLARQEIAKLQDDNKA-LDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKV 262 (618)
Q Consensus 184 elk~~r~Ei~kLqddnkA-LerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKv 262 (618)
|||--..| .|- |+-+.+-||.-+.+.+ ++|-...++...|+...-||-.|+-|.+.--
T Consensus 132 d~ke~~ee-------~kekl~E~~~EkeeL~~ele--------------ele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 132 DLKEDYEE-------LKEKLEELQKEKEELLKELE--------------ELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 44443333 333 5566666666665554 4455555555566666788899999988888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007087 263 AEVEKLTQTVRELEEAVLA 281 (618)
Q Consensus 263 aEVEKLsqTv~ELEEavLA 281 (618)
-||.+|.....|||+-|..
T Consensus 191 ~ev~~L~~r~~ELe~~~El 209 (290)
T COG4026 191 GEVYDLKKRWDELEPGVEL 209 (290)
T ss_pred hHHHHHHHHHHHhcccccc
Confidence 8999999999999887643
No 255
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=40.31 E-value=1.3e+02 Score=27.80 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Q 007087 240 LMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGG 283 (618)
Q Consensus 240 L~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAgg 283 (618)
|.-.+|.+|...+-++.. .|.+.+..++.+|...+.+..
T Consensus 72 LLDElE~~~~~i~~~~~~-----~e~~~~a~~~~~l~~~Le~ae 110 (139)
T PF13935_consen 72 LLDELERAQQRIAELEQE-----CENEDIALDVQKLRVELEAAE 110 (139)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666555 677788888888777666553
No 256
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.88 E-value=70 Score=32.63 Aligned_cols=35 Identities=34% Similarity=0.602 Sum_probs=23.5
Q ss_pred CchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhH
Q 007087 69 DPVKVELNRLENEVRDKDRELGEAQAEIKALRLSE 103 (618)
Q Consensus 69 dPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se 103 (618)
|-.+-++.-|+.+++.+..+|..|+....+|+-+-
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777777777777777777766443
No 257
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.54 E-value=1.7e+02 Score=28.90 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=16.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
...+++.|..|..++...+..|+-|
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666665
No 258
>PRK10780 periplasmic chaperone; Provisional
Probab=38.87 E-value=2.4e+02 Score=26.42 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=39.2
Q ss_pred CCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHH
Q 007087 170 DMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERT 219 (618)
Q Consensus 170 dmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~ 219 (618)
.+|..-.+-+-||++.+-+..++..++.+...+..-+..+.+.+-++++.
T Consensus 37 ~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~ 86 (165)
T PRK10780 37 QVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRT 86 (165)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHH
Confidence 57888888899999999999999999888887777666666666555543
No 259
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.81 E-value=4.2e+02 Score=27.23 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHH
Q 007087 225 AKASMVDDLQNKNQELMKQIEICQEE 250 (618)
Q Consensus 225 akA~~V~dlQNkN~EL~kQiEIcqEE 250 (618)
+++-.++=|++.+.+|.+|||.|.-|
T Consensus 119 ek~e~~~wl~~~Id~L~~QiE~~E~E 144 (233)
T PF04065_consen 119 EKEEARDWLKDSIDELNRQIEQLEAE 144 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666544
No 260
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=38.70 E-value=3.8e+02 Score=26.09 Aligned_cols=111 Identities=24% Similarity=0.334 Sum_probs=67.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH---HhhhHHHHHHHHHHHHHHHH
Q 007087 200 KALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK---MHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 200 kALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk---~hRQKvaEVEKLsqTv~ELE 276 (618)
+.++.+-.||+- |..++..--.=++.+++.+.+++.++...-.+-.-|++ -.|++.+||.+==..- .|
T Consensus 6 ~ti~~ie~sK~q-------If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y--sE 76 (159)
T PF05384_consen 6 KTIDTIESSKEQ-------IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY--SE 76 (159)
T ss_pred HHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CH
Confidence 445555566653 44555555556788888888888888877766665544 4566777776532211 34
Q ss_pred HHHHhc-hhhHHH---HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhh
Q 007087 277 EAVLAG-GAAANA---VRDYQRKVQEMNEERKTLDRELARAKVTANR 319 (618)
Q Consensus 277 EavLAg-gAaANA---VRdyqrq~~eLneEk~tLerELARaKv~ANR 319 (618)
+-|-.. ..|-+. +--++.+-..|...+..|++-|.+.+.++.|
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 333333 3445666677777777777777766666554
No 261
>PRK11519 tyrosine kinase; Provisional
Probab=37.99 E-value=5.4e+02 Score=29.50 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHH
Q 007087 208 SKEAALLEAERTVQVALAKASMVDDLQNKNQELM 241 (618)
Q Consensus 208 sKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~ 241 (618)
.+|..+.+.+|.++.+- .+.+.|-++.+|+.
T Consensus 367 ~~e~~~~~L~Re~~~~~---~lY~~lL~r~~e~~ 397 (719)
T PRK11519 367 KTQQEIVRLTRDVESGQ---QVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 35666666676655543 36677777777753
No 262
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.94 E-value=4.1e+02 Score=26.29 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=54.3
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRA 147 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~ 147 (618)
.++.+.+..+.....=...|+.|..+-.....-..-+..+..++.-+.....-.+.++.+.+-+|..|+.....
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666777777777766666666777788888888888888888888888888887766653
No 263
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.66 E-value=5.1e+02 Score=27.22 Aligned_cols=141 Identities=23% Similarity=0.325 Sum_probs=78.1
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 256 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk 256 (618)
=++-|+.++.-....|.+.|++-..|--..- +|- ..||.-+..|.++++.|+.+ -|+|..-|..
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EY------------PvK~vqIa~L~rqlq~lk~~---qqdEldel~e 145 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEY------------PVKAVQIANLVRQLQQLKDS---QQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh------------hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455666666666666666666655533322 222 22333344455555555443 2344444444
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCcc
Q 007087 257 MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVM 336 (618)
Q Consensus 257 ~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVm 336 (618)
|.+. |..+|+..+.+=.+.|+. -++.++++-|+.-+-.+..+...+..|+-+-+.
T Consensus 146 ~~~~---el~~l~~~~q~k~~~il~-~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re--------------------- 200 (258)
T PF15397_consen 146 MRQM---ELASLSRKIQEKKEEILS-SAAEKTQSPMQPALLQRTLENQVMQKEIVQFRE--------------------- 200 (258)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4333 556777777776677763 256677888887766666666666666633222
Q ss_pred chhhHHHHhhhhHHHHHHHHHH
Q 007087 337 PVKQWLEERRFLQGEMQQLRDR 358 (618)
Q Consensus 337 PVKqWLEErRflQGEmqrLrdK 358 (618)
.+.+|.++-..|..|+++|+-.
T Consensus 201 ~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2335556666666666666644
No 264
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=36.72 E-value=1.5e+02 Score=32.05 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=38.9
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh
Q 007087 78 LENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIK 139 (618)
Q Consensus 78 LeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiK 139 (618)
|++.+++.+..|.+...|+.- +...|.-..||..+.|.+|...|++=.
T Consensus 180 Lqkk~~~l~~~l~~~~~eL~~--------------~~k~L~faqekn~LlqslLddaniD~~ 227 (323)
T PF08537_consen 180 LQKKIDELEERLNDLEKELEI--------------TKKDLKFAQEKNALLQSLLDDANIDSE 227 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence 678888888888887776543 567788899999999999999888753
No 265
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.48 E-value=2.5e+02 Score=23.34 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=44.3
Q ss_pred hhhhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHHHHH
Q 007087 227 ASMVDDLQNKNQELMKQIEICQEENK-ILDKMHRQKVAEVEKLTQTVRELEEAVLAGGA--AANAVRDYQRKVQEM 299 (618)
Q Consensus 227 A~~V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQKvaEVEKLsqTv~ELEEavLAggA--aANAVRdyqrq~~eL 299 (618)
-.++.-|+.+-.+|..+|+-.+++.. .|+...-+--..+.+|+.++..+++++..|.. -....+..-.++.++
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 34555566667777777777554443 55554455556778888888888888776532 223344444444443
No 266
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.40 E-value=1.7e+02 Score=27.80 Aligned_cols=10 Identities=10% Similarity=0.401 Sum_probs=5.1
Q ss_pred hhhhhhHHHh
Q 007087 74 ELNRLENEVR 83 (618)
Q Consensus 74 ElnRLeN~lr 83 (618)
=++|+-+.++
T Consensus 116 ~I~r~~~li~ 125 (192)
T PF05529_consen 116 VIRRVHSLIK 125 (192)
T ss_pred HHHHHHHHHH
Confidence 3555555544
No 267
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.24 E-value=3.5e+02 Score=32.49 Aligned_cols=105 Identities=21% Similarity=0.183 Sum_probs=57.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCC
Q 007087 97 KALRLSERLREKAVEELTEELS----KVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMP 172 (618)
Q Consensus 97 kaLr~se~~kdKAveel~~el~----kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmp 172 (618)
+-|+...-+|++.+++.-..+. -+.+++..-|..+++.+.++.++..++.
T Consensus 512 ~~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l-------------------------- 565 (809)
T KOG0247|consen 512 EILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENL-------------------------- 565 (809)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh--------------------------
Confidence 4466666677777766544433 2344555555566666666665554443
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 007087 173 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASM 229 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~ 229 (618)
-++--|+++|+. .+..+|..|.++..+-..-+..|...+--+.+.++.+++.-..
T Consensus 566 ~~e~~~~i~E~~--~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~~~~~~~t~~ 620 (809)
T KOG0247|consen 566 TTEYSIEILEST--EYEEEIEALDQELEEQKMELQQKFSEKKKAMAKVRGILANTSP 620 (809)
T ss_pred hhhhhhhhhhcc--hhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhhccccCCCch
Confidence 234456667766 5666666666555554444444444444445555555555554
No 268
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=36.24 E-value=4.5e+02 Score=26.23 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhccCCCCC
Q 007087 154 AAEATLRRVHAAQKDDDMP 172 (618)
Q Consensus 154 AAEAtLRRvHa~QKDddmp 172 (618)
-|+..+.|.+.-.+..-++
T Consensus 115 ~a~~~~~R~~~L~~~g~iS 133 (327)
T TIGR02971 115 TAQREVDRYRSLFRDGAVS 133 (327)
T ss_pred HHHHHHHHHHHHHHcCCcc
Confidence 3455566655555444444
No 269
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.14 E-value=2.3e+02 Score=22.71 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHH
Q 007087 202 LDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKI 253 (618)
Q Consensus 202 LerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnki 253 (618)
..+..++++||---=+|..+-....-.-|..|+..|..|..++.....++.-
T Consensus 7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666665555555555566666666666665555555443
No 270
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=35.93 E-value=4e+02 Score=26.31 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCC--CCChhHHhhhccHHHHHHHHH
Q 007087 113 LTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDD--DMPPIEAILAPLEAELKLARQ 190 (618)
Q Consensus 113 l~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDd--dmppieaiiApLeAelk~~r~ 190 (618)
-.--..-|+.-+...+..|....-+|-.||-.+| ..|..+-.+|+.+...-++- ...-|+..+.-||++|+..|.
T Consensus 134 W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK---~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 134 WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERK---RRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566677778888888889999999998 46777777787765554443 246688888899998888888
Q ss_pred HHHHhhhc
Q 007087 191 EIAKLQDD 198 (618)
Q Consensus 191 Ei~kLqdd 198 (618)
+-..+++.
T Consensus 211 ~~~~~~~~ 218 (221)
T PF05700_consen 211 KAAELKEN 218 (221)
T ss_pred HHHHHhcc
Confidence 77777654
No 271
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=35.39 E-value=8.7e+02 Score=29.27 Aligned_cols=219 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh----------------hhhhhhhhh
Q 007087 78 LENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIE----------------TKNLEIKKI 141 (618)
Q Consensus 78 LeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle----------------~knLEiKkl 141 (618)
|-..|.-..+++-+-...+-+...++.---+.|++|..+|.. |+++-+|-.+- .+.+++|++
T Consensus 441 l~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~--EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~ 518 (786)
T PF05483_consen 441 LTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQ--EKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ 518 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred hhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHH
Q 007087 142 NDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQ 221 (618)
Q Consensus 142 ndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~ 221 (618)
.+.|...-+-+.-+-+ .|..||..=...|++...+.+..+----=++.|-..--+-.|.+.
T Consensus 519 ----qedi~~~k~qee~~~k---------------qie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e 579 (786)
T PF05483_consen 519 ----QEDINNSKKQEEKMLK---------------QIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIE 579 (786)
T ss_pred ----HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHH
Q ss_pred HHHHHhhhh-HHhhhhhHHHHHHHHH-------HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHH
Q 007087 222 VALAKASMV-DDLQNKNQELMKQIEI-------CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA-VRDY 292 (618)
Q Consensus 222 ~AlakA~~V-~dlQNkN~EL~kQiEI-------cqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANA-VRdy 292 (618)
.-..+.... .-+.|+...|.||||. .|.|||.|.|=---...-+.-+.--|..|++-+...----+. ..-|
T Consensus 580 ~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~ 659 (786)
T PF05483_consen 580 CEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKY 659 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhh
Q 007087 293 QRKVQEMNEERKTLDRELARAKVTA 317 (618)
Q Consensus 293 qrq~~eLneEk~tLerELARaKv~A 317 (618)
+..+..=.---..|.-|+..+|++|
T Consensus 660 ~keie~K~~~e~~L~~EveK~k~~a 684 (786)
T PF05483_consen 660 QKEIESKSISEEELLGEVEKAKLTA 684 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
No 272
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=35.37 E-value=38 Score=24.14 Aligned_cols=20 Identities=45% Similarity=0.802 Sum_probs=18.1
Q ss_pred hhhhhhHHHhhhhHHHHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQ 93 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~ 93 (618)
|++||.+.++|.+++|.++.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999998874
No 273
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.03 E-value=5.1e+02 Score=26.44 Aligned_cols=96 Identities=31% Similarity=0.449 Sum_probs=68.2
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQF 153 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQf 153 (618)
||.=|--+|||---|+..=-.||-+||.+ +.+++.++...+..+..+..-+..|++|+....+|=....
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~q-------l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~---- 79 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQ-------LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK---- 79 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh----
Confidence 56667888999888888888999999985 4477888888888888888888999999988777632111
Q ss_pred HHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHh
Q 007087 154 AAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKL 195 (618)
Q Consensus 154 AAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kL 195 (618)
.|+.+-| --+.+|+++|.-.|.+...+
T Consensus 80 -~Ea~lLr--------------ekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 80 -NEAELLR--------------EKLGQLEAELAELREELACA 106 (202)
T ss_pred -CHHHHhh--------------hhhhhhHHHHHHHHHHHHhh
Confidence 1222222 12666777666666655554
No 274
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.89 E-value=2.9e+02 Score=26.53 Aligned_cols=59 Identities=32% Similarity=0.559 Sum_probs=32.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTL 306 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tL 306 (618)
+.+|-....+|.+-|+..++ |.+--..|..|.+++..|++- ++++.+++.++..+..++
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~--------hq~~~~~I~~L~~e~~~ld~~----------i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQE--------HQENQARIQQLRAEIEELDEQ----------IRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443 555556677777777777763 345555554444444433
No 275
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.51 E-value=1.8e+02 Score=29.81 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=50.8
Q ss_pred HhhhhhhHHHhhhhHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHH
Q 007087 73 VELNRLENEVRDKDRELG--EAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMA 150 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~--~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alA 150 (618)
+=+.|+-+.++.--...+ .|+.+..+|+-.....-+ +.+|..++.+++...+..++.+..++++....+. +|-
T Consensus 111 lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~-al~ 185 (216)
T KOG1962|consen 111 LVIRRLHTLLRELATLRANEKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVD-ALK 185 (216)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 456788888776655443 566777777766665444 6677777777777777788777777777655443 444
Q ss_pred HHH
Q 007087 151 AQF 153 (618)
Q Consensus 151 AQf 153 (618)
=|+
T Consensus 186 Kq~ 188 (216)
T KOG1962|consen 186 KQS 188 (216)
T ss_pred HHH
Confidence 443
No 276
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=34.19 E-value=1.1e+02 Score=33.63 Aligned_cols=65 Identities=28% Similarity=0.318 Sum_probs=49.6
Q ss_pred ChhHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007087 58 DNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEE 122 (618)
Q Consensus 58 ~~~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldE 122 (618)
||+--|++..-|-.+.+|..++.+|-+--||-.+-.+|++++|.+--.=.--++||.++|+.-|+
T Consensus 139 DNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRde 203 (405)
T KOG2010|consen 139 DNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDE 203 (405)
T ss_pred cccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788889999999999999999999999999999987665555555566555554443
No 277
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=33.96 E-value=78 Score=26.76 Aligned_cols=39 Identities=36% Similarity=0.539 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHHHHHHhH-HHHHHhhhHHHHHHHHHHHHHHH
Q 007087 233 LQNKNQELMKQIEICQEENK-ILDKMHRQKVAEVEKLTQTVREL 275 (618)
Q Consensus 233 lQNkN~EL~kQiEIcqEEnk-iLdk~hRQKvaEVEKLsqTv~EL 275 (618)
|+++++-+.+-|.-.|+|-. .|..+| +||++|.+.-.+|
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH----~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLH----AEIERLQKRNKDL 40 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcccc
Confidence 57788889999999999887 687666 6899999887775
No 278
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=33.71 E-value=19 Score=30.68 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=30.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhhccccc--ccchhHH-HHHHHHh
Q 007087 505 TEDSVPGVLYDLLQKEVVALRKAGHEKDQS--LKDKDDA-IEILAKK 548 (618)
Q Consensus 505 ~~D~Vsg~LYD~LQKEVi~LRKa~~eKdqs--LkdKdda-IeML~KK 548 (618)
+.+++.|+|.|+|++.|++..-....+... -.||-.. |.++.+|
T Consensus 14 ~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~K 60 (83)
T cd08325 14 GKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVDSVTEK 60 (83)
T ss_pred hHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 458999999999999999998777666643 3444333 3444444
No 279
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.50 E-value=4.5e+02 Score=25.41 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=21.5
Q ss_pred hhHHHH--HHHHHHHHHHhhhhcccccccchhHHHHHHHHhHhh
Q 007087 510 PGVLYD--LLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDT 551 (618)
Q Consensus 510 sg~LYD--~LQKEVi~LRKa~~eKdqsLkdKddaIeML~KKVdt 551 (618)
.-|.|. +|-+-|.-|+-.+.-.=. +-|-.+-+..|..-+.+
T Consensus 255 ~~f~~~v~lLn~nI~~L~~~q~~~~~-~l~~~~~l~nl~~~l~~ 297 (302)
T PF10186_consen 255 QRFEYAVFLLNKNIAQLCFSQGIDVP-LLDPRDTLGNLLNLLWS 297 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC-cCCchhhHHHHHHHHhh
Confidence 344443 678888888874433322 33334445554444443
No 280
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=33.46 E-value=60 Score=27.73 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=31.0
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHh
Q 007087 171 MPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTK 207 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~kLqddnkALerltK 207 (618)
.++....+..|+++|+.++.+++.+++.+.+++..++
T Consensus 65 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 65 KESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999999876553
No 281
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=33.43 E-value=1.7e+02 Score=27.48 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=35.2
Q ss_pred cCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHhHHHhhh
Q 007087 66 HGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVE--EKLKLAENLIET 133 (618)
Q Consensus 66 hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kld--EKLk~tE~lle~ 133 (618)
|..|+|-.||.+||++|+.-- -.+..-|.+.+.-..+++..++ .++....++|++
T Consensus 33 ~eDDEI~aeLR~lQ~eLr~~~-------------~~N~~rk~rL~~~~~e~ma~QE~~~~l~~lD~~V~~ 89 (131)
T PF10198_consen 33 REDDEISAELRRLQAELREQS-------------AHNNARKKRLLKIAKEEMARQEYKRILDDLDKQVEQ 89 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999998632 1233444455555555554444 555666666664
No 282
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=33.39 E-value=7.4e+02 Score=27.84 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHH
Q 007087 284 AAANAVRDYQRKVQ 297 (618)
Q Consensus 284 AaANAVRdyqrq~~ 297 (618)
-++.-||.|.....
T Consensus 164 ~~~~~~~~~~~~~~ 177 (514)
T TIGR03319 164 EAAKLIKEIEEEAK 177 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 283
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.37 E-value=8.6e+02 Score=28.59 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 007087 286 ANAVRDYQRKVQEMNEERKTLDRELARAKV 315 (618)
Q Consensus 286 ANAVRdyqrq~~eLneEk~tLerELARaKv 315 (618)
-|.+-+..+.+.++.+....++..+.....
T Consensus 416 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (908)
T COG0419 416 EKELEELERELEELEEEIKKLEEQINQLES 445 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777777766443
No 284
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.22 E-value=1.1e+03 Score=29.65 Aligned_cols=127 Identities=21% Similarity=0.375 Sum_probs=85.0
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH---HH
Q 007087 178 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK---IL 254 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk---iL 254 (618)
+--|.-++.+-+.|+..|--...-|-|-+-.-|+.|.+..-.|+.||---.||+-|-.+|++|...+-...|+-- -|
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888888999999999999999999999999999999888654433333222 22
Q ss_pred HHH-------hhhHH----HHHHHHHHHHHHHHHHHHhc-hhhH---HHHHHHHHHHHHHHHHHh
Q 007087 255 DKM-------HRQKV----AEVEKLTQTVRELEEAVLAG-GAAA---NAVRDYQRKVQEMNEERK 304 (618)
Q Consensus 255 dk~-------hRQKv----aEVEKLsqTv~ELEEavLAg-gAaA---NAVRdyqrq~~eLneEk~ 304 (618)
+-| +|+-+ -||+++..-++||+--|-|. ..+. -.+-.|+..+..||+...
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlq 542 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQ 542 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222 23322 26777777777777666654 2222 234444444444444433
No 285
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.02 E-value=2.3e+02 Score=30.25 Aligned_cols=37 Identities=35% Similarity=0.447 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHh
Q 007087 512 VLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKK 548 (618)
Q Consensus 512 ~LYD~LQKEVi~LRKa~~eKdqsLkdKddaIeML~KK 548 (618)
|....|..||-.|.|.-|+|||-+-+||--|--|--+
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 5667789999999999999999999999888776543
No 286
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=32.99 E-value=3.2e+02 Score=25.95 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=22.9
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHH
Q 007087 173 PIEAILAPLEAELKLARQEIAKLQDDNKALDR 204 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kLqddnkALer 204 (618)
-++..|.-|+.=|..-+.+|.+|.-|+-++.+
T Consensus 101 ~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 101 NQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777778888888877777665
No 287
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=32.93 E-value=4.9e+02 Score=25.63 Aligned_cols=133 Identities=21% Similarity=0.264 Sum_probs=83.6
Q ss_pred HhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q 007087 62 MTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLS-----ERLREKAVEELTEELSKVEEKLKLAENLIETKNL 136 (618)
Q Consensus 62 ~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~s-----e~~kdKAveel~~el~kldEKLk~tE~lle~knL 136 (618)
+.+|..-+=+.-...-|+..+..-..++...+.+|..|+.. +....--+.+|...|......|......|...|-
T Consensus 27 l~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~ 106 (240)
T PF12795_consen 27 LSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENS 106 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677777888888888888888888888554 3444556889999999999999999999888888
Q ss_pred hhhhhhhHHHHhHHHHHHHHH---HHHHHhhhccCCC-CChhHHhhhccHHHHHHHHHHHHH
Q 007087 137 EIKKINDEKRASMAAQFAAEA---TLRRVHAAQKDDD-MPPIEAILAPLEAELKLARQEIAK 194 (618)
Q Consensus 137 EiKklndEKK~alAAQfAAEA---tLRRvHa~QKDdd-mppieaiiApLeAelk~~r~Ei~k 194 (618)
.+..+.+-=..+-..+..+-. .++....+...++ .|-.++...-|++++-....++.-
T Consensus 107 ~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~ 168 (240)
T PF12795_consen 107 QLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEM 168 (240)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 888777654434333333332 2333333333333 333344555555555544444433
No 288
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.88 E-value=2.4e+02 Score=29.38 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhh
Q 007087 112 ELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 112 el~~el~kldEKLk~tE~lle~ 133 (618)
+...+|..+++++..++..++.
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 289
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.84 E-value=3.5e+02 Score=23.86 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=26.2
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHH
Q 007087 179 APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERT 219 (618)
Q Consensus 179 ApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~ 219 (618)
-|++.-++.....+..|.+..+.|..-+..+...+...+..
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777666666666665555544433
No 290
>PLN02320 seryl-tRNA synthetase
Probab=32.75 E-value=2e+02 Score=32.40 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=37.3
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHhHHHh
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREK--AVEELTEELSKVEEKLKLAENLI 131 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdK--Aveel~~el~kldEKLk~tE~ll 131 (618)
|.|.-..+|..|.++.|....++...++|..++--.-..+.+ -.++|.++++.+.++++..|..+
T Consensus 87 ~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~ 153 (502)
T PLN02320 87 NSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDL 153 (502)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334335677778888888888888777777665443322111 23455555555555555554443
No 291
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=32.61 E-value=2.2e+02 Score=31.22 Aligned_cols=70 Identities=21% Similarity=0.523 Sum_probs=57.4
Q ss_pred hhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 007087 64 LLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRL---SERLREKAVEELTEELSKVEEKLKLAENLIETK 134 (618)
Q Consensus 64 ~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~---se~~kdKAveel~~el~kldEKLk~tE~lle~k 134 (618)
+|+..||..+.+.=++.-+.+.+.++...+..+..+.. ...++ .-++.+..++..|.+|+..+++.++..
T Consensus 154 ~m~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 154 LMGDNDPRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELK-SDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred EeecCCcchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34559999999999999999999999988888888764 33333 557888899999999999999888764
No 292
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=32.45 E-value=64 Score=29.32 Aligned_cols=27 Identities=37% Similarity=0.690 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Q 007087 237 NQELMKQIEICQEENKILDKMHRQKVAEVEK 267 (618)
Q Consensus 237 N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEK 267 (618)
.-||++|+.-..||..+| |.|++|||+
T Consensus 3 ~aeLR~qLqFvEEEa~Ll----RRkl~ele~ 29 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELL----RRKLSELED 29 (96)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 458999999999999999 888888764
No 293
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.27 E-value=8.9e+02 Score=28.47 Aligned_cols=174 Identities=23% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCC--CCChhHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHH
Q 007087 18 STGVTATPAPPPLMSSASFKEGGGGRSSSRRRPVRPSF--DADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAE 95 (618)
Q Consensus 18 ~~~~~~~~~~~~l~~~~sf~~~~~~~~~~r~~~~r~~~--~~~~~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aE 95 (618)
...++..|..+......+|-..-+.-.. |.+.+|-+ ..+ ..+.|.-.|..++
T Consensus 487 ~~~~~~~~~~~l~~~~~sF~~~Ik~lL~--r~~~qPill~s~~-------k~~~p~~~E~l~l----------------- 540 (717)
T PF10168_consen 487 DSDSTESPLKPLAESPPSFEKHIKSLLQ--RSSSQPILLKSSD-------KSSSPSPQECLEL----------------- 540 (717)
T ss_pred CCCcccccccccccccchHHHHHHHHhc--CCCCCCeecCCCc-------cccCCCCHHHHHH-----------------
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhH
Q 007087 96 IKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIE 175 (618)
Q Consensus 96 IkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppie 175 (618)
-.++++.+++.=|.....--..+..+......+.++.--+|..+.++++ .-+--|+.
T Consensus 541 --L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~---~l~~~ae~------------------ 597 (717)
T PF10168_consen 541 --LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERK---SLRESAEK------------------ 597 (717)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------------------
Q ss_pred HhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh-HHhhhhhHHHHHHHH
Q 007087 176 AILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMV-DDLQNKNQELMKQIE 245 (618)
Q Consensus 176 aiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V-~dlQNkN~EL~kQiE 245 (618)
|...+..++.--++|..-...+=+++..+---|-.|||.+..-|..-... ..|++...+++++++
T Consensus 598 -----LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 598 -----LAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 294
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.24 E-value=1.2e+02 Score=30.62 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHH
Q 007087 182 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAE 217 (618)
Q Consensus 182 eAelk~~r~Ei~kLqddnkALerltKsKEaALleae 217 (618)
...|+..+.+|.-+.+....|+.++++|...|...+
T Consensus 159 ~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 159 GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346777788888888888999999999998886543
No 295
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=32.02 E-value=6.7e+02 Score=29.24 Aligned_cols=96 Identities=24% Similarity=0.331 Sum_probs=46.9
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhhhHHhhh-h---hHHHHHHHHHHHHHhHH
Q 007087 180 PLEAELKLARQEIAKLQDDNKALDR--LTKSKEAALLEAERTVQVALAKASMVDDLQN-K---NQELMKQIEICQEENKI 253 (618)
Q Consensus 180 pLeAelk~~r~Ei~kLqddnkALer--ltKsKEaALleaeR~v~~AlakA~~V~dlQN-k---N~EL~kQiEIcqEEnki 253 (618)
-||+|||.-=.-.+.|.|.+|..-. =+|-| ..|+...|-|+.++++=..|+-.-. + +.-|.. ..+
T Consensus 42 K~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK-~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~--------~~k 112 (575)
T KOG2150|consen 42 KLESDLKKEIKKLQRLRDQIKTWQSSSDIKDK-DSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSA--------AEK 112 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccH-HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccc--------ccc
Confidence 4777776532233333355554432 23444 5677777777777776666643100 0 000000 001
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhchh
Q 007087 254 LDKMHRQKVAEVEKLTQTVRELEEAVLAGGA 284 (618)
Q Consensus 254 Ldk~hRQKvaEVEKLsqTv~ELEEavLAggA 284 (618)
||=-.+-|--=+.=|+++|.|||.-|-.-.|
T Consensus 113 lDPkEkek~d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 113 LDPKEKEKRDTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333444455567777777766665554
No 296
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=31.95 E-value=67 Score=27.33 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=24.1
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
=|+-|.+++.||+.++...+.||.+|
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999
No 297
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.87 E-value=3.9e+02 Score=24.12 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH--------------------------------
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEE-------------------------------- 277 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEE-------------------------------- 277 (618)
+..++.+.+.|..+|+..+..-.-| ...+.|+...-.|+..|..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l----~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEEL----QASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Q ss_pred -HHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhh
Q 007087 278 -AVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVV 324 (618)
Q Consensus 278 -avLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vv 324 (618)
-+..-=...-|+.++.+++..|+.....|..+|+...--.+.+.-++
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 298
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.75 E-value=58 Score=33.21 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=12.2
Q ss_pred hhccHHHHHHHHHHHHHhhhch
Q 007087 178 LAPLEAELKLARQEIAKLQDDN 199 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddn 199 (618)
.+-||.|++...++|..|+.++
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev 116 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREV 116 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456776666655555444433
No 299
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=31.44 E-value=1.7e+02 Score=26.71 Aligned_cols=48 Identities=33% Similarity=0.441 Sum_probs=35.8
Q ss_pred HHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 007087 188 ARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI 246 (618)
Q Consensus 188 ~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI 246 (618)
.+.+|++||+..|.++. -+|||+-+.|+..- .-+|..-+-||.+-+|.
T Consensus 7 I~~eIekLqe~lk~~e~---------keaERigr~AlKaG--L~eieI~d~eL~~~Fee 54 (92)
T PF07820_consen 7 IREEIEKLQEQLKQAET---------KEAERIGRIALKAG--LGEIEISDAELQAAFEE 54 (92)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcc--cccccCCHHHHHHHHHH
Confidence 46799999999988875 68999999998643 34566666777665554
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.26 E-value=4.5e+02 Score=24.69 Aligned_cols=172 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHH---HHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 178 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEA---ALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddnkALerltKsKEa---ALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
+.-...+|-..|-....++-...-++..++.||- .|.... .+-||..|+.|.++|| |-|+=|
T Consensus 1 m~~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iD------------FeqLkien~~l~~kIe---ERn~eL 65 (177)
T PF13870_consen 1 MRQKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLID------------FEQLKIENQQLNEKIE---ERNKEL 65 (177)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH------------HHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCC
Q 007087 255 DKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDK 334 (618)
Q Consensus 255 dk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndk 334 (618)
-+|...-..-|--|++.=..|-....-....-.-+.+.+..+..+.++...+..+....+..-++ .-.-.+--....
T Consensus 66 ~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~---l~~~~~~~~~P~ 142 (177)
T PF13870_consen 66 LKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK---LRQQGGLLGVPA 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCCcH
Q ss_pred cc-chhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 007087 335 VM-PVKQWLEERRFLQGEMQQLRDRLAITERTAK 367 (618)
Q Consensus 335 Vm-PVKqWLEErRflQGEmqrLrdKLAiaERtAk 367 (618)
|| ---.-.++.--++-++..|+.++.++++..+
T Consensus 143 ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 143 LLRDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 301
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.95 E-value=3.1e+02 Score=24.61 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh-HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Q 007087 211 AALLEAERTVQVALAKASMV-DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQT 271 (618)
Q Consensus 211 aALleaeR~v~~AlakA~~V-~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqT 271 (618)
..++-.=|..|-++++=+=| +-|...+..|+.++...+.+++-|.+.......|+.+|..+
T Consensus 55 p~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 55 PNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667778888887666 44777788888888888888877777777666677666554
No 302
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=30.71 E-value=3.7e+02 Score=23.54 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=46.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007087 200 KALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV 279 (618)
Q Consensus 200 kALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEav 279 (618)
-++-||+|-+..---|++ ...++.....+=.+.-.++++|.++++|--..|-.+++ +|...+.+|++.|
T Consensus 7 ~~vkRL~KE~~~Y~kE~~----~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~-------RL~~a~~~L~~~l 75 (90)
T PF02970_consen 7 GVVKRLLKEEASYEKEVE----EQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQ-------RLEKAVEDLEEFL 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHH
Confidence 356677766655544443 22222222222245678999999999999998887764 5777888888775
Q ss_pred Hhc
Q 007087 280 LAG 282 (618)
Q Consensus 280 LAg 282 (618)
-.+
T Consensus 76 ~~~ 78 (90)
T PF02970_consen 76 EEE 78 (90)
T ss_dssp HHH
T ss_pred HHC
Confidence 544
No 303
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=30.67 E-value=3e+02 Score=22.50 Aligned_cols=82 Identities=29% Similarity=0.445 Sum_probs=47.4
Q ss_pred CCCCCCChhHHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 007087 52 RPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLI 131 (618)
Q Consensus 52 r~~~~~~~~~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~ll 131 (618)
.|+||++.-|-.+|+..+ .-++.++++.|+ .+......|++.+ +.-.=+-+=..++++..+..-+....++|
T Consensus 3 ~~~fd~~~~~~~~l~~~s--~~~i~~~~~~L~---~~i~~~~~eLr~~---V~~nY~~fI~as~~I~~m~~~~~~l~~~l 74 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSS--IKEIRQLENKLR---QEIEEKDEELRKL---VYENYRDFIEASDEISSMENDLSELRNLL 74 (87)
T ss_pred CCcCCHHHHHHHHHhhCC--HHHHHHHHHHHH---HHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999944444544444 356666666665 4455555555443 33344445556666666666666666666
Q ss_pred hhhhhhhhhh
Q 007087 132 ETKNLEIKKI 141 (618)
Q Consensus 132 e~knLEiKkl 141 (618)
...+-.+..+
T Consensus 75 ~~l~~~~~~l 84 (87)
T PF08700_consen 75 SELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHh
Confidence 6655555544
No 304
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.64 E-value=3.2e+02 Score=22.78 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhh
Q 007087 105 LREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKIND 143 (618)
Q Consensus 105 ~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklnd 143 (618)
.++.++..|......++..+..++..++...-+++.+..
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888888777766666544
No 305
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.33 E-value=9.9e+02 Score=28.40 Aligned_cols=126 Identities=27% Similarity=0.398 Sum_probs=79.5
Q ss_pred hhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHH
Q 007087 134 KNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAAL 213 (618)
Q Consensus 134 knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaAL 213 (618)
.++.+|-|-.-|++.+ .|||-|-.+-|----+.+...=.-.|.|-.|.-.-..||....|+|. -++|-
T Consensus 606 ~ilklksllstkreqi-------~tlrtvlkankqtaevaltnlksKYEnEK~mvtetm~KlRnELk~Lk-----edaat 673 (772)
T KOG0999|consen 606 QILKLKSLLSTKREQI-------TTLRTVLKANKQTAEVALTNLKSKYENEKAMVTETMDKLRNELKALK-----EDAAT 673 (772)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 3667777777777544 57888776666432222322333345555555555556666555553 24555
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007087 214 LEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 214 leaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELE 276 (618)
+..-|++= |.-|++.--+..||.+|+.-+.+|.|.|..+-|.-|.--=-|||-+.+||
T Consensus 674 fsslramf-----~~R~ee~~tq~de~~~ql~aaedekKtln~llrmaiqqklaltqrle~~e 731 (772)
T KOG0999|consen 674 FSSLRAMF-----AARCEEYVTQLDELQRQLAAAEDEKKTLNQLLRMAIQQKLALTQRLEELE 731 (772)
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555542 34467777788888889999999999998888876665555677666654
No 306
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.07 E-value=5.5e+02 Score=25.38 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=30.2
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007087 233 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVL 280 (618)
Q Consensus 233 lQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavL 280 (618)
+.....+|..-|...|++...++.+..-+..||.+|...+..+.+.|.
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666666777777777777776654
No 307
>PRK04406 hypothetical protein; Provisional
Probab=29.98 E-value=3.5e+02 Score=23.25 Aligned_cols=49 Identities=27% Similarity=0.301 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHH
Q 007087 107 EKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE 156 (618)
Q Consensus 107 dKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAE 156 (618)
+|.+..+.+-+..|+.|+...|..++..|-.|-.-.-+= +.|.+|+...
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I-~~L~~ql~~L 51 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLI-TKMQDQMKYV 51 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456667888888999999999999998887776655332 2444444433
No 308
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=29.56 E-value=3.3e+02 Score=29.50 Aligned_cols=69 Identities=28% Similarity=0.303 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 007087 217 ERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAV 289 (618)
Q Consensus 217 eR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAV 289 (618)
|..+..+..+|.-|..|.-++-.++.+||..-++-++=+.|- -+.|||+|-. .++|+++...-...|++
T Consensus 111 ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~--~~~e~E~lk~--~e~e~~~~~~~~~~~~~ 179 (319)
T KOG0796|consen 111 EERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQK--AMKEVEELKA--KEKEEAEESYNTTMPGA 179 (319)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH--HHHHHHHHHH--HHHHHHHHHHccCcchh
Confidence 356667777788888888888889999998888777765443 2456777766 67777777664444443
No 309
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=29.54 E-value=5.3e+02 Score=29.50 Aligned_cols=86 Identities=33% Similarity=0.415 Sum_probs=57.1
Q ss_pred HhhhccHHHHHHHHHH----HHHhhhchHHHHHHHhhHHHH----------HHHHHHHHHHHHHHhhhhHHhhhhhHHHH
Q 007087 176 AILAPLEAELKLARQE----IAKLQDDNKALDRLTKSKEAA----------LLEAERTVQVALAKASMVDDLQNKNQELM 241 (618)
Q Consensus 176 aiiApLeAelk~~r~E----i~kLqddnkALerltKsKEaA----------LleaeR~v~~AlakA~~V~dlQNkN~EL~ 241 (618)
..|..|-|||-..|.| -.-|.+.|+.|...++----| |-+||-.+..|-.+|..+ +..|..|.
T Consensus 385 rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~---eqe~ek~~ 461 (488)
T PF06548_consen 385 RFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDA---EQENEKAK 461 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3566777777777764 445788888888777754433 456666667777777654 55788888
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 007087 242 KQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 242 kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E 274 (618)
+||| |+.|--..||.-|.|-+.|
T Consensus 462 kqie----------kLK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 462 KQIE----------KLKRKHKMEISTMKQYLAE 484 (488)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHhh
Confidence 8886 4445555566666665554
No 310
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.37 E-value=2.5e+02 Score=30.38 Aligned_cols=27 Identities=44% Similarity=0.425 Sum_probs=13.7
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHH
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKA 98 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIka 98 (618)
+.+|-.|.++.|....++...++|.+.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~ 53 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNA 53 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 311
>PRK12704 phosphodiesterase; Provisional
Probab=29.28 E-value=8.6e+02 Score=27.36 Aligned_cols=66 Identities=21% Similarity=0.400 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHh------chhhHHHHHHHHHHHHH
Q 007087 233 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQ-TVRELEEAVLA------GGAAANAVRDYQRKVQE 298 (618)
Q Consensus 233 lQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsq-Tv~ELEEavLA------ggAaANAVRdyqrq~~e 298 (618)
|..+..+|.++.+.+++-.+-+++++.+.+.+.++.+. |..|..+-++. .-.++.-||.|+....+
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKE 184 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555455555555555555554433 11222222222 13455567776655543
No 312
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.08 E-value=92 Score=33.09 Aligned_cols=53 Identities=28% Similarity=0.525 Sum_probs=38.4
Q ss_pred HHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 007087 191 EIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAE 264 (618)
Q Consensus 191 Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaE 264 (618)
-|++|.|.+..|+-++-.|+.-|++-...|- +|+-- +|.++.||+.|+-+|.-
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqis-----------------nLKad----~e~~~~~ek~Hke~v~q 278 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQIS-----------------NLKAD----KEYQKELEKKHKERVQQ 278 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhh-----------------ccCcc----hhHHHHHHHHHHHHHHH
Confidence 4788999999999999999998887764432 22211 45557888999876643
No 313
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=5.1e+02 Score=24.63 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccC-CCCChhHHhhhccHHHHH
Q 007087 108 KAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKD-DDMPPIEAILAPLEAELK 186 (618)
Q Consensus 108 KAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKD-ddmppieaiiApLeAelk 186 (618)
||+-+|....-.-..+++..+-+.+.+|--.|.+.--+|.-+- -.+.+ .|+.+--- ==.-|..++..-|++++|
T Consensus 3 kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~---~~de~--~~Y~svgrmF~l~dk~a~~s~leak~k 77 (114)
T KOG3501|consen 3 KAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELED---VGDEK--AVYTSVGRMFMLSDKAAVRSHLEAKMK 77 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHH--HHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4555555555555556666665555555444433333332211 00000 00000000 012577889999999999
Q ss_pred HHHHHHHHhhhchHHHHHHHh
Q 007087 187 LARQEIAKLQDDNKALDRLTK 207 (618)
Q Consensus 187 ~~r~Ei~kLqddnkALerltK 207 (618)
..+..|+.||..+-=||+-..
T Consensus 78 ~see~IeaLqkkK~YlEk~v~ 98 (114)
T KOG3501|consen 78 SSEEKIEALQKKKTYLEKTVS 98 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877776544
No 314
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.99 E-value=6.4e+02 Score=25.73 Aligned_cols=135 Identities=23% Similarity=0.266 Sum_probs=76.3
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhh---HHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh
Q 007087 175 EAILAPLEAELKLARQEIAKLQDDNKALDRLTKS---KEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN 251 (618)
Q Consensus 175 eaiiApLeAelk~~r~Ei~kLqddnkALerltKs---KEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEn 251 (618)
-+.|+-|+.-=+....|..+||...-.+|-.... .=..|.---+.++-|+.+|..|++ .+-+|+--.-...|+|
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~e---EledLk~~~~~lEE~~ 83 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEE---ELEDLKTLAKSLEEEN 83 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3445556655555556666666665555543221 111222223456778888888755 3334444444455666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 252 KILDKMHRQKVAEVEKLTQTVRELEEA---VLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 252 kiLdk~hRQKvaEVEKLsqTv~ELEEa---vLAggAaANAVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
+=|-.=.||--.|.-.|...|+.|.|- +++. .-.-+.+..+|..++.+|-+.|--..-..|
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e------~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~ 147 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETLQEENGKLLAE------RDGLKKRSKELATEKATLQRQLCEFESLIC 147 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh------hhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 655555566555666666666665442 1111 234578889999999999999844433333
No 315
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=28.09 E-value=4.4e+02 Score=23.56 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=41.1
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007087 228 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELE 276 (618)
+.+..++..+.++.++|.-.+.++.-+-..++.++.|+..|+.....-.
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~ 51 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQR 51 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4567888999999999999999999999999999999988877665533
No 316
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.09 E-value=2.6e+02 Score=22.82 Aligned_cols=50 Identities=28% Similarity=0.467 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------hchhhHHH----HHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 263 AEVEKLTQTVRELEEAVL-------AGGAAANA----VRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 263 aEVEKLsqTv~ELEEavL-------AggAaANA----VRdyqrq~~eLneEk~tLerELAR 312 (618)
+|+++|+..+..++.-|. ..|-..+| |...+.+..++..+...|...|+.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555554443 33544444 888899999999999999887764
No 317
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=28.08 E-value=7.9e+02 Score=26.54 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=92.5
Q ss_pred chhHhhhhhhHHHhhhhHHHHHHHHH-HHHHHhh------HHHHHHHHHHHH-------HHHHHHHHHHHHhHHHhhhhh
Q 007087 70 PVKVELNRLENEVRDKDRELGEAQAE-IKALRLS------ERLREKAVEELT-------EELSKVEEKLKLAENLIETKN 135 (618)
Q Consensus 70 Pv~~ElnRLeN~lr~KdrEL~~A~aE-IkaLr~s------e~~kdKAveel~-------~el~kldEKLk~tE~lle~kn 135 (618)
|+--++..||+++-+-=.-|-.=+-- .+|++.+ ..-++--++=|. +=+..+.+.+..+++..++-+
T Consensus 196 ~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~ 275 (412)
T PF04108_consen 196 TILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTK 275 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667776554433333221111 3455633 222333333333 334444555555555544422
Q ss_pred hhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHH----HHHHhhHHH
Q 007087 136 LEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKAL----DRLTKSKEA 211 (618)
Q Consensus 136 LEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkAL----erltKsKEa 211 (618)
.=|... .........+....+..++..+. .+|-.-+++.-++..+...+..|..-.++...| +.+..+=..
T Consensus 276 k~l~~~---~~~~~~~~~~~~~~~~~l~~~~~--~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~ 350 (412)
T PF04108_consen 276 KLLQSQ---RDHIRELYNALSEALEELRKFGE--RLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDS 350 (412)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223322 23233444445555666666666 688888899999998888888777777777777 444556666
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhhhHH
Q 007087 212 ALLEAERTVQVALAKASMVDDLQNKNQE 239 (618)
Q Consensus 212 ALleaeR~v~~AlakA~~V~dlQNkN~E 239 (618)
-|+|+.|.-........++.+++++...
T Consensus 351 LL~Ev~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 351 LLLEVERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778877776655555555555544433
No 318
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.00 E-value=4.1e+02 Score=23.19 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007087 83 RDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKL 126 (618)
Q Consensus 83 r~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~ 126 (618)
-++-||+...+..|..-|.--.-+...+.+=..+|.+-+..|..
T Consensus 3 i~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~ 46 (126)
T PF13863_consen 3 IEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEE 46 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777766666655555555555555555555444443
No 319
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.93 E-value=1.2e+02 Score=27.10 Aligned_cols=62 Identities=31% Similarity=0.434 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhHHHhhhhh--hhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHH
Q 007087 115 EELSKVEEKLKLAENLIETKN--LEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEI 192 (618)
Q Consensus 115 ~el~kldEKLk~tE~lle~kn--LEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei 192 (618)
.|+..++||+.....-|+..+ |.-..|.+|.|..|. +++--|-..+-+.|.+|+.-|+|.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE------------------~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE------------------KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH------------------HHHHHHHHHhhccHHHHHHHHHhh
Confidence 456666677766666666443 444567788887776 334456677888888888888876
Q ss_pred HH
Q 007087 193 AK 194 (618)
Q Consensus 193 ~k 194 (618)
.|
T Consensus 67 rK 68 (85)
T PF15188_consen 67 RK 68 (85)
T ss_pred hh
Confidence 54
No 320
>PLN02678 seryl-tRNA synthetase
Probab=27.92 E-value=2.3e+02 Score=31.40 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=35.2
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHhHHHhh
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKALRLSERLR---EKAVEELTEELSKVEEKLKLAENLIE 132 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~k---dKAveel~~el~kldEKLk~tE~lle 132 (618)
+..+|..|.++.|.-..++...++|+..+--....+ ....+++..+++.+.++++.+|..+.
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~ 95 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQ 95 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788887777777777777766554333220 01234455555555555554444443
No 321
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=27.77 E-value=1.6e+02 Score=34.43 Aligned_cols=47 Identities=32% Similarity=0.382 Sum_probs=37.6
Q ss_pred hhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007087 76 NRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEE 122 (618)
Q Consensus 76 nRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldE 122 (618)
..|+..|..||.||.+-+..+..|..+--..+-++.+|++||.|+.-
T Consensus 27 ~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 27 PQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 46788888899888888888888888877778888888887776544
No 322
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.54 E-value=5.3e+02 Score=24.39 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=58.8
Q ss_pred hhHhhhhhhHHHhhhhHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhh
Q 007087 71 VKVELNRLENEVRDKDRELGEA---------QAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKI 141 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A---------~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKkl 141 (618)
|.+...-++.+|++-+.-|.+. |.-|+.|=+-. .|++++.+|.+.+.-++-+++..++.-+...-++++|
T Consensus 25 ~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 25 VILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666776655555432 44555554544 7999999999999999999999999999999999988
Q ss_pred hhHHHHhHHH
Q 007087 142 NDEKRASMAA 151 (618)
Q Consensus 142 ndEKK~alAA 151 (618)
..+=.+++..
T Consensus 104 q~~i~~~l~~ 113 (119)
T COG1382 104 QSEIQKALGD 113 (119)
T ss_pred HHHHHHHhhc
Confidence 8776655543
No 323
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=27.16 E-value=6.6e+02 Score=25.34 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 110 VEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 110 veel~~el~kldEKLk~tE~lle~ 133 (618)
+.....++......+.-.+.|+.+
T Consensus 116 l~~ak~~l~~a~~~~~r~~~L~~~ 139 (331)
T PRK03598 116 VKQAQAAYDYAQNFYNRQQGLWKS 139 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344444555555555555555443
No 324
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=26.97 E-value=41 Score=29.30 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHH
Q 007087 209 KEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEICQ 248 (618)
Q Consensus 209 KEaALleaeR~v~~AlakA~-~V~dlQNkN~EL~kQiEIcq 248 (618)
+..|..+|+.++..|-..|. ||.+-..+...|..+++...
T Consensus 80 ~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk 120 (131)
T PF05103_consen 80 KAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEIEELK 120 (131)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666554 34555545444444444433
No 325
>KOG2895 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.54 E-value=33 Score=37.24 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=29.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhh
Q 007087 253 ILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAA 285 (618)
Q Consensus 253 iLdk~hRQKvaEVEKLsqTv~ELEEavLAggAa 285 (618)
.+|.|-|+=..|+|+|.|.+++.||+|+...|.
T Consensus 363 yidv~grr~~~e~e~l~q~lqp~~~~~~s~~av 395 (408)
T KOG2895|consen 363 YIDVMGRRVIQEEEKLKQELQPIEEQILSHEAV 395 (408)
T ss_pred ehhhhhHHHHHHHHHHHHhcCCChhhhcchhhc
Confidence 478999999999999999999999999977654
No 326
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=26.53 E-value=5.3e+02 Score=24.02 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=50.7
Q ss_pred hhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 007087 195 LQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 195 LqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E 274 (618)
|.-.+|.++||++-+ ..--.|+++.++++.--..|-.+.+ --..+.++..|-|.=+--|=-|++-.+..
T Consensus 2 lK~riRdieRLL~r~-----~Lp~~vR~~~Er~L~~L~~~l~~~~------~~~~~kk~~~kYh~VRFfERkKa~R~lkq 70 (114)
T PF10153_consen 2 LKKRIRDIERLLKRK-----DLPADVRVEKERELEALKRELEEAE------RKEKEKKMAKKYHMVRFFERKKATRKLKQ 70 (114)
T ss_pred HHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999766 2333477777766543222222211 12356678888888888888899888888
Q ss_pred HHHHHHhch
Q 007087 275 LEEAVLAGG 283 (618)
Q Consensus 275 LEEavLAgg 283 (618)
|+-.+..+.
T Consensus 71 l~k~l~~~~ 79 (114)
T PF10153_consen 71 LEKKLEEAE 79 (114)
T ss_pred HHHHHHhcc
Confidence 877776543
No 327
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.44 E-value=1.6e+02 Score=23.36 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=11.0
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKAL 99 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaL 99 (618)
+++.|++++.....+...-+.||+.|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444
No 328
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=26.36 E-value=1.6e+02 Score=33.35 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=44.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhh
Q 007087 200 KALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK-ILDKMHRQ 260 (618)
Q Consensus 200 kALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQ 260 (618)
|-.-|.+|+|+.|-..=.+.=..-...+.-|..---+|+||.||++....+|. +|..++..
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 44457788888886655555555566667777778899999999999988888 66555544
No 329
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=26.29 E-value=2e+02 Score=30.95 Aligned_cols=99 Identities=28% Similarity=0.455 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHH-HhhHHHHHhhhhhhhhhhhhhhhccc------ccCCCC-ccchhhHHHHhhhhHHHHHHHHHH
Q 007087 287 NAVRDYQRKVQEMNEE-RKTLDRELARAKVTANRVATVVANEW------KDANDK-VMPVKQWLEERRFLQGEMQQLRDR 358 (618)
Q Consensus 287 NAVRdyqrq~~eLneE-k~tLerELARaKv~ANRVA~vvAnEW------KD~ndk-VmPVKqWLEErRflQGEmqrLrdK 358 (618)
.-+++|+.+++-|-.+ +.+.+ +....-++=-+-..+| .|..|+ -+-.+-.+++.-+++=||+-|+|+
T Consensus 163 ~wm~~~~~~i~nll~~f~~ipe-----~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~ 237 (307)
T PF15112_consen 163 QWMRDFQMKIQNLLNEFRNIPE-----IVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEK 237 (307)
T ss_pred HHHHHHHHHHHHHHHHhccChH-----HHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHH
Confidence 4588999998877652 22222 2333333333334455 344555 345567789999999999999999
Q ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHhhcCC
Q 007087 359 LAITERTAKSEAQLKEKYHLRLKVLEESLRGS 390 (618)
Q Consensus 359 LAiaERtAkaEaQLKeK~klRLk~lEe~Lk~~ 390 (618)
|.-.=+++.-..-+.|.--.+|+++-+-|+..
T Consensus 238 lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~N 269 (307)
T PF15112_consen 238 LQELYLQAEEQEVLPEEDSKRLEVLKEFLRNN 269 (307)
T ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHhc
Confidence 98776666655555666666777777766643
No 330
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.25 E-value=6.3e+02 Score=28.56 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=31.7
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHHHHHhhcc
Q 007087 542 IEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVE 580 (618)
Q Consensus 542 IeML~KKVdtLtKamEVEaKKmrREvaa~EKEvaa~r~~ 580 (618)
++...++++....-++++.|.|-|....||++|......
T Consensus 365 ~~~~~~~~~~~~~dl~k~~k~~~~~~kk~Ek~i~k~~e~ 403 (438)
T COG4487 365 VEAIDEKLENTQLDLEKEKKAIIRAWKKREKEIEKLIES 403 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567788888888999999999999999999877654
No 331
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.08 E-value=3.5e+02 Score=29.22 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=14.5
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHH
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKA 98 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIka 98 (618)
+.+|..|.++.|+...++...++|...
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~ 55 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNE 55 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 332
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=25.80 E-value=8.5e+02 Score=26.13 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhh
Q 007087 376 YHLRLKVLEESL 387 (618)
Q Consensus 376 ~klRLk~lEe~L 387 (618)
.+.+|...+..|
T Consensus 303 ~~~~l~~a~~~l 314 (457)
T TIGR01000 303 LESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 333
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.70 E-value=9.2e+02 Score=26.53 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=13.2
Q ss_pred hcCCCchhHhhhhhhHHHh
Q 007087 65 LHGSDPVKVELNRLENEVR 83 (618)
Q Consensus 65 ~hgsdPv~~ElnRLeN~lr 83 (618)
+...+|..-+|..+-|.+.
T Consensus 218 ~~~~~~~~~el~~~~~~l~ 236 (582)
T PF09731_consen 218 LVEEEPEVQELVSIFNDLI 236 (582)
T ss_pred hhhhhhhHHHHHHhccchh
Confidence 3567888877777777663
No 334
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=25.61 E-value=3.8e+02 Score=28.07 Aligned_cols=65 Identities=26% Similarity=0.275 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH--HHHHhHHHHHHhhh
Q 007087 183 AELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI--CQEENKILDKMHRQ 260 (618)
Q Consensus 183 Aelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI--cqEEnkiLdk~hRQ 260 (618)
.+-.+++.++..|.+++++|++.+-.-++.+..++ .+++..+ +|+. ..||+.+|-+.|||
T Consensus 185 ~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e--~r~~E~r----------------~ieEkk~~eei~fLk~tN~q 246 (259)
T KOG4001|consen 185 NEKTRATTEWKVLEDKKKELELKIAQLKKKLETDE--IRSEEER----------------EIEEKKMKEEIEFLKETNRQ 246 (259)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hhhHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999998776666665555 3333333 2332 45777888888888
Q ss_pred HHHHH
Q 007087 261 KVAEV 265 (618)
Q Consensus 261 KvaEV 265 (618)
=-+-+
T Consensus 247 LKaQL 251 (259)
T KOG4001|consen 247 LKAQL 251 (259)
T ss_pred HHHHH
Confidence 44433
No 335
>PRK10869 recombination and repair protein; Provisional
Probab=25.48 E-value=9.9e+02 Score=26.83 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=29.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 82 VRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 82 lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
++..-.++..+..++..|+..+..+.+-++-|+-++..+++ +..-.+..+....++++|.+--+
T Consensus 159 ~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~-~~l~~gE~eeL~~e~~~L~n~e~ 222 (553)
T PRK10869 159 MRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE-FAPQPGEFEQIDEEYKRLANSGQ 222 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-CCCCCCcHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555555555444444432 12223333334444555554444
No 336
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.47 E-value=3e+02 Score=31.21 Aligned_cols=27 Identities=44% Similarity=0.546 Sum_probs=22.9
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHH
Q 007087 177 ILAPLEAELKLARQEIAKLQDDNKALD 203 (618)
Q Consensus 177 iiApLeAelk~~r~Ei~kLqddnkALe 203 (618)
-|+-|=+.+|..|.+++.|..+|+.|-
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~ 86 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALK 86 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777899999999999999998874
No 337
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=25.39 E-value=6.9e+02 Score=24.96 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
+...+.++..+..........|.++.++|-
T Consensus 181 ~~~~~~~~~~~~~~l~~a~~~l~~~~i~AP 210 (327)
T TIGR02971 181 VDLAQAEVKSALEAVQQAEALLELTYVKAP 210 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEECC
Confidence 444556666666666777777777766654
No 338
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.37 E-value=1.1e+03 Score=27.19 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=37.8
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh
Q 007087 172 PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN 251 (618)
Q Consensus 172 ppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEn 251 (618)
.-+...++-|++++...+.++..+. .++..+.+.+|.++.. -.+.+.|-++-+|+.=+...-.-..
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~~p-----------~~e~~~~~L~R~~~~~---~~lY~~lL~r~~e~~i~~a~~~~~~ 407 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSAMP-----------STQQEVLRLSRDVEAG---RAVYLQLLNRQQELSISKSSAIGNV 407 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCce
Confidence 3344455556665555555554443 3455666666655543 4566777777777633322212244
Q ss_pred HHHHHH
Q 007087 252 KILDKM 257 (618)
Q Consensus 252 kiLdk~ 257 (618)
+|+|.-
T Consensus 408 rIid~A 413 (726)
T PRK09841 408 RIIDPA 413 (726)
T ss_pred eeccCC
Confidence 566644
No 339
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=25.28 E-value=99 Score=28.53 Aligned_cols=29 Identities=48% Similarity=0.571 Sum_probs=23.4
Q ss_pred HHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007087 189 RQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAK 226 (618)
Q Consensus 189 r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Alak 226 (618)
+.||++||+..|.++. -+|||+-+.|+.-
T Consensus 9 ~~eI~kLqe~lk~~e~---------keAERigRiAlKA 37 (98)
T PRK13848 9 REEIAKLQEQLKQAET---------REAERIGRIALKA 37 (98)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 5689999998877664 6899999998853
No 340
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.06 E-value=1.2e+03 Score=27.56 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=19.1
Q ss_pred hhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 007087 196 QDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKN 237 (618)
Q Consensus 196 qddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN 237 (618)
.++..-+++|+..=+....+.+...+.+...-.-++.+.++.
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444444444433333333333333
No 341
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=24.93 E-value=3e+02 Score=24.02 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007087 263 AEVEKLTQTVRELEEAV 279 (618)
Q Consensus 263 aEVEKLsqTv~ELEEav 279 (618)
.||.-|-.+|..||.-|
T Consensus 61 ~EIA~lE~eV~~LE~~v 77 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKV 77 (88)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 342
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=24.86 E-value=2.4e+02 Score=27.01 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHH
Q 007087 102 SERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQ 152 (618)
Q Consensus 102 se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQ 152 (618)
++..=..-|.+|..|-.-|+.-++-.|=-|++-..-..++|||+|..|+.=
T Consensus 52 s~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi 102 (129)
T PF15372_consen 52 SVESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQYLAEI 102 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444445566777777777888888888888888888999999999777643
No 343
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=24.85 E-value=1.1e+03 Score=26.95 Aligned_cols=105 Identities=21% Similarity=0.307 Sum_probs=61.7
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHH
Q 007087 174 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKI 253 (618)
Q Consensus 174 ieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnki 253 (618)
++..|+-..-+|...+.+|+..+..|+.|+..+.++..-+.+.+..|. +++|=.+--..
T Consensus 49 le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~---------------------~l~i~~~~l~~ 107 (701)
T PF09763_consen 49 LESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLD---------------------TLSIPEEHLEA 107 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH---------------------hcCCCHHHHHH
Confidence 566666677777888888888888888888888888776666555444 33333333333
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHh----------chhhHHHHHHHHHHHHHH
Q 007087 254 LDKMHRQKVAEVEKLTQTVRELEEAVLA----------GGAAANAVRDYQRKVQEM 299 (618)
Q Consensus 254 Ldk~hRQKvaEVEKLsqTv~ELEEavLA----------ggAaANAVRdyqrq~~eL 299 (618)
|..-.=....-|+++..-+..|-.|+.+ +..-..||++++..+..+
T Consensus 108 L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~ 163 (701)
T PF09763_consen 108 LRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKV 163 (701)
T ss_pred HhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHH
Confidence 3221111111245555556666667766 223556777666555443
No 344
>PRK11519 tyrosine kinase; Provisional
Probab=24.77 E-value=1.1e+03 Score=27.09 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 107 EKAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 107 dKAveel~~el~kldEKLk~tE~lle~ 133 (618)
.++++-|.++|..+..+|...|..|++
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777776664
No 345
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.53 E-value=1.6e+03 Score=28.86 Aligned_cols=86 Identities=33% Similarity=0.424 Sum_probs=57.0
Q ss_pred HhhhccHHHHHHHHHH----HHHhhhchHHHHHHHhhHHHH----------HHHHHHHHHHHHHHhhhhHHhhhhhHHHH
Q 007087 176 AILAPLEAELKLARQE----IAKLQDDNKALDRLTKSKEAA----------LLEAERTVQVALAKASMVDDLQNKNQELM 241 (618)
Q Consensus 176 aiiApLeAelk~~r~E----i~kLqddnkALerltKsKEaA----------LleaeR~v~~AlakA~~V~dlQNkN~EL~ 241 (618)
..|..|-|||-..|-| -.-|.|.||.|--.++----| |-|||-.+..|-.+|..+ +..|.+|.
T Consensus 1155 ~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~---eqe~~~~~ 1231 (1320)
T PLN03188 1155 KFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDA---EQEAAEAY 1231 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4677788888777765 455788899888877765444 345555566666666543 44666676
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 007087 242 KQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 242 kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E 274 (618)
|||| |+.|--..||.-|.|-++|
T Consensus 1232 k~~~----------klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1232 KQID----------KLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHhh
Confidence 6664 5666666788877776655
No 346
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.48 E-value=72 Score=25.20 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=17.7
Q ss_pred HHHHHHHhHHHHHhHHHHHHhh
Q 007087 557 EVEAKKMRREVAAMEKEVAAMR 578 (618)
Q Consensus 557 EVEaKKmrREvaa~EKEvaa~r 578 (618)
-.+.++.+++++.+|+|++..|
T Consensus 47 r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4677888889999999887654
No 347
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.40 E-value=3.5e+02 Score=21.19 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 207 KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 207 KsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
++.+||--.=++.-+.....-..|.+|+..|..|..+|...+.
T Consensus 11 rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 11 RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666655555555555555666666666666666555443
No 348
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.33 E-value=1.1e+02 Score=27.13 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=23.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMH 258 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~h 258 (618)
...+++.|.+|.+++...+.|+.||.|..
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888899999999999999986654
No 349
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.87 E-value=6.8e+02 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 007087 108 KAVEELTEELSKVEEKLKLAENLIETK 134 (618)
Q Consensus 108 KAveel~~el~kldEKLk~tE~lle~k 134 (618)
+-+.+-..+|..++.+|..-|..|+++
T Consensus 71 ~E~~~~~~el~~~E~rl~~rE~~L~~~ 97 (201)
T PF12072_consen 71 RELKERRKELQRLEKRLQQREEQLDRR 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555543
No 350
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.68 E-value=9.5e+02 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=17.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHHhHHh
Q 007087 337 PVKQWLEERRFLQGEMQQLRDRLAITERT 365 (618)
Q Consensus 337 PVKqWLEErRflQGEmqrLrdKLAiaERt 365 (618)
||-+--.--.=|..||.++-=+|.+.+-+
T Consensus 329 Plv~IKqAl~kLk~EI~qMdvrIGVleh~ 357 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEIKQMDVRIGVLEHT 357 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 44333333344788888888887776644
No 351
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=23.65 E-value=1.5e+03 Score=28.17 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=61.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 007087 231 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVREL-EEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRE 309 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~EL-EEavLAggAaANAVRdyqrq~~eLneEk~tLerE 309 (618)
+|+.++|-+|-.|+|..+.+.-.++.+++-.--=++.|.++..-| .|.-..-+...|-..-|-.+.+++....+.-+++
T Consensus 462 ~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 399999999999999999988888777777666667776666553 3333334556777888888888888888888888
Q ss_pred Hhh
Q 007087 310 LAR 312 (618)
Q Consensus 310 LAR 312 (618)
++-
T Consensus 542 ~~~ 544 (980)
T KOG0980|consen 542 AAE 544 (980)
T ss_pred HHH
Confidence 743
No 352
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.20 E-value=4.1e+02 Score=21.59 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----hchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 263 AEVEKLTQTVRELEEAVL-----AGGAAANAVRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 263 aEVEKLsqTv~ELEEavL-----AggAaANAVRdyqrq~~eLneEk~tLerELAR 312 (618)
.-|.++...+.|.++.|- +.++.++.-..|+.++.....+...|.++|.+
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444444444432 34455566677788888888888888887753
No 353
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.19 E-value=1.2e+02 Score=25.53 Aligned_cols=32 Identities=34% Similarity=0.312 Sum_probs=21.7
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHHH
Q 007087 175 EAILAPLEAELKLARQEIAKLQDDNKALDRLT 206 (618)
Q Consensus 175 eaiiApLeAelk~~r~Ei~kLqddnkALerlt 206 (618)
+.-|+-|++||.-.+.+|.+-+-...|-+.|.
T Consensus 27 ~~RIa~L~aEI~R~~~~~~~K~a~r~AAealF 58 (59)
T PF06698_consen 27 EERIALLEAEIARLEAAIAKKSASRAAAEALF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677778877777777777666666655554
No 354
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.71 E-value=1.4e+03 Score=27.62 Aligned_cols=167 Identities=23% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh-HHHhhhhh----hhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHH
Q 007087 112 ELTEELSKVEEKLKLA-ENLIETKN----LEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELK 186 (618)
Q Consensus 112 el~~el~kldEKLk~t-E~lle~kn----LEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk 186 (618)
+|..+|.+|.+.+.-+ ++.=.-++ --|+||.+|=-.-+.+-+.+.- |+.-|-
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~g-----------------------Lk~kL~ 489 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMG-----------------------LQERLE 489 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhh-----------------------HHHHHH
Q ss_pred HHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH--------------HHHHhH
Q 007087 187 LARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI--------------CQEENK 252 (618)
Q Consensus 187 ~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEI--------------cqEEnk 252 (618)
+.|.|+.|..-++.-+...++-| +.....-+.-=+..|-=--+|+++..-|+-.. . -||=||
T Consensus 490 ~Lr~E~sKa~~~~~~~~~~L~eK---~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s~g~~~a~~Lk~ei~k 565 (762)
T PLN03229 490 NLREEFSKANSQDQLMHPVLMEK---IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALSEKKSKAEKLKAEINK 565 (762)
T ss_pred HHHHHHHhcccccccccHHHHHH---HHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-HhhhhcccchhhhhhhHHHHH
Q ss_pred -HHHHHhhhH---------------------------HHHHHHHHHHHH-HHHHHHHhchhhHH-------------HHH
Q 007087 253 -ILDKMHRQK---------------------------VAEVEKLTQTVR-ELEEAVLAGGAAAN-------------AVR 290 (618)
Q Consensus 253 -iLdk~hRQK---------------------------vaEVEKLsqTv~-ELEEavLAggAaAN-------------AVR 290 (618)
|.+-|.|-. ..+|+++-.+|. |+|++|-..|--.- .--
T Consensus 566 ki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~ 645 (762)
T PLN03229 566 KFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPP 645 (762)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCCh
Q ss_pred HHHHHHHHHHHHHhh
Q 007087 291 DYQRKVQEMNEERKT 305 (618)
Q Consensus 291 dyqrq~~eLneEk~t 305 (618)
+++.+|.+||+|.+.
T Consensus 646 ~~k~KIe~L~~eIkk 660 (762)
T PLN03229 646 NLQEKIESLNEEINK 660 (762)
T ss_pred hhHHHHHHHHHHHHH
No 355
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=22.16 E-value=5.7e+02 Score=22.83 Aligned_cols=101 Identities=20% Similarity=0.331 Sum_probs=43.1
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHH---------
Q 007087 178 LAPLEAELKLARQEIAKLQDDNKALDRLT-KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEIC--------- 247 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddnkALerlt-KsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIc--------- 247 (618)
+.-|+..++....+|.++....+ ..+. ..|+.|+.-+.+..+. -.....+....++...+.-+|+.+
T Consensus 10 ~~~L~~~~~~le~~i~~~~~~~k--~~~~~~~~~~A~~~lk~~k~~-~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~a 86 (171)
T PF03357_consen 10 IRRLEKQIKRLEKKIKKLEKKAK--KAIKKGNKERAKIYLKRKKRL-EKQLEKLLNQLSNLESVLLQIETAQSNQQVVKA 86 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHH--HHHCTT-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444432222 2121 1245555544433321 222223334444444444444443
Q ss_pred -HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Q 007087 248 -QEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGG 283 (618)
Q Consensus 248 -qEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAgg 283 (618)
..-+++|.+++.+ + -++++..++.++++.+.-.+
T Consensus 87 l~~~~~~Lk~~~~~-i-~~~~v~~~~d~~~e~~e~~~ 121 (171)
T PF03357_consen 87 LKQSSKALKKINKQ-I-NLDKVEKLMDDFQEEMEDQD 121 (171)
T ss_dssp ----SHHHHHHHHS-T-TSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-h-hhhhHHHHHHHHHHHHHHHH
Confidence 3445667766554 2 24455555555555554443
No 356
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.09 E-value=1.9e+02 Score=25.28 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhHHHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHHHHHhhc
Q 007087 514 YDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRV 579 (618)
Q Consensus 514 YD~LQKEVi~LRKa~~eKdqsLkdKddaIeML~KKVdtLtKamEVEaKKmrREvaa~EKEvaa~r~ 579 (618)
||.+..|+-+++..+.+=+..+..--.+|.|+-.+|-.|-.+ -.|||-. -|.|++.+|.
T Consensus 13 f~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~----h~kmK~~---YEeEI~rLr~ 71 (79)
T PF08581_consen 13 FENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA----HRKMKQQ---YEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHH
Confidence 777888888888888888888999999999999999887554 3455533 2555555553
No 357
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=21.85 E-value=8.2e+02 Score=24.55 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhh-hHHHHhHHHHHHHHHHHHH
Q 007087 107 EKAVEELTEELSKVEEKLKLAENLIETKNLEIKKIN-DEKRASMAAQFAAEATLRR 161 (618)
Q Consensus 107 dKAveel~~el~kldEKLk~tE~lle~knLEiKkln-dEKK~alAAQfAAEAtLRR 161 (618)
.+||..|..-+..|+.|-..+|..++...-..++.. .-|| .+|...|||
T Consensus 26 ~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk------~~Al~~Lkr 75 (191)
T PTZ00446 26 YKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQM------SNAKILLKR 75 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH------HHHHHHHHH
Confidence 578888888888888888888888877555444322 2222 135566776
No 358
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=21.74 E-value=4.6e+02 Score=25.59 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=45.5
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLI 131 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~ll 131 (618)
+...+.|.+..-+.++.+.++|+..|+.-..-|=-.+|.|++.+..+.+-|...=+-|
T Consensus 55 ~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~el~~l 112 (146)
T PF05852_consen 55 EECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEFELERL 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888889999999999999998777777788888888888887766544433
No 359
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=21.71 E-value=5.5e+02 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHh
Q 007087 234 QNKNQELMKQIEICQEENKILDKMH 258 (618)
Q Consensus 234 QNkN~EL~kQiEIcqEEnkiLdk~h 258 (618)
.++.+.+||.++..+-|++.|...+
T Consensus 44 dqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 44 DQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5778888888888888888875544
No 360
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.65 E-value=1.9e+02 Score=23.66 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=24.0
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEE 112 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAvee 112 (618)
.-++..++.++.....|-+.-+.||..|...++..+.|-++
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~ 70 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQ 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 34555556666666666666666666666666655555544
No 361
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.63 E-value=5.1e+02 Score=27.25 Aligned_cols=69 Identities=14% Similarity=0.319 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhh------------HHHHHHHHHHHHHHHHH
Q 007087 235 NKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAA------------ANAVRDYQRKVQEMNEE 302 (618)
Q Consensus 235 NkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAa------------ANAVRdyqrq~~eLneE 302 (618)
++.+++|+..+.-|..|.-.- .....||-+--=.|.+|++.|-..|.. ..++.++..++.+|.++
T Consensus 4 ~~~~~i~r~y~~~r~~~~~~~---~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 80 (329)
T PRK06835 4 GYISEILKEYEKRRDKEELEL---KNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVK 80 (329)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 456778888888777777442 334455655555666666655544311 33556666677777666
Q ss_pred HhhH
Q 007087 303 RKTL 306 (618)
Q Consensus 303 k~tL 306 (618)
+..|
T Consensus 81 ~~~l 84 (329)
T PRK06835 81 KAEL 84 (329)
T ss_pred HHHH
Confidence 6555
No 362
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.54 E-value=2.9e+02 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=12.1
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 007087 232 DLQNKNQELMKQIEICQEENKILDKMHR 259 (618)
Q Consensus 232 dlQNkN~EL~kQiEIcqEEnkiLdk~hR 259 (618)
+++.+|..|..+|+-.+..-..+|++.|
T Consensus 45 ~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 45 KLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 3444444444444444433234444444
No 363
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.36 E-value=5.9e+02 Score=22.72 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHH
Q 007087 185 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEE 250 (618)
Q Consensus 185 lk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEE 250 (618)
+-...+.|..|..+|++....++..+.++.+....++ .--.+|...|..++++..|-|..+++
T Consensus 20 l~~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~---~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 20 LWYQSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQ---QNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888888888888888887777555432221 11234555666666665555554443
No 364
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=1.3e+03 Score=27.88 Aligned_cols=88 Identities=23% Similarity=0.341 Sum_probs=61.0
Q ss_pred HHhhHHHH--HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccC----C---
Q 007087 99 LRLSERLR--EKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKD----D--- 169 (618)
Q Consensus 99 Lr~se~~k--dKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKD----d--- 169 (618)
.+..|.+. .+|+++|..++.-++.+-..||..+.++--+||+|-=-||.-.+ +--||-|+|-=--. .
T Consensus 68 ~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTt----SiT~L~~L~MLv~~vesL~~l~ 143 (793)
T KOG2180|consen 68 TRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTT----SITTLHRLHMLVTGVESLNALL 143 (793)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 37999999999999999999999999999999999999995443 34567777731000 0
Q ss_pred CCChhHHhhhccHHHHHHHHH
Q 007087 170 DMPPIEAILAPLEAELKLARQ 190 (618)
Q Consensus 170 dmppieaiiApLeAelk~~r~ 190 (618)
+---+-.+++||+|=+....+
T Consensus 144 ~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 144 SKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred hhccHHHHHhHHHHHHHHHHH
Confidence 001244567777776655543
No 365
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=21.32 E-value=8.7e+02 Score=24.63 Aligned_cols=38 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHH
Q 007087 181 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAER 218 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR 218 (618)
|++++.-+-.+|..|.+....-+.=+..-...|.+|..
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555544444444444444443
No 366
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.17 E-value=2.1e+02 Score=28.30 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHH
Q 007087 182 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQ 221 (618)
Q Consensus 182 eAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~ 221 (618)
|+|-...|.|+.|+.+.|..|-..+-+||+...+..|.+=
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 6777888999999999999999999999999999888763
No 367
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=21.16 E-value=8e+02 Score=24.16 Aligned_cols=91 Identities=16% Similarity=0.313 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 007087 288 AVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 367 (618)
Q Consensus 288 AVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAk 367 (618)
.+-+|..++..+..--..+--.++.++.-..-+-....+---+++....+-.+|+ |+.|..-|..++...+....
T Consensus 100 ~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~-----l~ae~~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 100 QLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWL-----LQAELAALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333333322222222222122225667778887 77888888888888888877
Q ss_pred hHHHHHHHHHHHHHHH
Q 007087 368 SEAQLKEKYHLRLKVL 383 (618)
Q Consensus 368 aEaQLKeK~klRLk~l 383 (618)
+...+-+=|++|...+
T Consensus 175 s~~~rq~L~~~qrdl~ 190 (240)
T PF12795_consen 175 SNNNRQELLQLQRDLL 190 (240)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 7777777776666554
No 368
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=21.07 E-value=1e+03 Score=25.23 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=15.8
Q ss_pred hhHHHHHhhhhhhhhhhhhh-----hhcccccCCCCcc
Q 007087 304 KTLDRELARAKVTANRVATV-----VANEWKDANDKVM 336 (618)
Q Consensus 304 ~tLerELARaKv~ANRVA~v-----vAnEWKD~ndkVm 336 (618)
..-+..|.++.+.|=-=.+| -.|+|=..+..+|
T Consensus 207 ~~a~~~L~~t~I~AP~dG~V~~~~v~~G~~V~~g~pl~ 244 (390)
T PRK15136 207 RNAWLALQRTKIVSPMTGYVSRRSVQVGAQISPTTPLM 244 (390)
T ss_pred HHHHHHHhCCEEECCCCeEEEEEecCCCCEeCCCCeEE
Confidence 33344566666655322222 2356655555554
No 369
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=20.94 E-value=3.5e+02 Score=26.20 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=21.0
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHH
Q 007087 171 MPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLT 206 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~kLqddnkALerlt 206 (618)
-|++...+.-+++++..++.++..++.+...+..|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~ 94 (322)
T TIGR01730 59 DDDYQLALQAALAQLAAAEAQLELAQRSFERAERLV 94 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666555544444443
No 370
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.83 E-value=5e+02 Score=21.63 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=22.6
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhh
Q 007087 172 PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKS 208 (618)
Q Consensus 172 ppieaiiApLeAelk~~r~Ei~kLqddnkALerltKs 208 (618)
-|.+.++.-|+.++.....+|.+|....+.++.-++.
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777776666666666666655555544433
No 371
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.71 E-value=5.7e+02 Score=22.28 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhH
Q 007087 103 ERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDE 144 (618)
Q Consensus 103 e~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndE 144 (618)
+..++.|+..|.+.+..++.+++.++..++....+++.+..+
T Consensus 58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 58 KQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999998888888888887777766544
No 372
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.69 E-value=4.8e+02 Score=23.89 Aligned_cols=71 Identities=25% Similarity=0.422 Sum_probs=43.3
Q ss_pred HHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCC-CChh------HHhhhccHHHHHHHHHHH
Q 007087 120 VEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDD-MPPI------EAILAPLEAELKLARQEI 192 (618)
Q Consensus 120 ldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDdd-mppi------eaiiApLeAelk~~r~Ei 192 (618)
|..-|.+.|...+-+---|.+|.++.+ .|-.+ |-|....-.+.| .+.+ ..--+||+-+||.++.+|
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~-~l~~E------L~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi 78 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENK-QLTEE------LNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQI 78 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------HHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHH
Confidence 445566667666666777777888887 33333 333333333333 2221 234478999999999998
Q ss_pred HHhhh
Q 007087 193 AKLQD 197 (618)
Q Consensus 193 ~kLqd 197 (618)
..|--
T Consensus 79 ~~Ls~ 83 (96)
T PF11365_consen 79 NELSG 83 (96)
T ss_pred HHHhh
Confidence 76643
No 373
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.64 E-value=3.2e+02 Score=28.99 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=14.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhH
Q 007087 231 DDLQNKNQELMKQIEICQEENK 252 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnk 252 (618)
++|+.+++.|+-|++.++-.++
T Consensus 229 e~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 229 EELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4566666777777777665544
No 374
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=20.64 E-value=9e+02 Score=24.56 Aligned_cols=165 Identities=20% Similarity=0.175 Sum_probs=85.9
Q ss_pred HHHHHhHHHhhhhhhhhhhhhhHHHHhHH-------HHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHH
Q 007087 122 EKLKLAENLIETKNLEIKKINDEKRASMA-------AQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAK 194 (618)
Q Consensus 122 EKLk~tE~lle~knLEiKklndEKK~alA-------AQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~k 194 (618)
|+|+.+|..|+-.|.-||+|-..=+..+. ||-+=--+|+-..-.=.+|.+.-=+-.|+ ..
T Consensus 2 ~~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~-------------~~ 68 (207)
T cd07636 2 ERLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIA-------------RS 68 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHH-------------HH
Confidence 57888888899888889988888777776 55444455666552222222211111222 11
Q ss_pred hhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHH-H-HHHHH
Q 007087 195 LQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVE-K-LTQTV 272 (618)
Q Consensus 195 LqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVE-K-LsqTv 272 (618)
|..=..+|--+....+.-+..|++.+..-|..= +-+||. ..-|-+|+-|-+-+....- +.|-+.+- | =.+.|
T Consensus 69 L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F-~kedi~-~~Ke~kK~FdK~se~~~~a----l~k~~~ls~k~K~~~~ 142 (207)
T cd07636 69 LQEFAAVLRNLEDERTRMIENASEVLITPLEKF-RKEQIG-AAKEAKKKYDKETEKYCAV----LEKHLNLSSKKKESQL 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHhhhHhhhhhHHHHH----HHHHhcCcccCCchHH
Confidence 222223333344444555566676666555432 224443 3555555555544333311 12222221 1 12244
Q ss_pred HHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHhh
Q 007087 273 RELEEAVLAGG-AAANAVRDYQRKVQEMNEERKT 305 (618)
Q Consensus 273 ~ELEEavLAgg-AaANAVRdyqrq~~eLneEk~t 305 (618)
.|.+..+.++- .--.+-=||=-|++++++-++.
T Consensus 143 eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkf 176 (207)
T cd07636 143 HEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMF 176 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555552 2234566899999999887763
No 375
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.58 E-value=4.3e+02 Score=28.54 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhhhhhH
Q 007087 114 TEELSKVEEKLKLAENLIETKNLEIKKINDE 144 (618)
Q Consensus 114 ~~el~kldEKLk~tE~lle~knLEiKklndE 144 (618)
..+|..+.++.+..-.-+..+.-++..|+++
T Consensus 279 ~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee 309 (359)
T PF10498_consen 279 QDELSEVQEKYKQASEGVSERTRELAEISEE 309 (359)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4445555555555555555666666666554
No 376
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=1.5e+03 Score=27.07 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHH-------HHhhhhHHhhhhhHHHHHHHHHHHHHhHHH--HHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 208 SKEAALLEAERTVQVAL-------AKASMVDDLQNKNQELMKQIEICQEENKIL--DKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 208 sKEaALleaeR~v~~Al-------akA~~V~dlQNkN~EL~kQiEIcqEEnkiL--dk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
..+..+-+.++++..+- ..-+-++|.|-+|+-|.-|++.--..|.-| +++.- -.++--|......|++-
T Consensus 434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~--~q~~k~L~~ek~~l~~~ 511 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKA--NQKHKLLREEKSKLEEQ 511 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44555555555544332 122345899999999999999988877633 22110 12344566666678888
Q ss_pred HHhchhhHHHHHHHHHHH----HHHHHHHhhHHHHHhh
Q 007087 279 VLAGGAAANAVRDYQRKV----QEMNEERKTLDRELAR 312 (618)
Q Consensus 279 vLAggAaANAVRdyqrq~----~eLneEk~tLerELAR 312 (618)
|+..++.+++..+|-.++ .-+......|.-||..
T Consensus 512 i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~ 549 (698)
T KOG0978|consen 512 ILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTT 549 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHH
Confidence 888888888866664443 4455556666666643
No 377
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.37 E-value=1.3e+03 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 107 EKAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 107 dKAveel~~el~kldEKLk~tE~lle~ 133 (618)
.++++-|.++|..+..+|...|..|+.
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888888888877764
No 378
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=20.37 E-value=7.9e+02 Score=27.73 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=58.6
Q ss_pred hhhhHHHhhhhHHHHHHHHHHHHHHhhHH------------------------HHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 007087 76 NRLENEVRDKDRELGEAQAEIKALRLSER------------------------LREKAVEELTEELSKVEEKLKLAENLI 131 (618)
Q Consensus 76 nRLeN~lr~KdrEL~~A~aEIkaLr~se~------------------------~kdKAveel~~el~kldEKLk~tE~ll 131 (618)
|.|+++|.-...|...|...|.+|.-+-+ -+|.|-..|.+||..++.-+..++..|
T Consensus 288 ~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL 367 (421)
T KOG2685|consen 288 NKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKL 367 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988765432 367888889999999888888887777
Q ss_pred hhhhhhhhhhhhHHHHhHHHHHHHH
Q 007087 132 ETKNLEIKKINDEKRASMAAQFAAE 156 (618)
Q Consensus 132 e~knLEiKklndEKK~alAAQfAAE 156 (618)
..-.-.++.|.+-+ +.|..-.|.-
T Consensus 368 ~eA~~~l~~L~~~~-~rLe~di~~k 391 (421)
T KOG2685|consen 368 DEAEDSLKLLVNHR-ARLERDIAIK 391 (421)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 76444444444433 3565555544
No 379
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=20.34 E-value=1.4e+02 Score=30.00 Aligned_cols=34 Identities=47% Similarity=0.649 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhhc-hHHHHHHHhhHHHHHHH
Q 007087 182 EAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 215 (618)
Q Consensus 182 eAelk~~r~Ei~kLqdd-nkALerltKsKEaALle 215 (618)
|-|++.+..+|+||.|+ ++-+|.+++.||+.|.+
T Consensus 152 EDe~k~~e~~iQKlTd~yi~~iD~~~~~KEkEim~ 186 (187)
T COG0233 152 EDEVKKAEEEIQKLTDEYIKKIDELLKDKEKEIME 186 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66888899999999987 67899999999998864
No 380
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=20.33 E-value=1.5e+03 Score=26.87 Aligned_cols=127 Identities=17% Similarity=0.253 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhh-------hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhh--
Q 007087 215 EAERTVQVALAKAS-------MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAA-- 285 (618)
Q Consensus 215 eaeR~v~~AlakA~-------~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAa-- 285 (618)
.+.+++|..+.... ...-++.+.+.+..=++-....+.++.+--+.-..=++=|+-+..+|.-.|-.-+..
T Consensus 453 ~~~~~lr~~~~~~~~~~~s~~~~~~~~~e~~k~~~~l~~a~~~d~~~~~~~~~~~~~~~ll~~~~~e~~~~lp~~~~~~~ 532 (714)
T KOG2220|consen 453 ALDNKLRAKLGQRWTRTRSSELTLALYEELEKLREVLEPAKAADVQLKKAFEAHKKNIRLLSLPPPELQPSLPSLDGPLN 532 (714)
T ss_pred HhhHHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcchhhhcCCCchhhhhcCCCCCCCC
Confidence 33445555554443 234455566666666666666666665444444444555666666666566544412
Q ss_pred ------HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh---hh-hhhhhccccc------CCCCccchhhHHHH
Q 007087 286 ------ANAVRDYQRKVQEMNEERKTLDRELARAKVTAN---RV-ATVVANEWKD------ANDKVMPVKQWLEE 344 (618)
Q Consensus 286 ------ANAVRdyqrq~~eLneEk~tLerELARaKv~AN---RV-A~vvAnEWKD------~ndkVmPVKqWLEE 344 (618)
..-++.|-.++.+|..++.+|+-+| ++..+ =. +.+..+.-+. .+++.-|++.|+++
T Consensus 533 ~~~~~~~~~~k~~l~~~~e~k~~r~~L~~~l---~~~i~~ddi~~sl~~~~~~~e~dl~~~~l~k~~~l~~~i~~ 604 (714)
T KOG2220|consen 533 PNSDEIVRQLKGYLDDLEELKAEREKLEGDL---KVDIFKDDILNSLAIHGGIKEEDLFVSELGKFDPLKWLIHQ 604 (714)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHhcccchhhhhcccccHHHHHHHHhhccchHHHHHHH
Confidence 2338889999999999999999999 44444 00 1112222222 24455699988865
No 381
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=20.29 E-value=1.7e+03 Score=27.79 Aligned_cols=216 Identities=20% Similarity=0.279 Sum_probs=103.3
Q ss_pred HHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh--------------hhhHHHHhHHHHHHHH
Q 007087 92 AQAEIKALRLSERLREK-AVEELTEELSKVEEKLKLAENLIETKNLEIKK--------------INDEKRASMAAQFAAE 156 (618)
Q Consensus 92 A~aEIkaLr~se~~kdK-Aveel~~el~kldEKLk~tE~lle~knLEiKk--------------lndEKK~alAAQfAAE 156 (618)
+..+|+..+..+.+--+ --+....-...-|.++.-+|+.|++.|.++++ |..|-.+.|.--||-.
T Consensus 898 caE~i~q~kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael 977 (1424)
T KOG4572|consen 898 CAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAEL 977 (1424)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHH
Confidence 33567877777654322 22222233344577788889999988887765 4444445555555554
Q ss_pred HHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHH-------HhhhchHHHHHHHh-hHHHHHHHHHHHH-HHHHHHh
Q 007087 157 ATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIA-------KLQDDNKALDRLTK-SKEAALLEAERTV-QVALAKA 227 (618)
Q Consensus 157 AtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~-------kLqddnkALerltK-sKEaALleaeR~v-~~AlakA 227 (618)
-.|---|---|+|.. +--.+--+|-+.+-.|-+.+ ..-..+.-|+.++. -||..|.+-+-.+ ....-+|
T Consensus 978 ~eleqk~le~~eDea--~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~ 1055 (1424)
T KOG4572|consen 978 IELEQKALECKEDEA--FARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRA 1055 (1424)
T ss_pred HHHHHHHHHHhhhHH--HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcch
Confidence 444444444444431 11122333333333333333 32223333333322 2333333322110 0111112
Q ss_pred hhhHHhhhhhHHHHHHHHH--HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--h-----hhHHHH----HHHHH
Q 007087 228 SMVDDLQNKNQELMKQIEI--CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG--G-----AAANAV----RDYQR 294 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEI--cqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAg--g-----AaANAV----Rdyqr 294 (618)
.|-+++--.-.+ |-.|-+ |-.-|+.++-.+-.|+-|.+.|-.++..|-..|... | |--|.+ .|...
T Consensus 1056 kie~efAa~eae-mdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiekDmca 1134 (1424)
T KOG4572|consen 1056 KIEDEFAAIEAE-MDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCA 1134 (1424)
T ss_pred hHHHHHHHHHhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHH
Confidence 222222111111 222222 666666665556667777777777777777777643 3 222331 22222
Q ss_pred --HHHHHHHHHhhHHHHH
Q 007087 295 --KVQEMNEERKTLDREL 310 (618)
Q Consensus 295 --q~~eLneEk~tLerEL 310 (618)
-|+++.+|-.+++.++
T Consensus 1135 selfneheeeS~ifdaa~ 1152 (1424)
T KOG4572|consen 1135 SELFNEHEEESGIFDAAG 1152 (1424)
T ss_pred HHHHHHhhhhcchHHHHH
Confidence 4677888888887776
No 382
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.27 E-value=2.7e+02 Score=29.86 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=24.3
Q ss_pred CCC-chh-HhhhhhhHHHhhhhHHHHHHHHHHHHHHh
Q 007087 67 GSD-PVK-VELNRLENEVRDKDRELGEAQAEIKALRL 101 (618)
Q Consensus 67 gsd-Pv~-~ElnRLeN~lr~KdrEL~~A~aEIkaLr~ 101 (618)
|.| |-. -+++.|+.+++....+|......|..|+.
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555 544 34578888888887777777777766655
No 383
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=20.18 E-value=1.5e+03 Score=26.81 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhcccccccchhHHHHHHHHh
Q 007087 515 DLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKK 548 (618)
Q Consensus 515 D~LQKEVi~LRKa~~eKdqsLkdKddaIeML~KK 548 (618)
|.+...+-.|.+.+..+.-.+.--+++++.|+++
T Consensus 770 ~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 770 RIVEIQLGRLRKRLAERKITLELSDAALDFLAEA 803 (852)
T ss_pred HHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHh
Confidence 3334444444554544444566666777777665
No 384
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=20.13 E-value=7e+02 Score=23.19 Aligned_cols=51 Identities=37% Similarity=0.396 Sum_probs=33.1
Q ss_pred HhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 194 KLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 194 kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
.=|-.+..|.--++.||.+|--++-- +|-|.=+|+-|-|.|+..|+|-.+.
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE----------~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQE----------NDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566777777777777665533 3446667777777777777776543
Done!