Query 007087
Match_columns 618
No_of_seqs 50 out of 52
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 16:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.1 0.0043 1.5E-07 53.8 32.2 29 73-101 13-41 (284)
2 1c1g_A Tropomyosin; contractIl 97.9 0.01 3.4E-07 51.5 37.9 48 77-124 10-57 (284)
3 1i84_S Smooth muscle myosin he 97.7 5.8E-05 2E-09 84.9 8.2 50 340-390 1113-1163(1184)
4 1i84_S Smooth muscle myosin he 97.6 0.00018 6.3E-09 80.9 9.9 41 87-127 857-897 (1184)
5 3vkg_A Dynein heavy chain, cyt 95.9 1.5 5.3E-05 55.3 26.1 86 179-278 2010-2099(3245)
6 3na7_A HP0958; flagellar bioge 95.4 1.9 6.5E-05 41.0 19.7 15 281-295 170-184 (256)
7 3na7_A HP0958; flagellar bioge 94.9 1.7 5.9E-05 41.3 17.6 40 181-220 37-76 (256)
8 2dfs_A Myosin-5A; myosin-V, in 93.3 0.95 3.3E-05 51.6 14.4 56 188-257 958-1013(1080)
9 3vkg_A Dynein heavy chain, cyt 92.8 17 0.00057 46.5 25.0 91 207-307 2010-2104(3245)
10 2dfs_A Myosin-5A; myosin-V, in 90.5 6 0.0002 45.3 16.6 27 176-202 984-1010(1080)
11 3oja_B Anopheles plasmodium-re 89.9 9.2 0.00031 38.8 15.8 45 228-279 537-581 (597)
12 2v71_A Nuclear distribution pr 88.6 17 0.00059 34.7 18.1 80 241-359 87-170 (189)
13 3mq9_A Bone marrow stromal ant 86.5 10 0.00035 37.7 13.5 96 208-316 370-465 (471)
14 1f5n_A Interferon-induced guan 85.7 9.9 0.00034 40.9 13.7 95 208-309 484-582 (592)
15 3oja_B Anopheles plasmodium-re 77.7 31 0.0011 34.9 13.3 30 109-138 457-486 (597)
16 2v71_A Nuclear distribution pr 76.9 53 0.0018 31.4 19.1 54 178-231 97-150 (189)
17 2oqq_A Transcription factor HY 73.1 4.3 0.00015 31.2 4.2 30 229-262 11-40 (42)
18 1go4_E MAD1 (mitotic arrest de 71.5 7.4 0.00025 34.1 6.0 61 294-363 26-95 (100)
19 3hnw_A Uncharacterized protein 70.6 27 0.00092 31.4 9.6 59 72-130 67-125 (138)
20 1t2k_D Cyclic-AMP-dependent tr 70.5 23 0.00078 27.4 8.0 52 203-254 4-55 (61)
21 1ci6_A Transcription factor AT 69.1 16 0.00054 28.9 6.9 51 204-254 6-56 (63)
22 3hnw_A Uncharacterized protein 68.8 23 0.00079 31.9 8.8 59 88-146 69-127 (138)
23 2wt7_A Proto-oncogene protein 68.0 35 0.0012 26.7 8.7 52 203-254 5-56 (63)
24 1x79_B RAB GTPase binding effe 66.5 61 0.0021 28.9 10.8 85 229-313 7-96 (112)
25 3mxz_A Tubulin-specific chaper 66.5 42 0.0014 29.7 9.8 73 199-276 14-87 (116)
26 1dh3_A Transcription factor CR 65.2 15 0.00051 28.5 5.9 47 203-249 4-50 (55)
27 2k48_A Nucleoprotein; viral pr 64.6 33 0.0011 30.7 8.7 62 188-249 33-103 (107)
28 3tnu_B Keratin, type II cytosk 63.8 39 0.0013 29.4 9.0 85 228-312 15-100 (129)
29 1fxk_C Protein (prefoldin); ar 63.7 38 0.0013 28.9 8.9 85 230-318 3-119 (133)
30 3o0z_A RHO-associated protein 63.4 1E+02 0.0035 29.1 15.4 68 236-313 7-74 (168)
31 3tnu_A Keratin, type I cytoske 63.4 32 0.0011 30.0 8.5 72 265-351 54-131 (131)
32 1hjb_A Ccaat/enhancer binding 63.3 43 0.0015 28.5 8.9 64 197-260 12-75 (87)
33 1jnm_A Proto-oncogene C-JUN; B 63.3 23 0.00079 27.6 6.7 51 204-254 5-55 (62)
34 3oja_A Leucine-rich immune mol 61.9 1.3E+02 0.0045 30.0 14.6 46 181-226 433-478 (487)
35 1gu4_A CAAT/enhancer binding p 61.8 39 0.0013 28.2 8.2 62 197-258 12-73 (78)
36 4emc_A Monopolin complex subun 59.6 36 0.0012 32.9 8.6 60 75-134 22-81 (190)
37 3mq7_A Bone marrow stromal ant 59.5 89 0.0031 28.4 10.7 73 230-315 20-92 (121)
38 3u1c_A Tropomyosin alpha-1 cha 59.4 81 0.0028 26.7 12.6 35 268-302 67-101 (101)
39 2ic6_A Nucleocapsid protein; h 59.4 51 0.0018 28.0 8.6 60 191-250 6-74 (78)
40 2v4h_A NF-kappa-B essential mo 58.0 33 0.0011 30.7 7.5 68 116-199 25-92 (110)
41 1gk4_A Vimentin; intermediate 56.4 30 0.001 28.4 6.7 49 264-312 2-51 (84)
42 1gd2_E Transcription factor PA 56.4 17 0.00057 29.9 5.0 45 207-254 25-69 (70)
43 3nmd_A CGMP dependent protein 56.0 31 0.0011 28.9 6.6 46 75-120 21-66 (72)
44 3lhp_S 4E10_D0_1ISEA_004_N (T9 55.8 85 0.0029 28.5 9.9 91 104-215 18-122 (123)
45 3a7p_A Autophagy protein 16; c 54.2 99 0.0034 28.9 10.4 73 187-269 72-145 (152)
46 3lf9_A 4E10_D0_1IS1A_001_C (T1 52.5 39 0.0013 30.7 7.2 94 106-215 13-112 (121)
47 2ocy_A RAB guanine nucleotide 51.9 1.5E+02 0.0052 27.5 15.4 29 178-206 15-43 (154)
48 3iyk_A VP5; icosahedral virus; 51.2 2.8E+02 0.0095 30.4 16.9 170 61-288 74-245 (526)
49 1m1j_B Fibrinogen beta chain; 51.2 84 0.0029 33.5 10.6 28 173-200 165-192 (464)
50 2ic9_A Nucleocapsid protein; h 50.7 82 0.0028 27.7 8.7 61 192-252 7-76 (96)
51 3mq7_A Bone marrow stromal ant 48.6 1.6E+02 0.0054 26.8 11.2 71 210-280 31-109 (121)
52 1ic2_A Tropomyosin alpha chain 48.0 66 0.0023 26.1 7.3 58 69-133 16-73 (81)
53 2p22_A Suppressor protein STP2 46.7 1.9E+02 0.0066 27.2 12.8 67 188-254 10-89 (174)
54 2efr_A General control protein 46.5 1.8E+02 0.0062 26.9 16.6 18 265-282 100-117 (155)
55 1wt6_A Myotonin-protein kinase 45.8 1E+02 0.0034 26.4 8.3 20 263-286 59-78 (81)
56 4fi5_A Nucleoprotein; structur 45.7 63 0.0022 29.1 7.4 27 223-249 64-90 (113)
57 3u59_A Tropomyosin beta chain; 44.3 1.4E+02 0.0048 25.0 12.1 16 233-248 49-64 (101)
58 1x8y_A Lamin A/C; structural p 43.4 24 0.00081 29.3 4.1 17 335-351 61-82 (86)
59 3nmd_A CGMP dependent protein 43.4 36 0.0012 28.5 5.1 38 107-144 25-62 (72)
60 3oja_A Leucine-rich immune mol 43.2 2.6E+02 0.009 27.8 12.8 74 150-228 323-398 (487)
61 3qne_A Seryl-tRNA synthetase, 41.8 87 0.003 33.3 9.0 34 67-100 26-60 (485)
62 3a7p_A Autophagy protein 16; c 40.5 1.8E+02 0.0063 27.1 9.9 50 80-129 68-117 (152)
63 1l8d_A DNA double-strand break 40.4 1.5E+02 0.0053 24.3 9.5 32 108-139 64-95 (112)
64 2v4h_A NF-kappa-B essential mo 39.9 2.1E+02 0.0071 25.7 10.9 79 73-156 24-102 (110)
65 2fxo_A Myosin heavy chain, car 38.6 2E+02 0.0067 25.0 17.2 48 108-156 13-60 (129)
66 2p22_A Suppressor protein STP2 38.1 2.4E+02 0.0081 26.6 10.4 42 88-129 35-77 (174)
67 3mov_A Lamin-B1; LMNB1, B-type 37.5 1.7E+02 0.0058 24.9 8.5 68 230-311 14-82 (95)
68 2pms_C Pneumococcal surface pr 37.2 69 0.0023 29.2 6.3 48 173-248 41-88 (125)
69 3ol1_A Vimentin; structural ge 37.2 2.1E+02 0.007 24.8 12.7 95 169-264 13-112 (119)
70 3htk_A Structural maintenance 37.2 1.3E+02 0.0045 22.6 8.4 51 69-119 1-51 (60)
71 3o0z_A RHO-associated protein 36.8 2.8E+02 0.0095 26.2 11.4 93 99-203 32-124 (168)
72 1deq_A Fibrinogen (alpha chain 36.7 4.1E+02 0.014 28.1 14.3 40 239-280 117-158 (390)
73 3ibp_A Chromosome partition pr 36.7 1.3E+02 0.0045 30.8 9.0 51 110-161 5-55 (302)
74 1h7c_A Tubulin-specific chaper 36.3 2.1E+02 0.0073 24.7 9.2 70 199-280 13-83 (108)
75 2i1j_A Moesin; FERM, coiled-co 35.6 24 0.00082 37.6 3.7 35 228-262 511-547 (575)
76 2qyw_A Vesicle transport throu 35.4 75 0.0026 26.9 6.0 56 111-198 45-100 (102)
77 1l8d_A DNA double-strand break 35.1 1.7E+02 0.006 24.0 8.1 20 289-308 66-85 (112)
78 1qsd_A Protein (beta-tubulin b 35.0 2.2E+02 0.0077 24.6 9.3 69 200-279 11-80 (106)
79 2zqm_A Prefoldin beta subunit 34.5 1.9E+02 0.0065 23.7 10.9 38 286-323 12-49 (117)
80 3onj_A T-snare VTI1; helix, HA 34.3 1.3E+02 0.0045 25.1 7.3 58 112-201 31-91 (97)
81 3qh9_A Liprin-beta-2; coiled-c 33.7 2.2E+02 0.0076 24.4 8.5 48 90-144 22-76 (81)
82 1wle_A Seryl-tRNA synthetase; 33.7 2.1E+02 0.0071 30.4 10.3 29 71-99 68-96 (501)
83 3vem_A Helicase protein MOM1; 33.6 1.9E+02 0.0066 26.1 8.5 64 65-141 31-98 (115)
84 1m1j_B Fibrinogen beta chain; 31.9 1.9E+02 0.0067 30.7 9.7 49 66-114 93-141 (464)
85 1gd2_E Transcription factor PA 31.8 1.4E+02 0.0048 24.4 6.8 51 215-274 18-68 (70)
86 3ghg_B Fibrinogen beta chain; 31.4 76 0.0026 34.0 6.6 45 67-111 89-133 (461)
87 1vcs_A Vesicle transport throu 31.0 69 0.0024 27.1 5.1 55 114-200 37-91 (102)
88 4dzn_A Coiled-coil peptide CC- 30.7 34 0.0012 24.8 2.7 20 561-580 5-24 (33)
89 3q8t_A Beclin-1; autophagy, AT 30.6 2.5E+02 0.0084 23.8 9.5 79 75-154 6-84 (96)
90 2efr_A General control protein 30.3 3.3E+02 0.011 25.2 21.2 58 75-146 2-59 (155)
91 2jee_A YIIU; FTSZ, septum, coi 30.0 2.6E+02 0.0088 23.8 10.2 61 215-278 10-70 (81)
92 4afl_A P29ING4, inhibitor of g 30.0 2.4E+02 0.0081 23.4 9.9 33 67-99 12-44 (104)
93 2lw1_A ABC transporter ATP-bin 29.7 72 0.0025 26.2 4.8 45 264-312 30-74 (89)
94 2zqm_A Prefoldin beta subunit 29.6 1.9E+02 0.0065 23.7 7.4 41 105-145 67-107 (117)
95 2eqb_B RAB guanine nucleotide 29.6 2.8E+02 0.0097 24.2 11.8 23 289-311 71-93 (97)
96 4gkw_A Spindle assembly abnorm 29.5 55 0.0019 30.7 4.5 39 223-261 6-44 (167)
97 2dq0_A Seryl-tRNA synthetase; 28.6 1.5E+02 0.0051 30.9 8.1 29 71-99 29-57 (455)
98 3u59_A Tropomyosin beta chain; 27.6 2.7E+02 0.0093 23.3 11.8 13 289-301 88-100 (101)
99 1fxk_C Protein (prefoldin); ar 27.1 1.1E+02 0.0038 26.0 5.8 40 536-575 84-126 (133)
100 3ghg_A Fibrinogen alpha chain; 27.1 6.7E+02 0.023 27.7 13.2 102 183-296 64-182 (562)
101 1ses_A Seryl-tRNA synthetase; 26.5 1.4E+02 0.0047 30.7 7.3 65 67-131 22-87 (421)
102 2fup_A Hypothetical protein PA 26.3 3E+02 0.01 23.3 9.2 41 177-217 8-56 (157)
103 2qfa_B Borealin; three-helical 26.3 98 0.0034 25.1 4.9 48 225-274 6-53 (62)
104 1ik9_A DNA repair protein XRCC 26.1 4.3E+02 0.015 25.1 11.0 59 231-296 135-198 (213)
105 4emc_A Monopolin complex subun 25.6 1.6E+02 0.0056 28.4 7.1 43 178-220 8-50 (190)
106 3q8t_A Beclin-1; autophagy, AT 25.3 3.1E+02 0.011 23.2 11.2 40 90-129 7-46 (96)
107 1t2k_D Cyclic-AMP-dependent tr 25.3 1.8E+02 0.0062 22.3 6.1 20 262-281 42-61 (61)
108 2xnx_M M protein, M1-BC1; cell 24.6 46 0.0016 31.1 3.0 13 134-146 99-111 (146)
109 1fxk_A Prefoldin; archaeal pro 24.5 2.8E+02 0.0095 22.4 9.2 76 286-367 7-96 (107)
110 1go4_E MAD1 (mitotic arrest de 24.1 1.4E+02 0.0047 26.2 5.8 31 173-203 65-95 (100)
111 3lss_A Seryl-tRNA synthetase; 23.5 3.1E+02 0.011 29.2 9.4 33 67-99 30-63 (484)
112 4dci_A Uncharacterized protein 23.2 2.5E+02 0.0085 25.9 7.6 29 100-128 21-49 (150)
113 3swk_A Vimentin; cytoskeleton, 23.1 3.2E+02 0.011 22.6 8.1 30 229-258 57-86 (86)
114 3he4_A Synzip6; heterodimeric 23.0 77 0.0026 25.2 3.6 33 172-204 20-52 (56)
115 2eqb_B RAB guanine nucleotide 22.7 2.8E+02 0.0097 24.2 7.5 29 70-98 2-30 (97)
116 1j1d_C Troponin I, TNI; THIN f 22.6 4.4E+02 0.015 24.0 11.2 46 230-276 60-106 (133)
117 1nkp_A C-MYC, MYC proto-oncoge 22.5 1.8E+02 0.0063 24.0 6.1 25 230-254 54-78 (88)
118 2c5k_T Syntaxin TLG1, T-snare 22.3 3.5E+02 0.012 22.9 7.8 45 266-310 46-91 (95)
119 2dgc_A Protein (GCN4); basic d 21.9 1.9E+02 0.0064 22.9 5.7 42 207-248 16-57 (63)
120 3ghg_A Fibrinogen alpha chain; 20.0 5.8E+02 0.02 28.2 10.7 16 287-302 138-153 (562)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.08 E-value=0.0043 Score=53.78 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=13.0
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHHHh
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKALRL 101 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~ 101 (618)
.++..+...+.+...++..+..++..+..
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 41 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRSKQLED 41 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.89 E-value=0.01 Score=51.46 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=19.2
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007087 77 RLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKL 124 (618)
Q Consensus 77 RLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKL 124 (618)
-|+..+..-...+.....+|..|+.....-...+.++..++..+...+
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.69 E-value=5.8e-05 Score=84.87 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHh-hhhHHHHHHHHHHHHHHHHHhhcCC
Q 007087 340 QWLEERRFLQGEMQQLRDRLAITERT-AKSEAQLKEKYHLRLKVLEESLRGS 390 (618)
Q Consensus 340 qWLEErRflQGEmqrLrdKLAiaERt-AkaEaQLKeK~klRLk~lEe~Lk~~ 390 (618)
+.-.+..-++.+|..|.+.|...+.. .+.+.+. +.++..+..|.+.+...
T Consensus 1113 ~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~-~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQK-RDLSEELEALKTELEDT 1163 (1184)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33344444666777776666543221 1222222 35555666666665544
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.56 E-value=0.00018 Score=80.89 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007087 87 RELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLA 127 (618)
Q Consensus 87 rEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~t 127 (618)
+|+.+-..|+..|+..-..-++.+.++..++..+.+.+...
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443333333333444444444444433333
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.87 E-value=1.5 Score=55.31 Aligned_cols=86 Identities=10% Similarity=0.193 Sum_probs=47.7
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHH----hHHH
Q 007087 179 APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEE----NKIL 254 (618)
Q Consensus 179 ApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEE----nkiL 254 (618)
+|+.++|..+..+.++.++...+++..++.-|..|...+...+.+... -+.|..+++.|+.- .+++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e----------k~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE----------TEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888877777766666666555555555554444433322 23444455555432 1122
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 255 DKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 255 dk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
..+ -.|-++-++++.+|++.
T Consensus 2080 ~gL----~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2080 DNL----NSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp HHH----HHHHHHHHHHHHHHHHH
T ss_pred Hhh----hhccccHHHHHHHHHHH
Confidence 222 12445566677776653
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.40 E-value=1.9 Score=40.97 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=9.1
Q ss_pred hchhhHHHHHHHHHH
Q 007087 281 AGGAAANAVRDYQRK 295 (618)
Q Consensus 281 AggAaANAVRdyqrq 295 (618)
+++--..-+..|.+.
T Consensus 170 ~~~i~~~lL~~Yeri 184 (256)
T 3na7_A 170 VEKTEPKIYSFYERI 184 (256)
T ss_dssp HHTSCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHH
Confidence 344455668888654
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.89 E-value=1.7 Score=41.30 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHH
Q 007087 181 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 220 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v 220 (618)
|+.++...+..+.+++.....+++-.+..|..+.++...+
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.30 E-value=0.95 Score=51.61 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 007087 188 ARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 257 (618)
Q Consensus 188 ~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~ 257 (618)
.-+|+.+|+.|+..|+.+.+.++.+ + ..|..|+.++.+|.++++....|.+-|+.-
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~----~----------~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNA----T----------NRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888877777754433311 1 346677777777777777777777766443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.81 E-value=17 Score=46.47 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhH
Q 007087 207 KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAA 286 (618)
Q Consensus 207 KsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaA 286 (618)
.-|..+|.+|+..+..|.++- ..+|+++.+|...|+..+++.. ..+.|.++|...+...+.-+..+..-.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L---~~~~~~L~~le~~l~~L~~~~~-------~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQ---DEIVATITALEKSIATYKEEYA-------TLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776666543 3445555555555555555442 234444555555555544444333333
Q ss_pred HHHH----HHHHHHHHHHHHHhhHH
Q 007087 287 NAVR----DYQRKVQEMNEERKTLD 307 (618)
Q Consensus 287 NAVR----dyqrq~~eLneEk~tLe 307 (618)
+.+- .+..++.++..+..+|-
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHhcc
Confidence 3322 13444445555444443
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.50 E-value=6 Score=45.25 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=14.0
Q ss_pred HhhhccHHHHHHHHHHHHHhhhchHHH
Q 007087 176 AILAPLEAELKLARQEIAKLQDDNKAL 202 (618)
Q Consensus 176 aiiApLeAelk~~r~Ei~kLqddnkAL 202 (618)
.-+.-|+.++...+.++.++..++++|
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.87 E-value=9.2 Score=38.79 Aligned_cols=45 Identities=27% Similarity=0.320 Sum_probs=27.3
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007087 228 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV 279 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEav 279 (618)
...+.+++++.++.++++..++...-| . -|+..+.+.+.+|++.+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l---~----~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAEL---R----QETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHTT
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHH---H----HHHHHHHHHHHHHHHHh
Confidence 334667777777777777665544433 1 24566666677766654
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.61 E-value=17 Score=34.66 Aligned_cols=80 Identities=28% Similarity=0.396 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----hchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 007087 241 MKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVL----AGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVT 316 (618)
Q Consensus 241 ~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavL----AggAaANAVRdyqrq~~eLneEk~tLerELARaKv~ 316 (618)
.++|...|.|.--|-.++ +.|..-|++||-+=- +--++...+-|++.+....-|....|+.||.
T Consensus 87 ~~~~~~Lq~el~~l~~~~-------~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~----- 154 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIK-------EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD----- 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333555555544444443 345555555554321 1235566789999999999999999999983
Q ss_pred hhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHH
Q 007087 317 ANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRL 359 (618)
Q Consensus 317 ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKL 359 (618)
|+--|+-++|||||.+
T Consensus 155 ---------------------------EKe~l~~~~QRLkdE~ 170 (189)
T 2v71_A 155 ---------------------------EKESLLVSVQRLKDEA 170 (189)
T ss_dssp ---------------------------HHHHHHCCC-------
T ss_pred ---------------------------HHHHHHHHHHHHHHHH
Confidence 3445788889998887
No 13
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.53 E-value=10 Score=37.74 Aligned_cols=96 Identities=24% Similarity=0.240 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 007087 208 SKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAAN 287 (618)
Q Consensus 208 sKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaAN 287 (618)
+-+.||.+++..++.++.......+..|-+..|.+||+.+|.----+ ..| -.-...||--|-+.+.+--+-
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~-- 440 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV---EAQ----AATANHTVMALMASLDAEKAQ-- 440 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHH---HHH----hhhcchhHHHHHHHHHHHHHH--
Confidence 45888999999999999999999999999999999999887533222 122 122334555555554433111
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 007087 288 AVRDYQRKVQEMNEERKTLDRELARAKVT 316 (618)
Q Consensus 288 AVRdyqrq~~eLneEk~tLerELARaKv~ 316 (618)
-+.+++||+.|..+|+.+|.-+.+-
T Consensus 441 ----~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 441 ----GQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2247888888888888888655543
No 14
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=85.68 E-value=9.9 Score=40.90 Aligned_cols=95 Identities=24% Similarity=0.338 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--h
Q 007087 208 SKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK--ILDKMHRQKVAEVEKLTQTVRELEEAVLAG--G 283 (618)
Q Consensus 208 sKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk--iLdk~hRQKvaEVEKLsqTv~ELEEavLAg--g 283 (618)
.||+++.+....-..|.+-+.+.++.|.+++..|++-+...+|+- +-+||-+-+. +.++|.|-++-.- .
T Consensus 484 ~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~-------~~~~e~~~~~~~~~~~ 556 (592)
T 1f5n_A 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV-------QLLKEQERTLALKLQE 556 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 356666666666667777788889999999999998888777775 5556654322 2223333333222 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHH
Q 007087 284 AAANAVRDYQRKVQEMNEERKTLDRE 309 (618)
Q Consensus 284 AaANAVRdyqrq~~eLneEk~tLerE 309 (618)
-+...-..|+.+...|+.|...|.++
T Consensus 557 ~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 557 QEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222233889999999999988887
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.68 E-value=31 Score=34.94 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q 007087 109 AVEELTEELSKVEEKLKLAENLIETKNLEI 138 (618)
Q Consensus 109 Aveel~~el~kldEKLk~tE~lle~knLEi 138 (618)
.+.++..++.++++++..+|..+..+.-+|
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777666666665554443
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.93 E-value=53 Score=31.37 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=40.9
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhH
Q 007087 178 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVD 231 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~ 231 (618)
|+-|......++..|-.|--.|--|||-.+...+.|...+..+..|+++-.+++
T Consensus 97 l~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE 150 (189)
T 2v71_A 97 LSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666777777778888888888888888888888888887774
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=73.07 E-value=4.3 Score=31.23 Aligned_cols=30 Identities=43% Similarity=0.638 Sum_probs=26.7
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKV 262 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKv 262 (618)
-|.||+++|.||...|-..|.||-.| ||.+
T Consensus 11 r~k~le~~naeLEervstLq~EN~mL----Rqvl 40 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQML----RHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH----HHHh
Confidence 46899999999999999999999988 7643
No 18
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.54 E-value=7.4 Score=34.11 Aligned_cols=61 Identities=25% Similarity=0.436 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchh---------hHHHHhhhhHHHHHHHHHHHHHhH
Q 007087 294 RKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVK---------QWLEERRFLQGEMQQLRDRLAITE 363 (618)
Q Consensus 294 rq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVK---------qWLEErRflQGEmqrLrdKLAiaE 363 (618)
+....|.+++..||-+|.+.. .-|++-..+-||+|.+ +.-++.--||.|+.+||.++...|
T Consensus 26 ~E~~rLr~~~~~LE~~Le~~~---------l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 26 GERSRLEEEKRMLEAQLERRA---------LQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---------CCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------hccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666664321 3466666677888754 344455556777777776665544
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.61 E-value=27 Score=31.41 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=32.9
Q ss_pred hHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007087 72 KVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENL 130 (618)
Q Consensus 72 ~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~l 130 (618)
..|+..++.+......++.+-..||..|+..-..-+-.++++..++.++.+++..++..
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555666665555555555555555555555555554443
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.53 E-value=23 Score=27.43 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=39.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 203 DRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 203 erltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
.++.+++.||.-.=+|.-+-....-.-|++|...|.+|..+|...++|+.-|
T Consensus 4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888777777777777777778888888888888887777777665
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.10 E-value=16 Score=28.92 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 204 RLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 204 rltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
..-+++.||---=++.-+-....-.-|++|...|.+|..+|+..+.|+..|
T Consensus 6 Kr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 6 KMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666655566666667777788999999999999999999999988
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.83 E-value=23 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 88 ELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 88 EL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
||-.++.++..|+..-..+++-+..|..+|..++.++...+..++...-++..|..+..
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444455555555555555555555555555554444444444433
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.00 E-value=35 Score=26.71 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=41.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 203 DRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 203 erltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
-++.++++||--.=.|..+-....-.-|+.|+..|.+|..+|...++|..-|
T Consensus 5 rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 5 IRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888899999999888887766665544
No 24
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.55 E-value=61 Score=28.88 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=60.7
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhhH---HHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHH
Q 007087 229 MVDDLQNKNQELMKQIEICQEENK-ILDKMHRQK---VAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEER 303 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQK---vaEVEKLsqTv~ELEEavLAg-gAaANAVRdyqrq~~eLneEk 303 (618)
-|+-||+....|.+|++-...+.+ +.+.++..+ ..+|-.|+..+..-|-.+..- ++-.-+.++-+.++++|...+
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998888877 445555543 356777888887777766644 666666777788888888888
Q ss_pred hhHHHHHhhh
Q 007087 304 KTLDRELARA 313 (618)
Q Consensus 304 ~tLerELARa 313 (618)
..+-.||-|.
T Consensus 87 e~V~~eL~rL 96 (112)
T 1x79_B 87 EQVSEELVRL 96 (112)
T ss_dssp HHHHTC----
T ss_pred HHHHHHHHHH
Confidence 8777777543
No 25
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=66.47 E-value=42 Score=29.68 Aligned_cols=73 Identities=26% Similarity=0.326 Sum_probs=47.5
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007087 199 NKALDRLTKSKEAALLEAERTVQVALAK-ASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 199 nkALerltKsKEaALleaeR~v~~Alak-A~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELE 276 (618)
-.++.||+|-+..---|+... .++ ..|..+ .+..+++++|.++++|-...|-.+++-=..-|.+|.+.+.+.+
T Consensus 14 tg~vkRL~KE~~~Y~kE~~~q----~~kiekmk~e-~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~ 87 (116)
T 3mxz_A 14 TSTCKRIVKELHSYEKEVERE----AAKTADMKDK-GADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELE 87 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 457788887666555554311 111 112222 4678999999999999999998888765555666666655543
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=65.20 E-value=15 Score=28.55 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=34.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 203 DRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 203 erltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
-|++++.|+|-..=.|.-.-....-.-|.+|+..|..|..|++..++
T Consensus 4 rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 4 VRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888877777655555556677788888888877776654
No 27
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=64.58 E-value=33 Score=30.65 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHH---------HHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 188 ARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQ---------VALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 188 ~r~Ei~kLqddnkALerltKsKEaALleaeR~v~---------~AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
.-..|..||+.+.+.|..+-.=-..|-.|++.+. .-..|-+.|.-||+|+-||++||-+...
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888877777665555555555555442 3345677888999999999999877654
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.80 E-value=39 Score=29.36 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhhH
Q 007087 228 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTL 306 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAg-gAaANAVRdyqrq~~eLneEk~tL 306 (618)
..+++|+....--...+.-+++|..=|-+.-..--.|++-|.....-||..|--. .--..++.+|+.++..|..+...+
T Consensus 15 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 15 TKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHhh
Q 007087 307 DRELAR 312 (618)
Q Consensus 307 erELAR 312 (618)
..+++|
T Consensus 95 r~e~~~ 100 (129)
T 3tnu_B 95 KQDMAR 100 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 29
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=63.74 E-value=38 Score=28.88 Aligned_cols=85 Identities=15% Similarity=0.305 Sum_probs=66.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH--HH----------------------H--hc-
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEE--AV----------------------L--AG- 282 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEE--av----------------------L--Ag- 282 (618)
+..|+...+.+..+++.++..-.-| +.++.|++++-.+|..|.. .. + -|
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l----~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAV----RATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence 4667778888888888888888877 7888899999999988873 11 1 11
Q ss_pred h-----hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 283 G-----AAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 283 g-----AaANAVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
| ....|+..|.+++..++.....|+..+...+--.+
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24478999999999999999999999977665444
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=63.42 E-value=1e+02 Score=29.14 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 007087 236 KNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARA 313 (618)
Q Consensus 236 kN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELARa 313 (618)
++..|-||++.+++--+ .----+.||-....|+--++- ..--.+|++|-+|.-|...+-.|+.|++..
T Consensus 7 Ki~~LekQL~E~n~kLk-------~EsE~~~rlkK~~tEl~k~~~---~~E~~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLR-------TESDTAVRLRKSHTEMSKSIS---QLESLNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp ---CTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788887655433 211222333333333322221 112247888888888888888888887543
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.41 E-value=32 Score=30.03 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCccchhhHHH
Q 007087 265 VEKLTQTVRELEEAVLAGG-AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLE 343 (618)
Q Consensus 265 VEKLsqTv~ELEEavLAgg-AaANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLE 343 (618)
++.|.....-||..|--.. --..++.+|+.++..|..+...+-.+++|- ..|.. .+|.||..|+
T Consensus 54 l~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q-----------l~EYq----~Ll~vKl~Ld 118 (131)
T 3tnu_A 54 LQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ-----------NQEYK----ILLDVKTRLE 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HHHHHHHHHH
Confidence 3333333344444443221 223457777777777666666665555443 12333 3477777775
Q ss_pred H-----hhhhHHH
Q 007087 344 E-----RRFLQGE 351 (618)
Q Consensus 344 E-----rRflQGE 351 (618)
- |++|-||
T Consensus 119 ~EIatYRkLLEGE 131 (131)
T 3tnu_A 119 QEIATYRRLLEGE 131 (131)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHhHCcC
Confidence 2 5555554
No 32
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.30 E-value=43 Score=28.45 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=48.9
Q ss_pred hchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh
Q 007087 197 DDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ 260 (618)
Q Consensus 197 ddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQ 260 (618)
+|..=.++--|+.+|+=-.=+..=+-..+...-|++|...|..|..+|+....|...|-.+-.|
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777788887777676677777888889999999999999999888888777544443
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.30 E-value=23 Score=27.55 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 204 RLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 204 rltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
+..++++||--.=+|..+-....-.-|++|...|.+|..+|...++|+.-|
T Consensus 5 rr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 5 KRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788777778888888888889999999999999999999998766
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.94 E-value=1.3e+02 Score=29.97 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007087 181 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAK 226 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~Alak 226 (618)
...+.+..+.+|.++.+.+.-++.++..=+.++.+|..+++.|..+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 4566677777888888888888888888888888888887777654
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.75 E-value=39 Score=28.18 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred hchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 007087 197 DDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMH 258 (618)
Q Consensus 197 ddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~h 258 (618)
+|..=.++--|+.+|+=-.=+..=+-..+...-|++|...|..|..+|+....|...|-.+-
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888887777777777888888999999999999999999988888875443
No 36
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=59.60 E-value=36 Score=32.85 Aligned_cols=60 Identities=25% Similarity=0.223 Sum_probs=33.6
Q ss_pred hhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 007087 75 LNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETK 134 (618)
Q Consensus 75 lnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~k 134 (618)
+..|++++.....+|.....||++|+-..+.=..-+..+...+.+..|-..+++.+++..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~L 81 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYL 81 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHc
Confidence 334555555555555555555665554322222222346666677777777888877753
No 37
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.54 E-value=89 Score=28.43 Aligned_cols=73 Identities=26% Similarity=0.287 Sum_probs=53.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRE 309 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerE 309 (618)
..+.+|-..=|..|+-..|+ .| |+..++..--.+||--|-.++..--+.. |.++++|..|..+|..+
T Consensus 20 q~ECrN~T~lLq~qLTqAQe---~l----~~~eaQAaTCNqTV~tL~~SL~~ekaq~------q~~vqeLqgEI~~Lnq~ 86 (121)
T 3mq7_A 20 VMEARNVTHLLQQELTEAQK---GF----QDVEAQAATANHTVMALMASLDAEKAQG------QKKVEELEGEITTLNHK 86 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 46778888888888888774 23 6777777777888888777766432222 77899999999999988
Q ss_pred Hhhhhh
Q 007087 310 LARAKV 315 (618)
Q Consensus 310 LARaKv 315 (618)
|--+-+
T Consensus 87 Lq~a~a 92 (121)
T 3mq7_A 87 LQDASA 92 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 855443
No 38
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=59.40 E-value=81 Score=26.71 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 007087 268 LTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEE 302 (618)
Q Consensus 268 LsqTv~ELEEavLAggAaANAVRdyqrq~~eLneE 302 (618)
|......||++--+...|=.-|-.+.|+++-|.+|
T Consensus 67 L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 67 LHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34444444544332222222366677777776653
No 39
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=59.36 E-value=51 Score=27.97 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=38.1
Q ss_pred HHHHhhhchHHHHHHHhhHHHHHHHHHHHHH---------HHHHHhhhhHHhhhhhHHHHHHHHHHHHH
Q 007087 191 EIAKLQDDNKALDRLTKSKEAALLEAERTVQ---------VALAKASMVDDLQNKNQELMKQIEICQEE 250 (618)
Q Consensus 191 Ei~kLqddnkALerltKsKEaALleaeR~v~---------~AlakA~~V~dlQNkN~EL~kQiEIcqEE 250 (618)
.|..||+.+...|..+-.=-..|-.|++.+. .-..|-..|.-||+++-+|++||-+...+
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va~ 74 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666665554444444444444432 33456778889999999999999876553
No 40
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.00 E-value=33 Score=30.74 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHh
Q 007087 116 ELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKL 195 (618)
Q Consensus 116 el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kL 195 (618)
++.-|..+|...|..|..|..+|.+++.|-- .+-++. +.||-+.+++-+..+|..+=|..-+++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~----q~~~~l------------E~I~vLkaQv~IY~~DF~aERadREkl 88 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAE----QHKIVM------------ETVPVLKAQADIYKADFQAERHAREKL 88 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------HHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 5667778888888888889998888876432 111111 235555666666555555555444444
Q ss_pred hhch
Q 007087 196 QDDN 199 (618)
Q Consensus 196 qddn 199 (618)
+..+
T Consensus 89 ~~eK 92 (110)
T 2v4h_A 89 VEKK 92 (110)
T ss_dssp HHHH
T ss_pred HhHH
Confidence 4433
No 41
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.43 E-value=30 Score=28.42 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 264 EVEKLTQTVRELEEAVLAGG-AAANAVRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAgg-AaANAVRdyqrq~~eLneEk~tLerELAR 312 (618)
|++-|..+..-||..|--.. --...+.+|+.++..+..+...+..++++
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555544332 22334666666666665555555555433
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.37 E-value=17 Score=29.89 Aligned_cols=45 Identities=27% Similarity=0.287 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 207 KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 207 KsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
.-|+..|-+.|..|..-.. ...++++.|..|..||+.++.|+.+|
T Consensus 25 eRK~~~i~~LE~~v~~le~---~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKE---LHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466667666666644332 33457777788888888887777665
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.01 E-value=31 Score=28.86 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=35.1
Q ss_pred hhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007087 75 LNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKV 120 (618)
Q Consensus 75 lnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kl 120 (618)
+-.||-.|+.|+.||-.-..-|+.|-.--..||.-|.+|..+|.|+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888888888887777777777776677777777777777664
No 44
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=55.83 E-value=85 Score=28.50 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHH--------HHHHH-----HhhhccCCC
Q 007087 104 RLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE--------ATLRR-----VHAAQKDDD 170 (618)
Q Consensus 104 ~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAE--------AtLRR-----vHa~QKDdd 170 (618)
.--||||+-..+-+.+.+.-+++. |= +.|+|..|+=+.-.. -.+|| +...+||.+
T Consensus 18 ~~~~~~~~~~~n~~~~~~~~IRl~----------iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~e 85 (123)
T 3lhp_S 18 VRMDKAVEAFKNKLDKFKAAVRKV----------FP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKE 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS----------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTT
T ss_pred HHHHHHHHHHHHHHhcCCCeEEee----------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCC
Confidence 345899999999888888776652 11 444443333222211 12334 455666665
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhc-hHHHHHHHhhHHHHHHH
Q 007087 171 MPPIEAILAPLEAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 215 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~kLqdd-nkALerltKsKEaALle 215 (618)
++ |-+.+.+..+|++|.|. ++-+|.+++.||+.|++
T Consensus 86 iS---------EDe~k~~e~eIQKLTDkyIkkID~ll~~KEKEIm~ 122 (123)
T 3lhp_S 86 IN---------WFDISQSLWDVQKLTDAAIKKIEAALADMEAWLTQ 122 (123)
T ss_dssp SC---------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54 66889999999999986 67899999999998864
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.17 E-value=99 Score=28.93 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhhHHHHH
Q 007087 187 LARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK-ILDKMHRQKVAEV 265 (618)
Q Consensus 187 ~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQKvaEV 265 (618)
..+.|+..|...++-|+--++-|.+.+.....-+. -||=++..+...+..+++||+ ++++.-.+|-.|.
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~----------aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEA 141 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI----------SGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKET 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555554443222121 234445555667788899996 7777777776666
Q ss_pred HHHH
Q 007087 266 EKLT 269 (618)
Q Consensus 266 EKLs 269 (618)
+++-
T Consensus 142 e~MN 145 (152)
T 3a7p_A 142 EAMN 145 (152)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 6653
No 46
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=52.48 E-value=39 Score=30.69 Aligned_cols=94 Identities=28% Similarity=0.287 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHH-----HhhhccCCCCChhHHhhhc
Q 007087 106 REKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRR-----VHAAQKDDDMPPIEAILAP 180 (618)
Q Consensus 106 kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRR-----vHa~QKDddmppieaiiAp 180 (618)
-||.|+-|...++|+.-=-..||..=...-.-+++.-++=|.++ --+|| +...+||.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAI-------RNIRRDAnd~lKKl~KdkeIS-------- 77 (121)
T 3lf9_A 13 MDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAV-------RNIARDAANDLAALGKDKEVN-------- 77 (121)
T ss_dssp HHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHGGGCTTSC--------
T ss_pred HHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhcCCCC--------
Confidence 47788888888877643333333333333333333333333221 12334 55677777665
Q ss_pred cHHHHHHHHHHHHHhhhc-hHHHHHHHhhHHHHHHH
Q 007087 181 LEAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 215 (618)
Q Consensus 181 LeAelk~~r~Ei~kLqdd-nkALerltKsKEaALle 215 (618)
|-+++.+..+|++|.|. ++-+|.+++.||+.|.+
T Consensus 78 -EDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI~~ 112 (121)
T 3lf9_A 78 -WFDISQALWEIQKLTDVAVKKIDEVLAAKEKELME 112 (121)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999987 67899999999998865
No 47
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.93 E-value=1.5e+02 Score=27.55 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.3
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHH
Q 007087 178 LAPLEAELKLARQEIAKLQDDNKALDRLT 206 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddnkALerlt 206 (618)
.+-||-+|--.|+++..++.-++.|+.+-
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r 43 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLK 43 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999988888888753
No 48
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=51.22 E-value=2.8e+02 Score=30.37 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=100.2
Q ss_pred HHhhhcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh
Q 007087 61 FMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKK 140 (618)
Q Consensus 61 ~~~~~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKk 140 (618)
++|-+-.-||+-+=||.=|..+.-|-+||...+.+.. +-++.-++.++.+-++|.++..= ++.+.+-
T Consensus 74 ilNV~G~~~~~pDPLsPgE~~~~~Kl~eLE~e~k~d~---~~~khn~~I~~k~g~~l~~v~~~----------~~~~~~~ 140 (526)
T 3iyk_A 74 LLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNEL---VRLKYNDKIKEKFGKELEEVYNF----------MNGEANA 140 (526)
T ss_pred HHHhcccCCCCCCCCCHhHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhh
Confidence 4555444777777789999999999999988776543 22222233333344444433221 1122222
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHH
Q 007087 141 INDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 220 (618)
Q Consensus 141 lndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v 220 (618)
-.+|.. -|+.+=..|++=++..+.|-..|+.=.+||-+ | ...
T Consensus 141 e~~e~~--------------------------q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~k-----E-------~~~ 182 (526)
T 3iyk_A 141 EIEDEK--------------------------QFDILNKAVTSYNKILTEEDLQMRRLATALQK-----E-------IGE 182 (526)
T ss_pred hhhHHH--------------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----H-------HHh
Confidence 122211 12333334566667777777777777777643 2 223
Q ss_pred HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhchhhHHH
Q 007087 221 QVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE--LEEAVLAGGAAANA 288 (618)
Q Consensus 221 ~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E--LEEavLAggAaANA 288 (618)
++..+ ..||++.-++..-|++-||+-++ -|+---|-|+--++..|.| -||.=+-|.++||+
T Consensus 183 Rt~dE-~~mi~~yr~k~~aL~~aIe~Er~------~~~EEAIqe~~dmsaeI~E~AaeEVP~vGag~At~ 245 (526)
T 3iyk_A 183 RTHAE-TVMVKEYRDKIDALKNAIEVERD------GMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATA 245 (526)
T ss_pred hcHHH-HHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHhcchHHHHHHHhhhCCcchHHHHHH
Confidence 44444 45889999999999998887442 3444557778888888888 56655555444444
No 49
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=51.17 E-value=84 Score=33.46 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=16.8
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchH
Q 007087 173 PIEAILAPLEAELKLARQEIAKLQDDNK 200 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kLqddnk 200 (618)
++...|.-|+..|...+..|.+|.....
T Consensus 165 ~~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 165 NIPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655443
No 50
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=50.72 E-value=82 Score=27.68 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHhhhchHHHHHHHhhHHHHHHHHHHHH---------HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH
Q 007087 192 IAKLQDDNKALDRLTKSKEAALLEAERTV---------QVALAKASMVDDLQNKNQELMKQIEICQEENK 252 (618)
Q Consensus 192 i~kLqddnkALerltKsKEaALleaeR~v---------~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnk 252 (618)
|..||+.+...|..+-.=-..|-.|++.+ +.-..+-..|.-||+++-+|++||-+...+-+
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555555544433333344444433 23345677888999999999999988666444
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.60 E-value=1.6e+02 Score=26.83 Aligned_cols=71 Identities=25% Similarity=0.220 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh----hHHhhhhhHHHHHH----HHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007087 210 EAALLEAERTVQVALAKASM----VDDLQNKNQELMKQ----IEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVL 280 (618)
Q Consensus 210 EaALleaeR~v~~AlakA~~----V~dlQNkN~EL~kQ----iEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavL 280 (618)
+..|-.|+..++.+.+-|.- |..|.--+.+.+.| ++..+.|.+.|...-+-.-+|||+|......|---|-
T Consensus 31 q~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 31 QQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 34455566666666665543 34555544444444 8889999999988888888889988887776654443
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=48.04 E-value=66 Score=26.09 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=36.0
Q ss_pred CchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 007087 69 DPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIET 133 (618)
Q Consensus 69 dPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~ 133 (618)
|.....+..++..+++.......+..||.+|. |=|..+.++|.+..++|..+..-|+.
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~-------kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQ-------KKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777776663 33555666666666666665555543
No 53
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=46.73 E-value=1.9e+02 Score=27.23 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=43.5
Q ss_pred HHHHHHHhhhchHHHHHHHhhH-HHHHHHHHHHHHHHHH------------HhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 188 ARQEIAKLQDDNKALDRLTKSK-EAALLEAERTVQVALA------------KASMVDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 188 ~r~Ei~kLqddnkALerltKsK-EaALleaeR~v~~Ala------------kA~~V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
.++-+++||+-+-+|+..+..- --.|+..+-.+|.++. .-.|++.|+..-++|.++|+++.+....+
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999998888733 3345555555655554 22355677777777777777777744444
No 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=46.48 E-value=1.8e+02 Score=26.89 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 007087 265 VEKLTQTVRELEEAVLAG 282 (618)
Q Consensus 265 VEKLsqTv~ELEEavLAg 282 (618)
|.||..+|..||+-+.+.
T Consensus 100 v~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999888765
No 55
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.80 E-value=1e+02 Score=26.44 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhH
Q 007087 263 AEVEKLTQTVRELEEAVLAGGAAA 286 (618)
Q Consensus 263 aEVEKLsqTv~ELEEavLAggAaA 286 (618)
.||++|...+.+ +.+.|++|
T Consensus 59 ~e~~~l~~~~ee----lq~~~~~~ 78 (81)
T 1wt6_A 59 AHVRQLQERMEL----LQAEGATA 78 (81)
T ss_dssp HHHHHHHHHHHH----HHC-----
T ss_pred HHHHHHHHHHHH----HHccchhh
Confidence 445555555554 34666654
No 56
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=45.72 E-value=63 Score=29.11 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=20.3
Q ss_pred HHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 007087 223 ALAKASMVDDLQNKNQELMKQIEICQE 249 (618)
Q Consensus 223 AlakA~~V~dlQNkN~EL~kQiEIcqE 249 (618)
-..|-+.|.-||+++-||++||-+...
T Consensus 64 l~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 64 LTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888876543
No 57
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=44.33 E-value=1.4e+02 Score=25.00 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=8.4
Q ss_pred hhhhhHHHHHHHHHHH
Q 007087 233 LQNKNQELMKQIEICQ 248 (618)
Q Consensus 233 lQNkN~EL~kQiEIcq 248 (618)
|+.+++-|..+++.++
T Consensus 49 L~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555444
No 58
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.38 E-value=24 Score=29.31 Aligned_cols=17 Identities=35% Similarity=0.687 Sum_probs=10.0
Q ss_pred ccchhhHHHH-----hhhhHHH
Q 007087 335 VMPVKQWLEE-----RRFLQGE 351 (618)
Q Consensus 335 VmPVKqWLEE-----rRflQGE 351 (618)
+|.||.-|+- |++|-||
T Consensus 61 LlnvK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 61 LLDIKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHcCC
Confidence 3666666653 5566665
No 59
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.36 E-value=36 Score=28.46 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhH
Q 007087 107 EKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDE 144 (618)
Q Consensus 107 dKAveel~~el~kldEKLk~tE~lle~knLEiKklndE 144 (618)
..++.+..+||+..|+.+...|..|..|.-+|+.|..+
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777778888888999999999999888888665
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.17 E-value=2.6e+02 Score=27.82 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHHH-HHHHHhhhccCCCCChhHH-hhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 007087 150 AAQFAAEA-TLRRVHAAQKDDDMPPIEA-ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA 227 (618)
Q Consensus 150 AAQfAAEA-tLRRvHa~QKDddmppiea-iiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA 227 (618)
..+|.+|- +|.+||.-- .+|+-. ..+|-+ ++...+.+...++...++|+..+-.-..++.+.+..++.+....
T Consensus 323 ~~eF~~Eve~L~~i~HrN----LV~L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
T 3oja_A 323 SETERLECERENQARQRE----IDALKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397 (487)
T ss_dssp --CHHHHHHHHHHHHHHH----HHHHHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcccccc----hhhHHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchh
Confidence 34666663 456655432 333333 344444 45555555558888888998888887878878887777775544
Q ss_pred h
Q 007087 228 S 228 (618)
Q Consensus 228 ~ 228 (618)
-
T Consensus 398 e 398 (487)
T 3oja_A 398 E 398 (487)
T ss_dssp C
T ss_pred h
Confidence 3
No 61
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.76 E-value=87 Score=33.31 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCCc-hhHhhhhhhHHHhhhhHHHHHHHHHHHHHH
Q 007087 67 GSDP-VKVELNRLENEVRDKDRELGEAQAEIKALR 100 (618)
Q Consensus 67 gsdP-v~~ElnRLeN~lr~KdrEL~~A~aEIkaLr 100 (618)
|.|+ ++.++..|..+.|....++...+++..++-
T Consensus 26 ~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~s 60 (485)
T 3qne_A 26 GDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60 (485)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 467777777777777666666666655543
No 62
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.48 E-value=1.8e+02 Score=27.15 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007087 80 NEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAEN 129 (618)
Q Consensus 80 N~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~ 129 (618)
+.++....|+.....+|+.|...-..|.|+++.+.+|+.-+.=.+...|.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666777777777776655544444433
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.40 E-value=1.5e+02 Score=24.32 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh
Q 007087 108 KAVEELTEELSKVEEKLKLAENLIETKNLEIK 139 (618)
Q Consensus 108 KAveel~~el~kldEKLk~tE~lle~knLEiK 139 (618)
..+.....++..+..++..++..+...+-+++
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 64
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.85 E-value=2.1e+02 Score=25.67 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=46.3
Q ss_pred HhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHH
Q 007087 73 VELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQ 152 (618)
Q Consensus 73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQ 152 (618)
+|++-|...|...+.-|..-+.+|..|+..-+.++++++. +.-|.....+-..=.+.---.-.+++.|| ..|..|
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~----I~vLkaQv~IY~~DF~aERadREkl~~eK-e~L~~q 98 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----VPVLKAQADIYKADFQAERHAREKLVEKK-EYLQEQ 98 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchhhHHHHHhHH-HHHHHH
Confidence 4666677777777777777777777777666666665532 33333333333333333333445666664 478888
Q ss_pred HHHH
Q 007087 153 FAAE 156 (618)
Q Consensus 153 fAAE 156 (618)
++..
T Consensus 99 l~~L 102 (110)
T 2v4h_A 99 LEQL 102 (110)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 65
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.60 E-value=2e+02 Score=25.04 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHH
Q 007087 108 KAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE 156 (618)
Q Consensus 108 KAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAE 156 (618)
.-+..+.+++.++.++|.-.+.......-...++..||- .|..|+.+|
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~-~L~~qL~~E 60 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKN-DLQLQVQAE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334455666666666666666555554445555655554 566666555
No 66
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=38.15 E-value=2.4e+02 Score=26.62 Aligned_cols=42 Identities=7% Similarity=0.072 Sum_probs=24.1
Q ss_pred HHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007087 88 ELGEAQAEI-KALRLSERLREKAVEELTEELSKVEEKLKLAEN 129 (618)
Q Consensus 88 EL~~A~aEI-kaLr~se~~kdKAveel~~el~kldEKLk~tE~ 129 (618)
.+.+.++++ .+||.+...-.+....+..++..++......+.
T Consensus 35 ~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~ 77 (174)
T 2p22_A 35 KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNA 77 (174)
T ss_dssp HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 566777777 677766655555555555555554444444433
No 67
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.48 E-value=1.7e+02 Score=24.87 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=34.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhhHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDR 308 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAg-gAaANAVRdyqrq~~eLneEk~tLer 308 (618)
+..||++|.-|.++|..... +--.+++.+...|..||..+-.. ..-+--+++|| +|..-|-.|+-
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~----------~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq----~LlnvKl~Le~ 79 (95)
T 3mov_A 14 YFQGQKESRACLERIQELED----------LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE----QLLDVKLALDM 79 (95)
T ss_dssp ----CCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45666666666666655443 22335566666666666666533 22222345553 45555555665
Q ss_pred HHh
Q 007087 309 ELA 311 (618)
Q Consensus 309 ELA 311 (618)
|+|
T Consensus 80 EIa 82 (95)
T 3mov_A 80 EIS 82 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 68
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=37.22 E-value=69 Score=29.16 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=30.8
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 007087 173 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 248 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcq 248 (618)
|-+...+|+|++|.....++.+|. +.--.|++|||+.-+|.++|.-.+
T Consensus 41 ~ke~~~~~~qsele~k~aeLe~le----------------------------eL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 41 AKEGFRAPLQSKLDAKKAKLSKLE----------------------------ELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp ------CHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH----------------------------HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444556889999888887877771 122357888888888888887433
No 69
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.20 E-value=2.1e+02 Score=24.84 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=49.8
Q ss_pred CCCChhHHhhhccHHHHHHHHHHHHHhhhchH----HHHHHHhhHHHHHHHHHHHHHHHHHHh-hhhHHhhhhhHHHHHH
Q 007087 169 DDMPPIEAILAPLEAELKLARQEIAKLQDDNK----ALDRLTKSKEAALLEAERTVQVALAKA-SMVDDLQNKNQELMKQ 243 (618)
Q Consensus 169 ddmppieaiiApLeAelk~~r~Ei~kLqddnk----ALerltKsKEaALleaeR~v~~AlakA-~~V~dlQNkN~EL~kQ 243 (618)
.+-|.+++.|..|...|...-.+-+.|+-.+. +++.+-..=|..+ .....++..+... ..||+.-=...+|..|
T Consensus 13 ~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 13 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-LQREEAENTLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 34566677777777777666666555543332 2222211111111 1111122222221 1234444445678888
Q ss_pred HHHHHHHhHHHHHHhhhHHHH
Q 007087 244 IEICQEENKILDKMHRQKVAE 264 (618)
Q Consensus 244 iEIcqEEnkiLdk~hRQKvaE 264 (618)
|+-.++|-.+|.++|-+-|.|
T Consensus 92 iesL~eEl~FLKk~heeEl~e 112 (119)
T 3ol1_A 92 VESLQEEIAFLKKLHEEEIQE 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998774443
No 70
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.16 E-value=1.3e+02 Score=22.58 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=27.2
Q ss_pred CchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007087 69 DPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSK 119 (618)
Q Consensus 69 dPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~k 119 (618)
.|+...++.|+..+.+.......-.+++..++..-..-..-|+..++++.+
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777888777776665555555555554444333333333333333333
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=36.84 E-value=2.8e+02 Score=26.24 Aligned_cols=93 Identities=20% Similarity=0.301 Sum_probs=52.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhh
Q 007087 99 LRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAIL 178 (618)
Q Consensus 99 Lr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaii 178 (618)
||-+..-=.+++..+...++-|.+++...++.-.....++ ..|-||+-.|-.-|. |..+ -.--++.-|
T Consensus 32 lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~--------~~LQa~L~qEr~~r~-q~se---~~~elq~ri 99 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY--------YQLQAILEAERRDRG-HDSE---MIGDLQARI 99 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-HHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-HHHH---HHHHHHHHH
Confidence 3433333344555555555556666655555444333332 245556655544443 2222 112345578
Q ss_pred hccHHHHHHHHHHHHHhhhchHHHH
Q 007087 179 APLEAELKLARQEIAKLQDDNKALD 203 (618)
Q Consensus 179 ApLeAelk~~r~Ei~kLqddnkALe 203 (618)
..|+.||+..+.-..++..+++.|-
T Consensus 100 ~~L~~El~~~k~~~~k~~~e~r~L~ 124 (168)
T 3o0z_A 100 TSLQEEVKHLKHNLEKVEGERKEAQ 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988888888888763
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.72 E-value=4.1e+02 Score=28.13 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHH--HHHHHHHHHHHHHHHH
Q 007087 239 ELMKQIEICQEENKILDKMHRQKVAE--VEKLTQTVRELEEAVL 280 (618)
Q Consensus 239 EL~kQiEIcqEEnkiLdk~hRQKvaE--VEKLsqTv~ELEEavL 280 (618)
+|.+||++.++ +|-+.+.+.++++ |+.+.-.|..||-+|-
T Consensus 117 eLe~~i~~lk~--~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 117 DLRSRIEILRR--KVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566665554 2334444444443 5677778888888885
No 73
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=36.66 E-value=1.3e+02 Score=30.77 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHH
Q 007087 110 VEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRR 161 (618)
Q Consensus 110 veel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRR 161 (618)
+++|+..+..+-|.-..+...+++.+.+|++|.----.-++||-|.+- |+.
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~r-L~e 55 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQ-LSE 55 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH-HHH
Confidence 678888888999999999999999999999998877778888877764 655
No 74
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=36.31 E-value=2.1e+02 Score=24.75 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=42.2
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007087 199 NKALDRLTKSKEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEE 277 (618)
Q Consensus 199 nkALerltKsKEaALleaeR~v~~AlakA~-~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEE 277 (618)
--++.||.|-+..--.|+.. ..++-. |-.+ ..-..+|++|.++++|-...|-.+++. |...+..|++
T Consensus 13 t~~vkRL~KE~~~Y~kE~~~----q~~riek~k~e-~~Dey~iKkq~evl~Et~~mipd~~~R-------l~~a~~~L~~ 80 (108)
T 1h7c_A 13 TGVVRRLVKERVMYEKEAKQ----QEEKIEKMRAE-DGENYDIKKQAEILQESRMMIPDCQRR-------LEAAYLDLQR 80 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HCSCTHHHHHHHHHHHHHTTHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHH
Confidence 35777887765544444331 111111 2222 223689999999999999999888765 5555555555
Q ss_pred HHH
Q 007087 278 AVL 280 (618)
Q Consensus 278 avL 280 (618)
.|.
T Consensus 81 ~l~ 83 (108)
T 1h7c_A 81 ILE 83 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 75
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.64 E-value=24 Score=37.64 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=27.4
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhH--HHHHHhhhHH
Q 007087 228 SMVDDLQNKNQELMKQIEICQEENK--ILDKMHRQKV 262 (618)
Q Consensus 228 ~~V~dlQNkN~EL~kQiEIcqEEnk--iLdk~hRQKv 262 (618)
..-+-||.++.+|...|+....|+| -+|++|..-|
T Consensus 511 ekn~~lq~qL~~L~~el~~~r~~~k~t~~D~lh~en~ 547 (575)
T 2i1j_A 511 ERNERLHNQLKALKQDLARSCDETKETAMDKIHRENV 547 (575)
T ss_dssp HHCHHHHHHHHHHHHHHHTTBCGGGCCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHhh
Confidence 3345789999999999988888888 7888887643
No 76
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=35.41 E-value=75 Score=26.90 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHH
Q 007087 111 EELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQ 190 (618)
Q Consensus 111 eel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~ 190 (618)
++-..-++.++..|.-.+.+|++|.+|+.-+.---| +++.+-|+.||.
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R--------------------------------~~~~~klr~Yk~ 92 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFR--------------------------------NPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH--------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--------------------------------HHHHHHHHHHHH
Confidence 344455667777778888899999998876632212 256777888888
Q ss_pred HHHHhhhc
Q 007087 191 EIAKLQDD 198 (618)
Q Consensus 191 Ei~kLqdd 198 (618)
++.+|+.+
T Consensus 93 dL~~lk~e 100 (102)
T 2qyw_A 93 DLAKLHRE 100 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88887654
No 77
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.12 E-value=1.7e+02 Score=23.98 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 007087 289 VRDYQRKVQEMNEERKTLDR 308 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLer 308 (618)
+..|+.++.++..+...|..
T Consensus 66 i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333
No 78
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=34.97 E-value=2.2e+02 Score=24.62 Aligned_cols=69 Identities=26% Similarity=0.324 Sum_probs=42.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHh-hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 200 KALDRLTKSKEAALLEAERTVQVALAKA-SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 200 kALerltKsKEaALleaeR~v~~AlakA-~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
-++.||.|-+..---|+.. ..++- .|..|=-|...+|++|.++++|-.+.+-.+++ +|...+..|++.
T Consensus 11 g~vkRL~KE~~~Y~kE~~~----q~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~-------Rl~~a~~~L~~~ 79 (106)
T 1qsd_A 11 KALKRLTKEEGYYQQELKD----QEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYE-------KIREFKEDLEQF 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHH
Confidence 4666777655444333321 11111 12222125689999999999999999988876 466666666666
Q ss_pred H
Q 007087 279 V 279 (618)
Q Consensus 279 v 279 (618)
|
T Consensus 80 l 80 (106)
T 1qsd_A 80 L 80 (106)
T ss_dssp H
T ss_pred H
Confidence 6
No 79
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.49 E-value=1.9e+02 Score=23.65 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhh
Q 007087 286 ANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV 323 (618)
Q Consensus 286 ANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~v 323 (618)
.|.+..|+.+++.+...+..|+.++.....+.+-+-.+
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l 49 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999999999999888877755444
No 80
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=34.25 E-value=1.3e+02 Score=25.14 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhh--hhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHH
Q 007087 112 ELTEELSKVEEKLKLAENLIETKNLEIKKI--NDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLAR 189 (618)
Q Consensus 112 el~~el~kldEKLk~tE~lle~knLEiKkl--ndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r 189 (618)
+-..-++.++..+.-.+.+|++|.+|+.-+ ..-=| +++-+-|+.||
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R--------------------------------~~~~~klr~Yk 78 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASER--------------------------------ATYKAKLREWK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--------------------------------HHHHHHHHHHH
Confidence 334456667777777888999999988765 32222 35667777888
Q ss_pred HHHHH-hhhchHH
Q 007087 190 QEIAK-LQDDNKA 201 (618)
Q Consensus 190 ~Ei~k-LqddnkA 201 (618)
.++.+ |+.+.+-
T Consensus 79 ~dl~~~lk~~lk~ 91 (97)
T 3onj_A 79 KTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 88777 7665543
No 81
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.71 E-value=2.2e+02 Score=24.37 Aligned_cols=48 Identities=31% Similarity=0.481 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHhhhhhhhhhhhhhH
Q 007087 90 GEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAE-------NLIETKNLEIKKINDE 144 (618)
Q Consensus 90 ~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE-------~lle~knLEiKklndE 144 (618)
..-..||+-||.- |+++.+|--.-+-||++|- .+|+.++-||+.|.++
T Consensus 22 E~L~qEi~~Lr~k-------v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 22 EELLQELRHLKIK-------VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3566778877764 4566666666666666663 4555666666666554
No 82
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.67 E-value=2.1e+02 Score=30.40 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=18.9
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKAL 99 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaL 99 (618)
.+.++..|.++.|....++...+++..++
T Consensus 68 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~ 96 (501)
T 1wle_A 68 DLPGIISTWQELRQLREQIRSLEEEKEAV 96 (501)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777766666666555443
No 83
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=33.58 E-value=1.9e+02 Score=26.07 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=34.5
Q ss_pred hcCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHhHHHhhhhhhhhhh
Q 007087 65 LHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELS----KVEEKLKLAENLIETKNLEIKK 140 (618)
Q Consensus 65 ~hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~----kldEKLk~tE~lle~knLEiKk 140 (618)
...+||+..||.||.-+-- .. .+.-|..|-...-|...|+. |-|.+|.-.|.....+..+|..
T Consensus 31 ~~~sDPL~~ELeRLr~~~d-----~~--------~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~ 97 (115)
T 3vem_A 31 PVFNDPFLHELEKLRRESE-----NS--------KKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEK 97 (115)
T ss_dssp --CCSHHHHHHHHHHHHHH-----HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHH-----HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999864321 11 12222223333333444443 4566677677766666666555
Q ss_pred h
Q 007087 141 I 141 (618)
Q Consensus 141 l 141 (618)
+
T Consensus 98 ~ 98 (115)
T 3vem_A 98 D 98 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.92 E-value=1.9e+02 Score=30.74 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=28.0
Q ss_pred cCCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007087 66 HGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELT 114 (618)
Q Consensus 66 hgsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~ 114 (618)
+-.++|.-.|.-|++.|..-..--.++..=|+.|+.+-.-+++-+.+..
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~ 141 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDND 141 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchh
Confidence 4455666667767666665555444555556666666555555444333
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.81 E-value=1.4e+02 Score=24.42 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 007087 215 EAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 215 eaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E 274 (618)
.|+|..+ .-|..-+.+|+.+..+|....+..+.||..| |+ +|..|+.++.+
T Consensus 18 ~AQRafR--eRK~~~i~~LE~~v~~le~~~~~l~~en~~L----r~---~i~~L~~El~~ 68 (70)
T 1gd2_E 18 AAQRAFR--KRKEDHLKALETQVVTLKELHSSTTLENDQL----RQ---KVRQLEEELRI 68 (70)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TT---HHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHH
Confidence 5777776 4567778888888888888777777788777 43 34555555443
No 86
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=31.43 E-value=76 Score=33.98 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=38.7
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVE 111 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAve 111 (618)
-.-+|.-.|+.|++.|.+-..-=.+|+.=|+.|+.+-.-+++-+.
T Consensus 89 ye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~ 133 (461)
T 3ghg_B 89 QERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVK 133 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCC
Confidence 355799999999999999999999999999999999887765554
No 87
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.97 E-value=69 Score=27.07 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHH
Q 007087 114 TEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIA 193 (618)
Q Consensus 114 ~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~ 193 (618)
..-++.++..|.-.+.+|++|.+|+.-+.- ++=+++.+-|+.||.++.
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~--------------------------------~~R~~~~~klr~Yk~dL~ 84 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPP--------------------------------QSRGMYSNRMRSYKQEMG 84 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT--------------------------------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------------------------------HhHHHHHHHHHHHHHHHH
Confidence 444566677777788899999888766532 112366777888888888
Q ss_pred HhhhchH
Q 007087 194 KLQDDNK 200 (618)
Q Consensus 194 kLqddnk 200 (618)
+|+.+.+
T Consensus 85 ~lk~elk 91 (102)
T 1vcs_A 85 KLETDFK 91 (102)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 8776654
No 88
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.74 E-value=34 Score=24.84 Aligned_cols=20 Identities=40% Similarity=0.760 Sum_probs=12.7
Q ss_pred HHHhHHHHHhHHHHHHhhcc
Q 007087 561 KKMRREVAAMEKEVAAMRVE 580 (618)
Q Consensus 561 KKmrREvaa~EKEvaa~r~~ 580 (618)
--++.|+|++.||+++++.+
T Consensus 5 aalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777766543
No 89
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.60 E-value=2.5e+02 Score=23.77 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=42.6
Q ss_pred hhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHH
Q 007087 75 LNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFA 154 (618)
Q Consensus 75 lnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfA 154 (618)
+.-|+..|+.-..+=..+..|++.|-.....=+..|..+..+...++..-...=...-...+++-...+|.. ++-+||.
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~-Sl~~q~~ 84 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK-SVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345555555555555566666666666555556666666666665554332222222233344444555555 6666664
No 90
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=30.27 E-value=3.3e+02 Score=25.16 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=39.7
Q ss_pred hhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 007087 75 LNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 146 (618)
Q Consensus 75 lnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK 146 (618)
+..||++|++- +|-.--+..|..| +..+|..-.+|+...|.-+....-+++-+.+--|
T Consensus 2 ~~~lE~qlkea--------ae~ad~KyeEvaR------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlK 59 (155)
T 2efr_A 2 MKQLEDKVEEL--------LSKNYHLENEVAR------LKKLLERAEERAELSEGKSAELEEELKTVTNNLK 59 (155)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677777755 3444455555555 8888999999998888887766666666655555
No 91
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.04 E-value=2.6e+02 Score=23.79 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 215 EAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 215 eaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
..|..|+.|+..- .-||-.+.||+.+-..|..++.-+..-+-..+.|+++|.++..-..+-
T Consensus 10 qLE~KIq~avdtI---~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 10 KLEAKVQQAIDTI---TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556555532 223334444444444444444444333334455556666655544443
No 92
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=29.98 E-value=2.4e+02 Score=23.36 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=28.1
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKAL 99 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaL 99 (618)
.-+-+-.||.|.-.++|++|....++..+|..+
T Consensus 12 ~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~ 44 (104)
T 4afl_A 12 SIENLPFELQRNFQLMRDLDQRTEDLKAEIDKL 44 (104)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999988653
No 93
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.66 E-value=72 Score=26.17 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007087 264 EVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 312 (618)
Q Consensus 264 EVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLerELAR 312 (618)
+|++|.+.|.+|++.+-..+--+ .|| .+++++..+...++.+|..
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~---~d~-~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFS---QPH-EQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGG---SCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccc---CCH-HHHHHHHHHHHHHHHHHHH
Confidence 35666666666666654433211 233 3566777777777777643
No 94
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.65 E-value=1.9e+02 Score=23.66 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHH
Q 007087 105 LREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEK 145 (618)
Q Consensus 105 ~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEK 145 (618)
.++.|+..|......++..++.++..++...-+++.+...=
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999988888888777766543
No 95
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.65 E-value=2.8e+02 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh
Q 007087 289 VRDYQRKVQEMNEERKTLDRELA 311 (618)
Q Consensus 289 VRdyqrq~~eLneEk~tLerELA 311 (618)
|.+-++....+......|..+|.
T Consensus 71 Va~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 71 VADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44446666666666667776664
No 96
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.53 E-value=55 Score=30.67 Aligned_cols=39 Identities=36% Similarity=0.439 Sum_probs=33.7
Q ss_pred HHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH
Q 007087 223 ALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQK 261 (618)
Q Consensus 223 AlakA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQK 261 (618)
|..|-.+|.||++-...+.+++|..|+|-.|.-||-|--
T Consensus 6 aE~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EE 44 (167)
T 4gkw_A 6 VEDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREE 44 (167)
T ss_dssp -CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999999998753
No 97
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.65 E-value=1.5e+02 Score=30.87 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=19.4
Q ss_pred hhHhhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007087 71 VKVELNRLENEVRDKDRELGEAQAEIKAL 99 (618)
Q Consensus 71 v~~ElnRLeN~lr~KdrEL~~A~aEIkaL 99 (618)
++.++..|.++.|....++...+++...+
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~ 57 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKI 57 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777766666665544
No 98
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.56 E-value=2.7e+02 Score=23.26 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 007087 289 VRDYQRKVQEMNE 301 (618)
Q Consensus 289 VRdyqrq~~eLne 301 (618)
|-.+.|+++-|.+
T Consensus 88 vasLnRriqllEE 100 (101)
T 3u59_A 88 VASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 4455555555443
No 99
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.07 E-value=1.1e+02 Score=26.00 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=28.8
Q ss_pred cchhHHHHHHHHhHhhhhhHHHH---HHHHHhHHHHHhHHHHH
Q 007087 536 KDKDDAIEILAKKVDTLTKAMEV---EAKKMRREVAAMEKEVA 575 (618)
Q Consensus 536 kdKddaIeML~KKVdtLtKamEV---EaKKmrREvaa~EKEva 575 (618)
++.|+|++.|-+|++.|++.++. ...+++..+..++.++.
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999987754 44455555555555543
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.06 E-value=6.7e+02 Score=27.68 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhh---hh-HHHHHHHHHHHHHhHHHHHHh
Q 007087 183 AELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQN---KN-QELMKQIEICQEENKILDKMH 258 (618)
Q Consensus 183 Aelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~~V~dlQN---kN-~EL~kQiEIcqEEnkiLdk~h 258 (618)
.-|...|++++.++...+-.+.+++.+--.|-.-. ..+ .|..| +. .||.++|+..+++-. ..+.
T Consensus 64 krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq-------~q~---~dNdNtynE~S~ELRRrIqyLKekVd--nQls 131 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDF-------SSA---NNRDNTYNRVSEDLRSRIEVLKRKVI--EKVQ 131 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHH-------HHH---HHHHHHHHHTTHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH-------Hhh---hccchhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33444555666666666666666655443332211 111 12222 22 277777777766533 1223
Q ss_pred hhHHHH--HHHHHHHHHHHHHHHHhc-----hhhH--HH----HHHHHHHH
Q 007087 259 RQKVAE--VEKLTQTVRELEEAVLAG-----GAAA--NA----VRDYQRKV 296 (618)
Q Consensus 259 RQKvaE--VEKLsqTv~ELEEavLAg-----gAaA--NA----VRdyqrq~ 296 (618)
+.++++ |+.+-..|..||-+|.+- |.-+ .+ +.+|..+-
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~Q 182 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQ 182 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHH
Confidence 334433 778888899999998753 3222 22 78886543
No 101
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.47 E-value=1.4e+02 Score=30.68 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCchhHhhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhHHHh
Q 007087 67 GSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLRE-KAVEELTEELSKVEEKLKLAENLI 131 (618)
Q Consensus 67 gsdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kd-KAveel~~el~kldEKLk~tE~ll 131 (618)
|.|+-+.++..|.++.|....++...+++..++--....+. .-.++|..+++.+.++++.+|..+
T Consensus 22 ~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 22 GVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433677777888888777777777777665543221111 123445555555555555444433
No 102
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=26.33 E-value=3e+02 Score=23.33 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=25.7
Q ss_pred hhhccHHHHHHHHH-------HHHHh-hhchHHHHHHHhhHHHHHHHHH
Q 007087 177 ILAPLEAELKLARQ-------EIAKL-QDDNKALDRLTKSKEAALLEAE 217 (618)
Q Consensus 177 iiApLeAelk~~r~-------Ei~kL-qddnkALerltKsKEaALleae 217 (618)
++.-|+.++..+.. |-..| .-|..+|+.++..|+..+...+
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~ 56 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLE 56 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554 33333 2356789999999998877544
No 103
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=26.31 E-value=98 Score=25.10 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=41.2
Q ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 007087 225 AKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 274 (618)
Q Consensus 225 akA~~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~E 274 (618)
-.|+-..|..++.+...+|+.+-- +.+|..++-+.-.||-||-..+++
T Consensus 6 KLasFLkDFD~ev~~~~~~~~~~~--~~llk~i~~~y~~eiiklp~~ir~ 53 (62)
T 2qfa_B 6 KLASFLKDFDREVEIRIKQIESDR--QNLLKEVDNLYNIEILRLPKALRE 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 357888999999999999998533 678888999999999999998876
No 104
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.07 E-value=4.3e+02 Score=25.13 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhHHH----HHHHHHHH
Q 007087 231 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANA----VRDYQRKV 296 (618)
Q Consensus 231 ~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAg-gAaANA----VRdyqrq~ 296 (618)
..+|.+|..|..+.+. |.....+-...+|++..+-.++|..+++- =..-|. +|.+|+++
T Consensus 135 ~~~~~~~~~L~~e~~~-------l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 135 AENQAKNEHLQKENER-------LLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555444433 33333344577788888888888888876 455566 66666444
No 105
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.55 E-value=1.6e+02 Score=28.38 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=15.6
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHH
Q 007087 178 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 220 (618)
Q Consensus 178 iApLeAelk~~r~Ei~kLqddnkALerltKsKEaALleaeR~v 220 (618)
=..+|..|..+...|++||-.|..|-.-+..|+..+-..++.|
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql 50 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQI 50 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554444444333333
No 106
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=25.30 E-value=3.1e+02 Score=23.17 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007087 90 GEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAEN 129 (618)
Q Consensus 90 ~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~ 129 (618)
..+.+++..|+..++---..+.+|..+-..++.-+...+.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~ 46 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQA 46 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444333444444444444443333333
No 107
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.28 E-value=1.8e+02 Score=22.32 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007087 262 VAEVEKLTQTVRELEEAVLA 281 (618)
Q Consensus 262 vaEVEKLsqTv~ELEEavLA 281 (618)
-.+|..|..++..|...|+|
T Consensus 42 ~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 42 QSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45566666666666666654
No 108
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.60 E-value=46 Score=31.06 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=6.4
Q ss_pred hhhhhhhhhhHHH
Q 007087 134 KNLEIKKINDEKR 146 (618)
Q Consensus 134 knLEiKklndEKK 146 (618)
.+.|.+||..+++
T Consensus 99 LeAE~aKLeEekQ 111 (146)
T 2xnx_M 99 LTIEKAKLEEEKQ 111 (146)
T ss_dssp HHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555554
No 109
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.52 E-value=2.8e+02 Score=22.36 Aligned_cols=76 Identities=11% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhhhhhhhcccccCCCCcc-------------chhhHHHHhh-hhHHH
Q 007087 286 ANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVM-------------PVKQWLEERR-FLQGE 351 (618)
Q Consensus 286 ANAVRdyqrq~~eLneEk~tLerELARaKv~ANRVA~vvAnEWKD~ndkVm-------------PVKqWLEErR-flQGE 351 (618)
.|.+..++.+++.+...+..|+.++.....+.+-+..+ |++.+|. -|...|++|. ++..+
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l------~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~ 80 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA------ADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHhhh
Q 007087 352 MQQLRDRLAITERTAK 367 (618)
Q Consensus 352 mqrLrdKLAiaERtAk 367 (618)
|..|..++.-.+....
T Consensus 81 i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 110
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.09 E-value=1.4e+02 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=15.4
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHH
Q 007087 173 PIEAILAPLEAELKLARQEIAKLQDDNKALD 203 (618)
Q Consensus 173 pieaiiApLeAelk~~r~Ei~kLqddnkALe 203 (618)
|-.......+.++...+.||++|.+-+++|+
T Consensus 65 Pa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 65 PTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333333455555555555555555554443
No 111
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.48 E-value=3.1e+02 Score=29.16 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=21.5
Q ss_pred CCCc-hhHhhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007087 67 GSDP-VKVELNRLENEVRDKDRELGEAQAEIKAL 99 (618)
Q Consensus 67 gsdP-v~~ElnRLeN~lr~KdrEL~~A~aEIkaL 99 (618)
|.|+ ++.++..|..+.|....++...+++...+
T Consensus 30 ~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~ 63 (484)
T 3lss_A 30 FADPDIVDAIIEADKKWRRTQFLTEASKKLINIC 63 (484)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 46777777777777666666666655544
No 112
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=23.16 E-value=2.5e+02 Score=25.93 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=21.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007087 100 RLSERLREKAVEELTEELSKVEEKLKLAE 128 (618)
Q Consensus 100 r~se~~kdKAveel~~el~kldEKLk~tE 128 (618)
++|+..|+++..++...+..+|--|.-+|
T Consensus 21 iVTe~~Ke~l~~~l~~~i~q~d~elqQLe 49 (150)
T 4dci_A 21 VVTPTWKEEAEREISNGIANADQQLAQLE 49 (150)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999887776665444433
No 113
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.14 E-value=3.2e+02 Score=22.62 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=21.8
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 007087 229 MVDDLQNKNQELMKQIEICQEENKILDKMH 258 (618)
Q Consensus 229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~h 258 (618)
.||++-=.-.+|..|||..++|-.+|-|.|
T Consensus 57 dvD~a~l~r~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 57 DVDNASLARLDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345555555788888888888888887665
No 114
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.04 E-value=77 Score=25.17 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.3
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHH
Q 007087 172 PPIEAILAPLEAELKLARQEIAKLQDDNKALDR 204 (618)
Q Consensus 172 ppieaiiApLeAelk~~r~Ei~kLqddnkALer 204 (618)
.-++.|+|.||.+--....+|+.|..|+--|||
T Consensus 20 aklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 457889999998888888888888888887776
No 115
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.72 E-value=2.8e+02 Score=24.19 Aligned_cols=29 Identities=28% Similarity=0.514 Sum_probs=11.4
Q ss_pred chhHhhhhhhHHHhhhhHHHHHHHHHHHH
Q 007087 70 PVKVELNRLENEVRDKDRELGEAQAEIKA 98 (618)
Q Consensus 70 Pv~~ElnRLeN~lr~KdrEL~~A~aEIka 98 (618)
|+.-++++|.-+++.-..++.....|++.
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~ 30 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKR 30 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444444444444444444444444433
No 116
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=22.56 E-value=4.4e+02 Score=23.96 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=36.2
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhH-HHHHHhhhHHHHHHHHHHHHHHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENK-ILDKMHRQKVAEVEKLTQTVRELE 276 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnk-iLdk~hRQKvaEVEKLsqTv~ELE 276 (618)
.++||..-.||-..|..+.+|.= +=.++.+| .-||.-|.+.|.+|.
T Consensus 60 ~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq-~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTKN-ITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHc-chHHHHHHHHHHHHH
Confidence 47888889999999999998865 55555555 559999999988874
No 117
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.52 E-value=1.8e+02 Score=24.02 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=16.1
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHH
Q 007087 230 VDDLQNKNQELMKQIEICQEENKIL 254 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiL 254 (618)
+..||.+++.|..+++..+.+|..|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L 78 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655
No 118
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.32 E-value=3.5e+02 Score=22.87 Aligned_cols=45 Identities=13% Similarity=0.328 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhchhhHHH-HHHHHHHHHHHHHHHhhHHHHH
Q 007087 266 EKLTQTVRELEEAVLAGGAAANA-VRDYQRKVQEMNEERKTLDREL 310 (618)
Q Consensus 266 EKLsqTv~ELEEavLAggAaANA-VRdyqrq~~eLneEk~tLerEL 310 (618)
+-|..|+.+|+++|.....-..+ |..=++.+.++..+...|..++
T Consensus 46 ~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 46 KDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999874322111 4444555666666666665555
No 119
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.92 E-value=1.9e+02 Score=22.90 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 007087 207 KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 248 (618)
Q Consensus 207 KsKEaALleaeR~v~~AlakA~~V~dlQNkN~EL~kQiEIcq 248 (618)
++.++|--.=+|..+-....-.-|+.|.+.|.+|..+|+...
T Consensus 16 rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 16 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665555555666677777777766655443
No 120
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.01 E-value=5.8e+02 Score=28.16 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 007087 287 NAVRDYQRKVQEMNEE 302 (618)
Q Consensus 287 NAVRdyqrq~~eLneE 302 (618)
|.|++-..+++.|+--
T Consensus 138 snLedq~~kIQRLEvD 153 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444445444433
Done!