Query 007087
Match_columns 618
No_of_seqs 50 out of 52
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 16:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007087.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007087hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 75.7 9.4 0.00068 30.5 9.7 85 230-318 3-119 (133)
2 d2fupa1 a.47.5.1 (A:1-130) Hyp 52.3 42 0.0031 26.2 9.2 47 171-217 1-55 (130)
3 d1k4ta1 a.2.8.1 (A:641-712) Eu 46.2 31 0.0023 27.0 7.1 26 76-101 5-30 (72)
4 d1vcsa1 a.47.2.1 (A:8-96) Vesi 44.0 14 0.00099 29.1 4.7 55 114-200 30-84 (89)
5 d1h7ca_ a.7.5.1 (A:) Tubulin c 37.7 95 0.0069 24.9 10.4 41 236-283 43-83 (103)
6 d1seta1 a.2.7.1 (A:1-110) Sery 37.5 61 0.0044 25.0 7.8 32 68-99 23-54 (110)
7 d2ap3a1 a.24.27.1 (A:12-196) H 35.1 47 0.0035 24.3 6.4 74 74-147 110-183 (185)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 34.1 60 0.0044 25.2 7.2 71 74-144 16-101 (107)
9 d1qvra2 c.37.1.20 (A:149-535) 31.6 1.2E+02 0.0087 28.4 10.2 12 314-325 372-383 (387)
10 d2efla1 a.238.1.4 (A:1-288) Fo 24.9 1.7E+02 0.012 23.9 16.1 18 292-309 205-222 (288)
11 d1fxka_ a.2.5.1 (A:) Prefoldin 22.7 1.6E+02 0.011 22.6 9.5 81 191-272 9-102 (107)
12 d1dd5a_ d.67.3.1 (A:) Ribosome 20.3 43 0.0031 28.9 4.2 34 182-215 149-183 (184)
13 d1qsda_ a.7.5.1 (A:) Tubulin c 20.0 2E+02 0.015 22.9 9.1 70 200-280 8-78 (102)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=75.68 E-value=9.4 Score=30.47 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=65.7
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------ch-------------------
Q 007087 230 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA-------GG------------------- 283 (618)
Q Consensus 230 V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLA-------gg------------------- 283 (618)
+++|..+.+.|..+|+.++.+-.-| ...+.|.+.+..++..|.+..-. +|
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l----~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~ 78 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAV----RATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecC
Confidence 4678888888888899888888877 78889999999999888753100 01
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 007087 284 ------AAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 318 (618)
Q Consensus 284 ------AaANAVRdyqrq~~eLneEk~tLerELARaKv~AN 318 (618)
....|+..|.+++.+++.....|..++...+....
T Consensus 79 g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~ 119 (133)
T d1fxkc_ 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12268999999999999999999998877665554
No 2
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=52.28 E-value=42 Score=26.24 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=31.5
Q ss_pred CChhHHhhhccHHHHHHHHHHHHH--------hhhchHHHHHHHhhHHHHHHHHH
Q 007087 171 MPPIEAILAPLEAELKLARQEIAK--------LQDDNKALDRLTKSKEAALLEAE 217 (618)
Q Consensus 171 mppieaiiApLeAelk~~r~Ei~k--------LqddnkALerltKsKEaALleae 217 (618)
||-....+.-|..|+..|+.=..- .+-|..+|+.++..|...+...+
T Consensus 1 m~d~~~L~~~L~~e~~~~~~L~~LL~~e~~aL~~~d~~~Le~l~~~k~~ll~~l~ 55 (130)
T d2fupa1 1 MPDSPTLLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLE 55 (130)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 454555566666777666643322 24577889999999998887665
No 3
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.21 E-value=31 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.9
Q ss_pred hhhhHHHhhhhHHHHHHHHHHHHHHh
Q 007087 76 NRLENEVRDKDRELGEAQAEIKALRL 101 (618)
Q Consensus 76 nRLeN~lr~KdrEL~~A~aEIkaLr~ 101 (618)
..|+.-+..|-..+.+|+.|++.++.
T Consensus 5 enLq~KI~~Kk~qi~~a~~e~K~ak~ 30 (72)
T d1k4ta1 5 MNLQTKIDAKKEQLADARRDLKSAKA 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999884
No 4
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.03 E-value=14 Score=29.12 Aligned_cols=55 Identities=31% Similarity=0.518 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHH
Q 007087 114 TEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIA 193 (618)
Q Consensus 114 ~~el~kldEKLk~tE~lle~knLEiKklndEKK~alAAQfAAEAtLRRvHa~QKDddmppieaiiApLeAelk~~r~Ei~ 193 (618)
..-++.++..+.-.+.+|++|.||+.-+ || ++=+++-+-|+.||.++.
T Consensus 30 k~~l~~ie~~leEA~ell~qMelEvr~~------------------------------p~--s~R~~~~~klr~Yk~dl~ 77 (89)
T d1vcsa1 30 KQMVANVEKQLEEARELLEQMDLEVREI------------------------------PP--QSRGMYSNRMRSYKQEMG 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------------------CT--TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhC------------------------------CH--HHHHHHHHHHHHHHHHHH
Confidence 3445667777777888999999987654 33 234567778888888888
Q ss_pred HhhhchH
Q 007087 194 KLQDDNK 200 (618)
Q Consensus 194 kLqddnk 200 (618)
+|+.+.+
T Consensus 78 ~lk~elk 84 (89)
T d1vcsa1 78 KLETDFK 84 (89)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 8877654
No 5
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.66 E-value=95 Score=24.89 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Q 007087 236 KNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGG 283 (618)
Q Consensus 236 kN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAgg 283 (618)
--.++++|+++++|-...+-.+++ +|...+.+|++.+...+
T Consensus 43 dey~iKkq~~vl~Es~~mipd~~~-------Rl~~a~~~L~~~l~~e~ 83 (103)
T d1h7ca_ 43 ENYDIKKQAEILQESRMMIPDCQR-------RLEAAYLDLQRILENEK 83 (103)
T ss_dssp SCTHHHHHHHHHHHHHTTHHHHHH-------HHHHHHHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHCC
Confidence 467999999999999998887775 56777777777665433
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=37.53 E-value=61 Score=25.05 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=18.7
Q ss_pred CCchhHhhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007087 68 SDPVKVELNRLENEVRDKDRELGEAQAEIKAL 99 (618)
Q Consensus 68 sdPv~~ElnRLeN~lr~KdrEL~~A~aEIkaL 99 (618)
.|+-..++..|..+.|+...++...+++...+
T Consensus 23 ~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~ 54 (110)
T d1seta1 23 VALDLEALLALDREVQELKKRLQEVQTERNQV 54 (110)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334566666666666666666666655443
No 7
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=35.10 E-value=47 Score=24.34 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhhHHHH
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRA 147 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~se~~kdKAveel~~el~kldEKLk~tE~lle~knLEiKklndEKK~ 147 (618)
.+..+...+......+.....++..+..........+.++...+..++..+.-++..++..+-.++.++.+|.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~~ 183 (185)
T d2ap3a1 110 VLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQD 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.07 E-value=60 Score=25.18 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=50.1
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q 007087 74 ELNRLENEVRDKDRELGEAQAEIKALRLS---------------ERLREKAVEELTEELSKVEEKLKLAENLIETKNLEI 138 (618)
Q Consensus 74 ElnRLeN~lr~KdrEL~~A~aEIkaLr~s---------------e~~kdKAveel~~el~kldEKLk~tE~lle~knLEi 138 (618)
++..+...+...+.++.++..=++.|... +..++.++..|...+.-++..++..+..++.+.-++
T Consensus 16 el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l 95 (107)
T d1fxka_ 16 QAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666655555555532 256888999999999999999999999988888877
Q ss_pred hhhhhH
Q 007087 139 KKINDE 144 (618)
Q Consensus 139 KklndE 144 (618)
..+...
T Consensus 96 ~~~~~~ 101 (107)
T d1fxka_ 96 QEMQVN 101 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 9
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=31.63 E-value=1.2e+02 Score=28.40 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=7.7
Q ss_pred hhhhhhhhhhhh
Q 007087 314 KVTANRVATVVA 325 (618)
Q Consensus 314 Kv~ANRVA~vvA 325 (618)
.|+.+=||-||+
T Consensus 372 ~VteedIA~VVS 383 (387)
T d1qvra2 372 EVTEEDIAEIVS 383 (387)
T ss_dssp EECHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 366667777764
No 10
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.93 E-value=1.7e+02 Score=23.88 Aligned_cols=18 Identities=6% Similarity=0.386 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 007087 292 YQRKVQEMNEERKTLDRE 309 (618)
Q Consensus 292 yqrq~~eLneEk~tLerE 309 (618)
|...+..+......++.+
T Consensus 205 ~~~~~~~~~~~~q~~e~~ 222 (288)
T d2efla1 205 YHTHIPNIFQKIQEMEER 222 (288)
T ss_dssp HHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 11
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.71 E-value=1.6e+02 Score=22.63 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=47.8
Q ss_pred HHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-------------hhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 007087 191 EIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS-------------MVDDLQNKNQELMKQIEICQEENKILDKM 257 (618)
Q Consensus 191 Ei~kLqddnkALerltKsKEaALleaeR~v~~AlakA~-------------~V~dlQNkN~EL~kQiEIcqEEnkiLdk~ 257 (618)
.+..+|.+...+..-...-++.+.|++.++.. |...- +-.|+.-=..+|.++++.+..+-+-|++-
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e-L~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q 87 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEE-LSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666667777777766544 33211 12455556677778888888777776655
Q ss_pred hhhHHHHHHHHHHHH
Q 007087 258 HRQKVAEVEKLTQTV 272 (618)
Q Consensus 258 hRQKvaEVEKLsqTv 272 (618)
-.....+.+++...+
T Consensus 88 ~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 88 EERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 12
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=20.30 E-value=43 Score=28.92 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhc-hHHHHHHHhhHHHHHHH
Q 007087 182 EAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 215 (618)
Q Consensus 182 eAelk~~r~Ei~kLqdd-nkALerltKsKEaALle 215 (618)
|-+++.+..+|+++.|+ ++-+|.+++.||+.|++
T Consensus 149 eD~~k~~~~~iq~ltd~~~~~id~~~~~Kekeim~ 183 (184)
T d1dd5a_ 149 EDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67889999999999987 57799999999999874
No 13
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Probab=20.03 E-value=2e+02 Score=22.91 Aligned_cols=70 Identities=26% Similarity=0.298 Sum_probs=43.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh-HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007087 200 KALDRLTKSKEAALLEAERTVQVALAKASMV-DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA 278 (618)
Q Consensus 200 kALerltKsKEaALleaeR~v~~AlakA~~V-~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEa 278 (618)
-++-||+|-+..---|+. ..-++-... .|-.+-.+++++|+++.+|-.+.+-.+++ +|+..+.+|++.
T Consensus 8 g~vkRL~KE~~~Y~kE~~----~q~~kv~k~kad~~~dey~iKkq~evL~Es~~mipd~~~-------RL~~a~~~L~~~ 76 (102)
T d1qsda_ 8 KALKRLTKEEGYYQQELK----DQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYE-------KIREFKEDLEQF 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHH
Confidence 356677765443333332 222222222 13234579999999999999999988875 466667777666
Q ss_pred HH
Q 007087 279 VL 280 (618)
Q Consensus 279 vL 280 (618)
+-
T Consensus 77 l~ 78 (102)
T d1qsda_ 77 LK 78 (102)
T ss_dssp HH
T ss_pred HH
Confidence 64
Done!