BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007089
(618 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 169/668 (25%), Positives = 267/668 (39%), Gaps = 140/668 (20%)
Query: 13 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVSDC---DSVGVLYNTQHYTRTPEEXXXXXXXXXXHTE---GAVRGGL 186
+ +W +G+++SD D+ + P + E A++ G
Sbjct: 228 VLREEWGFEGFVMSDWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGK 287
Query: 187 LREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLL 246
L EE ++ + + V + PS + + D+ G+VLL
Sbjct: 288 LSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHAKVAYEAGAEGVVLL 339
Query: 247 KNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP------LQGISR---- 296
+N LPLS + +A+ G T+ G G T P L+GI
Sbjct: 340 RNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRYAISILEGIKERGLN 391
Query: 297 -----------YAKTIHQAGCFGVACNG----------NQLIGAAEV--AARQADATVLV 333
Y K + + + + + E+ A++ D V+V
Sbjct: 392 FDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVIV 451
Query: 334 MGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVLVLM-CGGPVDVSFA 386
+ I E DR L + +L+ V++ +G V+VL+ G PV+V
Sbjct: 452 IS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSW 508
Query: 387 KNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAA 446
++ + IL V GQ G +ADVL GR NP GKLP T +P+DY S +P +
Sbjct: 509 RD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDVP--------S 556
Query: 447 RGYPGRT----------------YRFYKGPVVFP---FGHGMSYTTFAHTLSKAPNQFSV 487
+PG YR+Y V P FG+G+SYTTF
Sbjct: 557 WTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE------------ 604
Query: 488 PIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN 547
Y+ N + +RV + I+NTG AG V+ K P G
Sbjct: 605 ------YSDLNVSFDGETLRVQYR-------------IENTGGRAGKEVSQVYIKAPKGK 645
Query: 548 W-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKH 605
P ++L F K + G + V L+I V S + + + GE+ + +G
Sbjct: 646 IDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGEYEVRVGASSR 703
Query: 606 SISLQANL 613
+I L+
Sbjct: 704 NIKLKGTF 711
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 170/678 (25%), Positives = 265/678 (39%), Gaps = 160/678 (23%)
Query: 13 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVS----------------DCDSVGVLYNTQHYTRTPEEXXXXXXXXXX 176
+ +W +G+++S D G Y R E
Sbjct: 228 VLREEWGFEGFVMSAWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIME------ 281
Query: 177 HTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXX 236
A++ G L EE ++ + + V + PS + + D+
Sbjct: 282 ----ALKEGKLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHAKVAY 329
Query: 237 XXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP------ 290
G+VLL+N LPLS + +A+ G T+ G G T P
Sbjct: 330 EAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRYAISI 381
Query: 291 LQGISR---------------YAKTIHQAGCFGVACNG----------NQLIGAAEV--A 323
L+GI Y K + + + + + E+
Sbjct: 382 LEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKL 441
Query: 324 ARQADATVLVMGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVLVLM- 376
A++ D V+V+ I E DR L + +L+ V++ +G V+VL+
Sbjct: 442 AKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498
Query: 377 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRL 436
G PV+V ++ + IL V GQ G +ADVL GR NP GKLP T +P+DY S +
Sbjct: 499 IGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDV 554
Query: 437 PMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTTFAHT 477
P + +PG YR+Y V P FG+G+SYTTF
Sbjct: 555 P--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE-- 604
Query: 478 LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL 537
Y+ N + +RV + I+NTG AG
Sbjct: 605 ----------------YSDLNVSFDGETLRVQYR-------------IENTGGRAGKEVS 635
Query: 538 LVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 595
V+ K P G P ++L F K + G + V L+I V S + + + GE
Sbjct: 636 QVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGE 693
Query: 596 HSLHIGDLKHSISLQANL 613
+ + +G +I L+
Sbjct: 694 YEVRVGASSRNIKLKGTF 711
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 168/648 (25%), Positives = 257/648 (39%), Gaps = 108/648 (16%)
Query: 20 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 79
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 120 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 170
Query: 80 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 139
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 171 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 229
Query: 140 LDGYIVSDCDSVGVLYNTQHYTRTPEEXXXXXXXXXXHTEGAVR--GGLL---------- 187
GY+++D +N QH T G R G L
Sbjct: 230 FPGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVP 282
Query: 188 --REEDV--NLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGI 243
R +D+ + A+ +T Q + G S GN GI
Sbjct: 283 TSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNVQGN----------HKTNVRAIARDGI 332
Query: 244 VLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVACG- 286
VLLKN A LPL + ++AV+G + +IGN+A G+ G
Sbjct: 333 VLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWGS 385
Query: 287 -------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ- 338
+ P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 386 GAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADSG 441
Query: 339 ----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGA 394
++E DR L LV VA A+ V++V+ G + + P++ A
Sbjct: 442 EGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKA 500
Query: 395 ILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYPGR 452
++W G P Q G A+ DVL+G +P GKL T P DY +R+ ++ + G
Sbjct: 501 VVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRI-VSGGSDSFSEGL-FI 558
Query: 453 TYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIATSLYAFKNTTISSNAIRV 508
Y+ + + P FG+G+SYT F ++ LS S P ++ + + N V
Sbjct: 559 DYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVATV 618
Query: 509 AHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSPNKQLIGFKKVHVTAGAL 567
VDI N+G + G L P + +P KQL GF K+++T G
Sbjct: 619 T-------------VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQS 665
Query: 568 QSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISLQANLE 614
+ +I + LS D + +P G + +G I L + L
Sbjct: 666 GTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRLTSTLS 712
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 168/648 (25%), Positives = 257/648 (39%), Gaps = 108/648 (16%)
Query: 20 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 79
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 119 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 169
Query: 80 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 139
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 170 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 228
Query: 140 LDGYIVSDCDSVGVLYNTQHYTRTPEEXXXXXXXXXXHTEGAVR--GGLL---------- 187
GY+++D +N QH T G R G L
Sbjct: 229 FPGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVP 281
Query: 188 --REEDV--NLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGI 243
R +D+ + A+ +T Q + G S GN GI
Sbjct: 282 TSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNVQGN----------HKTNVRAIARDGI 331
Query: 244 VLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVACG- 286
VLLKN A LPL + ++AV+G + +IGN+A G+ G
Sbjct: 332 VLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWGS 384
Query: 287 -------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ- 338
+ P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 385 GAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADSG 440
Query: 339 ----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGA 394
++E DR L LV VA A+ V++V+ G + + P++ A
Sbjct: 441 EGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKA 499
Query: 395 ILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYPGR 452
++W G P Q G A+ DVL+G +P GKL T P DY +R+ ++ + G
Sbjct: 500 VVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRI-VSGGSDSFSEGL-FI 557
Query: 453 TYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIATSLYAFKNTTISSNAIRV 508
Y+ + + P FG+G+SYT F ++ LS S P ++ + + N V
Sbjct: 558 DYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVATV 617
Query: 509 AHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSPNKQLIGFKKVHVTAGAL 567
VDI N+G + G L P + +P KQL GF K+++T G
Sbjct: 618 T-------------VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQS 664
Query: 568 QSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISLQANLE 614
+ +I + LS D + +P G + +G I L + L
Sbjct: 665 GTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRLTSTLS 711
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 146/309 (47%), Gaps = 47/309 (15%)
Query: 303 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 362
QAG + ++ AAE+AA+ D VL++GL+ E E DR + LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 363 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 422
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 423 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 475
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 476 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 534
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 535 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 592
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 593 MGEHSLHIG 601
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P N+ R P GRG E+ EDP L G +S V+G+QG +AA KH+ DL++
Sbjct: 101 PTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEG-----IAATVKHFVCNDLED 155
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
R+ N+ VS++ L + Y PF+ V +M +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDI 211
Query: 134 IHGQWRLDGYIVSD 147
+ +W+ DG ++SD
Sbjct: 212 LRDEWKWDGMLMSD 225
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 47/309 (15%)
Query: 303 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 362
QAG + ++ AAE+AA+ D VL++GL+ E E DR LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRA 609
Query: 363 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 422
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 423 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 475
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 476 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 534
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 535 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 592
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 593 MGEHSLHIG 601
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P N R P GRG E+ EDP L G +S V+G QG +AA KH+ DL++
Sbjct: 101 PTTNXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQGEG-----IAATVKHFVCNDLED 155
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
R+ N+ VS++ L + Y PF+ V + +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDI 211
Query: 134 IHGQWRLDGYIVSD 147
+ +W+ DG + SD
Sbjct: 212 LRDEWKWDGXLXSD 225
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 130/488 (26%), Positives = 194/488 (39%), Gaps = 75/488 (15%)
Query: 12 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 65
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 66 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 125
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 126 DPDILKNTIHGQWRLDGYIVSD---------CD----------SVGVLYNTQHYTRTPEE 166
D +L + + Q DG++VSD CD V V+ +H+
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCDLEQCAQAINAGVDVIMVPEHFE----- 327
Query: 167 XXXXXXXXXXHTEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSAQPFGNLGPRD 225
+T V+ G++ E +N A+ + ++R G+F +PSA+P P+
Sbjct: 328 ------AFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQW 380
Query: 226 VCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVAC 285
+ +VLLKN+ LP+ VA G N+ I AG
Sbjct: 381 LGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA------INMQAG--- 431
Query: 286 GYTTPLQGISRYAKTIHQA-----GCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 340
G++ QG A G I +E + V ++ + +
Sbjct: 432 GWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGEEP 491
Query: 341 EAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSFAKNDPRIGAI 395
AE+ LL Q E +A KA PVV V + G P+ V+ N
Sbjct: 492 YAEWFGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVA 549
Query: 396 LWVGYPGQAGGAAIADVLF------GRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAAR 447
W+ PG + G +ADVL + + GKL +W Y + L D A
Sbjct: 550 AWL--PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADYDPLFAY 606
Query: 448 GYPGRTYR 455
GY G TY+
Sbjct: 607 GY-GLTYQ 613
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 130/488 (26%), Positives = 194/488 (39%), Gaps = 75/488 (15%)
Query: 12 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 65
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 66 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 125
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 126 DPDILKNTIHGQWRLDGYIVSD---------CD----------SVGVLYNTQHYTRTPEE 166
D +L + + Q DG++VSD CD V V+ +H+
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCDLEQCAQAINAGVDVIMVPEHFE----- 327
Query: 167 XXXXXXXXXXHTEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSAQPFGNLGPRD 225
+T V+ G++ E +N A+ + ++R G+F +PSA+P P+
Sbjct: 328 ------AFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQW 380
Query: 226 VCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVAC 285
+ +VLLKN+ LP+ VA G N+ I AG
Sbjct: 381 LGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA------INMQAG--- 431
Query: 286 GYTTPLQGISRYAKTIHQA-----GCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 340
G++ QG A G I +E + V ++ + +
Sbjct: 432 GWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGEEP 491
Query: 341 EAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSFAKNDPRIGAI 395
AE+ LL Q E +A KA PVV V + G P+ V+ N
Sbjct: 492 YAEWFGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVA 549
Query: 396 LWVGYPGQAGGAAIADVLF------GRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAAR 447
W+ PG + G +ADVL + + GKL +W Y + L D A
Sbjct: 550 AWL--PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADYDPLFAY 606
Query: 448 GYPGRTYR 455
GY G TY+
Sbjct: 607 GY-GLTYQ 613
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 129/297 (43%), Gaps = 29/297 (9%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P +N R P GR ET EDP+++ + A + ++G+QG + KH+ A + +N
Sbjct: 151 PMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQG-----AGLMTTAKHFAANNQEN 205
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
+R+ NA V +Q L + F+A G AS MC+YN +NGKP+C + ++L N
Sbjct: 206 ----NRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGLNGKPSCGNDELLNNV 260
Query: 134 IHGQWRLDGYIVSD------CDSVGVLYNTQHYTRTP-----EEXXXXXXXXXXHTEGAV 182
+ QW G+++SD D++ + + P E + AV
Sbjct: 261 LRTQWGFQGWVMSDWLATPGTDAITKGLDQEMGVELPGDVPKGEPSPPAKFFGEALKTAV 320
Query: 183 RGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXG 242
G + E V + + + G+ P+ +P RD G
Sbjct: 321 LNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRP-----ERDKA--GAQAVSRKVAENG 373
Query: 243 IVLLKNSARTLPLSTLRHHTVAVIGPNS-DVTVTMIGNYAGVACGYTTPLQGISRYA 298
VLL+N + LPL+ ++AVIGP + D VT +G+ V PL I A
Sbjct: 374 AVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDSAAAPLDTIKARA 430
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 123/273 (45%), Gaps = 68/273 (24%)
Query: 323 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 382
+AR+A T +V D E +DR L LPG Q +L+S VA A+ +V VL G V
Sbjct: 562 SARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPNTIV-VLNTGSSVL 617
Query: 383 VSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYP----QDYVSRLPM 438
+ + + A+L + YPGQAG A A +L+G NP GKL + +P Q V+ P
Sbjct: 618 MPWLS---KTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAAENQHAVAGDPT 673
Query: 439 TDMRMRAARGYPG----RTYR---------FYKGPV--VFPFGHGMSYTTFAHTLSKAPN 483
+ YPG +TYR F K V +FPFGHG+SYT+F +
Sbjct: 674 S---------YPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQS------ 718
Query: 484 QFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVF--A 541
A V T+ L + V ++N+G AG + + A
Sbjct: 719 ---------------------APTVVRTSTG---GLKVTVTVRNSGKRAGQEVVQAYLGA 754
Query: 542 KPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDI 574
P K+L+G+ KV + AG ++V +++
Sbjct: 755 SPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNV 787
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 116/492 (23%), Positives = 189/492 (38%), Gaps = 111/492 (22%)
Query: 8 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 55
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 56 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 115
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 116 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVL---------YNTQ-------H 159
+ NG A+ D++ + + G+++SD + + + Y+ +
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLD 313
Query: 160 YTRTPEEXXXXXXXXXXHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEPS-A 215
P + H V GG++ ++ A+ + V+ +G+F+ +P+ A
Sbjct: 314 MIMVPNKYQQFISILTGH----VNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMA 369
Query: 216 QPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN-----SARTLPLSTLRHHTVAVIGPNS 270
+ G RD+ +VLLKN A LPL + + V G ++
Sbjct: 370 EQLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPLPK-KAPKILVAGSHA 420
Query: 271 DVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADAT 330
D G CG TI G G G ++ A + A +
Sbjct: 421 D--------NLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVV 461
Query: 331 VLVMGLDQSIEAEFIDRAG----------------------LLLPGRQQELVSRVAKASR 368
V ++ +AEF+ G L +P V V R
Sbjct: 462 VFA----ENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVR 517
Query: 369 GPVVLVLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMT 426
VL+ G PV V A +D + A L PG G + D LFG G+LP T
Sbjct: 518 --CATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRT 570
Query: 427 WYPQDYVSRLPM 438
W+ V +LPM
Sbjct: 571 WFKS--VDQLPM 580
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 116/492 (23%), Positives = 189/492 (38%), Gaps = 111/492 (22%)
Query: 8 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 55
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 56 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 115
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 116 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVL---------YNTQ-------H 159
+ NG A+ D++ + + G+++SD + + + Y+ +
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLD 313
Query: 160 YTRTPEEXXXXXXXXXXHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEPS-A 215
P + H V GG++ ++ A+ + V+ +G+F+ +P+ A
Sbjct: 314 MIMVPNKYQQFISILTGH----VNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMA 369
Query: 216 QPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN-----SARTLPLSTLRHHTVAVIGPNS 270
+ G RD+ +VLLKN A LPL + + V G ++
Sbjct: 370 EQLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPLPK-KAPKILVAGSHA 420
Query: 271 DVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADAT 330
D G CG TI G G G ++ A + A +
Sbjct: 421 D--------NLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVV 461
Query: 331 VLVMGLDQSIEAEFIDRAG----------------------LLLPGRQQELVSRVAKASR 368
V ++ +AEF+ G L +P V V R
Sbjct: 462 VFA----ENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVR 517
Query: 369 GPVVLVLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMT 426
VL+ G PV V A +D + A L PG G + D LFG G+LP T
Sbjct: 518 --CATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRT 570
Query: 427 WYPQDYVSRLPM 438
W+ V +LPM
Sbjct: 571 WFKS--VDQLPM 580
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 48 GLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQ--DLEDTYNVPFKACVVE 105
L G+T R VA C KH+ + + D + RVSK +L+ PF+A + E
Sbjct: 164 ALAGHT--REGVAPCAKHFPGHGDTHQ---DSHLALPRVSKSRAELDAGELAPFRALLPE 218
Query: 106 G-KVASVMCSYNQVNGK-PTCADPDILKNTIHGQWRLDGYIVSDC 148
+ + Y+ ++ + P P IL + +W DG IV+D
Sbjct: 219 TPAIXTAHIVYDALDAEHPATLSPRILTGLLREEWGYDGVIVTDS 263
>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
Resolution
Length = 366
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 589 RRIPMGEHSLHIGDLKHSISLQANL 613
RRI +GE SL +GD HS S + ++
Sbjct: 94 RRIAVGEGSLSVGDFSHSFSFEGSV 118
>pdb|3P11|A Chain A, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 522
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 47 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 103
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 104 VEGKVASVMCS 114
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 181 AVRGGLLREEDVNLALAYTITVQMRLGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXX 238
AV+ G + E+ +N ++ I+++++ GM+ S + + V +
Sbjct: 375 AVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKL 434
Query: 239 XXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTM 276
+ +LKN TLP + + ++ P + T ++
Sbjct: 435 AEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASI 472
>pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracellular Domain
pdb|1M6B|B Chain B, Structure Of The Her3 (Erbb3) Extracellular Domain
Length = 621
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 47 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 103
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 104 VEGKVASVMCS 114
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 181 AVRGGLLREEDVNLALAYTITVQMRLGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXX 238
AV+ G + E+ +N ++ I+++++ GM+ S + + V +
Sbjct: 345 AVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKL 404
Query: 239 XXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTM 276
+ +LKN TLP + + ++ P + T ++
Sbjct: 405 AEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASI 442
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 181 AVRGGLLREEDVNLALAYTITVQMRLGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXX 238
AV+ G + E+ +N ++ I+++++ GM+ S + + V +
Sbjct: 371 AVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKL 430
Query: 239 XXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTM 276
+ +LKN TLP + + ++ P + T ++
Sbjct: 431 AEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASI 468
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,261,662
Number of Sequences: 62578
Number of extensions: 820838
Number of successful extensions: 1517
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 33
length of query: 618
length of database: 14,973,337
effective HSP length: 105
effective length of query: 513
effective length of database: 8,402,647
effective search space: 4310557911
effective search space used: 4310557911
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)