Query 007089
Match_columns 618
No_of_seqs 319 out of 1866
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 1E-140 3E-145 1208.9 58.9 607 2-611 144-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 3E-128 7E-133 1110.6 56.7 560 8-608 150-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 3.2E-52 7E-57 444.9 20.9 244 8-281 113-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 1.8E-46 3.8E-51 390.8 15.2 183 7-202 101-299 (299)
5 PF01915 Glyco_hydro_3_C: Glyc 100.0 3.9E-40 8.5E-45 330.3 14.1 217 243-473 1-227 (227)
6 PRK05337 beta-hexosaminidase; 100.0 3E-38 6.6E-43 331.3 17.0 176 8-206 114-309 (337)
7 PF14310 Fn3-like: Fibronectin 99.8 9.4E-21 2E-25 154.4 6.8 69 535-604 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.4 0.011 2.4E-07 50.6 6.9 61 518-601 20-82 (101)
9 PF12690 BsuPI: Intracellular 95.3 0.11 2.4E-06 43.4 8.3 67 519-599 2-81 (82)
10 PF10633 NPCBM_assoc: NPCBM-as 94.5 0.19 4.2E-06 41.3 7.7 65 518-600 6-73 (78)
11 COG0486 ThdF Predicted GTPase 92.7 2.7 5.9E-05 46.0 14.5 102 102-206 60-171 (454)
12 PF14874 PapD-like: Flagellar- 90.2 2.4 5.1E-05 36.5 9.1 61 518-584 21-81 (102)
13 PRK13203 ureB urease subunit b 89.1 0.68 1.5E-05 39.8 4.6 51 519-573 20-82 (102)
14 cd00407 Urease_beta Urease bet 89.0 0.74 1.6E-05 39.5 4.7 51 519-573 20-82 (101)
15 PRK13202 ureB urease subunit b 86.5 1.4 3.1E-05 37.9 5.0 51 519-573 21-83 (104)
16 PRK13201 ureB urease subunit b 85.7 1.4 3E-05 39.7 4.7 51 519-573 20-82 (136)
17 TIGR00192 urease_beta urease, 85.1 1.9 4.1E-05 37.1 5.0 51 519-573 20-82 (101)
18 PF13473 Cupredoxin_1: Cupredo 84.6 1.9 4.2E-05 37.4 5.2 51 520-602 44-94 (104)
19 PF07610 DUF1573: Protein of u 84.2 1.6 3.5E-05 31.9 3.8 43 522-573 1-44 (45)
20 PF00699 Urease_beta: Urease b 84.2 1.6 3.4E-05 37.5 4.2 52 518-573 18-81 (100)
21 PRK13205 ureB urease subunit b 83.9 1.8 3.8E-05 39.9 4.6 51 519-573 20-82 (162)
22 PRK13204 ureB urease subunit b 80.0 3.3 7.2E-05 38.2 4.9 51 519-573 43-105 (159)
23 TIGR02695 azurin azurin. Azuri 79.7 4 8.6E-05 36.8 5.3 53 520-576 26-99 (125)
24 COG0832 UreB Urea amidohydrola 78.1 3.5 7.6E-05 35.3 4.2 52 518-573 19-82 (106)
25 PRK13198 ureB urease subunit b 78.1 4.1 8.9E-05 37.6 4.9 51 519-573 48-110 (158)
26 PF05506 DUF756: Domain of unk 76.3 10 0.00022 31.9 6.7 46 520-576 21-67 (89)
27 PF07385 DUF1498: Protein of u 75.1 4.8 0.0001 39.8 4.9 59 524-588 111-180 (225)
28 PF00345 PapD_N: Pili and flag 74.3 8.5 0.00018 34.3 6.1 54 520-576 17-73 (122)
29 PRK13192 bifunctional urease s 72.4 6 0.00013 38.4 4.7 51 519-573 129-191 (208)
30 PF06030 DUF916: Bacterial pro 72.0 13 0.00029 33.4 6.7 57 518-576 28-103 (121)
31 PF04744 Monooxygenase_B: Mono 71.5 8.4 0.00018 40.9 5.9 53 518-575 264-334 (381)
32 PRK13986 urease subunit alpha; 68.0 8.4 0.00018 37.9 4.7 51 519-573 125-187 (225)
33 COG1470 Predicted membrane pro 67.3 5.8 0.00013 43.3 3.8 73 518-604 285-360 (513)
34 PF06280 DUF1034: Fn3-like dom 66.3 41 0.00089 29.4 8.6 59 518-576 9-80 (112)
35 COG1470 Predicted membrane pro 66.1 30 0.00065 38.0 8.8 69 518-602 398-467 (513)
36 PF14796 AP3B1_C: Clathrin-ada 63.2 24 0.00051 32.8 6.5 54 518-576 86-140 (145)
37 PF00927 Transglut_C: Transglu 63.1 14 0.00031 32.0 4.9 58 518-576 16-76 (107)
38 PF14016 DUF4232: Protein of u 59.9 56 0.0012 29.5 8.4 57 518-576 19-82 (131)
39 PF09624 DUF2393: Protein of u 58.8 23 0.0005 32.8 5.8 59 518-576 63-133 (149)
40 TIGR01759 MalateDH-SF1 malate 55.4 11 0.00025 39.8 3.5 58 322-383 75-134 (323)
41 PRK13211 N-acetylglucosamine-b 55.1 38 0.00083 37.8 7.6 59 518-601 328-386 (478)
42 COG1160 Predicted GTPases [Gen 54.8 32 0.00069 37.8 6.7 47 318-377 75-121 (444)
43 PF07495 Y_Y_Y: Y_Y_Y domain; 52.4 19 0.00041 27.9 3.6 11 591-601 36-46 (66)
44 TIGR03096 nitroso_cyanin nitro 51.7 39 0.00085 31.0 5.8 26 561-602 95-120 (135)
45 TIGR00450 mnmE_trmE_thdF tRNA 51.4 1.7E+02 0.0036 32.5 11.9 102 102-206 50-161 (442)
46 PF06858 NOG1: Nucleolar GTP-b 49.8 55 0.0012 25.5 5.4 45 323-376 10-55 (58)
47 PF05753 TRAP_beta: Translocon 48.0 1.1E+02 0.0023 29.6 8.6 80 518-604 39-127 (181)
48 TIGR01756 LDH_protist lactate 47.7 15 0.00033 38.7 2.9 56 322-383 56-115 (313)
49 cd03708 GTPBP_III Domain III o 44.5 1.4E+02 0.003 24.5 7.8 76 518-601 5-82 (87)
50 PRK05442 malate dehydrogenase; 44.0 23 0.0005 37.6 3.7 56 322-383 76-135 (326)
51 cd00704 MDH Malate dehydrogena 44.0 22 0.00047 37.7 3.4 56 322-383 72-131 (323)
52 PLN00135 malate dehydrogenase 43.6 22 0.00049 37.4 3.4 58 322-383 54-113 (309)
53 cd00938 HisRS_RNA HisRS_RNA bi 43.1 91 0.002 22.9 5.4 32 177-208 12-43 (45)
54 PF06510 DUF1102: Protein of u 42.7 1.2E+02 0.0026 28.2 7.4 64 508-576 59-124 (146)
55 TIGR03079 CH4_NH3mon_ox_B meth 42.7 46 0.00099 35.5 5.4 54 518-576 283-354 (399)
56 cd01338 MDH_choloroplast_like 41.6 25 0.00054 37.2 3.4 56 322-383 74-133 (322)
57 cd01336 MDH_cytoplasmic_cytoso 40.2 26 0.00057 37.1 3.4 58 322-383 74-133 (325)
58 PF10087 DUF2325: Uncharacteri 39.7 83 0.0018 26.7 5.8 40 320-374 42-81 (97)
59 PRK05291 trmE tRNA modificatio 38.9 3.3E+02 0.0071 30.2 11.9 103 101-206 57-169 (449)
60 PF00056 Ldh_1_N: lactate/mala 37.8 11 0.00024 34.7 0.1 54 323-383 66-123 (141)
61 PF06205 GT36_AF: Glycosyltran 37.1 23 0.00051 30.0 1.9 26 549-576 59-84 (90)
62 COG0039 Mdh Malate/lactate deh 36.7 33 0.00072 36.1 3.4 58 322-384 65-124 (313)
63 COG1361 S-layer domain [Cell e 36.6 90 0.002 35.0 7.2 58 518-576 168-226 (500)
64 PRK09918 putative fimbrial cha 36.3 1.3E+02 0.0028 30.2 7.4 50 520-574 41-92 (230)
65 PF08530 PepX_C: X-Pro dipepti 36.2 90 0.0019 30.6 6.3 56 518-576 97-162 (218)
66 cd05290 LDH_3 A subgroup of L- 35.8 37 0.0008 35.7 3.6 57 322-383 64-124 (307)
67 TIGR01758 MDH_euk_cyt malate d 35.0 34 0.00074 36.2 3.2 56 322-383 71-130 (324)
68 PLN02303 urease 34.9 49 0.0011 39.3 4.7 51 519-573 150-212 (837)
69 TIGR01757 Malate-DH_plant mala 34.6 26 0.00057 38.1 2.3 56 322-383 116-175 (387)
70 PF09851 SHOCT: Short C-termin 32.4 90 0.002 20.8 3.8 25 176-200 6-30 (31)
71 PRK00286 xseA exodeoxyribonucl 32.1 1.8E+02 0.0039 32.1 8.5 57 315-383 179-237 (438)
72 PF07233 DUF1425: Protein of u 32.1 2.6E+02 0.0055 23.8 7.6 57 518-576 25-82 (94)
73 cd09030 DUF1425 Putative perip 31.9 3.3E+02 0.0071 23.3 8.8 53 518-576 33-90 (101)
74 PRK05086 malate dehydrogenase; 31.7 39 0.00085 35.6 3.0 56 322-383 65-123 (312)
75 PRK13556 azoreductase; Provisi 31.5 1.1E+02 0.0024 29.9 6.1 38 317-365 80-117 (208)
76 TIGR01451 B_ant_repeat conserv 31.2 65 0.0014 24.3 3.3 21 518-539 13-33 (53)
77 PRK15249 fimbrial chaperone pr 31.0 1E+02 0.0023 31.4 5.9 54 520-575 45-103 (253)
78 PF09912 DUF2141: Uncharacteri 30.9 79 0.0017 27.9 4.4 64 523-591 1-69 (112)
79 PRK13555 azoreductase; Provisi 30.7 1.1E+02 0.0023 30.2 5.8 38 317-365 80-117 (208)
80 PF01345 DUF11: Domain of unkn 30.5 59 0.0013 26.1 3.3 18 518-535 42-59 (76)
81 PF11906 DUF3426: Protein of u 30.2 1.8E+02 0.004 26.6 7.0 59 518-576 69-136 (149)
82 PF09544 DUF2381: Protein of u 30.2 3.7E+02 0.0081 28.0 9.8 57 518-576 203-260 (289)
83 PRK10378 inactive ferrous ion 29.9 1.4E+02 0.003 32.4 6.7 45 520-576 52-96 (375)
84 cd01857 HSR1_MMR1 HSR1/MMR1. 29.7 1.1E+02 0.0024 27.6 5.4 18 318-335 3-20 (141)
85 TIGR03352 VI_chp_3 type VI sec 29.6 1.1E+02 0.0025 28.3 5.4 25 552-576 80-104 (146)
86 PF02450 LCAT: Lecithin:choles 29.4 66 0.0014 35.0 4.4 60 357-416 107-174 (389)
87 COG4454 Uncharacterized copper 29.4 59 0.0013 30.5 3.3 17 560-576 116-132 (158)
88 PRK09926 putative chaperone pr 29.4 1.2E+02 0.0026 30.7 6.0 54 520-575 42-99 (246)
89 cd00300 LDH_like L-lactate deh 29.2 41 0.00088 35.2 2.6 57 322-383 62-120 (300)
90 PLN02602 lactate dehydrogenase 29.0 45 0.00097 35.8 2.9 54 323-383 102-159 (350)
91 cd01337 MDH_glyoxysomal_mitoch 28.3 52 0.0011 34.7 3.2 55 322-383 64-122 (310)
92 PLN00112 malate dehydrogenase 28.3 38 0.00082 37.5 2.3 57 322-384 172-232 (444)
93 PF11611 DUF4352: Domain of un 28.2 91 0.002 27.2 4.4 59 518-576 37-101 (123)
94 TIGR00237 xseA exodeoxyribonuc 27.9 2.6E+02 0.0056 30.9 8.7 57 316-384 174-233 (432)
95 TIGR01763 MalateDH_bact malate 27.5 48 0.001 34.7 2.8 54 324-384 67-124 (305)
96 TIGR01772 MDH_euk_gproteo mala 27.4 65 0.0014 34.0 3.8 55 322-383 63-121 (312)
97 PRK15188 fimbrial chaperone pr 26.3 2.2E+02 0.0048 28.6 7.1 54 520-576 44-98 (228)
98 PF00009 GTP_EFTU: Elongation 25.8 2.2E+02 0.0048 27.0 6.9 47 317-376 84-130 (188)
99 PRK15295 fimbrial assembly cha 25.6 2.3E+02 0.005 28.3 7.2 54 520-575 36-90 (226)
100 PF04314 DUF461: Protein of un 25.0 3.4E+02 0.0074 23.6 7.4 25 518-545 15-39 (110)
101 PRK15299 fimbrial chaperone pr 24.9 1.8E+02 0.0039 29.1 6.2 54 520-575 39-94 (227)
102 PTZ00325 malate dehydrogenase; 24.4 59 0.0013 34.4 2.8 57 321-383 71-130 (321)
103 TIGR01771 L-LDH-NAD L-lactate 24.2 55 0.0012 34.2 2.5 55 322-383 60-118 (299)
104 PRK15246 fimbrial assembly cha 24.1 2.1E+02 0.0045 28.9 6.5 54 520-575 27-84 (233)
105 cd05294 LDH-like_MDH_nadp A la 23.9 73 0.0016 33.4 3.4 56 323-383 69-126 (309)
106 PRK15224 pili assembly chapero 23.8 2.4E+02 0.0053 28.5 6.9 53 520-576 45-98 (237)
107 TIGR03566 FMN_reduc_MsuE FMN r 23.6 1.7E+02 0.0037 27.6 5.6 54 315-379 57-112 (174)
108 PF09373 PMBR: Pseudomurein-bi 23.4 1E+02 0.0022 20.9 2.8 26 184-209 2-27 (33)
109 COG1182 AcpD Acyl carrier prot 22.9 2.1E+02 0.0046 28.1 6.0 66 318-402 79-144 (202)
110 PRK00170 azoreductase; Reviewe 22.6 1.6E+02 0.0035 28.3 5.3 38 316-364 76-113 (201)
111 PF01926 MMR_HSR1: 50S ribosom 22.6 1.5E+02 0.0031 25.6 4.6 45 318-376 71-115 (116)
112 PF02102 Peptidase_M35: Deuter 22.4 29 0.00063 37.2 0.0 63 519-581 40-121 (359)
113 PF13653 GDPD_2: Glycerophosph 22.2 77 0.0017 21.2 2.0 17 98-115 12-28 (30)
114 cd05291 HicDH_like L-2-hydroxy 20.8 1E+02 0.0022 32.2 3.7 55 323-384 65-123 (306)
115 PF03808 Glyco_tran_WecB: Glyc 20.3 2.6E+02 0.0056 26.5 6.1 40 325-383 100-139 (172)
116 PF00703 Glyco_hydro_2: Glycos 20.3 3.4E+02 0.0074 22.5 6.4 63 518-585 19-81 (110)
117 PF13157 DUF3992: Protein of u 20.2 4.5E+02 0.0098 22.5 6.7 67 518-599 25-91 (92)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=1.4e-140 Score=1208.86 Aligned_cols=607 Identities=49% Similarity=0.952 Sum_probs=524.3
Q ss_pred CCCccccceEeCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHhcCC---------CCCCeEEEeecccccccCC
Q 007089 2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD 72 (618)
Q Consensus 2 ~~~~~~Gi~~laP~~di~r~p~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~~---------~~~~~v~a~~KHF~g~g~~ 72 (618)
|+.+.+|+++|+|++||+|||+|||++|||||||+|+++|+.|+|+|||+.+ .++.+|+||+||||||+++
T Consensus 144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e 223 (779)
T PLN03080 144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE 223 (779)
T ss_pred ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence 3444468888999999999999999999999999999999999999999842 1344699999999999998
Q ss_pred CCCCCCccccccccCHHHHHHhhcHHHHHHHHcCCCceEEecccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhh
Q 007089 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG 152 (618)
Q Consensus 73 ~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~ 152 (618)
.+.+.+|...++.+++++|+|+||+||+++|++|.+.+||||||++||+|||.|++||++ ||+||||+|+|||||++|.
T Consensus 224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~ 302 (779)
T PLN03080 224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA 302 (779)
T ss_pred ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence 766778888899999999999999999999999888899999999999999999999986 9999999999999999999
Q ss_pred hccccccccCCHHHHHHHHHHH----------HHHHHHHHHCCCCCHHHHHHHHhhhHHHHHHhCCCCCCCCCCCCCCCC
Q 007089 153 VLYNTQHYTRTPEEAAADAIKA----------AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG 222 (618)
Q Consensus 153 ~~~~~~~~~~~~~~a~~~al~a----------~~~l~~av~~G~i~~~~ld~av~RiL~~k~~lGl~~~~p~~~~~~~~~ 222 (618)
.+...|++..+.+++++.||+| .+.|.+||++|+|++++||+||+|||++|+++|+|+.+|...+|.+..
T Consensus 303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~ 382 (779)
T PLN03080 303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG 382 (779)
T ss_pred HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence 9988888877899999999998 467999999999999999999999999999999999444333444444
Q ss_pred CCCCCCHHHHHHHHHHHhhcceeccCCCCCCCCCCCCCcEEEEEccCCCccccccccccccCCCcCCHHHHHHhhh-hee
Q 007089 223 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTI 301 (618)
Q Consensus 223 ~~~~~~~~~~~la~~~A~esivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~-~~~ 301 (618)
...+++++|+++|+++|++|||||||++++|||++.+.++|+||||+|+....++|+|++.+++.++++++|+++. .+.
T Consensus 383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~ 462 (779)
T PLN03080 383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS 462 (779)
T ss_pred ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence 5678899999999999999999999999999998765579999999999988888889888888999999999875 467
Q ss_pred eeccccccccCCccchHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEcCcee
Q 007089 302 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV 381 (618)
Q Consensus 302 y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~g~P~ 381 (618)
|..||....+.+...+++|+++|++||++||++|.+...++|+.||.+|.||+.|.+||++|++++++|+|||+++|+|+
T Consensus 463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv 542 (779)
T PLN03080 463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV 542 (779)
T ss_pred eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence 88888655444456788999999999999999999998999999999999999999999999987777899999999999
Q ss_pred ecccccCCCCccEEEEccCCCcchhHHHHHHHcCCCCCCcccCcccCCccccCCCCCccccccc--cCCCCCCccccCCC
Q 007089 382 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKG 459 (618)
Q Consensus 382 ~l~~~~~~~~v~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~ 459 (618)
+|+|+.+.++++|||++|||||++|+|+||||||++|||||||+||||+++ +++|++|+++++ ..+|++++||||+.
T Consensus 543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~ 621 (779)
T PLN03080 543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTG 621 (779)
T ss_pred eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCC
Confidence 999987667899999999999999999999999999999999999999988 789998887764 35589999999999
Q ss_pred CcccccCcCCCCCCceecCCccCCCcccccccccccccccc-----cccccccccc-cCCCCCeeEEEEEEEEeCCCCCc
Q 007089 460 PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTT-----ISSNAIRVAH-TNCNDAMSLGLHVDIKNTGDMAG 533 (618)
Q Consensus 460 ~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~v~v~VtNtG~~~G 533 (618)
+|+||||||||||||+||+++++...++............. .....+++.+ ..|+.. .++|+|+|||||+++|
T Consensus 622 ~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~G 700 (779)
T PLN03080 622 DVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMDG 700 (779)
T ss_pred CcceeccCCCccceeEeccccccccccccccccccccccccccccccccccccccccccCCCc-eEEEEEEEEECCcccC
Confidence 99999999999999999998754311111000000000000 0000000100 112222 4899999999999999
Q ss_pred ceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceEEEEEeCCCCeEEEEE
Q 007089 534 THTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 611 (618)
Q Consensus 534 ~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~ 611 (618)
+||||||+++|.+. .+|.|||+||+||+|+|||+++|+|+|+.+++|++||++++|++|+|+|+|+||+++|++++++
T Consensus 701 ~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 701 SHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred cEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 99999999999875 8999999999999999999999999999658999999999999999999999999999998763
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=3.4e-128 Score=1110.61 Aligned_cols=560 Identities=31% Similarity=0.501 Sum_probs=481.4
Q ss_pred cceE-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHhcCCC-CCCeEEEeecccccccCCCCCCCCccccccc
Q 007089 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTG-SRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (618)
Q Consensus 8 Gi~~-laP~~di~r~p~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~~~-~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (618)
|||+ |+|++||.|||+|||++|||||||+++++|+.|+|+|||+++. +..||++|+|||||||... .+|...+++
T Consensus 150 Gin~~laPv~Dv~r~p~~gr~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~ 226 (765)
T PRK15098 150 GLNMTWAPMVDISRDPRWGRASEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVE---GGRDYNTVD 226 (765)
T ss_pred CCCEEeeCcccccCCCCccccccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcc---cCccCccCc
Confidence 9999 9999999999999999999999999999999999999998631 2337999999999999532 245555678
Q ss_pred cCHHHHHHhhcHHHHHHHHcCCCceEEecccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhhhccccccccCCHH
Q 007089 86 VSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE 165 (618)
Q Consensus 86 ~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~~~~~~~~~~~~~~ 165 (618)
+++++|+|+||+||+++|++| +.+||||||.+||+|||.|+++|+++||+||||+|+|||||++|..+.. |++..+..
T Consensus 227 ~~~~~l~e~~l~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ 304 (765)
T PRK15098 227 MSPQRMFNDYLPPYKAGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPE 304 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHH
Confidence 899999999999999999877 9999999999999999999999999999999999999999999998864 66667889
Q ss_pred HHHHHHHHH-----------HHHHHHHHHCCCCCHHHHHHHHhhhHHHHHHhCCCCCCCCCCCCC--C-CCCCCCCCHHH
Q 007089 166 EAAADAIKA-----------AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFG--N-LGPRDVCTPAH 231 (618)
Q Consensus 166 ~a~~~al~a-----------~~~l~~av~~G~i~~~~ld~av~RiL~~k~~lGl~~~~p~~~~~~--~-~~~~~~~~~~~ 231 (618)
+++++||+| .+.|.++|++|.|++++||+||+|||++|+++|+|+ +|+.+.-. . .....+.+++|
T Consensus 305 ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~ 383 (765)
T PRK15098 305 DAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRLH 383 (765)
T ss_pred HHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCHHH
Confidence 999999998 245889999999999999999999999999999998 56422100 0 01123457899
Q ss_pred HHHHHHHHhhcceeccCCCCCCCCCCCCCcEEEEEccCCCcccccccccc--ccCCCcCCHHHHHHhhh----heeeecc
Q 007089 232 QQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA--GVACGYTTPLQGISRYA----KTIHQAG 305 (618)
Q Consensus 232 ~~la~~~A~esivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~--g~~~~~~t~~~~l~~~~----~~~y~~g 305 (618)
+++++++|++|||||||++++|||++. +||+||||+++....+.|+|+ +.+.+.++++++|+++. .+.|..|
T Consensus 384 ~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G 461 (765)
T PRK15098 384 RKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKG 461 (765)
T ss_pred HHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecc
Confidence 999999999999999999999999853 699999999988775667664 56677899999999874 3578888
Q ss_pred cccccc-------------------CCccchHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHh
Q 007089 306 CFGVAC-------------------NGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA 366 (618)
Q Consensus 306 ~~~~~~-------------------~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~ 366 (618)
|..... .....+++|+++|+.||++||++|.+...++|+.||.+|.||+.|.+||++|++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~ 541 (765)
T PRK15098 462 ANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT 541 (765)
T ss_pred cccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh
Confidence 742110 1124578899999999999999999988899999999999999999999999874
Q ss_pred cCCCEEEEEEcCceeecccccCCCCccEEEEccCCCcchhHHHHHHHcCCCCCCcccCcccCCccccCCCCCcccccccc
Q 007089 367 SRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAA 446 (618)
Q Consensus 367 ~~k~vVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~ 446 (618)
++|+|||+++|+||+|+|+. ++++|||++|+||+++|+|+||||||++|||||||+|| |++. +++|.++......
T Consensus 542 -~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~ 616 (765)
T PRK15098 542 -GKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTG 616 (765)
T ss_pred -CcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCC
Confidence 68999999999999999873 58999999999999999999999999999999999997 8887 7888654221111
Q ss_pred CCC-----CCCccccCCC--CcccccCcCCCCCCceecCCccCCCcccccccccccccccccccccccccccCCCCCeeE
Q 007089 447 RGY-----PGRTYRFYKG--PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSL 519 (618)
Q Consensus 447 ~~~-----~~~~Yr~~~~--~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
..| .+.+||||+. +|+||||||||||||+||++++.+. . .. .+. .+
T Consensus 617 ~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~~--------------------~--~~----~~~-~i 669 (765)
T PRK15098 617 RPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSSP--------------------T--MK----RDG-KV 669 (765)
T ss_pred CccccCcccccccceeccCCCccccccCCCCCccEEeeccEeccc--------------------c--cc----CCC-eE
Confidence 112 2236899986 5999999999999999999986420 0 00 112 69
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceEEE
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSL 598 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i 598 (618)
+|+|+|||||+++|+||||||+++|.++ .+|.|||+||+||+|+|||+++|+|+|+. ++|++||.+++|++|+|+|+|
T Consensus 670 ~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v 748 (765)
T PRK15098 670 TASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNV 748 (765)
T ss_pred EEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEE
Confidence 9999999999999999999999999876 89999999999999999999999999999 999999999999999999999
Q ss_pred EEeCCCCeEE
Q 007089 599 HIGDLKHSIS 608 (618)
Q Consensus 599 ~vG~ss~~~~ 608 (618)
+||.||++++
T Consensus 749 ~vG~ss~d~~ 758 (765)
T PRK15098 749 FIGLDSARVK 758 (765)
T ss_pred EEECCCCccc
Confidence 9999999885
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-52 Score=444.92 Aligned_cols=244 Identities=31% Similarity=0.537 Sum_probs=213.3
Q ss_pred cceE-eCccccccCCCCCCccccc-cCCCHHHHHHHHHHHHHHHhcCCCCCCeEEEeecccccccCCCCCCCCccccccc
Q 007089 8 GLTY-WSPNVNIFRDPRWGRGQET-PGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (618)
Q Consensus 8 Gi~~-laP~~di~r~p~~gR~~e~-fgeDP~l~~~~a~a~v~Glq~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (618)
|||+ |+||+||.|||+|||..|+ |||||++++.|+.|||+|||+. ||++|+|||||||..+ .+++..++.
T Consensus 113 Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-----gv~at~KHFpGhG~~~---~dsh~~~~~ 184 (397)
T COG1472 113 GINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-----GVAATIKHFPGHGAVE---GDSHYGLLP 184 (397)
T ss_pred CCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-----CceeeeccccCCCCCc---CCcccccCC
Confidence 9999 9999999999999999888 9999999999999999999998 8999999999998542 233333378
Q ss_pred cCHHHHHHhhcHHHHHHHHcCC--CceEEecccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhhhccccccccCC
Q 007089 86 VSKQDLEDTYNVPFKACVVEGK--VASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (618)
Q Consensus 86 ~~~~~l~e~~l~pF~~ai~~g~--~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~~~~~~~~~~~~ 163 (618)
++++.|+|+|++||+.+++.+. ++++|++||++||.|||.|+++|++|||++|||+|+|||||++|+++...+ .+
T Consensus 185 v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~ 261 (397)
T COG1472 185 IDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GS 261 (397)
T ss_pred CChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cC
Confidence 8999999999999999999986 899999999999999999999999999999999999999999999876643 35
Q ss_pred HHHHHHHHHHH------------HHHHHHHHHCCCCCHHHHHHHHhhhHHHHHHhCCCCCCCCCCCCCCCCCCCCCCHHH
Q 007089 164 PEEAAADAIKA------------AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAH 231 (618)
Q Consensus 164 ~~~a~~~al~a------------~~~l~~av~~G~i~~~~ld~av~RiL~~k~~lGl~~~~p~~~~~~~~~~~~~~~~~~ 231 (618)
..+.+.++|+| ...+..+...+ +++++++++++|||++|+++|+|+ +|+. .+|
T Consensus 262 ~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~~~-------------~~~ 326 (397)
T COG1472 262 AADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NPYS-------------SEH 326 (397)
T ss_pred HHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CCCc-------------hhh
Confidence 66777778888 22333444444 999999999999999999999999 6652 189
Q ss_pred HHHHHHHHhhcceeccCCCCCCCCCCCCCcEEEEEccCCCcccccccccc
Q 007089 232 QQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 281 (618)
Q Consensus 232 ~~la~~~A~esivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~ 281 (618)
++++++++++|+|||||+..+|||+ ++.++|+++||.++.. . |+|+
T Consensus 327 ~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 327 RALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 9999999999999999998899999 5557999999999987 5 5554
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=1.8e-46 Score=390.76 Aligned_cols=183 Identities=33% Similarity=0.560 Sum_probs=154.3
Q ss_pred ccceE-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHhcCCCCCCeEEEeeccccccc-CCCCCCCCcccccc
Q 007089 7 AGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYD-LDNWNGVDRYHFNA 84 (618)
Q Consensus 7 ~Gi~~-laP~~di~r~p~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~~~~~~~v~a~~KHF~g~g-~~~~~~~~r~~~~~ 84 (618)
.|||+ |||++||.|+|+|||++|||||||+++++|+.|||+|+|+. ||++|+||||||+ .|+|. ...++
T Consensus 101 ~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q~~-----gv~~~~KHFpG~~~~d~~~----~~~~~ 171 (299)
T PF00933_consen 101 LGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQGA-----GVAATAKHFPGHGAQDSHR----DLPSV 171 (299)
T ss_dssp TT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHHCT-----TSEEEEEEETTGGCSCTTT----TTEEE
T ss_pred hhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccccc-----ccccccccccccccccccc----cccee
Confidence 39999 99999999999999999999999999999999999999999 7999999999973 45543 44456
Q ss_pred ccCHHHHHHhhcHHHHHHHHcCCCceEEecccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhhhccccccccCCH
Q 007089 85 RVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTP 164 (618)
Q Consensus 85 ~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~~~~~~~~~~~~~ 164 (618)
.++.++|+|.||+||+.+|+++++.+||+||+.+|++|||+|+++|+++||++|||+|+|||||++|+++...+ +.
T Consensus 172 ~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~ 247 (299)
T PF00933_consen 172 DVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----SI 247 (299)
T ss_dssp E--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----TH
T ss_pred cCCcccccchhcccchhcccccccceeeeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhcc----cc
Confidence 77999999999999999995556999999999999999999999999999999999999999999999987643 47
Q ss_pred HHHHHHHHHH--------------HHHHHHHHHCCCCCHHHHHHHHhhhHHH
Q 007089 165 EEAAADAIKA--------------AIHTEGAVRGGLLREEDVNLALAYTITV 202 (618)
Q Consensus 165 ~~a~~~al~a--------------~~~l~~av~~G~i~~~~ld~av~RiL~~ 202 (618)
.+++.++|+| .+.|.++|++|.++++|||+||+|||++
T Consensus 248 ~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 248 EEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred chHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 8999999999 3889999999999999999999999985
No 5
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=3.9e-40 Score=330.29 Aligned_cols=217 Identities=41% Similarity=0.602 Sum_probs=153.9
Q ss_pred ceeccCCCCCCCCCCCCCcEEEEEccCCCcccccccccc-ccCCCcCCHHHHHHhhhhe---eeeccccccccCCccchH
Q 007089 243 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA-GVACGYTTPLQGISRYAKT---IHQAGCFGVACNGNQLIG 318 (618)
Q Consensus 243 ivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~-g~~~~~~t~~~~l~~~~~~---~y~~g~~~~~~~~~~~~~ 318 (618)
||||||++++|||++++. ||+|+|+.+.....++|++. ..+....+++++|+++... .+..++. .......++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999997643 99999999998766555443 3455678999999988542 2221110 112456788
Q ss_pred HHHHHhhcCCEEEEEecCCc------ccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEcCceeecccccCCCCc
Q 007089 319 AAEVAARQADATVLVMGLDQ------SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRI 392 (618)
Q Consensus 319 ~a~~~a~~aD~vIv~vg~~~------~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~g~P~~l~~~~~~~~v 392 (618)
++++.++++|++||++|... ..++| .||.++.||..|.+||+++++.+ +|+|||+++|+||++.++. +++
T Consensus 78 ~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~-~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~~~ 153 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGRPSGEGNDNNTEGE-SDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--DNV 153 (227)
T ss_dssp HHHHHHHCSSEEEEEEETTSBCCCSS-EETT-GSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--HC-
T ss_pred HHHHHhhcCCEEEEecccccccccccccccc-CCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--hhh
Confidence 99999999999999999221 11223 69999999999999999999864 6899999999999997764 489
Q ss_pred cEEEEccCCCcchhHHHHHHHcCCCCCCcccCcccCCccccCCCCCccccccccCCCCCCccccCCCCcccccCcCCCCC
Q 007089 393 GAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYT 472 (618)
Q Consensus 393 ~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~GLSYT 472 (618)
+|||++|++|+++++|+||||||++|||||||+|| |++. +++|...... ..+++|++....++||||||||||
T Consensus 154 ~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLsyt 226 (227)
T PF01915_consen 154 DAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLSYT 226 (227)
T ss_dssp SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS------THCCHHHHTTSESB-TT--B-TT
T ss_pred ceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-----ccCcccccCCCCccCcCCCCCEee
Confidence 99999999999999999999999999999999997 8876 6788542111 123457777789999999999999
Q ss_pred C
Q 007089 473 T 473 (618)
Q Consensus 473 t 473 (618)
+
T Consensus 227 ~ 227 (227)
T PF01915_consen 227 Y 227 (227)
T ss_dssp -
T ss_pred C
Confidence 6
No 6
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=3e-38 Score=331.33 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=148.4
Q ss_pred cceE-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHhcCCCCCCeEEEeecccccccCCC---CCCCCccccc
Q 007089 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN---WNGVDRYHFN 83 (618)
Q Consensus 8 Gi~~-laP~~di~r~p~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~~~~~~~v~a~~KHF~g~g~~~---~~~~~r~~~~ 83 (618)
|||+ |+||+||.+++.| |+.|+|||||+++++|+.||++|||+. ||++|+|||||||.+. |.+.+ .
T Consensus 114 Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-----gv~~~~KHFpG~G~~~~dsh~~~~----~ 183 (337)
T PRK05337 114 GIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-----GMAATGKHFPGHGAVEADSHVETP----V 183 (337)
T ss_pred CCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-----CCEEEecccCCCCCCcCCCCCCCC----C
Confidence 9999 9999999965555 788999999999999999999999998 7999999999999643 32222 1
Q ss_pred cccCHHHHHHhhcHHHHHHHHcCCCceEEec---ccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhhhccccccc
Q 007089 84 ARVSKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHY 160 (618)
Q Consensus 84 ~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~s---y~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~~~~~~~~~ 160 (618)
.+.+.++|++.||+||+.+|++| +.+|||| |+.+|++|||+|+++|+++||+||||+|+|||||++|+++..
T Consensus 184 ~~~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~---- 258 (337)
T PRK05337 184 DERPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV---- 258 (337)
T ss_pred CCCCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----
Confidence 23466799999999999999988 9999999 899999999999999999999999999999999999987532
Q ss_pred cCCHHHHHHHHHHH-------------HHHHHHHHHCCCCCHHHHHHHHhhhHHHHHHh
Q 007089 161 TRTPEEAAADAIKA-------------AIHTEGAVRGGLLREEDVNLALAYTITVQMRL 206 (618)
Q Consensus 161 ~~~~~~a~~~al~a-------------~~~l~~av~~G~i~~~~ld~av~RiL~~k~~l 206 (618)
..+..+++.++|+| ...+.+++.+ +++.+|+++++.+.
T Consensus 259 ~~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 259 AGDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred cCCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 34778899999998 3445555544 67788888887663
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.83 E-value=9.4e-21 Score=154.44 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=59.9
Q ss_pred eEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEeccCCceeEEeCC-CCEEecCceEEEEEeCCC
Q 007089 535 HTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLK 604 (618)
Q Consensus 535 evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss 604 (618)
||||||+++|.+. .+|.|+|+||+||+|+|||+++|+|+|+. ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999986 89999999999999999999999999999 999999998 699999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.37 E-value=0.011 Score=50.59 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=43.7
Q ss_pred eEEEEEEEEeCCCC-CcceEEEEeeeCCCCCCCCcccccccccc-ccCCCCeEEEEEEeccCCceeEEeCCCCEEecCce
Q 007089 518 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 595 (618)
Q Consensus 518 ~~~v~v~VtNtG~~-~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 595 (618)
.++++++|+|.|.. ++.-.|++|+.... .+-..| .|+|||+++++|++.. . .+|.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G~ 76 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SPGS 76 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-CE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CCCe
Confidence 68999999999997 46668888876532 244555 6999999999999987 2 4677
Q ss_pred EEEEEe
Q 007089 596 HSLHIG 601 (618)
Q Consensus 596 y~i~vG 601 (618)
|.|.+=
T Consensus 77 ~~i~~~ 82 (101)
T PF07705_consen 77 YTIRVV 82 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777653
No 9
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=95.30 E-value=0.11 Score=43.37 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=33.7
Q ss_pred EEEEEEEEeCCCCC------cceEEEEeeeCCCCC-------CCCccccccccccccCCCCeEEEEEEeccCCceeEEeC
Q 007089 519 LGLHVDIKNTGDMA------GTHTLLVFAKPPAGN-------WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 585 (618)
Q Consensus 519 ~~v~v~VtNtG~~~------G~evvQlY~~~~~~~-------~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~ 585 (618)
+.++++|+|+++.+ .---.-+.|.++.+. ++.- ...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 56778888888742 111123344444332 2222 23445677999999999999998 5544
Q ss_pred CCCEEecCceEEEE
Q 007089 586 FGIRRIPMGEHSLH 599 (618)
Q Consensus 586 ~~~~~~~~G~y~i~ 599 (618)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999875
No 10
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.51 E-value=0.19 Score=41.29 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=35.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCC-C--CCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-N--WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 594 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~-~--~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 594 (618)
.++++++|+|.|..+-.. +.+=++.|.+ . ..|. ++ ..|+|||+++++|.|..-.+ .++|
T Consensus 6 ~~~~~~tv~N~g~~~~~~-v~~~l~~P~GW~~~~~~~-~~-----~~l~pG~s~~~~~~V~vp~~-----------a~~G 67 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTN-VSLSLSLPEGWTVSASPA-SV-----PSLPPGESVTVTFTVTVPAD-----------AAPG 67 (78)
T ss_dssp EEEEEEEEE--SSS-BSS--EEEEE--TTSE---EEE-EE-------B-TTSEEEEEEEEEE-TT-------------SE
T ss_pred EEEEEEEEEECCCCceee-EEEEEeCCCCccccCCcc-cc-----ccCCCCCEEEEEEEEECCCC-----------CCCc
Confidence 689999999999765332 3343445543 1 1222 11 16999999999999987211 4589
Q ss_pred eEEEEE
Q 007089 595 EHSLHI 600 (618)
Q Consensus 595 ~y~i~v 600 (618)
+|.|.+
T Consensus 68 ~y~v~~ 73 (78)
T PF10633_consen 68 TYTVTV 73 (78)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 998765
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=92.69 E-value=2.7 Score=46.00 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=66.5
Q ss_pred HHHcCCCceEEecccCCCC-----cccccCHHHHHHHHHhhcCCCcEEEccchhhh-hccccccccCCHHHHHHHHHHH-
Q 007089 102 CVVEGKVASVMCSYNQVNG-----KPTCADPDILKNTIHGQWRLDGYIVSDCDSVG-VLYNTQHYTRTPEEAAADAIKA- 174 (618)
Q Consensus 102 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~-~~~~~~~~~~~~~~a~~~al~a- 174 (618)
.|+++ ...+|.+.+++.| ..|+.++.+++.+|+-=+.. |.-+..-++.. ..+-+.+...+..|+++.-++|
T Consensus 60 ~iDe~-lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~ 137 (454)
T COG0486 60 IIDEV-LVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAK 137 (454)
T ss_pred Eeeee-eEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCCcchHHHHhcCCccHHHHHHHHHHHhCC
Confidence 45566 6678999999877 46899999888888865444 45666555432 1222334444566777776766
Q ss_pred -HHHHHHHHHC--CCCCHHHHHHHHhhhHHHHHHh
Q 007089 175 -AIHTEGAVRG--GLLREEDVNLALAYTITVQMRL 206 (618)
Q Consensus 175 -~~~l~~av~~--G~i~~~~ld~av~RiL~~k~~l 206 (618)
-.....|+++ |.++ .++++-.++++.+....
T Consensus 138 te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~v 171 (454)
T COG0486 138 TEQAARIALRQLQGALS-QLINELREALLELLAQV 171 (454)
T ss_pred CHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHh
Confidence 3344455544 7664 67888888888877665
No 12
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.20 E-value=2.4 Score=36.47 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=38.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccccccCCCCeEEEEEEeccCCceeEEe
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVD 584 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d 584 (618)
..+.+++|+|+|....+-- ++.+....... -.-+..-.|+||++.++++++........++
T Consensus 21 ~~~~~v~l~N~s~~p~~f~----v~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFR----VRQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEEEEEEEEECCCCCEEEE----EEeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 5789999999999985433 33333111111 1123345699999999999999325555443
No 13
>PRK13203 ureB urease subunit beta; Reviewed
Probab=89.13 E-value=0.68 Score=39.80 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=30.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|. ||+=-....-...| ...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 47899999999998 88733222111101 1111111 3456799999999874
No 14
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=89.00 E-value=0.74 Score=39.55 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCCccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~-----~~P~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|+ +|+=-....-. .-....=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 37899999999998 88732221110 1111111122 3466799999999874
No 15
>PRK13202 ureB urease subunit beta; Reviewed
Probab=86.45 E-value=1.4 Score=37.91 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=30.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|. +|+=-....-...| ...=.|+ .-|..+|||+++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 36899999999998 78732222111111 0011111 3466799999999874
No 16
>PRK13201 ureB urease subunit beta; Reviewed
Probab=85.69 E-value=1.4 Score=39.70 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=31.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|. ||+=-....-...| ...=.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 47899999999998 88732222111111 1111121 3466799999999985
No 17
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=85.06 E-value=1.9 Score=37.08 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=30.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|. +|+=-....-...| ...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 37899999999998 88732221110000 1111121 3466799999999874
No 18
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=84.62 E-value=1.9 Score=37.37 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=28.3
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceEEEE
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLH 599 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~ 599 (618)
.|+++++|.|... .++ .+.. .+ ....|.||++++++|+-.. +|+|.++
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~-----------~~-~~~~l~~g~~~~~~f~~~~----------------~G~y~~~ 91 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD-----------LG-ISKVLPPGETATVTFTPLK----------------PGEYEFY 91 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG-----------GT-EEEEE-TT-EEEEEEEE-S-----------------EEEEEB
T ss_pred eEEEEEEECCCCc-EEE---EECC-----------Cc-eEEEECCCCEEEEEEcCCC----------------CEEEEEE
Confidence 5778889999885 222 1111 12 2356999999999985433 6888887
Q ss_pred EeC
Q 007089 600 IGD 602 (618)
Q Consensus 600 vG~ 602 (618)
.+-
T Consensus 92 C~~ 94 (104)
T PF13473_consen 92 CTM 94 (104)
T ss_dssp -SS
T ss_pred cCC
Confidence 663
No 19
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=84.19 E-value=1.6 Score=31.89 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCcceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEE
Q 007089 522 HVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 573 (618)
Q Consensus 522 ~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~ 573 (618)
+++++|+|+.. |.+..-..+ + =....+.|-.|+|||+.+++++
T Consensus 1 ~F~~~N~g~~~------L~I~~v~tsCg---Ct~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP------LVITDVQTSCG---CTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc------EEEEEeeEccC---CEEeeCCcceECCCCEEEEEEE
Confidence 37889999776 444443332 1 0112245556999999998875
No 20
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=84.17 E-value=1.6 Score=37.48 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=26.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
.-+++++|+|||+|. +|+=-........| ...=.|+ .-|..+|||+++|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 358999999999998 88732222111111 0011111 3456789999999874
No 21
>PRK13205 ureB urease subunit beta; Reviewed
Probab=83.87 E-value=1.8 Score=39.87 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=31.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|. ||+=-....-...| ...=.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 47899999999998 88732222111111 1111122 3466799999999985
No 22
>PRK13204 ureB urease subunit beta; Reviewed
Probab=79.98 E-value=3.3 Score=38.24 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=30.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-.++++|+|||+|. |||=-....-...| ...=.|+ .-|..+|||+++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 37899999999998 88732222111111 1111121 3466799999999885
No 23
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=79.74 E-value=4 Score=36.76 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=31.8
Q ss_pred EEEEEEEeCCCCC----cceEEEEeeeCCCCC---------------CCCc--cccccccccccCCCCeEEEEEEecc
Q 007089 520 GLHVDIKNTGDMA----GTHTLLVFAKPPAGN---------------WSPN--KQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 520 ~v~v~VtNtG~~~----G~evvQlY~~~~~~~---------------~~P~--k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
+|+|+.+|+|+.+ |--.|- ..+... --|. .+..+..|+ |.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl-iggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKV-IGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEccc-cCCCceEEEEEECCC
Confidence 6888899999876 544442 222110 0121 233333332 699999999999864
No 24
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=78.14 E-value=3.5 Score=35.27 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=30.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCC--C--CC---CCCc---c--ccccccccccCCCCeEEEEEE
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPP--A--GN---WSPN---K--QLIGFKKVHVTAGALQSVRLD 573 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~--~--~~---~~P~---k--~L~gF~kv~l~pGes~~V~~~ 573 (618)
.-+++++|.|||+|. +|+=-... . .. +|.. + ..-.=+-|..+||+.|+|++-
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 357888899999998 78722211 1 11 1110 0 011124466799999999874
No 25
>PRK13198 ureB urease subunit beta; Reviewed
Probab=78.05 E-value=4.1 Score=37.60 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=30.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|. ||+=-....-...| ...=.|+ .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 47899999999998 88732221111111 1111122 3466799999999875
No 26
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=76.31 E-value=10 Score=31.86 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=31.1
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCC-CCCCCCccccccccccccCCCCeEEEEEEecc
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPP-AGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~-~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
.+.++++|.|+.+ +.+-+.+. +....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~----~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAA----VTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCc----EEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6889999987554 44444432 211333 4678999999999999843
No 27
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=75.14 E-value=4.8 Score=39.77 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=31.6
Q ss_pred EEEeCCCCCcceEEEEeeeCCCCC---CCC--------ccccccccccccCCCCeEEEEEEeccCCceeEEeCCCC
Q 007089 524 DIKNTGDMAGTHTLLVFAKPPAGN---WSP--------NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGI 588 (618)
Q Consensus 524 ~VtNtG~~~G~evvQlY~~~~~~~---~~P--------~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~ 588 (618)
++-|.|. |.-+++||-+.+... ..| .+.+....++.|.||||- +|.+.-.-++|-+.|.
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi----TL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI----TLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE----EE-TTEEEEEEE-TTS
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE----eeCCCCeeeEEecCCC
Confidence 4466664 778888998876542 222 456888999999999985 6666223356654433
No 28
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=74.32 E-value=8.5 Score=34.28 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=37.3
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCC-C-CCCCcccccccccc-ccCCCCeEEEEEEecc
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPA-G-NWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 576 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~-~-~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~ 576 (618)
..+++|+|+|+ -.-.+|+.+.... . ...+...|.=+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 67899999999 4567888888621 1 13333345545445 489999999999 544
No 29
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=72.36 E-value=6 Score=38.41 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|. +|+=-....-...| .+.=.|| .-|..+|||+++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 37899999999998 78732222111111 1111122 3456789999998874
No 30
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=72.01 E-value=13 Score=33.37 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=36.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCC------------------CCCccccccccc-cccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN------------------WSPNKQLIGFKK-VHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~------------------~~P~k~L~gF~k-v~l~pGes~~V~~~l~~ 576 (618)
..+++++|+|+++-.-+ +++++..-.+. ..+..+|....+ |.|+|+|+++|+|+|..
T Consensus 28 ~~~l~v~i~N~s~~~~t--v~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEIT--VKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred EEEEEEEEEeCCCCCEE--EEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 56888999998875533 44443321110 123444544444 67999999999999986
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=71.48 E-value=8.4 Score=40.88 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=29.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEE--e-------eeCCCCC---CCCccccccc-----c-ccccCCCCeEEEEEEec
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLV--F-------AKPPAGN---WSPNKQLIGF-----K-KVHVTAGALQSVRLDIH 575 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQl--Y-------~~~~~~~---~~P~k~L~gF-----~-kv~l~pGes~~V~~~l~ 575 (618)
+++++++|||+|+.+ |+| | +.+.... ..|. +|.+- . .--++|||++++++++.
T Consensus 264 ~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 799999999999755 444 1 1111111 2233 55543 2 22489999999999984
No 32
>PRK13986 urease subunit alpha; Provisional
Probab=68.01 E-value=8.4 Score=37.87 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
-+++++|+|||+|+ +|+=-....-...| ...=.|| .-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 37899999999998 78732221111111 0111111 3466799999999874
No 33
>COG1470 Predicted membrane protein [Function unknown]
Probab=67.33 E-value=5.8 Score=43.31 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=45.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeee-CCCC-C-CCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAK-PPAG-N-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 594 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~-~~~~-~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 594 (618)
+..++|++.|-|.-+=+ .-|=++ .|.. . ..-.-+++ -.||.|.|||+++|++++.+. . -.+||
T Consensus 285 t~sf~V~IeN~g~~~d~--y~Le~~g~pe~w~~~Fteg~~~-vt~vkL~~gE~kdvtleV~ps-~----------na~pG 350 (513)
T COG1470 285 TASFTVSIENRGKQDDE--YALELSGLPEGWTAEFTEGELR-VTSVKLKPGEEKDVTLEVYPS-L----------NATPG 350 (513)
T ss_pred ceEEEEEEccCCCCCce--eEEEeccCCCCcceEEeeCceE-EEEEEecCCCceEEEEEEecC-C----------CCCCC
Confidence 57899999999976522 222222 3332 1 00011111 367889999999999999882 1 24689
Q ss_pred eEEEEEeCCC
Q 007089 595 EHSLHIGDLK 604 (618)
Q Consensus 595 ~y~i~vG~ss 604 (618)
+|.+.|-.+|
T Consensus 351 ~Ynv~I~A~s 360 (513)
T COG1470 351 TYNVTITASS 360 (513)
T ss_pred ceeEEEEEec
Confidence 9998877544
No 34
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=66.33 E-value=41 Score=29.42 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=30.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEe-----eeCCCCC---CCC---c--cccccccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVF-----AKPPAGN---WSP---N--KQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY-----~~~~~~~---~~P---~--k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
..+.+++++|.|+.+=.--+... ..+.... ..+ . .....=.++.|+||++++|+++++.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 46889999999997644333322 1111111 111 1 1222224567899999999999987
No 35
>COG1470 Predicted membrane protein [Function unknown]
Probab=66.05 E-value=30 Score=38.00 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=46.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCcccccccccc-ccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceE
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 596 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y 596 (618)
..++.+.|.|+|+.+=..+ -|=+..|..= .-+.-.+ ++ .|+|||+++|.++++.-. -..+|+|
T Consensus 398 e~~i~i~I~NsGna~LtdI-kl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~-----------~a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLTDI-KLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVPE-----------DAGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCcccee-eEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcCC-----------CCCCCcE
Confidence 4688999999997664443 3445556541 1233344 45 489999999999988721 1357899
Q ss_pred EEEEeC
Q 007089 597 SLHIGD 602 (618)
Q Consensus 597 ~i~vG~ 602 (618)
.|.+-.
T Consensus 462 ~i~i~~ 467 (513)
T COG1470 462 RITITA 467 (513)
T ss_pred EEEEEE
Confidence 888774
No 36
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=63.23 E-value=24 Score=32.85 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=40.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccccc-cCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH-VTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~-l~pGes~~V~~~l~~ 576 (618)
-+.|.++.+|+++. ++-=+-+..+. -..-.++++|.++. |+||++.++.+-++-
T Consensus 86 mvsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 86 MVSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred cEEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 47899999999985 34444555443 12344799999997 899999999998876
No 37
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=63.12 E-value=14 Score=32.03 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=33.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeee--CCCCCCCCc-cccccccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAK--PPAGNWSPN-KQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~--~~~~~~~P~-k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
.++++++++|..+..-+. |++.+. .-...+.+. .-.+-...+.|+|||++++++.+.+
T Consensus 16 d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 689999999999988444 222221 111122222 1233344567999999999999987
No 38
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=59.93 E-value=56 Score=29.49 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=38.4
Q ss_pred eEEEEEEEEeCCCC----CcceEEEEeeeCCCCC---CCCccccccccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDM----AGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~----~G~evvQlY~~~~~~~---~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
.-.+.+++||+|+. .|-=-|++. +.... ....++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 35889999999996 566566666 22222 12222333456788999999999888775
No 39
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=58.81 E-value=23 Score=32.81 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=36.9
Q ss_pred eEEEEEEEEeCCCCCcceE-EE--EeeeC-CCCC--CCCcccccccccc------ccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHT-LL--VFAKP-PAGN--WSPNKQLIGFKKV------HVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~ev-vQ--lY~~~-~~~~--~~P~k~L~gF~kv------~l~pGes~~V~~~l~~ 576 (618)
.+.|..+|||+|+++=++| ++ ++-.. .... ..=..++.+|.+. .|+|||++..++.++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 6899999999999876553 22 22111 1111 2224445556322 2999999999998875
No 40
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=55.44 E-value=11 Score=39.81 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=34.3
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||+||++.|... .+|.+|.++--.. --.++++++.+.+++..|+++. ++|+|+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 45789999999998643 3455664431111 1234555666654435565555 599987
No 41
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=55.08 E-value=38 Score=37.80 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=45.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceEE
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 597 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~ 597 (618)
.+++.++|+-+|++ -|.+||-+.. ++.+++.+..|.-+. +.|+|.|.. +++|.|.
T Consensus 328 ~~~i~ftv~a~g~~----~vta~V~d~~------g~~~~~~~~~v~d~s-~~vtL~Ls~--------------~~AG~y~ 382 (478)
T PRK13211 328 AATLDFTVTATGDM----NVEATVYNHD------GEALGSKSQTVNDGS-QSVSLDLSK--------------LKAGHHM 382 (478)
T ss_pred cEEEEEEEEeccce----EEEEEEEcCC------CCeeeeeeEEecCCc-eeEEEeccc--------------CCCceEE
Confidence 68899999988866 4777776654 578888888887765 888888876 5678887
Q ss_pred EEEe
Q 007089 598 LHIG 601 (618)
Q Consensus 598 i~vG 601 (618)
|.|-
T Consensus 383 Lvv~ 386 (478)
T PRK13211 383 LVVK 386 (478)
T ss_pred EEEE
Confidence 7654
No 42
>COG1160 Predicted GTPases [General function prediction only]
Probab=54.82 E-value=32 Score=37.85 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEc
Q 007089 318 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 377 (618)
Q Consensus 318 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~ 377 (618)
+++..++++||++|+++... + .+.+...++.+.|. ..+||+|+|++-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 45667789999999998532 1 23455556666666 457899999883
No 43
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=52.43 E-value=19 Score=27.92 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.1
Q ss_pred ecCceEEEEEe
Q 007089 591 IPMGEHSLHIG 601 (618)
Q Consensus 591 ~~~G~y~i~vG 601 (618)
++||+|+|.|-
T Consensus 36 L~~G~Y~l~V~ 46 (66)
T PF07495_consen 36 LPPGKYTLEVR 46 (66)
T ss_dssp --SEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 78999999886
No 44
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=51.72 E-value=39 Score=31.02 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=20.8
Q ss_pred ccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceEEEEEeC
Q 007089 561 HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGD 602 (618)
Q Consensus 561 ~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ 602 (618)
.|+|||+++++|..+. +|.|.++.+-
T Consensus 95 ~I~pGet~TitF~adK----------------pG~Y~y~C~~ 120 (135)
T TIGR03096 95 VIKAGETKTISFKADK----------------AGAFTIWCQL 120 (135)
T ss_pred EECCCCeEEEEEECCC----------------CEEEEEeCCC
Confidence 4899999999999876 6777776663
No 45
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=51.44 E-value=1.7e+02 Score=32.55 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=63.0
Q ss_pred HHHcCCCceEEecccCCCC-----cccccCHHHHHHHHHhhcCCCcEEEccchhhh-hccccccccCCHHHHHHHHHHH-
Q 007089 102 CVVEGKVASVMCSYNQVNG-----KPTCADPDILKNTIHGQWRLDGYIVSDCDSVG-VLYNTQHYTRTPEEAAADAIKA- 174 (618)
Q Consensus 102 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~-~~~~~~~~~~~~~~a~~~al~a- 174 (618)
.|+++ ....|.+.+++.| ..|+.++.+++.+|..=+-. |.-..+-++.- ..+-+.+...+..|++..-|.|
T Consensus 50 ~iD~~-l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R~A~pGEFT~RAflNGk~DL~qaEav~dlI~a~ 127 (442)
T TIGR00450 50 CKDDE-LLFKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GARLAQPGEFTQRAFLNGKMDLTQAEAINELILAP 127 (442)
T ss_pred EeeeE-EEEEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCeEcCCchhhHHHHhcCCccHHHHHHHHHHHhCC
Confidence 34555 5678999999877 47999999999888855444 66677766432 1222333444566777777776
Q ss_pred -HHHHHHHHHC--CCCCHHHHHHHHhhhHHHHHHh
Q 007089 175 -AIHTEGAVRG--GLLREEDVNLALAYTITVQMRL 206 (618)
Q Consensus 175 -~~~l~~av~~--G~i~~~~ld~av~RiL~~k~~l 206 (618)
......|+++ |.++ +++++--.+++.+...+
T Consensus 128 t~~~~~~A~~~l~G~ls-~~~~~~r~~l~~~~a~i 161 (442)
T TIGR00450 128 NNKVKDIALNKLAGELD-QKIEAIRKSLLQLLAQV 161 (442)
T ss_pred CHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHe
Confidence 3334444433 6554 45566566666665554
No 46
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=49.77 E-value=55 Score=25.47 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=26.1
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhc-CCCEEEEEE
Q 007089 323 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKAS-RGPVVLVLM 376 (618)
Q Consensus 323 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~-~k~vVvVl~ 376 (618)
++--.+++++++..+. .. |. -.++|..|.+.+.... ++|+|+|++
T Consensus 10 L~hL~~~ilfi~D~Se-~C--Gy------sie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 10 LAHLADAILFIIDPSE-QC--GY------SIEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp GGGT-SEEEEEE-TT--TT--SS-------HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHhhcceEEEEEcCCC-CC--CC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3344577777664321 11 11 2468999999998776 789988875
No 47
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.99 E-value=1.1e+02 Score=29.65 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=48.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEee-eCCCCC-----CCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCC---
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFA-KPPAGN-----WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGI--- 588 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~-~~~~~~-----~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~--- 588 (618)
.++|+++|.|.|+-+..+|. |.= +.|... +.+... |+ .|+||++.+-++.|.+ ....+++-...
T Consensus 39 ~v~V~~~iyN~G~~~A~dV~-l~D~~fp~~~F~lvsG~~s~~---~~--~i~pg~~vsh~~vv~p-~~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDVK-LTDDSFPPEDFELVSGSLSAS---WE--RIPPGENVSHSYVVRP-KKSGYFNFTPAVVT 111 (181)
T ss_pred EEEEEEEEEECCCCeEEEEE-EECCCCCccccEeccCceEEE---EE--EECCCCeEEEEEEEee-eeeEEEEccCEEEE
Confidence 69999999999998766654 332 223211 111111 22 4999999999999998 66666654432
Q ss_pred EEecCceEEEEEeCCC
Q 007089 589 RRIPMGEHSLHIGDLK 604 (618)
Q Consensus 589 ~~~~~G~y~i~vG~ss 604 (618)
+..+.|.=....+.|+
T Consensus 112 Y~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSS 127 (181)
T ss_pred EECCCCCceeEEEEec
Confidence 3334443344444443
No 48
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=47.73 E-value=15 Score=38.72 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||+||++.|... .+|.+|.++ =..- .++++++.+..++..++++. ++|+|+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~ivivv-tNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVKVLVI-GNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCchHH
Confidence 35689999999988643 345555432 1122 23445555544332444444 599987
No 49
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=44.48 E-value=1.4e+02 Score=24.51 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=42.8
Q ss_pred eEEEEEEEEe--CCCCCcceEEEEeeeCCCCCCCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCce
Q 007089 518 SLGLHVDIKN--TGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 595 (618)
Q Consensus 518 ~~~v~v~VtN--tG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 595 (618)
.+++++.+-| +.=..|. -+++|+..... +. .+.....-.|.||++..|+|.+.. +.+ +.+..|.+.+..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy-~~~l~~~t~~~---~~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g- 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGY-QATVHIGSIRQ---TA-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG- 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCC-EeEEEEcCCEE---EE-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-
Confidence 4566666666 2223443 34566554331 11 111111146899999999999643 455 4455567777777
Q ss_pred EEEEEe
Q 007089 596 HSLHIG 601 (618)
Q Consensus 596 y~i~vG 601 (618)
-++.+|
T Consensus 77 ~tva~G 82 (87)
T cd03708 77 RTKGVG 82 (87)
T ss_pred CcEEEE
Confidence 566665
No 50
>PRK05442 malate dehydrogenase; Provisional
Probab=43.99 E-value=23 Score=37.56 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||+||++.|... .+|.+|.++ -..-. ++++++.+..++..++++. ++|+|+
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 135 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLVV-GNPANT 135 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHH
Confidence 45689999999988543 345555432 12222 3445555533234555444 599987
No 51
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.97 E-value=22 Score=37.71 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=32.9
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..+.+|+||++.|... .+|.+|.++- ..- .++.+++.+.+++..++++. ++|+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dll--~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADLL--RKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHHH--HHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 45689999999988643 3344554321 222 24455565543345555555 599986
No 52
>PLN00135 malate dehydrogenase
Probab=43.63 E-value=22 Score=37.36 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||+||++.|... .+|.+|.++---. --.++++++.+..++..++++. ++|+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHH
Confidence 45689999999998653 2344554321100 1234455666522345555555 599987
No 53
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=43.09 E-value=91 Score=22.95 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHhhhHHHHHHhCC
Q 007089 177 HTEGAVRGGLLREEDVNLALAYTITVQMRLGM 208 (618)
Q Consensus 177 ~l~~av~~G~i~~~~ld~av~RiL~~k~~lGl 208 (618)
.....++.-.-+.+.|+..|..+|.+|..+|=
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg~ 43 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLGG 43 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC
Confidence 34556677788999999999999999999873
No 54
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=42.72 E-value=1.2e+02 Score=28.20 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=35.6
Q ss_pred ccccCCCCCeeEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCCc-cccccccccccCCCCeEEEEEEecc
Q 007089 508 VAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPN-KQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 508 ~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~-k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
++...|++...+.|-|+|+ .....|++|...-... ..|- -.-+.-=.+.|.|||+..|=+.++.
T Consensus 59 VsN~lwEn~~~~~IcV~I~-----s~~~~i~fy~~~~~~~~~~~~sd~a~~~i~ftv~~ge~v~VGm~~~~ 124 (146)
T PF06510_consen 59 VSNHLWENGADVPICVTIS-----SSSDSIEFYTGDYDSYITGPGSDSARQSICFTVEPGESVKVGMIFDS 124 (146)
T ss_pred eecccccccCCceEEEEEe-----cCCCcEEEEecCCCccccCCccccccceEEEEecCCCeeEEEEEEec
Confidence 3343444311356777776 2356789998543321 2221 0111111245899999999999987
No 55
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=42.72 E-value=46 Score=35.46 Aligned_cols=54 Identities=20% Similarity=0.436 Sum_probs=32.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------eeeC-CCCC---CCCccccc--ccc---ccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLV---------FAKP-PAGN---WSPNKQLI--GFK---KVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQl---------Y~~~-~~~~---~~P~k~L~--gF~---kv~l~pGes~~V~~~l~~ 576 (618)
+++++++|||.|+-+ |.| |+.. -... ..|. +|. |-. ..-++|||+++|+++...
T Consensus 283 ~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 689999999999754 333 1111 0111 2332 222 222 224899999999998754
No 56
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.61 E-value=25 Score=37.24 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||++|++.|... .+|.+|.++ -..-. ++.+++.+.+++..++++. ++|+|+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHH
Confidence 45689999999988643 244455443 12222 3445555543224555444 599987
No 57
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.16 E-value=26 Score=37.09 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH--HHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ--QELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q--~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..+.+|+||++.|... .++.+|..+.-.... .++.+.+.+..++..++++. .+|+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45679999999988643 233444332111111 23445555543334555555 489976
No 58
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.71 E-value=83 Score=26.74 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEE
Q 007089 320 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 374 (618)
Q Consensus 320 a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvV 374 (618)
..+..+.+|+||++++.- ...-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 445678999999998632 3455678888888888887654
No 59
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=38.86 E-value=3.3e+02 Score=30.24 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=58.4
Q ss_pred HHHHcCCCceEEecccCCCC-----cccccCHHHHHHHHHhhcCCCcEEEccchhhh-hccccccccCCHHHHHHHHHHH
Q 007089 101 ACVVEGKVASVMCSYNQVNG-----KPTCADPDILKNTIHGQWRLDGYIVSDCDSVG-VLYNTQHYTRTPEEAAADAIKA 174 (618)
Q Consensus 101 ~ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~-~~~~~~~~~~~~~~a~~~al~a 174 (618)
..|+++ .-..|.+.+++.| ..|+.|+.+++.+|..=+.. |+-...-++.- ..+-+.+...+..|++..-|.|
T Consensus 57 ~~iD~~-l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~l~~~-g~r~A~pGEFt~RAflngk~dL~qaEai~~li~a 134 (449)
T PRK05291 57 EVIDEV-LVLYFPAPNSFTGEDVVEIQCHGGPAVLNLILELLLAL-GARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDA 134 (449)
T ss_pred cccceE-EEEEecCCCCccCCcEEEEECCCCHHHHHHHHHHHHHc-CCEEccCccchHHHHhcCCcCHHHHHHHHHHHhC
Confidence 445665 5678888888877 47999999998888754433 56666655421 1112233334456666666666
Q ss_pred --HHHHHHHHHC--CCCCHHHHHHHHhhhHHHHHHh
Q 007089 175 --AIHTEGAVRG--GLLREEDVNLALAYTITVQMRL 206 (618)
Q Consensus 175 --~~~l~~av~~--G~i~~~~ld~av~RiL~~k~~l 206 (618)
...+..|+++ |.++ +.++.--.+++++.-.+
T Consensus 135 ~t~~~~~~al~~l~G~l~-~~~~~~r~~l~~~~a~i 169 (449)
T PRK05291 135 KTEAAARLALRQLQGALS-KLINELREELLELLALV 169 (449)
T ss_pred CCHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHh
Confidence 3333444433 5443 33444444455554443
No 60
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=37.81 E-value=11 Score=34.68 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=30.0
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEEcCceeec
Q 007089 323 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 323 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
..++||++|++.|... .+|.+|.++ =....+ +.+++.+.+.+. ++++. .+|+|+
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~~-~vivv-tNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPDA-IVIVV-TNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTTS-EEEE--SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCcc-EEEEe-CCcHHH
Confidence 4678999999888643 344455432 122223 344555545443 43434 489986
No 61
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=37.06 E-value=23 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=16.9
Q ss_pred CCccccccccccccCCCCeEEEEEEecc
Q 007089 549 SPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 549 ~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
.|.-.|+ .++.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 4444454 3688999999999998754
No 62
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=36.69 E-value=33 Score=36.12 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=34.4
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCC-C-hhHHHHHHHHHHhcCCCEEEEEEcCceeecc
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLL-P-GRQQELVSRVAKASRGPVVLVLMCGGPVDVS 384 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L-p-~~q~~Li~~v~~~~~k~vVvVl~~g~P~~l~ 384 (618)
+..+.||+||++.|..+ ..|-+|.+|-- + .-..++.+++.+.+. ..++++. .+|+|+.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEe-cCcHHHH
Confidence 45679999999998654 44555644311 1 112345566666544 4554444 5899873
No 63
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=36.62 E-value=90 Score=35.03 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=37.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccc-cccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~-gF~kv~l~pGes~~V~~~l~~ 576 (618)
.-+++++|+|+|...-+.+.-.|.. |..-..|..+.. -+-.-.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 3489999999999977777666643 111011111111 122234899999999999987
No 64
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=36.30 E-value=1.3e+02 Score=30.22 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=32.5
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCCcccccccc-ccccCCCCeEEEEEEe
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFK-KVHVTAGALQSVRLDI 574 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~-kv~l~pGes~~V~~~l 574 (618)
.++++|+|+|+. .-.+|.-+.+.... ..| +.-.= -..|+||+++.|++..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~---fivtPPl~rl~pg~~q~vRii~ 92 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKL---LLVTPPVARVEPGQSQQVRFIL 92 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCC---EEEcCCeEEECCCCceEEEEEE
Confidence 578888999976 47889888754321 111 11111 1358999999999864
No 65
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=36.18 E-value=90 Score=30.63 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=31.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccc----------cccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----------VHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~k----------v~l~pGes~~V~~~l~~ 576 (618)
..++++.|+=++. +++=+|+|+--.|.+..+.+-. |..| ..|.|||..+++|+|..
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 4566666664444 4477777776667664322221 3333 35899999999999887
No 66
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.84 E-value=37 Score=35.68 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||++|++.|..+. .|.+|..+.|=..-.+ +++++.+.++ +.++++. .+|+|+
T Consensus 64 ~~~~~aDivvitaG~~~k---pg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~ivv-sNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSID---PGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVIILI-TNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCCC---CCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEe-cCcHHH
Confidence 457899999999886432 2333211222222233 3445555443 4554444 599987
No 67
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=35.04 E-value=34 Score=36.24 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..+++|+||+..|... .++.+|.++ -..-. ++++++.+.+++..|+++. .+|+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 45678999999988643 233344322 12222 3445555543344665555 499987
No 68
>PLN02303 urease
Probab=34.89 E-value=49 Score=39.30 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=31.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCC-----ccccccc-------cccccCCCCeEEEEEE
Q 007089 519 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 573 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 573 (618)
=+++++|+|||+|. ||+=-....-...| ...=.|| .-|..+|||+++|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 36899999999998 88733222111111 1111122 3466799999999985
No 69
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=34.59 E-value=26 Score=38.08 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..+++|++|++.|... .+|.+|.++ -..-.+ +.+++.+..++..|+++. ++|+|+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv 175 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADL--LDINGQIFADQGKALNAVASKNCKVLVV-GNPCNT 175 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHH
Confidence 45789999999988643 344455432 122223 334444423334554444 599987
No 70
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=32.38 E-value=90 Score=20.80 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHhhhH
Q 007089 176 IHTEGAVRGGLLREEDVNLALAYTI 200 (618)
Q Consensus 176 ~~l~~av~~G~i~~~~ld~av~RiL 200 (618)
..|.+...+|.|+++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5678899999999999999988886
No 71
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.14 E-value=1.8e+02 Score=32.06 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=32.9
Q ss_pred cchHHHHHHhhc--CCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 315 QLIGAAEVAARQ--ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 315 ~~~~~a~~~a~~--aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
..+.+|++.+.. .|++|++=|.- ...+|. +=+..++++++++ ++.|+|.- . |.=.|.
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGG--------S~eDL~-~Fn~e~v~~ai~~-~~~Pvis~-I-GHE~D~ 237 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGG--------SLEDLW-AFNDEAVARAIAA-SRIPVISA-V-GHETDF 237 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCC--------CHHHhh-ccCcHHHHHHHHc-CCCCEEEe-c-cCCCCc
Confidence 344555555554 59898875532 222221 2246679999986 67886643 2 555554
No 72
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=32.13 E-value=2.6e+02 Score=23.76 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=31.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
..+++++++|+.+.+-.=--.+|==+..+- ..|. .-.++++.|.|+|+.+|+..-+.
T Consensus 25 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 25 LLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred eEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 689999999999887443333333344443 2222 25688899999999998887665
No 73
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=31.86 E-value=3.3e+02 Score=23.29 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=38.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeee----CCCCC-CCCccccccccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAK----PPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~----~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
..++++.|+|+.+.+ ++|+.+ +..+- ..|. .-.++.+.|.++|+.+|...-+.
T Consensus 33 ~~~~~~~l~N~~~~~----~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 33 LLEAQATLSNTSSKP----LTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred eEEEEEEEEeCCCCC----EEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 589999999999876 455444 34432 2232 57788999999999988876554
No 74
>PRK05086 malate dehydrogenase; Provisional
Probab=31.69 E-value=39 Score=35.55 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~---~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..+.+|+||+++|.... ++.+|.++ |.. --.++++++.+.+. +.++++. .+|+|+
T Consensus 65 ~~l~~~DiVIitaG~~~~---~~~~R~dl-l~~N~~i~~~ii~~i~~~~~-~~ivivv-sNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVARK---PGMDRSDL-FNVNAGIVKNLVEKVAKTCP-KACIGII-TNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCCC---CCCCHHHH-HHHHHHHHHHHHHHHHHhCC-CeEEEEc-cCchHH
Confidence 445789999999996532 23344332 111 23456667766543 3444444 589964
No 75
>PRK13556 azoreductase; Provisional
Probab=31.52 E-value=1.1e+02 Score=29.85 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=26.9
Q ss_pred hHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHH
Q 007089 317 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 365 (618)
Q Consensus 317 ~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~ 365 (618)
.++..+..+.||.+|++.=.. ++.+|..=..+|..+..
T Consensus 80 ~~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhc
Confidence 345556788999999975321 46678877788888764
No 76
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=31.20 E-value=65 Score=24.31 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=16.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEE
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLV 539 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQl 539 (618)
.++.+++|+|+|...... |++
T Consensus 13 ~v~Yti~v~N~g~~~a~~-v~v 33 (53)
T TIGR01451 13 TITYTITVTNNGNVPATN-VVV 33 (53)
T ss_pred EEEEEEEEEECCCCceEe-EEE
Confidence 799999999999977543 444
No 77
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=31.02 E-value=1e+02 Score=31.36 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=34.9
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCCcc----cccccccc-ccCCCCeEEEEEEec
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK----QLIGFKKV-HVTAGALQSVRLDIH 575 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k----~L~gF~kv-~l~pGes~~V~~~l~ 575 (618)
.++++|+|+|+. .-.||..+.+......|.+ .+.-.=-+ .|+||+.+.|+|...
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 578888999986 5899998865332222321 13222233 389999999997654
No 78
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=30.87 E-value=79 Score=27.91 Aligned_cols=64 Identities=14% Similarity=0.283 Sum_probs=36.2
Q ss_pred EEEEeCCCCCcceEEEEeeeCCCCCCCCcccccccccccc-CCCCeEEEEE-EeccCCc--ee-EEeCCCCEEe
Q 007089 523 VDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHV-TAGALQSVRL-DIHVCKH--LS-VVDKFGIRRI 591 (618)
Q Consensus 523 v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l-~pGes~~V~~-~l~~~~~--ls-~~d~~~~~~~ 591 (618)
|+|+|.=+..|.-.|+||-+...- .+.-+.+.+..+ ..+.+.+++| .|++ -. ++ +.|++++..+
T Consensus 1 V~V~gi~~~~G~v~v~ly~~~~~f----~~~~~~~~~~~~~~~~~~~~~~f~~lp~-G~YAi~v~hD~N~Ngkl 69 (112)
T PF09912_consen 1 VTVEGIRNDKGQVRVALYNSAEGF----ENKKKALKRVKVPAKGGTVTITFEDLPP-GTYAIAVFHDENGNGKL 69 (112)
T ss_pred CEecccCCCCcEEEEEEEcChhch----hhcccceeEEEEEcCCCcEEEEECCCCC-ccEEEEEEEeCCCCCcC
Confidence 567888888999999999763221 122233334333 3345667777 4554 33 33 5577655433
No 79
>PRK13555 azoreductase; Provisional
Probab=30.69 E-value=1.1e+02 Score=30.23 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=25.7
Q ss_pred hHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHH
Q 007089 317 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 365 (618)
Q Consensus 317 ~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~ 365 (618)
..+..+..+.||.+|++.=.. ++.+|..-+..|..+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~~-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPLW-----------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCcc-----------cccchHHHHHHHHHHhc
Confidence 345567788999999875321 45677777777777653
No 80
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=30.51 E-value=59 Score=26.14 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.9
Q ss_pred eEEEEEEEEeCCCCCcce
Q 007089 518 SLGLHVDIKNTGDMAGTH 535 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~e 535 (618)
.++.+++|+|+|+.....
T Consensus 42 ~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATN 59 (76)
T ss_pred EEEEEEEEEECCCCeeEe
Confidence 799999999999988655
No 81
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=30.21 E-value=1.8e+02 Score=26.58 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=38.3
Q ss_pred eEEEEEEEEeCCCCCcc-eEEEEeeeCCCCC------CCCccccccc--cccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGT-HTLLVFAKPPAGN------WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~-evvQlY~~~~~~~------~~P~k~L~gF--~kv~l~pGes~~V~~~l~~ 576 (618)
.+.++.+++|+++++=. =.+++-+.+..+. -.|..-|..- .+..|+||++.++++.+..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 68999999999987522 1344445554442 2443333332 2446999999999998874
No 82
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=30.15 E-value=3.7e+02 Score=28.00 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=40.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCcccccc-ccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIG-FKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~g-F~kv~l~pGes~~V~~~l~~ 576 (618)
.+-|.|+|+|...-.-=..-+..+..+. ..+.|.+.= ++.=.|.||++.+|-+..+.
T Consensus 203 ~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~ 260 (289)
T PF09544_consen 203 WVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA 260 (289)
T ss_pred eEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC
Confidence 5789999999555444444566666554 445555444 67777999999999999986
No 83
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=29.93 E-value=1.4e+02 Score=32.41 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=26.7
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccccccCCCCeEEEEEEecc
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
.+++.|+|.|..... ..+| ... + .++ +|=.|.||.|.+++++|.+
T Consensus 52 ~~~f~V~N~~~~~~E--fe~~--~~~------~-vv~-e~EnIaPG~s~~l~~~L~p 96 (375)
T PRK10378 52 KTQFIIQNHSQKALE--WEIL--KGV------M-VVE-ERENIAPGFSQKMTANLQP 96 (375)
T ss_pred CEEEEEEeCCCCcce--EEee--ccc------c-ccc-cccccCCCCceEEEEecCC
Confidence 378888999988743 2222 110 0 011 1235899999988777644
No 84
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=29.69 E-value=1.1e+02 Score=27.60 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCEEEEEec
Q 007089 318 GAAEVAARQADATVLVMG 335 (618)
Q Consensus 318 ~~a~~~a~~aD~vIv~vg 335 (618)
.++.+.++.+|++++++.
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456677889999998874
No 85
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=29.59 E-value=1.1e+02 Score=28.30 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.2
Q ss_pred cccccccccccCCCCeEEEEEEecc
Q 007089 552 KQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 552 k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
..|.+-.++.|.|||+++++++++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 3577778888999999999999986
No 86
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=29.42 E-value=66 Score=34.97 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCCEEEEEEc-CceeecccccC-------CCCccEEEEccCCCcchhHHHHHHHcCC
Q 007089 357 QELVSRVAKASRGPVVLVLMC-GGPVDVSFAKN-------DPRIGAILWVGYPGQAGGAAIADVLFGR 416 (618)
Q Consensus 357 ~~Li~~v~~~~~k~vVvVl~~-g~P~~l~~~~~-------~~~v~AiL~a~~~G~e~g~AlAdVL~G~ 416 (618)
.++|+++.+.+++||++|.+| |+++..-++.. ...|+++|...-|=.-+..|+..+++|+
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~ 174 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD 174 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence 356776666568899999987 67765432221 1368888876666555678999889998
No 87
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=29.42 E-value=59 Score=30.50 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.6
Q ss_pred cccCCCCeEEEEEEecc
Q 007089 560 VHVTAGALQSVRLDIHV 576 (618)
Q Consensus 560 v~l~pGes~~V~~~l~~ 576 (618)
+.|+||+|.++++.++.
T Consensus 116 v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 116 VTLAPGKSGELVVVFTG 132 (158)
T ss_pred eEeCCCCcEEEEEEecC
Confidence 46999999999888874
No 88
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=29.38 E-value=1.2e+02 Score=30.74 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=34.4
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccc---ccccccc-ccCCCCeEEEEEEec
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQ---LIGFKKV-HVTAGALQSVRLDIH 575 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~---L~gF~kv-~l~pGes~~V~~~l~ 575 (618)
.++++|+|+|+. .-.||..+........|.+. +.-.=-+ .|+||+.+.|+|-..
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 99 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT 99 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence 578889999986 58999998643322223211 1211222 389999999998654
No 89
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=29.22 E-value=41 Score=35.16 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=32.8
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||++|+++|... .++.+|.++..-. --.++.+++.+.+ .+.++++. ++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~-sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVV-SNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc-cChHHH
Confidence 35789999999998653 2455564432111 1234455555544 34554444 599987
No 90
>PLN02602 lactate dehydrogenase
Probab=28.99 E-value=45 Score=35.77 Aligned_cols=54 Identities=28% Similarity=0.422 Sum_probs=31.7
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 323 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 323 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
..++||+||++.|..+ .+|.+|.++- ..-. ++++++.+.+. +.++++. .+|+++
T Consensus 102 ~~~daDiVVitAG~~~---k~g~tR~dll--~~N~~I~~~i~~~I~~~~p-~~ivivv-tNPvdv 159 (350)
T PLN02602 102 VTAGSDLCIVTAGARQ---IPGESRLNLL--QRNVALFRKIIPELAKYSP-DTILLIV-SNPVDV 159 (350)
T ss_pred HhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHHHCC-CeEEEEe-cCchHH
Confidence 4689999999988653 2445564332 2222 34455555443 4555555 499977
No 91
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.34 E-value=52 Score=34.67 Aligned_cols=55 Identities=25% Similarity=0.396 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..+.+|+||++.|... .+|.+|.++ =..- .+.++++.+.++ ..++++. .||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p-~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACP-KALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEEEc-cCchhh
Confidence 45789999999998653 234445432 1222 234455555443 4555444 599976
No 92
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=28.28 E-value=38 Score=37.52 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEEcCceeecc
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 384 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~k~vVvVl~~g~P~~l~ 384 (618)
+..++||+||+..|... .+|.+|.++- ..-. ++.+++.+..+++.++++. ++|+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl--~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLL--DINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHH
Confidence 45689999999888643 3455664431 2222 3344554412334554444 6999873
No 93
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=28.25 E-value=91 Score=27.22 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=27.4
Q ss_pred eEEEEEEEEeCCCCCcce-EEEEeeeCCCCC-CCCccc----cccccccccCCCCeEEEEEEecc
Q 007089 518 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGN-WSPNKQ----LIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~e-vvQlY~~~~~~~-~~P~k~----L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
-+.|+|+|+|+|+-+-.- ..+..+.+.... -.+... ...+--..|+||++.+..+-...
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 589999999999865321 113334343332 112111 11144467999999887765443
No 94
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.93 E-value=2.6e+02 Score=30.92 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=32.1
Q ss_pred chHHHHHHhhc---CCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEcCceeecc
Q 007089 316 LIGAAEVAARQ---ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 384 (618)
Q Consensus 316 ~~~~a~~~a~~---aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~g~P~~l~ 384 (618)
.+.+|++.+.. .|++||+=|.- ...+|. +=+...+++++++ ++.|||.- -|.=.|..
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGGG--------s~eDL~-~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGGG--------SLEDLW-SFNDEKVARAIFL-SKIPIISA--VGHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCCC--------CHHHhh-hcCcHHHHHHHHc-CCCCEEEe--cCcCCCcc
Confidence 34445544433 68898875532 222221 2246678899985 67887643 26655543
No 95
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=27.55 E-value=48 Score=34.75 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=30.3
Q ss_pred hhcCCEEEEEecCCcccccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEEcCceeecc
Q 007089 324 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDVS 384 (618)
Q Consensus 324 a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~v~~~~~k~vVvVl~~g~P~~l~ 384 (618)
++.+|++|+++|.... ++.+|.+ |-....+ .++++.+.++ +.++++. .+|+++-
T Consensus 67 ~~~aDiVIitag~p~~---~~~sR~~--l~~~N~~iv~~i~~~I~~~~p-~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPRK---PGMSRED--LLSMNAGIVREVTGRIMEHSP-NPIIVVV-SNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCCC---cCCCHHH--HHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHH
Confidence 5789999999997542 2333422 2222333 3445555443 4454444 4899873
No 96
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=27.43 E-value=65 Score=33.97 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..+.||++|++.|... .++.+|.++ =..- .+..+++.+.++ ..++++. .+|+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~~p-~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAESCP-KAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHhCC-CeEEEEe-cCchhh
Confidence 45789999999998653 245555443 1222 234445555433 4554444 599984
No 97
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=26.27 E-value=2.2e+02 Score=28.59 Aligned_cols=54 Identities=7% Similarity=-0.042 Sum_probs=33.2
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEecc
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
.++++|+|+++. .--.||..+.+.... ..|.--.=- =..|+||++++++|-...
T Consensus 44 ~~sv~i~N~~~~-~p~LvQsWv~~~~~~~~~pFivtPP--lfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSAS-NVFLIQSWVANADGSRSTDFIITPP--LFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCCC-ccEEEEEEEecCCCCccCCEEEcCC--eEEECCCCceEEEEEECC
Confidence 688999999852 235699999765432 111100000 024899999999986653
No 98
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=25.84 E-value=2.2e+02 Score=26.98 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=29.7
Q ss_pred hHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEE
Q 007089 317 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 376 (618)
Q Consensus 317 ~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~ 376 (618)
..+....++.+|++|+++.... | +.....++++.+.. .+.|+|+|++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~-----g-------~~~~~~~~l~~~~~-~~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAND-----G-------IQPQTEEHLKILRE-LGIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTT-----B-------STHHHHHHHHHHHH-TT-SEEEEEE
T ss_pred eecccceecccccceeeeeccc-----c-------cccccccccccccc-cccceEEeee
Confidence 3455667889999999985431 1 23344556666554 5788887776
No 99
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=25.57 E-value=2.3e+02 Score=28.31 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=33.6
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccc-cccCCCCeEEEEEEec
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK-VHVTAGALQSVRLDIH 575 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~k-v~l~pGes~~V~~~l~ 575 (618)
.++++|+|+|+. .-.||..+........+...+.---= ..|+||++++|+|...
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~ 90 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS 90 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 678999999986 58899998754321101000111111 2489999999998654
No 100
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=24.98 E-value=3.4e+02 Score=23.65 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=15.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCC
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPA 545 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~ 545 (618)
...+-++++|+|+ +.+.-+.++-|.
T Consensus 15 ~~a~y~ti~N~g~---~~~~L~~v~s~~ 39 (110)
T PF04314_consen 15 VTAAYFTITNNGD---QDDRLVGVSSPA 39 (110)
T ss_dssp EEEEEEEEE-CSS---SEEEEEEEE-TT
T ss_pred cEEEEEEEEeCCC---CCeEEEEEEcCC
Confidence 3567799999997 345555666553
No 101
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=24.93 E-value=1.8e+02 Score=29.12 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=33.7
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCCcccccccccc-ccCCCCeEEEEEEec
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIH 575 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv-~l~pGes~~V~~~l~ 575 (618)
.++++|+|+|+. .-.||..+.+.... ..+...+.-.=-+ .|+||+++.++|...
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 678899999986 68999988753211 0111112211222 489999999997654
No 102
>PTZ00325 malate dehydrogenase; Provisional
Probab=24.43 E-value=59 Score=34.41 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=33.1
Q ss_pred HHHhhcCCEEEEEecCCcccccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 321 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 321 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~---~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
.+..+.+|+||+++|... .++.+|.++ |.. .-.++++++.+...+ -|+++. .+|++.
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~-~iviv~-SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPK-AIVGIV-SNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCC-eEEEEe-cCcHHH
Confidence 356789999999998643 223344332 222 234566677665433 444444 589887
No 103
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=24.19 E-value=55 Score=34.24 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 322 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 322 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
+..++||++|++.|... .+|.+|.++ -..- .++++++.+.+ ...++++. ++|.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~-p~~~vivv-sNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSG-FDGIFLVA-TNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCeEEEEe-CCHHHH
Confidence 35689999999988643 245556432 1222 23455565543 34554444 599876
No 104
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=24.08 E-value=2.1e+02 Score=28.86 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=34.9
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccc----cccCCCCeEEEEEEec
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----VHVTAGALQSVRLDIH 575 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~k----v~l~pGes~~V~~~l~ 575 (618)
.++++|+|+++. --.||..+.+......|.+.=.-|-= ..|+||+.++++|...
T Consensus 27 ~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~ 84 (233)
T PRK15246 27 AQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS 84 (233)
T ss_pred eEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence 578899999976 68999999653322222211011221 2489999999998764
No 105
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=23.89 E-value=73 Score=33.45 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=30.0
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCC-C-hhHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 323 AARQADATVLVMGLDQSIEAEFIDRAGLLL-P-GRQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 323 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L-p-~~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
..+.||++|+++|... .++.+|.++-. . ..-.+.++++.+.++ ..++++. ++|+++
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~-~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVV-TNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCchHH
Confidence 4789999999998653 23444433200 0 011233444554443 3444444 489876
No 106
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=23.84 E-value=2.4e+02 Score=28.45 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=34.9
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEecc
Q 007089 520 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 576 (618)
Q Consensus 520 ~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 576 (618)
.++++|+|+++.. -.||..+.+.... ..|.--+--. ..|+||+.++++|....
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPl--fRlep~~~~~lRI~~~~ 98 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPL--FRLEANQQSQLRIVRTG 98 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCe--EEECCCCceEEEEEECC
Confidence 5788889999764 9999999865432 1111111000 23899999999987653
No 107
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=23.59 E-value=1.7e+02 Score=27.63 Aligned_cols=54 Identities=20% Similarity=0.060 Sum_probs=32.0
Q ss_pred cchHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHH--hcCCCEEEEEEcCc
Q 007089 315 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK--ASRGPVVLVLMCGG 379 (618)
Q Consensus 315 ~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~--~~~k~vVvVl~~g~ 379 (618)
+...+..+....||.+|++.-.. +...|+.=..+|..+.. -.+||++++..+|+
T Consensus 57 ~~~~~~~~~i~~AD~iIi~tP~Y-----------~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~ 112 (174)
T TIGR03566 57 PDAERILQAIESADLLVVGSPVY-----------RGSYTGLFKHLFDLVDPNALIGKPVLLAATGGS 112 (174)
T ss_pred HHHHHHHHHHHHCCEEEEECCcC-----------cCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCC
Confidence 34566777888999999865322 23456655566665421 13567666655443
No 108
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.40 E-value=1e+02 Score=20.86 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHhhhHHHHHHhCCC
Q 007089 184 GGLLREEDVNLALAYTITVQMRLGMF 209 (618)
Q Consensus 184 ~G~i~~~~ld~av~RiL~~k~~lGl~ 209 (618)
.|.|+.+.+-+++.||+..+.+-|-.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999887653
No 109
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=22.87 E-value=2.1e+02 Score=28.09 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEcCceeecccccCCCCccEEEE
Q 007089 318 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILW 397 (618)
Q Consensus 318 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~g~P~~l~~~~~~~~v~AiL~ 397 (618)
++.++....||.+|++... + |+..|..-...|..++.+ +| +-=.. ..+|.-+.. .-++++.
T Consensus 79 d~l~~ef~aAD~vVi~~PM---~--------Nf~iPa~LK~yiD~i~~a-Gk-TFkYt-e~Gp~GLl~-----gKKv~~l 139 (202)
T COG1182 79 DKLLEEFLAADKVVIAAPM---Y--------NFNIPAQLKAYIDHIAVA-GK-TFKYT-ENGPVGLLT-----GKKVLIL 139 (202)
T ss_pred HHHHHHHHhcCeEEEEecc---c--------ccCCCHHHHHHHHHHhcC-Cc-eEEec-cCCcccccC-----CceEEEE
Confidence 3445566789999987642 2 688999999999999864 54 33332 346766532 2345555
Q ss_pred ccCCC
Q 007089 398 VGYPG 402 (618)
Q Consensus 398 a~~~G 402 (618)
.-.+|
T Consensus 140 ~srGG 144 (202)
T COG1182 140 TSRGG 144 (202)
T ss_pred ECCCC
Confidence 44444
No 110
>PRK00170 azoreductase; Reviewed
Probab=22.65 E-value=1.6e+02 Score=28.26 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=26.3
Q ss_pred chHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHH
Q 007089 316 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 364 (618)
Q Consensus 316 ~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~ 364 (618)
...+..+....||.+|++.=.. .+.+|+.-..+|+.+.
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP~y-----------~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAPMY-----------NFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHHHHHHHCCEEEEeeccc-----------ccCCcHHHHHHHHhhe
Confidence 3456677788999999975322 3566777777777765
No 111
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=22.64 E-value=1.5e+02 Score=25.56 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEE
Q 007089 318 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 376 (618)
Q Consensus 318 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~ 376 (618)
.+..+....+|++|+++..+. .+.....++++.+. .++|+++|++
T Consensus 71 ~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 71 RKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 345666788999999985321 11234567778884 5678888875
No 112
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=22.43 E-value=29 Score=37.24 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEEEEEeCCCCCc-------------ceEEEEeeeCCCCC---CCCccccccccc---cccCCCCeEEEEEEeccCCc
Q 007089 519 LGLHVDIKNTGDMAG-------------THTLLVFAKPPAGN---WSPNKQLIGFKK---VHVTAGALQSVRLDIHVCKH 579 (618)
Q Consensus 519 ~~v~v~VtNtG~~~G-------------~evvQlY~~~~~~~---~~P~k~L~gF~k---v~l~pGes~~V~~~l~~~~~ 579 (618)
..|+++|||||+.+= .+=|++|-....-. .++.-.+-+... +.|+||||.+++|.+-...|
T Consensus 40 t~VkA~VTNtG~e~l~llK~ntilD~~Pv~kv~V~~~g~~V~F~Gi~~~~~~~~L~~d~F~~L~pG~sve~~fDiA~~~d 119 (359)
T PF02102_consen 40 TRVKATVTNTGSEDLKLLKYNTILDSAPVKKVSVYKDGKEVPFTGIRLRYDTSGLTEDAFQTLAPGESVEVEFDIAETHD 119 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEeCCCcceEEEeeceecCCCceeEEEEEcCCcccccccEEEEEecCCCCHHHceecCCCCeEEEEEcchheee
Confidence 479999999998652 12244442110000 233222222222 34899999999999877556
Q ss_pred ee
Q 007089 580 LS 581 (618)
Q Consensus 580 ls 581 (618)
|+
T Consensus 120 Ls 121 (359)
T PF02102_consen 120 LS 121 (359)
T ss_dssp --
T ss_pred cC
Confidence 64
No 113
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=22.16 E-value=77 Score=21.16 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=12.5
Q ss_pred HHHHHHHcCCCceEEecc
Q 007089 98 PFKACVVEGKVASVMCSY 115 (618)
Q Consensus 98 pF~~ai~~g~~~~vM~sy 115 (618)
-++.++..| +.+||+-|
T Consensus 12 ~~~~~l~~G-VDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLG-VDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT--SEEEES-
T ss_pred HHHHHHHcC-CCEeeCCC
Confidence 468888888 99999965
No 114
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=20.81 E-value=1e+02 Score=32.22 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=30.9
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEEcCceeecc
Q 007089 323 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 384 (618)
Q Consensus 323 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~k~vVvVl~~g~P~~l~ 384 (618)
.++.+|++|++.|... .+|.+|.++ -..-. ++.+++.+.+. ..++++. ++|+++.
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~-~~~vivv-sNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGF-DGIFLVA-SNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEEEe-cChHHHH
Confidence 3579999999998653 245455432 12222 33444554443 4454444 5999873
No 115
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.33 E-value=2.6e+02 Score=26.48 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=23.4
Q ss_pred hcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEcCceeec
Q 007089 325 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 383 (618)
Q Consensus 325 ~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~g~P~~l 383 (618)
..+|+++|.+|. +.|..++.+.....+.+ +++..|..++.
T Consensus 100 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~ 139 (172)
T PF03808_consen 100 SGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF 139 (172)
T ss_pred cCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence 356777776653 35777777776655444 23344666654
No 116
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=20.27 E-value=3.4e+02 Score=22.50 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=39.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccccccCCCCeEEEEEEeccCCceeEEeC
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 585 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~ 585 (618)
.+++.+++.|.+.....-.+++.+..+.... ... .-..+.+..++...+.+++.. .....|+.
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKK--VVT--QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEE--EEE--EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCE--EEE--eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 5777777799999999999999888875431 101 112334566666666455554 45567766
No 117
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=20.24 E-value=4.5e+02 Score=22.48 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=41.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceEE
Q 007089 518 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 597 (618)
Q Consensus 518 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~ 597 (618)
.+..++.|+|.+.....-.||++..... . .-..++||||...++ +..+..+..+ ..-....|+|.
T Consensus 25 ~i~gTi~V~n~~~~~~~itV~i~~~g~~-----v------~tftV~pG~S~S~T~--~~~~sI~I~~--~~~g~~~G~~C 89 (92)
T PF13157_consen 25 SISGTIYVYNDTGSGNPITVTILQNGTA-----V------NTFTVQPGNSRSFTV--RDFQSIQIVT--TPTGTIEGEFC 89 (92)
T ss_pred EEEEEEEEEECCCCCCCEEEEEEECCcE-----E------eEEEECCCceEEEEe--ccceEEEEEe--CCCcEEEEEEE
Confidence 5788999999998888888898833221 1 113479999975443 3223344444 22223468887
Q ss_pred EE
Q 007089 598 LH 599 (618)
Q Consensus 598 i~ 599 (618)
+.
T Consensus 90 ~~ 91 (92)
T PF13157_consen 90 IT 91 (92)
T ss_pred EE
Confidence 65
Done!