Query 007090
Match_columns 618
No_of_seqs 434 out of 3077
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 18:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339 ATP-dependent RNA heli 100.0 4E-103 8E-108 781.9 40.6 595 1-613 1-610 (731)
2 KOG0331 ATP-dependent RNA heli 100.0 3.2E-79 6.9E-84 634.4 34.9 427 180-608 16-478 (519)
3 KOG0336 ATP-dependent RNA heli 100.0 1.8E-77 3.9E-82 583.7 31.7 425 181-608 168-602 (629)
4 KOG0333 U5 snRNP-like RNA heli 100.0 7.7E-77 1.7E-81 596.6 36.8 492 102-605 128-652 (673)
5 PTZ00110 helicase; Provisional 100.0 5.5E-73 1.2E-77 619.7 50.8 438 170-609 74-515 (545)
6 KOG0334 RNA helicase [RNA proc 100.0 2.5E-74 5.4E-79 625.2 37.4 441 166-607 305-749 (997)
7 KOG0341 DEAD-box protein abstr 100.0 4.9E-74 1.1E-78 556.2 21.9 426 179-608 124-559 (610)
8 PLN00206 DEAD-box ATP-dependen 100.0 1.1E-67 2.4E-72 576.4 48.5 431 172-605 66-502 (518)
9 KOG0330 ATP-dependent RNA heli 100.0 1.6E-68 3.5E-73 519.8 31.2 366 223-596 59-425 (476)
10 KOG0335 ATP-dependent RNA heli 100.0 1.4E-66 3E-71 530.7 31.5 394 212-607 61-473 (482)
11 KOG0338 ATP-dependent RNA heli 100.0 3E-66 6.5E-71 518.2 29.9 375 224-602 180-562 (691)
12 COG0513 SrmB Superfamily II DN 100.0 7.5E-65 1.6E-69 550.3 42.6 373 225-602 29-408 (513)
13 KOG0328 Predicted ATP-dependen 100.0 2.8E-62 6.1E-67 456.7 28.3 376 221-603 23-398 (400)
14 KOG0342 ATP-dependent RNA heli 100.0 5.1E-61 1.1E-65 481.0 30.6 362 223-587 80-446 (543)
15 PRK04837 ATP-dependent RNA hel 100.0 1.2E-59 2.6E-64 504.0 40.7 366 225-593 8-377 (423)
16 PRK10590 ATP-dependent RNA hel 100.0 1E-58 2.2E-63 500.0 43.2 365 226-593 2-367 (456)
17 KOG0340 ATP-dependent RNA heli 100.0 7.3E-60 1.6E-64 454.2 28.3 365 223-594 5-377 (442)
18 PRK11776 ATP-dependent RNA hel 100.0 2.4E-58 5.2E-63 499.3 42.8 359 225-592 4-363 (460)
19 PRK04537 ATP-dependent RNA hel 100.0 2.9E-58 6.3E-63 505.2 43.7 366 225-593 9-379 (572)
20 KOG0345 ATP-dependent RNA heli 100.0 1.7E-58 3.8E-63 459.5 34.9 356 225-583 4-369 (567)
21 PRK11634 ATP-dependent RNA hel 100.0 6.6E-58 1.4E-62 504.8 43.4 361 224-592 5-366 (629)
22 PRK11192 ATP-dependent RNA hel 100.0 2.5E-57 5.4E-62 488.3 43.8 364 226-592 2-366 (434)
23 KOG0343 RNA Helicase [RNA proc 100.0 3.1E-58 6.6E-63 464.5 30.6 363 222-589 66-434 (758)
24 KOG0326 ATP-dependent RNA heli 100.0 4E-59 8.8E-64 442.4 17.5 367 225-600 85-451 (459)
25 PRK01297 ATP-dependent RNA hel 100.0 3E-55 6.5E-60 476.2 45.2 379 222-603 84-469 (475)
26 KOG0348 ATP-dependent RNA heli 100.0 4E-56 8.6E-61 448.0 30.0 367 221-589 132-565 (708)
27 KOG0346 RNA helicase [RNA proc 100.0 3.6E-56 7.7E-61 439.0 28.8 367 225-593 19-425 (569)
28 PTZ00424 helicase 45; Provisio 100.0 1.7E-54 3.6E-59 462.8 40.8 371 223-600 26-396 (401)
29 KOG0347 RNA helicase [RNA proc 100.0 2.9E-56 6.4E-61 450.2 23.0 370 221-594 177-586 (731)
30 KOG0344 ATP-dependent RNA heli 100.0 1.3E-54 2.8E-59 445.1 27.8 401 204-606 111-523 (593)
31 KOG0332 ATP-dependent RNA heli 100.0 4.5E-52 9.9E-57 402.5 30.2 372 223-604 88-471 (477)
32 KOG0337 ATP-dependent RNA heli 100.0 5.3E-53 1.2E-57 414.8 18.9 363 224-592 20-382 (529)
33 KOG0327 Translation initiation 100.0 1.6E-51 3.4E-56 402.8 25.2 367 224-600 25-392 (397)
34 KOG4284 DEAD box protein [Tran 100.0 5.3E-51 1.1E-55 418.0 23.8 353 220-580 20-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 2.5E-48 5.5E-53 436.9 39.0 345 231-591 20-401 (742)
36 PLN03137 ATP-dependent DNA hel 100.0 5.7E-47 1.2E-51 422.3 38.8 344 226-588 436-797 (1195)
37 KOG0350 DEAD-box ATP-dependent 100.0 2E-47 4.3E-52 382.8 25.4 353 233-592 145-554 (620)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.6E-46 3.4E-51 406.4 34.5 327 242-589 6-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 4E-44 8.7E-49 397.5 38.8 330 236-588 13-353 (607)
40 PRK02362 ski2-like helicase; P 100.0 6.9E-44 1.5E-48 405.4 34.0 338 226-579 2-398 (737)
41 PRK13767 ATP-dependent helicas 100.0 2.5E-43 5.4E-48 404.3 38.6 357 232-591 18-412 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 2.7E-43 5.9E-48 392.1 35.4 322 243-588 9-341 (591)
43 PRK00254 ski2-like helicase; P 100.0 4.4E-43 9.6E-48 397.8 35.1 339 226-579 2-389 (720)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3E-42 6.5E-47 380.0 33.3 315 243-577 12-390 (844)
45 TIGR00580 mfd transcription-re 100.0 1.8E-41 3.9E-46 384.7 39.9 360 193-578 390-770 (926)
46 KOG0329 ATP-dependent RNA heli 100.0 3.7E-44 8E-49 330.7 14.1 335 223-600 40-378 (387)
47 PRK10689 transcription-repair 100.0 1.3E-40 2.8E-45 385.5 41.1 358 194-577 540-918 (1147)
48 PRK01172 ski2-like helicase; P 100.0 2.5E-41 5.5E-46 381.9 34.0 333 226-578 2-378 (674)
49 PRK10917 ATP-dependent DNA hel 100.0 6.3E-40 1.4E-44 367.8 41.4 335 234-594 248-605 (681)
50 TIGR00643 recG ATP-dependent D 100.0 2.7E-39 5.9E-44 360.4 39.6 344 236-604 225-592 (630)
51 PHA02653 RNA helicase NPH-II; 100.0 7.7E-40 1.7E-44 359.5 30.8 312 250-580 167-516 (675)
52 COG1201 Lhr Lhr-like helicases 100.0 5.1E-39 1.1E-43 352.5 33.8 340 232-577 8-361 (814)
53 PRK09401 reverse gyrase; Revie 100.0 6.5E-39 1.4E-43 372.1 34.4 297 244-564 78-431 (1176)
54 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.5E-39 9.7E-44 361.7 30.8 303 252-580 7-338 (819)
55 PRK09751 putative ATP-dependen 100.0 3.9E-38 8.4E-43 366.2 34.5 307 267-578 1-383 (1490)
56 COG0514 RecQ Superfamily II DN 100.0 2.9E-38 6.4E-43 334.8 30.3 328 243-590 13-349 (590)
57 PRK11664 ATP-dependent RNA hel 100.0 1.2E-38 2.7E-43 359.1 28.7 303 252-580 10-341 (812)
58 PRK12898 secA preprotein trans 100.0 5.1E-38 1.1E-42 339.6 30.2 319 246-582 102-590 (656)
59 PRK14701 reverse gyrase; Provi 100.0 2.1E-37 4.6E-42 366.4 32.1 330 236-588 68-466 (1638)
60 PHA02558 uvsW UvsW helicase; P 100.0 3.2E-37 6.8E-42 335.6 29.6 301 245-567 112-442 (501)
61 TIGR01587 cas3_core CRISPR-ass 100.0 7.6E-37 1.7E-41 321.4 30.4 302 264-579 1-337 (358)
62 COG1111 MPH1 ERCC4-like helica 100.0 5.5E-36 1.2E-40 303.5 33.6 323 245-578 13-481 (542)
63 PRK09200 preprotein translocas 100.0 2.3E-36 5E-41 333.5 30.1 319 247-582 78-545 (790)
64 TIGR03714 secA2 accessory Sec 100.0 5.8E-36 1.3E-40 327.2 30.3 321 247-582 68-541 (762)
65 KOG0349 Putative DEAD-box RNA 100.0 3.5E-37 7.7E-42 303.4 18.3 276 299-576 287-613 (725)
66 TIGR01054 rgy reverse gyrase. 100.0 1.7E-35 3.7E-40 344.2 34.2 291 236-549 67-409 (1171)
67 TIGR00963 secA preprotein tran 100.0 1.4E-35 3.1E-40 321.9 30.7 319 246-582 55-521 (745)
68 COG1202 Superfamily II helicas 100.0 3.1E-36 6.6E-41 306.7 22.2 337 226-577 195-552 (830)
69 PRK13766 Hef nuclease; Provisi 100.0 1.5E-34 3.2E-39 332.9 37.4 324 245-579 13-480 (773)
70 COG1204 Superfamily II helicas 100.0 6.4E-35 1.4E-39 324.8 27.7 336 231-578 15-408 (766)
71 PRK11131 ATP-dependent RNA hel 100.0 3E-34 6.4E-39 328.3 31.2 302 251-580 78-413 (1294)
72 KOG0354 DEAD-box like helicase 100.0 1.7E-33 3.6E-38 301.8 27.3 323 245-579 60-530 (746)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 9.7E-33 2.1E-37 287.6 30.3 290 251-562 1-357 (357)
74 KOG2340 Uncharacterized conser 100.0 1.2E-33 2.6E-38 285.4 20.5 349 244-593 213-683 (698)
75 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-32 2.3E-37 316.8 27.7 304 253-580 73-406 (1283)
76 TIGR00603 rad25 DNA repair hel 100.0 2.8E-32 6E-37 298.5 29.0 322 246-594 254-625 (732)
77 KOG0926 DEAH-box RNA helicase 100.0 3.1E-33 6.8E-38 293.5 17.6 298 252-578 261-704 (1172)
78 KOG0351 ATP-dependent DNA heli 100.0 7.5E-32 1.6E-36 302.0 27.9 331 241-590 258-604 (941)
79 COG1205 Distinct helicase fami 100.0 4.5E-31 9.7E-36 298.2 31.4 333 232-576 55-420 (851)
80 KOG0352 ATP-dependent DNA heli 100.0 9.5E-32 2.1E-36 265.1 21.2 335 236-589 7-373 (641)
81 PRK04914 ATP-dependent helicas 100.0 1.7E-30 3.7E-35 294.0 33.5 334 246-592 151-617 (956)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 9.8E-31 2.1E-35 283.0 26.7 332 244-584 107-497 (1230)
83 KOG0353 ATP-dependent DNA heli 100.0 4.3E-30 9.2E-35 249.8 23.7 363 229-609 75-497 (695)
84 cd00268 DEADc DEAD-box helicas 100.0 1.3E-29 2.9E-34 244.6 25.2 202 227-431 1-202 (203)
85 PRK13104 secA preprotein trans 100.0 2.2E-29 4.8E-34 277.4 29.1 329 247-593 82-606 (896)
86 PRK05580 primosome assembly pr 100.0 9.8E-29 2.1E-33 276.3 32.7 313 246-579 143-550 (679)
87 PRK12899 secA preprotein trans 100.0 8.7E-29 1.9E-33 271.9 30.1 179 195-385 33-228 (970)
88 PLN03142 Probable chromatin-re 100.0 9.1E-29 2E-33 280.8 30.7 332 246-590 168-613 (1033)
89 COG1061 SSL2 DNA or RNA helica 100.0 5.3E-29 1.1E-33 265.9 25.1 294 246-564 35-376 (442)
90 PRK09694 helicase Cas3; Provis 100.0 1.6E-27 3.6E-32 268.2 37.3 352 245-606 284-725 (878)
91 PF06862 DUF1253: Protein of u 100.0 2.1E-28 4.7E-33 253.0 27.7 294 297-591 36-428 (442)
92 PRK12904 preprotein translocas 100.0 1.6E-28 3.5E-33 270.5 27.9 318 247-582 81-577 (830)
93 COG1200 RecG RecG-like helicas 100.0 1.8E-27 3.8E-32 251.9 33.9 336 234-595 249-608 (677)
94 KOG0385 Chromatin remodeling c 100.0 1.8E-28 4E-33 257.6 25.3 331 246-593 166-616 (971)
95 COG1643 HrpA HrpA-like helicas 100.0 1.8E-28 3.8E-33 271.8 26.5 306 251-579 54-388 (845)
96 PRK12906 secA preprotein trans 100.0 2.5E-28 5.4E-33 267.9 26.1 319 246-582 79-557 (796)
97 KOG0922 DEAH-box RNA helicase 100.0 9.9E-28 2.1E-32 251.2 25.2 304 251-580 55-392 (674)
98 COG1197 Mfd Transcription-repa 100.0 1.1E-26 2.5E-31 258.7 33.9 387 194-605 534-945 (1139)
99 KOG0923 mRNA splicing factor A 100.0 2.9E-28 6.2E-33 252.2 18.5 311 248-579 266-607 (902)
100 KOG0387 Transcription-coupled 100.0 5E-27 1.1E-31 248.1 27.0 353 246-616 204-699 (923)
101 KOG0951 RNA helicase BRR2, DEA 100.0 5.6E-27 1.2E-31 256.7 25.4 341 231-579 295-703 (1674)
102 TIGR00595 priA primosomal prot 100.0 2.5E-26 5.4E-31 248.3 29.6 287 266-575 1-378 (505)
103 PRK13107 preprotein translocas 100.0 1.1E-26 2.3E-31 255.4 24.5 318 247-582 82-595 (908)
104 KOG0924 mRNA splicing factor A 99.9 1.7E-26 3.7E-31 239.3 19.7 308 249-578 358-697 (1042)
105 KOG0947 Cytoplasmic exosomal R 99.9 6.7E-26 1.4E-30 243.0 24.3 311 246-578 296-723 (1248)
106 KOG0384 Chromodomain-helicase 99.9 7.8E-27 1.7E-31 256.4 17.6 375 184-579 310-812 (1373)
107 PRK11448 hsdR type I restricti 99.9 3.1E-25 6.7E-30 256.9 30.3 303 246-565 412-801 (1123)
108 COG4098 comFA Superfamily II D 99.9 1.9E-24 4.1E-29 208.9 29.6 315 246-589 96-426 (441)
109 KOG0948 Nuclear exosomal RNA h 99.9 1.2E-25 2.6E-30 235.5 17.3 319 246-585 128-547 (1041)
110 KOG1002 Nucleotide excision re 99.9 3.1E-25 6.6E-30 222.7 18.3 360 182-578 143-749 (791)
111 KOG0950 DNA polymerase theta/e 99.9 3E-25 6.6E-30 239.9 19.6 343 231-588 206-621 (1008)
112 COG4581 Superfamily II RNA hel 99.9 1.2E-24 2.6E-29 242.7 23.1 312 246-577 118-536 (1041)
113 KOG0920 ATP-dependent RNA heli 99.9 1.5E-24 3.4E-29 239.4 23.6 314 249-579 175-545 (924)
114 PF00270 DEAD: DEAD/DEAH box h 99.9 1.5E-24 3.3E-29 202.8 20.0 166 249-420 1-169 (169)
115 KOG0389 SNF2 family DNA-depend 99.9 8.9E-24 1.9E-28 223.4 23.5 321 247-579 399-889 (941)
116 PRK12900 secA preprotein trans 99.9 3E-23 6.4E-28 229.1 23.0 141 452-595 579-732 (1025)
117 KOG0392 SNF2 family DNA-depend 99.9 4.1E-23 8.9E-28 226.4 22.0 324 247-578 975-1454(1549)
118 COG1110 Reverse gyrase [DNA re 99.9 3E-21 6.5E-26 210.1 31.8 284 238-548 73-416 (1187)
119 COG1203 CRISPR-associated heli 99.9 2.8E-22 6.1E-27 226.7 24.9 330 248-586 196-558 (733)
120 KOG0925 mRNA splicing factor A 99.9 7.3E-22 1.6E-26 198.5 20.1 328 224-578 24-387 (699)
121 PRK12326 preprotein translocas 99.9 4.6E-21 9.9E-26 206.4 26.5 317 246-581 77-550 (764)
122 KOG0391 SNF2 family DNA-depend 99.9 5.8E-21 1.3E-25 207.5 24.5 110 470-579 1276-1388(1958)
123 TIGR00631 uvrb excinuclease AB 99.9 3.8E-20 8.3E-25 204.9 30.5 133 454-588 425-563 (655)
124 TIGR01407 dinG_rel DnaQ family 99.9 7.4E-20 1.6E-24 211.2 33.9 346 233-592 232-830 (850)
125 KOG0390 DNA repair protein, SN 99.9 1.4E-20 3.1E-25 204.8 26.0 326 246-578 237-707 (776)
126 TIGR00348 hsdR type I site-spe 99.9 1E-19 2.3E-24 203.8 29.2 299 248-564 239-634 (667)
127 PRK13103 secA preprotein trans 99.9 4E-20 8.7E-25 203.9 23.4 329 247-594 82-611 (913)
128 KOG1000 Chromatin remodeling p 99.9 1.4E-19 3E-24 182.6 24.2 315 246-578 197-602 (689)
129 PRK12903 secA preprotein trans 99.8 1.8E-19 3.9E-24 196.7 25.8 329 247-594 78-560 (925)
130 COG4096 HsdR Type I site-speci 99.8 4.4E-20 9.5E-25 198.4 20.5 297 246-565 164-526 (875)
131 smart00487 DEXDc DEAD-like hel 99.8 2.2E-19 4.7E-24 171.7 22.1 187 243-435 4-192 (201)
132 KOG0388 SNF2 family DNA-depend 99.8 2.4E-19 5.1E-24 187.2 20.6 128 453-580 1026-1156(1185)
133 PRK05298 excinuclease ABC subu 99.8 1.9E-18 4.2E-23 192.9 29.4 147 455-603 430-591 (652)
134 COG1198 PriA Primosomal protei 99.8 6.9E-18 1.5E-22 185.3 28.0 312 246-579 197-604 (730)
135 KOG0386 Chromatin remodeling c 99.8 2.9E-19 6.3E-24 193.8 14.2 316 246-578 393-838 (1157)
136 CHL00122 secA preprotein trans 99.8 4.2E-18 9.2E-23 187.3 23.4 274 247-537 76-491 (870)
137 PRK07246 bifunctional ATP-depe 99.8 7.5E-17 1.6E-21 183.9 32.0 328 247-592 245-799 (820)
138 COG0556 UvrB Helicase subunit 99.8 4.6E-17 1E-21 166.6 24.4 164 404-577 387-556 (663)
139 KOG1123 RNA polymerase II tran 99.8 3.6E-18 7.8E-23 172.5 15.7 307 246-580 301-655 (776)
140 PRK12902 secA preprotein trans 99.8 1.2E-16 2.7E-21 175.4 26.3 274 247-537 85-506 (939)
141 KOG0949 Predicted helicase, DE 99.7 6.5E-17 1.4E-21 174.8 19.7 159 247-415 511-673 (1330)
142 TIGR03117 cas_csf4 CRISPR-asso 99.7 2.2E-15 4.7E-20 164.6 31.7 117 469-587 469-626 (636)
143 cd00079 HELICc Helicase superf 99.7 3.9E-17 8.4E-22 145.5 13.5 119 455-574 12-131 (131)
144 PRK08074 bifunctional ATP-depe 99.7 1.2E-15 2.5E-20 177.3 28.7 124 469-592 751-909 (928)
145 KOG0953 Mitochondrial RNA heli 99.7 3E-16 6.4E-21 161.1 19.0 277 263-588 192-486 (700)
146 KOG4439 RNA polymerase II tran 99.7 3.1E-16 6.6E-21 164.7 18.2 110 469-578 745-858 (901)
147 COG4889 Predicted helicase [Ge 99.7 3.8E-17 8.1E-22 174.4 10.9 358 225-594 140-617 (1518)
148 PF00271 Helicase_C: Helicase 99.7 5.6E-17 1.2E-21 130.6 9.1 78 488-565 1-78 (78)
149 cd00046 DEXDc DEAD-like helica 99.7 9.4E-16 2E-20 137.8 17.0 144 263-413 1-144 (144)
150 KOG1015 Transcription regulato 99.7 8E-16 1.7E-20 165.4 17.8 119 470-588 1142-1289(1567)
151 PRK12901 secA preprotein trans 99.7 3.4E-15 7.3E-20 165.7 21.6 127 452-581 609-744 (1112)
152 COG0553 HepA Superfamily II DN 99.7 1.2E-14 2.5E-19 171.2 25.2 325 246-579 337-823 (866)
153 KOG4150 Predicted ATP-dependen 99.6 3E-15 6.6E-20 153.4 14.9 346 241-596 280-660 (1034)
154 COG1199 DinG Rad3-related DNA 99.6 6E-14 1.3E-18 159.2 26.8 124 470-596 479-637 (654)
155 PF04851 ResIII: Type III rest 99.6 3.5E-15 7.7E-20 141.1 11.5 153 247-415 3-184 (184)
156 TIGR00604 rad3 DNA repair heli 99.6 6.4E-13 1.4E-17 151.0 29.5 74 244-322 7-84 (705)
157 PRK11747 dinG ATP-dependent DN 99.6 1.2E-12 2.5E-17 147.7 29.8 118 470-591 534-689 (697)
158 smart00490 HELICc helicase sup 99.6 1.7E-14 3.6E-19 117.0 9.4 81 485-565 2-82 (82)
159 TIGR02562 cas3_yersinia CRISPR 99.5 2.3E-12 5E-17 144.3 21.9 308 248-565 409-880 (1110)
160 KOG0951 RNA helicase BRR2, DEA 99.5 3.1E-12 6.7E-17 142.3 19.5 311 247-586 1143-1502(1674)
161 PF02399 Herpes_ori_bp: Origin 99.4 2.6E-11 5.7E-16 132.7 22.5 289 263-577 50-387 (824)
162 PRK14873 primosome assembly pr 99.4 4.3E-11 9.4E-16 132.8 24.4 277 271-578 169-539 (665)
163 COG0653 SecA Preprotein transl 99.4 1.8E-11 3.9E-16 134.8 17.7 317 247-579 78-546 (822)
164 PF00176 SNF2_N: SNF2 family N 99.3 7.8E-12 1.7E-16 128.0 13.0 158 251-415 1-174 (299)
165 COG0610 Type I site-specific r 99.3 3.3E-10 7.1E-15 131.4 25.1 298 263-576 274-651 (962)
166 KOG0921 Dosage compensation co 99.3 2.6E-11 5.6E-16 130.9 13.1 312 254-578 385-774 (1282)
167 PF07652 Flavi_DEAD: Flaviviru 99.2 4.5E-11 9.8E-16 104.4 7.5 134 262-416 4-139 (148)
168 KOG1016 Predicted DNA helicase 99.2 1.6E-09 3.4E-14 115.5 18.5 107 471-577 720-848 (1387)
169 smart00489 DEXDc3 DEAD-like he 99.0 2.8E-09 6E-14 107.9 14.0 73 247-321 8-84 (289)
170 smart00488 DEXDc2 DEAD-like he 99.0 2.8E-09 6E-14 107.9 14.0 73 247-321 8-84 (289)
171 KOG1001 Helicase-like transcri 99.0 1.2E-09 2.6E-14 120.7 9.5 107 471-577 540-649 (674)
172 PF07517 SecA_DEAD: SecA DEAD- 99.0 2.7E-08 5.8E-13 98.1 17.2 128 246-385 76-210 (266)
173 TIGR00596 rad1 DNA repair prot 98.6 6.7E-07 1.4E-11 101.4 16.4 70 345-414 4-73 (814)
174 KOG1131 RNA polymerase II tran 98.5 3E-05 6.5E-10 80.5 22.0 81 470-550 530-624 (755)
175 PRK15483 type III restriction- 98.4 2.7E-06 5.9E-11 96.6 15.0 74 520-593 501-583 (986)
176 PF13086 AAA_11: AAA domain; P 98.4 4.9E-06 1.1E-10 81.6 14.2 73 247-320 1-75 (236)
177 COG3587 Restriction endonuclea 98.4 1E-05 2.3E-10 88.6 16.5 75 519-593 482-568 (985)
178 PF13307 Helicase_C_2: Helicas 98.3 1.3E-06 2.8E-11 81.1 6.9 78 470-549 9-92 (167)
179 PF13604 AAA_30: AAA domain; P 98.3 3E-06 6.5E-11 80.8 9.2 123 247-412 1-130 (196)
180 PF13872 AAA_34: P-loop contai 98.3 6.5E-06 1.4E-10 81.5 11.5 170 230-418 26-225 (303)
181 KOG1802 RNA helicase nonsense 98.2 9.5E-06 2.1E-10 86.3 11.6 85 239-334 402-486 (935)
182 KOG0952 DNA/RNA helicase MER3/ 98.2 4.1E-07 8.8E-12 101.2 0.9 259 248-522 928-1207(1230)
183 PF12340 DUF3638: Protein of u 98.1 6.3E-05 1.4E-09 72.0 14.4 151 226-386 4-186 (229)
184 PF02562 PhoH: PhoH-like prote 98.1 1.1E-05 2.5E-10 76.4 9.3 141 246-411 3-154 (205)
185 KOG0383 Predicted helicase [Ge 98.0 2.3E-07 5.1E-12 101.5 -5.9 78 455-533 615-696 (696)
186 TIGR00376 DNA helicase, putati 97.9 8.1E-05 1.8E-09 83.5 13.2 67 246-320 156-223 (637)
187 KOG1803 DNA helicase [Replicat 97.9 2.7E-05 5.9E-10 82.7 8.2 66 246-319 184-250 (649)
188 PRK10536 hypothetical protein; 97.9 0.00031 6.7E-09 68.6 14.0 141 244-409 56-209 (262)
189 KOG1132 Helicase of the DEAD s 97.9 6.3E-05 1.4E-09 83.0 10.2 103 471-574 562-719 (945)
190 TIGR01447 recD exodeoxyribonuc 97.9 0.00017 3.7E-09 79.9 13.8 140 250-410 148-293 (586)
191 PRK10875 recD exonuclease V su 97.8 0.0002 4.4E-09 79.5 13.2 141 249-411 154-300 (615)
192 PF09848 DUF2075: Uncharacteri 97.8 7.9E-05 1.7E-09 78.1 9.4 108 264-399 3-117 (352)
193 TIGR01448 recD_rel helicase, p 97.7 0.00034 7.3E-09 79.8 13.3 130 246-411 322-451 (720)
194 PF13871 Helicase_C_4: Helicas 97.6 0.00022 4.8E-09 70.5 9.2 84 511-594 52-146 (278)
195 COG3421 Uncharacterized protei 97.5 0.00031 6.8E-09 74.4 8.4 158 267-434 2-184 (812)
196 KOG1805 DNA replication helica 97.5 0.0006 1.3E-08 76.2 10.9 139 228-386 654-810 (1100)
197 PF13245 AAA_19: Part of AAA d 97.5 0.00058 1.3E-08 54.0 7.7 53 262-318 10-62 (76)
198 PF13401 AAA_22: AAA domain; P 97.4 0.00063 1.4E-08 60.1 8.2 18 261-278 3-20 (131)
199 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0015 3.2E-08 74.9 13.2 122 246-410 351-474 (744)
200 smart00492 HELICc3 helicase su 97.4 0.0015 3.2E-08 58.6 10.2 68 482-549 3-79 (141)
201 PRK13889 conjugal transfer rel 97.4 0.0017 3.7E-08 75.6 13.0 123 246-411 345-469 (988)
202 PF05970 PIF1: PIF1-like helic 97.3 0.00077 1.7E-08 70.8 8.9 60 247-314 1-66 (364)
203 KOG0298 DEAD box-containing he 97.3 0.00071 1.5E-08 77.6 8.4 154 261-419 373-556 (1394)
204 PRK08181 transposase; Validate 97.3 0.0057 1.2E-07 61.1 13.7 113 257-418 101-214 (269)
205 PF00580 UvrD-helicase: UvrD/R 97.2 0.0011 2.4E-08 68.1 8.7 123 248-382 1-125 (315)
206 smart00491 HELICc2 helicase su 97.2 0.0021 4.5E-08 57.7 9.0 68 482-549 3-80 (142)
207 PRK14974 cell division protein 97.1 0.0045 9.7E-08 63.8 11.8 132 263-425 141-276 (336)
208 PRK04296 thymidine kinase; Pro 97.1 0.0031 6.7E-08 59.8 9.9 110 263-413 3-115 (190)
209 PRK13826 Dtr system oriT relax 97.1 0.0084 1.8E-07 70.5 14.9 124 246-412 380-505 (1102)
210 PRK12723 flagellar biosynthesi 97.0 0.0085 1.8E-07 62.9 12.8 131 262-424 174-309 (388)
211 COG1875 NYN ribonuclease and A 97.0 0.0027 6E-08 64.0 8.2 142 244-410 225-385 (436)
212 TIGR02760 TraI_TIGR conjugativ 97.0 0.059 1.3E-06 68.1 21.7 237 247-520 429-686 (1960)
213 PRK06526 transposase; Provisio 96.9 0.0091 2E-07 59.2 11.4 47 370-416 157-204 (254)
214 COG1419 FlhF Flagellar GTP-bin 96.9 0.026 5.6E-07 58.6 14.4 137 260-428 201-339 (407)
215 cd00009 AAA The AAA+ (ATPases 96.8 0.015 3.2E-07 51.8 11.3 17 262-278 19-35 (151)
216 PRK14722 flhF flagellar biosyn 96.8 0.008 1.7E-07 62.6 10.5 131 261-425 136-270 (374)
217 PF00448 SRP54: SRP54-type pro 96.7 0.012 2.6E-07 56.0 10.4 131 264-424 3-136 (196)
218 KOG1133 Helicase of the DEAD s 96.6 0.018 3.9E-07 62.6 11.5 104 470-577 629-779 (821)
219 PF14617 CMS1: U3-containing 9 96.6 0.005 1.1E-07 60.3 6.7 86 296-382 124-211 (252)
220 PRK07952 DNA replication prote 96.5 0.062 1.3E-06 52.9 13.7 49 370-418 160-210 (244)
221 PRK05642 DNA replication initi 96.5 0.012 2.5E-07 57.9 8.7 45 371-415 96-141 (234)
222 PRK08116 hypothetical protein; 96.4 0.075 1.6E-06 53.3 14.3 48 370-418 176-226 (268)
223 PHA02533 17 large terminase pr 96.4 0.02 4.3E-07 63.0 10.6 149 246-413 58-210 (534)
224 PRK06921 hypothetical protein; 96.4 0.05 1.1E-06 54.4 12.5 18 261-278 116-133 (266)
225 PRK11889 flhF flagellar biosyn 96.3 0.072 1.6E-06 55.5 13.5 129 263-425 242-375 (436)
226 smart00382 AAA ATPases associa 96.3 0.0092 2E-07 52.6 6.3 42 262-311 2-43 (148)
227 PF03354 Terminase_1: Phage Te 96.3 0.0088 1.9E-07 65.4 7.2 150 250-411 1-161 (477)
228 TIGR01547 phage_term_2 phage t 96.3 0.021 4.5E-07 61.0 9.9 145 264-425 3-152 (396)
229 PRK05703 flhF flagellar biosyn 96.3 0.14 3E-06 54.9 15.9 129 262-424 221-354 (424)
230 PRK08727 hypothetical protein; 96.2 0.018 4E-07 56.5 8.4 47 371-417 92-140 (233)
231 PRK08084 DNA replication initi 96.2 0.02 4.3E-07 56.3 8.5 44 372-415 97-142 (235)
232 cd01120 RecA-like_NTPases RecA 96.2 0.055 1.2E-06 49.3 10.9 45 370-414 83-137 (165)
233 PRK06893 DNA replication initi 96.2 0.018 3.9E-07 56.4 8.0 46 371-416 90-137 (229)
234 PRK06835 DNA replication prote 96.1 0.099 2.1E-06 53.9 13.5 48 370-417 244-293 (329)
235 PRK14087 dnaA chromosomal repl 96.1 0.043 9.4E-07 59.2 11.3 111 262-417 141-253 (450)
236 PRK12377 putative replication 95.9 0.081 1.8E-06 52.2 11.3 49 370-418 161-211 (248)
237 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.036 7.9E-07 53.9 8.9 43 373-415 91-134 (226)
238 PRK11054 helD DNA helicase IV; 95.9 0.032 6.9E-07 63.3 9.4 74 244-323 193-266 (684)
239 KOG0989 Replication factor C, 95.8 0.029 6.2E-07 55.6 7.5 47 367-414 124-170 (346)
240 COG1484 DnaC DNA replication p 95.8 0.059 1.3E-06 53.5 9.9 109 258-414 101-210 (254)
241 PRK14712 conjugal transfer nic 95.8 0.08 1.7E-06 64.6 12.4 66 246-315 834-901 (1623)
242 PRK00149 dnaA chromosomal repl 95.7 0.075 1.6E-06 57.7 11.2 47 372-418 211-259 (450)
243 COG2805 PilT Tfp pilus assembl 95.7 0.022 4.8E-07 56.3 6.3 53 219-290 100-152 (353)
244 PRK13709 conjugal transfer nic 95.7 0.091 2E-06 65.0 12.6 65 246-314 966-1032(1747)
245 PRK08903 DnaA regulatory inact 95.7 0.049 1.1E-06 53.2 8.7 43 372-415 90-133 (227)
246 PF05127 Helicase_RecD: Helica 95.6 0.0042 9.2E-08 57.5 0.8 124 266-414 1-124 (177)
247 PRK12727 flagellar biosynthesi 95.6 0.28 6E-06 53.3 14.5 131 260-425 348-482 (559)
248 TIGR00362 DnaA chromosomal rep 95.5 0.071 1.5E-06 57.1 10.0 47 372-418 199-247 (405)
249 KOG1513 Nuclear helicase MOP-3 95.5 0.019 4.1E-07 63.2 5.4 82 513-594 850-942 (1300)
250 PRK10919 ATP-dependent DNA hel 95.5 0.035 7.6E-07 63.2 8.0 71 247-323 2-72 (672)
251 PRK06731 flhF flagellar biosyn 95.5 0.25 5.5E-06 49.3 13.1 131 261-425 74-209 (270)
252 cd01124 KaiC KaiC is a circadi 95.5 0.067 1.4E-06 50.3 8.5 48 265-321 2-49 (187)
253 TIGR00064 ftsY signal recognit 95.4 0.23 4.9E-06 49.9 12.6 132 263-425 73-214 (272)
254 PRK14723 flhF flagellar biosyn 95.4 0.13 2.8E-06 58.4 11.7 130 262-424 185-317 (767)
255 KOG0741 AAA+-type ATPase [Post 95.4 0.092 2E-06 55.7 9.6 66 221-291 212-283 (744)
256 TIGR01074 rep ATP-dependent DN 95.3 0.087 1.9E-06 60.3 10.5 70 248-323 2-71 (664)
257 TIGR01075 uvrD DNA helicase II 95.3 0.04 8.6E-07 63.5 7.6 72 246-323 3-74 (715)
258 PF00308 Bac_DnaA: Bacterial d 95.3 0.058 1.3E-06 52.3 7.6 48 370-417 95-144 (219)
259 PTZ00293 thymidine kinase; Pro 95.2 0.12 2.6E-06 49.3 9.2 38 262-307 4-41 (211)
260 PRK12422 chromosomal replicati 95.2 0.19 4.1E-06 54.2 11.8 49 371-419 201-251 (445)
261 PRK11773 uvrD DNA-dependent he 95.1 0.054 1.2E-06 62.5 7.9 72 246-323 8-79 (721)
262 PRK14086 dnaA chromosomal repl 95.1 0.14 3E-06 56.7 10.5 48 371-418 376-425 (617)
263 PRK00771 signal recognition pa 94.9 0.37 7.9E-06 51.7 12.9 129 263-424 96-228 (437)
264 COG1435 Tdk Thymidine kinase [ 94.9 0.25 5.3E-06 46.1 9.9 89 263-383 5-93 (201)
265 PRK08939 primosomal protein Dn 94.9 0.33 7.2E-06 49.6 12.0 50 370-419 215-267 (306)
266 COG2256 MGS1 ATPase related to 94.8 0.13 2.8E-06 53.1 8.7 16 263-278 49-64 (436)
267 PRK06995 flhF flagellar biosyn 94.8 0.16 3.5E-06 54.8 10.0 21 261-281 255-275 (484)
268 PRK10917 ATP-dependent DNA hel 94.8 0.091 2E-06 60.1 8.6 96 449-544 288-389 (681)
269 PRK00411 cdc6 cell division co 94.8 0.14 3.1E-06 54.5 9.6 16 263-278 56-71 (394)
270 PHA02544 44 clamp loader, smal 94.8 0.27 5.9E-06 50.6 11.4 39 372-410 100-138 (316)
271 KOG0733 Nuclear AAA ATPase (VC 94.7 0.083 1.8E-06 57.1 7.3 53 223-278 506-561 (802)
272 TIGR01425 SRP54_euk signal rec 94.7 0.34 7.4E-06 51.5 11.9 60 263-333 101-162 (429)
273 PRK09183 transposase/IS protei 94.6 0.13 2.7E-06 51.4 8.2 22 257-278 97-118 (259)
274 TIGR02785 addA_Gpos recombinat 94.6 0.23 5E-06 60.6 11.9 124 247-383 1-126 (1232)
275 TIGR02760 TraI_TIGR conjugativ 94.6 0.18 3.9E-06 64.0 11.1 63 246-314 1018-1084(1960)
276 PRK05707 DNA polymerase III su 94.6 0.22 4.7E-06 51.5 9.9 40 248-288 4-47 (328)
277 PRK05580 primosome assembly pr 94.6 0.18 4E-06 57.5 10.2 94 452-546 171-266 (679)
278 PF13173 AAA_14: AAA domain 94.6 0.38 8.2E-06 42.2 10.2 38 372-412 61-98 (128)
279 PRK14088 dnaA chromosomal repl 94.5 0.28 6E-06 53.0 11.0 49 372-420 194-244 (440)
280 PRK11331 5-methylcytosine-spec 94.5 0.11 2.5E-06 55.1 7.6 32 248-279 180-211 (459)
281 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.53 1.2E-05 42.9 11.0 52 370-421 93-146 (159)
282 PHA03368 DNA packaging termina 94.4 0.52 1.1E-05 52.2 12.6 136 260-414 252-391 (738)
283 COG1444 Predicted P-loop ATPas 94.4 0.35 7.6E-06 54.5 11.6 143 245-414 212-357 (758)
284 PRK14721 flhF flagellar biosyn 94.4 0.32 6.9E-06 51.7 10.8 134 260-425 189-324 (420)
285 PRK12726 flagellar biosynthesi 94.4 0.56 1.2E-05 48.9 12.1 130 261-424 205-339 (407)
286 TIGR02881 spore_V_K stage V sp 94.3 0.27 5.9E-06 49.1 9.8 16 263-278 43-58 (261)
287 PRK08769 DNA polymerase III su 94.2 0.55 1.2E-05 48.1 11.9 43 246-289 3-52 (319)
288 KOG0298 DEAD box-containing he 94.2 0.043 9.2E-07 63.7 4.0 104 469-576 1220-1324(1394)
289 PF00004 AAA: ATPase family as 94.2 0.12 2.6E-06 45.2 6.2 17 372-388 58-74 (132)
290 TIGR03689 pup_AAA proteasome A 94.2 0.3 6.6E-06 53.2 10.4 17 262-278 216-232 (512)
291 TIGR01073 pcrA ATP-dependent D 94.2 0.13 2.8E-06 59.4 8.1 72 246-323 3-74 (726)
292 PF05621 TniB: Bacterial TniB 94.1 0.38 8.2E-06 48.3 10.1 55 263-321 62-119 (302)
293 TIGR00595 priA primosomal prot 94.1 0.18 3.9E-06 55.4 8.6 91 453-544 7-99 (505)
294 COG0593 DnaA ATPase involved i 94.1 0.27 5.8E-06 51.7 9.4 47 372-418 175-223 (408)
295 PRK08533 flagellar accessory p 94.0 0.66 1.4E-05 45.4 11.6 53 260-321 22-74 (230)
296 PHA03333 putative ATPase subun 94.0 1.3 2.9E-05 49.3 14.7 59 260-325 185-243 (752)
297 PRK12402 replication factor C 93.9 0.47 1E-05 49.2 11.0 40 371-412 124-163 (337)
298 PRK07003 DNA polymerase III su 93.9 0.78 1.7E-05 51.9 12.8 41 371-413 118-158 (830)
299 PRK13342 recombination factor 93.8 0.48 1E-05 50.8 11.1 15 264-278 38-52 (413)
300 TIGR00643 recG ATP-dependent D 93.8 0.19 4.2E-06 56.9 8.4 94 451-544 264-363 (630)
301 PRK13833 conjugal transfer pro 93.8 0.24 5.1E-06 50.8 8.2 58 248-311 129-187 (323)
302 PTZ00112 origin recognition co 93.7 0.77 1.7E-05 52.6 12.5 17 371-387 868-884 (1164)
303 PRK14964 DNA polymerase III su 93.6 0.36 7.7E-06 52.4 9.5 45 370-416 114-158 (491)
304 COG1474 CDC6 Cdc6-related prot 93.6 1.4 3E-05 46.2 13.7 23 256-278 34-58 (366)
305 PRK12323 DNA polymerase III su 93.6 0.69 1.5E-05 51.5 11.7 41 370-411 122-162 (700)
306 COG4962 CpaF Flp pilus assembl 93.5 0.13 2.9E-06 52.1 5.7 59 244-311 154-213 (355)
307 PRK07764 DNA polymerase III su 93.5 0.2 4.3E-06 58.0 7.8 44 370-415 118-161 (824)
308 TIGR00708 cobA cob(I)alamin ad 93.4 0.37 8E-06 44.5 8.0 52 370-421 95-148 (173)
309 COG3972 Superfamily I DNA and 93.4 0.53 1.1E-05 49.8 9.9 142 236-385 152-308 (660)
310 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.8 1.7E-05 44.6 11.0 51 261-320 19-69 (229)
311 PRK12724 flagellar biosynthesi 93.4 1.3 2.7E-05 47.0 12.8 127 262-424 223-356 (432)
312 TIGR03499 FlhF flagellar biosy 93.3 0.18 4E-06 50.9 6.5 20 261-280 193-212 (282)
313 TIGR00580 mfd transcription-re 93.3 0.25 5.4E-06 58.0 8.4 97 448-544 477-579 (926)
314 PRK05986 cob(I)alamin adenolsy 93.3 0.37 8E-06 45.2 7.9 144 260-421 20-166 (191)
315 PRK14949 DNA polymerase III su 93.2 0.72 1.6E-05 53.2 11.5 44 371-416 118-161 (944)
316 PF10593 Z1: Z1 domain; Inter 93.1 0.44 9.6E-06 46.7 8.6 90 494-589 110-204 (239)
317 PRK14960 DNA polymerase III su 93.1 0.93 2E-05 50.6 11.9 43 371-415 117-159 (702)
318 PRK04195 replication factor C 93.1 0.48 1E-05 52.0 9.8 17 262-278 39-55 (482)
319 PRK10867 signal recognition pa 93.1 1.4 2.9E-05 47.3 12.8 17 263-279 101-117 (433)
320 cd01122 GP4d_helicase GP4d_hel 93.1 0.88 1.9E-05 45.6 11.1 118 259-387 27-155 (271)
321 COG3973 Superfamily I DNA and 93.1 0.45 9.7E-06 51.6 9.0 89 231-321 188-283 (747)
322 PRK14873 primosome assembly pr 93.1 0.22 4.7E-06 56.3 7.2 92 454-546 171-265 (665)
323 COG0552 FtsY Signal recognitio 93.1 1.9 4.1E-05 43.8 13.0 130 264-424 141-280 (340)
324 KOG0991 Replication factor C, 93.0 0.37 7.9E-06 46.1 7.4 22 263-286 49-70 (333)
325 COG4626 Phage terminase-like p 93.0 0.72 1.6E-05 49.9 10.5 149 246-412 60-224 (546)
326 TIGR03877 thermo_KaiC_1 KaiC d 93.0 0.42 9E-06 47.0 8.3 52 261-321 20-71 (237)
327 PRK14956 DNA polymerase III su 93.0 0.43 9.2E-06 51.4 8.8 15 265-279 43-57 (484)
328 TIGR03015 pepcterm_ATPase puta 92.9 1.7 3.7E-05 43.3 13.0 31 248-278 24-59 (269)
329 KOG2543 Origin recognition com 92.9 2 4.4E-05 44.2 13.0 142 248-416 10-161 (438)
330 PRK11823 DNA repair protein Ra 92.9 0.54 1.2E-05 50.8 9.7 52 261-321 79-130 (446)
331 PHA00729 NTP-binding motif con 92.9 1 2.3E-05 43.5 10.5 77 349-425 59-140 (226)
332 PF05876 Terminase_GpA: Phage 92.9 0.14 3.1E-06 56.8 5.3 125 246-385 15-147 (557)
333 TIGR00959 ffh signal recogniti 92.9 1.6 3.4E-05 46.7 12.9 60 264-332 101-161 (428)
334 PRK09112 DNA polymerase III su 92.8 0.67 1.5E-05 48.3 9.9 40 370-410 139-178 (351)
335 COG2909 MalT ATP-dependent tra 92.8 0.4 8.6E-06 54.1 8.5 43 373-415 130-172 (894)
336 KOG0739 AAA+-type ATPase [Post 92.8 1.2 2.7E-05 44.1 10.8 147 222-425 127-290 (439)
337 PRK09111 DNA polymerase III su 92.7 0.99 2.2E-05 50.5 11.6 40 370-410 130-169 (598)
338 PRK07994 DNA polymerase III su 92.7 1.2 2.6E-05 50.0 12.2 41 371-413 118-158 (647)
339 PLN03025 replication factor C 92.7 1.2 2.6E-05 46.0 11.5 40 372-413 99-138 (319)
340 KOG1832 HIV-1 Vpr-binding prot 92.7 0.032 7E-07 61.9 -0.1 11 29-39 1393-1403(1516)
341 PF02572 CobA_CobO_BtuR: ATP:c 92.6 1.9 4.2E-05 39.8 11.5 137 265-420 6-146 (172)
342 PF13177 DNA_pol3_delta2: DNA 92.6 0.84 1.8E-05 41.9 9.3 42 371-413 101-142 (162)
343 PRK13341 recombination factor 92.6 0.88 1.9E-05 52.1 11.2 39 372-415 109-147 (725)
344 cd00984 DnaB_C DnaB helicase C 92.6 1.1 2.4E-05 44.0 10.8 38 261-305 12-49 (242)
345 PRK14962 DNA polymerase III su 92.5 0.88 1.9E-05 49.4 10.6 14 265-278 39-52 (472)
346 PF06745 KaiC: KaiC; InterPro 92.5 0.46 1E-05 46.2 7.8 134 261-413 18-160 (226)
347 COG0470 HolB ATPase involved i 92.4 0.61 1.3E-05 48.0 9.2 40 370-410 107-146 (325)
348 PRK13894 conjugal transfer ATP 92.4 0.47 1E-05 48.8 7.9 65 238-310 125-190 (319)
349 PF03796 DnaB_C: DnaB-like hel 92.1 1.2 2.5E-05 44.5 10.4 117 261-387 18-145 (259)
350 PF05496 RuvB_N: Holliday junc 92.1 0.47 1E-05 45.6 7.0 16 263-278 51-66 (233)
351 CHL00181 cbbX CbbX; Provisiona 92.1 2.1 4.5E-05 43.4 12.2 18 262-279 59-76 (287)
352 cd01121 Sms Sms (bacterial rad 92.1 1.1 2.3E-05 47.2 10.3 52 261-321 81-132 (372)
353 PRK14958 DNA polymerase III su 92.1 1.1 2.3E-05 49.3 10.7 39 371-410 118-156 (509)
354 PRK06645 DNA polymerase III su 92.0 1.1 2.4E-05 49.0 10.7 16 264-279 45-60 (507)
355 PRK06904 replicative DNA helic 92.0 2.8 6.2E-05 45.6 13.8 118 260-387 219-349 (472)
356 PRK07940 DNA polymerase III su 92.0 0.54 1.2E-05 49.8 8.0 46 370-417 115-160 (394)
357 PRK14952 DNA polymerase III su 91.9 1.1 2.4E-05 49.8 10.7 43 370-414 116-158 (584)
358 PF06733 DEAD_2: DEAD_2; Inte 91.9 0.13 2.9E-06 47.8 3.1 45 343-387 114-160 (174)
359 TIGR03878 thermo_KaiC_2 KaiC d 91.9 1.9 4E-05 43.1 11.4 37 261-305 35-71 (259)
360 TIGR02524 dot_icm_DotB Dot/Icm 91.8 0.49 1.1E-05 49.5 7.4 49 221-288 111-159 (358)
361 TIGR02928 orc1/cdc6 family rep 91.8 1.1 2.4E-05 47.1 10.3 24 263-287 41-64 (365)
362 PRK14961 DNA polymerase III su 91.8 0.41 9E-06 50.3 7.0 41 371-413 118-158 (363)
363 PRK09087 hypothetical protein; 91.8 0.56 1.2E-05 45.7 7.3 40 375-416 90-130 (226)
364 COG1198 PriA Primosomal protei 91.6 0.24 5.2E-06 56.0 5.1 91 452-543 226-318 (730)
365 PRK10689 transcription-repair 91.6 0.71 1.5E-05 55.6 9.3 98 447-544 625-728 (1147)
366 TIGR01243 CDC48 AAA family ATP 91.5 0.65 1.4E-05 53.8 8.8 24 262-287 487-510 (733)
367 PRK14963 DNA polymerase III su 91.4 0.96 2.1E-05 49.6 9.5 15 265-279 39-53 (504)
368 PRK10416 signal recognition pa 91.4 3.9 8.4E-05 42.1 13.4 134 262-425 114-256 (318)
369 PRK14951 DNA polymerase III su 91.4 0.96 2.1E-05 50.6 9.5 43 371-415 123-165 (618)
370 TIGR02880 cbbX_cfxQ probable R 91.4 0.92 2E-05 45.9 8.7 18 262-279 58-75 (284)
371 KOG0742 AAA+-type ATPase [Post 91.3 0.48 1E-05 48.9 6.4 103 263-416 385-496 (630)
372 PHA03372 DNA packaging termina 91.3 1.4 3E-05 48.3 10.2 129 261-413 201-337 (668)
373 KOG2028 ATPase related to the 91.2 1.3 2.8E-05 45.2 9.2 20 259-278 157-178 (554)
374 PRK14965 DNA polymerase III su 91.2 1.5 3.2E-05 49.2 10.8 43 370-414 117-159 (576)
375 PRK06964 DNA polymerase III su 91.2 1.5 3.2E-05 45.5 10.0 40 249-289 3-47 (342)
376 TIGR02782 TrbB_P P-type conjug 91.2 0.73 1.6E-05 46.9 7.8 58 248-311 117-175 (299)
377 PRK07471 DNA polymerase III su 91.1 1.8 3.9E-05 45.5 10.8 136 264-413 43-181 (365)
378 TIGR02525 plasmid_TraJ plasmid 91.1 0.4 8.7E-06 50.3 5.9 50 221-289 126-175 (372)
379 COG2109 BtuR ATP:corrinoid ade 91.1 1.7 3.7E-05 40.3 9.1 52 371-423 121-175 (198)
380 PF05729 NACHT: NACHT domain 91.0 1.4 3.1E-05 39.9 9.0 25 263-288 1-25 (166)
381 cd03115 SRP The signal recogni 91.0 4.2 9.1E-05 37.5 12.2 54 371-424 81-135 (173)
382 KOG0058 Peptide exporter, ABC 91.0 0.53 1.1E-05 52.4 6.8 142 259-411 491-661 (716)
383 PRK05563 DNA polymerase III su 90.9 1.8 3.8E-05 48.3 11.1 16 264-279 40-55 (559)
384 PRK08506 replicative DNA helic 90.9 1.8 3.9E-05 47.2 11.0 114 261-385 191-315 (472)
385 COG1197 Mfd Transcription-repa 90.7 0.78 1.7E-05 53.8 8.2 91 454-544 626-722 (1139)
386 PRK14959 DNA polymerase III su 90.7 0.95 2.1E-05 50.4 8.6 17 264-280 40-56 (624)
387 cd01128 rho_factor Transcripti 90.6 0.99 2.1E-05 44.6 7.9 20 259-278 13-32 (249)
388 PRK14957 DNA polymerase III su 90.6 2.4 5.3E-05 46.8 11.6 40 370-410 117-156 (546)
389 TIGR03600 phage_DnaB phage rep 90.6 2.6 5.6E-05 45.3 11.8 116 260-385 192-318 (421)
390 PRK13764 ATPase; Provisional 90.6 0.64 1.4E-05 51.7 7.1 26 261-287 256-281 (602)
391 PRK14955 DNA polymerase III su 90.6 2.3 5.1E-05 45.2 11.3 42 370-413 125-166 (397)
392 PRK08691 DNA polymerase III su 90.5 0.53 1.1E-05 52.9 6.5 40 370-410 117-156 (709)
393 PRK04841 transcriptional regul 90.5 2.1 4.6E-05 50.9 12.2 45 371-415 120-164 (903)
394 PRK14950 DNA polymerase III su 90.5 3 6.5E-05 46.9 12.5 42 370-413 118-159 (585)
395 PHA00012 I assembly protein 90.4 4.2 9.2E-05 41.3 12.0 56 371-426 80-140 (361)
396 PTZ00454 26S protease regulato 90.1 1.4 3E-05 46.8 9.1 54 222-278 139-195 (398)
397 COG0513 SrmB Superfamily II DN 90.1 1.1 2.5E-05 49.3 8.6 68 473-544 102-180 (513)
398 PRK08840 replicative DNA helic 90.0 4.3 9.2E-05 44.1 12.8 116 260-385 215-342 (464)
399 PF03237 Terminase_6: Terminas 90.0 2.3 4.9E-05 44.5 10.7 103 266-386 1-111 (384)
400 PRK13851 type IV secretion sys 89.9 0.53 1.2E-05 48.8 5.6 46 257-311 157-202 (344)
401 TIGR01243 CDC48 AAA family ATP 89.9 1.6 3.5E-05 50.5 10.1 25 261-287 211-235 (733)
402 KOG1133 Helicase of the DEAD s 89.9 0.46 1E-05 52.1 5.1 42 246-287 14-59 (821)
403 KOG0741 AAA+-type ATPase [Post 89.8 6.9 0.00015 42.2 13.4 137 230-416 494-652 (744)
404 cd03239 ABC_SMC_head The struc 89.8 0.31 6.7E-06 45.6 3.4 42 371-412 115-157 (178)
405 COG1110 Reverse gyrase [DNA re 89.8 0.75 1.6E-05 52.9 6.8 73 456-529 112-190 (1187)
406 TIGR01241 FtsH_fam ATP-depende 89.8 2.4 5.2E-05 46.7 10.9 60 222-286 49-110 (495)
407 PRK11034 clpA ATP-dependent Cl 89.8 3 6.4E-05 48.1 11.9 45 373-417 279-327 (758)
408 COG1200 RecG RecG-like helicas 89.8 1.2 2.5E-05 49.4 8.1 87 458-544 299-390 (677)
409 PRK14969 DNA polymerase III su 89.7 1.8 3.8E-05 47.9 9.8 40 370-410 117-156 (527)
410 PF03969 AFG1_ATPase: AFG1-lik 89.6 4.6 0.0001 42.3 12.3 109 262-416 62-171 (362)
411 PF02534 T4SS-DNA_transf: Type 89.6 0.35 7.6E-06 52.8 4.2 49 263-321 45-93 (469)
412 PRK04328 hypothetical protein; 89.6 2.9 6.4E-05 41.3 10.4 52 261-321 22-73 (249)
413 PRK06067 flagellar accessory p 89.6 5.1 0.00011 39.1 12.1 52 261-321 24-75 (234)
414 TIGR01420 pilT_fam pilus retra 89.4 1.1 2.4E-05 46.6 7.6 43 261-310 121-163 (343)
415 KOG0738 AAA+-type ATPase [Post 89.4 2 4.3E-05 44.4 8.8 16 263-278 246-261 (491)
416 TIGR00635 ruvB Holliday juncti 89.3 0.74 1.6E-05 47.1 6.1 16 263-278 31-46 (305)
417 PRK08006 replicative DNA helic 89.3 5.9 0.00013 43.1 13.3 115 261-385 223-349 (471)
418 PF01695 IstB_IS21: IstB-like 89.3 0.83 1.8E-05 42.7 5.9 50 256-314 41-90 (178)
419 TIGR00678 holB DNA polymerase 89.2 4.9 0.00011 37.7 11.3 41 370-412 94-134 (188)
420 cd01126 TraG_VirD4 The TraG/Tr 89.2 0.27 5.9E-06 52.2 2.8 56 264-333 1-56 (384)
421 PRK05896 DNA polymerase III su 89.1 0.65 1.4E-05 51.5 5.7 16 264-279 40-55 (605)
422 COG1132 MdlB ABC-type multidru 89.0 0.78 1.7E-05 51.5 6.5 44 370-413 481-524 (567)
423 TIGR02012 tigrfam_recA protein 89.0 1.8 3.9E-05 44.4 8.4 43 261-311 54-96 (321)
424 PRK14954 DNA polymerase III su 89.0 2.3 5.1E-05 47.7 10.1 16 264-279 40-55 (620)
425 cd01130 VirB11-like_ATPase Typ 88.9 1.2 2.7E-05 41.8 6.9 32 247-278 9-41 (186)
426 COG0210 UvrD Superfamily I DNA 88.9 0.97 2.1E-05 51.7 7.3 71 247-323 2-72 (655)
427 PRK07414 cob(I)yrinic acid a,c 88.9 2 4.4E-05 39.8 7.9 51 370-420 113-165 (178)
428 TIGR00665 DnaB replicative DNA 88.8 3.8 8.2E-05 44.3 11.4 113 261-385 194-318 (434)
429 PRK06871 DNA polymerase III su 88.7 3.4 7.3E-05 42.6 10.3 40 370-410 105-144 (325)
430 PRK03992 proteasome-activating 88.7 1.8 3.9E-05 46.0 8.6 17 262-278 165-181 (389)
431 TIGR00763 lon ATP-dependent pr 88.7 6.1 0.00013 46.1 13.6 18 261-278 346-363 (775)
432 PRK08699 DNA polymerase III su 88.6 2.4 5.1E-05 43.8 9.1 31 249-279 3-38 (325)
433 PF01637 Arch_ATPase: Archaeal 88.6 0.66 1.4E-05 44.9 5.0 55 355-413 105-165 (234)
434 PRK13900 type IV secretion sys 88.5 1.5 3.3E-05 45.3 7.7 45 258-311 156-200 (332)
435 PRK07004 replicative DNA helic 88.5 2.8 6E-05 45.6 10.0 115 261-385 212-337 (460)
436 TIGR00614 recQ_fam ATP-depende 88.4 1.8 3.9E-05 47.3 8.7 75 470-544 51-133 (470)
437 PF05707 Zot: Zonular occluden 88.3 1.5 3.2E-05 41.6 7.0 53 372-424 79-136 (193)
438 COG1485 Predicted ATPase [Gene 88.3 8.6 0.00019 39.5 12.5 109 263-417 66-175 (367)
439 PRK05973 replicative DNA helic 88.3 0.88 1.9E-05 44.5 5.5 65 247-321 50-114 (237)
440 PRK13897 type IV secretion sys 88.3 0.5 1.1E-05 52.8 4.2 57 263-333 159-215 (606)
441 PF01443 Viral_helicase1: Vira 88.2 0.46 9.9E-06 46.4 3.5 14 265-278 1-14 (234)
442 PRK14948 DNA polymerase III su 88.1 3.9 8.4E-05 46.2 11.1 15 264-278 40-54 (620)
443 TIGR02639 ClpA ATP-dependent C 88.0 6.9 0.00015 45.3 13.5 16 263-278 204-219 (731)
444 COG1219 ClpX ATP-dependent pro 88.0 0.49 1.1E-05 47.4 3.4 28 260-289 95-122 (408)
445 cd01129 PulE-GspE PulE/GspE Th 88.0 1.4 3E-05 44.1 6.8 37 250-287 66-104 (264)
446 PRK00440 rfc replication facto 87.8 3.6 7.8E-05 42.1 10.1 38 372-410 102-139 (319)
447 KOG1132 Helicase of the DEAD s 87.8 11 0.00024 43.0 14.1 38 346-384 220-259 (945)
448 PF12846 AAA_10: AAA-like doma 87.8 1.6 3.6E-05 44.1 7.5 43 262-312 1-43 (304)
449 PRK09165 replicative DNA helic 87.7 3.4 7.4E-05 45.4 10.2 120 261-385 216-354 (497)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.6 4.1 9E-05 36.4 9.1 40 370-412 86-125 (144)
451 PRK06090 DNA polymerase III su 87.5 2.1 4.6E-05 43.9 7.9 42 370-412 106-147 (319)
452 PRK07993 DNA polymerase III su 87.5 3.5 7.6E-05 42.7 9.7 43 370-414 106-148 (334)
453 PRK06647 DNA polymerase III su 87.2 2.2 4.9E-05 47.4 8.5 43 370-414 117-159 (563)
454 COG2804 PulE Type II secretory 87.2 0.98 2.1E-05 48.4 5.4 40 249-289 243-284 (500)
455 KOG0701 dsRNA-specific nucleas 87.0 0.49 1.1E-05 57.5 3.4 93 473-565 295-399 (1606)
456 PRK08451 DNA polymerase III su 86.8 1 2.2E-05 49.5 5.4 40 370-410 115-154 (535)
457 KOG0730 AAA+-type ATPase [Post 86.7 4.8 0.0001 44.5 10.3 56 220-278 426-484 (693)
458 KOG0347 RNA helicase [RNA proc 86.7 1.3 2.9E-05 47.5 5.9 68 473-544 266-346 (731)
459 TIGR00767 rho transcription te 86.6 2.5 5.4E-05 44.5 7.9 19 260-278 166-184 (415)
460 KOG1513 Nuclear helicase MOP-3 86.5 0.55 1.2E-05 52.2 3.2 154 246-413 263-454 (1300)
461 CHL00176 ftsH cell division pr 86.4 3.6 7.8E-05 46.5 9.6 23 262-286 216-238 (638)
462 KOG1969 DNA replication checkp 86.4 3.4 7.3E-05 46.2 9.0 16 263-278 327-342 (877)
463 TIGR03880 KaiC_arch_3 KaiC dom 86.2 6.5 0.00014 38.1 10.4 52 261-321 15-66 (224)
464 PRK06305 DNA polymerase III su 86.2 5.7 0.00012 43.0 10.8 15 264-278 41-55 (451)
465 PRK07133 DNA polymerase III su 86.1 1.8 4E-05 49.1 7.1 43 370-414 116-158 (725)
466 PRK00080 ruvB Holliday junctio 86.1 1.8 4E-05 44.8 6.8 16 263-278 52-67 (328)
467 TIGR03346 chaperone_ClpB ATP-d 85.9 7.6 0.00017 45.8 12.5 16 263-278 195-210 (852)
468 COG2255 RuvB Holliday junction 85.9 2.1 4.6E-05 42.4 6.5 27 355-385 90-116 (332)
469 PRK10436 hypothetical protein; 85.9 1.9 4E-05 46.7 6.8 26 261-287 217-242 (462)
470 PRK07413 hypothetical protein; 85.8 4 8.6E-05 42.6 8.9 52 370-422 303-358 (382)
471 TIGR02858 spore_III_AA stage I 85.8 5.3 0.00011 40.0 9.5 30 256-287 102-134 (270)
472 PRK05636 replicative DNA helic 85.6 5.9 0.00013 43.5 10.6 110 262-385 265-388 (505)
473 cd00268 DEADc DEAD-box helicas 85.5 20 0.00044 33.8 13.3 71 470-544 69-149 (203)
474 PRK06620 hypothetical protein; 85.5 4.9 0.00011 38.8 8.9 107 300-416 16-126 (214)
475 TIGR02868 CydC thiol reductant 85.4 1.1 2.4E-05 49.8 5.1 42 370-411 486-527 (529)
476 TIGR02533 type_II_gspE general 85.4 1.5 3.3E-05 47.8 5.9 37 250-287 228-266 (486)
477 TIGR00416 sms DNA repair prote 85.3 3.6 7.8E-05 44.6 8.7 52 261-321 93-144 (454)
478 TIGR02655 circ_KaiC circadian 85.2 8.8 0.00019 42.1 11.8 52 261-321 262-313 (484)
479 CHL00095 clpC Clp protease ATP 85.2 5.6 0.00012 46.7 10.9 16 263-278 201-216 (821)
480 PRK07399 DNA polymerase III su 84.9 7 0.00015 40.1 10.2 126 264-411 28-161 (314)
481 PRK08760 replicative DNA helic 84.9 5 0.00011 43.8 9.7 113 261-385 228-352 (476)
482 PRK10865 protein disaggregatio 84.9 7.2 0.00016 45.9 11.6 16 263-278 200-215 (857)
483 TIGR03345 VI_ClpV1 type VI sec 84.8 9.6 0.00021 44.8 12.4 22 263-286 209-230 (852)
484 cd01131 PilT Pilus retraction 84.7 1.4 3.1E-05 41.8 4.8 23 264-287 3-25 (198)
485 cd00267 ABC_ATPase ABC (ATP-bi 84.6 1.9 4.1E-05 39.2 5.4 43 371-413 97-139 (157)
486 PRK05595 replicative DNA helic 84.6 3.2 7E-05 44.9 8.0 115 261-386 200-325 (444)
487 PF04665 Pox_A32: Poxvirus A32 84.5 1.4 3.1E-05 43.0 4.7 36 264-307 15-50 (241)
488 PF13555 AAA_29: P-loop contai 84.5 1.4 3E-05 33.1 3.6 25 262-288 23-47 (62)
489 KOG2004 Mitochondrial ATP-depe 84.4 13 0.00028 41.8 12.1 47 352-401 488-534 (906)
490 cd03222 ABC_RNaseL_inhibitor T 84.4 2.5 5.5E-05 39.4 6.2 44 370-413 87-131 (177)
491 TIGR00602 rad24 checkpoint pro 84.4 6.1 0.00013 44.5 10.1 16 263-278 111-126 (637)
492 PRK14701 reverse gyrase; Provi 84.4 3.8 8.3E-05 51.2 9.3 59 470-528 122-186 (1638)
493 TIGR02640 gas_vesic_GvpN gas v 84.3 2.3 5E-05 42.4 6.3 26 253-278 12-37 (262)
494 PF14516 AAA_35: AAA-like doma 84.3 12 0.00027 38.7 11.9 38 250-288 18-56 (331)
495 PRK06321 replicative DNA helic 84.2 12 0.00025 40.9 12.0 112 262-385 226-349 (472)
496 PRK13850 type IV secretion sys 84.0 1.1 2.5E-05 50.6 4.3 56 263-332 140-195 (670)
497 PHA03311 helicase-primase subu 83.9 2.1 4.5E-05 47.9 6.0 44 263-319 72-115 (828)
498 COG4178 ABC-type uncharacteriz 83.9 8.3 0.00018 42.8 10.7 54 369-424 530-583 (604)
499 PLN00020 ribulose bisphosphate 83.9 1.3 2.9E-05 45.8 4.3 16 263-278 149-164 (413)
500 PRK09354 recA recombinase A; P 83.7 4.8 0.0001 41.7 8.4 116 261-410 59-193 (349)
No 1
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-103 Score=781.86 Aligned_cols=595 Identities=61% Similarity=0.938 Sum_probs=532.7
Q ss_pred CCCCCCcccccccccCCCccccccCCCcccccCCCCCCCCCCCC---CCCCCCCcccccchhhccCCCCCCCCCccCChH
Q 007090 1 MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYE---DTDLDNIDYEDNDAAKAANDTGNGAEKEEIDPL 77 (618)
Q Consensus 1 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 77 (618)
|..|.|||+||+.++...|++.++.+|++.|.+.+...+-.+.. +.-.++++.|+++..++.+......+.||+|++
T Consensus 1 l~~r~~g~~g~~rn~~ts~~~e~s~~~~~~y~~~s~yg~~~~~~~~rk~i~ddey~eddd~p~~~s~~~a~~~~de~d~l 80 (731)
T KOG0339|consen 1 LSNRKFGMEGFGRNRQTSYSFERSQAPQRLYVPPSSYGGDNSEDADRKNIDDDEYEEDDDIPEGGSAAAAGGEVDEIDPL 80 (731)
T ss_pred CCccCCCCCCCCcCcccccchhhhcCccceecChhhcCCCchhhhhhhcccccccccccccccccchhhccCCCCCCCCc
Confidence 46788999999999999999999999999998655443321111 111222222233333334455667788899999
Q ss_pred HHHHHhhHHHhhcCCCCCCccccc-cccCCCC-----------CChhhHHHHhhhhhchhhhhhhhhcCCCChHHHHHHH
Q 007090 78 DAFMEGIHEEMRAAPPPKPKEKLE-RYKDDDE-----------EDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAA 145 (618)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~ 145 (618)
+|||+.++.++++.++...+++.+ +.+++++ ++..+.++.++.+ .......
T Consensus 81 dafMA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~kym~e-----------------~k~~~~~ 143 (731)
T KOG0339|consen 81 DAFMAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKYMSE-----------------NKRAGAA 143 (731)
T ss_pred chhhhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHHhhh-----------------cccchhh
Confidence 999999999998877554443333 2222222 2222333332222 1111123
Q ss_pred hhhhcCCCCCCCCCChhhhhhccCCCCCCCCCCCcccCCCcccCccCCccccCCCHHHHHHHHHhcCeeeccCCCCCccC
Q 007090 146 KAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVK 225 (618)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~p~~ 225 (618)
.+.++...+||+++++....||.++|+++++|+.+.|.||+++||.+|+.|+.|+..+...++..+++++.|..+|+|++
T Consensus 144 ~e~~~~~leydsd~nPi~~~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvt 223 (731)
T KOG0339|consen 144 KECDDMCLEYDSDGNPIAPDKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVT 223 (731)
T ss_pred hhcccceeecCCCCCccCcccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcc
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~ 305 (618)
+|+++++++.|+.++.+..|++|||+|.+++|..++|++++.+|.||||||.+|++|++.|+++++.+..+++|..||||
T Consensus 224 sfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 224 SFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 306 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
|||+||.|++.++++|++.++++++++|||.+.++|+..|+.++.||||||++|++++..+..++.++++||||||++|+
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmf 383 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMF 383 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcC
Q 007090 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465 (618)
Q Consensus 386 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~ 465 (618)
+++|+++++.|..+++|+||+|+||||++..++.+++.++.+|+++..+.++..+..|.|.+.++.+...|+.||+..|.
T Consensus 384 dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~ 463 (731)
T KOG0339|consen 384 DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLV 463 (731)
T ss_pred ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEc
Q 007090 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF 545 (618)
Q Consensus 466 ~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~ 545 (618)
.....|++|||+..+..++.++..|+..++++..+||++.|.+|.+++..|+.+...|||+|++++||+||+.+++||||
T Consensus 464 ~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvny 543 (731)
T KOG0339|consen 464 EFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNY 543 (731)
T ss_pred hhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHHHhhccccch
Q 007090 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVILLDI 613 (618)
Q Consensus 546 ~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~~~~~~~~~~ 613 (618)
|.-.+++.|.|||||+||+|. .|++|++++..|..++..||+.|+.++|.||++|++|||++.|++-
T Consensus 544 D~ardIdththrigrtgRag~-kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~ 610 (731)
T KOG0339|consen 544 DFARDIDTHTHRIGRTGRAGE-KGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRS 610 (731)
T ss_pred cccchhHHHHHHhhhcccccc-cceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhh
Confidence 999999999999999999995 5999999999999999999999999999999999999999999863
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-79 Score=634.39 Aligned_cols=427 Identities=50% Similarity=0.815 Sum_probs=396.6
Q ss_pred cccCCCcccCccCCccccCCCHHHHHHHHHhcCeeeccCC-CCCccCCccc-----------------------------
Q 007090 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFD-VPRPVKTFED----------------------------- 229 (618)
Q Consensus 180 ~~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~~~~----------------------------- 229 (618)
..+.+|.+.||.+++........+...++....+.+++.. +|.|+.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4577899999999988888888888888888888888766 7877666554
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhc-CCccccCCCCeEEEEcccH
Q 007090 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD-QPELQKEEGPIGVICAPTR 308 (618)
Q Consensus 230 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~vLIl~Ptr 308 (618)
++++..+...++..||..|+|||.++||.++.|+|++.++.||||||++|++|++.|+.. ++....+++|.+|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 456667777788999999999999999999999999999999999999999999999998 7788888999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC
Q 007090 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (618)
Q Consensus 309 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~ 388 (618)
+||.|+...+..++....+++.|++||.+...|...+.+|.+|+|+||++|+++++.....|+++.|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhc-CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcc--ccccceeEEEEEcCCCcccHHHHHHhcC
Q 007090 389 FEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--MANEDITQVVHVIPSDAEKLPWLLEKLP 465 (618)
Q Consensus 389 ~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~q~~~~~~~~~~k~~~l~~~l~ 465 (618)
|.++++.|++.+ ++.+|++++|||||..+..++..|+.+|+.+.++... .++.+|.|....++ ...|...|..+|.
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~ 334 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLE 334 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHH
Confidence 999999999999 7888999999999999999999999999999998654 67889999999887 6677777777776
Q ss_pred CCC--CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEE
Q 007090 466 GMI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (618)
Q Consensus 466 ~~~--~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI 543 (618)
... ..+++||||+++..|++|+..|+..++++.+|||+.+|.+|..+++.|++|++.|||||++|+||||||+|++||
T Consensus 335 ~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 335 DISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI 414 (519)
T ss_pred HHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE
Confidence 654 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHHHhhc
Q 007090 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKV 608 (618)
Q Consensus 544 ~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~~~~~ 608 (618)
|||+|.++++|+||+||+||+| +.|.+++||+..+...+..+++.|.+++|.+|+.|..++...
T Consensus 415 nydfP~~vEdYVHRiGRTGRa~-~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 415 NYDFPNNVEDYVHRIGRTGRAG-KKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred eCCCCCCHHHHHhhcCccccCC-CCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 9999999999999999999999 679999999999999999999999999999999999997553
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-77 Score=583.74 Aligned_cols=425 Identities=43% Similarity=0.716 Sum_probs=397.2
Q ss_pred ccCCCcccCccCCccccCCCHHHHHHHHHhc-Ceeecc------CCCCCccCCccc-cCCCHHHHHHHHHCCCCCCcHHH
Q 007090 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSG------FDVPRPVKTFED-CGFSTQLMHAISKQGYEKPTSIQ 252 (618)
Q Consensus 181 ~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~-~~~~~~------~~~p~p~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q 252 (618)
..+|..++||.++.+.++|+..++..++++. ++.+.. ..+|+|..+|++ +...+.++..+.+.||.+|+|||
T Consensus 168 ~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIq 247 (629)
T KOG0336|consen 168 KLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQ 247 (629)
T ss_pred cCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcch
Confidence 3458899999999999999999999999877 666643 357999999998 57889999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCc-cccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEE
Q 007090 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (618)
Q Consensus 253 ~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~-~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~ 331 (618)
.|+||++++|.|+++.+.||+|||++|++|.+.|+..++. +...++|.+|+++|||+||.|+.-++.++.- .|++.+|
T Consensus 248 SQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc 326 (629)
T KOG0336|consen 248 SQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVC 326 (629)
T ss_pred hcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEE
Confidence 9999999999999999999999999999999999988874 3467799999999999999999998888754 4899999
Q ss_pred EECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 332 VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
++||.+..+++..+++|.+|+++||++|.++...+.++|.++.|+|+||||+|++|+|++++++|+-.++|+||+++.||
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA 406 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHcCCCeEEEEcCccc-cccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHH
Q 007090 412 TMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQL 490 (618)
Q Consensus 412 T~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L 490 (618)
|||+.+..++..|+.+|+.+.++.... +...+.|.+ .+..+..|+..+...+....+..++||||..+..++.|..-|
T Consensus 407 TWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~ 485 (629)
T KOG0336|consen 407 TWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDF 485 (629)
T ss_pred cCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchh
Confidence 999999999999999999999998775 456778887 666777888887777877778899999999999999999999
Q ss_pred HhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeE
Q 007090 491 AQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT 570 (618)
Q Consensus 491 ~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~ 570 (618)
.-.|+.+..|||+-+|.+|+.+++.|++|.++|||||++++||||++++.||+|||+|.|++.|+||+||+||+| +.|+
T Consensus 486 ~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG-r~G~ 564 (629)
T KOG0336|consen 486 CLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG-RTGT 564 (629)
T ss_pred hhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 6899
Q ss_pred EEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHHHhhc
Q 007090 571 AYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKV 608 (618)
Q Consensus 571 ~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~~~~~ 608 (618)
+++|++.+|...+..|+++|+.++|.||++|..+|.+-
T Consensus 565 sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred eEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999763
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.7e-77 Score=596.56 Aligned_cols=492 Identities=38% Similarity=0.615 Sum_probs=424.5
Q ss_pred cccCCCCCChhhHHH-HhhhhhchhhhhhhhhcCCCChHHHHHHHhhhhcCCCCCCCCCChh--hhhhccCCCCCCCCCC
Q 007090 102 RYKDDDEEDPMESFL-MAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPV--VVEKKKIEPIPALDHS 178 (618)
Q Consensus 102 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~~~~~~~~~ 178 (618)
.++++..+|-...+. -.........|+.+..+|.|..++..+.+...+-...-.-+++... ..-.+...+ ..
T Consensus 128 ~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~~~~~~e~r~t~~~ke~~~~~~qk~~k~-----~~ 202 (673)
T KOG0333|consen 128 VFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSKYGEMMEKRRTEDEKEQEEELLQKVCKK-----EA 202 (673)
T ss_pred EEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhhhhhHhhhhcchhhhhhHHHHHHHhhhh-----hh
Confidence 577877666544322 1233455667999999999998887766542221110000011000 000000000 01
Q ss_pred CcccCCCcccCccCCccccCCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH
Q 007090 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258 (618)
Q Consensus 179 ~~~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~ 258 (618)
...|+ ...|.+. .+..|++.+|..|+..++|.++|..+|.|+.+|++.+||..+++.+.+.||..|+|+|++++|.
T Consensus 203 k~~~D---drhW~~k-~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl 278 (673)
T KOG0333|consen 203 KSGWD---DRHWSEK-VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPL 278 (673)
T ss_pred hcccc---ccchhhh-hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccc
Confidence 11222 2334333 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc----cCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEEC
Q 007090 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ----KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~----~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 334 (618)
+++++|+|+.++||||||++|++|++.++...|+.. ...||+++|++|||+||+||.++..+|++..+++++.++|
T Consensus 279 ~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvig 358 (673)
T KOG0333|consen 279 GLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIG 358 (673)
T ss_pred hhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEec
Confidence 999999999999999999999999999999888543 3568999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC------------
Q 007090 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP------------ 402 (618)
Q Consensus 335 g~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~------------ 402 (618)
|.+..++...+..||+|+|+||++|++.+.+.++.++.+.+||+|||++|++++|++++..++.+++.
T Consensus 359 g~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~ 438 (673)
T KOG0333|consen 359 GLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEG 438 (673)
T ss_pred ccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhh
Confidence 99999998899999999999999999999999999999999999999999999999999999998863
Q ss_pred -------------CccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC
Q 007090 403 -------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (618)
Q Consensus 403 -------------~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~ 469 (618)
-+|+++||||+||.++.+++.|+.+|+.++++..+...+.+.|.+..+.. +.|+..|.++|... .
T Consensus 439 ~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~-~ 516 (673)
T KOG0333|consen 439 EERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESN-F 516 (673)
T ss_pred HHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhC-C
Confidence 17999999999999999999999999999999999999999999998865 46799999999876 4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~ 549 (618)
..++|||+|++..|+.|++.|.+.|+++..|||+.+|++|..+++.|++|...|||||++++||||||+|.+|||||++.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak 596 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK 596 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHH-HcCCCCCHHHHHHH
Q 007090 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI-AAGQNVSMELMDLA 605 (618)
Q Consensus 550 ~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~-~~~~~v~~~l~~~~ 605 (618)
++.+|+|||||+||+| +.|++++|+++.|...+++|+..|. ......|++|....
T Consensus 597 sieDYtHRIGRTgRAG-k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~ 652 (673)
T KOG0333|consen 597 SIEDYTHRIGRTGRAG-KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHP 652 (673)
T ss_pred hHHHHHHHhccccccc-cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccCh
Confidence 9999999999999999 7899999999999999999999998 46789999987553
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.5e-73 Score=619.68 Aligned_cols=438 Identities=47% Similarity=0.749 Sum_probs=406.2
Q ss_pred CCCCCCCCCCcccCCCcccCccCCccccCCCHHHHHHHHHhcCeee-ccCCCCCccCCccccCCCHHHHHHHHHCCCCCC
Q 007090 170 EPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKP 248 (618)
Q Consensus 170 ~~~~~~~~~~~~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~ 248 (618)
..++.++|+...+.||+++||.+++.+..++.+++..+++...+.+ .|..+|+|+.+|.+++|++.+++.|.+.||.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 3677889988899999999999999999999999999999998886 788899999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCce
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~ 328 (618)
+|+|.++||.+++|+|+|++++||||||++|++|++.++..++......+|.+|||+|||+||.|+.+.+.+++...+++
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999988766666678999999999999999999999999888999
Q ss_pred EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEE
Q 007090 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (618)
Q Consensus 329 ~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~ 408 (618)
+.+++||.....+...+..+++|+|+||++|.+++......++++.+|||||||+|++++|..++..++..+++.+|+++
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~ 313 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 313 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEE
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred EeccccHHHHHHHHHHcC-CCeEEEEcCcc-ccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHH
Q 007090 409 FSATMPRKVEKLAREILS-DPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDE 485 (618)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~-~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~ 485 (618)
||||+|..++.+++.++. +++.+.++... .....+.|.+..+. ...|...|..++.... ..+++||||+++..++.
T Consensus 314 ~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 314 WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 999999999999999886 58888877654 34456777777664 3467777777776554 46799999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC
Q 007090 486 IESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (618)
Q Consensus 486 l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g 565 (618)
++..|...++.+..+||++++.+|..+++.|++|+.+|||||++++||||||+|++||+||+|.++..|+||+||+||.|
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHHHhhcc
Q 007090 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVI 609 (618)
Q Consensus 566 ~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~~~~~~ 609 (618)
+.|.|++|+++.+...+..|++.|..++|.||++|.+++....
T Consensus 473 -~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 473 -AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred -CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999987654
No 6
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-74 Score=625.18 Aligned_cols=441 Identities=49% Similarity=0.798 Sum_probs=424.6
Q ss_pred hccCCCCCCCCCCCcccCCCcccCccCCccccCCCHHHHHHHHHhcC-eeeccCCCCCccCCccccCCCHHHHHHHHHCC
Q 007090 166 KKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQG 244 (618)
Q Consensus 166 ~k~~~~~~~~~~~~~~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~ 244 (618)
.+....+..++|+.+.|+||+++||.+.++|+.|+..++..++..+. +.+.|..+|+|+.+|.++|+...++..+++.|
T Consensus 305 ~~~~~~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~ 384 (997)
T KOG0334|consen 305 LKAKKNLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLG 384 (997)
T ss_pred cccccceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhc
Confidence 34444788999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
|.+|+|||.+|||+|++|+|+|++|.||||||++|++|++.|+..+|....+.||.+||++|||+||.||.+++.+|+..
T Consensus 385 y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc---ccccCceeEEEecchhhhhcCCChHHHHHHHHhcC
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~ 401 (618)
.+++++++|||....+++..+++|+.|+||||+++++++..+ ..+|.++.++|+||||+|++++|.+++..|+..++
T Consensus 465 l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR 544 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc
Confidence 999999999999999999999999999999999999998654 34567778999999999999999999999999999
Q ss_pred CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChh
Q 007090 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~ 481 (618)
+.+|+++||||+|..+..+++..++.|+.+.++..+..+..+.|.+.++.....|+..|.++|......+++||||..+.
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 99999999999999999999999999999999999999999999999999889999999999999888999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhc
Q 007090 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561 (618)
Q Consensus 482 ~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~ 561 (618)
.|+.+.+.|.+.|+.+..|||+.++.+|..+++.|++|.+.+||+|++++||||++.+..||||++|....+|+||+||+
T Consensus 625 ~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRT 704 (997)
T KOG0334|consen 625 KADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRT 704 (997)
T ss_pred HHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHHHhh
Q 007090 562 GRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607 (618)
Q Consensus 562 gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~~~~ 607 (618)
||+| +.|.|++|+++.+..++.+|+++|+.+++.+|..|..|+.+
T Consensus 705 grag-rkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~ 749 (997)
T KOG0334|consen 705 GRAG-RKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSER 749 (997)
T ss_pred ccCC-ccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHH
Confidence 9999 56999999999999999999999999999999999988754
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.9e-74 Score=556.16 Aligned_cols=426 Identities=43% Similarity=0.674 Sum_probs=402.3
Q ss_pred CcccCCCcccCccCCccccCCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH
Q 007090 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258 (618)
Q Consensus 179 ~~~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~ 258 (618)
.+.|+.--+.-|.++--+..|++++.+..|+.+.|.+.|..+|+|+.+|.++.+|..+++.+++.|+..|||+|.|.+|.
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv 203 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV 203 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce
Confidence 46777777788988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCC---ccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc------CceE
Q 007090 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH------GIRV 329 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~------~~~~ 329 (618)
+++|||+|.+|-||||||++|++|++...+.+. +...+.||..||+||+|+||.|+++.+..++..+ .+++
T Consensus 204 vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 204 VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 999999999999999999999999998887654 4456789999999999999999999999987754 4688
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEE
Q 007090 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLF 409 (618)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~ 409 (618)
..+.||.+..++...++.|.+|+|+||++|.+++.++..+|.-+.|+++||||+|++++|...++.++..+..+||+++|
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLF 363 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLF 363 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHH
Q 007090 410 SATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (618)
Q Consensus 410 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~ 489 (618)
|||+|..++.+++.-+-.|+.++++..+.++-++.|.+.++.. ..|..+|++.|++. ..++||||..+.+++.+.+|
T Consensus 364 SATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq-EaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ-EAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred eccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh-hhhhhhHHHHhccC--CCceEEEeccccChHHHHHH
Confidence 9999999999999999999999999999999999999888864 57999999999876 56899999999999999999
Q ss_pred HHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCe
Q 007090 490 LAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG 569 (618)
Q Consensus 490 L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g 569 (618)
|--+|..++.|||+.+|++|..+++.|+.|+.+|||||++++.|+|+|++.+|||||+|..++.|+|||||+||.| ++|
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg-~~G 519 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG-KTG 519 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 689
Q ss_pred EEEEEecCc-cHHHHHHHHHHHHHcCCCCCHHHHHHHhhc
Q 007090 570 TAYTLVTQK-EARFAGELVNSLIAAGQNVSMELMDLAMKV 608 (618)
Q Consensus 570 ~~~~l~~~~-d~~~~~~i~~~l~~~~~~v~~~l~~~~~~~ 608 (618)
.+.+|+.++ +...+-+|...|.+++|.+|+-|..|+...
T Consensus 520 iATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~ 559 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPM 559 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCc
Confidence 999999986 678899999999999999999999998543
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.1e-67 Score=576.37 Aligned_cols=431 Identities=31% Similarity=0.529 Sum_probs=390.7
Q ss_pred CCCCCCCCccc-CCCcccCccCCcccc-CCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCc
Q 007090 172 IPALDHSLIDY-EPFNKDFYQDSASIS-GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249 (618)
Q Consensus 172 ~~~~~~~~~~~-~~f~~~f~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~ 249 (618)
...++|....+ ++|+++||..++... +++..++..+++.+++.+.|...|+|+.+|.+++|++.+++.|.+.||..|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~pt 145 (518)
T PLN00206 66 RVAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPT 145 (518)
T ss_pred cCCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCC
Confidence 44566666655 778999999888764 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCc--cccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCc
Q 007090 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (618)
Q Consensus 250 ~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~ 327 (618)
|+|.++||.+++|+|+++++|||||||++|++|++.++..... .....+|++|||+|||+||.|+.+.+..+....++
T Consensus 146 piQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~ 225 (518)
T PLN00206 146 PIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPF 225 (518)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999875432 12336899999999999999999999999888889
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEE
Q 007090 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTL 407 (618)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i 407 (618)
++..++||.....+...+..+++|+|+||++|.+++.+....++++.+|||||||+|++++|..++..++..+ +.+|++
T Consensus 226 ~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l 304 (518)
T PLN00206 226 KTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVL 304 (518)
T ss_pred eEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEE
Confidence 9999999999998988888999999999999999998888889999999999999999999999999999888 578999
Q ss_pred EEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHH
Q 007090 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEI 486 (618)
Q Consensus 408 ~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l 486 (618)
+||||+++.++.++..++.+++.+.++........+.+.+..+.. ..+...+...+.... ..+++||||+++..++.+
T Consensus 305 ~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 305 LFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred EEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 999999999999999999999999988777667777887776653 456666777665432 245899999999999999
Q ss_pred HHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC
Q 007090 487 ESQLAQ-KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (618)
Q Consensus 487 ~~~L~~-~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g 565 (618)
++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++||+|+|+|++||+||+|.++..|+||+||+||.|
T Consensus 384 ~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 384 ANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred HHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC
Confidence 999975 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007090 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605 (618)
Q Consensus 566 ~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~~ 605 (618)
..|.+++|+++.+...+.++++.|+.+++.+|++|.+..
T Consensus 464 -~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 464 -EKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred -CCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 579999999999999999999999999999999998754
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-68 Score=519.77 Aligned_cols=366 Identities=39% Similarity=0.643 Sum_probs=346.9
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
...+|.++++.+.+.+++...++.+||++|++++|.++.|+|+|+.|+||||||.+|++|++++++..|. .+.+|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999998763 48999
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH-ccccccCceeEEEecch
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEA 381 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~-~~~~~l~~~~~iIvDEa 381 (618)
|++|||+||.||.+.+..+....|+++.++.||.+...+...+.+.++|+|||||+|.+.+. .+.+.+..+.++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999998 57788999999999999
Q ss_pred hhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHH
Q 007090 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (618)
Q Consensus 382 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~ 461 (618)
|++++++|...+..|+..+++.+|+++||||+|..+.++.+.-+.+|+.+.+.......+.+.|.|.+++. ..|..+|+
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99999999999999999999999999999999999999999999999999999888889999999999865 46778888
Q ss_pred HhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccE
Q 007090 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (618)
Q Consensus 462 ~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~ 541 (618)
.++... ....+||||++...+..++-.|+..|+.+..+||.|++..|.-+++.|++|.+.|||||++++||+|||.|++
T Consensus 293 ~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 887755 3479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCC
Q 007090 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (618)
Q Consensus 542 VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~ 596 (618)
|||||.|.+..+|+||+||++|+| ..|.+++|++.+|.....+|...+......
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaG-rsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAG-RSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccC-CCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999 789999999999999999998888877644
No 10
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-66 Score=530.69 Aligned_cols=394 Identities=44% Similarity=0.710 Sum_probs=367.7
Q ss_pred CeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCC
Q 007090 212 AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291 (618)
Q Consensus 212 ~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~ 291 (618)
.+.+.|...|.++..|.+..+.+.+..++...++..|+|+|+.++|.+..|++++.||+||||||.+|++|++.+++...
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ccc-----cCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc
Q 007090 292 ELQ-----KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK 366 (618)
Q Consensus 292 ~~~-----~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~ 366 (618)
... ....|.+||++|||+||.|++++.+++....+++++..|||.+...+...+.++|||+|||||+|.++++..
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 321 113599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceeEEEecchhhhhc-CCChHHHHHHHHhcCC----CccEEEEeccccHHHHHHHHHHcCC-CeEEEEcCccccc
Q 007090 367 ALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP----DRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMAN 440 (618)
Q Consensus 367 ~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~~----~~q~i~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~ 440 (618)
.+.|..+.++||||||+|++ ++|.++|+.|+..... .+|+++||||+|..++.++..|+.+ .+.+.++..+...
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 99999999999999999999 9999999999998854 7899999999999999999999987 8999999999999
Q ss_pred cceeEEEEEcCCCcccHHHHHHhcCCCC---CCC-----cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 007090 441 EDITQVVHVIPSDAEKLPWLLEKLPGMI---DDG-----DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEI 512 (618)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~ 512 (618)
.++.|.+..+.. ..|...|+++|.... ..+ +++|||.++..+..++..|...++++..|||..+|.+|.++
T Consensus 301 ~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 301 ENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred ccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 999999999865 467777777776443 234 79999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHH
Q 007090 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 513 ~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
+..|++|+..|||||++++||||||+|++||+||+|.+..+|+|||||+||.| ..|.++.||...+...+..|++.|.+
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~G-n~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVG-NGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCC-CCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 57999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhh
Q 007090 593 AGQNVSMELMDLAMK 607 (618)
Q Consensus 593 ~~~~v~~~l~~~~~~ 607 (618)
++|.||++|.+++..
T Consensus 459 a~q~vP~wl~~~~~~ 473 (482)
T KOG0335|consen 459 ANQEVPQWLSELSRE 473 (482)
T ss_pred hcccCcHHHHhhhhh
Confidence 999999999996544
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-66 Score=518.20 Aligned_cols=375 Identities=37% Similarity=0.574 Sum_probs=344.4
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
..+|.+++|+..+++++...||..|||||.++||..+.|+|++.||.||||||.+|++|+|.+++-.|.. ....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 3689999999999999999999999999999999999999999999999999999999999999877643 34678999
Q ss_pred EcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEecchh
Q 007090 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEAD 382 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~iIvDEah 382 (618)
|||||+||.|++...++++....+.++.++||.+...|...|+..+||+|+|||+|++.+.+ ..+++.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 57889999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCC--CcccHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWL 460 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~--~~~k~~~l 460 (618)
+|++.+|..++..|++.|+..||+++|||||+..+..|++--+..|+++.+..........+|.|..+.. ...+-..+
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999988888888898877653 23344555
Q ss_pred HHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCcc
Q 007090 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (618)
Q Consensus 461 ~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~ 540 (618)
..++... -...++||+.++..|.++.-.|--.|++++-+||.++|.+|.+.++.|+++.++|||||++++|||||++|.
T Consensus 418 ~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 418 ASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 5555444 357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHc-----CCCCCHHHH
Q 007090 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA-----GQNVSMELM 602 (618)
Q Consensus 541 ~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~-----~~~v~~~l~ 602 (618)
+||||.+|.++..|+||+||+.|+| +.|.+++|+...|..++..|++.-..+ +..+|++.+
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAG-RaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~I 562 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAG-RAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVI 562 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcc-cCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHH
Confidence 9999999999999999999999999 689999999999999999999985333 345666554
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-65 Score=550.27 Aligned_cols=373 Identities=46% Similarity=0.726 Sum_probs=342.5
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
..|.++++++.+++.+.+.||..|||+|.+++|.++.|+|++++++||||||++|++|++.++.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999976431 111122 9999
Q ss_pred cccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 007090 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~ 383 (618)
+|||+||.|+++.+.+++... ++++.+++||.+...+...+..+++|+|+||++|++++.+..+.++.+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccc--cccceeEEEEEcCCCcccHHHHH
Q 007090 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEKLPWLL 461 (618)
Q Consensus 384 ~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~i~q~~~~~~~~~~k~~~l~ 461 (618)
|++++|...+..|+..+++++|+++||||+|..+..+++.++.+|..+.+..... ....+.|.+..+.....|+..|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888885444 78899999999976556888888
Q ss_pred HhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccE
Q 007090 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (618)
Q Consensus 462 ~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~ 541 (618)
.++... ...++||||+++..++.++..|...|+++..|||+++|.+|.++++.|++|+.+|||||++++|||||++|.+
T Consensus 266 ~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 887654 3347999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCc-cHHHHHHHHHHHHHc---CCCCCHHHH
Q 007090 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAA---GQNVSMELM 602 (618)
Q Consensus 542 VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~-d~~~~~~i~~~l~~~---~~~v~~~l~ 602 (618)
|||||+|.+++.|+||+||+||+| ..|.+++|+++. +...+..|.+.+... ...+|....
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG-~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAG-RKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred eEEccCCCCHHHheeccCccccCC-CCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 999999999999999999999999 689999999986 899999999988665 345554433
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-62 Score=456.73 Aligned_cols=376 Identities=33% Similarity=0.558 Sum_probs=349.4
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCe
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (618)
-.++.+|++++|+..+++.+...||.+|+.+|+.|++.|+.|+|++.++..|+|||.+|.+.++..+-- ......
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-----~~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-----SVRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc-----ccceee
Confidence 367789999999999999999999999999999999999999999999999999999887776655421 122466
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecc
Q 007090 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (618)
Q Consensus 301 vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDE 380 (618)
+||+.|||+||.|+.+.+..++..+++.+..+.||.+..+.++++..|.+++.+|||++.+++++..+.-+.+.++|+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred hhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHH
Q 007090 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (618)
Q Consensus 381 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l 460 (618)
||.|++.+|..++..++..++|..|++++|||+|..+.+..+.|+.+|+++.+...+.....|+|.|..++.+.-|+..|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776677777
Q ss_pred HHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCcc
Q 007090 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (618)
Q Consensus 461 ~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~ 540 (618)
..+...+ .=.+.+||||++..++.|.+.++..++.+.+.||+|++++|..++..|++|+.+|||+|++-+||+|+|.|+
T Consensus 258 cdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 258 CDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 7665432 335889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHH
Q 007090 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603 (618)
Q Consensus 541 ~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~ 603 (618)
.|||||+|.+.+.|+|||||.||.| +.|+++-|+...|...+.+|.+.+.-.-.++|-.+.+
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFG-RkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFG-RKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccC-CcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 9999999999999999999999999 6799999999999999999999999888888876544
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5.1e-61 Score=481.00 Aligned_cols=362 Identities=38% Similarity=0.556 Sum_probs=332.6
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
+...|.+..|++..+++++.+||..+|++|+..++.++.|+|+++.|.||+|||++|++|++.++++.+...+ ++-.+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEE
Confidence 3456788899999999999999999999999999999999999999999999999999999999988764433 688899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecc
Q 007090 303 ICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDE 380 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~~~~iIvDE 380 (618)
||||||+||.|++.+++++...+ ++.+..+.||.+......++.++++|+|+|||+|.+.+++... ..+...++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999999988 9999999999999988889999999999999999999987543 345567999999
Q ss_pred hhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCC-CeEEEEcCcc--ccccceeEEEEEcCCCcccH
Q 007090 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEVG--MANEDITQVVHVIPSDAEKL 457 (618)
Q Consensus 381 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~--~~~~~i~q~~~~~~~~~~k~ 457 (618)
||++++++|...+..|+..++..+|+++||||.|+.++.+++..+.. |+.+.+...+ .+...+.|.+.+.+.. .++
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f 317 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRF 317 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc-chH
Confidence 99999999999999999999999999999999999999999988765 7777765443 5567889988888654 558
Q ss_pred HHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcC
Q 007090 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (618)
Q Consensus 458 ~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~ 537 (618)
-.+...|++.....+|||||+|......++..|+...++|..|||+.+|..|..+...|++.+.-|||||++++||+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 88889998877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHH
Q 007090 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (618)
Q Consensus 538 ~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~ 587 (618)
+|+.||.||+|.++.+|+||+||+||.| +.|.++.|+.+++..++..|.
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~g-k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREG-KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccC-CCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999998 789999999999999998886
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-59 Score=503.96 Aligned_cols=366 Identities=37% Similarity=0.583 Sum_probs=330.0
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc--cCCCCeEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIGV 302 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~vL 302 (618)
.+|.+++|++.+++.+...||..|+|+|++++|.+++|+|++++||||||||++|++|++.+++..+... ...++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999987654321 23468999
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
||+|||+||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++....+.+..+.+|||||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 99999999999999999999988999999999998888888888889999999999999998888889999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCC--CccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~--~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l 460 (618)
+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+.+. ....|...|
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~l 246 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRLL 246 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHHH
Confidence 99999999999999999874 578899999999999999999999999888776655556666665544 345677777
Q ss_pred HHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCcc
Q 007090 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (618)
Q Consensus 461 ~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~ 540 (618)
..++... ...++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+++|||||++++||+|+|+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 7766543 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHc
Q 007090 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (618)
Q Consensus 541 ~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~ 593 (618)
+||+||+|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G-~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAG-ASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCC-CCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999 679999999999988888887666544
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1e-58 Score=499.98 Aligned_cols=365 Identities=39% Similarity=0.650 Sum_probs=327.5
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc-cCCCCeEEEE
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVIC 304 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vLIl 304 (618)
+|++++|++.+++.|.+.||..|||+|.+++|.+++++|+|+++|||+|||++|++|++.++....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999986543221 1234689999
Q ss_pred cccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 007090 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~ 384 (618)
+|||+||.|+.+.+..+....++++..++||.+...+...+..+++|+|+||++|.+++......++.+.+|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999988888888889999999999999999888888999999999999999
Q ss_pred hcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhc
Q 007090 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (618)
++++|...+..++..++..+|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.. ..+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888876665566677777766643 33444444444
Q ss_pred CCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE
Q 007090 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (618)
Q Consensus 465 ~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~ 544 (618)
.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|||+|++||+
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 32 23468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHc
Q 007090 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (618)
Q Consensus 545 ~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~ 593 (618)
|++|.++..|+||+||+||.| ..|.|++|++..|...+..+.+.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g-~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAA-ATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCC-CCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999 579999999999999998888776543
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-60 Score=454.16 Aligned_cols=365 Identities=35% Similarity=0.513 Sum_probs=327.0
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
....|..+||.+++.+.+...|+.+|||+|..|+|.|+.|+|+|.||.||||||.+|.+|+|+.+.+.| .|-.+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 457899999999999999999999999999999999999999999999999999999999999998765 577899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc----ccccCceeEEEe
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVL 378 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~----~~~l~~~~~iIv 378 (618)
|++|||+||.|+.+.+..+.+..++++.+++||...-.+...|...+|++|+|||+|.+.+..+ ...+.++.++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999999999999999999999998999999999999999999998765 234788999999
Q ss_pred cchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCC--CeEEEEcCccccccceeEEEEEcCCCccc
Q 007090 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (618)
Q Consensus 379 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~~i~q~~~~~~~~~~k 456 (618)
||||++++..|...+..++..++..||+++||||++..+..+..--... ...+.............|.|..++ ...|
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~-~~vk 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS-IDVK 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc-hhhh
Confidence 9999999999999999999999999999999999998876665443333 222233333345556677777775 4578
Q ss_pred HHHHHHhcCCCCC--CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccC
Q 007090 457 LPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (618)
Q Consensus 457 ~~~l~~~l~~~~~--~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 534 (618)
-.+++..|....+ ++.++||+++...|+.|+..|+...+.+..+||.|+|.+|..++..|+++..+|||||++++||+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 8888888887655 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcC
Q 007090 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594 (618)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~ 594 (618)
|||.|..|||||.|..|.+|+||+||+.|+| +.|.++++++..|...+..|.+.+....
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAG-R~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAG-RKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhccc-CCcceEEEechhhHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999 6799999999999999888877665543
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.4e-58 Score=499.27 Aligned_cols=359 Identities=40% Similarity=0.624 Sum_probs=326.5
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
.+|.+++|++.+++.+...||..|+|+|.+++|.+++|+|+++++|||+|||++|++|++.++... ..++.+||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987432 235689999
Q ss_pred cccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 007090 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~ 383 (618)
+|||+||.|+.++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+....++++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987654 7899999999999999888889999999999999999988888899999999999999
Q ss_pred hhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHh
Q 007090 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (618)
Q Consensus 384 ~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (618)
|++++|...+..++..+++.+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.+..+... .|...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~-~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPD-ERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876543 344577777766543 477777777
Q ss_pred cCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEE
Q 007090 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (618)
Q Consensus 464 l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI 543 (618)
+... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 237 l~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 7533 456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHH
Q 007090 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 544 ~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
+|++|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g-~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAG-SKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EecCCCCHhHhhhhcccccCCC-CcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999 57999999999998888887776544
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.9e-58 Score=505.20 Aligned_cols=366 Identities=37% Similarity=0.605 Sum_probs=327.6
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc--cCCCCeEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIGV 302 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~vL 302 (618)
.+|.+++|++.+++.|.+.||..|+|+|.++||.++.|+|+++++|||||||++|++|++.+++..+... ...++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999987654221 22368999
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-ccccCceeEEEecch
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~l~~~~~iIvDEa 381 (618)
||+||++||.|+++.+.++....++++..++||.....+...+..+++|||+||++|.+++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998899999999999988888888888999999999999998764 467889999999999
Q ss_pred hhhhcCCChHHHHHHHHhcCC--CccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHH
Q 007090 382 DRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (618)
Q Consensus 382 h~~~~~~~~~~i~~i~~~~~~--~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (618)
|+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.+... ....|...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHH
Confidence 999999999999999998876 789999999999999999999999988877765555556667766554 34567777
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCc
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v 539 (618)
+..++... ...++||||+++..++.|++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++||||++|
T Consensus 248 L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 77776542 35689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHc
Q 007090 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (618)
Q Consensus 540 ~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~ 593 (618)
++||+|++|.++..|+||+||+||.| +.|.|++|++..+...+.+|.+.+...
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G-~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLG-EEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCC-CCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999 579999999999988888887766543
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-58 Score=459.46 Aligned_cols=356 Identities=36% Similarity=0.550 Sum_probs=316.4
Q ss_pred CCccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 225 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
.+|++++ |.++++.++...||...||+|..++|.++.++|+++.++||||||++|++|++.-++..........-.+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 44999999999999999999999999999999999999999999999999999998655332222234689
Q ss_pred EEcccHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccc--cCceeEEEe
Q 007090 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALT--MSRVTYLVL 378 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~--l~~~~~iIv 378 (618)
||+|||+||.||.+.+..|... ..+++.+++||.+..+.+..+. .++.|+|||||+|.+++.+.... +++++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999887 6889999999999988888776 47899999999999999875444 459999999
Q ss_pred cchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccc--cccceeEEEEEcCCCccc
Q 007090 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEK 456 (618)
Q Consensus 379 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~i~q~~~~~~~~~~k 456 (618)
||||++++++|..+++.|++.++++|+|=+||||....+..+++..++||+.+.++..+. ++......|..+ .+..|
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~-~a~eK 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC-EADEK 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe-cHHHH
Confidence 999999999999999999999999999999999999999999999999999999988765 455555666666 46789
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccC
Q 007090 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (618)
Q Consensus 457 ~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 534 (618)
+..++.+|... ...++|||.+|...++.....|... ...+..+||.+++..|..++..|......||+||++++|||
T Consensus 243 ~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 99999988763 4579999999999999999888765 67899999999999999999999998889999999999999
Q ss_pred CcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHH
Q 007090 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (618)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~ 583 (618)
|||+|++||+||+|.+++.|+||+||++|+| +.|.+++|+.+.+..+.
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~g-r~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAG-REGNAIVFLNPREEAYV 369 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhcc-CccceEEEecccHHHHH
Confidence 9999999999999999999999999999999 57999999999765543
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.6e-58 Score=504.83 Aligned_cols=361 Identities=40% Similarity=0.650 Sum_probs=328.5
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
..+|.+++|++.++++|.+.||..|+|+|.++||.++.++|+|++||||+|||++|++|++..+... ..+|++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999887432 24688999
Q ss_pred EcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
|+|||+||.|+++.+.++.... ++.++.++||.+...+...+..+++|||+||++|.+++.+..+.++.+.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999998765 789999999999888888888899999999999999998888889999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (618)
+|++++|...+..++..++..+|+++||||+|+.+..++..|+.+|..+.+.........+.|.+..+. ...|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec-hhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887766666667777776664 3457777777
Q ss_pred hcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEE
Q 007090 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (618)
Q Consensus 463 ~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~V 542 (618)
.+... ...++||||+++..+..++..|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 76543 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHH
Q 007090 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 543 I~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
|+||+|.++..|+||+||+||.| +.|.|++|+++.+...+..|.+.+..
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaG-r~G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCC-CcceEEEEechHHHHHHHHHHHHhCC
Confidence 99999999999999999999999 67999999999988888877666443
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-57 Score=488.30 Aligned_cols=364 Identities=37% Similarity=0.605 Sum_probs=331.0
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~ 305 (618)
+|+++++++.+++.+...||..|+++|.++++.++.|+|+++++|||+|||++|++|++.++...+.. ...++++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999999765322 23357899999
Q ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 306 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
||++||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++....+.+..+.+|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999988999999999999888877788889999999999999998888889999999999999999
Q ss_pred cCCChHHHHHHHHhcCCCccEEEEeccccH-HHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhc
Q 007090 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (618)
Q Consensus 386 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (618)
+++|...+..+...++..+|+++||||++. .+..+...++.+|+.+...........+.+.+...+....+...+..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999999999999999985 5888899999999988877666666677787777765566777777766
Q ss_pred CCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE
Q 007090 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (618)
Q Consensus 465 ~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~ 544 (618)
.. ...+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 241 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 241 KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE
Confidence 53 24578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHH
Q 007090 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 545 ~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
|++|.++..|+||+||+||.| ..|.+++|++..|...+..+.+.+..
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g-~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAG-RKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred ECCCCCHHHHhhcccccccCC-CCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 57999999999999999888876654
No 23
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-58 Score=464.52 Aligned_cols=363 Identities=33% Similarity=0.527 Sum_probs=328.2
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeE
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 301 (618)
..+..|.+++|+++.++.|...+|..+|.+|+++||..++|+|+|..+.||||||++|++|+|.+++.. .+...+|-.+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCcee
Confidence 445789999999999999999999999999999999999999999999999999999999999998753 3456678899
Q ss_pred EEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEecc
Q 007090 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDE 380 (618)
Q Consensus 302 LIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~iIvDE 380 (618)
|||.|||+||.|+++.+.+.++.+.+.++.++||........++ ++++|+|||||+|+..+.. ..+..+.+.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999998866554444 4599999999999998865 466778899999999
Q ss_pred hhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCc--cccccceeEEEEEcCCCcccHH
Q 007090 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV--GMANEDITQVVHVIPSDAEKLP 458 (618)
Q Consensus 381 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~q~~~~~~~~~~k~~ 458 (618)
||+|++|+|..++..|++.+++.|||++||||.+..+..+++--+.+|..|.+... ...+....|.|..++. ..|+.
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~ 302 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKID 302 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHH
Confidence 99999999999999999999999999999999999999999999999999888733 4566778888888864 57999
Q ss_pred HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCc
Q 007090 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (618)
Q Consensus 459 ~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi 536 (618)
.|...|... .+.++|||+.|..++..++..|.+. |+++.+|||.|+|..|..++..|...+..||+||++++||||+
T Consensus 303 ~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 303 MLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 999998866 3468999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCcc-HHHHHHHHHH
Q 007090 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNS 589 (618)
Q Consensus 537 ~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d-~~~~~~i~~~ 589 (618)
|.|++||.||+|.++.+|+||+||+.|.+ ..|.++.++++.+ ..++..|.+.
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~-~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYK-ERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhccc-CCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999998 5799999999987 5555555443
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-59 Score=442.41 Aligned_cols=367 Identities=30% Similarity=0.521 Sum_probs=338.2
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
..|+++.|+..++..+...||.+|+|+|.+++|..++|+|++.-|..|+|||.+|++|+|..+-.. .+.-.++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 679999999999999999999999999999999999999999999999999999999999987432 345568999
Q ss_pred cccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 007090 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~ 384 (618)
+|||+||.|+...+..+++..++.+....||++..+.+-++..+.+++|+||+++++++.+....++.+.++|+||||.+
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999998889999999999999999999999889999999999999999
Q ss_pred hcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhc
Q 007090 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (618)
++..|...+..++..+++.+|++++|||+|-.+..+...++.+|..+..- .......+.|.|.++.+ ..|...|-.++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e-~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEE-RQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeech-hhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999988754 34666788999988854 45665555554
Q ss_pred CCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE
Q 007090 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (618)
Q Consensus 465 ~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~ 544 (618)
.+. .=...+||||+...++.+++.+.+.|+++..+|+.|-|..|.++++.|++|.++.||||+.+.||+||+.|+.|||
T Consensus 318 skL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 432 3458899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHH
Q 007090 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (618)
Q Consensus 545 ~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~ 600 (618)
||.|.+.++|+||+||.||.| ..|.|+.|++-.|...+.+|.+-|-..-..+|+.
T Consensus 397 FDfpk~aEtYLHRIGRsGRFG-hlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFG-HLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred cCCCCCHHHHHHHccCCccCC-CcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 999999999999999999999 5799999999999999999998888777777753
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-55 Score=476.24 Aligned_cols=379 Identities=39% Similarity=0.583 Sum_probs=332.3
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc--cCCCC
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGP 299 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~ 299 (618)
.....|.+++|++.+++.|.+.||..|+++|.++++.+++|+|+|++++||||||++|++|++..+...+... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456889999999999999999999999999999999999999999999999999999999999987654221 12358
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIv 378 (618)
++|||+||++||.|+++.+..+....++++..++||.....+...+. ..++|+|+||++|..++......++++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 89999999999999999999999888999999999988877777665 46899999999999998887888999999999
Q ss_pred cchhhhhcCCChHHHHHHHHhcCC--CccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCccc
Q 007090 379 DEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (618)
Q Consensus 379 DEah~~~~~~~~~~i~~i~~~~~~--~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k 456 (618)
||||++++++|...+..++..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.+..+.. ..+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhH
Confidence 999999999999999999998854 67999999999999999999999999888776665555666676665543 456
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCc
Q 007090 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (618)
Q Consensus 457 ~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi 536 (618)
...+..++... ...++||||+++..++.++..|...++.+..+||++++.+|.++++.|++|+++|||||+++++|+||
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 66666666532 34589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcC-CC-CCHHHHH
Q 007090 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG-QN-VSMELMD 603 (618)
Q Consensus 537 ~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~-~~-v~~~l~~ 603 (618)
+++++||+|++|.++..|+||+||+||.| +.|.+++|++..|..++..+.+.+.... .. .|.+|+.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g-~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAG-ASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCC-CCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999 5799999999999998999888776654 33 4445543
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-56 Score=447.96 Aligned_cols=367 Identities=36% Similarity=0.552 Sum_probs=315.3
Q ss_pred CCccCCccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCC-ccccCCC
Q 007090 221 PRPVKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEG 298 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~ 298 (618)
|-.-..|..+||.+.+...|.. +++..||.+|+++||.+++|+|+++.++||||||++|++|++.++.... ......|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 3445679999999999999975 5999999999999999999999999999999999999999999998765 4567789
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEE
Q 007090 299 PIGVICAPTRELAHQIYLETKKFAKSHG-IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYL 376 (618)
Q Consensus 299 ~~vLIl~Ptr~La~q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~i 376 (618)
+.+|||+|||+||.|+++.++++.+++. +.-+++.||..+.....++++|++|+|+|||+|.+.+.+ ..+.++++.+|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 9999999999999999999999988653 445678899998888889999999999999999999976 46678899999
Q ss_pred EecchhhhhcCCChHHHHHHHHhcC-------------CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCc-------
Q 007090 377 VLDEADRMFDLGFEPQIRSIVGQIR-------------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV------- 436 (618)
Q Consensus 377 IvDEah~~~~~~~~~~i~~i~~~~~-------------~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~------- 436 (618)
|+||||+++++||+..|..|++.+. +++|.+++|||++..++.++..-+.+|+.|.....
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999988772 24799999999999999999999999998872111
Q ss_pred ------------------cccccceeEEEEEcCCCcccHHHHHHhcCCC---CCCCcEEEEcCChhHHHHHHHHHHhC--
Q 007090 437 ------------------GMANEDITQVVHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQK-- 493 (618)
Q Consensus 437 ------------------~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~---~~~~~vLVF~~~~~~~~~l~~~L~~~-- 493 (618)
..++....|.+.+++. .-++..|..+|... ....++|||+.+.+.++.=+..|...
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp-KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP-KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCC-chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 1223345677777753 34555555554432 23458999999999988877777642
Q ss_pred --------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHH
Q 007090 494 --------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553 (618)
Q Consensus 494 --------------------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~ 553 (618)
+.++..|||+|+|++|..+++.|...+..||+||++++||||+|.|+.||.||+|.++.+
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 456999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHH
Q 007090 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (618)
Q Consensus 554 y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~ 589 (618)
|+||+||+.|+| ..|.++.|+.+.+..++..|...
T Consensus 531 ylHRvGRTARaG-~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 531 YLHRVGRTARAG-EKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHhhhhhhcc-CCCceEEEecccHHHHHHHHHhh
Confidence 999999999999 56999999999998877666544
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-56 Score=439.05 Aligned_cols=367 Identities=33% Similarity=0.539 Sum_probs=328.6
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCcc-ccCCCCeEEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVI 303 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vLI 303 (618)
.+|++++|++++++++.+.|+.+||-+|+.+||.++.|+|++..|.||||||.+|++|++..++..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876544 4567899999
Q ss_pred EcccHHHHHHHHHHHHHHHhhc--CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc-cccCceeEEEecc
Q 007090 304 CAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDE 380 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-~~l~~~~~iIvDE 380 (618)
++|||+||+|++..+.++.... .+++..+....+.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999999986644 356666665666666667778889999999999999998776 6688999999999
Q ss_pred hhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccc-eeEEEEEcCCCcccHHH
Q 007090 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANED-ITQVVHVIPSDAEKLPW 459 (618)
Q Consensus 381 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~-i~q~~~~~~~~~~k~~~ 459 (618)
||-++..||...+..+.+++++..|.++||||+...++.+-..+|++|+.+........+++ +.|....+ +..+|+..
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~c-se~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKC-SEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEe-ccchhHHH
Confidence 99999999999999999999999999999999999999999999999999988877766554 45555555 47889999
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----------
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD----------- 528 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~----------- 528 (618)
+..+++-.+-.|++|||+|+...+.++.-.|.+.|++.++++|.++...|-.++++|+.|-+.|||||+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 888887666789999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------cccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHH
Q 007090 529 ------------------------VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (618)
Q Consensus 529 ------------------------~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~ 584 (618)
-++||||+..|.+|+|||+|.++..|+||+||++|.| ++|++.+|+++.+.....
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~-n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN-NKGTALSFVSPKEEFGKE 416 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCC-CCCceEEEecchHHhhhh
Confidence 1359999999999999999999999999999999998 689999999999887666
Q ss_pred HHHHHHHHc
Q 007090 585 ELVNSLIAA 593 (618)
Q Consensus 585 ~i~~~l~~~ 593 (618)
.|...+...
T Consensus 417 ~le~~~~d~ 425 (569)
T KOG0346|consen 417 SLESILKDE 425 (569)
T ss_pred HHHHHHhhH
Confidence 666666553
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-54 Score=462.78 Aligned_cols=371 Identities=33% Similarity=0.545 Sum_probs=328.8
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
...+|.++++++.+.+.+.+.||..|+|+|.++++.+++++++++++|||||||++|++|++.++... .+++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887421 2467899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
|++||++||.|+.+.+..++...++.+....|+.....+...+..+++|+|+||++|.+++......++++++|||||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 99999999999999999998877888888899988888888888889999999999999998877889999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (618)
++.++++...+..++..+++..|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.....+...+..
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877665555556667776666544445555555
Q ss_pred hcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEE
Q 007090 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (618)
Q Consensus 463 ~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~V 542 (618)
.+.. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 261 ~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 261 LYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 4433 235689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHH
Q 007090 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (618)
Q Consensus 543 I~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~ 600 (618)
|+|++|.++..|+||+||+||.| +.|.|+.|+++.+...+..+.+.+.......+..
T Consensus 340 I~~~~p~s~~~y~qr~GRagR~g-~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 340 INYDLPASPENYIHRIGRSGRFG-RKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EEECCCCCHHHEeecccccccCC-CCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999 6799999999999998888877776555554443
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-56 Score=450.20 Aligned_cols=370 Identities=33% Similarity=0.507 Sum_probs=312.3
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCcc------
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL------ 293 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~------ 293 (618)
+..+..|.+++++..++++|...||..||+||...+|.+..| .|+++.|+||||||++|-+|++..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 456788999999999999999999999999999999999999 7999999999999999999999955443211
Q ss_pred --ccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc---
Q 007090 294 --QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--- 368 (618)
Q Consensus 294 --~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--- 368 (618)
.....|..||++|||+||.|+..-+...+...++++..++||.....|.+-+...++|+|||||+|+.++..+..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 112234599999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred ccCceeEEEecchhhhhcCCChHHHHHHHHhcC-----CCccEEEEeccccHH---------------------HHHHHH
Q 007090 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPRK---------------------VEKLAR 422 (618)
Q Consensus 369 ~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~-----~~~q~i~~SAT~~~~---------------------~~~l~~ 422 (618)
+++.+.++||||||+|+..++...+..++..+. ..+|+++||||++-. ++.++.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 467789999999999999998888888888775 568999999998532 333333
Q ss_pred H--HcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q 007090 423 E--ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAAL 500 (618)
Q Consensus 423 ~--~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l 500 (618)
. +.+.|..+...........+......| ....|-.+|.-+|.. .+|++|||||+...+.+|+-+|+..++....|
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~L 493 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPL 493 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCchh
Confidence 3 233455555444333333333332333 223343333333433 48999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 501 ~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
|..|.|.+|.+.++.|++....|||||++|+||||||+|.|||||-.|.+.+-|+||.||+.|++ ..|..+.|+.+.+.
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~-~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARAN-SEGVSVMLCGPQEV 572 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccccccc-CCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 57999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 007090 581 RFAGELVNSLIAAG 594 (618)
Q Consensus 581 ~~~~~i~~~l~~~~ 594 (618)
..+..|++-|....
T Consensus 573 ~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999998765
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-54 Score=445.11 Aligned_cols=401 Identities=33% Similarity=0.523 Sum_probs=357.0
Q ss_pred HHHHHHhcCeeeccCCCCCccCCccc----cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHH
Q 007090 204 VMEYKKSLAIRVSGFDVPRPVKTFED----CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 204 ~~~~~~~~~~~~~~~~~p~p~~~~~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~ 279 (618)
....|+.+.+.+.|..+|.|+.+|.+ +.+.+++++++...+|..|+|+|.+++|.++.+++++.|+|||||||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 44567888999999999999999997 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH--hhcCceEEEEECCCChHHHH-HHHHcCCcEEEeCh
Q 007090 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA--KSHGIRVSAVYGGMSKLDQF-KELKAGCEIVIATP 356 (618)
Q Consensus 280 ~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~--~~~~~~~~~~~gg~~~~~~~-~~l~~~~dIiv~Tp 356 (618)
++|++.++..........|-+++|+.|||+||.|++.++.++. ...++++............. ......++|++.||
T Consensus 191 ~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 191 NLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred hhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 9999999987644334567889999999999999999999998 44444444333221111111 11123489999999
Q ss_pred HHHHHHHHccc--cccCceeEEEecchhhhhcC-CChHHHHHHHHhcC-CCccEEEEeccccHHHHHHHHHHcCCCeEEE
Q 007090 357 GRLIDMLKMKA--LTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (618)
Q Consensus 357 ~~L~~~l~~~~--~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~ 432 (618)
.++...+.... +.++.+.++|+||||+++.. .|..++..|+..|. ++..+-+||||++..+++++...+.+++.+.
T Consensus 271 ~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 271 MRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999997764 67899999999999999998 89999999998875 5677889999999999999999999999999
Q ss_pred EcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHH-HhCCCcEEEEeCCCCHHHHHH
Q 007090 433 VGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQL-AQKGFKAAALHGDKDQASRME 511 (618)
Q Consensus 433 ~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L-~~~~~~~~~l~g~~~~~~r~~ 511 (618)
++.....+..+.|....+.+...|+..+.+.+... -+.++|||+.+++.+..|...| .-.++.+.+|||..++.+|.+
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHH
Confidence 99999999999999999999999999999988765 3459999999999999999999 667899999999999999999
Q ss_pred HHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHH
Q 007090 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (618)
Q Consensus 512 ~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~ 591 (618)
+++.|+.|++.|||||++++||+|+.||+.|||||.|.+...|+||+||+||+| +.|+||+||+..|..++.-+++.++
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag-~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG-RSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCC-CCcceEEEeccccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred HcCCCCCHHHHHHHh
Q 007090 592 AAGQNVSMELMDLAM 606 (618)
Q Consensus 592 ~~~~~v~~~l~~~~~ 606 (618)
..|.+||++++.+.+
T Consensus 509 ~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKK 523 (593)
T ss_pred HcCCcchHHHHhhhh
Confidence 999999999998874
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-52 Score=402.49 Aligned_cols=372 Identities=32% Similarity=0.503 Sum_probs=329.8
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCe
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (618)
..++|++++|++++++.+..++|.+|+.||..++|.++.. +++|.++..|+|||.+|.|.||.++-.. -.-|.
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~PQ 162 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVPQ 162 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCCC
Confidence 4678999999999999999999999999999999999977 7999999999999999999999987432 23688
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEec
Q 007090 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLD 379 (618)
Q Consensus 301 vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~iIvD 379 (618)
++.|+|||+||.|+.+.+.+.++..+++..+.+.+.....- ..+ ..+|+|+||+.+.+++.+ .-+.+..+.++|+|
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlD 239 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLD 239 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEEEec
Confidence 99999999999999999999988888888887776521110 111 268999999999999977 67778899999999
Q ss_pred chhhhhcC-CChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHH
Q 007090 380 EADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (618)
Q Consensus 380 Eah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (618)
|||.|++. ||..+-..|...++++.|+++||||+...+..++..+..++..+.+.........|+|.+..+.....|+.
T Consensus 240 EAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~ 319 (477)
T KOG0332|consen 240 EADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQ 319 (477)
T ss_pred chhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHH
Confidence 99998876 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCC
Q 007090 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (618)
Q Consensus 459 ~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~ 538 (618)
.|.+ |.....=|..||||.++..+..|+..|...|+.|.++||.|...+|..++.+|+.|+.+|||+|++.+||+|++.
T Consensus 320 ~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~q 398 (477)
T KOG0332|consen 320 ALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQ 398 (477)
T ss_pred HHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccce
Confidence 9998 444555689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCC------CHHHHHHHHhhcccCCCCCeEEEEEecCc-cHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 007090 539 IKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAA-GQNVSMELMDL 604 (618)
Q Consensus 539 v~~VI~~~~p~------~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~-d~~~~~~i~~~l~~~-~~~v~~~l~~~ 604 (618)
|+.|||||+|. ++++|+|||||+||.| +.|.++.|+... ....+..|.+.+... ....|..+.++
T Consensus 399 Vs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG-kkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 399 VSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG-KKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred EEEEEecCCccccCCCCCHHHHHHHhccccccc-ccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99999999996 6899999999999999 689999999764 567777888888554 35556555544
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-53 Score=414.78 Aligned_cols=363 Identities=38% Similarity=0.591 Sum_probs=337.0
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
.-.|..+||+..++++|.+.||..|+|+|+..+|.++.+++++..+.||||||.+|++||+.++.... ..|-++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46899999999999999999999999999999999999999999999999999999999999987652 44788999
Q ss_pred EcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 007090 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~ 383 (618)
+.|||+||.|..+.++.+++..++++.+++||.+..+++..+..+.|||+|||+++..+.-.-.+.|+++.|||+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999887655567899999999999999
Q ss_pred hhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHh
Q 007090 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (618)
Q Consensus 384 ~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (618)
++.++|.+++..++..++..+|+++||||+|+.+-.+++.-+.+|+.+...............+..+. ...|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~-~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVR-KAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeec-cHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987666666666666666664 46789999999
Q ss_pred cCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEE
Q 007090 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (618)
Q Consensus 464 l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI 543 (618)
+.....+..++|||++..+++.+...|...|+.+..++|.+++..|...+..|..++..+||.|++++||+|||....||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 98877777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHH
Q 007090 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 544 ~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
|||.|....-|+||+||+.|+| ..|++|.|+.+++..++-+|-..|-.
T Consensus 335 nyd~p~~~klFvhRVgr~arag-rtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAG-RTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccCCCCCceEEEEecchhhcc-ccceEEEEEecccchhhhhhhhhcCC
Confidence 9999999999999999999999 67999999999999999888766543
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-51 Score=402.80 Aligned_cols=367 Identities=33% Similarity=0.547 Sum_probs=336.6
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
+.+|++++|++.|++.+...||.+|+.+|+.|+..+..|.|+++.+++|+|||.+|+++++.++-. ......+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 359999999999999999999999999999999999999999999999999999999999988622 122455899
Q ss_pred EcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
++|||+||.|+......+....+.++..+.||.+...+...+. .+.+|+++||+++.+++....+....+.++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999999999999998888999999999998886655555 468999999999999999888888889999999999
Q ss_pred hhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (618)
.|+..+|..++..++++++++.|++++|||+|+.+......|+.+|+.+.+...+.....++|.+..+.... |+..|..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887554 8877777
Q ss_pred hcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEE
Q 007090 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (618)
Q Consensus 463 ~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~V 542 (618)
+.. .-.+.+||||+...+..+...|...++.+.++||.+.+.+|..++..|+.|..+|||.|+.++||+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 776 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHH
Q 007090 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (618)
Q Consensus 543 I~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~ 600 (618)
|||++|.+.+.|+||+||+||.| .+|.++.+++..|...++++.+.+.-.-...|..
T Consensus 336 inydlP~~~~~yihR~gr~gr~g-rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFG-RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccC-CCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999 6799999999999999999987766555555543
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.3e-51 Score=418.03 Aligned_cols=353 Identities=31% Similarity=0.477 Sum_probs=320.7
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 220 ~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
.|.-...|+++.|...++..|...+|..|+++|..|||+++++.|+|+++..|+|||++|.+.++..+.. ....+
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~~~~ 94 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RSSHI 94 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----ccCcc
Confidence 4666778999999999999999999999999999999999999999999999999999998888776532 23468
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIv 378 (618)
..+||+|||++|.|+.+.+.+++.. .|++|.+++||+.......+++. ++|+|+|||+|..+++...++.+++.++|+
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 8999999999999999999999875 48999999999988887777765 899999999999999999999999999999
Q ss_pred cchhhhhcC-CChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcc--
Q 007090 379 DEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE-- 455 (618)
Q Consensus 379 DEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~-- 455 (618)
||||.+++. .|..+|..|++.++..+|++.||||.|.++..++..||++|..+.........-.|+|.+....+...
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchH
Confidence 999999884 59999999999999999999999999999999999999999999988888888889999888776532
Q ss_pred -----cHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 456 -----KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 456 -----k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
|+..|..++.+. +-.+.||||+....|+.++++|+..|+.|.+|.|.|+|.+|..++..+++-.++|||+|+..
T Consensus 254 eemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLt 332 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLT 332 (980)
T ss_pred HHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchh
Confidence 555666655543 34588999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 531 ~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
+||+|-+.|+.|||.|+|.+..+|.|||||+||.| ..|.+++|+.....
T Consensus 333 aRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG-~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 333 ARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG-AHGAAVTLLEDERE 381 (980)
T ss_pred hccCCccccceEEecCCCcchHHHHHHhhhccccc-ccceeEEEeccchh
Confidence 99999999999999999999999999999999999 46999999987644
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.5e-48 Score=436.93 Aligned_cols=345 Identities=19% Similarity=0.265 Sum_probs=273.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHH
Q 007090 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (618)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~L 310 (618)
.+++.+.+.|.+.|+.+|+++|.++++.+++|+|+++++|||||||++|++|++..+... .++++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998653 26789999999999
Q ss_pred HHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc----ccccCceeEEEecchhhhhc
Q 007090 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (618)
Q Consensus 311 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~----~~~l~~~~~iIvDEah~~~~ 386 (618)
|.|+...++++. ..++++..+.|+.+ ..+...+..+++|+|+||+.|...+... ...++++++|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 34678777666655 4555667778999999999987533221 12378899999999999876
Q ss_pred CCChHHHHHHHHhc-------CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCC-------
Q 007090 387 LGFEPQIRSIVGQI-------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------- 452 (618)
Q Consensus 387 ~~~~~~i~~i~~~~-------~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~------- 452 (618)
.|..++..++..+ ...+|++++|||+++..+ ++..+++.|+.+. ...+..... .+.....+.
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~~~~-~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSPRGA-RTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCCcCc-eEEEEecCCccccccc
Confidence 3776665555443 467899999999998754 6778888886553 222211111 222211111
Q ss_pred ---------CcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHH
Q 007090 453 ---------DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQK 515 (618)
Q Consensus 453 ---------~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~--------~~~~~~l~g~~~~~~r~~~~~~ 515 (618)
...+...+..++. ...++||||+++..++.++..|+.. +..+..+||++++.+|.++++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0123334444443 2569999999999999999998763 5678999999999999999999
Q ss_pred HhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC--ccHHHHHHHHHHHH
Q 007090 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ--KEARFAGELVNSLI 591 (618)
Q Consensus 516 F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~--~d~~~~~~i~~~l~ 591 (618)
|++|++++||||+++++||||+++++||+|+.|.++..|+||+||+||.| +.|.++++.+. .|..++..+.+.+.
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G-~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRG-QGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCC-CCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 57999998863 45555555544444
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.7e-47 Score=422.33 Aligned_cols=344 Identities=18% Similarity=0.289 Sum_probs=268.9
Q ss_pred Cccc--cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 226 TFED--CGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 226 ~~~~--~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
.|.. ++....+...++. .|+..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ++.+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4554 3444556555554 48999999999999999999999999999999999999999854 45699
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH------cCCcEEEeChHHHHH---HHHc--cccccC
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK------AGCEIVIATPGRLID---MLKM--KALTMS 371 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~dIiv~Tp~~L~~---~l~~--~~~~l~ 371 (618)
||+|+++|+.+++..+.. .++.+..+.++....++...+. ...+|+|+||++|.. ++.. ......
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999865555444 3899999999988776654443 358999999999862 2211 111234
Q ss_pred ceeEEEecchhhhhcCC--ChHHHHHH--HHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEE
Q 007090 372 RVTYLVLDEADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~--~~~~i~~i--~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~ 447 (618)
.+.+|||||||++.+|+ |.+.+..+ +...-+..++++||||+++.+...+...++....+.+ .......++ .+
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL--~y 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNL--WY 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccce--EE
Confidence 58899999999999998 66766643 4445578899999999999988776666543222111 112222232 23
Q ss_pred EEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec
Q 007090 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (618)
Q Consensus 448 ~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT 527 (618)
.++.........+...+.........||||.++..++.++..|...|+.+..+||+|++.+|..+++.|..|+++|||||
T Consensus 658 ~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 658 SVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred EEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 33332222234555555544345678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHH
Q 007090 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 528 ~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
.++++|||+|+|++||||++|.++..|+||+||+||.| .+|.|++|++..|...+..++.
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG-~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG-QRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC-CCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 6799999999988877766654
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-47 Score=382.80 Aligned_cols=353 Identities=30% Similarity=0.470 Sum_probs=282.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHh---------cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 233 STQLMHAISKQGYEKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 233 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~---------~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
...+.+.+.++++..+.|+|.+.+|+++ ..+|+++.||||||||++|.+|+++.+...+ -+.-++||
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavV 220 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVV 220 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEE
Confidence 3445566889999999999999999996 3589999999999999999999999887653 23467999
Q ss_pred EcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcC-----CcEEEeChHHHHHHHH-ccccccCceeEEE
Q 007090 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-----CEIVIATPGRLIDMLK-MKALTMSRVTYLV 377 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~dIiv~Tp~~L~~~l~-~~~~~l~~~~~iI 377 (618)
|+|||+|+.|++..+.+++...|+.|+.+.|-.+.....+.+.+. .||+|+|||+|.+.+. ...+.|+.+.++|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 999999999999999999999999988888887777776666643 4899999999999998 4678899999999
Q ss_pred ecchhhhhcCCChHHHHHHHHhcC----------------------------------CCccEEEEeccccHHHHHHHHH
Q 007090 378 LDEADRMFDLGFEPQIRSIVGQIR----------------------------------PDRQTLLFSATMPRKVEKLARE 423 (618)
Q Consensus 378 vDEah~~~~~~~~~~i~~i~~~~~----------------------------------~~~q~i~~SAT~~~~~~~l~~~ 423 (618)
|||||+|++..|...+-.++.++. +..+.+++|||+...-..+..-
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l 380 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL 380 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh
Confidence 999999987654333333332221 1235778899987766777777
Q ss_pred HcCCCeEEEEcC----ccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHH----hCCC
Q 007090 424 ILSDPVRVTVGE----VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA----QKGF 495 (618)
Q Consensus 424 ~~~~~~~i~~~~----~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~----~~~~ 495 (618)
-++.|-...+.. ....+..+.+..... +...|-..+..++... .-.++|+|+++...+.+++..|+ ...+
T Consensus 381 ~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~-~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 381 TLHIPRLFHVSKPLIGRYSLPSSLSHRLVVT-EPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hcCCCceEEeecccceeeecChhhhhceeec-ccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 777774433321 112222333333332 2334445555555543 34589999999999999999997 3367
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEe
Q 007090 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (618)
Q Consensus 496 ~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~ 575 (618)
++..+.|.++...|...+++|..|.+.||||+++++||+|+.+|+.|||||+|.+...|+||+||++|+| ..|.||+++
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAg-q~G~a~tll 537 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAG-QDGYAITLL 537 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccccc-CCceEEEee
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999 579999999
Q ss_pred cCccHHHHHHHHHHHHH
Q 007090 576 TQKEARFAGELVNSLIA 592 (618)
Q Consensus 576 ~~~d~~~~~~i~~~l~~ 592 (618)
+..+...+..+++....
T Consensus 538 ~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 538 DKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccchHHHHHHHHhcc
Confidence 99999888877776655
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-46 Score=406.41 Aligned_cols=327 Identities=20% Similarity=0.323 Sum_probs=258.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 242 ~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++.+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 358999999999999999999999999999999999999998753 456899999999999998887754
Q ss_pred HhhcCceEEEEECCCChHHHH---HHHH-cCCcEEEeChHHHHHHHH-cccc-ccCceeEEEecchhhhhcCC--ChHHH
Q 007090 322 AKSHGIRVSAVYGGMSKLDQF---KELK-AGCEIVIATPGRLIDMLK-MKAL-TMSRVTYLVLDEADRMFDLG--FEPQI 393 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~dIiv~Tp~~L~~~l~-~~~~-~l~~~~~iIvDEah~~~~~~--~~~~i 393 (618)
++.+..+.++....+.. ..+. ...+|+++||+++..... ...+ ....+.+|||||||++.+|+ |.+.+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 78888777776655332 2233 347999999999754221 1111 46789999999999999987 55655
Q ss_pred HHH--HHhcCCCccEEEEeccccHHHHHHHHHHcC--CCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC
Q 007090 394 RSI--VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (618)
Q Consensus 394 ~~i--~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~ 469 (618)
..+ +....+..++++||||+++.+...+...+. +|..+.. .....++... ...........+...+.....
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~--v~~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYE--VRRKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEE--EEeCCccHHHHHHHHHHHhcC
Confidence 543 333347889999999999987766655543 3433321 1112222222 222222344556665553333
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~ 549 (618)
...+||||+++..++.++..|...|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||+|++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHH
Q 007090 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (618)
Q Consensus 550 ~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~ 589 (618)
++..|+||+||+||.| ..|.|++|+++.|...+..++..
T Consensus 306 s~~~y~Qr~GRaGR~G-~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 SMESYYQESGRAGRDG-LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CHHHHHhhhcCcCCCC-CCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999 67999999999998888777654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4e-44 Score=397.52 Aligned_cols=330 Identities=19% Similarity=0.346 Sum_probs=257.8
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH
Q 007090 236 LMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (618)
Q Consensus 236 l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~ 314 (618)
....++. .||..|+|+|+++++.+++|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHHHH
Confidence 3344443 59999999999999999999999999999999999999999854 34589999999999999
Q ss_pred HHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC--
Q 007090 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-- 388 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-- 388 (618)
+..+..+ ++.+.++.++......... +. ...+++++||++|........+...++++|||||||++.+|+
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 8887765 7888877777666544322 22 347899999999874322223345578999999999999987
Q ss_pred ChHHHHHH--HHhcCCCccEEEEeccccHHHHHHHHHHc--CCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhc
Q 007090 389 FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (618)
Q Consensus 389 ~~~~i~~i--~~~~~~~~q~i~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (618)
|.+.+..+ +....+..+++++|||+++.....+...+ .+|... ... ....++. +..+. ...+...+...+
T Consensus 158 fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~r~nl~--~~v~~-~~~~~~~l~~~l 231 (607)
T PRK11057 158 FRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YTLVE-KFKPLDQLMRYV 231 (607)
T ss_pred ccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CCCCcce--eeeee-ccchHHHHHHHH
Confidence 55555433 23334678999999999988765544443 334322 211 1122222 12221 223445555555
Q ss_pred CCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE
Q 007090 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (618)
Q Consensus 465 ~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~ 544 (618)
... ...++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+.|+.+|||||+++++|+|+|+|++||+
T Consensus 232 ~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 232 QEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred Hhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 432 3568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHH
Q 007090 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 545 ~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
|++|.++..|+||+||+||.| .+|.|++|+++.|...+..++.
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~G-~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred eCCCCCHHHHHHHhhhccCCC-CCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999 6799999999999877766553
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.9e-44 Score=405.43 Aligned_cols=338 Identities=24% Similarity=0.361 Sum_probs=264.2
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
.|++++|++.+++.+...|+.+|+|+|.++++. +++++++++++|||||||++|.+|++.++. ++.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEE
Confidence 478889999999999999999999999999998 779999999999999999999999999884 26679999
Q ss_pred cccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 007090 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~ 384 (618)
+||++||.|+++.+.++.. .++++..+.|+...... ....++|+||||+++..++.+....+..+++|||||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998753 58899988887654432 2345899999999999988766667889999999999999
Q ss_pred hcCCChHHHHHHHHhc---CCCccEEEEeccccHHHHHHHHHHcCC-------CeEEEEcC--ccccccceeEEEEEcCC
Q 007090 385 FDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD-------PVRVTVGE--VGMANEDITQVVHVIPS 452 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~---~~~~q~i~~SAT~~~~~~~l~~~~~~~-------~~~i~~~~--~~~~~~~i~q~~~~~~~ 452 (618)
.+.+++..+..++..+ .+..|++++|||+++. ..++.++... |+.+..+. .........+.......
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9888888888776655 4788999999999753 4455444322 22111100 00000000000000011
Q ss_pred CcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC------------------------------------CCc
Q 007090 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------------GFK 496 (618)
Q Consensus 453 ~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~------------------------------------~~~ 496 (618)
.......+...+. .++++||||+++..++.++..|... ...
T Consensus 229 ~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 229 KDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred chHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1122233333332 4679999999999999998888643 136
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----cC-----CCCCHHHHHHHHhhcccCC-C
Q 007090 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-----IARDMDMHVHRIGRTGRAG-D 566 (618)
Q Consensus 497 ~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~----~~-----~p~~~~~y~Qr~GR~gR~g-~ 566 (618)
++.+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ |+ .|.++.+|.||+||+||.| +
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 899999999999999999999999999999999999999999999997 66 5889999999999999999 3
Q ss_pred CCeEEEEEecCcc
Q 007090 567 KDGTAYTLVTQKE 579 (618)
Q Consensus 567 ~~g~~~~l~~~~d 579 (618)
..|.|+.+....+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 4599999987653
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.5e-43 Score=404.30 Aligned_cols=357 Identities=21% Similarity=0.278 Sum_probs=257.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc-cCCCCeEEEEcccHHH
Q 007090 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVICAPTREL 310 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vLIl~Ptr~L 310 (618)
+++.+.+.+.. +|..|+|+|.++++.+++|+++++++|||||||++|++|++.+++...... ..+++++|||+|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 55666666554 789999999999999999999999999999999999999999987543221 1357889999999999
Q ss_pred HHHHHHHHHH-------HHh----hc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc--ccCceeEE
Q 007090 311 AHQIYLETKK-------FAK----SH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--TMSRVTYL 376 (618)
Q Consensus 311 a~q~~~~~~~-------~~~----~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--~l~~~~~i 376 (618)
|.|+++.+.. ++. .. ++++...+|+.+.....+.+...++|+||||++|..++....+ .+.++.+|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886653 221 12 6678888999888777777778899999999999888755432 47899999
Q ss_pred EecchhhhhcCCChHHHHHHHHh----cCCCccEEEEeccccHHHHHHHHHHcCC-------CeEEEEcCccccccceeE
Q 007090 377 VLDEADRMFDLGFEPQIRSIVGQ----IRPDRQTLLFSATMPRKVEKLAREILSD-------PVRVTVGEVGMANEDITQ 445 (618)
Q Consensus 377 IvDEah~~~~~~~~~~i~~i~~~----~~~~~q~i~~SAT~~~~~~~l~~~~~~~-------~~~i~~~~~~~~~~~i~q 445 (618)
||||||.+.+..+..++...+.. ..+..|++++|||+++. ..++...... ++.+.... ......+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccC-CCccceEEE
Confidence 99999999987766665544433 33678999999999763 3444433221 22221110 000111110
Q ss_pred EE---EEc-CCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHH
Q 007090 446 VV---HVI-PSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQ 514 (618)
Q Consensus 446 ~~---~~~-~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~------~~~~~~l~g~~~~~~r~~~~~ 514 (618)
.. ... .........+...+.... ..+++||||+++..++.++..|+.. +..+.++||++++.+|..+++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 00 000 011111122222222221 2568999999999999999999873 467999999999999999999
Q ss_pred HHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEec-CccHHHHHHHHHHHH
Q 007090 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLI 591 (618)
Q Consensus 515 ~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~-~~d~~~~~~i~~~l~ 591 (618)
.|++|.++|||||+++++|+|++++++||+|+.|.++..|+||+||+||.+...+.++.+.. ..+......+++...
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~ 412 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAR 412 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987533333444433 333333333444333
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.7e-43 Score=392.09 Aligned_cols=322 Identities=20% Similarity=0.353 Sum_probs=259.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.+ +..+|||+|+++|+.|++..+..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 58999999999999999999999999999999999999999853 345899999999999998887765
Q ss_pred hhcCceEEEEECCCChHHHHHH---H-HcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC--ChHHHHHH
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKE---L-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEPQIRSI 396 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~---l-~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~--~~~~i~~i 396 (618)
++.+..+.++.+..+.... + ....+|+++||++|............++++|||||||++.+|+ |.+.+..+
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 7888888888766554332 2 2458999999999975443444456789999999999999887 66655544
Q ss_pred ---HHhcCCCccEEEEeccccHHHHHHHHHHcCC--CeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCC
Q 007090 397 ---VGQIRPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (618)
Q Consensus 397 ---~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~ 471 (618)
...+ +..+++++|||+++.+...+...++. +..+. . .....++. +.... ...+...+...+.... ..
T Consensus 154 ~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~nl~--~~v~~-~~~~~~~l~~~l~~~~-~~ 225 (591)
T TIGR01389 154 GSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFI-T--SFDRPNLR--FSVVK-KNNKQKFLLDYLKKHR-GQ 225 (591)
T ss_pred HHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-c--CCCCCCcE--EEEEe-CCCHHHHHHHHHHhcC-CC
Confidence 3333 45569999999999887766666542 32221 1 11122222 22222 2345666777665432 56
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCH
Q 007090 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (618)
Q Consensus 472 ~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (618)
++||||+++..++.++..|...|+++..+||+|++.+|..+++.|..|.++|||||+++++|+|+|+|++||+|++|.++
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHH
Q 007090 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 552 ~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
..|.|++||+||.| ..|.|+.++++.|...+..++.
T Consensus 306 ~~y~Q~~GRaGR~G-~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 306 ESYYQEAGRAGRDG-LPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred HHHhhhhccccCCC-CCceEEEecCHHHHHHHHHHHh
Confidence 99999999999999 6799999999998877666654
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-43 Score=397.83 Aligned_cols=339 Identities=22% Similarity=0.307 Sum_probs=265.4
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
+|.++++++.+.+.+.+.|+.+|+|+|.++++. +++++++++++|||||||++|.+|++.++... +.++|+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 567889999999999999999999999999985 88999999999999999999999999987642 5789999
Q ss_pred cccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 007090 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~ 384 (618)
+|+++||.|+++.+..+. ..++++..+.|+...... ....++|+|+||+++..++......++++++|||||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998864 468899999988765432 2356899999999999988776667899999999999999
Q ss_pred hcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC-ccc-----HH
Q 007090 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-AEK-----LP 458 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~-~~k-----~~ 458 (618)
.+.++...+..++.++....|++++|||+++ ...++.++....+............-..+.+...... ..+ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 9888999999999999999999999999975 3556654432211110000000000011111111111 011 12
Q ss_pred HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC---------------------------------CCcEEEEeCCCC
Q 007090 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALHGDKD 505 (618)
Q Consensus 459 ~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~---------------------------------~~~~~~l~g~~~ 505 (618)
.+.+.+. .++++||||+++..++.++..|... ...++.+||+++
T Consensus 230 ~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 230 LVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 2233332 3579999999999998887666421 235899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE-------cCCCC-CHHHHHHHHhhcccCC-CCCeEEEEEec
Q 007090 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------FDIAR-DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (618)
Q Consensus 506 ~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~-------~~~p~-~~~~y~Qr~GR~gR~g-~~~g~~~~l~~ 576 (618)
+.+|..+.+.|++|.++|||||+++++|+|+|.++.||. ++.|. .+.+|.||+||+||.| +..|.|++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999984 45444 5679999999999987 55799999988
Q ss_pred Ccc
Q 007090 577 QKE 579 (618)
Q Consensus 577 ~~d 579 (618)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 765
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3e-42 Score=379.99 Aligned_cols=315 Identities=21% Similarity=0.300 Sum_probs=247.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE-EcccHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKK 320 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~-dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI-l~Ptr~La~q~~~~~~~ 320 (618)
.||. |+|||.++++.++.|+ ++++++|||||||.++.++++.. . .....|+.|| ++|||+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~----~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--E----IGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--c----ccccccceEEEeCchHHHHHHHHHHHHH
Confidence 4777 9999999999999998 57778999999998765444422 1 1123455665 77999999999999999
Q ss_pred HHhhc-----------------------CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc---------
Q 007090 321 FAKSH-----------------------GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--------- 368 (618)
Q Consensus 321 ~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--------- 368 (618)
+++.+ ++++..++||.+...++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 98755 4888999999999999999999999999995 44444443
Q ss_pred -------ccCceeEEEecchhhhhcCCChHHHHHHHHhc--CCC---ccEEEEeccccHHHHHHHHHHcCCCeEEEEcCc
Q 007090 369 -------TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPD---RQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (618)
Q Consensus 369 -------~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~--~~~---~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 436 (618)
.++.+++||||||| ++++|...+..|+..+ ++. +|+++||||++..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 6789999999999975 332 699999999998888888888888877666544
Q ss_pred cccccceeEEEEEcCCCcccHHHHHHhcCC--CCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHH----
Q 007090 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPG--MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM---- 510 (618)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~--~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~---- 510 (618)
......+.+.+. . ....|...++..+.. ....+++|||||++..++.+++.|++.++ ..+||.|++.+|.
T Consensus 239 ~l~a~ki~q~v~-v-~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RLAAKKIVKLVP-P-SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cccccceEEEEe-c-ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 444445555322 2 222333333332211 11356899999999999999999998876 8999999999999
Q ss_pred -HHHHHHhc----CC-------ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC
Q 007090 511 -EILQKFKS----GV-------YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 511 -~~~~~F~~----g~-------~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
.+++.|++ |. ..|||||+++++||||+. ++||++..| ++.|+||+||+||.|...+..+++++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 54 689999999999999986 899998766 689999999999999544555666643
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.8e-41 Score=384.69 Aligned_cols=360 Identities=18% Similarity=0.235 Sum_probs=269.9
Q ss_pred CccccCCCHHHHHHHHHhcCeeeccC--CC-----CCccCCccccCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcC--
Q 007090 193 SASISGMSEQDVMEYKKSLAIRVSGF--DV-----PRPVKTFEDCGFSTQLMHAISKQ-GYEKPTSIQCQALPIILSG-- 262 (618)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~~~--~~-----p~p~~~~~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~-- 262 (618)
.+.+..+....|...+....-.+... .+ -+....=..+..+..+...+... +| +|||+|.++++.++++
T Consensus 390 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~ 468 (926)
T TIGR00580 390 NPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADME 468 (926)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhc
Confidence 34577888888887776542222100 00 00000000123445666666554 66 6999999999999975
Q ss_pred ----CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCCh
Q 007090 263 ----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (618)
Q Consensus 263 ----~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 338 (618)
+|++++++||+|||.+|++|++..+.. +++++|++||++||.|+++.+.+++...++++..+.|+.+.
T Consensus 469 ~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~ 540 (926)
T TIGR00580 469 SPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSA 540 (926)
T ss_pred ccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccH
Confidence 799999999999999999999887643 67899999999999999999999988888898888888765
Q ss_pred HHH---HHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 339 LDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 339 ~~~---~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
.++ ...+.. .++|||+||.. + .....+.++++|||||+|++ .......+..+++..|+++||||+.
T Consensus 541 ~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpi 610 (926)
T TIGR00580 541 KEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPI 610 (926)
T ss_pred HHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCC
Confidence 443 333444 48999999943 2 34557889999999999984 3344566677788899999999988
Q ss_pred HHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC-
Q 007090 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK- 493 (618)
Q Consensus 415 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~- 493 (618)
+....+....+.++..+...... ...+.+.+.... ...-...+...+. ..++++||||+...++.+++.|++.
T Consensus 611 prtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~-~~~i~~~i~~el~---~g~qv~if~n~i~~~e~l~~~L~~~~ 684 (926)
T TIGR00580 611 PRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD-PELVREAIRRELL---RGGQVFYVHNRIESIEKLATQLRELV 684 (926)
T ss_pred HHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC-HHHHHHHHHHHHH---cCCeEEEEECCcHHHHHHHHHHHHhC
Confidence 77665655555566555433221 223444333221 1111122333332 3679999999999999999999985
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCC-CHHHHHHHHhhcccCCCCCeEE
Q 007090 494 -GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTA 571 (618)
Q Consensus 494 -~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~-~~~~y~Qr~GR~gR~g~~~g~~ 571 (618)
++++..+||.|++.+|..++..|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.| +.|.|
T Consensus 685 p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g-~~g~a 763 (926)
T TIGR00580 685 PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSK-KKAYA 763 (926)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCC-CCeEE
Confidence 78999999999999999999999999999999999999999999999999999875 6789999999999998 67999
Q ss_pred EEEecCc
Q 007090 572 YTLVTQK 578 (618)
Q Consensus 572 ~~l~~~~ 578 (618)
|.++...
T Consensus 764 ill~~~~ 770 (926)
T TIGR00580 764 YLLYPHQ 770 (926)
T ss_pred EEEECCc
Confidence 9999764
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-44 Score=330.68 Aligned_cols=335 Identities=28% Similarity=0.487 Sum_probs=288.7
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
..+.|.++-|++++++++...||..|+.+|.++||....|.|++++|..|.|||.+|++..|+.+-.- .....+|
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvl 114 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVL 114 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEE
Confidence 34568889999999999999999999999999999999999999999999999999999998887332 1245689
Q ss_pred EEcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecch
Q 007090 303 ICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEa 381 (618)
++|.||+||.|+.++..+|++.+ ++++.+++||.+.......+++.++|+|+|||+++.+.+.+.++++.+...|+|||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 99999999999999999998765 68999999999988888888888999999999999999999999999999999999
Q ss_pred hhhhcC-CChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcc-ccccceeEEEEEcCCCcccHHH
Q 007090 382 DRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPW 459 (618)
Q Consensus 382 h~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~q~~~~~~~~~~k~~~ 459 (618)
|.|+.+ +.+..+..+++..+...|+++||||++..+...++.|+.+|..+.+.... .......|.|..+.. ..|...
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke-~eKNrk 273 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE-NEKNRK 273 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-hhhhhh
Confidence 988754 57889999999999999999999999999999999999999999887643 445566677766643 456666
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCc
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v 539 (618)
+..+|... .-.+++||+.+.... . | ..+ ||||++++||+||..+
T Consensus 274 l~dLLd~L-eFNQVvIFvKsv~Rl------------------------------~-f---~kr-~vat~lfgrgmdierv 317 (387)
T KOG0329|consen 274 LNDLLDVL-EFNQVVIFVKSVQRL------------------------------S-F---QKR-LVATDLFGRGMDIERV 317 (387)
T ss_pred hhhhhhhh-hhcceeEeeehhhhh------------------------------h-h---hhh-hHHhhhhccccCcccc
Confidence 66665432 456899999886541 0 2 122 8999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC-ccHHHHHHHHHHHHHcCCCCCHH
Q 007090 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSME 600 (618)
Q Consensus 540 ~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~-~d~~~~~~i~~~l~~~~~~v~~~ 600 (618)
+.|||||+|.+..+|+||+||+||.| ..|.+++|++. +|...+..+...++..-..+|++
T Consensus 318 Ni~~NYdmp~~~DtYlHrv~rAgrfG-tkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 318 NIVFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeeeccCCCCCchHHHHHhhhhhccc-cccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999 56999999986 57888888888888777778877
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.3e-40 Score=385.48 Aligned_cols=358 Identities=18% Similarity=0.225 Sum_probs=268.7
Q ss_pred ccccCCCHHHHHHHHHhcCeeecc--CCC-----CCccCCccccCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcC---
Q 007090 194 ASISGMSEQDVMEYKKSLAIRVSG--FDV-----PRPVKTFEDCGFSTQLMHAI-SKQGYEKPTSIQCQALPIILSG--- 262 (618)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~--~~~-----p~p~~~~~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~--- 262 (618)
+.+.++....|..-|.+..-.+.. ..+ -+....=..+..+..++..+ ...+| .||++|.++++.++++
T Consensus 540 ~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~ 618 (1147)
T PRK10689 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQ 618 (1147)
T ss_pred CccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhc
Confidence 457788888888776644222210 000 00000000122334444444 44566 7999999999999987
Q ss_pred ---CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 263 ---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 263 ---~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
+|+++|++||+|||.+|+.+++..+. ++++++||+||++||.|+++.+.+.+...++++.++.|+.+..
T Consensus 619 ~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~ 690 (1147)
T PRK10689 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAK 690 (1147)
T ss_pred CCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHH
Confidence 89999999999999999888776652 3788999999999999999999998777788888888888877
Q ss_pred HHHHHHH----cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 340 DQFKELK----AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 340 ~~~~~l~----~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
++...+. .+++|+|+||+.+ .....+.++++|||||+|++ ++. ....+..+++++|+++||||+++
T Consensus 691 e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpip 760 (1147)
T PRK10689 691 EQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIP 760 (1147)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCH
Confidence 6654432 3589999999643 23456788999999999995 322 34556778889999999999988
Q ss_pred HHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC--
Q 007090 416 KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-- 493 (618)
Q Consensus 416 ~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~-- 493 (618)
....++...+.++..+...... ...+.+.+..+.....+ ..+...+ ...++++||||+...++.+++.|.+.
T Consensus 761 rtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k-~~il~el---~r~gqv~vf~n~i~~ie~la~~L~~~~p 834 (1147)
T PRK10689 761 RTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVR-EAILREI---LRGGQVYYLYNDVENIQKAAERLAELVP 834 (1147)
T ss_pred HHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHH-HHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 8888888888888776653322 22344443333211112 2222222 23689999999999999999999987
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCC-CCHHHHHHHHhhcccCCCCCeEEE
Q 007090 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGTAY 572 (618)
Q Consensus 494 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p-~~~~~y~Qr~GR~gR~g~~~g~~~ 572 (618)
++.+.++||+|++.+|.+++..|++|+.+|||||+++++|+|+|+|++||+.+.. .+...|.||+||+||.| +.|.||
T Consensus 835 ~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g-~~g~a~ 913 (1147)
T PRK10689 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYAW 913 (1147)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC-CceEEE
Confidence 7899999999999999999999999999999999999999999999999966543 36778999999999999 679999
Q ss_pred EEecC
Q 007090 573 TLVTQ 577 (618)
Q Consensus 573 ~l~~~ 577 (618)
.++..
T Consensus 914 ll~~~ 918 (1147)
T PRK10689 914 LLTPH 918 (1147)
T ss_pred EEeCC
Confidence 88754
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-41 Score=381.91 Aligned_cols=333 Identities=21% Similarity=0.304 Sum_probs=254.1
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~ 305 (618)
.|.+++|++.+++.+...++. |+++|.++++.+.+++++++++|||||||+++.++++.++.. +.++|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 467889999999999998886 999999999999999999999999999999999999887643 56799999
Q ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 306 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
|+++||.|+++.+.++. ..+.++....|+...... ....++|+|+||+++..++.+....+.++++|||||||.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 468888888887654332 23468999999999999887766678899999999999998
Q ss_pred cCCChHHHHHHHHh---cCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEE-----EEcCCCcccH
Q 007090 386 DLGFEPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV-----HVIPSDAEKL 457 (618)
Q Consensus 386 ~~~~~~~i~~i~~~---~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~-----~~~~~~~~k~ 457 (618)
+.++...+..++.. +++..|++++|||+++ ...++.++....+..... ...+.... ..+.......
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r-----~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFR-----PVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCC-----CCCeEEEEEecCeeeeccccccc
Confidence 88777777766554 4578899999999975 355665543221111100 00111000 0111111111
Q ss_pred HHHHHhcCCC-CCCCcEEEEcCChhHHHHHHHHHHhC-------------------------CCcEEEEeCCCCHHHHHH
Q 007090 458 PWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQK-------------------------GFKAAALHGDKDQASRME 511 (618)
Q Consensus 458 ~~l~~~l~~~-~~~~~vLVF~~~~~~~~~l~~~L~~~-------------------------~~~~~~l~g~~~~~~r~~ 511 (618)
..+...+... ...+++||||+++..++.++..|... ...++.+||++++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1122222221 23679999999999999999988653 124788999999999999
Q ss_pred HHHHHhcCCceEEEecccccccCCcCCccEEEEcCC---------CCCHHHHHHHHhhcccCC-CCCeEEEEEecCc
Q 007090 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI---------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (618)
Q Consensus 512 ~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~---------p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~ 578 (618)
+.+.|++|.++|||||+++++|+|+|+. .||+++. |.++.+|.||+||+||.| +..|.++.++...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999999999999985 5555443 457889999999999999 4467788876544
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.3e-40 Score=367.75 Aligned_cols=335 Identities=21% Similarity=0.284 Sum_probs=247.9
Q ss_pred HHHHHHHH-HCCCCCCcHHHHHHHHHHhcC------CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 234 TQLMHAIS-KQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 234 ~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~------~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
..+.+.+. ..+| +||++|.++++.+.++ .+++++++||||||++|++|++..+. +|.+++|++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEec
Confidence 34444444 3455 7999999999999877 48999999999999999999988763 3778999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH---HHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 307 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
|++||.|+++.+++++...++++..++|+.+..+ ....+.. .++|+|+||+.+.+ ...+.++++|||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 9999999999999999988999999999988543 3444555 49999999987743 3357889999999999
Q ss_pred hhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (618)
++. ...+..+.......++++||||+.+....+. .+++.....+.........+.+.+... .+...+..
T Consensus 394 rfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~~~~ 462 (681)
T PRK10917 394 RFG-----VEQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPD----SRRDEVYE 462 (681)
T ss_pred hhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCc----ccHHHHHH
Confidence 853 2223334444556899999999877644333 333322222222222223344333221 22233333
Q ss_pred hcCCCC-CCCcEEEEcCCh--------hHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 007090 463 KLPGMI-DDGDVLVFASKK--------TTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (618)
Q Consensus 463 ~l~~~~-~~~~vLVF~~~~--------~~~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 531 (618)
.+.... ...+++|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 333222 345899999954 3456777788765 57899999999999999999999999999999999999
Q ss_pred ccCCcCCccEEEEcCCCC-CHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcC
Q 007090 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594 (618)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~-~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~ 594 (618)
+|+|+|++++||+|+.|. +...|.||+||+||.| ..|.|+.+++.........-++.+....
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~ill~~~~~~~~~~~rl~~~~~~~ 605 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGA-AQSYCVLLYKDPLSETARERLKIMRETN 605 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCC-CceEEEEEECCCCChhHHHHHHHHHHhc
Confidence 999999999999999987 5788999999999998 5799999996432223333344555433
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.7e-39 Score=360.41 Aligned_cols=344 Identities=20% Similarity=0.263 Sum_probs=248.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH
Q 007090 236 LMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (618)
Q Consensus 236 l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 309 (618)
+...+...+| +||++|+.+++.++++ .+.+++++||||||++|++|++..+. ++++++|++||++
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~~ 295 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTEI 295 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHHH
Confidence 4455566677 7999999999999876 36899999999999999999988763 3678999999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHH---HHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 310 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
||.|+++.+.+++...++++..++|+..... ....+.. .++|+|+||+.+.. ...+.++++|||||+|++.
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 9999999999999888999999999987655 3344443 47999999987753 3457889999999999853
Q ss_pred cCCChHHHHHHHHhcC--CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHh
Q 007090 386 DLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (618)
Q Consensus 386 ~~~~~~~i~~i~~~~~--~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (618)
. .+...+..... ...++++||||+.+....+ ...++.....+.........+.+.+. .. . ....+...
T Consensus 371 ~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~--~~-~-~~~~~~~~ 440 (630)
T TIGR00643 371 V----EQRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLI--KH-D-EKDIVYEF 440 (630)
T ss_pred H----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEe--Cc-c-hHHHHHHH
Confidence 2 12222333322 2678999999987654332 22222211111111111222333322 11 1 22333433
Q ss_pred cCCCC-CCCcEEEEcCCh--------hHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 007090 464 LPGMI-DDGDVLVFASKK--------TTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (618)
Q Consensus 464 l~~~~-~~~~vLVF~~~~--------~~~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 532 (618)
+.... ...+++|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 33322 356899999976 4566777777653 788999999999999999999999999999999999999
Q ss_pred cCCcCCccEEEEcCCCC-CHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007090 533 GLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (618)
Q Consensus 533 Gldi~~v~~VI~~~~p~-~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~ 604 (618)
|+|+|++++||+++.|. +...|.||+||+||.| +.|.|+.++.........+..+.+......+...-.+|
T Consensus 521 GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl 592 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD-HQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDL 592 (630)
T ss_pred CcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC-CCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHH
Confidence 99999999999999986 6888999999999998 67999999943333333333455555444443333333
No 51
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.7e-40 Score=359.50 Aligned_cols=312 Identities=18% Similarity=0.214 Sum_probs=232.5
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCcHHHH---------HHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 250 SIQCQALPIILSGRDIIGIAKTGSGKTAA---------FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 250 ~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
.+|+++++.+++++++|++|+||||||.+ |++|.+..+.... ....++.++|++|||+||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999987 2223333221100 022356899999999999999999887
Q ss_pred HHhh---cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHH
Q 007090 321 FAKS---HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (618)
Q Consensus 321 ~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~ 397 (618)
..+. .+..+...+||... .+.....++.+|+|+|++. ....++.+++|||||||++...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 6543 35667888998763 2222223468999999752 11247889999999999976654 4556666
Q ss_pred HhcC-CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC--------cccHHHHHHhcCCC-
Q 007090 398 GQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD--------AEKLPWLLEKLPGM- 467 (618)
Q Consensus 398 ~~~~-~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~--------~~k~~~l~~~l~~~- 467 (618)
..+. ..+|+++||||++..+..+ ..++++|..+.+.. .....+.+.+...... ......+...+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 5543 3469999999999888776 57888888887653 2334555555322110 01111223333221
Q ss_pred -CCCCcEEEEcCChhHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHH-hcCCceEEEecccccccCCcCCccEEE
Q 007090 468 -IDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKF-KSGVYHVLIATDVAARGLDIKSIKSVV 543 (618)
Q Consensus 468 -~~~~~vLVF~~~~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F-~~g~~~VLVaT~~~~~Gldi~~v~~VI 543 (618)
...+.+||||+++.+++.+++.|.+. ++.+..+||++++. .++++.| ++|+.+|||||++++||+||++|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 13468999999999999999999887 79999999999985 4667777 689999999999999999999999999
Q ss_pred EcC---CCC---------CHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 544 NFD---IAR---------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 544 ~~~---~p~---------~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
++| .|. +.+.|+||+||+||.. +|.||+|+++.+.
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~--~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS--PGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCCC--CCeEEEEECHHHh
Confidence 998 565 7889999999999995 7999999998764
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=352.50 Aligned_cols=340 Identities=22% Similarity=0.313 Sum_probs=272.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
|++.+.+.+... |..|||.|.+++|.+++|+++|++||||||||+++.+|++..+.+........+-.+|+|.|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678888888887 9999999999999999999999999999999999999999999987533445678899999999999
Q ss_pred HHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc--cccCceeEEEecchhhhhcCCC
Q 007090 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGF 389 (618)
Q Consensus 312 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~--~~l~~~~~iIvDEah~~~~~~~ 389 (618)
+.+...+..++...|+.+.+.+|.++..+..+...+.+||+|+||+.|.-++.... -.|+.+.+|||||+|.+.+..-
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999998888877788889999999999998886532 3578999999999999987765
Q ss_pred hHHHHHHHHh---cCCCccEEEEeccccHHHHHHHHHHcCC--CeEEEEcCccccccceeEEEEEcC------CCcccHH
Q 007090 390 EPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIP------SDAEKLP 458 (618)
Q Consensus 390 ~~~i~~i~~~---~~~~~q~i~~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~~i~q~~~~~~------~~~~k~~ 458 (618)
+.++..-+.+ +.++.|.|++|||..+. ...++...+. +..+.... .....++.-..-... .......
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~-~~k~~~i~v~~p~~~~~~~~~~~~~~~~ 244 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS-AAKKLEIKVISPVEDLIYDEELWAALYE 244 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcc-cCCcceEEEEecCCccccccchhHHHHH
Confidence 6555533333 33488999999999743 5556665555 33333221 122222221111111 0112233
Q ss_pred HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcC
Q 007090 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (618)
Q Consensus 459 ~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~-~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~ 537 (618)
.+.+++.+ ...+|||+||+..++.++..|++.+ ..+..+||.++..+|..+.+.|++|..+++|||+.++-||||.
T Consensus 245 ~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 245 RIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 44444443 3489999999999999999999886 8999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC
Q 007090 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 538 ~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
+++.||+|+.|.++..++||+||+|+.-......+.+...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999755333445554444
No 53
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.5e-39 Score=372.07 Aligned_cols=297 Identities=24% Similarity=0.316 Sum_probs=242.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
|+ .|+++|+.++|.++.|++++++||||+|||. |.++++.++.. +++++|||+|||+|+.|+++.+++++.
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 55 8999999999999999999999999999996 56666555432 378899999999999999999999999
Q ss_pred hcCceEEEEECCCC-----hHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-----------
Q 007090 324 SHGIRVSAVYGGMS-----KLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD----------- 386 (618)
Q Consensus 324 ~~~~~~~~~~gg~~-----~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~----------- 386 (618)
..++.+..++|+.. ...+...+.. +++|+|+||++|.+.+. .+....+++|||||||+|++
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 88888887777654 2333444553 58999999999998875 44566799999999999986
Q ss_pred CCCh-HHHHHHHHhcCC------------------------CccEEEEeccccHH-HHHHHHHHcCCCeEEEEcCccccc
Q 007090 387 LGFE-PQIRSIVGQIRP------------------------DRQTLLFSATMPRK-VEKLAREILSDPVRVTVGEVGMAN 440 (618)
Q Consensus 387 ~~~~-~~i~~i~~~~~~------------------------~~q~i~~SAT~~~~-~~~l~~~~~~~~~~i~~~~~~~~~ 440 (618)
+||. ..+..++..++. .+|+++||||+++. +.. .++.++..+.++......
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccccc
Confidence 6775 677777777764 68999999999874 332 234556666777666666
Q ss_pred cceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhH---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 007090 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (618)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~---~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~ 517 (618)
.++.+.+.... .+...+..++... +.++||||++... ++.++++|...|+++..+||++ .+.++.|+
T Consensus 304 rnI~~~yi~~~---~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 304 RNIVDSYIVDE---DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred CCceEEEEEcc---cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 77888776554 5666777776544 3589999999777 9999999999999999999999 23469999
Q ss_pred cCCceEEEe----cccccccCCcCC-ccEEEEcCCCC------CHHHHHHHHhhcccC
Q 007090 518 SGVYHVLIA----TDVAARGLDIKS-IKSVVNFDIAR------DMDMHVHRIGRTGRA 564 (618)
Q Consensus 518 ~g~~~VLVa----T~~~~~Gldi~~-v~~VI~~~~p~------~~~~y~Qr~GR~gR~ 564 (618)
+|+++|||| |++++||||+|+ |++||||+.|. ....|.||+||+.+.
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 689999999999 89999999998 678899999999754
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.5e-39 Score=361.66 Aligned_cols=303 Identities=21% Similarity=0.274 Sum_probs=237.2
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH-hhcCceEE
Q 007090 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRVS 330 (618)
Q Consensus 252 Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~-~~~~~~~~ 330 (618)
-.+.+..+.+++++|++|+||||||++|.++++.+.. .+++++|++|||++|.|+++.+.+.. ...|..+.
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3456677788999999999999999999999887752 25689999999999999999886543 34466677
Q ss_pred EEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCChHHH-HHHHHhcCCCccEEE
Q 007090 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQI-RSIVGQIRPDRQTLL 408 (618)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah-~~~~~~~~~~i-~~i~~~~~~~~q~i~ 408 (618)
+.+++... ...+.+|+|+|++.|.+++.. ...++.+++|||||+| ++++.++.-.+ ..+...++++.|+|+
T Consensus 79 y~vr~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 79 YRVRGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEEccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 76666542 334589999999999999865 4579999999999999 57877765433 456666788999999
Q ss_pred EeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccH-----HHHHHhcCCCCCCCcEEEEcCChhHH
Q 007090 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----PWLLEKLPGMIDDGDVLVFASKKTTV 483 (618)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~-----~~l~~~l~~~~~~~~vLVF~~~~~~~ 483 (618)
||||++... +..|+.++..+.+... ...+.+.+..... ..++ ..+...+.. ..|.+|||++++.++
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRG-DQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEI 222 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecch-hhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHH
Confidence 999998653 4567766544544322 2234444443322 1222 123333322 358999999999999
Q ss_pred HHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCC----------
Q 007090 484 DEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD---------- 550 (618)
Q Consensus 484 ~~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~---------- 550 (618)
+.++..|.+ .++.+..+||++++.+|.++++.|++|..+|||||+++++||||++|++||+++.|..
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 4789999999999999999999999999999999999999999999999999998752
Q ss_pred --------HHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 551 --------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 551 --------~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
-..|.||.||+||.+ +|.||+|++..+.
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~~--~G~cyrL~t~~~~ 338 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRLE--PGVCYRLWSEEQH 338 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCCC--CCEEEEeCCHHHH
Confidence 345899999999996 8999999998654
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.9e-38 Score=366.18 Aligned_cols=307 Identities=21% Similarity=0.279 Sum_probs=227.0
Q ss_pred EEeCCCCcHHHHHHHHHHHHHhcCCcc-----ccCCCCeEEEEcccHHHHHHHHHHHHHHHh------------hcCceE
Q 007090 267 GIAKTGSGKTAAFVLPMIVHIMDQPEL-----QKEEGPIGVICAPTRELAHQIYLETKKFAK------------SHGIRV 329 (618)
Q Consensus 267 ~~~~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~------------~~~~~~ 329 (618)
+++|||||||++|.+|++..++..+.. ...++.++|||+|+++|+.|+.+.++..+. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999999865321 123468999999999999999998875221 236888
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-ccccCceeEEEecchhhhhcCCChHHH----HHHHHhcCCCc
Q 007090 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQI----RSIVGQIRPDR 404 (618)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~l~~~~~iIvDEah~~~~~~~~~~i----~~i~~~~~~~~ 404 (618)
...+|+.+..++.+.+.+.++|+|+||++|..++.++ ...++++.+|||||+|.|.+..++.++ ..+...+....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888877777778999999999999887653 346899999999999999876555444 34444456678
Q ss_pred cEEEEeccccHHHHHHHHHHcC-CCeEEEEcCccccccceeEEEEEcCCC-------------------cccHHHH-HHh
Q 007090 405 QTLLFSATMPRKVEKLAREILS-DPVRVTVGEVGMANEDITQVVHVIPSD-------------------AEKLPWL-LEK 463 (618)
Q Consensus 405 q~i~~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~i~q~~~~~~~~-------------------~~k~~~l-~~~ 463 (618)
|+|++|||+++ .+.+++.+.. .++.+.. ........+.. +...... ......+ ...
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 4566655443 3555532 22222222221 1111110 0000111 111
Q ss_pred cCCCCCCCcEEEEcCChhHHHHHHHHHHhCC---------------------------------CcEEEEeCCCCHHHHH
Q 007090 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKG---------------------------------FKAAALHGDKDQASRM 510 (618)
Q Consensus 464 l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~---------------------------------~~~~~l~g~~~~~~r~ 510 (618)
+.......++||||||+..|+.++..|++.. +.+.++||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2112235789999999999999999997531 1257899999999999
Q ss_pred HHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCc
Q 007090 511 EILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (618)
Q Consensus 511 ~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~ 578 (618)
.+.+.|++|+.+|||||+.+++||||+.|++||+|+.|.++.+|+||+||+||.. .|.+..++.+.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~--gg~s~gli~p~ 383 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV--GGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC--CCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999974 24443334433
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-38 Score=334.85 Aligned_cols=328 Identities=22% Similarity=0.373 Sum_probs=263.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.|+..++|-|.++|..+++++|+++..|||.||++||.+|++.. .| -+|||.|..+|....+..+...
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHHHHHHc-
Confidence 48999999999999999999999999999999999999999865 13 5899999999998888887776
Q ss_pred hhcCceEEEEECCCChHHHHHH---HHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC--ChHHHHHH
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEPQIRSI 396 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~--~~~~i~~i 396 (618)
|+.+.++.+..+..+.... +.. ..++++-+|++|..-.-...+.-..+.++||||||++.+|| |.+.+..+
T Consensus 81 ---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 81 ---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 8888888888776554332 333 37999999999975433333345678999999999999997 88888865
Q ss_pred HHhcC--CCccEEEEeccccHHHHHHHHHHcCCCe-EEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcE
Q 007090 397 VGQIR--PDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDV 473 (618)
Q Consensus 397 ~~~~~--~~~q~i~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~v 473 (618)
-.... ++..++.+|||.++.+...+...+.--. .+... +...+++.-.+........+..++...+. ...+..
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpNi~~~v~~~~~~~~q~~fi~~~~~--~~~~~G 233 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPNLALKVVEKGEPSDQLAFLATVLP--QLSKSG 233 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCchhhhhhhhcccHHHHHHHHHhhcc--ccCCCe
Confidence 43322 4788999999999998877776654321 12221 22223333222222223344444443222 235678
Q ss_pred EEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHH
Q 007090 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553 (618)
Q Consensus 474 LVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~ 553 (618)
||||.|+..++.++..|...|+.+..+|++|+..+|..+.+.|..+..+|+|||.+++.|||-|+|++||||++|.+++.
T Consensus 234 IIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~Es 313 (590)
T COG0514 234 IIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIES 313 (590)
T ss_pred EEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHH
Q 007090 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (618)
Q Consensus 554 y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l 590 (618)
|.|-+||+||.| .+..|+.||++.|......+++.-
T Consensus 314 YyQE~GRAGRDG-~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 314 YYQETGRAGRDG-LPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHhhccCCC-CcceEEEeeccccHHHHHHHHHhh
Confidence 999999999999 689999999999988877776653
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.2e-38 Score=359.05 Aligned_cols=303 Identities=21% Similarity=0.284 Sum_probs=235.0
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH-HhhcCceEE
Q 007090 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVS 330 (618)
Q Consensus 252 Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~-~~~~~~~~~ 330 (618)
-.+.+..+.++++++++|+||||||++|.++++.... .++++||++|||++|.|+++.+... ....|..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3456677778999999999999999999888876531 1347999999999999999988654 334567788
Q ss_pred EEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-hhcCCCh-HHHHHHHHhcCCCccEEE
Q 007090 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFE-PQIRSIVGQIRPDRQTLL 408 (618)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~-~~~~~~~-~~i~~i~~~~~~~~q~i~ 408 (618)
+.+++.+.. .....|+|+|||+|.+++.. ...++.+++|||||+|+ .++.++. ..+..++..++++.|+++
T Consensus 82 y~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 82 YRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 877776542 23468999999999998875 45789999999999996 5555432 234456677888999999
Q ss_pred EeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHH-----HHHHhcCCCCCCCcEEEEcCChhHH
Q 007090 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP-----WLLEKLPGMIDDGDVLVFASKKTTV 483 (618)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~-----~l~~~l~~~~~~~~vLVF~~~~~~~ 483 (618)
||||++.. ....|+.++..+.+... ...+.+.+..... ..++. .+...+.. ..|.+|||++++.++
T Consensus 155 mSATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei 225 (812)
T PRK11664 155 MSATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPA-HQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEI 225 (812)
T ss_pred EecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCch-hhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHH
Confidence 99999865 23566766554444322 2234555543332 22322 23333332 368999999999999
Q ss_pred HHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCC----------
Q 007090 484 DEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD---------- 550 (618)
Q Consensus 484 ~~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~---------- 550 (618)
..+++.|.. .++.+..+||++++.+|..++..|++|+.+|||||+++++||||++|++||+++.+..
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 999999987 5788999999999999999999999999999999999999999999999999887653
Q ss_pred --------HHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 551 --------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 551 --------~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
-..|.||.||+||.+ +|.||+|++..+.
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~~--~G~cyrL~t~~~~ 341 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRLE--PGICLHLYSKEQA 341 (812)
T ss_pred eeEEEeechhhhhhhccccCCCC--CcEEEEecCHHHH
Confidence 357999999999996 8999999997653
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.1e-38 Score=339.62 Aligned_cols=319 Identities=19% Similarity=0.226 Sum_probs=248.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+|+|..+++.+++|+ |..+.||+|||++|++|++.+.+ .|+.++||+||++||.|.++++..++..+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 479999999999999998 99999999999999999998864 37889999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc-------------------------ccccCceeEEEec
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-------------------------ALTMSRVTYLVLD 379 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~-------------------------~~~l~~~~~iIvD 379 (618)
|+++.+++||.+. +.+....++||+++|...| .++|.-+ ....+.+.++|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999764 3444556899999999887 3444221 1123568899999
Q ss_pred chhhhh-c--------------C---CChHHHHHHHHhcC----------------------------------------
Q 007090 380 EADRMF-D--------------L---GFEPQIRSIVGQIR---------------------------------------- 401 (618)
Q Consensus 380 Eah~~~-~--------------~---~~~~~i~~i~~~~~---------------------------------------- 401 (618)
|+|.++ + . .+...+..+...+.
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999752 0 0 00000111111000
Q ss_pred ----------------C-------------------------------------------------------------Cc
Q 007090 402 ----------------P-------------------------------------------------------------DR 404 (618)
Q Consensus 402 ----------------~-------------------------------------------------------------~~ 404 (618)
. -.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 0 03
Q ss_pred cEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHH
Q 007090 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTV 483 (618)
Q Consensus 405 q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~ 483 (618)
++.+||||.+....++...|..+++.+........ ...+.+. +.....|+..|...+.... ...++||||++...+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v-~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEV-FLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEE-EeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 67799999998888888888888777655443321 1223233 3345678888888886543 245899999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcC---Ccc-----EEEEcCCCCCHHHHH
Q 007090 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHV 555 (618)
Q Consensus 484 ~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~---~v~-----~VI~~~~p~~~~~y~ 555 (618)
+.++..|...|+++..|||.++ +|.+.+..|..+...|+|||++++||+||+ +|. +||+|+.|.+...|.
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 9999999999999999999865 555666667766778999999999999999 676 999999999999999
Q ss_pred HHHhhcccCCCCCeEEEEEecCccHHH
Q 007090 556 HRIGRTGRAGDKDGTAYTLVTQKEARF 582 (618)
Q Consensus 556 Qr~GR~gR~g~~~g~~~~l~~~~d~~~ 582 (618)
||+||+||.| .+|.+++|++..|.-+
T Consensus 565 hr~GRTGRqG-~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 565 QLAGRCGRQG-DPGSYEAILSLEDDLL 590 (656)
T ss_pred HhcccccCCC-CCeEEEEEechhHHHH
Confidence 9999999999 6799999999877433
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.1e-37 Score=366.39 Aligned_cols=330 Identities=21% Similarity=0.257 Sum_probs=253.9
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH
Q 007090 236 LMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (618)
Q Consensus 236 l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~ 314 (618)
+.+.+.+ .|+ .|+++|+++++.+++|++++++||||+|||++++++++.+. ..++++|||+||++|+.|+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHHH
Confidence 4445555 688 69999999999999999999999999999996665555442 1367899999999999999
Q ss_pred HHHHHHHHhhc--CceEEEEECCCChHHHH---HHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc--
Q 007090 315 YLETKKFAKSH--GIRVSAVYGGMSKLDQF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (618)
Q Consensus 315 ~~~~~~~~~~~--~~~~~~~~gg~~~~~~~---~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~-- 386 (618)
++.++.++... ++++..++|+.+..++. ..+..+ ++|+|+||++|.+.+... ....+++|||||||+|+.
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccc
Confidence 99999998765 45667788888876653 345554 899999999998876532 226799999999999986
Q ss_pred ---------CCChHHHHH----HHH----------------------hcCCCcc-EEEEeccccHHHHHHHHHHcCCCeE
Q 007090 387 ---------LGFEPQIRS----IVG----------------------QIRPDRQ-TLLFSATMPRKVEKLAREILSDPVR 430 (618)
Q Consensus 387 ---------~~~~~~i~~----i~~----------------------~~~~~~q-~i~~SAT~~~~~~~l~~~~~~~~~~ 430 (618)
++|.+.+.. ++. .++..+| ++++|||+++.- ....++.++..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeE
Confidence 478777764 332 2344555 677999998641 12234567777
Q ss_pred EEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhH---HHHHHHHHHhCCCcEEEEeCCCCHH
Q 007090 431 VTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQA 507 (618)
Q Consensus 431 i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~---~~~l~~~L~~~~~~~~~l~g~~~~~ 507 (618)
+.++.......++.+.+...... .+ ..+..++... ..++||||++... ++.+++.|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~~-~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEKI-IK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCHH-HH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 88777666667777777655322 23 4566666554 4589999999875 589999999999999999995
Q ss_pred HHHHHHHHHhcCCceEEEec----ccccccCCcCC-ccEEEEcCCCC---CHHHHHHHH-------------hhcccCCC
Q 007090 508 SRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR---DMDMHVHRI-------------GRTGRAGD 566 (618)
Q Consensus 508 ~r~~~~~~F~~g~~~VLVaT----~~~~~Gldi~~-v~~VI~~~~p~---~~~~y~Qr~-------------GR~gR~g~ 566 (618)
|..+++.|++|++.||||| ++++||||+|+ |++|||||+|. ++..|.|.. ||+||.|
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g- 444 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG- 444 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC-
Confidence 8899999999999999999 58999999999 99999999999 887776655 9999999
Q ss_pred CCeEEEEEecCccHHHHHHHHH
Q 007090 567 KDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 567 ~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
.++.++..+...+..++.+++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHHhc
Confidence 4667775555555555554443
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.2e-37 Score=335.59 Aligned_cols=301 Identities=16% Similarity=0.170 Sum_probs=221.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
...|+++|.++++.++.++++++++|||+|||+++.+.+ ...... ...++|||+||++|+.||.+.+.+++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 357999999999999999999999999999998754432 222222 2347999999999999999999998754
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
....+..+.+|.... .+.+|+|+||++|.+... ..+..+++|||||||++.. ..+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhccc
Confidence 344555666665442 357999999999976432 2467899999999999874 34567777777788
Q ss_pred cEEEEeccccHHHHHH--HHHHcCCCeEEEEcCccc------cccceeEEE--------------------EEcCCCccc
Q 007090 405 QTLLFSATMPRKVEKL--AREILSDPVRVTVGEVGM------ANEDITQVV--------------------HVIPSDAEK 456 (618)
Q Consensus 405 q~i~~SAT~~~~~~~l--~~~~~~~~~~i~~~~~~~------~~~~i~q~~--------------------~~~~~~~~k 456 (618)
++++||||++...... ...+++ |+...+..... ....+.... ..+.....+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 9999999997542211 112233 22222111000 000000000 011112223
Q ss_pred HHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec-ccccccC
Q 007090 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGL 534 (618)
Q Consensus 457 ~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT-~~~~~Gl 534 (618)
...+...+.... .+.++||||.+..+++.+++.|...++++..+||++++.+|..+++.|++|...||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 333333332222 34689999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred CcCCccEEEEcCCCCCHHHHHHHHhhcccCCCC
Q 007090 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK 567 (618)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~ 567 (618)
|+|++++||++.++.+...|+||+||++|.+..
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 999999999999999999999999999999843
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.6e-37 Score=321.39 Aligned_cols=302 Identities=21% Similarity=0.239 Sum_probs=212.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH----
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---- 339 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~---- 339 (618)
++++++|||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+++. .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 58999999999999999999977543 23678999999999999999999997542 334444432210
Q ss_pred -------HH-HHHH------HcCCcEEEeChHHHHHHHHccc----ccc--CceeEEEecchhhhhcCCChHHHHHHHHh
Q 007090 340 -------DQ-FKEL------KAGCEIVIATPGRLIDMLKMKA----LTM--SRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (618)
Q Consensus 340 -------~~-~~~l------~~~~dIiv~Tp~~L~~~l~~~~----~~l--~~~~~iIvDEah~~~~~~~~~~i~~i~~~ 399 (618)
.. .... ...++|+|+||+.+...+.... ..+ -..++|||||||.+..+++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 00 0011 1136899999999988765411 111 123789999999988765443 5555555
Q ss_pred cC-CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEc-CCCcccHHHHHHhcCCCCCCCcEEEEc
Q 007090 400 IR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVI-PSDAEKLPWLLEKLPGMIDDGDVLVFA 477 (618)
Q Consensus 400 ~~-~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~-~~~~~k~~~l~~~l~~~~~~~~vLVF~ 477 (618)
+. ...|+++||||+|..+..++..+...+....+..... .....+.+... .....+...+..++.....++++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 54 5789999999999877777666543321111111000 00112222221 122234444444443333467999999
Q ss_pred CChhHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHH----HHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCH
Q 007090 478 SKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEI----LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (618)
Q Consensus 478 ~~~~~~~~l~~~L~~~~~--~~~~l~g~~~~~~r~~~----~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (618)
+++..++.+++.|++.+. .+..+||++++.+|.++ ++.|++|+..|||||+++++|+||+ +..||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988765 59999999999999764 8899999999999999999999995 8899998766 8
Q ss_pred HHHHHHHhhcccCCCCCe---EEEEEecCcc
Q 007090 552 DMHVHRIGRTGRAGDKDG---TAYTLVTQKE 579 (618)
Q Consensus 552 ~~y~Qr~GR~gR~g~~~g---~~~~l~~~~d 579 (618)
..|+||+||+||.|.+.| .+|.+....+
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 899999999999984444 7777766543
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-36 Score=303.51 Aligned_cols=323 Identities=25% Similarity=0.282 Sum_probs=240.0
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
..+++.+|.......+.+ ++|++.|||.|||+++++-+..++.+.+ + ++|+++||+-|+.|.+..+.++...
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 357889999888777765 8999999999999998888888876642 4 8999999999999999999999865
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
....++.+.|.....+ ...+.....|+|+||+.+.+-+..+.+++.++.+|||||||+-...--.-.+...+-....+.
T Consensus 85 p~~~i~~ltGev~p~~-R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEE-REELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHH-HHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 5556667777665543 445566789999999999999999999999999999999998664433334444444445677
Q ss_pred cEEEEeccccHHHHHH---HHHHcCCCeEEEE------------------------------------------------
Q 007090 405 QTLLFSATMPRKVEKL---AREILSDPVRVTV------------------------------------------------ 433 (618)
Q Consensus 405 q~i~~SAT~~~~~~~l---~~~~~~~~~~i~~------------------------------------------------ 433 (618)
.++++||||....+.+ +..+.-..+.+..
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999994322111 1111000000000
Q ss_pred ---cCc--c------c--------cc---------------------------cceeEEE--------------------
Q 007090 434 ---GEV--G------M--------AN---------------------------EDITQVV-------------------- 447 (618)
Q Consensus 434 ---~~~--~------~--------~~---------------------------~~i~q~~-------------------- 447 (618)
... . . .. +.+...+
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 000 0 0 00 0000000
Q ss_pred -----------------EEcCCCcccHHHHHHhcCCCC---CCCcEEEEcCChhHHHHHHHHHHhCCCcEE-EEe-----
Q 007090 448 -----------------HVIPSDAEKLPWLLEKLPGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALH----- 501 (618)
Q Consensus 448 -----------------~~~~~~~~k~~~l~~~l~~~~---~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~-~l~----- 501 (618)
....-.+.|+..+.+++...+ ...++|||++.+..++.+.++|.+.+..+. .+-
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 001113445555555555443 235899999999999999999999987764 333
Q ss_pred ---CCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCc
Q 007090 502 ---GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (618)
Q Consensus 502 ---g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~ 578 (618)
.||+|.++.++++.|+.|.++|||||+++++|||||.++.||+|++..|+..++||.||+||.- .|.+|.|++..
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r--~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKR--KGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCC--CCeEEEEEecC
Confidence 3799999999999999999999999999999999999999999999999999999999999974 79999999987
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.3e-36 Score=333.55 Aligned_cols=319 Identities=18% Similarity=0.240 Sum_probs=240.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+++|..+++.+++|+ |+.+.||+|||+++++|++.+.+. |+.++|++||+.||.|.++++..++..+|
T Consensus 78 ~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~~lG 147 (790)
T PRK09200 78 RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYEFLG 147 (790)
T ss_pred CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 79999999999888886 999999999999999999866653 77899999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhhc-------------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD------------- 386 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~~~~iIvDEah~~~~------------- 386 (618)
+++.++.|+.+...+.+. ..+++|+++||++| .+++... ...++.+.++||||||+|+-
T Consensus 148 l~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 148 LTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred CeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 999999999884444343 34699999999999 4544322 23567899999999998731
Q ss_pred ---CCChHHHHHHHHhcCCC------------------------------------------------------------
Q 007090 387 ---LGFEPQIRSIVGQIRPD------------------------------------------------------------ 403 (618)
Q Consensus 387 ---~~~~~~i~~i~~~~~~~------------------------------------------------------------ 403 (618)
..+...+..+...+...
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 00111111111111100
Q ss_pred ---------------------------------------------------------ccEEEEeccccHHHHHHHHHHcC
Q 007090 404 ---------------------------------------------------------RQTLLFSATMPRKVEKLAREILS 426 (618)
Q Consensus 404 ---------------------------------------------------------~q~i~~SAT~~~~~~~l~~~~~~ 426 (618)
.++.+||+|....-.++...| +
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y-~ 385 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY-N 385 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh-C
Confidence 246677777655544554443 3
Q ss_pred CCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCC-CCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 427 ~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
-.+...+...+... .......+.....|...+...+... ....++||||++...++.++..|.+.|+++..+||.+.
T Consensus 386 l~v~~IPt~kp~~r--~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 MEVVQIPTNRPIIR--IDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred CcEEECCCCCCccc--ccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 22222211111111 1111122234457888888887653 23568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecccccccCCc---CCcc-----EEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC
Q 007090 506 QASRMEILQKFKSGVYHVLIATDVAARGLDI---KSIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 506 ~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi---~~v~-----~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
+.++..+...+..| .|+|||++++||+|| ++|. +||+|+.|.+...|.||+||+||.| .+|.+++|++.
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G-~~G~s~~~is~ 540 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG-DPGSSQFFISL 540 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC-CCeeEEEEEcc
Confidence 88888777777766 799999999999999 6998 9999999999999999999999999 67999999998
Q ss_pred ccHHH
Q 007090 578 KEARF 582 (618)
Q Consensus 578 ~d~~~ 582 (618)
.|.-+
T Consensus 541 eD~l~ 545 (790)
T PRK09200 541 EDDLL 545 (790)
T ss_pred hHHHH
Confidence 77543
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.8e-36 Score=327.16 Aligned_cols=321 Identities=19% Similarity=0.176 Sum_probs=233.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.++|+|.|++..+..+++.|+.++||+|||++|++|++.+.+. ++.++|++|++.||.|+++++..++..+|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 3566666666666656668999999999999999998777653 55699999999999999999999999999
Q ss_pred ceEEEEECCCC---hHHHHHHHHcCCcEEEeChHHH-HHHHHc------cccccCceeEEEecchhhhhcCC--------
Q 007090 327 IRVSAVYGGMS---KLDQFKELKAGCEIVIATPGRL-IDMLKM------KALTMSRVTYLVLDEADRMFDLG-------- 388 (618)
Q Consensus 327 ~~~~~~~gg~~---~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~------~~~~l~~~~~iIvDEah~~~~~~-------- 388 (618)
+.+.+.+++.. .....+....+++|+++||++| .+++.. ....++.+.++||||||.|+-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99998887622 1222233445799999999999 455532 23457789999999999873100
Q ss_pred --------ChHHHHHHHHhcCC----------------------------------------------------------
Q 007090 389 --------FEPQIRSIVGQIRP---------------------------------------------------------- 402 (618)
Q Consensus 389 --------~~~~i~~i~~~~~~---------------------------------------------------------- 402 (618)
....+..+...+.+
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 01111111111111
Q ss_pred -----------------------------------------------------------CccEEEEeccccHHHHHHHHH
Q 007090 403 -----------------------------------------------------------DRQTLLFSATMPRKVEKLARE 423 (618)
Q Consensus 403 -----------------------------------------------------------~~q~i~~SAT~~~~~~~l~~~ 423 (618)
-.++.+||+|......++...
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 035667777766555555543
Q ss_pred HcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCC-CCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q 007090 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (618)
Q Consensus 424 ~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~-~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g 502 (618)
| +-.+...+...... .....-..+.....|+..++..+... ....++||||++...++.++..|.+.|+++..+||
T Consensus 380 Y-~l~v~~IPt~kp~~--r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 380 Y-SLSVVKIPTNKPII--RIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred h-CCCEEEcCCCCCee--eeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 3 32332222111111 11111122334567888888877654 23568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecccccccCCcC---------CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEE
Q 007090 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (618)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~---------~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~ 573 (618)
.+.+.++..+...++.| .|+|||++++||+||+ ++.+|++|++|....+ .||+||+||.| ++|.++.
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG-~~G~s~~ 532 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG-DPGSSQF 532 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC-CceeEEE
Confidence 99998887777766666 7999999999999999 9999999999998766 99999999999 6899999
Q ss_pred EecCccHHH
Q 007090 574 LVTQKEARF 582 (618)
Q Consensus 574 l~~~~d~~~ 582 (618)
|++..|.-+
T Consensus 533 ~is~eD~l~ 541 (762)
T TIGR03714 533 FVSLEDDLI 541 (762)
T ss_pred EEccchhhh
Confidence 999877543
No 65
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=303.43 Aligned_cols=276 Identities=34% Similarity=0.496 Sum_probs=224.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHHhh---cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeE
Q 007090 299 PIGVICAPTRELAHQIYLETKKFAKS---HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (618)
Q Consensus 299 ~~vLIl~Ptr~La~q~~~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~ 375 (618)
|..+|+-|.|+||.|.++.+.+|-.. ..++...++||.....|...+..|.+|+|+||++|...+......++.+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 89999999999999999977776543 356777889999999999999999999999999999999988889999999
Q ss_pred EEecchhhhhcCCChHHHHHHHHhcCC------CccEEEEeccccH-HHHHHHHHHcCCCeEEEEcCccccccceeEEEE
Q 007090 376 LVLDEADRMFDLGFEPQIRSIVGQIRP------DRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVH 448 (618)
Q Consensus 376 iIvDEah~~~~~~~~~~i~~i~~~~~~------~~q~i~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~ 448 (618)
+|+|||+.++..++...|..+...++. ..|.++.|||+.. ++..+..+.|+-|.-+...........+.+.+.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999988988888888888763 4689999999853 344556667777777766555444444433333
Q ss_pred EcC-CCcccHHHH----------------------------HHhc---------CCCCCCCcEEEEcCChhHHHHHHHHH
Q 007090 449 VIP-SDAEKLPWL----------------------------LEKL---------PGMIDDGDVLVFASKKTTVDEIESQL 490 (618)
Q Consensus 449 ~~~-~~~~k~~~l----------------------------~~~l---------~~~~~~~~vLVF~~~~~~~~~l~~~L 490 (618)
.+. +....+..+ +.++ .+. .-.+.||||.++.+|+.|.++|
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHH
Confidence 221 111111111 1111 111 1257999999999999999999
Q ss_pred HhC---CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCC
Q 007090 491 AQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK 567 (618)
Q Consensus 491 ~~~---~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~ 567 (618)
.+. .++++++||+..+.+|...++.|+.+..++||||++++||+||.++-+|||..+|..-..|+|||||+||+. +
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae-r 604 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE-R 604 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh-h
Confidence 887 378999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred CeEEEEEec
Q 007090 568 DGTAYTLVT 576 (618)
Q Consensus 568 ~g~~~~l~~ 576 (618)
-|.+++++.
T Consensus 605 mglaislva 613 (725)
T KOG0349|consen 605 MGLAISLVA 613 (725)
T ss_pred cceeEEEee
Confidence 688888875
No 66
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.7e-35 Score=344.20 Aligned_cols=291 Identities=25% Similarity=0.326 Sum_probs=226.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHH
Q 007090 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (618)
Q Consensus 236 l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~ 315 (618)
+.+.+.+.....|+++|+.+++.++.|++++++||||+|||+ |.+|++.++.. .++++|||+|||+||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 444455545568999999999999999999999999999997 66777666533 2788999999999999999
Q ss_pred HHHHHHHhhcCceEE---EEECCCChHHH---HHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc--
Q 007090 316 LETKKFAKSHGIRVS---AVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (618)
Q Consensus 316 ~~~~~~~~~~~~~~~---~~~gg~~~~~~---~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~-- 386 (618)
+.+.+++...++.+. +++||.+..++ ...+.. +++|+|+||++|.+.+.. +.. .++++||||||+|++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhcc
Confidence 999999987776544 45687776554 333444 499999999999987753 112 899999999999997
Q ss_pred ---------CCChHH-HHHHH----------------------HhcCCCcc--EEEEecc-ccHHHHHHHHHHcCCCeEE
Q 007090 387 ---------LGFEPQ-IRSIV----------------------GQIRPDRQ--TLLFSAT-MPRKVEKLAREILSDPVRV 431 (618)
Q Consensus 387 ---------~~~~~~-i~~i~----------------------~~~~~~~q--~i~~SAT-~~~~~~~l~~~~~~~~~~i 431 (618)
+||... +..++ +.++..+| +++|||| +|..+. ..++.++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccce
Confidence 678764 44433 23445555 5678999 555433 2345666667
Q ss_pred EEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCCh---hHHHHHHHHHHhCCCcEEEEeCCCCHHH
Q 007090 432 TVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKK---TTVDEIESQLAQKGFKAAALHGDKDQAS 508 (618)
Q Consensus 432 ~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~---~~~~~l~~~L~~~~~~~~~l~g~~~~~~ 508 (618)
.++.......++.+.+..... +...+..++... ..++||||++. ..++.++..|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc---HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 777666666677777654432 244555665543 46899999999 99999999999999999999999973
Q ss_pred HHHHHHHHhcCCceEEEe----cccccccCCcCC-ccEEEEcCCCC
Q 007090 509 RMEILQKFKSGVYHVLIA----TDVAARGLDIKS-IKSVVNFDIAR 549 (618)
Q Consensus 509 r~~~~~~F~~g~~~VLVa----T~~~~~Gldi~~-v~~VI~~~~p~ 549 (618)
.+++.|++|+++|||| |++++||||||+ |++|||||+|.
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 489999999999 89999999997
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.4e-35 Score=321.95 Aligned_cols=319 Identities=19% Similarity=0.220 Sum_probs=242.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+++|..+.+.++.|+ |..++||+|||+++++|++...+. |..|+|++||+.||.|.++++.+++..+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 368889988888887775 999999999999999999655442 4469999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhhc-C--------C-
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-L--------G- 388 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~~~~iIvDEah~~~~-~--------~- 388 (618)
|+++.+++|+.+...+... -.++|+++||++| .+++..+ ...++.+.++||||+|+|+- . +
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 9999999999886554333 3589999999999 8888654 34678899999999998732 0 0
Q ss_pred ------ChHHHHHHHHhcCC------------------------------------------------------------
Q 007090 389 ------FEPQIRSIVGQIRP------------------------------------------------------------ 402 (618)
Q Consensus 389 ------~~~~i~~i~~~~~~------------------------------------------------------------ 402 (618)
.......+...+..
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 00000011111100
Q ss_pred ---------------------------------------------------------CccEEEEeccccHHHHHHHHHHc
Q 007090 403 ---------------------------------------------------------DRQTLLFSATMPRKVEKLAREIL 425 (618)
Q Consensus 403 ---------------------------------------------------------~~q~i~~SAT~~~~~~~l~~~~~ 425 (618)
-.++.+||+|......++...|.
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 02566777777655555544443
Q ss_pred CCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCC
Q 007090 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (618)
Q Consensus 426 ~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~ 504 (618)
- ++...+...... ........+.....|+..++..+.... .+.++||||++...++.+++.|.+.|+++..+|+.
T Consensus 363 l-~vv~IPtnkp~~--R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~- 438 (745)
T TIGR00963 363 L-EVVVVPTNRPVI--RKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK- 438 (745)
T ss_pred C-CEEEeCCCCCee--eeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-
Confidence 3 332222111111 111112233345568888877764433 34599999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCceEEEecccccccCCcCC-------ccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC
Q 007090 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKS-------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 505 ~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~-------v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
+.+|...+..|..+...|+|||++++||+||+. .-+||+++.|.|...|.|++||+||.| .+|.+..|++.
T Consensus 439 -q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG-~~G~s~~~ls~ 516 (745)
T TIGR00963 439 -NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG-DPGSSRFFLSL 516 (745)
T ss_pred -hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC-CCcceEEEEec
Confidence 889999999999999999999999999999998 459999999999999999999999999 68999999999
Q ss_pred ccHHH
Q 007090 578 KEARF 582 (618)
Q Consensus 578 ~d~~~ 582 (618)
.|.-+
T Consensus 517 eD~l~ 521 (745)
T TIGR00963 517 EDNLM 521 (745)
T ss_pred cHHHH
Confidence 87544
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=306.70 Aligned_cols=337 Identities=20% Similarity=0.289 Sum_probs=274.7
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
...++.+++++.+.++..|+..+.|+|.-++.. ++.|+|.++..+|+||||++.-++-+..++.. |.+.|++
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEE
Confidence 455678999999999999999999999999976 67999999999999999999888888777653 7889999
Q ss_pred cccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH----HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecc
Q 007090 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF----KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDE 380 (618)
+|..+||+|-++.|+.-...+|+++..-+|-.-....- -.....+||||+||+++-.+++.. ..+.++..|||||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999999998888999987777743222110 011234899999999998888666 5689999999999
Q ss_pred hhhhhcCCChHHHHHHHHhc---CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccH
Q 007090 381 ADRMFDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (618)
Q Consensus 381 ah~~~~~~~~~~i~~i~~~~---~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 457 (618)
+|.+-+...++.+..++.++ -+..|+|.+|||..+. +.+++.+...++...-.. ..+..+.........|+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RP-----VplErHlvf~~~e~eK~ 420 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERP-----VPLERHLVFARNESEKW 420 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCC-----CChhHeeeeecCchHHH
Confidence 99888766666777666554 4789999999999755 668888766655543222 22334444455566777
Q ss_pred HHHHHhcCC-------CCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 458 PWLLEKLPG-------MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 458 ~~l~~~l~~-------~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
..+..+.+. ....|++|||++|+..|..|+.+|...|+++.++|++++..+|..+...|.++...++|+|.++
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 776655432 2246899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCCccEEEE-----cCCCCCHHHHHHHHhhcccCC-CCCeEEEEEecC
Q 007090 531 ARGLDIKSIKSVVN-----FDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQ 577 (618)
Q Consensus 531 ~~Gldi~~v~~VI~-----~~~p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~ 577 (618)
+.|+|+|. +.||+ -.-+-++..|.|+.||+||.+ +..|++|.++-+
T Consensus 501 ~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 501 AAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 99999996 55553 334669999999999999999 667999999876
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.5e-34 Score=332.88 Aligned_cols=324 Identities=25% Similarity=0.318 Sum_probs=243.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
..+++++|.+++..++.+ ++|+++|||+|||+++++++..++.. .+.++|||+||++|+.||...+.+++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 357899999999888887 99999999999999998888877631 3578999999999999999999998754
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
.+..+..+.|+.+.. ....+..+++|+|+||+.+...+......+..+++|||||||++........+...+....+..
T Consensus 85 ~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 445777777776554 4455667789999999999888777777888999999999999875544444544444445667
Q ss_pred cEEEEeccccHH---HHHHHHHHcCCCeEEE--------------------EcCc------------------------c
Q 007090 405 QTLLFSATMPRK---VEKLAREILSDPVRVT--------------------VGEV------------------------G 437 (618)
Q Consensus 405 q~i~~SAT~~~~---~~~l~~~~~~~~~~i~--------------------~~~~------------------------~ 437 (618)
++++||||+... +..++..+....+.+. +.-. +
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999998422 2222222111100000 0000 0
Q ss_pred cc---c------------cceeEE--------------------------------------------------------
Q 007090 438 MA---N------------EDITQV-------------------------------------------------------- 446 (618)
Q Consensus 438 ~~---~------------~~i~q~-------------------------------------------------------- 446 (618)
.. . ..+.+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 0 000000
Q ss_pred ---------------EEEcCCCcccHHHHHHhcCCC---CCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC-----
Q 007090 447 ---------------VHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGD----- 503 (618)
Q Consensus 447 ---------------~~~~~~~~~k~~~l~~~l~~~---~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~----- 503 (618)
...+.....|+..|.+.|... ...+++||||++...+..|+++|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 000011234555555555432 245799999999999999999999999999999986
Q ss_pred ---CCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCcc
Q 007090 504 ---KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (618)
Q Consensus 504 ---~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d 579 (618)
+++.+|.+++..|++|..+|||||+++++|+|+|.+++||+|++|+++..|+||+||+||.| +|.+|.|++...
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~--~~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE--EGRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC--CCEEEEEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999998 589999998653
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6.4e-35 Score=324.84 Aligned_cols=336 Identities=24% Similarity=0.322 Sum_probs=254.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH
Q 007090 231 GFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (618)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 309 (618)
.++..+...+...++..+.+.|+.++.. ++.++|+|+|+|||||||+++++.+++.+.+. +.++++|||+|+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 3677778888888887888777777755 55679999999999999999999999998653 567999999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCC
Q 007090 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (618)
Q Consensus 310 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~ 389 (618)
||.+++++++++ ..+|+++...+|+...... --.+++|||+||+++-..+++....+..+++|||||+|.+.+...
T Consensus 88 La~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCccc
Confidence 999999999944 4579999999998775442 224699999999999999887777788999999999999888766
Q ss_pred hHHHHHHHHhcC---CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcccc-ccceeEEEEEcCCCc-----ccHHHH
Q 007090 390 EPQIRSIVGQIR---PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVIPSDA-----EKLPWL 460 (618)
Q Consensus 390 ~~~i~~i~~~~~---~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~-~~~i~q~~~~~~~~~-----~k~~~l 460 (618)
++.+..++...+ +..|++++|||+|+ ...++.+.-.+++.......... .....+.+....... .+...+
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 666666666554 44799999999985 46788877666553222222211 111122222222111 111222
Q ss_pred HHh-cCCCCCCCcEEEEcCChhHHHHHHHHHHhC-------------------------------------CCcEEEEeC
Q 007090 461 LEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHG 502 (618)
Q Consensus 461 ~~~-l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~l~g 502 (618)
... +......+++||||+++..+...++.|+.. ...++.+|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 222 222234679999999999999999998830 124788999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEE----EcC-----CCCCHHHHHHHHhhcccCC-CCCeEEE
Q 007090 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFD-----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (618)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI----~~~-----~p~~~~~y~Qr~GR~gR~g-~~~g~~~ 572 (618)
+++.++|..+...|+.|+++||+||+.++.|+|+|.-+.|| .|+ .+-++.+|.|++||+||.| ...|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999755444 466 4557899999999999999 5567788
Q ss_pred EEecCc
Q 007090 573 TLVTQK 578 (618)
Q Consensus 573 ~l~~~~ 578 (618)
++.+..
T Consensus 403 i~~~~~ 408 (766)
T COG1204 403 ILATSH 408 (766)
T ss_pred EEecCc
Confidence 877443
No 71
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3e-34 Score=328.27 Aligned_cols=302 Identities=21% Similarity=0.306 Sum_probs=214.7
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccH----HHHHHHHHHHHHHHhhcC
Q 007090 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR----ELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 251 ~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr----~La~q~~~~~~~~~~~~~ 326 (618)
+-.+.+..+..++.++++|+||||||++ +|.+.+.... +....+++..|+| +||.++++++..- .|
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG 147 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETE---LG 147 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhh---hc
Confidence 3445667777888899999999999985 8866554322 1122455667865 5555555555432 23
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCChHH-HHHHHHhcCCCc
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDR 404 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah-~~~~~~~~~~-i~~i~~~~~~~~ 404 (618)
-.+++.+..... ...++.|+|||||+|++.+..+. .++.+++||||||| ++++.+|... +..++. .+++.
T Consensus 148 ~~VGY~vrf~~~------~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdl 219 (1294)
T PRK11131 148 GCVGYKVRFNDQ------VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDL 219 (1294)
T ss_pred ceeceeecCccc------cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-cCCCc
Confidence 334333332221 23468999999999999987654 49999999999999 6888887754 333332 34678
Q ss_pred cEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCc-----ccHHHHHHhcCC--CCCCCcEEEEc
Q 007090 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA-----EKLPWLLEKLPG--MIDDGDVLVFA 477 (618)
Q Consensus 405 q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~-----~k~~~l~~~l~~--~~~~~~vLVF~ 477 (618)
|+|+||||++. +.+.+.|...|+ +.+... ...+.+.+....... .....++..+.. ....|.+|||+
T Consensus 220 KvILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFL 293 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFM 293 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 99999999975 456666655564 444322 123444444332211 122233322211 12467899999
Q ss_pred CChhHHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcC--------
Q 007090 478 SKKTTVDEIESQLAQKGFK---AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD-------- 546 (618)
Q Consensus 478 ~~~~~~~~l~~~L~~~~~~---~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~-------- 546 (618)
++..+++.+++.|...++. +..+||++++.+|.++++. .|..+|||||+++++|||||+|++||+++
T Consensus 294 pg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd 371 (1294)
T PRK11131 294 SGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1294)
T ss_pred CCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccc
Confidence 9999999999999987664 7789999999999999886 57899999999999999999999999986
Q ss_pred -------CC---CCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 547 -------IA---RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 547 -------~p---~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
+| -|...|.||+||+||.+ +|.||+|++..+.
T Consensus 372 ~~~~~~~Lp~~~iSkasa~QRaGRAGR~~--~G~c~rLyte~d~ 413 (1294)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRVS--EGICIRLYSEDDF 413 (1294)
T ss_pred cccCcccCCeeecCHhhHhhhccccCCCC--CcEEEEeCCHHHH
Confidence 23 34579999999999996 7999999998764
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=301.76 Aligned_cols=323 Identities=26% Similarity=0.312 Sum_probs=232.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
...++.+|.+.+...+ |+++|+++|||+|||.++...|++|+-+.+ ..++++++||+-|..|....+..++.+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc
Confidence 3579999999998888 999999999999999999999999987665 478999999999999988777776553
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccc-cCceeEEEecchhhhhcCCChHHHH-HHHHhcCC
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-MSRVTYLVLDEADRMFDLGFEPQIR-SIVGQIRP 402 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~-l~~~~~iIvDEah~~~~~~~~~~i~-~i~~~~~~ 402 (618)
..+....||.........+....+|+|+||+.|.+.|...... |+.|.++||||||+-....-...|. ..+..-..
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 5666777775555555567778999999999999988764333 6899999999999866554444444 55544444
Q ss_pred CccEEEEeccccHHHHHHH---HHHcCC----------------------C-----------------------------
Q 007090 403 DRQTLLFSATMPRKVEKLA---REILSD----------------------P----------------------------- 428 (618)
Q Consensus 403 ~~q~i~~SAT~~~~~~~l~---~~~~~~----------------------~----------------------------- 428 (618)
..|+|++|||+....+... ..++.+ |
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 4499999999964332221 111110 0
Q ss_pred -eEEEEcC------------cccc----c--------------------ccee--EEEEEc-------------------
Q 007090 429 -VRVTVGE------------VGMA----N--------------------EDIT--QVVHVI------------------- 450 (618)
Q Consensus 429 -~~i~~~~------------~~~~----~--------------------~~i~--q~~~~~------------------- 450 (618)
..+.-.. .... + ..++ ..+.+.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 0000000 0000 0 0000 000000
Q ss_pred --------------------CCCcccHHHHHHhcCCC---CCCCcEEEEcCChhHHHHHHHHHHhC---CCcEEEEeC--
Q 007090 451 --------------------PSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHG-- 502 (618)
Q Consensus 451 --------------------~~~~~k~~~l~~~l~~~---~~~~~vLVF~~~~~~~~~l~~~L~~~---~~~~~~l~g-- 502 (618)
+....|+..+.+.+... ....++||||.++..+..|.++|.+. +++...+-|
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 00122333333333322 12357999999999999999999832 334333333
Q ss_pred ------CCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEec
Q 007090 503 ------DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (618)
Q Consensus 503 ------~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~ 576 (618)
+|++.++.++++.|++|.++|||||+++++||||+.|+.||.||...|+..++||.|| ||+- .|.|+.+++
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~--ns~~vll~t 527 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR--NSKCVLLTT 527 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc--CCeEEEEEc
Confidence 7999999999999999999999999999999999999999999999999999999999 9986 799999999
Q ss_pred Ccc
Q 007090 577 QKE 579 (618)
Q Consensus 577 ~~d 579 (618)
...
T Consensus 528 ~~~ 530 (746)
T KOG0354|consen 528 GSE 530 (746)
T ss_pred chh
Confidence 543
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=9.7e-33 Score=287.58 Aligned_cols=290 Identities=17% Similarity=0.191 Sum_probs=204.0
Q ss_pred HHHHHHHHHhcCCc--EEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc---
Q 007090 251 IQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--- 325 (618)
Q Consensus 251 ~Q~~~i~~i~~~~d--vl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~--- 325 (618)
+|.++++.+..+.+ +++++|||||||.+|++|++.. +.++++++|+++|+.|+++.+..++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999998742 3457999999999999999999987533
Q ss_pred -CceEEEEECCCChHH-HH-----------------H-HH-HcCCcEEEeChHHHHHHHHcc----c----cccCceeEE
Q 007090 326 -GIRVSAVYGGMSKLD-QF-----------------K-EL-KAGCEIVIATPGRLIDMLKMK----A----LTMSRVTYL 376 (618)
Q Consensus 326 -~~~~~~~~gg~~~~~-~~-----------------~-~l-~~~~dIiv~Tp~~L~~~l~~~----~----~~l~~~~~i 376 (618)
+..+..+.|...... .. + .+ ...++|+++||+.|..++... . ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 455555555321110 00 0 01 235789999999997765431 1 125789999
Q ss_pred EecchhhhhcCCC-----hHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHH--cCCCeEEEEcCc-----------cc
Q 007090 377 VLDEADRMFDLGF-----EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI--LSDPVRVTVGEV-----------GM 438 (618)
Q Consensus 377 IvDEah~~~~~~~-----~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~--~~~~~~i~~~~~-----------~~ 438 (618)
||||+|.+..+.. ......++.......+++++|||+++.+...+... ++.++....+.. ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999998764331 12333444433345799999999999877777765 555554433330 00
Q ss_pred -------cccceeEEEEEcCCCcccHHHH---HHhcCCC---CCCCcEEEEcCChhHHHHHHHHHHhCC--CcEEEEeCC
Q 007090 439 -------ANEDITQVVHVIPSDAEKLPWL---LEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKG--FKAAALHGD 503 (618)
Q Consensus 439 -------~~~~i~q~~~~~~~~~~k~~~l---~~~l~~~---~~~~~vLVF~~~~~~~~~l~~~L~~~~--~~~~~l~g~ 503 (618)
..+.+.+.+.. ....+...+ ...+.+. ...+++||||+++..++.++..|+..+ +.+..+||.
T Consensus 230 ~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred cccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 00133443333 222333332 2322211 235689999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcc
Q 007090 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562 (618)
Q Consensus 504 ~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~g 562 (618)
+++.+|.++ ++..|||||++++||+||+.+ +|| ++ |.++..|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999988765 478899999999999999987 666 55 889999999999997
No 74
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=285.40 Aligned_cols=349 Identities=20% Similarity=0.250 Sum_probs=263.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEeCCC-CcH--HHHHHHHHHHHHhcCCccccCC-----------------------
Q 007090 244 GYEKPTSIQCQALPIILSGRDIIGIAKTG-SGK--TAAFVLPMIVHIMDQPELQKEE----------------------- 297 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dvl~~~~TG-sGK--T~~~~l~~l~~~~~~~~~~~~~----------------------- 297 (618)
.-..+|+.|.+.+..+.+++|+++...|- .|+ +..|++++|+|+++.+.+..++
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 33568999999999999999999754443 344 5579999999999765433222
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCc---------eEEEEECC--------CChHHHHHHHHc-------------
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGI---------RVSAVYGG--------MSKLDQFKELKA------------- 347 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~---------~~~~~~gg--------~~~~~~~~~l~~------------- 347 (618)
.|+||||||+|+.|..+++.+..++....- +...-++| .+++..+..++.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 399999999999999999998888432111 11111222 122333333332
Q ss_pred ------------CCcEEEeChHHHHHHHHc------cccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCC------
Q 007090 348 ------------GCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD------ 403 (618)
Q Consensus 348 ------------~~dIiv~Tp~~L~~~l~~------~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~------ 403 (618)
.+||+||+|.+|.+++.. ....|++|.++|||.||.|+.. .+.++..++.+++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccccC
Confidence 389999999999999973 3446899999999999988844 466888888777532
Q ss_pred ------------------ccEEEEeccccHHHHHHHHHHcCCCeEEE-E------cCccccccceeEEEEEc------CC
Q 007090 404 ------------------RQTLLFSATMPRKVEKLAREILSDPVRVT-V------GEVGMANEDITQVVHVI------PS 452 (618)
Q Consensus 404 ------------------~q~i~~SAT~~~~~~~l~~~~~~~~~~i~-~------~~~~~~~~~i~q~~~~~------~~ 452 (618)
|||++||+...+.++.++..+|.|..-.. . +..+.....+.|.+..+ ..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 69999999999999999999998742111 1 12222233444554433 24
Q ss_pred CcccHHHHHHhcCCCCC---CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 007090 453 DAEKLPWLLEKLPGMID---DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (618)
Q Consensus 453 ~~~k~~~l~~~l~~~~~---~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~ 529 (618)
++.++.+++..|-..+. ..++|||+|++-++.++++++++..+.++.||.+.++.+-.++++.|..|+..||++|..
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 56788888776654332 348999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--ccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCC------CCeEEEEEecCccHHHHHHHHHHHHHc
Q 007090 530 AA--RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD------KDGTAYTLVTQKEARFAGELVNSLIAA 593 (618)
Q Consensus 530 ~~--~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~------~~g~~~~l~~~~d~~~~~~i~~~l~~~ 593 (618)
++ |+.+|.||+.||+|.+|.+|.+|...+.-.+|..+ ..-+|..++++.|..-+..++..-..+
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGterAA 683 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTERAA 683 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHHHHH
Confidence 99 99999999999999999999999765544433321 236899999999999999988765443
No 75
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-32 Score=316.82 Aligned_cols=304 Identities=20% Similarity=0.313 Sum_probs=218.5
Q ss_pred HHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEE
Q 007090 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (618)
Q Consensus 253 ~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 332 (618)
.+.+..+.+++.+|++|+||||||++ +|.+...... +...+++++.|+|..|..++..+.... +..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 35566677888999999999999985 7876554322 113367788999999988877776654 3444334
Q ss_pred ECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCChHH-HHHHHHhcCCCccEEEEe
Q 007090 333 YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 333 ~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah-~~~~~~~~~~-i~~i~~~~~~~~q~i~~S 410 (618)
+|.....+. ....++.|+|+|+|.|++.+..+. .++.+++||||||| ++++.+|.-. +..++ ..+++.|+|+||
T Consensus 143 VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il-~~rpdLKlIlmS 218 (1283)
T TIGR01967 143 VGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLL-PRRPDLKIIITS 218 (1283)
T ss_pred EeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHH-hhCCCCeEEEEe
Confidence 443211111 023468899999999999986654 58999999999999 6888887765 44444 346789999999
Q ss_pred ccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC-----cccHHHHHHhcCCC--CCCCcEEEEcCChhHH
Q 007090 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPGM--IDDGDVLVFASKKTTV 483 (618)
Q Consensus 411 AT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~-----~~k~~~l~~~l~~~--~~~~~vLVF~~~~~~~ 483 (618)
||+.. ..+.+.|...|+ +.+... ...+...+...... ..+...+...+... ...|.+|||+++..++
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 99974 456666655564 333221 12233333322211 11223333322211 1358999999999999
Q ss_pred HHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCC-----------
Q 007090 484 DEIESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR----------- 549 (618)
Q Consensus 484 ~~l~~~L~~~~---~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~----------- 549 (618)
+.+++.|.+.+ +.+..+||.+++.+|.+++..+ +..+|||||+++++|||||+|++||+++.+.
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 99999998764 4588999999999999996654 3479999999999999999999999998542
Q ss_pred -------CHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 550 -------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 550 -------~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
|...|.||.||+||.| +|.||+|++..+.
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~--~G~cyRLyte~~~ 406 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA--PGICIRLYSEEDF 406 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC--CceEEEecCHHHH
Confidence 5679999999999998 8999999997654
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.8e-32 Score=298.45 Aligned_cols=322 Identities=16% Similarity=0.206 Sum_probs=220.5
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~-~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
..|+|+|.+++..++. + +..++++|||+|||++.+.. +.++ +.++|||||+..|+.||.+++.+++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~a-a~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTA-ACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHH-HHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 5799999999998884 3 47899999999999986543 3333 3448999999999999999999997
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--------cccccCceeEEEecchhhhhcCCChHHHH
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--------~~~~l~~~~~iIvDEah~~~~~~~~~~i~ 394 (618)
......+..+.|+.... .....+|+|+|+..+.....+ ..+.-..+++||+||||++.. ....
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54445555555543221 122478999999987543221 112234689999999999753 4455
Q ss_pred HHHHhcCCCccEEEEeccccHHHH--HHHHHHcCCCeEEEEcCccccc----cceeEEEEEcC-----------------
Q 007090 395 SIVGQIRPDRQTLLFSATMPRKVE--KLAREILSDPVRVTVGEVGMAN----EDITQVVHVIP----------------- 451 (618)
Q Consensus 395 ~i~~~~~~~~q~i~~SAT~~~~~~--~l~~~~~~~~~~i~~~~~~~~~----~~i~q~~~~~~----------------- 451 (618)
.++..+. ....+++|||+.+.-. ..+..+++ |......-..... ..+...-..++
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5666553 3457999999964321 12233333 2222221110000 01111111111
Q ss_pred -----CCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceEE
Q 007090 452 -----SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVL 524 (618)
Q Consensus 452 -----~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~VL 524 (618)
....|+..+..++.... ...++||||.+...+..++..|. +..|||.+++.+|.++++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 12234444433443221 35699999999999999988872 45699999999999999999875 78999
Q ss_pred EecccccccCCcCCccEEEEcCCC-CCHHHHHHHHhhcccCCCC------CeEEEEEecCc--cHHHHHHHHHHHHHcC
Q 007090 525 IATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDK------DGTAYTLVTQK--EARFAGELVNSLIAAG 594 (618)
Q Consensus 525 VaT~~~~~Gldi~~v~~VI~~~~p-~~~~~y~Qr~GR~gR~g~~------~g~~~~l~~~~--d~~~~~~i~~~l~~~~ 594 (618)
|+|+++.+|+|+|++++||+++.| .|...|+||+||++|.+.+ ....|+|++.. +..+..+-.++|..-|
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 999999999999999999999988 4999999999999999832 13348999986 4556666666665443
No 77
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-33 Score=293.46 Aligned_cols=298 Identities=23% Similarity=0.303 Sum_probs=226.8
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEE
Q 007090 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (618)
Q Consensus 252 Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~ 331 (618)
.++.+..|..+--+|+||+||||||++ +|.+.+-......+..++..+=|..|+|..|..++.++..-+..++-.|.+
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 456778888889999999999999987 898888777655544553355599999999999988887766667777777
Q ss_pred EECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCCh-HHHHHHHHhcCC--------
Q 007090 332 VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE-PQIRSIVGQIRP-------- 402 (618)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~-~~i~~i~~~~~~-------- 402 (618)
.+..... +...+.|.++|.|.|++.+. +++.|+++++|||||||. .... ..+-.+++++-+
T Consensus 339 qIRfd~t------i~e~T~IkFMTDGVLLrEi~-~DflL~kYSvIIlDEAHE---RSvnTDILiGmLSRiV~LR~k~~ke 408 (1172)
T KOG0926|consen 339 QIRFDGT------IGEDTSIKFMTDGVLLREIE-NDFLLTKYSVIILDEAHE---RSVNTDILIGMLSRIVPLRQKYYKE 408 (1172)
T ss_pred EEEeccc------cCCCceeEEecchHHHHHHH-HhHhhhhceeEEechhhh---ccchHHHHHHHHHHHHHHHHHHhhh
Confidence 7665444 34468899999999999985 455699999999999995 2222 233355554422
Q ss_pred -----CccEEEEecccc---------------HHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHH
Q 007090 403 -----DRQTLLFSATMP---------------RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (618)
Q Consensus 403 -----~~q~i~~SAT~~---------------~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (618)
..++|+||||+. |-+..-+++| |+.|++.. +....++.+...|.+.++.
T Consensus 409 ~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQf---PVsIHF~k--------rT~~DYi~eAfrKtc~IH~ 477 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQF---PVSIHFNK--------RTPDDYIAEAFRKTCKIHK 477 (1172)
T ss_pred hcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccC---ceEEEecc--------CCCchHHHHHHHHHHHHhh
Confidence 347999999983 2222223333 44444332 2222344445566666666
Q ss_pred hcCCCCCCCcEEEEcCChhHHHHHHHHHHh--------------------------------------------------
Q 007090 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQ-------------------------------------------------- 492 (618)
Q Consensus 463 ~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~-------------------------------------------------- 492 (618)
.|. .|.||||+..+.+++.|+..|++
T Consensus 478 kLP----~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d 553 (1172)
T KOG0926|consen 478 KLP----PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDID 553 (1172)
T ss_pred cCC----CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhh
Confidence 664 79999999999999999999986
Q ss_pred -------------------------------------------------CCCcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 007090 493 -------------------------------------------------KGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (618)
Q Consensus 493 -------------------------------------------------~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~V 523 (618)
..+.|..|++-++..++.+++..-..|..-|
T Consensus 554 ~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLc 633 (1172)
T KOG0926|consen 554 QELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLC 633 (1172)
T ss_pred hhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEE
Confidence 0245899999999999999999999999999
Q ss_pred EEecccccccCCcCCccEEEE--------cCCCCCHHHH----------HHHHhhcccCCCCCeEEEEEecCc
Q 007090 524 LIATDVAARGLDIKSIKSVVN--------FDIARDMDMH----------VHRIGRTGRAGDKDGTAYTLVTQK 578 (618)
Q Consensus 524 LVaT~~~~~Gldi~~v~~VI~--------~~~p~~~~~y----------~Qr~GR~gR~g~~~g~~~~l~~~~ 578 (618)
+|||++|++.|.||+|++||. ||.-.+++.| -||+||+||+| +|+||+||++.
T Consensus 634 VVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg--pGHcYRLYSSA 704 (1172)
T KOG0926|consen 634 VVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG--PGHCYRLYSSA 704 (1172)
T ss_pred EEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC--CCceeehhhhH
Confidence 999999999999999999994 6666666555 39999999999 89999999974
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.5e-32 Score=302.04 Aligned_cols=331 Identities=19% Similarity=0.273 Sum_probs=263.6
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 241 SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 241 ~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
...|...++|-|.++|...+.|+|+++.+|||.||+++|.+|++.. ++.+|||.|..+|..... .+
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv---~~ 323 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQV---TH 323 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHH---Hh
Confidence 3458899999999999999999999999999999999999999765 557999999999987654 44
Q ss_pred HHhhcCceEEEEECCCChHHHH---HHHHcC---CcEEEeChHHHHHHHH--ccccccCc---eeEEEecchhhhhcCC-
Q 007090 321 FAKSHGIRVSAVYGGMSKLDQF---KELKAG---CEIVIATPGRLIDMLK--MKALTMSR---VTYLVLDEADRMFDLG- 388 (618)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~---~~l~~~---~dIiv~Tp~~L~~~l~--~~~~~l~~---~~~iIvDEah~~~~~~- 388 (618)
+ ...++....+.++....++. ..+..+ .+|++.||+++...-. .....+.. +.++||||||+...|+
T Consensus 324 L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 324 L-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred h-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 4 33488888888887776443 334443 7899999999875322 22233444 8999999999999997
Q ss_pred -ChHHHHHHH--HhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC-cccHHHHHHhc
Q 007090 389 -FEPQIRSIV--GQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-AEKLPWLLEKL 464 (618)
Q Consensus 389 -~~~~i~~i~--~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~-~~k~~~l~~~l 464 (618)
|.+.++.+. ..-.+...+|.+|||.+..++.-+...++-.-.. +........+.. +.+.... ......+...+
T Consensus 403 dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~--yeV~~k~~~~~~~~~~~~~ 479 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLK--YEVSPKTDKDALLDILEES 479 (941)
T ss_pred cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCce--EEEEeccCccchHHHHHHh
Confidence 777777543 2223457899999999999888777766532111 112222223322 2233222 34455566666
Q ss_pred CCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE
Q 007090 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (618)
Q Consensus 465 ~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~ 544 (618)
......+.+||||.++.+|+.++..|...++.+..+|++|+..+|..+-..|..++++|+|||=+++.|+|-|+|+.||+
T Consensus 480 ~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 480 KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE
Confidence 66667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHH
Q 007090 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (618)
Q Consensus 545 ~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l 590 (618)
|.+|.+++.|.|-+||+||.| ....|+.|+...|...+..++..-
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG-~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDG-LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCCchhHHHHHHhccccCcCC-CcceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999999999 679999999999988877776654
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=298.24 Aligned_cols=333 Identities=23% Similarity=0.336 Sum_probs=255.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
....+...+.+.|...|+.+|.+|+..+.+|+++|++.+||||||.+|++|++.+++..+ ..++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 344457788888999999999999999999999999999999999999999999998865 33789999999999
Q ss_pred HHHHHHHHHHHhhcC--ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc----cccCceeEEEecchhhhh
Q 007090 312 HQIYLETKKFAKSHG--IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA----LTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 312 ~q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~----~~l~~~~~iIvDEah~~~ 385 (618)
+...+.+.++....+ ++.....|.+...+....+.+.++|++|||.+|..++.+.. ..++.+.+|||||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999998887 66666666666655545567789999999999988554432 235679999999999653
Q ss_pred cCCChHHHHHHHHh-------cCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcC-------
Q 007090 386 DLGFEPQIRSIVGQ-------IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP------- 451 (618)
Q Consensus 386 ~~~~~~~i~~i~~~-------~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~------- 451 (618)
.. |+..+-.++++ .+...|+|..|||+... ..++..+.+......+...+......... ..-+
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~-~~~p~~~~~~~ 285 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFV-RREPPIRELAE 285 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEE-EeCCcchhhhh
Confidence 22 44444444333 34578999999999754 55777777776666444333333222222 2211
Q ss_pred ----CCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHH----HHHHhCC----CcEEEEeCCCCHHHHHHHHHHHhcC
Q 007090 452 ----SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIE----SQLAQKG----FKAAALHGDKDQASRMEILQKFKSG 519 (618)
Q Consensus 452 ----~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~----~~L~~~~----~~~~~l~g~~~~~~r~~~~~~F~~g 519 (618)
+...-...+...+.. ..-++|+|+.+...++.+. ..+...+ ..+..+++++...+|.++...|+.|
T Consensus 286 ~~r~s~~~~~~~~~~~~~~--~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 286 SIRRSALAELATLAALLVR--NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hcccchHHHHHHHHHHHHH--cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 111112222322222 2458999999999999997 4555555 5789999999999999999999999
Q ss_pred CceEEEecccccccCCcCCccEEEEcCCCC-CHHHHHHHHhhcccCCCCCeEEEEEec
Q 007090 520 VYHVLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (618)
Q Consensus 520 ~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~-~~~~y~Qr~GR~gR~g~~~g~~~~l~~ 576 (618)
+..++++|++++-|+||-++..||+++.|. +...++||.||+||.+ +.+..+.+..
T Consensus 364 ~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~-~~~l~~~v~~ 420 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG-QESLVLVVLR 420 (851)
T ss_pred CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC-CCceEEEEeC
Confidence 999999999999999999999999999999 8999999999999998 4455555544
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.5e-32 Score=265.06 Aligned_cols=335 Identities=21% Similarity=0.313 Sum_probs=245.5
Q ss_pred HHHHHHHC-CCCCC-cHHHHHHHHHHhcC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHH
Q 007090 236 LMHAISKQ-GYEKP-TSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (618)
Q Consensus 236 l~~~l~~~-~~~~~-~~~Q~~~i~~i~~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~ 312 (618)
+...|++. |+.++ ++.|.+++..+..+ +||.+++|||+||+++|.||+|.+ +..+||+.|..+|..
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 44555554 54443 68999999988755 799999999999999999999987 447899999999988
Q ss_pred HHHHHHHHHHhhcCceEEEEECCCChHHHHH---HH---HcCCcEEEeChHHHHH-----HHHccccccCceeEEEecch
Q 007090 313 QIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---EL---KAGCEIVIATPGRLID-----MLKMKALTMSRVTYLVLDEA 381 (618)
Q Consensus 313 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l---~~~~dIiv~Tp~~L~~-----~l~~~~~~l~~~~~iIvDEa 381 (618)
...+-+.++ .+.+..+..-.+..+.-+ +| +....+++.||+.-.. +|+ ...+-..+.|+|||||
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechh
Confidence 877777766 555555555544443322 22 2356799999987432 221 1122345789999999
Q ss_pred hhhhcCC--ChHHHHHH--HHhcCCCccEEEEeccccHHHHHHHHH--HcCCCeEEEEcCcccccccee---EEEEEcCC
Q 007090 382 DRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLARE--ILSDPVRVTVGEVGMANEDIT---QVVHVIPS 452 (618)
Q Consensus 382 h~~~~~~--~~~~i~~i--~~~~~~~~q~i~~SAT~~~~~~~l~~~--~~~~~~~i~~~~~~~~~~~i~---q~~~~~~~ 452 (618)
|....|| |.+.+..+ ++..-+....+.+|||.++.+++.+-. .+++|+.+.-... ...+.. +.-..+..
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~--FR~NLFYD~~~K~~I~D 228 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT--FRDNLFYDNHMKSFITD 228 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc--hhhhhhHHHHHHHHhhh
Confidence 9999997 77766643 333335677999999999998876544 3556765532211 111100 00011111
Q ss_pred CcccHHHHH-HhcC------CC--CCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 007090 453 DAEKLPWLL-EKLP------GM--IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (618)
Q Consensus 453 ~~~k~~~l~-~~l~------~~--~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~V 523 (618)
....+..+. ..|- .. ...|--||||.|+..+++++-.|...|++...+|.++...+|..+-+.|++|++.|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 111111111 1111 00 01356799999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHH
Q 007090 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (618)
Q Consensus 524 LVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~ 589 (618)
++||..++.|+|-|+|++||+.++|.|+.-|.|-.||+||.| ++..|..+++.+|..-+.-|+..
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDG-k~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDG-KRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCC-CccceeeeecccchHHHHHHHhh
Confidence 999999999999999999999999999999999999999999 78999999999998776666544
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-30 Score=293.98 Aligned_cols=334 Identities=19% Similarity=0.183 Sum_probs=214.4
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..|.|+|..++..++.. ..+|++.++|.|||+.+.+.+-..+.. +...++|||||+ .|+.||..++.+..
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 46899999998877643 478999999999999875544333322 224569999997 89999999997653
Q ss_pred hcCceEEEEECCCChHHHH---HHHHcCCcEEEeChHHHHHHHH-ccccccCceeEEEecchhhhhcCC--ChHHHHHHH
Q 007090 324 SHGIRVSAVYGGMSKLDQF---KELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLG--FEPQIRSIV 397 (618)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~---~~l~~~~dIiv~Tp~~L~~~l~-~~~~~l~~~~~iIvDEah~~~~~~--~~~~i~~i~ 397 (618)
++....+.++. ..... ...+...+++|+|++.+...-. ...+.-..+++|||||||++.... -......+.
T Consensus 223 --~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 --NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred --CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 44444333321 11000 0112246899999988865211 112223478999999999986321 112222222
Q ss_pred HhcCCCccEEEEeccccH-HHH------------------HH-------------HH-----------------HHcCC-
Q 007090 398 GQIRPDRQTLLFSATMPR-KVE------------------KL-------------AR-----------------EILSD- 427 (618)
Q Consensus 398 ~~~~~~~q~i~~SAT~~~-~~~------------------~l-------------~~-----------------~~~~~- 427 (618)
........++++||||-. ..+ .+ +. .++.+
T Consensus 300 ~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 300 QLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred HHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 222344678999999831 000 00 00 01100
Q ss_pred ----------------------------------CeEEEEcC--ccccccceeEEEEE----------------------
Q 007090 428 ----------------------------------PVRVTVGE--VGMANEDITQVVHV---------------------- 449 (618)
Q Consensus 428 ----------------------------------~~~i~~~~--~~~~~~~i~q~~~~---------------------- 449 (618)
.+.+.... +........+.+..
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 00000000 00000000011000
Q ss_pred --------------cCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHH
Q 007090 450 --------------IPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQASRMEILQ 514 (618)
Q Consensus 450 --------------~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~-~~~~~~~~l~g~~~~~~r~~~~~ 514 (618)
......|..+|...+... ...++||||+++..+..+++.|+ ..|+.+..+||++++.+|.++++
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 001123566677766543 35699999999999999999994 56999999999999999999999
Q ss_pred HHhcC--CceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHH
Q 007090 515 KFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 515 ~F~~g--~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
.|+++ ...|||||+++++|+|++.+++|||||+||||..|.||+||+||.|++ +.+.+++..........|.+.+..
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~-~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK-HDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCC-ceEEEEEccCCCCHHHHHHHHHhh
Confidence 99984 699999999999999999999999999999999999999999999954 444444333332234444444444
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=9.8e-31 Score=282.99 Aligned_cols=332 Identities=22% Similarity=0.276 Sum_probs=248.6
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCC--ccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 244 GYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP--ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~-~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
+|..++.+|..++|.++ ++.++|+|||||+|||..|+|.+|+.+..+. -...+++-++++|+|+++||..+++.+.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 56788999999999987 5679999999999999999999998886521 22345678999999999999999999998
Q ss_pred HHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc---ccccCceeEEEecchhhhhcCCChHHHHHHH
Q 007090 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (618)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~ 397 (618)
-+...|+.|.-+.|........ +. .++|||+||+++--.-++. ...++.+.+|||||+|.+-+ ..++.++.|+
T Consensus 187 kl~~~gi~v~ELTGD~ql~~te--i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiV 262 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQLTKTE--IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIV 262 (1230)
T ss_pred hcccccceEEEecCcchhhHHH--HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHH
Confidence 8888899999999987665442 22 4999999999974332221 22467799999999996654 4566777666
Q ss_pred Hhc-------CCCccEEEEeccccHHHHHHHHHHcCCC-eEEEEcCccccccceeEEEEEcCCCc----------ccHHH
Q 007090 398 GQI-------RPDRQTLLFSATMPRKVEKLAREILSDP-VRVTVGEVGMANEDITQVVHVIPSDA----------EKLPW 459 (618)
Q Consensus 398 ~~~-------~~~~q~i~~SAT~~~~~~~l~~~~~~~~-~~i~~~~~~~~~~~i~q~~~~~~~~~----------~k~~~ 459 (618)
.+. ....+++++|||+|+ .+.+++.+--|| .-+........+..+.|.+.-..... .....
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 554 356789999999985 566777665552 23333333444444555554433221 11223
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC-----------------------CCcEEEEeCCCCHHHHHHHHHHH
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----------------------GFKAAALHGDKDQASRMEILQKF 516 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~-----------------------~~~~~~l~g~~~~~~r~~~~~~F 516 (618)
+.+.+. .+.++||||.++....+.++.|.+. ...++..|.++...+|.-+...|
T Consensus 342 v~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 342 VVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 344443 3568999999999999999998753 13478899999999999999999
Q ss_pred hcCCceEEEecccccccCCcCCccEEEE-----cCCCC------CHHHHHHHHhhcccCC-CCCeEEEEEecCccHHHHH
Q 007090 517 KSGVYHVLIATDVAARGLDIKSIKSVVN-----FDIAR------DMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEARFAG 584 (618)
Q Consensus 517 ~~g~~~VLVaT~~~~~Gldi~~v~~VI~-----~~~p~------~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~d~~~~~ 584 (618)
..|.++||+||..++.|+|+|. .+||. ||... ++.+.+|.+|||||.+ ...|.++.+.+.+-.....
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred hcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999997 45553 44333 4677899999999998 6678888888876444433
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=249.75 Aligned_cols=363 Identities=19% Similarity=0.306 Sum_probs=271.1
Q ss_pred ccCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc
Q 007090 229 DCGFSTQLMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (618)
Q Consensus 229 ~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt 307 (618)
+++.+.+..+.|+.. ...+++|.|..+++..+++.+++++.|||.||+++|.+|+|.. ...+||+||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 455556666665543 5678999999999999999999999999999999999999876 5668999999
Q ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH---HHH---cCCcEEEeChHHHHH---HHHc--cccccCceeEE
Q 007090 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK---AGCEIVIATPGRLID---MLKM--KALTMSRVTYL 376 (618)
Q Consensus 308 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~---~~~dIiv~Tp~~L~~---~l~~--~~~~l~~~~~i 376 (618)
..|.....-.++.+ |+....+....++.+... .+. ....+|+.||+.+.. ++.+ +.+....+.+|
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99988766666665 777666666555543321 111 235799999999864 2222 33456788999
Q ss_pred EecchhhhhcCC--ChHHHH--HHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCC
Q 007090 377 VLDEADRMFDLG--FEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (618)
Q Consensus 377 IvDEah~~~~~~--~~~~i~--~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~ 452 (618)
.|||+|+...|+ |.+.+. .++.+--+...+++++||.+..+...+...+.--...++ ..+...++....+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCC
Confidence 999999999997 565554 455555577889999999998877776665542111111 223333333333332222
Q ss_pred -CcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 007090 453 -DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (618)
Q Consensus 453 -~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 531 (618)
...-...+..++.....+..-||||-++.+++.++..|+..|+....+|.+|.+.++.-+-+.|..|++.|+|+|-+++
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 2233455666666555556789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCccEEEEcCCCCCHHHHHH-------------------------------------------HHhhcccCCCCC
Q 007090 532 RGLDIKSIKSVVNFDIARDMDMHVH-------------------------------------------RIGRTGRAGDKD 568 (618)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~~~~~y~Q-------------------------------------------r~GR~gR~g~~~ 568 (618)
.|+|-|+|++||+..+|.+++.|.| -.||+||.+ .+
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~-~~ 457 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD-MK 457 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC-Cc
Confidence 9999999999999999999999999 679999998 46
Q ss_pred eEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHHHhhcc
Q 007090 569 GTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKVI 609 (618)
Q Consensus 569 g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~~~~~~ 609 (618)
..|+.++--.|......++..- ..++.--.+|..+|..++
T Consensus 458 a~cilyy~~~difk~ssmv~~e-~~g~q~ly~mv~y~~d~s 497 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISSMVQME-NTGIQKLYEMVRYAADIS 497 (695)
T ss_pred ccEEEEechHHHHhHHHHHHHH-hhhHHHHHHHHHHHhhhH
Confidence 8999999888877666666543 333333345555554433
No 84
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.3e-29 Score=244.55 Aligned_cols=202 Identities=54% Similarity=0.880 Sum_probs=185.3
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 227 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
|.++++++.+.+.+...|+..|+++|.++++.+++++++++++|||+|||++|++|++.++...+ ..+++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999987642 135789999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc
Q 007090 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (618)
Q Consensus 307 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~ 386 (618)
|++|+.|+...+..+....++.+..+.|+.........+..+++|+|+||+.|.+.+.+....+..++++|+||||.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778999999999888777666666899999999999999988778889999999999999998
Q ss_pred CCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEE
Q 007090 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (618)
Q Consensus 387 ~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i 431 (618)
.++...+..++..+++.+|++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999999999999999999999999999999988765
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.2e-29 Score=277.38 Aligned_cols=329 Identities=19% Similarity=0.208 Sum_probs=234.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+++|..+--.+. ..-|..++||+|||++|++|++..++. |..|+||+||+.||.|.++++..+...+|
T Consensus 82 ~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 45566665544444 446899999999999999999987753 45699999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc-cccc-----CceeEEEecchhhhhcC------------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALTM-----SRVTYLVLDEADRMFDL------------ 387 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~-~~~l-----~~~~~iIvDEah~~~~~------------ 387 (618)
+++.+++||.+...+...+ .+||+++||++| .+++..+ .+.+ +.+.++||||||.|+-.
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 9999999998877664443 589999999999 8888655 2333 58999999999987310
Q ss_pred ----CChHHHHHHHHhcCCC------------------------------------------------------------
Q 007090 388 ----GFEPQIRSIVGQIRPD------------------------------------------------------------ 403 (618)
Q Consensus 388 ----~~~~~i~~i~~~~~~~------------------------------------------------------------ 403 (618)
.....+..++..+...
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 0111111111111110
Q ss_pred ----------------------------------------------------------------------ccEEEEeccc
Q 007090 404 ----------------------------------------------------------------------RQTLLFSATM 413 (618)
Q Consensus 404 ----------------------------------------------------------------------~q~i~~SAT~ 413 (618)
.++-+||+|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 1333444444
Q ss_pred cHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHh
Q 007090 414 PRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQ 492 (618)
Q Consensus 414 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~ 492 (618)
.....++...|-- ++...+.. ...........++.+...|+..+++.+..... +.++||||+|...++.++.+|.+
T Consensus 390 ~te~~Ef~~iY~l-~Vv~IPtn--kp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQIYNL-EVVVIPTN--RSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHHHhCC-CEEECCCC--CCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 4333333333321 11111111 11111111112333456788888877765443 45999999999999999999999
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCC----------------------------------
Q 007090 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS---------------------------------- 538 (618)
Q Consensus 493 ~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~---------------------------------- 538 (618)
.|+++.+||+.+.+.++..+.+.|+.|. |+|||++|+||+||.=
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999994 9999999999999972
Q ss_pred ----ccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHH----HHHHHHHHHc
Q 007090 539 ----IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAA 593 (618)
Q Consensus 539 ----v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~----~~i~~~l~~~ 593 (618)
-=+||--..+.|----.|-.||+||.| .+|.+..|+|-.|.-+- ..+.+.+...
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQG-DPGss~f~lSleD~l~~~f~~~~~~~~~~~~ 606 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDNLMRIFASERVASMMRRL 606 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHHHHHhChHHHHHHHHHc
Confidence 236787777888888889999999999 58999999998875442 3444455443
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=9.8e-29 Score=276.35 Aligned_cols=313 Identities=20% Similarity=0.272 Sum_probs=215.7
Q ss_pred CCCcHHHHHHHHHHhcC---CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~---~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
..|++.|+++++.+..+ +++++.++||||||.+|+.++...+. .|..+||++||++|+.|+++.+++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 78999999999999999877655542 26789999999999999999888754
Q ss_pred hhcCceEEEEECCCChHHHH---HHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCC---hHHHH-
Q 007090 323 KSHGIRVSAVYGGMSKLDQF---KELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF---EPQIR- 394 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~---~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~---~~~i~- 394 (618)
+..+..++|+.+..+.. ..+. ...+|+|+|++.+. ..+.++++|||||+|...-.+. ..+.+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 67888899988765443 3333 34799999998763 3577899999999997543321 11122
Q ss_pred -HHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCc--cccccceeEEEEE--cCC-C-cccHHHHHHhcCCC
Q 007090 395 -SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV--GMANEDITQVVHV--IPS-D-AEKLPWLLEKLPGM 467 (618)
Q Consensus 395 -~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~q~~~~--~~~-~-~~k~~~l~~~l~~~ 467 (618)
.++.....+.+++++|||++......+.. +....+..... +...+.+.-.... ... . ..-...++..+...
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 23334456789999999988654443321 11111111111 1111111111000 000 0 00112344444433
Q ss_pred CCCC-cEEEEcCCh------------------------------------------------------------hHHHHH
Q 007090 468 IDDG-DVLVFASKK------------------------------------------------------------TTVDEI 486 (618)
Q Consensus 468 ~~~~-~vLVF~~~~------------------------------------------------------------~~~~~l 486 (618)
+..+ ++|||+|.+ ..++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 3333 788887752 145677
Q ss_pred HHHHHhC--CCcEEEEeCCCCH--HHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC--CCC----------
Q 007090 487 ESQLAQK--GFKAAALHGDKDQ--ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI--ARD---------- 550 (618)
Q Consensus 487 ~~~L~~~--~~~~~~l~g~~~~--~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~--p~~---------- 550 (618)
++.|.+. +.++..+|+++.+ .++..+++.|++|+..|||+|+++++|+|+|+|..|+.++. +.+
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 8888775 7889999999864 57899999999999999999999999999999999975543 333
Q ss_pred HHHHHHHHhhcccCCCCCeEEEEEecCcc
Q 007090 551 MDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (618)
Q Consensus 551 ~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d 579 (618)
.+.|+|++||+||.+ +.|.++......+
T Consensus 523 ~~~l~q~~GRagR~~-~~g~viiqT~~p~ 550 (679)
T PRK05580 523 FQLLTQVAGRAGRAE-KPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHhhccCCC-CCCEEEEEeCCCC
Confidence 267899999999987 5789887665443
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.7e-29 Score=271.93 Aligned_cols=179 Identities=18% Similarity=0.297 Sum_probs=143.7
Q ss_pred cccCCCHHHHHHHHHhcCeeec-cCCCCCccCCccccCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCcE
Q 007090 195 SISGMSEQDVMEYKKSLAIRVS-GFDVPRPVKTFEDCGFSTQLMHAIS-----KQGYEKP---TSIQCQALPIILSGRDI 265 (618)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~-~~~~p~p~~~~~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~i~~~~dv 265 (618)
.+.+++.++.......+..++. |..+.. .-.+.+.+...+.+.+. ..|+..| +|+|.++++.++.++++
T Consensus 33 ~~~~lsd~eL~~kt~~~k~~l~~~~~ld~--~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gv 110 (970)
T PRK12899 33 KFSSLSDDELRNKTAELKQRYQDGESLDK--LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGF 110 (970)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHcCCchHH--HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCe
Confidence 5677888777655444433332 221111 11356778888887776 5688888 99999999999999999
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHH
Q 007090 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345 (618)
Q Consensus 266 l~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 345 (618)
++.++||+|||++|++|++.+++. +..++||+||++||.|+++++..+...+++++.+++||.+...+...+
T Consensus 111 IAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y 182 (970)
T PRK12899 111 ITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY 182 (970)
T ss_pred EEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc
Confidence 999999999999999999988764 223899999999999999999999999999999999999988876554
Q ss_pred HcCCcEEEeChHHH-HHHHHccccccC-------ceeEEEecchhhhh
Q 007090 346 KAGCEIVIATPGRL-IDMLKMKALTMS-------RVTYLVLDEADRMF 385 (618)
Q Consensus 346 ~~~~dIiv~Tp~~L-~~~l~~~~~~l~-------~~~~iIvDEah~~~ 385 (618)
++||+|+||++| .++++.+...++ .+.++||||||.|+
T Consensus 183 --~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 183 --QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred --CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 599999999999 999977655554 46899999999874
No 88
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=9.1e-29 Score=280.78 Aligned_cols=332 Identities=18% Similarity=0.279 Sum_probs=223.8
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..|+|+|.+++.|+. +|.++|++.+||.|||++.+ .++.++.... +....+|||||. .+..||.+++.+|
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 368999999999986 57889999999999999754 3444443321 122347999996 5667899999999
Q ss_pred HhhcCceEEEEECCCChHHHHHH---HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHH
Q 007090 322 AKSHGIRVSAVYGGMSKLDQFKE---LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~---l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~ 398 (618)
++ .+++..++|.......... .....+|+|+|++.+..... .+.--.+.+|||||||++.+.. ..+...+.
T Consensus 242 ~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr 315 (1033)
T PLN03142 242 CP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMR 315 (1033)
T ss_pred CC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHH
Confidence 86 5666666665433222211 12358999999998876432 2223357899999999987543 34445555
Q ss_pred hcCCCccEEEEeccccHH-HHHH----------------------------------------HHHHcCC----------
Q 007090 399 QIRPDRQTLLFSATMPRK-VEKL----------------------------------------AREILSD---------- 427 (618)
Q Consensus 399 ~~~~~~q~i~~SAT~~~~-~~~l----------------------------------------~~~~~~~---------- 427 (618)
.++ ....+++||||-.+ +..+ ++.++-.
T Consensus 316 ~L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred Hhh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 554 34468899998321 1111 0000000
Q ss_pred C----eEEEEcCcc--------------------cccc-------ceeEE---------------E---EEcCCCcccHH
Q 007090 428 P----VRVTVGEVG--------------------MANE-------DITQV---------------V---HVIPSDAEKLP 458 (618)
Q Consensus 428 ~----~~i~~~~~~--------------------~~~~-------~i~q~---------------~---~~~~~~~~k~~ 458 (618)
| ..+.+.-.. .... ..++. + ..+-..+.|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 0 000010000 0000 00000 0 00001234555
Q ss_pred HHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC---CceEEEecccccccC
Q 007090 459 WLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATDVAARGL 534 (618)
Q Consensus 459 ~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g---~~~VLVaT~~~~~Gl 534 (618)
.|..+|..... +.+||||+.....++.|.++|...++.+..|||+++..+|..++..|+.. ...+|++|.+++.||
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 55555554433 45999999999999999999999999999999999999999999999753 346789999999999
Q ss_pred CcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCC-eEEEEEecCc--cHHHHHHHHHHH
Q 007090 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK--EARFAGELVNSL 590 (618)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~-g~~~~l~~~~--d~~~~~~i~~~l 590 (618)
|+..+++||+||++|||..+.|++||++|.|++. -.+|.|++.. +...+.+..+.+
T Consensus 555 NLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 555 NLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred chhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999543 5578888875 445554444433
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=5.3e-29 Score=265.88 Aligned_cols=294 Identities=21% Similarity=0.276 Sum_probs=204.0
Q ss_pred CCCcHHHHHHHHHHhc----CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILS----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~----~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..|+++|++++..+.. .+..+++.|||+|||.+++.. +..+ +..+||||||++|+.||.+.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~-~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEA-IAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHH-HHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 5799999999999988 899999999999999875433 3333 333999999999999998777776
Q ss_pred HhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC
Q 007090 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~ 401 (618)
.... .....+||..... .. ..|+|+|++.+........+....+.+|||||||++.... ...+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLS 171 (442)
T ss_pred cCCc--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhh
Confidence 5321 1233344433211 11 4699999999987532223334479999999999976543 333333333
Q ss_pred CCccEEEEeccccHHHHH---HHHHHcCCCeEEEEcCccccc------cceeEEEEEcC---------------------
Q 007090 402 PDRQTLLFSATMPRKVEK---LAREILSDPVRVTVGEVGMAN------EDITQVVHVIP--------------------- 451 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~~~~---l~~~~~~~~~~i~~~~~~~~~------~~i~q~~~~~~--------------------- 451 (618)
.....++||||+++.-.. .+..+++ |+........... ..+........
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 333389999998754311 1222222 2222222111111 00111111000
Q ss_pred --------------CCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 007090 452 --------------SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (618)
Q Consensus 452 --------------~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~ 517 (618)
....+...+...+.......+++|||.+..++..++..|...++ +..++|.+++.+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 01112222233333222345999999999999999999998888 999999999999999999999
Q ss_pred cCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccC
Q 007090 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (618)
Q Consensus 518 ~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~ 564 (618)
.|.+++|+++.++.+|+|+|+++++|...+..|...|+||+||.-|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999993
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.6e-27 Score=268.24 Aligned_cols=352 Identities=18% Similarity=0.180 Sum_probs=221.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
...|+|+|+.+........-+|+.+|||+|||.++++++...+ . .+...++++.+||+++++|+++++.+++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~-----~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-D-----QGLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-H-----hCCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3589999998866555567789999999999998776655333 2 123467999999999999999999876543
Q ss_pred c--CceEEEEECCCChHHHHH--------------------HHHc-------CCcEEEeChHHHHHHHHc-cccccCce-
Q 007090 325 H--GIRVSAVYGGMSKLDQFK--------------------ELKA-------GCEIVIATPGRLIDMLKM-KALTMSRV- 373 (618)
Q Consensus 325 ~--~~~~~~~~gg~~~~~~~~--------------------~l~~-------~~dIiv~Tp~~L~~~l~~-~~~~l~~~- 373 (618)
. ...+...+|.......+. .... -++|+|||...++..+-. +...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 235566665543211110 1111 169999999888754432 22233333
Q ss_pred ---eEEEecchhhhhcCCChHHHHHHHHhc-CCCccEEEEeccccHHHHHH-HHHHcCC-CeE-------EE-EcCccc-
Q 007090 374 ---TYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKL-AREILSD-PVR-------VT-VGEVGM- 438 (618)
Q Consensus 374 ---~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~l-~~~~~~~-~~~-------i~-~~~~~~- 438 (618)
++|||||+|.+- .-....+..++..+ .....+|+||||+|..+... ...|-.. ++. ++ ......
T Consensus 438 La~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 489999999752 22233444555443 23567999999999877543 3333211 100 00 000000
Q ss_pred ----ccc----ceeEEE--EEcC-CCcccHHHHHHhcCC-CCCCCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCC
Q 007090 439 ----ANE----DITQVV--HVIP-SDAEKLPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQKG---FKAAALHGD 503 (618)
Q Consensus 439 ----~~~----~i~q~~--~~~~-~~~~k~~~l~~~l~~-~~~~~~vLVF~~~~~~~~~l~~~L~~~~---~~~~~l~g~ 503 (618)
... .....+ .... ........+++.+.. ....+++|||||++..+..+++.|++.+ ..+..+||.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 000 001111 1110 000111222222222 2235689999999999999999999764 679999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCC--C-e---
Q 007090 504 KDQASR----MEILQKF-KSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK--D-G--- 569 (618)
Q Consensus 504 ~~~~~r----~~~~~~F-~~g~---~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~--~-g--- 569 (618)
+++.+| .++++.| ++|+ ..|||||+++++|+|| +++.||....| ++.++||+||+||.+.+ + |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4577788 6666 4799999999999999 58999998777 78999999999999842 1 2
Q ss_pred -EEEEEecC-----------ccHHHHHHHHHHHHHcC---CCCCHHHHHHHh
Q 007090 570 -TAYTLVTQ-----------KEARFAGELVNSLIAAG---QNVSMELMDLAM 606 (618)
Q Consensus 570 -~~~~l~~~-----------~d~~~~~~i~~~l~~~~---~~v~~~l~~~~~ 606 (618)
.++++... .+...+.+-...|...+ ..+|.....|-.
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve 725 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIE 725 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHH
Confidence 33443211 12234444456666654 456777666643
No 91
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.97 E-value=2.1e-28 Score=253.00 Aligned_cols=294 Identities=17% Similarity=0.218 Sum_probs=232.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhc-------------Cc------eEEEEECCCChHHHHHHHHcC---------
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSH-------------GI------RVSAVYGGMSKLDQFKELKAG--------- 348 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~-------------~~------~~~~~~gg~~~~~~~~~l~~~--------- 348 (618)
..|+||||||+|..|.++++.+.+++... ++ ..........++..+..++.|
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 46999999999999999999998887651 10 000111123345556666554
Q ss_pred ----------------CcEEEeChHHHHHHHHc------cccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC----
Q 007090 349 ----------------CEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP---- 402 (618)
Q Consensus 349 ----------------~dIiv~Tp~~L~~~l~~------~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~---- 402 (618)
+|||||||.+|...+.. ....|++|+++|||.||.|+ |+.+.++..++.+++.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 89999999999999874 45679999999999999766 4446666666666542
Q ss_pred --------------------CccEEEEeccccHHHHHHHHHHcCCC---eEEEEcC-----ccccccceeEEEEEcCC--
Q 007090 403 --------------------DRQTLLFSATMPRKVEKLAREILSDP---VRVTVGE-----VGMANEDITQVVHVIPS-- 452 (618)
Q Consensus 403 --------------------~~q~i~~SAT~~~~~~~l~~~~~~~~---~~i~~~~-----~~~~~~~i~q~~~~~~~-- 452 (618)
-||+|++|+...|.++.+.+.+|.|. +.+.... .......+.|.+..++.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 27999999999999999999998873 2332222 23456678899988764
Q ss_pred ----CcccHHHHHHhc-CCCC---CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEE
Q 007090 453 ----DAEKLPWLLEKL-PGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (618)
Q Consensus 453 ----~~~k~~~l~~~l-~~~~---~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VL 524 (618)
...++..+...+ .... ..+++|||+|++-+..+|.++|++.++.++.+|.++++.+..+++..|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 345666666533 2222 34699999999999999999999999999999999999999999999999999999
Q ss_pred Eeccccc--ccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCC-----CCeEEEEEecCccHHHHHHHHHHHH
Q 007090 525 IATDVAA--RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-----KDGTAYTLVTQKEARFAGELVNSLI 591 (618)
Q Consensus 525 VaT~~~~--~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~-----~~g~~~~l~~~~d~~~~~~i~~~l~ 591 (618)
|+|.+++ +.+.|.|+++||+|++|.++..|...++..+.... ..+.|.++|+..|...+++||..-.
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~r 428 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTER 428 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHH
Confidence 9999999 99999999999999999999999998876655431 2579999999999999999986543
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-28 Score=270.55 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=237.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+++|.-+.-.+.+| -|..++||+|||+++++|++...+. |..|-|++||+.||.|.++++..+...+|
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 5778888777666555 4999999999999999999644432 34477999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHccc------cccCceeEEEecchhhhhc-------------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMSRVTYLVLDEADRMFD------------- 386 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~------~~l~~~~~iIvDEah~~~~------------- 386 (618)
+++.++.|+.+..++...+ .++|+++||+.| .++++.+. ..++.+.++||||||.|+-
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999998887665554 489999999999 88886543 2467899999999998731
Q ss_pred ---CCChHHHHHHHHhcCC-------------------------------------------------------------
Q 007090 387 ---LGFEPQIRSIVGQIRP------------------------------------------------------------- 402 (618)
Q Consensus 387 ---~~~~~~i~~i~~~~~~------------------------------------------------------------- 402 (618)
......+..+...+..
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0011111122221110
Q ss_pred --------------------------------------------------------CccEEEEeccccHHHHHHHHHHcC
Q 007090 403 --------------------------------------------------------DRQTLLFSATMPRKVEKLAREILS 426 (618)
Q Consensus 403 --------------------------------------------------------~~q~i~~SAT~~~~~~~l~~~~~~ 426 (618)
-.++.+||+|......++...|.-
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 025667777776665555544433
Q ss_pred CCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 427 ~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
+ +...+...+ ..........+.+...|+..+...+.... ...++||||++...++.++..|.+.|+++..||+.
T Consensus 389 ~-vv~IPtnkp--~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 D-VVVIPTNRP--MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred C-EEEcCCCCC--eeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 2 222211111 11111112233345678888888886532 34599999999999999999999999999999995
Q ss_pred HHHHHHHHHHHhcCCceEEEecccccccCCcCCc--------------------------------------cEEEEcCC
Q 007090 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------------------KSVVNFDI 547 (618)
Q Consensus 506 ~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v--------------------------------------~~VI~~~~ 547 (618)
+.+|...+..|..+...|+|||++|+||+||+-- =+||--..
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 8899999999999999999999999999999742 36888888
Q ss_pred CCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHH
Q 007090 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (618)
Q Consensus 548 p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~ 582 (618)
|.|.---.|-.||+||.| .+|.+..|+|-.|.-+
T Consensus 544 hesrRid~QlrGRagRQG-dpGss~f~lSleD~l~ 577 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQG-DPGSSRFYLSLEDDLM 577 (830)
T ss_pred CchHHHHHHhhcccccCC-CCCceeEEEEcCcHHH
Confidence 999988999999999999 5899999999877433
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.8e-27 Score=251.95 Aligned_cols=336 Identities=23% Similarity=0.312 Sum_probs=258.3
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 234 TQLMHAI-SKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 234 ~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~------~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
..++..+ ....| +||.-|++++.-|... .+-+++|..|||||++++++++..+- .|..+..++|
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------~G~Q~ALMAP 319 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------AGYQAALMAP 319 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--------cCCeeEEecc
Confidence 3444444 44454 7999999999998854 35699999999999999999888763 3778999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---HHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 307 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
|--||.|.+..+.+++.+.++++..+.|....... ...+.+| .+|+|+|..-+ .+...+.++.++|+||=|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccc
Confidence 99999999999999999999999999998765443 3445555 89999996443 455578899999999999
Q ss_pred hhhcCCChHHHHHHHHhcCC-CccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRP-DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~ 461 (618)
| |+-+-+..+..-.. ....++||||+-|. .++-..+++.-...+.........|....... .+...++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i~~----~~~~~v~ 463 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVIPH----ERRPEVY 463 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEecc----ccHHHHH
Confidence 9 45455555555455 68999999998664 36666666655545555555545555554433 3444444
Q ss_pred HhcCCCC-CCCcEEEEcCChhH--------HHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 462 EKLPGMI-DDGDVLVFASKKTT--------VDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 462 ~~l~~~~-~~~~vLVF~~~~~~--------~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
+.+.... .+.++.|.||-.++ +..++..|+.. +++++.+||.|+..++.+++..|++|+++|||||.+.
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 4443322 35589999988765 45666677643 5779999999999999999999999999999999999
Q ss_pred cccCCcCCccEEEEcCCC-CCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCC
Q 007090 531 ARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595 (618)
Q Consensus 531 ~~Gldi~~v~~VI~~~~p-~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~ 595 (618)
+.|+|+|+++.+|+++.- ...++.-|--||+||-+ ....|+.++.+.......+-.+.+.+...
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~-~qSyC~Ll~~~~~~~~a~~RL~im~~t~D 608 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD-LQSYCVLLYKPPLSEVAKQRLKIMRETTD 608 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCC-cceEEEEEeCCCCChhHHHHHHHHHhcCC
Confidence 999999999999998864 47888889999999977 67999999998876666666777777654
No 94
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.96 E-value=1.8e-28 Score=257.61 Aligned_cols=331 Identities=20% Similarity=0.322 Sum_probs=235.6
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..++++|.++++|+. +|-++|+..+||.|||++. +.+|.++.... ...||. ||+||...|. .|.+++.+|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~---~~~GPf-LVi~P~StL~-NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK---GIPGPF-LVIAPKSTLD-NWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc---CCCCCe-EEEeeHhhHH-HHHHHHHHh
Confidence 468999999999976 5678999999999999974 55556654421 234664 9999988877 599999999
Q ss_pred HhhcCceEEEEECCCChHHHH-HHHH--cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHH
Q 007090 322 AKSHGIRVSAVYGGMSKLDQF-KELK--AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~-~~l~--~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~ 398 (618)
++ ++++++++|........ +.+. ...+|+|+|++..+..- ..+.--.+.|+||||||++.+.. ..+..+++
T Consensus 240 ~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr 313 (971)
T KOG0385|consen 240 TP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILR 313 (971)
T ss_pred CC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcchh--hHHHHHHH
Confidence 97 78888888875433322 2222 35899999999887652 22222367899999999987653 23335555
Q ss_pred hcCCCccEEEEecccc-HHHHHH---------------------------------------------------------
Q 007090 399 QIRPDRQTLLFSATMP-RKVEKL--------------------------------------------------------- 420 (618)
Q Consensus 399 ~~~~~~q~i~~SAT~~-~~~~~l--------------------------------------------------------- 420 (618)
.+.... .+++|+|+- +++.++
T Consensus 314 ~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 554333 466677752 111111
Q ss_pred ------------------------------------------------HHHHcCCCeEEEEcCccccccceeEEEEEcCC
Q 007090 421 ------------------------------------------------AREILSDPVRVTVGEVGMANEDITQVVHVIPS 452 (618)
Q Consensus 421 ------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~ 452 (618)
.++.|..|..+.....+. -......+-.
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~----pyttdehLv~ 468 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGP----PYTTDEHLVT 468 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCC----CCCcchHHHh
Confidence 122222222221111100 0011111112
Q ss_pred CcccHHHHHHhcCCCCCC-CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC---CceEEEecc
Q 007090 453 DAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATD 528 (618)
Q Consensus 453 ~~~k~~~l~~~l~~~~~~-~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g---~~~VLVaT~ 528 (618)
.+.|+..|..+|..+... .+||||.+.....+.|.+|+--.++.++.|.|.++.++|..+++.|... ..-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 456777777776665544 4899999999999999999999999999999999999999999999864 455799999
Q ss_pred cccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC-CCCeEEEEEecCc--cHHHHHHHHHHHHHc
Q 007090 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK--EARFAGELVNSLIAA 593 (618)
Q Consensus 529 ~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~--d~~~~~~i~~~l~~~ 593 (618)
+++.|||+..+++||+||..|||+.-+|+..||+|.| .++-++|+|++.+ +...+++....|...
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld 616 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLD 616 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999999999999 4467788999986 445555555554443
No 95
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.8e-28 Score=271.81 Aligned_cols=306 Identities=20% Similarity=0.268 Sum_probs=222.8
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh-cCceE
Q 007090 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRV 329 (618)
Q Consensus 251 ~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~-~~~~~ 329 (618)
...+.+..+.++..++++|+||||||++ +|.+..-... ..+.++.++.|+|..|..+++.+....+. .|-.|
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 4455667778889999999999999987 6654443221 33567889999999999888777765543 35556
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCChHHHH-HHHHhcCCCccEE
Q 007090 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIR-SIVGQIRPDRQTL 407 (618)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah-~~~~~~~~~~i~-~i~~~~~~~~q~i 407 (618)
++.+.+.+. ......|.++|.|.|++.+..+. .|+.+++||||||| +.++.++.-.+. .++...+++.++|
T Consensus 127 GY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 127 GYSIRFESK------VSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred eEEEEeecc------CCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 666655554 23457899999999999996655 49999999999999 555555444433 4566667789999
Q ss_pred EEeccccHHHHHHHHHHcC-CCeEEEEcCccccccceeEEEEEcCCCcc-cHHHHHHhcCCC--CCCCcEEEEcCChhHH
Q 007090 408 LFSATMPRKVEKLAREILS-DPVRVTVGEVGMANEDITQVVHVIPSDAE-KLPWLLEKLPGM--IDDGDVLVFASKKTTV 483 (618)
Q Consensus 408 ~~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~i~q~~~~~~~~~~-k~~~l~~~l~~~--~~~~~vLVF~~~~~~~ 483 (618)
+||||+... .+ ..|+. -|+...-+. ...+...|........ -...+...+... ...|.+|||.+...++
T Consensus 200 imSATld~~--rf-s~~f~~apvi~i~GR----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 200 IMSATLDAE--RF-SAYFGNAPVIEIEGR----TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEecccCHH--HH-HHHcCCCCEEEecCC----ccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 999999643 44 44455 454433332 1222333322222222 222222222211 2478999999999999
Q ss_pred HHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCC-----------
Q 007090 484 DEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA----------- 548 (618)
Q Consensus 484 ~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p----------- 548 (618)
..+++.|.. ..+.+.++||.++..++.++++--..|+.+|++||++++++|.|++|++||.-+..
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999997 35789999999999999999988888888999999999999999999999964432
Q ss_pred -------CCHHHHHHHHhhcccCCCCCeEEEEEecCcc
Q 007090 549 -------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (618)
Q Consensus 549 -------~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d 579 (618)
-|-.+..||.|||||.+ +|.||.+++..+
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~--pGicyRLyse~~ 388 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG--PGICYRLYSEED 388 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC--CceEEEecCHHH
Confidence 24566679999999998 899999999854
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.5e-28 Score=267.94 Aligned_cols=319 Identities=19% Similarity=0.239 Sum_probs=230.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|++.|.-+.-.+..|+ |..+.||+|||+++.+|++...+. |..|-|++||--||.|-++++..+...+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 368888888877666665 999999999999999998877654 6778999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHHc------cccccCceeEEEecchhhhhc------------
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMFD------------ 386 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~~------~~~~l~~~~~iIvDEah~~~~------------ 386 (618)
|+++.++.++.+..+... .. .|||+++|...|. ++++. .....+.+.+.||||+|.++-
T Consensus 149 Gl~vg~i~~~~~~~~r~~-~y-~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRA-AY-NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHH-Hh-cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 999999988766654433 22 5899999997764 23321 122345788999999997631
Q ss_pred ---C-CChHHHHHHHHhcCC------------------------------------------------------------
Q 007090 387 ---L-GFEPQIRSIVGQIRP------------------------------------------------------------ 402 (618)
Q Consensus 387 ---~-~~~~~i~~i~~~~~~------------------------------------------------------------ 402 (618)
+ .....+..+...+..
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 0 001111111111100
Q ss_pred --------------------------------------------------------------------CccEEEEecccc
Q 007090 403 --------------------------------------------------------------------DRQTLLFSATMP 414 (618)
Q Consensus 403 --------------------------------------------------------------------~~q~i~~SAT~~ 414 (618)
-.++.+||+|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 024556666665
Q ss_pred HHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhC
Q 007090 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK 493 (618)
Q Consensus 415 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~ 493 (618)
....++...|.- ++...+...+. .........+.....|+..+...+.... ...++||||++...++.+++.|.+.
T Consensus 387 ~e~~Ef~~iY~l-~vv~IPtnkp~--~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~ 463 (796)
T PRK12906 387 TEEEEFREIYNM-EVITIPTNRPV--IRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA 463 (796)
T ss_pred HHHHHHHHHhCC-CEEEcCCCCCe--eeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 544444333322 22222111111 0111111223344568888888775432 3569999999999999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcC---Ccc-----EEEEcCCCCCHHHHHHHHhhcccCC
Q 007090 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAG 565 (618)
Q Consensus 494 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~---~v~-----~VI~~~~p~~~~~y~Qr~GR~gR~g 565 (618)
|+++..+|+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.|...|.|++||+||.|
T Consensus 464 gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG 541 (796)
T PRK12906 464 GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG 541 (796)
T ss_pred CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCC
Confidence 999999999998877777777777775 999999999999995 899 9999999999999999999999999
Q ss_pred CCCeEEEEEecCccHHH
Q 007090 566 DKDGTAYTLVTQKEARF 582 (618)
Q Consensus 566 ~~~g~~~~l~~~~d~~~ 582 (618)
.+|.+..|++..|.-+
T Consensus 542 -~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 542 -DPGSSRFYLSLEDDLM 557 (796)
T ss_pred -CCcceEEEEeccchHH
Confidence 6899999999987543
No 97
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.9e-28 Score=251.20 Aligned_cols=304 Identities=21% Similarity=0.266 Sum_probs=218.1
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH-hhcCceE
Q 007090 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRV 329 (618)
Q Consensus 251 ~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~-~~~~~~~ 329 (618)
+-.+.+..+..++-+|+.|+||||||++ +|.+.+-.... ...++-+..|+|..|..++.++..-. ...|-.|
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKSTQ--ipQyL~eaG~~-----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKSTQ--IPQYLAEAGFA-----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCcccc--HhHHHHhcccc-----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 3456677788899999999999999987 77655433221 12337899999999999887766543 3346666
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-hhcCCChHHHHHHHHhc---CCCcc
Q 007090 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQI---RPDRQ 405 (618)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~-~~~~~~~~~i~~i~~~~---~~~~q 405 (618)
++.+...+... ....|.++|.|.|++.+..+. .|+.+++|||||||+ -+. ...+..+++.+ +++.+
T Consensus 128 GY~IRFed~ts------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~---TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFEDSTS------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLH---TDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeEEEecccCC------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhH---HHHHHHHHHHHHhcCCCce
Confidence 66665544432 247899999999999886555 589999999999994 222 22333444433 56779
Q ss_pred EEEEeccccHHHHHHHHHHcCC-CeEEEEcCccccccceeEEEEEcCCCcccHHHHH--HhcCCCCCCCcEEEEcCChhH
Q 007090 406 TLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL--EKLPGMIDDGDVLVFASKKTT 482 (618)
Q Consensus 406 ~i~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~--~~l~~~~~~~~vLVF~~~~~~ 482 (618)
+|++|||+... .+..|+.+ |+....|. ...+...+..-+..+.--..+. -.|......|.||||.+.+++
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~GR----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPGR----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecCC----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 99999999633 45555555 55444333 2223333333222222111111 112233467899999999999
Q ss_pred HHHHHHHHHhC----C----CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE--------cC
Q 007090 483 VDEIESQLAQK----G----FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FD 546 (618)
Q Consensus 483 ~~~l~~~L~~~----~----~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~--------~~ 546 (618)
++.++..|.+. + .-+.++||.++.+++.+++..-..|..+|+++|+++++.+.|+|+.+||. |+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999999764 1 13578999999999999999999999999999999999999999999995 44
Q ss_pred C----------CCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 547 I----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 547 ~----------p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
+ |-|-..-.||.||+||.| +|.||++++..+.
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~--pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTG--PGKCYRLYTESAY 392 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCC--CceEEEeeeHHHH
Confidence 3 335667789999999999 8999999998764
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.1e-26 Score=258.72 Aligned_cols=387 Identities=20% Similarity=0.230 Sum_probs=283.4
Q ss_pred ccccCCCHHHHHHHHHhcCeeecc--CCC-----CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cC
Q 007090 194 ASISGMSEQDVMEYKKSLAIRVSG--FDV-----PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL----SG 262 (618)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~~--~~~-----p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~----~~ 262 (618)
+.+.++....|..-|.+..-.+.. ..+ -+....=..++.+...+..+...--..-||-|..||..+. ++
T Consensus 534 p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 534 PKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccC
Confidence 357788888898877655322211 000 0011111123455666666666544568999999999977 33
Q ss_pred --CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 263 --RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 263 --~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|-++||..|.|||-+++-+++..+++ |+.|.|+|||--||+|.++.++.-...+++++..+....+..+
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE 685 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKE 685 (1139)
T ss_pred CcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHH
Confidence 488999999999999998888888754 7889999999999999999999998989999999988888877
Q ss_pred HHHHH---Hc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHH
Q 007090 341 QFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (618)
Q Consensus 341 ~~~~l---~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 416 (618)
+...+ .. ..||||+|.. ++ .+.+.+.+++++||||-|+ |+-.-+.-+..++.+..++-|||||-|.
T Consensus 686 ~~~il~~la~G~vDIvIGTHr----LL-~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPR 755 (1139)
T COG1197 686 QKEILKGLAEGKVDIVIGTHR----LL-SKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPR 755 (1139)
T ss_pred HHHHHHHHhcCCccEEEechH----hh-CCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcc
Confidence 75544 33 4899999963 33 5667788999999999999 4445556667778889999999998776
Q ss_pred HHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC--C
Q 007090 417 VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--G 494 (618)
Q Consensus 417 ~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~--~ 494 (618)
.-.++-.-+++.-.|.. .......|...+...+.. --...+...+. .+|++....|..+.+..++..|+.. .
T Consensus 756 TL~Msm~GiRdlSvI~T--PP~~R~pV~T~V~~~d~~-~ireAI~REl~---RgGQvfYv~NrV~~Ie~~~~~L~~LVPE 829 (1139)
T COG1197 756 TLNMSLSGIRDLSVIAT--PPEDRLPVKTFVSEYDDL-LIREAILRELL---RGGQVFYVHNRVESIEKKAERLRELVPE 829 (1139)
T ss_pred hHHHHHhcchhhhhccC--CCCCCcceEEEEecCChH-HHHHHHHHHHh---cCCEEEEEecchhhHHHHHHHHHHhCCc
Confidence 66666555554333322 222333344444433322 22233333333 4789999999999999999999986 4
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCC-CCHHHHHHHHhhcccCCCCCeEEEE
Q 007090 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGTAYT 573 (618)
Q Consensus 495 ~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p-~~~~~y~Qr~GR~gR~g~~~g~~~~ 573 (618)
.++++.||.|+..+.++++..|.+|+++|||||.+.+.|+|||+++++|..+.. ...++..|.-||+||.. +.+.||.
T Consensus 830 arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~-~~AYAYf 908 (1139)
T COG1197 830 ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN-KQAYAYF 908 (1139)
T ss_pred eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc-ceEEEEE
Confidence 579999999999999999999999999999999999999999999999977654 47889999999999998 5799999
Q ss_pred EecCcc-----HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007090 574 LVTQKE-----ARFAGELVNSLIAAGQNVSMELMDLA 605 (618)
Q Consensus 574 l~~~~d-----~~~~~~i~~~l~~~~~~v~~~l~~~~ 605 (618)
++-+.. +..--..++.+...|.-....|.||.
T Consensus 909 l~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLe 945 (1139)
T COG1197 909 LYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLE 945 (1139)
T ss_pred eecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchh
Confidence 998642 22222333444445555555555543
No 99
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=252.19 Aligned_cols=311 Identities=20% Similarity=0.270 Sum_probs=222.0
Q ss_pred CcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCc
Q 007090 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~ 327 (618)
..++-.+.+..+..++.+|+.|+||||||++ +|.+.|-... .+.|.++=+..|+|..|..++..+..-. |.
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~EM---gv 336 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGY----TKGGKKIGCTQPRRVAAMSVAARVAEEM---GV 336 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhccc----ccCCceEeecCcchHHHHHHHHHHHHHh---Cc
Confidence 4566677888888999999999999999987 8887775443 1234557799999999998876665543 44
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCChHHHHHHHHhcCCCccE
Q 007090 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDRQT 406 (618)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah-~~~~~~~~~~i~~i~~~~~~~~q~ 406 (618)
+.+.-+|..-+.+.+- ....-|-++|.|.|++.+.. ...|.++++||||||| +-+..+..-.+-.-+..++|+.++
T Consensus 337 kLG~eVGYsIRFEdcT--SekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCT--SEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred ccccccceEEEecccc--CcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 4333333333322211 13367889999999998854 4469999999999999 444444444444556677899999
Q ss_pred EEEeccccHHHHHHHHHHcC-CCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcC--CCCCCCcEEEEcCChhHH
Q 007090 407 LLFSATMPRKVEKLAREILS-DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP--GMIDDGDVLVFASKKTTV 483 (618)
Q Consensus 407 i~~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~--~~~~~~~vLVF~~~~~~~ 483 (618)
++.|||+.. .++ ..|+. -|+....+.. ..+...|...++.+.--..+...++ ...+.|.||||...++++
T Consensus 414 lIsSAT~DA--ekF-S~fFDdapIF~iPGRR----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEI 486 (902)
T KOG0923|consen 414 LISSATMDA--EKF-SAFFDDAPIFRIPGRR----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEI 486 (902)
T ss_pred EeeccccCH--HHH-HHhccCCcEEeccCcc----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHH
Confidence 999999964 334 44444 4666554432 2223333333333222233333332 222458999999999999
Q ss_pred HHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC-------
Q 007090 484 DEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------- 547 (618)
Q Consensus 484 ~~l~~~L~~~---------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~------- 547 (618)
+.....|... .+-+++||..++...+..+++.-..|-.+|++||++|++.|.|+||.+||.-+.
T Consensus 487 Et~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsyn 566 (902)
T KOG0923|consen 487 ETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYN 566 (902)
T ss_pred HHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcC
Confidence 8887777643 245889999999999999999999999999999999999999999999995442
Q ss_pred -CC----------CHHHHHHHHhhcccCCCCCeEEEEEecCcc
Q 007090 548 -AR----------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (618)
Q Consensus 548 -p~----------~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d 579 (618)
.. +-..-.||.||+||.| +|.||+||+.+.
T Consensus 567 prtGmesL~v~piSKAsA~QRaGRAGRtg--PGKCfRLYt~~a 607 (902)
T KOG0923|consen 567 PRTGMESLLVTPISKASANQRAGRAGRTG--PGKCFRLYTAWA 607 (902)
T ss_pred CCcCceeEEEeeechhhhhhhccccCCCC--CCceEEeechhh
Confidence 22 3455579999999999 899999999653
No 100
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=5e-27 Score=248.15 Aligned_cols=353 Identities=21% Similarity=0.239 Sum_probs=247.7
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.+|.++|+.++.|+. ++...|+..+||.|||++. +.+|..+...... ...+|||||. .+..||.+++..|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHh
Confidence 357799999999987 5678899999999999873 4444444443211 2448999996 5667999999999
Q ss_pred HhhcCceEEEEECCCCh--------HHHHH-----HHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC
Q 007090 322 AKSHGIRVSAVYGGMSK--------LDQFK-----ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~--------~~~~~-----~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~ 388 (618)
.+ .+++..+++..+. ..... ....+.+|+|+|+..+.-. ...+.-..++|+|+||.|++-+.+
T Consensus 278 ~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 278 WP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred Cc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc
Confidence 87 5677777665442 11111 1123467999999877433 233334568999999999988764
Q ss_pred ChHHHHHHHHhcCCCccEEEEecccc-HHHHHHHHH--------------------------------------------
Q 007090 389 FEPQIRSIVGQIRPDRQTLLFSATMP-RKVEKLARE-------------------------------------------- 423 (618)
Q Consensus 389 ~~~~i~~i~~~~~~~~q~i~~SAT~~-~~~~~l~~~-------------------------------------------- 423 (618)
..+...+..++ -.+.|++|+|+- +++.++..-
T Consensus 354 --s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 34444455553 345577777762 222222111
Q ss_pred -----------------------------------------------------------------------HcCCCeEEE
Q 007090 424 -----------------------------------------------------------------------ILSDPVRVT 432 (618)
Q Consensus 424 -----------------------------------------------------------------------~~~~~~~i~ 432 (618)
.|..|-...
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 111111100
Q ss_pred EcCccccccceeEEEE--EcCCCcccHHHHHHhcCCCCCCC-cEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCCCCHHH
Q 007090 433 VGEVGMANEDITQVVH--VIPSDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQAS 508 (618)
Q Consensus 433 ~~~~~~~~~~i~q~~~--~~~~~~~k~~~l~~~l~~~~~~~-~vLVF~~~~~~~~~l~~~L~-~~~~~~~~l~g~~~~~~ 508 (618)
-.. ....+.-. -....+.|...+..+|..+...| ++|+|..++.+.+.|...|. ..++.++.+.|.++...
T Consensus 511 ~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 511 RRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAAL 585 (923)
T ss_pred Ccc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 000 00000000 00112456777777777665544 89999999999999999999 58999999999999999
Q ss_pred HHHHHHHHhcCCc--eEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCC-eEEEEEecCc---cHHH
Q 007090 509 RMEILQKFKSGVY--HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK---EARF 582 (618)
Q Consensus 509 r~~~~~~F~~g~~--~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~-g~~~~l~~~~---d~~~ 582 (618)
|..++..|+++.. -+|++|.+++-|+|+.+++.||.|||.|||+.-.|..-|+.|.|++. -.+|+|++.. +.-+
T Consensus 586 R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY 665 (923)
T KOG0387|consen 586 RQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY 665 (923)
T ss_pred hhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH
Confidence 9999999998753 36889999999999999999999999999999999999999999654 5577888874 6777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhhccccchhcc
Q 007090 583 AGELVNSLIAAGQNVSMELMDLAMKVILLDIAVL 616 (618)
Q Consensus 583 ~~~i~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~ 616 (618)
..+|.+..-.....-.++...+.....+.++|.+
T Consensus 666 ~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl 699 (923)
T KOG0387|consen 666 HRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSL 699 (923)
T ss_pred HHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCC
Confidence 7788777777666677777788777777777654
No 101
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=5.6e-27 Score=256.74 Aligned_cols=341 Identities=20% Similarity=0.244 Sum_probs=245.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccC---CCCeEEEEcc
Q 007090 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAP 306 (618)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~vLIl~P 306 (618)
.+|..-..++. |...++++|....+..+.+ .++++|||||+|||..+++.+|+.+-........ ..-++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 34444444433 4566999999999998876 6899999999999999999999888655432211 2347899999
Q ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc---cccCceeEEEecchhh
Q 007090 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADR 383 (618)
Q Consensus 307 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~---~~l~~~~~iIvDEah~ 383 (618)
..+|++.|...+.+....+|++|.-..|......+ -..+..||||||+..- .+.++. ...+-+.++|+||.|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhh---hhhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999998664332 1235899999999973 333331 2234578899999996
Q ss_pred hhcCCChHHHHHHHHhcC-------CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC--c
Q 007090 384 MFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD--A 454 (618)
Q Consensus 384 ~~~~~~~~~i~~i~~~~~-------~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~--~ 454 (618)
+-+ +.++.+.++..+.. ....++++|||+|+- ...+.-+..++--+........+..+.|.+.-+... .
T Consensus 449 LhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 449 LHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred ccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 543 34666666654432 356899999999864 333333333443344444455555666766655432 2
Q ss_pred ccHH----HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHh-------------------------------------C
Q 007090 455 EKLP----WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ-------------------------------------K 493 (618)
Q Consensus 455 ~k~~----~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~-------------------------------------~ 493 (618)
.++. ...+.+.+...+++||||+.++++.-+.|+.++. .
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 2222 2344444444568999999999998888877763 1
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEE----EcCCC------CCHHHHHHHHhhccc
Q 007090 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFDIA------RDMDMHVHRIGRTGR 563 (618)
Q Consensus 494 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI----~~~~p------~~~~~y~Qr~GR~gR 563 (618)
.+.++.+|.+|+..+|..+...|..|.+.|||+|..+++|+|+|+-..+| -|++- .++.+..||.||+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 46689999999999999999999999999999999999999999754444 35543 368999999999999
Q ss_pred CC-CCCeEEEEEecCcc
Q 007090 564 AG-DKDGTAYTLVTQKE 579 (618)
Q Consensus 564 ~g-~~~g~~~~l~~~~d 579 (618)
.+ +..|..++.....+
T Consensus 687 p~~D~~gegiiit~~se 703 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSE 703 (1674)
T ss_pred CccCcCCceeeccCchH
Confidence 98 44455555444433
No 102
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.5e-26 Score=248.25 Aligned_cols=287 Identities=20% Similarity=0.277 Sum_probs=192.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---H
Q 007090 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---F 342 (618)
Q Consensus 266 l~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~ 342 (618)
|+.|+||||||.+|+.. +.+++.. +.++||++|+++|+.|+++.+++.. +..+..++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 46899999999998654 4444332 6679999999999999999888754 5678888888766543 3
Q ss_pred HHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC---ChHHHH--HHHHhcCCCccEEEEeccccHH
Q 007090 343 KELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG---FEPQIR--SIVGQIRPDRQTLLFSATMPRK 416 (618)
Q Consensus 343 ~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~---~~~~i~--~i~~~~~~~~q~i~~SAT~~~~ 416 (618)
..+.. .++|||+|+..+. ..+.++++|||||+|...-++ ...+.+ .++.....+.++|++|||++.+
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 34443 4799999998663 257789999999999765332 111111 2233334678999999998755
Q ss_pred HHHHHHHHcCCCeEEEEcCc--cccccceeEEEEEcCCCc---ccHHHHHHhcCCCCC-CCcEEEEcCChhH--------
Q 007090 417 VEKLAREILSDPVRVTVGEV--GMANEDITQVVHVIPSDA---EKLPWLLEKLPGMID-DGDVLVFASKKTT-------- 482 (618)
Q Consensus 417 ~~~l~~~~~~~~~~i~~~~~--~~~~~~i~q~~~~~~~~~---~k~~~l~~~l~~~~~-~~~vLVF~~~~~~-------- 482 (618)
....+. -+....+..... +.....+ .+.-+.... .-...+++.+...+. ++++|||+|++..
T Consensus 143 s~~~~~--~g~~~~~~l~~r~~~~~~p~v--~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~ 218 (505)
T TIGR00595 143 SYHNAK--QKAYRLLVLTRRVSGRKPPEV--KLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRS 218 (505)
T ss_pred HHHHHh--cCCeEEeechhhhcCCCCCeE--EEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhh
Confidence 333321 121111111110 1111111 111111111 011234444444433 4589999876543
Q ss_pred ----------------------------------------------------HHHHHHHHHhC--CCcEEEEeCCCCHHH
Q 007090 483 ----------------------------------------------------VDEIESQLAQK--GFKAAALHGDKDQAS 508 (618)
Q Consensus 483 ----------------------------------------------------~~~l~~~L~~~--~~~~~~l~g~~~~~~ 508 (618)
.+++.+.|++. +.++..+|+++++..
T Consensus 219 Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 219 CGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRK 298 (505)
T ss_pred CcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCc
Confidence 47778888776 788999999998765
Q ss_pred H--HHHHHHHhcCCceEEEecccccccCCcCCccEEE--EcCCCCC----------HHHHHHHHhhcccCCCCCeEEEEE
Q 007090 509 R--MEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV--NFDIARD----------MDMHVHRIGRTGRAGDKDGTAYTL 574 (618)
Q Consensus 509 r--~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI--~~~~p~~----------~~~y~Qr~GR~gR~g~~~g~~~~l 574 (618)
+ ..+++.|++|+.+|||+|+++++|+|+|+|+.|+ ++|...+ .+.|+|++||+||.+ +.|.++..
T Consensus 299 ~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~-~~g~viiq 377 (505)
T TIGR00595 299 GAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE-DPGQVIIQ 377 (505)
T ss_pred cHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC-CCCEEEEE
Confidence 5 8999999999999999999999999999999986 4443222 467899999999988 57888865
Q ss_pred e
Q 007090 575 V 575 (618)
Q Consensus 575 ~ 575 (618)
.
T Consensus 378 t 378 (505)
T TIGR00595 378 T 378 (505)
T ss_pred e
Confidence 4
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-26 Score=255.40 Aligned_cols=318 Identities=17% Similarity=0.205 Sum_probs=228.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+++|..+--.+ +..-|..++||.|||+++++|++.+.+. |..|.||+|++.||.|..+++..+...+|
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4566666554444 4456899999999999999999887754 55599999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc-ccc-----cCceeEEEecchhhhhcCC-----------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALT-----MSRVTYLVLDEADRMFDLG----------- 388 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~-~~~-----l~~~~~iIvDEah~~~~~~----------- 388 (618)
+++.++.++.+...... .-++||+++||+.| .+++..+ ... .+.+.++||||||.|+-..
T Consensus 152 lsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 99999999887643322 12699999999999 7887654 222 3678999999999874200
Q ss_pred -----ChHHHHHHHHhcC-------------------CC-----------------------------------------
Q 007090 389 -----FEPQIRSIVGQIR-------------------PD----------------------------------------- 403 (618)
Q Consensus 389 -----~~~~i~~i~~~~~-------------------~~----------------------------------------- 403 (618)
....+..++..+. ..
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 0111111111110 00
Q ss_pred ---------------------------------------------------------------------------ccEEE
Q 007090 404 ---------------------------------------------------------------------------RQTLL 408 (618)
Q Consensus 404 ---------------------------------------------------------------------------~q~i~ 408 (618)
.++.+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 13334
Q ss_pred EeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCC-CcEEEEcCChhHHHHHH
Q 007090 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIE 487 (618)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~-~~vLVF~~~~~~~~~l~ 487 (618)
||+|......++...|--+.+.|. ..... ......-..+.+...|+..+++.+...... .+|||||++...++.++
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IP-Tnkp~--~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVP-TNRPM--VRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECC-CCCCc--cceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 444444433333333322111111 11110 111111122334567888888877655444 48999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcC------------------------------
Q 007090 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK------------------------------ 537 (618)
Q Consensus 488 ~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~------------------------------ 537 (618)
.+|...|+++..+|+..++.++..+...|+.|. |+|||++|+||+||.
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 999999999999997
Q ss_pred -------CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHH
Q 007090 538 -------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (618)
Q Consensus 538 -------~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~ 582 (618)
|-=+||--..+.|.---.|-.||+||.| .+|.+..|+|-.|.-+
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGss~f~lSlED~L~ 595 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG-DAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCC-CCCceeEEEEeCcHHH
Confidence 2237888888888888889999999999 5899999999887533
No 104
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=239.34 Aligned_cols=308 Identities=20% Similarity=0.214 Sum_probs=212.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH-hhcCc
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGI 327 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~-~~~~~ 327 (618)
..++.+.+..|..++-+++.++||||||++ +|.+.+.-.. .++..+-+..|+|..|..++..+..-. ..+|-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~QyL~edGY-----~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQYLYEDGY-----ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHHHHhccc-----ccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 456667777788899999999999999987 6655444322 223456688999999999887766543 22344
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-hhcCCChHHHHHHHHhcCCCccE
Q 007090 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQIRPDRQT 406 (618)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~-~~~~~~~~~i~~i~~~~~~~~q~ 406 (618)
.|++.+.....+. ...-|-++|.|.|++..-.+. .|.++++||+||||. -++.+..-.+.+..-.-+.+.++
T Consensus 431 ~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTS------EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred ccceEEEeeecCC------CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 4444443333221 246788999999998764444 588999999999994 44433333333333334568899
Q ss_pred EEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcC--CCCCCCcEEEEcCChhHHH
Q 007090 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP--GMIDDGDVLVFASKKTTVD 484 (618)
Q Consensus 407 i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~--~~~~~~~vLVF~~~~~~~~ 484 (618)
|++|||+. .+.+..-|.+.|.....+.. ..+...+...+-.+.--..+-+.+. .....|.+|||.+.+++++
T Consensus 504 iVtSATm~--a~kf~nfFgn~p~f~IpGRT----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE 577 (1042)
T KOG0924|consen 504 IVTSATMD--AQKFSNFFGNCPQFTIPGRT----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIE 577 (1042)
T ss_pred EEeecccc--HHHHHHHhCCCceeeecCCc----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchh
Confidence 99999995 45666555545655444432 1223333322222222222222222 1224588999999999877
Q ss_pred HHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC-------
Q 007090 485 EIESQLAQK----------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------- 547 (618)
Q Consensus 485 ~l~~~L~~~----------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~------- 547 (618)
-.+..++.. ++.+..|++.+++.-+.++++.-..|..+|+|||++|++.|.|+++.+||..+.
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecc
Confidence 666665532 678999999999999999999889999999999999999999999999996442
Q ss_pred -----------CCCHHHHHHHHhhcccCCCCCeEEEEEecCc
Q 007090 548 -----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (618)
Q Consensus 548 -----------p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~ 578 (618)
|-+-..-.||.||+||.| +|+||++|+..
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QRaGRAGRt~--pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQRAGRAGRTG--PGTCYRLYTED 697 (1042)
T ss_pred cccccceeEEEechhccchhhccccCCCC--Ccceeeehhhh
Confidence 224455579999999999 89999999973
No 105
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=6.7e-26 Score=242.97 Aligned_cols=311 Identities=21% Similarity=0.219 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|..+|++|+-++..|..+++.|+|.+|||+++-.++... ..++.++++..|-++|.+|-++.++......
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala--------q~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA--------QKHMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH--------HhhccceEecchhhhhccchHHHHHHhcccc
Confidence 47899999999999999999999999999999765554332 2347789999999999999988888765533
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q 405 (618)
| .+.|.... ...+.++|+|.+.|..++-+....++++++|||||+|.+-+...+-.+..++-.+++..+
T Consensus 368 g----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 G----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred c----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 3 56665533 345889999999999999888888999999999999999888777778899999999999
Q ss_pred EEEEeccccHHHHHHHHHHcCCC-eEEEEcCccccccc-------------------------ee---------------
Q 007090 406 TLLFSATMPRKVEKLAREILSDP-VRVTVGEVGMANED-------------------------IT--------------- 444 (618)
Q Consensus 406 ~i~~SAT~~~~~~~l~~~~~~~~-~~i~~~~~~~~~~~-------------------------i~--------------- 444 (618)
+|++|||.|+.. +++.|..+-. -.+++......+.. ++
T Consensus 437 ~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 437 FILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 999999998764 4666654321 00111000000000 00
Q ss_pred -----------------EEEEEcCC-------Ccc---cHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC----
Q 007090 445 -----------------QVVHVIPS-------DAE---KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---- 493 (618)
Q Consensus 445 -----------------q~~~~~~~-------~~~---k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~---- 493 (618)
+......+ ... .+..++..|... ..-+++|||-++..|++.+.+|...
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCccc
Confidence 00000000 000 122334444321 2248999999999999999998752
Q ss_pred -----------------------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCC
Q 007090 494 -----------------------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (618)
Q Consensus 494 -----------------------------------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~ 538 (618)
...++++||++-+--++-+.-.|..|-++||+||..++.|+|.|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 123789999999999999999999999999999999999999996
Q ss_pred ccEEEEcCCCC---------CHHHHHHHHhhcccCC-CCCeEEEEEecCc
Q 007090 539 IKSVVNFDIAR---------DMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (618)
Q Consensus 539 v~~VI~~~~p~---------~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~ 578 (618)
++||+-.... +|..|.|++|||||.| +.+|+++.+....
T Consensus 675 -RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 675 -RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred -eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 6666544332 5899999999999999 7789988887654
No 106
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.94 E-value=7.8e-27 Score=256.42 Aligned_cols=375 Identities=18% Similarity=0.301 Sum_probs=246.7
Q ss_pred CCcccCccCCccccCCCHHHHHHHHHhcCeee---ccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh
Q 007090 184 PFNKDFYQDSASISGMSEQDVMEYKKSLAIRV---SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL 260 (618)
Q Consensus 184 ~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~ 260 (618)
|+.-+.|.....|..+...++..+...-+... .+...-++...|..+...+..+. | ..|+.+|..+++|++
T Consensus 310 pY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LRdyQLeGlNWl~ 383 (1373)
T KOG0384|consen 310 PYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG-----G-NELRDYQLEGLNWLL 383 (1373)
T ss_pred CcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc-----c-chhhhhhcccchhHH
Confidence 55556676666677766777776665432111 11111112223333333332222 2 679999999999987
Q ss_pred ----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCC
Q 007090 261 ----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (618)
Q Consensus 261 ----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~ 336 (618)
.+.++|+..++|.|||++. +.+|.+++... .-.|| .|||+|...+. .|..++..++ .+++++++|..
T Consensus 384 ~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~---~~~gp-flvvvplst~~-~W~~ef~~w~---~mn~i~y~g~~ 454 (1373)
T KOG0384|consen 384 YSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSL---QIHGP-FLVVVPLSTIT-AWEREFETWT---DMNVIVYHGNL 454 (1373)
T ss_pred HHHHhcccceehhhcCCCcchHH-HHHHHHHHHhh---hccCC-eEEEeehhhhH-HHHHHHHHHh---hhceeeeecch
Confidence 5689999999999999863 55566665442 12366 58999986665 5899999997 68888888887
Q ss_pred ChHHHHHHHH----c-----CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEE
Q 007090 337 SKLDQFKELK----A-----GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTL 407 (618)
Q Consensus 337 ~~~~~~~~l~----~-----~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i 407 (618)
...+.++... . ..+++++|++.++.--. .+.--.+.+++|||||++.+.. ..+...+..++.. ..+
T Consensus 455 ~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~~-~rl 529 (1373)
T KOG0384|consen 455 ESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE--SKLYESLNQFKMN-HRL 529 (1373)
T ss_pred hHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchH--HHHHHHHHHhccc-cee
Confidence 7766655432 1 27899999988764321 1122246789999999987542 3333344444333 346
Q ss_pred EEecccc-HHHHHHH-----------------------------------------------------------------
Q 007090 408 LFSATMP-RKVEKLA----------------------------------------------------------------- 421 (618)
Q Consensus 408 ~~SAT~~-~~~~~l~----------------------------------------------------------------- 421 (618)
++|+|+- +++.+|.
T Consensus 530 litgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels 609 (1373)
T KOG0384|consen 530 LITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELS 609 (1373)
T ss_pred eecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehh
Confidence 6667752 2222221
Q ss_pred ------------------------------------HHHcCCCeEEEEcCccccccceeE-E----EEEcCCCcccHHHH
Q 007090 422 ------------------------------------REILSDPVRVTVGEVGMANEDITQ-V----VHVIPSDAEKLPWL 460 (618)
Q Consensus 422 ------------------------------------~~~~~~~~~i~~~~~~~~~~~i~q-~----~~~~~~~~~k~~~l 460 (618)
+..|..|..+....... ...+.. . ...+-..+.|+..|
T Consensus 610 ~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~-~~~~~~~~~d~~L~~lI~sSGKlVLL 688 (1373)
T KOG0384|consen 610 DLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKI-LGDFRDKMRDEALQALIQSSGKLVLL 688 (1373)
T ss_pred HHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHH-HHhhhhcchHHHHHHHHHhcCcEEeH
Confidence 11111121111100000 000000 0 00000012233333
Q ss_pred HHhcCCCCCC-CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc---CCceEEEecccccccCCc
Q 007090 461 LEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVYHVLIATDVAARGLDI 536 (618)
Q Consensus 461 ~~~l~~~~~~-~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~---g~~~VLVaT~~~~~Gldi 536 (618)
-.+|..+... .+||||.+...+.+.|++||...+|++-.|.|.....-|..++.+|.. ..+.+|+||.+++-|||+
T Consensus 689 DKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 689 DKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred HHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc
Confidence 3333333333 589999999999999999999999999999999999999999999975 467899999999999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHHhhcccCCCC-CeEEEEEecCcc
Q 007090 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKE 579 (618)
Q Consensus 537 ~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~-~g~~~~l~~~~d 579 (618)
..+++||+||..|||+.-+|+..||+|.|++ .-.+|+|+|+.-
T Consensus 769 atADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 769 ATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999954 467999999863
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=3.1e-25 Score=256.89 Aligned_cols=303 Identities=17% Similarity=0.219 Sum_probs=198.3
Q ss_pred CCCcHHHHHHHHHHh----c-CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----S-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~-~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
..|+++|..|+..+. . .+.++++++||+|||.+++ .++..++.. ...++||||+|+++|+.|+.+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998765 2 4689999999999998643 344444432 2356899999999999999999888
Q ss_pred HHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-----ccccCceeEEEecchhhhhcC--------
Q 007090 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDL-------- 387 (618)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-----~~~l~~~~~iIvDEah~~~~~-------- 387 (618)
+..........+++....... .......|+|||+++|...+... ...+..+++|||||||+....
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 732212111111111100111 01235799999999998765321 135678999999999985310
Q ss_pred -------CChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcC----ccccc-----cceeEEE----
Q 007090 388 -------GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE----VGMAN-----EDITQVV---- 447 (618)
Q Consensus 388 -------~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~----~~~~~-----~~i~q~~---- 447 (618)
++...++.++.++. ...|+|||||.... ..+++.|+..+.-. .+... ..+...+
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t----~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHT----TEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccch----hHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 11356677777653 46799999997533 22333433211100 00000 0000000
Q ss_pred ---------------------EEcCCC--------------cccH----HHHHHhcCCCCCCCcEEEEcCChhHHHHHHH
Q 007090 448 ---------------------HVIPSD--------------AEKL----PWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (618)
Q Consensus 448 ---------------------~~~~~~--------------~~k~----~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~ 488 (618)
...+.. .... ..+...+... ..+++||||.+..+|+.+++
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~-~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT-GEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc-CCCcEEEEEcCHHHHHHHHH
Confidence 000000 0000 1122222221 24799999999999999999
Q ss_pred HHHhC------C---CcEEEEeCCCCHHHHHHHHHHHhcCCc-eEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHH
Q 007090 489 QLAQK------G---FKAAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558 (618)
Q Consensus 489 ~L~~~------~---~~~~~l~g~~~~~~r~~~~~~F~~g~~-~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~ 558 (618)
.|.+. + ..+..+||..+ ++..++..|+++.. +|||+++++.+|+|+|.|.+||++.++.|...|+||+
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmI 794 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQML 794 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHH
Confidence 88653 2 24667999876 46789999999887 6899999999999999999999999999999999999
Q ss_pred hhcccCC
Q 007090 559 GRTGRAG 565 (618)
Q Consensus 559 GR~gR~g 565 (618)
||+.|..
T Consensus 795 GRgtR~~ 801 (1123)
T PRK11448 795 GRATRLC 801 (1123)
T ss_pred hhhccCC
Confidence 9999975
No 108
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.9e-24 Score=208.92 Aligned_cols=315 Identities=19% Similarity=0.230 Sum_probs=218.7
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.+|+|.|+.+-..+. +..+.|++|-||+|||.. +.+.+..++++ |..+.|..|+...|..++.+++.-
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh
Confidence 479999998876655 668999999999999984 56667777665 788999999999999999888876
Q ss_pred HhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHH-HHHHhc
Q 007090 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQI 400 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~-~i~~~~ 400 (618)
.. +..+.+++|+.... ++ +.++|||...|+++.. .++++||||+|.+--.. ...+. .+-+..
T Consensus 168 F~--~~~I~~Lyg~S~~~------fr-~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ar 230 (441)
T COG4098 168 FS--NCDIDLLYGDSDSY------FR-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKAR 230 (441)
T ss_pred hc--cCCeeeEecCCchh------cc-ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhh
Confidence 54 57788888887653 22 7899999999988754 57899999999864332 23333 344444
Q ss_pred CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccH-----H-HHHHhcCCCCC-CCcE
Q 007090 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----P-WLLEKLPGMID-DGDV 473 (618)
Q Consensus 401 ~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~-----~-~l~~~l~~~~~-~~~v 473 (618)
+...-+|++|||++..++.-+..- +...+.+.......+-+.-.+..+..-..++ . .|...|..... +-++
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 567789999999998766544332 2222222221111222222233332211111 1 33444433322 4589
Q ss_pred EEEcCChhHHHHHHHHHHhC-C-CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCC--C
Q 007090 474 LVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--R 549 (618)
Q Consensus 474 LVF~~~~~~~~~l~~~L~~~-~-~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p--~ 549 (618)
|||+++....+.++..|+.. + ...+.+|+.. ..|.+.++.|++|+..+||+|.+++||+.+|+|+.+|.-... .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 99999999999999999543 3 3457888754 468899999999999999999999999999999988865443 5
Q ss_pred CHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHH
Q 007090 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (618)
Q Consensus 550 ~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~ 589 (618)
+-+..+|..||+||.-..+.--+.||...-..-+.+..+.
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 6788999999999987444334444544433333333343
No 109
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=235.51 Aligned_cols=319 Identities=20% Similarity=0.229 Sum_probs=234.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|.|+|.+++..+-++..+++.|.|.+|||.++-.++...+- ++-+|++..|-++|.+|-++++..-.+..
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr--------~kQRVIYTSPIKALSNQKYREl~~EF~DV 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR--------EKQRVIYTSPIKALSNQKYRELLEEFKDV 199 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH--------hcCeEEeeChhhhhcchhHHHHHHHhccc
Confidence 4689999999999999999999999999999987666655542 35679999999999999999988776543
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q 405 (618)
+...|.... ...+-.+|+|.+.|..++-++.--++.+.+||+||+|.|-+...+-.+..-+-.+++..+
T Consensus 200 ----GLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 200 ----GLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ----ceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 445555433 234778999999999999887777889999999999999988766666666777889999
Q ss_pred EEEEeccccHHHHHHHHHHcC---CCeEEEEcCccccc--cc-----eeEEEEEcCCC----cccHHHHHHhcCCCC---
Q 007090 406 TLLFSATMPRKVEKLAREILS---DPVRVTVGEVGMAN--ED-----ITQVVHVIPSD----AEKLPWLLEKLPGMI--- 468 (618)
Q Consensus 406 ~i~~SAT~~~~~~~l~~~~~~---~~~~i~~~~~~~~~--~~-----i~q~~~~~~~~----~~k~~~l~~~l~~~~--- 468 (618)
.+++|||+|+. .+++.|.++ .|..+.+.....++ .. -.-.+.+++.. .+.+......|....
T Consensus 269 ~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 269 FVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred EEEEeccCCCH-HHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 99999999976 457777653 45544433211111 00 00111111110 011111111111100
Q ss_pred ----------------------------------CCCcEEEEcCChhHHHHHHHHHHhC---------------------
Q 007090 469 ----------------------------------DDGDVLVFASKKTTVDEIESQLAQK--------------------- 493 (618)
Q Consensus 469 ----------------------------------~~~~vLVF~~~~~~~~~l~~~L~~~--------------------- 493 (618)
.-.+||||+-++.+|+.++-.+.+.
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~ 427 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQ 427 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHh
Confidence 1247999999999999999887652
Q ss_pred ------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC--------
Q 007090 494 ------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-------- 547 (618)
Q Consensus 494 ------------------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~-------- 547 (618)
...++.+||++-+--++-+.-.|..|-++||.||..++.|||.|. ++|++-..
T Consensus 428 LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~~f 506 (1041)
T KOG0948|consen 428 LSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDGKKF 506 (1041)
T ss_pred cChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCCcce
Confidence 123789999999998888999999999999999999999999996 66664332
Q ss_pred -CCCHHHHHHHHhhcccCC-CCCeEEEEEecCc-cHHHHHH
Q 007090 548 -ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK-EARFAGE 585 (618)
Q Consensus 548 -p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~-d~~~~~~ 585 (618)
+-+...|+|+.||+||.| +..|.|+.+++.. +...+.+
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHH
Confidence 225779999999999999 6679999999864 4444433
No 110
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.93 E-value=3.1e-25 Score=222.70 Aligned_cols=360 Identities=19% Similarity=0.273 Sum_probs=236.3
Q ss_pred cCCCcccCccCCccccCCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc
Q 007090 182 YEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS 261 (618)
Q Consensus 182 ~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~ 261 (618)
|+...-..|..++++.++ |..+.+...........|..+. ..+-|+|.+.+.|+..
T Consensus 143 ~er~~~rl~eh~pE~~~v----~~dlde~~p~i~e~aeqP~dli--------------------i~LL~fQkE~l~Wl~~ 198 (791)
T KOG1002|consen 143 YERNTLRLYEHHPELRNV----FTDLDEANPVIAERAEQPDDLI--------------------IPLLPFQKEGLAWLTS 198 (791)
T ss_pred cchhhhhhhhcCchhhhh----hhhhhhcCchhhhcccCcccce--------------------ecchhhhHHHHHHHHH
Confidence 333334456667666655 5566666555555544554433 4677999999999875
Q ss_pred C-----CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCC
Q 007090 262 G-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (618)
Q Consensus 262 ~-----~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~ 336 (618)
. ...|+..++|.|||++.+..+|..+ .+...||++|+.+|. ||.+++.++.. |-.-+++|.|.
T Consensus 199 QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAlm-QW~nEI~~~T~--gslkv~~YhG~ 266 (791)
T KOG1002|consen 199 QEESSVAGGILADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVALM-QWKNEIERHTS--GSLKVYIYHGA 266 (791)
T ss_pred hhhhhhccceehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHHH-HHHHHHHHhcc--CceEEEEEecc
Confidence 4 4679999999999998766665532 233389999998877 89999999987 66667777787
Q ss_pred ChHHHHHHHHcCCcEEEeChHHHHHHHHccccc-------------cC--ceeEEEecchhhhhcCCCh-----------
Q 007090 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-------------MS--RVTYLVLDEADRMFDLGFE----------- 390 (618)
Q Consensus 337 ~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~-------------l~--~~~~iIvDEah~~~~~~~~----------- 390 (618)
.+...++++. ++|++++|+..+...+++.... |. .+..||+||||.+.+....
T Consensus 267 ~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt 345 (791)
T KOG1002|consen 267 KRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETT 345 (791)
T ss_pred cccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhh
Confidence 7777777765 5999999999998887653221 22 2567999999987543211
Q ss_pred -----------H---HHHHHHHhcC--C-------------------------------CccEEEEeccccHHHHHH---
Q 007090 391 -----------P---QIRSIVGQIR--P-------------------------------DRQTLLFSATMPRKVEKL--- 420 (618)
Q Consensus 391 -----------~---~i~~i~~~~~--~-------------------------------~~q~i~~SAT~~~~~~~l--- 420 (618)
+ .+..+++.++ | ..++++|.+.++..++.+
T Consensus 346 ~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~e 425 (791)
T KOG1002|consen 346 YRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVE 425 (791)
T ss_pred hhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhccc
Confidence 1 1112222111 1 013333333332111110
Q ss_pred --------------------------------------------------------------------------------
Q 007090 421 -------------------------------------------------------------------------------- 420 (618)
Q Consensus 421 -------------------------------------------------------------------------------- 420 (618)
T Consensus 426 GpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF 505 (791)
T KOG1002|consen 426 GPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIF 505 (791)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHH
Confidence
Q ss_pred -----HHHHcCCCeEEEEcCc-cccc------------------------------------------cceeEEEEEcC-
Q 007090 421 -----AREILSDPVRVTVGEV-GMAN------------------------------------------EDITQVVHVIP- 451 (618)
Q Consensus 421 -----~~~~~~~~~~i~~~~~-~~~~------------------------------------------~~i~q~~~~~~- 451 (618)
+++....|..+..... .... .++......+.
T Consensus 506 ~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 506 TLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred HHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 1111111222221000 0000 00000000000
Q ss_pred -------------------------------CCcccHHHHHHhcCCCCC---CCcEEEEcCChhHHHHHHHHHHhCCCcE
Q 007090 452 -------------------------------SDAEKLPWLLEKLPGMID---DGDVLVFASKKTTVDEIESQLAQKGFKA 497 (618)
Q Consensus 452 -------------------------------~~~~k~~~l~~~l~~~~~---~~~vLVF~~~~~~~~~l~~~L~~~~~~~ 497 (618)
..+.|+..|.+.|.-... ..+.|||.+.....+.+...|.+.|+++
T Consensus 586 siDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfsc 665 (791)
T KOG1002|consen 586 SIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSC 665 (791)
T ss_pred cccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceE
Confidence 124466666666543332 2378999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCC-ce-EEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCC-eEEEEE
Q 007090 498 AALHGDKDQASRMEILQKFKSGV-YH-VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTL 574 (618)
Q Consensus 498 ~~l~g~~~~~~r~~~~~~F~~g~-~~-VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~-g~~~~l 574 (618)
+-+.|+|++..|..+++.|++.. +. +|++-.+++..+|+..+.+|+++|++||+..-+|...|.+|.|+.. -.+++|
T Consensus 666 VkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf 745 (791)
T KOG1002|consen 666 VKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRF 745 (791)
T ss_pred EEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEe
Confidence 99999999999999999999863 44 4667789999999999999999999999999999999999999654 445555
Q ss_pred ecCc
Q 007090 575 VTQK 578 (618)
Q Consensus 575 ~~~~ 578 (618)
+..+
T Consensus 746 ~iEn 749 (791)
T KOG1002|consen 746 CIEN 749 (791)
T ss_pred ehhc
Confidence 5544
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=3e-25 Score=239.87 Aligned_cols=343 Identities=21% Similarity=0.268 Sum_probs=246.2
Q ss_pred CCCHHHHH-HHHHCCCCCCcHHHHHHH--HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc
Q 007090 231 GFSTQLMH-AISKQGYEKPTSIQCQAL--PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (618)
Q Consensus 231 ~l~~~l~~-~l~~~~~~~~~~~Q~~~i--~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt 307 (618)
.+++.+.+ .....|+.++..+|..++ |.++.++++|+..||+.|||+++-+.++..++.. ...++.++|.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~ 278 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPY 278 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecce
Confidence 34444444 445668899999999998 6688999999999999999999999999888764 4558999999
Q ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhh
Q 007090 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 308 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~~~~iIvDEah~~~ 385 (618)
...+..-...+..+....|+.+...+|...... .++.-++.|||-++-..+++. ..-.+..+++|||||.|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 988888888888999899999988886655433 233478999999987666543 22246678999999999999
Q ss_pred cCCChHHHHHHHHhc-----CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcC---------ccccccce------eE
Q 007090 386 DLGFEPQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE---------VGMANEDI------TQ 445 (618)
Q Consensus 386 ~~~~~~~i~~i~~~~-----~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~---------~~~~~~~i------~q 445 (618)
+.+.+..++.++.++ ....|+|+||||+|+. .++..++..-+...-.. .+...... +.
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHH
Confidence 988888887776654 3346799999999864 23333333222111000 00000000 00
Q ss_pred EE----EEcCCCcccHHHHHHhcCCCCCCC-cEEEEcCChhHHHHHHHHHHhC---------------------------
Q 007090 446 VV----HVIPSDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK--------------------------- 493 (618)
Q Consensus 446 ~~----~~~~~~~~k~~~l~~~l~~~~~~~-~vLVF~~~~~~~~~l~~~L~~~--------------------------- 493 (618)
.. ......+. ..+..+..+....+ .+||||+++..|+.++..+...
T Consensus 433 ia~l~~~~~g~~dp--D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~ 510 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDP--DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIP 510 (1008)
T ss_pred hhhhhhhhcccCCC--cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCC
Confidence 00 00000000 12222222233344 5999999999999888665431
Q ss_pred -----------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE---cC-CCCCHHHHHHHH
Q 007090 494 -----------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN---FD-IARDMDMHVHRI 558 (618)
Q Consensus 494 -----------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~---~~-~p~~~~~y~Qr~ 558 (618)
.+.+..+|.+++..+|..+...|++|...|++||+.++.|+|+|..+.+|- ++ .....-.|.||+
T Consensus 511 ~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 511 GILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred cccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence 345889999999999999999999999999999999999999998666663 22 334678999999
Q ss_pred hhcccCC-CCCeEEEEEecCccHHHHHHHHH
Q 007090 559 GRTGRAG-DKDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 559 GR~gR~g-~~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
|||||+| ...|.++.++.+.+......++.
T Consensus 591 GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 591 GRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 9999999 55699999999988766655544
No 112
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.2e-24 Score=242.65 Aligned_cols=312 Identities=21% Similarity=0.249 Sum_probs=231.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|.++|++++-++..+..+++|||||+|||++.-.++...+. +|.+++++.|.++|.+|.+..+.......
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~--------~~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR--------DGQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH--------cCCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 4789999999999999999999999999999976655544432 36669999999999999998888765533
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q 405 (618)
.-.+..+.|.... ..++.++|+|.+.|.+++.++...+..+..||+||+|.|-+..-+..++.++-.++...|
T Consensus 190 ~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 2234555565443 446899999999999999888888999999999999999999888888899999999999
Q ss_pred EEEEeccccHHHHHHHHHHc---CCCeEEEEcCccccccceeEE-------EEEcCCCc---------------------
Q 007090 406 TLLFSATMPRKVEKLAREIL---SDPVRVTVGEVGMANEDITQV-------VHVIPSDA--------------------- 454 (618)
Q Consensus 406 ~i~~SAT~~~~~~~l~~~~~---~~~~~i~~~~~~~~~~~i~q~-------~~~~~~~~--------------------- 454 (618)
+++||||.|+. .++..|+. ..|..+..... ......+. +..++...
T Consensus 263 ~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~--RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 263 FVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH--RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred EEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC--CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 99999999865 45666654 22333322211 11111111 11111100
Q ss_pred -------------------------ccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC----------------
Q 007090 455 -------------------------EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------- 493 (618)
Q Consensus 455 -------------------------~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~---------------- 493 (618)
.+...++..+... ..-++++||-++..|+..+..+...
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 0001122222111 1237999999999998888777531
Q ss_pred ------------CC-------------cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC-
Q 007090 494 ------------GF-------------KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI- 547 (618)
Q Consensus 494 ------------~~-------------~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~- 547 (618)
++ .++.+|+++=+.-+..+...|..|-++||++|.+++.|+|.|. ++|+++..
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~ 497 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLS 497 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeE
Confidence 11 2568999999999999999999999999999999999999996 56665443
Q ss_pred --------CCCHHHHHHHHhhcccCC-CCCeEEEEEecC
Q 007090 548 --------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQ 577 (618)
Q Consensus 548 --------p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~ 577 (618)
+-++..|.|+.||+||.| +..|+++++-.+
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 347899999999999999 667999988443
No 113
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=1.5e-24 Score=239.35 Aligned_cols=314 Identities=21% Similarity=0.262 Sum_probs=230.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH-hhcCc
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGI 327 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~-~~~~~ 327 (618)
+..+.+.+..+.+++.+++.|+||+|||++.---+|.+..... ...++++..|+|-.|..+++++..-- ...|-
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 4678888999999999999999999999873322344433332 45668999999999998888877543 33466
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh-hhhcCCChHHHHHHHHhcCCCccE
Q 007090 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDRQT 406 (618)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah-~~~~~~~~~~i~~i~~~~~~~~q~ 406 (618)
.|++.++..+.. .....+.+||.|.|++.+.. ...+..++.||+||+| +-.+.+|.-.+.+.+-..+|..++
T Consensus 250 ~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 250 EVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 666666655442 23478999999999999976 5568899999999999 556677777777777778899999
Q ss_pred EEEeccccHHHHHHHHHHcCCCeEEEEcCccccc----------------cceeEE------------EEEcC--CCccc
Q 007090 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN----------------EDITQV------------VHVIP--SDAEK 456 (618)
Q Consensus 407 i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~----------------~~i~q~------------~~~~~--~~~~k 456 (618)
|+||||+. ..+.+.|++....+++....... .+..+. ..... ....-
T Consensus 323 ILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 323 ILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 99999997 33455555554344433221111 000011 00000 01111
Q ss_pred HHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 007090 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (618)
Q Consensus 457 ~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~-------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~ 529 (618)
+..++..+......|.||||.|++.++..+.+.|... .+-+..+|+.++..++..++.....|..+|+++|++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 2334444555555789999999999999999999753 366889999999999999999999999999999999
Q ss_pred ccccCCcCCccEEEE--------cCCCCCHHH----------HHHHHhhcccCCCCCeEEEEEecCcc
Q 007090 530 AARGLDIKSIKSVVN--------FDIARDMDM----------HVHRIGRTGRAGDKDGTAYTLVTQKE 579 (618)
Q Consensus 530 ~~~Gldi~~v~~VI~--------~~~p~~~~~----------y~Qr~GR~gR~g~~~g~~~~l~~~~d 579 (618)
|+.+|.|++|-+||. ||+-.+... -.||.||+||.- +|.||.+|+...
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~--~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR--PGICYHLYTRSR 545 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc--CCeeEEeechhh
Confidence 999999999999994 665554433 359999999996 899999999853
No 114
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=1.5e-24 Score=202.77 Aligned_cols=166 Identities=35% Similarity=0.575 Sum_probs=142.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCce
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~ 328 (618)
||+|.++++.+.+++++++.+|||+|||++|+++++..+... ...++||++|+++|+.|+...+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888653 13489999999999999999999998877789
Q ss_pred EEEEECCCChH-HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC--Ccc
Q 007090 329 VSAVYGGMSKL-DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQ 405 (618)
Q Consensus 329 ~~~~~gg~~~~-~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~--~~q 405 (618)
+..++++.... .....+..+++|+|+||++|.+.+......+.++++|||||+|.+..+.+...+..++..+.. ..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999988755 444445567999999999999999875556777999999999999988888888888888733 589
Q ss_pred EEEEeccccHHHHHH
Q 007090 406 TLLFSATMPRKVEKL 420 (618)
Q Consensus 406 ~i~~SAT~~~~~~~l 420 (618)
++++|||+++.++.+
T Consensus 155 ~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 155 IILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEESSSTHHHHHH
T ss_pred EEEEeeCCChhHhhC
Confidence 999999999776653
No 115
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.92 E-value=8.9e-24 Score=223.37 Aligned_cols=321 Identities=21% Similarity=0.335 Sum_probs=227.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
+|-++|.-+++|+. ++-+.|+..+||.|||.+ +++.|.++.... .+||. |||||...|- .|.+++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g----~~gpH-LVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG----NPGPH-LVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC----CCCCc-EEEecchhHH-HHHHHHHHhC
Confidence 47899999999975 455789999999999987 456666665542 35675 9999998776 5899999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHH----cCCcEEEeChHHHHHHH-HccccccCceeEEEecchhhhhcCCChHHHHHHH
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELK----AGCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~----~~~dIiv~Tp~~L~~~l-~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~ 397 (618)
+ .+++...+|.......++... .+++|+++||.-...-- .+..+.-.++.++|+||+|.+.++. ...+..++
T Consensus 472 P--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 P--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred C--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 8 788889999876665554433 25899999996554211 1122234578999999999988776 22333333
Q ss_pred HhcCCCccEEEEeccccH-HHHHHH---------------------------------------------HHH-------
Q 007090 398 GQIRPDRQTLLFSATMPR-KVEKLA---------------------------------------------REI------- 424 (618)
Q Consensus 398 ~~~~~~~q~i~~SAT~~~-~~~~l~---------------------------------------------~~~------- 424 (618)
+ + +..+.+++|+|+-. ++.+++ +..
T Consensus 549 ~-I-~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 S-I-NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred c-c-cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 3 2 24556888898721 111110 000
Q ss_pred ------cCC-CeE---EEE----------------------cCccc----------------cccce--eEEE-------
Q 007090 425 ------LSD-PVR---VTV----------------------GEVGM----------------ANEDI--TQVV------- 447 (618)
Q Consensus 425 ------~~~-~~~---i~~----------------------~~~~~----------------~~~~i--~q~~------- 447 (618)
+.+ |-. |.. ..... ++... ++.|
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 000 000 000 00000 00000 0000
Q ss_pred --------------------------------------EE-----cC----CCcccHHHHHHhcCCCCCC-CcEEEEcCC
Q 007090 448 --------------------------------------HV-----IP----SDAEKLPWLLEKLPGMIDD-GDVLVFASK 479 (618)
Q Consensus 448 --------------------------------------~~-----~~----~~~~k~~~l~~~l~~~~~~-~~vLVF~~~ 479 (618)
.. +. -.+.|+..|-.+|...... .+||||...
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 00 00 1245666677777666544 599999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHH
Q 007090 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557 (618)
Q Consensus 480 ~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~--~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr 557 (618)
....+.|..+|...++.+..+.|.+...+|..++..|...+ .-+|++|.+++-|||+.++++||.||...||-.-.|+
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999998754 4579999999999999999999999999999999999
Q ss_pred HhhcccCC-CCCeEEEEEecCcc
Q 007090 558 IGRTGRAG-DKDGTAYTLVTQKE 579 (618)
Q Consensus 558 ~GR~gR~g-~~~g~~~~l~~~~d 579 (618)
-.||+|.| .++-++|+|+++.-
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCc
Confidence 99999999 56788999999864
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3e-23 Score=229.10 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=119.7
Q ss_pred CCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 452 ~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
+...|+..++..+.... ...++||||+|+..++.|++.|...|+++.+||+ .+.+|+..+..|..+...|+|||++|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 34567888888875432 3559999999999999999999999999999997 68899999999999999999999999
Q ss_pred cccCCcC---CccE-----EEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHH----HHHHHHHHHcCC
Q 007090 531 ARGLDIK---SIKS-----VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAAGQ 595 (618)
Q Consensus 531 ~~Gldi~---~v~~-----VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~----~~i~~~l~~~~~ 595 (618)
+||+||+ +|.. ||++..|.+...|.|++||+||.| .+|.+++|++..|.-+. .++.+.+...+.
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG-dpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG-DPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC-CCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 9999999 5544 489999999999999999999999 68999999999875431 256666666554
No 117
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.91 E-value=4.1e-23 Score=226.39 Aligned_cols=324 Identities=20% Similarity=0.254 Sum_probs=215.6
Q ss_pred CCcHHHHHHHHHHh---cC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc-cCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQALPIIL---SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~---~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
+++.||+++++|+. .+ -+.|+|..||.|||++.+--+..-.+..+... .-+....|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57899999999964 33 38899999999999975433333333332111 1122337999995 7888999999999
Q ss_pred HhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC
Q 007090 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~ 401 (618)
++. +++....|+.......+.-.+.++|||++|..+.+-+. ++.-..+.|+|+||.|-|.+. ...+.+..+.++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 985 67777777765555555555678999999988875442 222246789999999987654 344555556665
Q ss_pred CCccEEEEecccc-HHHHHH------------------------------------------------------------
Q 007090 402 PDRQTLLFSATMP-RKVEKL------------------------------------------------------------ 420 (618)
Q Consensus 402 ~~~q~i~~SAT~~-~~~~~l------------------------------------------------------------ 420 (618)
.+. .+++|+|+- +++.++
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444 466888861 111111
Q ss_pred ----------------------------HHHHcCC---CeEEEEcCcccccc----ceeEEE-----------EEcC---
Q 007090 421 ----------------------------AREILSD---PVRVTVGEVGMANE----DITQVV-----------HVIP--- 451 (618)
Q Consensus 421 ----------------------------~~~~~~~---~~~i~~~~~~~~~~----~i~q~~-----------~~~~--- 451 (618)
.+.|-.. .+...+........ .|.|.. .+..
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 0000000 00000000000000 000000 0000
Q ss_pred --------------------CCcccHHHHHHhcCCCC---------------CCCcEEEEcCChhHHHHHHHHHHhC---
Q 007090 452 --------------------SDAEKLPWLLEKLPGMI---------------DDGDVLVFASKKTTVDEIESQLAQK--- 493 (618)
Q Consensus 452 --------------------~~~~k~~~l~~~l~~~~---------------~~~~vLVF~~~~~~~~~l~~~L~~~--- 493 (618)
....|+..|-++|.... .+.++||||+-+..++.+.+-|.+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 01234445555443221 2357999999999999999998765
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEE-ecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCC-eE
Q 007090 494 GFKAAALHGDKDQASRMEILQKFKSG-VYHVLI-ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GT 570 (618)
Q Consensus 494 ~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~VLV-aT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~-g~ 570 (618)
.+....+.|..++.+|.++.+.|+++ .++||+ +|.+++-|+|+.|+++||+++-.|||-.-+|.+.||+|.|++. -.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 33455899999999999999999998 677655 7799999999999999999999999999999999999999654 45
Q ss_pred EEEEecCc
Q 007090 571 AYTLVTQK 578 (618)
Q Consensus 571 ~~~l~~~~ 578 (618)
+|+|++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 88888875
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=3e-21 Score=210.05 Aligned_cols=284 Identities=26% Similarity=0.388 Sum_probs=200.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHH
Q 007090 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (618)
Q Consensus 238 ~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~ 317 (618)
+.+.+..-..|+..|+.-...++.|+..-+.||||.|||+ |.+.+-.++.. .|.+++||+||+.|+.|.++.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK-------KGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh-------cCCeEEEEecCHHHHHHHHHH
Confidence 3344443348999999999999999999999999999996 45544444433 368899999999999999999
Q ss_pred HHHHHhhcC-ceEEEEECCC-ChHH---HHHHHHc-CCcEEEeChHHHHHHHHccccccC--ceeEEEecchhhhhcCC-
Q 007090 318 TKKFAKSHG-IRVSAVYGGM-SKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEADRMFDLG- 388 (618)
Q Consensus 318 ~~~~~~~~~-~~~~~~~gg~-~~~~---~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~--~~~~iIvDEah~~~~~~- 388 (618)
+.+++...+ .++..+|.+. +..+ ....+.+ +.||+|+|.+-|...+. .|. +|++|++|.+|.++..+
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH----HhcccCCCEEEEccHHHHHhccc
Confidence 999987665 4444434444 3222 2334443 58999999877765543 233 68999999999875422
Q ss_pred ----------ChHH-------HHHHHHhc------------------------CCCccEEEEeccccHH--HHHHHHHHc
Q 007090 389 ----------FEPQ-------IRSIVGQI------------------------RPDRQTLLFSATMPRK--VEKLAREIL 425 (618)
Q Consensus 389 ----------~~~~-------i~~i~~~~------------------------~~~~q~i~~SAT~~~~--~~~l~~~~~ 425 (618)
|... +..+...+ .+..++++.|||..+. -..+.+.++
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 2211 01111111 1235789999998653 234566665
Q ss_pred CCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeC
Q 007090 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK---KTTVDEIESQLAQKGFKAAALHG 502 (618)
Q Consensus 426 ~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~---~~~~~~l~~~L~~~~~~~~~l~g 502 (618)
+- .++.......+|...+... .-...+.++++.. +.+.|||++. .+.+++++++|+.+|+++..+|+
T Consensus 301 gF----evG~~~~~LRNIvD~y~~~----~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 301 GF----EVGSGGEGLRNIVDIYVES----ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred CC----ccCccchhhhheeeeeccC----ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 53 3333333334444443322 3344445555443 4589999999 99999999999999999999997
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEec----ccccccCCcCC-ccEEEEcCCC
Q 007090 503 DKDQASRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIA 548 (618)
Q Consensus 503 ~~~~~~r~~~~~~F~~g~~~VLVaT----~~~~~Gldi~~-v~~VI~~~~p 548 (618)
. ....++.|..|+++|||.+ .++-||||+|. ++++|+|+.|
T Consensus 371 ~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred c-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3 3678999999999999976 47779999996 8999999998
No 119
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=2.8e-22 Score=226.67 Aligned_cols=330 Identities=18% Similarity=0.227 Sum_probs=216.6
Q ss_pred CcHHHHHHHHHHhcC---C-cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 248 PTSIQCQALPIILSG---R-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~---~-dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
+.+.|..++..+.+. . .+++.||||+|||.+.+++++...... ....++++.+.|+|.+..++++.+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 478899999887744 3 788999999999999888887776542 12578899999999999999999998766
Q ss_pred hcCceEEEEECCCChHHHHHHH---------------HcCCcEEEeChHHHHHHHHcc-ccc-c--CceeEEEecchhhh
Q 007090 324 SHGIRVSAVYGGMSKLDQFKEL---------------KAGCEIVIATPGRLIDMLKMK-ALT-M--SRVTYLVLDEADRM 384 (618)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l---------------~~~~dIiv~Tp~~L~~~l~~~-~~~-l--~~~~~iIvDEah~~ 384 (618)
..+.......+..... -.... .....++++||-.+....... ... + -..+++|+||+|.+
T Consensus 272 ~~~~~~~~~h~~~~~~-~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 272 LFSVIGKSLHSSSKEP-LLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred ccccccccccccccch-hhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 4433322112221111 10000 001345555555554422111 111 1 13478999999987
Q ss_pred hcCCChHHHHHHHHhcC-CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccc---cccceeEEEEEcCCCcccHHHH
Q 007090 385 FDLGFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM---ANEDITQVVHVIPSDAEKLPWL 460 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~~i~q~~~~~~~~~~k~~~l 460 (618)
........+..++..+. ....+|+||||+|+.....+...+.....+....... ....+.+... ..........+
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~ 429 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQEEL 429 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhhhhhhhHhh
Confidence 76644445555554443 4678999999999999988888877654444332110 0001111100 00000000112
Q ss_pred HHhcC-CCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh----cCCceEEEecccccccCC
Q 007090 461 LEKLP-GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK----SGVYHVLIATDVAARGLD 535 (618)
Q Consensus 461 ~~~l~-~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~----~g~~~VLVaT~~~~~Gld 535 (618)
...+. .....++++|.|||...|.+++..|+..+.++..+||.+...+|.+.+..+. .+...|+|||++++.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 22222 2224569999999999999999999998878999999999999998888654 467889999999999999
Q ss_pred cCCccEEEEcCCCCCHHHHHHHHhhcccCCC-CCeEEEEEecCccHHHHHHH
Q 007090 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQKEARFAGEL 586 (618)
Q Consensus 536 i~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~-~~g~~~~l~~~~d~~~~~~i 586 (618)
|. .+.+ +.-+..+...+||+||++|.|. ..|.++.+............
T Consensus 510 id-fd~m--ITe~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~ 558 (733)
T COG1203 510 ID-FDVL--ITELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYS 558 (733)
T ss_pred cc-cCee--eecCCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhh
Confidence 94 4444 4556778999999999999993 35777776665544433333
No 120
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=7.3e-22 Score=198.49 Aligned_cols=328 Identities=18% Similarity=0.250 Sum_probs=214.2
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
+..|...+++++..+.+++..--..+..+..-+..+.+++.+++.|+||||||.+ +|.+...+..+. ...|..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~-----~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSH-----LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhh-----ccceee
Confidence 6778888899999888887643334455556677888999999999999999986 554433322211 245788
Q ss_pred EcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 007090 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~ 383 (618)
..|+|..|.+++.++..- +.+..+.-+|..-..+.+.. ...=+-+||.+.|++....+. .+.++++||+||||.
T Consensus 97 TQprrvaamsva~RVadE---MDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHE 170 (699)
T ss_pred cCchHHHHHHHHHHHHHH---hccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhh
Confidence 899999999887665543 34444444444333322110 011233788888888775444 489999999999994
Q ss_pred -hhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHH
Q 007090 384 -MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (618)
Q Consensus 384 -~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (618)
.+..+..-.+.+-+..-+++.++|+||||+... -...|++++-.+.+... ..+.- +..-....+.+...++
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi-~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEI-FYTPEPERDYLEAAIR 242 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEE-EecCCCChhHHHHHHH
Confidence 232222222222222336789999999998533 44566666555554431 11111 2211122233333333
Q ss_pred hc---CCCCCCCcEEEEcCChhHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhc---C--CceEEE
Q 007090 463 KL---PGMIDDGDVLVFASKKTTVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKS---G--VYHVLI 525 (618)
Q Consensus 463 ~l---~~~~~~~~vLVF~~~~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~r~~~~~~F~~---g--~~~VLV 525 (618)
.+ .....+|.||||.++.++++..++.+... .+++..+| +.++.++++.... | ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 22 22235789999999999999999998753 35788888 4444455443322 2 368999
Q ss_pred ecccccccCCcCCccEEEEcCC------------------CCCHHHHHHHHhhcccCCCCCeEEEEEecCc
Q 007090 526 ATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (618)
Q Consensus 526 aT~~~~~Gldi~~v~~VI~~~~------------------p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~ 578 (618)
+|+++...+.|++|.+||.-+. |-|-.+-.||.||+||.- +|.|+.+++..
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~--pGkcfrLYte~ 387 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR--PGKCFRLYTEE 387 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC--CCceEEeecHH
Confidence 9999999999999999996443 335566679999999985 89999999974
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.6e-21 Score=206.44 Aligned_cols=317 Identities=20% Similarity=0.209 Sum_probs=221.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|++.|.-+.-.+++| -|..+.||+|||++..+|++...+. |..|.|++|+.-||.|-++++..+...+
T Consensus 77 ~r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 36888999988888877 4779999999999999998877654 6779999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-----HHHH--ccccccCceeEEEecchhhhhc-C----------
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-----DMLK--MKALTMSRVTYLVLDEADRMFD-L---------- 387 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-----~~l~--~~~~~l~~~~~iIvDEah~~~~-~---------- 387 (618)
|+++.++.++.+..+.. ... .|||+++|..-|. +.+. ......+.+.+.||||+|.|+- .
T Consensus 147 GLsvg~i~~~~~~~err-~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERR-AAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHH-HHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 99999998877655433 333 4899999987653 2221 1223356689999999997621 0
Q ss_pred ----CChHHHHHHHHhcCCC------------------------------------------------------------
Q 007090 388 ----GFEPQIRSIVGQIRPD------------------------------------------------------------ 403 (618)
Q Consensus 388 ----~~~~~i~~i~~~~~~~------------------------------------------------------------ 403 (618)
.....+..+...+...
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 0111111111111100
Q ss_pred ----------------------------------------------------------ccEEEEeccccHHHHHHHHHHc
Q 007090 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (618)
Q Consensus 404 ----------------------------------------------------------~q~i~~SAT~~~~~~~l~~~~~ 425 (618)
.++.+||+|......++...|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 2456777777655555444443
Q ss_pred CCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCC
Q 007090 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (618)
Q Consensus 426 ~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~ 504 (618)
- ++.+.+...+. .........+.....|+..+++.+..... +.+|||.+.+....+.++..|.+.|++..+|+..-
T Consensus 385 l-~Vv~IPtnkp~--~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~ 461 (764)
T PRK12326 385 L-GVSVIPPNKPN--IREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN 461 (764)
T ss_pred C-cEEECCCCCCc--eeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc
Confidence 2 22222111111 11111112333456788888887765543 45999999999999999999999999999999864
Q ss_pred CHHHHHHHHHHHhcCC-ceEEEecccccccCCcC---------------CccEEEEcCCCCCHHHHHHHHhhcccCCCCC
Q 007090 505 DQASRMEILQKFKSGV-YHVLIATDVAARGLDIK---------------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (618)
Q Consensus 505 ~~~~r~~~~~~F~~g~-~~VLVaT~~~~~Gldi~---------------~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~ 568 (618)
...+- .++. ..|+ -.|.|||++|+||.||. |==+||--..+.|..--.|-.||+||.| .+
T Consensus 462 ~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG-Dp 537 (764)
T PRK12326 462 DAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG-DP 537 (764)
T ss_pred hHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC-CC
Confidence 43332 2221 2343 46999999999999997 3347998888999999999999999999 58
Q ss_pred eEEEEEecCccHH
Q 007090 569 GTAYTLVTQKEAR 581 (618)
Q Consensus 569 g~~~~l~~~~d~~ 581 (618)
|.+..|+|-.|.-
T Consensus 538 Gss~f~lSleDdl 550 (764)
T PRK12326 538 GSSVFFVSLEDDV 550 (764)
T ss_pred CceeEEEEcchhH
Confidence 9999999987743
No 122
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.88 E-value=5.8e-21 Score=207.52 Aligned_cols=110 Identities=21% Similarity=0.435 Sum_probs=101.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--ceEEEecccccccCCcCCccEEEEcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDI 547 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~--~~VLVaT~~~~~Gldi~~v~~VI~~~~ 547 (618)
+.++|||.....+.+-|..+|.-+|+.++.|.|.++.++|...++.|+..+ +++|++|...+.|+|+.++++||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 458999999999999999999999999999999999999999999999864 467889999999999999999999999
Q ss_pred CCCHHHHHHHHhhcccCC-CCCeEEEEEecCcc
Q 007090 548 ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQKE 579 (618)
Q Consensus 548 p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~d 579 (618)
.||+.--.|.-.||+|.| .+.-+.|+|++..-
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 999999999999999999 45678999999864
No 123
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=3.8e-20 Score=204.87 Aligned_cols=133 Identities=22% Similarity=0.382 Sum_probs=117.3
Q ss_pred cccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 007090 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (618)
Q Consensus 454 ~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 532 (618)
..++..|+..+..... +.++||||+++..++.++++|...|+.+..+||++++.+|.+++..|+.|++.|||||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3466677777765543 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCccEEEEcC-----CCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHH
Q 007090 533 GLDIKSIKSVVNFD-----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 533 Gldi~~v~~VI~~~-----~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
|+|+|++++||+++ .|.+...|+||+||+||.. .|.|+.+++..+......|.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~--~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999988 7999999999999999985 799999999876555444444
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=7.4e-20 Score=211.24 Aligned_cols=346 Identities=19% Similarity=0.217 Sum_probs=214.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccH
Q 007090 233 STQLMHAISKQGYEKPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (618)
Q Consensus 233 ~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr 308 (618)
++.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.+.. ++.+++|.+||+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCcH
Confidence 34566666667775 8999998666 5667899999999999999999999988764 245799999999
Q ss_pred HHHHHHHH-HHHHHHhhcC--ceEEEEECCCChH----------------------------------------------
Q 007090 309 ELAHQIYL-ETKKFAKSHG--IRVSAVYGGMSKL---------------------------------------------- 339 (618)
Q Consensus 309 ~La~q~~~-~~~~~~~~~~--~~~~~~~gg~~~~---------------------------------------------- 339 (618)
+|..|+.. .+..+.+..+ ++++.+.|+.+.-
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999965 5665555444 6666666543210
Q ss_pred -------------------------HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-------
Q 007090 340 -------------------------DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL------- 387 (618)
Q Consensus 340 -------------------------~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~------- 387 (618)
...+.....++||||++..|...+......+....++||||||++.+.
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 000011123889999999888776444333566789999999987420
Q ss_pred CC-----hH----------------------------------------------------------------HHHHHHH
Q 007090 388 GF-----EP----------------------------------------------------------------QIRSIVG 398 (618)
Q Consensus 388 ~~-----~~----------------------------------------------------------------~i~~i~~ 398 (618)
.+ .. .+...+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 00 00 0000000
Q ss_pred h-----------c-------------------------------------CCCccEEEEeccccHH-HHHHHHHHcCCC-
Q 007090 399 Q-----------I-------------------------------------RPDRQTLLFSATMPRK-VEKLAREILSDP- 428 (618)
Q Consensus 399 ~-----------~-------------------------------------~~~~q~i~~SAT~~~~-~~~l~~~~~~~~- 428 (618)
. + +....+|++|||++.. -.......++-+
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 0014688999999732 122344434422
Q ss_pred eE-EEEcCccccccceeEEEEEcCC--C-------cccHHHHHHhcCCC--CCCCcEEEEcCChhHHHHHHHHHHh----
Q 007090 429 VR-VTVGEVGMANEDITQVVHVIPS--D-------AEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQ---- 492 (618)
Q Consensus 429 ~~-i~~~~~~~~~~~i~q~~~~~~~--~-------~~k~~~l~~~l~~~--~~~~~vLVF~~~~~~~~~l~~~L~~---- 492 (618)
.. ......... ...+...+++. + ..-...+...|... ..+|++|||++++..++.++..|..
T Consensus 623 ~~~~~~~~spf~--~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~ 700 (850)
T TIGR01407 623 VHFNTIEPTPLN--YAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEF 700 (850)
T ss_pred cccceecCCCCC--HHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccc
Confidence 11 111111111 01111122111 1 11111233322221 1367999999999999999999975
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCcc--EEEEcCCCCC----H---------------
Q 007090 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK--SVVNFDIARD----M--------------- 551 (618)
Q Consensus 493 ~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~--~VI~~~~p~~----~--------------- 551 (618)
.++. ++..+.. ..|..+++.|+.|+..||++|+.+.+|+|+++.. .||+..+|.. +
T Consensus 701 ~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~ 777 (850)
T TIGR01407 701 EGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKN 777 (850)
T ss_pred cCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 2333 3333333 4788999999999999999999999999999855 6777776642 1
Q ss_pred -----------HHHHHHHhhcccCCCCCeEEEEEecC-ccHHHHHHHHHHHHH
Q 007090 552 -----------DMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIA 592 (618)
Q Consensus 552 -----------~~y~Qr~GR~gR~g~~~g~~~~l~~~-~d~~~~~~i~~~l~~ 592 (618)
..+.|.+||+-|..+..|.++.+-.. ....+-..+.+.|..
T Consensus 778 ~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 778 PFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred chHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 22249999999998555654444333 255666777777654
No 125
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.87 E-value=1.4e-20 Score=204.81 Aligned_cols=326 Identities=18% Similarity=0.235 Sum_probs=209.7
Q ss_pred CCCcHHHHHHHHHHhc---C-------CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILS---G-------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~---~-------~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~ 315 (618)
..++|+|++++.-+.. | ..+|+...+|+|||++. ++++..++.+.+...+--.+.|||||. .|...|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEccH-HHHHHHH
Confidence 3588999999988652 2 35788899999999974 455555555433322334678999994 7888999
Q ss_pred HHHHHHHhhcCceEEEEECCCCh-HHHHHH-H-----HcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC
Q 007090 316 LETKKFAKSHGIRVSAVYGGMSK-LDQFKE-L-----KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (618)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~gg~~~-~~~~~~-l-----~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~ 388 (618)
+++.+|.....+....+++..+. +..... + .-..-|.+.+++.+.+.+. .+.+..++++|+||.|++-+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch-
Confidence 99999988767777777777664 111110 1 1125688889999876543 445678999999999997655
Q ss_pred ChHHHHHHHHhcCCCccEEEEecccc-HH---------------------------------------------------
Q 007090 389 FEPQIRSIVGQIRPDRQTLLFSATMP-RK--------------------------------------------------- 416 (618)
Q Consensus 389 ~~~~i~~i~~~~~~~~q~i~~SAT~~-~~--------------------------------------------------- 416 (618)
...+...+..+.-.+ .|++|+|+- ++
T Consensus 392 -~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 345556666665444 577888861 11
Q ss_pred HHHHHHHHcCC----------CeE---EEEcCccc---------------------------------------------
Q 007090 417 VEKLAREILSD----------PVR---VTVGEVGM--------------------------------------------- 438 (618)
Q Consensus 417 ~~~l~~~~~~~----------~~~---i~~~~~~~--------------------------------------------- 438 (618)
+..+...|+.. |.. +.+-....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11111111111 000 00000000
Q ss_pred ------cccceeEEEE---Ec---CCCcccHHHHHHhcCCCCC--CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCC
Q 007090 439 ------ANEDITQVVH---VI---PSDAEKLPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (618)
Q Consensus 439 ------~~~~i~q~~~---~~---~~~~~k~~~l~~~l~~~~~--~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~ 504 (618)
.++....... .- .....|+..|..++..... ..++.+..|.+...+.+...++-.|+.++.+||.+
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 0000000000 00 0011233333333321111 12455555666667777777777799999999999
Q ss_pred CHHHHHHHHHHHhcC--C-ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCC-eEEEEEecCc
Q 007090 505 DQASRMEILQKFKSG--V-YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK 578 (618)
Q Consensus 505 ~~~~r~~~~~~F~~g--~-~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~-g~~~~l~~~~ 578 (618)
+..+|..++..|++. . .-+|++|.+.+.||++-|+++||+||+.|||+.-.|+++|+.|.|++. -.+|+|++..
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999999863 3 346778889999999999999999999999999999999999999654 5567777653
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1e-19 Score=203.78 Aligned_cols=299 Identities=17% Similarity=0.161 Sum_probs=182.6
Q ss_pred CcHHHHHHHHHHh----c------CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHH
Q 007090 248 PTSIQCQALPIIL----S------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (618)
Q Consensus 248 ~~~~Q~~~i~~i~----~------~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~ 317 (618)
++++|..++..+. + .+..+++++||||||++.+..+. .++. ...++++|||+|+++|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~-----~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALE-----LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHh-----hcCCCeEEEEECcHHHHHHHHHH
Confidence 7889999987754 2 25799999999999987544443 3322 23478999999999999999999
Q ss_pred HHHHHhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHcc--ccccCc-eeEEEecchhhhhcCCChHHH
Q 007090 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK--ALTMSR-VTYLVLDEADRMFDLGFEPQI 393 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~--~~~l~~-~~~iIvDEah~~~~~~~~~~i 393 (618)
+..+... . ..+..+.......+.. ...|+|+|.++|...+... ...... --+||+||||+.... .+
T Consensus 313 f~~~~~~----~--~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKD----C--AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCC----C--CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 9988531 1 1111222222233332 3689999999998644321 111111 138999999985422 33
Q ss_pred HHHHHhcCCCccEEEEeccccHHHHHHHHHHc----CCCeEEEEcCccccccceeEEEEE--------cCC---------
Q 007090 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREIL----SDPVRVTVGEVGMANEDITQVVHV--------IPS--------- 452 (618)
Q Consensus 394 ~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~----~~~~~i~~~~~~~~~~~i~q~~~~--------~~~--------- 452 (618)
...+...-++...++|||||-..........+ +.++..+ .-...........+.+ +..
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y-~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRY-FITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEe-eHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 34443333567899999999542111111111 1222111 1000111110000000 000
Q ss_pred -----------------------------CcccHHH----HHHhcCCCC--CCCcEEEEcCChhHHHHHHHHHHhC----
Q 007090 453 -----------------------------DAEKLPW----LLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK---- 493 (618)
Q Consensus 453 -----------------------------~~~k~~~----l~~~l~~~~--~~~~vLVF~~~~~~~~~l~~~L~~~---- 493 (618)
...+... +++.+.... ..++.+|||.++..|..+++.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0000111 111111111 2479999999999999999998664
Q ss_pred -CCcEEEEeCCCCHH---------------------HHHHHHHHHhc-CCceEEEecccccccCCcCCccEEEEcCCCCC
Q 007090 494 -GFKAAALHGDKDQA---------------------SRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIARD 550 (618)
Q Consensus 494 -~~~~~~l~g~~~~~---------------------~r~~~~~~F~~-g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~ 550 (618)
+.....+++..+.. ....+++.|+. +..+|||+++++.+|+|.|.+.+++...+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 24556666654332 12468889976 68899999999999999999999999887776
Q ss_pred HHHHHHHHhhcccC
Q 007090 551 MDMHVHRIGRTGRA 564 (618)
Q Consensus 551 ~~~y~Qr~GR~gR~ 564 (618)
. .++|++||+.|.
T Consensus 622 h-~LlQai~R~nR~ 634 (667)
T TIGR00348 622 H-GLLQAIARTNRI 634 (667)
T ss_pred c-HHHHHHHHhccc
Confidence 5 589999999994
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4e-20 Score=203.94 Aligned_cols=329 Identities=18% Similarity=0.177 Sum_probs=220.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+++|..+--.+ ...-|..+.||+|||+++.+|++...+. |..|.|++||.-||.|-++++..+...+|
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4666676554444 4557889999999999999999876654 67799999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHc------cccccCceeEEEecchhhhhc-C-----------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKM------KALTMSRVTYLVLDEADRMFD-L----------- 387 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~------~~~~l~~~~~iIvDEah~~~~-~----------- 387 (618)
+++.++.++.+..+.... .. +||+++|..-| .++|.. .....+.+.++||||+|.++- .
T Consensus 152 l~v~~i~~~~~~~err~~-Y~-~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAA-YA-ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHH-hc-CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 999999887765544333 32 99999999886 233321 122347889999999998631 0
Q ss_pred ----CChHHHHHHHHhcCC-------------------C-----------------------------------------
Q 007090 388 ----GFEPQIRSIVGQIRP-------------------D----------------------------------------- 403 (618)
Q Consensus 388 ----~~~~~i~~i~~~~~~-------------------~----------------------------------------- 403 (618)
.....+..++..+.. .
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 000111111111100 0
Q ss_pred ---------------------------------------------------------------------------ccEEE
Q 007090 404 ---------------------------------------------------------------------------RQTLL 408 (618)
Q Consensus 404 ---------------------------------------------------------------------------~q~i~ 408 (618)
.++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 23445
Q ss_pred EeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHH
Q 007090 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIE 487 (618)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~ 487 (618)
||+|......++...|-- ++.+.+....... ....-.++.+...|+..+++.+..... +.+|||-+.|....+.|+
T Consensus 390 MTGTa~te~~Ef~~iY~l-~Vv~IPTnkP~~R--~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGL-DVVVIPPNKPLAR--KDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHHHHHHhCC-CEEECCCCCCccc--ccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 555554444443333322 2222211111111 111112334456788888888776544 449999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceEEEecccccccCCcC-----------------------------
Q 007090 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVLIATDVAARGLDIK----------------------------- 537 (618)
Q Consensus 488 ~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~VLVaT~~~~~Gldi~----------------------------- 537 (618)
+.|++.|++..+|+......+-.-+ . ..| .-.|.|||++|+||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~II--a-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAEII--A-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHHHH--H-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 9999999998888876443322222 2 445 346999999999999995
Q ss_pred --------CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHH----HHHHHHHHHHcC
Q 007090 538 --------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF----AGELVNSLIAAG 594 (618)
Q Consensus 538 --------~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~----~~~i~~~l~~~~ 594 (618)
|==+||--..+.|..--.|-.||+||.| .+|.+..|+|-.|.-+ ..++.+.+...+
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSlED~Lmr~fg~~~~~~~~~~~~ 611 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDSLMRIFASDRVKNFMKALG 611 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHHHHhhCcHHHHHHHHHcC
Confidence 3347888888889888899999999999 5899999999876443 235555554443
No 128
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.85 E-value=1.4e-19 Score=182.64 Aligned_cols=315 Identities=17% Similarity=0.207 Sum_probs=218.2
Q ss_pred CCCcHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 246 EKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~-~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
..|.|+|++++...+ .|..+++..+||.|||++++..+..+... .| .||+||. .+-..|++.+.+|++.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wp-lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WP-LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------Cc-EEEEecH-HHhHHHHHHHHHhccc
Confidence 457799999997755 77899999999999999976555544433 33 6899996 5556799999999875
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
..- +.++.++...... +-....|.|.+++.|..+- +.+.-..+.+||+||+|.+.+.. ...++.++..+..-.
T Consensus 267 ~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 433 4455555544322 2223578999998886553 22233458999999999887654 344666666666667
Q ss_pred cEEEEecccc-------------------HHHHHHHHHHcCC-CeEEEEcCccccc------------------------
Q 007090 405 QTLLFSATMP-------------------RKVEKLAREILSD-PVRVTVGEVGMAN------------------------ 440 (618)
Q Consensus 405 q~i~~SAT~~-------------------~~~~~l~~~~~~~-~~~i~~~~~~~~~------------------------ 440 (618)
++|++|+|+. ++..+++..||.- .+.+-....+..+
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999972 2233445555532 1222222211111
Q ss_pred --cceeEEEEEcCC-------------------------------------CcccHHHHHHhcCC-----CCCCCcEEEE
Q 007090 441 --EDITQVVHVIPS-------------------------------------DAEKLPWLLEKLPG-----MIDDGDVLVF 476 (618)
Q Consensus 441 --~~i~q~~~~~~~-------------------------------------~~~k~~~l~~~l~~-----~~~~~~vLVF 476 (618)
.. ++.+.++.. ...|...+.+.|.. -...-+.|||
T Consensus 420 LPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 420 LPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred CCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 12 222222211 01122222222222 1123489999
Q ss_pred cCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceE-EEecccccccCCcCCccEEEEcCCCCCHHHH
Q 007090 477 ASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV-LIATDVAARGLDIKSIKSVVNFDIARDMDMH 554 (618)
Q Consensus 477 ~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~V-LVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y 554 (618)
|......+.+...+.+.++....|.|.++..+|....+.|+.. ++.| +++-.+++.||++...+.||+..++|||...
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 9999999999999999999999999999999999999999865 4555 5566888999999999999999999999999
Q ss_pred HHHHhhcccCCCCCeEEEEEecCc
Q 007090 555 VHRIGRTGRAGDKDGTAYTLVTQK 578 (618)
Q Consensus 555 ~Qr~GR~gR~g~~~g~~~~l~~~~ 578 (618)
+|.-.|++|.|++..+.+.++...
T Consensus 579 lQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred EechhhhhhccccceeeEEEEEec
Confidence 999999999997766655555543
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.8e-19 Score=196.72 Aligned_cols=329 Identities=18% Similarity=0.223 Sum_probs=225.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|++.|.-+.-.+..| -|..+.||-|||+++.+|+..+.+. |..|-|++...-||..=++++..+...+|
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 5778887777666555 5899999999999999998765543 66688999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHHc------cccccCceeEEEecchhhhhc-C-----------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMFD-L----------- 387 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~~------~~~~l~~~~~iIvDEah~~~~-~----------- 387 (618)
+.|.+...+....+..... .|||+++|..-|. ++|+- .....+.+.+.||||+|.++- .
T Consensus 148 LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 9999988876655443332 4999999997764 33321 122356788999999997621 0
Q ss_pred ----CChHHHHHHHHhcCC-------------------------------------------------------------
Q 007090 388 ----GFEPQIRSIVGQIRP------------------------------------------------------------- 402 (618)
Q Consensus 388 ----~~~~~i~~i~~~~~~------------------------------------------------------------- 402 (618)
.+...+..++..+..
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 011111122221110
Q ss_pred -------------------------------------------------------CccEEEEeccccHHHHHHHHHHcCC
Q 007090 403 -------------------------------------------------------DRQTLLFSATMPRKVEKLAREILSD 427 (618)
Q Consensus 403 -------------------------------------------------------~~q~i~~SAT~~~~~~~l~~~~~~~ 427 (618)
-.++.+||+|......++...|.-+
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 0245567777665555555444332
Q ss_pred CeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCH
Q 007090 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (618)
Q Consensus 428 ~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~ 506 (618)
.+.|.... +.. ........+.+...|+..++..+..... +.||||.|.+....+.|++.|.+.|++..+|+....
T Consensus 386 Vv~IPTnk-P~~--R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 386 VNVVPTNK-PVI--RKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred EEECCCCC-Cee--eeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 22221111 111 1111112233456788888887765543 459999999999999999999999999999998643
Q ss_pred HHHHHHHHHHhcC-CceEEEecccccccCCcCCcc--------EEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC
Q 007090 507 ASRMEILQKFKSG-VYHVLIATDVAARGLDIKSIK--------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 507 ~~r~~~~~~F~~g-~~~VLVaT~~~~~Gldi~~v~--------~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
+++..+-. ..| .-.|.|||++|+||.||.--. +||....|.|..--.|..||+||.| .+|.+..|+|-
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG-DpGss~f~lSL 538 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG-DVGESRFFISL 538 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC-CCCcceEEEec
Confidence 33333322 455 456999999999999997432 8999999999888899999999999 58999999998
Q ss_pred ccHHHH-----HHHHHHHHHcC
Q 007090 578 KEARFA-----GELVNSLIAAG 594 (618)
Q Consensus 578 ~d~~~~-----~~i~~~l~~~~ 594 (618)
.|.-+. .++...+...+
T Consensus 539 eD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 539 DDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred chHHHHHhCCHHHHHHHHHhcC
Confidence 875432 35665555544
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=4.4e-20 Score=198.38 Aligned_cols=297 Identities=19% Similarity=0.223 Sum_probs=196.3
Q ss_pred CCCcHHHHHHHHHHh----cC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
..|+++|..|+..+. .| +.+|+.+.||+|||.++ +.++..+++. +...+||+|+-++.|..|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 458999999997754 33 46999999999999864 4444455443 3457799999999999999999988
Q ss_pred HHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-----ccccCceeEEEecchhhhhcCCChHHHHH
Q 007090 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (618)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-----~~~l~~~~~iIvDEah~~~~~~~~~~i~~ 395 (618)
+.+.. -.+..+.+-... ..++|.|+|++.+...+... .+....|++|||||||+-.-. ....
T Consensus 238 ~~P~~-~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~----~~~~ 304 (875)
T COG4096 238 FLPFG-TKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS----EWSS 304 (875)
T ss_pred hCCCc-cceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh----hhHH
Confidence 87643 222222221111 14899999999999888654 233456999999999984433 3335
Q ss_pred HHHhcCCCccEEEEeccccHHHHHHHHHHc-CCCeEEEEcCcc-----ccccceeEE-----------------------
Q 007090 396 IVGQIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVG-----MANEDITQV----------------------- 446 (618)
Q Consensus 396 i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~-----~~~~~i~q~----------------------- 446 (618)
|+.++..-+ +++|||+...+..-.-.|+ +.|+..+.-..+ .....+.+.
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 555554333 4459999765554444555 555443321100 000111110
Q ss_pred --------EEEcC--------CCc-ccHHHHHHhcCCC--C-CCCcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEe
Q 007090 447 --------VHVIP--------SDA-EKLPWLLEKLPGM--I-DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALH 501 (618)
Q Consensus 447 --------~~~~~--------~~~-~k~~~l~~~l~~~--~-~~~~vLVF~~~~~~~~~l~~~L~~~-----~~~~~~l~ 501 (618)
+...+ ... .-...|.+.+... . .-+++||||.+..+|++++..|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 10000 000 0112233444431 1 1468999999999999999999764 45577888
Q ss_pred CCCCHHHHHHHHHHHhc--CCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC
Q 007090 502 GDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (618)
Q Consensus 502 g~~~~~~r~~~~~~F~~--g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g 565 (618)
|...+.+ ..+..|.. .-..|.|+.+++.+|+|+|.|.++|++..-.|..-|.|++||+-|.-
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 8765543 34555654 33568888899999999999999999999999999999999999964
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=2.2e-19 Score=171.71 Aligned_cols=187 Identities=41% Similarity=0.627 Sum_probs=156.8
Q ss_pred CCCCCCcHHHHHHHHHHhcC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.++..|+++|.++++.+... +.++++++||+|||.+++.+++.++.... ..++||++|++.++.||...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 35678999999999999998 99999999999999988888887765432 467999999999999999999988
Q ss_pred HhhcCceEEEEECCCChHHHHHHHHcCC-cEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc
Q 007090 322 AKSHGIRVSAVYGGMSKLDQFKELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~-dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~ 400 (618)
+...........++......+..+..+. +|+++|++.+.+.+.........+.++||||||.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7654445566666666666666677666 999999999999987766667789999999999988767788888888888
Q ss_pred CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcC
Q 007090 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (618)
Q Consensus 401 ~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (618)
++..+++++|||++......+..++.+.+.+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999999999999888777766554
No 132
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.83 E-value=2.4e-19 Score=187.15 Aligned_cols=128 Identities=23% Similarity=0.412 Sum_probs=111.7
Q ss_pred CcccHHHHHHhcCCCCCC-CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCc-eEEEecccc
Q 007090 453 DAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY-HVLIATDVA 530 (618)
Q Consensus 453 ~~~k~~~l~~~l~~~~~~-~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~-~VLVaT~~~ 530 (618)
.+.|+..|.++|..+... .++|+|.+...+++.+.+||.-.++....+.|.....+|..++.+|+...+ -+|++|.++
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 455666666666655444 489999999999999999999999999999999999999999999998654 468899999
Q ss_pred cccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC-CCCeEEEEEecCccH
Q 007090 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEA 580 (618)
Q Consensus 531 ~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~d~ 580 (618)
+-|||+..+++||+|+..|||.--.|...|++|.| .+.-++|++++..-.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 99999999999999999999999999999999999 445788999987643
No 133
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=1.9e-18 Score=192.89 Aligned_cols=147 Identities=22% Similarity=0.336 Sum_probs=128.3
Q ss_pred ccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 007090 455 EKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (618)
Q Consensus 455 ~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~G 533 (618)
.++..++..|..... +.++||||+++..++.++..|...|+++..+||++++.+|..++..|+.|.+.|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 456677777765543 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCccEEEEcCC-----CCCHHHHHHHHhhcccCCCCCeEEEEEecC---------ccHHHHHHHHHHHHHcCCCCCH
Q 007090 534 LDIKSIKSVVNFDI-----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---------KEARFAGELVNSLIAAGQNVSM 599 (618)
Q Consensus 534 ldi~~v~~VI~~~~-----p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~---------~d~~~~~~i~~~l~~~~~~v~~ 599 (618)
+|+|++++||+++. |.+...|+||+||+||.. .|.|+.|++. .+...+.++...+......+|.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~--~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCC--CCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 99999999999885 789999999999999963 7999999984 4666677777777777788887
Q ss_pred HHHH
Q 007090 600 ELMD 603 (618)
Q Consensus 600 ~l~~ 603 (618)
...+
T Consensus 588 ~~~~ 591 (652)
T PRK05298 588 TIKK 591 (652)
T ss_pred hHHH
Confidence 7643
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=6.9e-18 Score=185.27 Aligned_cols=312 Identities=23% Similarity=0.327 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~----~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..+++-|+.++..+... ...++.+-||||||.+|+ .++..++.+ |..+|||+|-..|-.|+...++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHH-HHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHH
Confidence 46788999999998765 688999999999999875 445555543 788999999999999998888876
Q ss_pred HhhcCceEEEEECCCChHHH---HHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh--cC-CChHHHH
Q 007090 322 AKSHGIRVSAVYGGMSKLDQ---FKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF--DL-GFEPQIR 394 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~--~~-~~~~~i~ 394 (618)
. +.++..++++.+..+. |.+.. ....|+|+|-..| ...+.++.+|||||=|.-. .. +...+.+
T Consensus 269 F---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 F---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred h---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 5 6788888888876654 44444 4589999995332 2357889999999999532 11 1122222
Q ss_pred --HHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEc-Ccccc-ccceeEEEEEcCCCccc----HHHHHHhcCC
Q 007090 395 --SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG-EVGMA-NEDITQVVHVIPSDAEK----LPWLLEKLPG 466 (618)
Q Consensus 395 --~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~-~~~~~-~~~i~q~~~~~~~~~~k----~~~l~~~l~~ 466 (618)
.++..-..+.++|+-|||++- +.+.+-.-+....+... ..+.+ ...+.-. ..-...... -..|++.+.+
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~ii-Dmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEII-DMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEE-eccccccccCccCCHHHHHHHHH
Confidence 344444467889999999864 44444322211122111 11111 1111111 111111111 1445555554
Q ss_pred CCC-CCcEEEEcCChhHH------------------------------------------------------------HH
Q 007090 467 MID-DGDVLVFASKKTTV------------------------------------------------------------DE 485 (618)
Q Consensus 467 ~~~-~~~vLVF~~~~~~~------------------------------------------------------------~~ 485 (618)
.+. +.++|+|.|.+..+ ++
T Consensus 416 ~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gter 495 (730)
T COG1198 416 TLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTER 495 (730)
T ss_pred HHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHH
Confidence 443 34788888776654 44
Q ss_pred HHHHHHhC--CCcEEEEeCCCCHH--HHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCC------------
Q 007090 486 IESQLAQK--GFKAAALHGDKDQA--SRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------ 549 (618)
Q Consensus 486 l~~~L~~~--~~~~~~l~g~~~~~--~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~------------ 549 (618)
+.+.|.+. +.++..+.+++... .-...+..|.+|+.+|||.|++++.|+|+|+++.|...+...
T Consensus 496 ieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er 575 (730)
T COG1198 496 IEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASER 575 (730)
T ss_pred HHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHH
Confidence 44444443 56788888877653 356789999999999999999999999999999988655432
Q ss_pred CHHHHHHHHhhcccCCCCCeEEEEEecCcc
Q 007090 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (618)
Q Consensus 550 ~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d 579 (618)
..+.+.|..||+||.+ ++|.+++-.-.-+
T Consensus 576 ~fqll~QvaGRAgR~~-~~G~VvIQT~~P~ 604 (730)
T COG1198 576 TFQLLMQVAGRAGRAG-KPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHHHhhhccCC-CCCeEEEEeCCCC
Confidence 2466679999999997 5677777655444
No 135
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=2.9e-19 Score=193.81 Aligned_cols=316 Identities=21% Similarity=0.297 Sum_probs=206.8
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..+.+||..++.|+. ++-+.|+..+||.|||.+. +.++.+++... ...||. ||+||+..|.. |..++.+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K---~~~GP~-LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHK---QMQGPF-LIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHc---ccCCCe-EEeccccccCC-chhhcccc
Confidence 478899999999976 3357899999999999874 55666776542 344775 99999999885 89999999
Q ss_pred HhhcCceEEEEECCCChHHHH-HH-HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHh
Q 007090 322 AKSHGIRVSAVYGGMSKLDQF-KE-LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~-~~-l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~ 399 (618)
++ .+..+...|.......+ .. .....+|+++|++.++. .+..+.--++.++||||.|+|.+.. -.+...++.
T Consensus 467 aP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t 540 (1157)
T KOG0386|consen 467 AP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNT 540 (1157)
T ss_pred cc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhc
Confidence 76 45555444432221111 11 12458999999988865 1112222356799999999985421 122222221
Q ss_pred cCCCccEEEEeccccH----------------------------------------------------------------
Q 007090 400 IRPDRQTLLFSATMPR---------------------------------------------------------------- 415 (618)
Q Consensus 400 ~~~~~q~i~~SAT~~~---------------------------------------------------------------- 415 (618)
.-.....+++|+|+..
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 1111122333344310
Q ss_pred -----------HHH------------------------------------------HHHHHHcCCCeEEEEcCccccccc
Q 007090 416 -----------KVE------------------------------------------KLAREILSDPVRVTVGEVGMANED 442 (618)
Q Consensus 416 -----------~~~------------------------------------------~l~~~~~~~~~~i~~~~~~~~~~~ 442 (618)
.++ ...+++|..|....-- ...
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v-----e~~ 695 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV-----ENS 695 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh-----ccc
Confidence 000 0011111111111000 000
Q ss_pred eeEEEEE--cCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 007090 443 ITQVVHV--IPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519 (618)
Q Consensus 443 i~q~~~~--~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g 519 (618)
+.-.+.. +-....|+..|-..|.++. .+++||.||........+..+|.-.++....+.|.+...+|...+..|+.-
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 0000000 0012356666666665543 356999999999999999999999999999999999999999999999863
Q ss_pred C---ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCC-CeEEEEEecCc
Q 007090 520 V---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (618)
Q Consensus 520 ~---~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~-~g~~~~l~~~~ 578 (618)
. +.+|++|.+.+.|+|+..+++||.||..|||....|+..|++|.|++ ...++++++-.
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 3 45788999999999999999999999999999999999999999943 34555555543
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=4.2e-18 Score=187.27 Aligned_cols=274 Identities=18% Similarity=0.163 Sum_probs=180.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|++.|..+. +.-.+.-|..+.||.|||+++.+|+..+.+. |..|.||+++..||.+-++++..+...+|
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 4667776654 4445668999999999999999998655442 66789999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-----HHHHHc--cccccCceeEEEecchhhhh-cCC----------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-----IDMLKM--KALTMSRVTYLVLDEADRMF-DLG---------- 388 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-----~~~l~~--~~~~l~~~~~iIvDEah~~~-~~~---------- 388 (618)
+.+.++.++.+..+..... .|||+++|..-| .+.+.. .....+.+.++||||+|.++ +..
T Consensus 146 Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 9999988877765543322 489999999654 333211 12235678999999999762 100
Q ss_pred -----ChHHHHHHHHhcCC-------------------------------------------------------------
Q 007090 389 -----FEPQIRSIVGQIRP------------------------------------------------------------- 402 (618)
Q Consensus 389 -----~~~~i~~i~~~~~~------------------------------------------------------------- 402 (618)
....+..+...+..
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00000011111100
Q ss_pred -------------------------------------------------------CccEEEEeccccHHHHHHHHHHcCC
Q 007090 403 -------------------------------------------------------DRQTLLFSATMPRKVEKLAREILSD 427 (618)
Q Consensus 403 -------------------------------------------------------~~q~i~~SAT~~~~~~~l~~~~~~~ 427 (618)
-.++.+||+|......++...| +-
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY-~l 382 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIY-NL 382 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHh-CC
Confidence 0356677777765544444444 32
Q ss_pred CeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCH
Q 007090 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (618)
Q Consensus 428 ~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~ 506 (618)
.+...+...+. ........++.+...|+..+++.+..... +.||||.|.+....+.+++.|.+.|++..+++.....
T Consensus 383 ~vv~IPtnkp~--~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 EVVCIPTHRPM--LRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred CEEECCCCCCc--cceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 32222211111 11111123334556788888777665443 4599999999999999999999999999999986432
Q ss_pred HHHH-HHHHHHhcC-CceEEEecccccccCCcC
Q 007090 507 ASRM-EILQKFKSG-VYHVLIATDVAARGLDIK 537 (618)
Q Consensus 507 ~~r~-~~~~~F~~g-~~~VLVaT~~~~~Gldi~ 537 (618)
.+++ .++.. .| .-.|.|||++|+||.||.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2222 23322 34 346999999999999985
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=7.5e-17 Score=183.87 Aligned_cols=328 Identities=19% Similarity=0.231 Sum_probs=203.8
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH-HHHHHHH
Q 007090 247 KPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLETKKF 321 (618)
Q Consensus 247 ~~~~~Q~~~i~~----i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~-~~~~~~~ 321 (618)
.+++-|.+.+.. +..+..+++.|+||+|||++|++|++.+. .+.++||++||++|+.|+ .+.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 689999985544 34678899999999999999999988763 256799999999999999 4677777
Q ss_pred HhhcCceEEEEECCCChH-----HH------------------------------------------HHHH---------
Q 007090 322 AKSHGIRVSAVYGGMSKL-----DQ------------------------------------------FKEL--------- 345 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~-----~~------------------------------------------~~~l--------- 345 (618)
....++++..+.|+.+.- .+ |..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 777777777777654310 00 0000
Q ss_pred ---------------HcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-----C-------hHHH-----
Q 007090 346 ---------------KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----F-------EPQI----- 393 (618)
Q Consensus 346 ---------------~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-----~-------~~~i----- 393 (618)
...+||||++..-|...+.... .+..++++||||||++.+.. . ...+
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 1127899999988877664433 36789999999999874210 0 0000
Q ss_pred --------------------------------------------------------HHHHHh--------c---------
Q 007090 394 --------------------------------------------------------RSIVGQ--------I--------- 400 (618)
Q Consensus 394 --------------------------------------------------------~~i~~~--------~--------- 400 (618)
..++.. .
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 000000 0
Q ss_pred ----------------CCCccEEEEecccc--HHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEc----CCC-----
Q 007090 401 ----------------RPDRQTLLFSATMP--RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVI----PSD----- 453 (618)
Q Consensus 401 ----------------~~~~q~i~~SAT~~--~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~----~~~----- 453 (618)
+....+|++|||++ +.. .+ ...++-..... ........ .+...++ +..
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~-~~~~~~~~--~~~~~~i~~~~p~~~~~~~ 629 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLF-HKIEKDKK--QDQLVVVDQDMPLVTETSD 629 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccce-ecCCCChH--HccEEEeCCCCCCCCCCCh
Confidence 00136778888885 222 23 33333211000 00011111 1111121 111
Q ss_pred cccHHHHHHhcCCC-CCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 007090 454 AEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (618)
Q Consensus 454 ~~k~~~l~~~l~~~-~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 532 (618)
..-...+...+... ..+|++||+++|+..+..++..|....+.+ ...|... .+.++++.|+.+...||++|..+.+
T Consensus 630 ~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwE 706 (820)
T PRK07246 630 EVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhC
Confidence 11112233322111 247899999999999999999997665555 5555332 2566899999998999999999999
Q ss_pred cCCcCC--ccEEEEcCCCC----C--------------------------HHHHHHHHhhcccCCCCCeEEEEEecC-cc
Q 007090 533 GLDIKS--IKSVVNFDIAR----D--------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQ-KE 579 (618)
Q Consensus 533 Gldi~~--v~~VI~~~~p~----~--------------------------~~~y~Qr~GR~gR~g~~~g~~~~l~~~-~d 579 (618)
|+|+|+ ...||...+|. + +..+.|.+||.-|..+..|.++.+-.. ..
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~ 786 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILT 786 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccc
Confidence 999974 56677766653 2 122249999999988555755444443 25
Q ss_pred HHHHHHHHHHHHH
Q 007090 580 ARFAGELVNSLIA 592 (618)
Q Consensus 580 ~~~~~~i~~~l~~ 592 (618)
..+-..+.+.|..
T Consensus 787 k~Yg~~~l~sLP~ 799 (820)
T PRK07246 787 KSYGKQILASLAE 799 (820)
T ss_pred cHHHHHHHHhCCC
Confidence 5667777777654
No 138
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.78 E-value=4.6e-17 Score=166.56 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=127.5
Q ss_pred ccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhH
Q 007090 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTT 482 (618)
Q Consensus 404 ~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~ 482 (618)
.|+|+.|||+.+--.... -++-+.-.+...+..-+.+.- .........|+..+.... .+.++||-+-|+.+
T Consensus 387 ~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGLlDP~iev-----Rp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQS---GGNVVEQIIRPTGLLDPEIEV-----RPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhc---cCceeEEeecCCCCCCCceee-----ecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 599999999875422211 112333334444433333221 123345666666665533 35699999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC-----CCCHHHHHHH
Q 007090 483 VDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHVHR 557 (618)
Q Consensus 483 ~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~-----p~~~~~y~Qr 557 (618)
++.|.+||...|+++..+|++...-+|.+++..++.|.+.|||.-+.+-.|||+|.|..|.++|. ..|-.+.+|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875 4578899999
Q ss_pred HhhcccCCCCCeEEEEEecC
Q 007090 558 IGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 558 ~GR~gR~g~~~g~~~~l~~~ 577 (618)
+||+.|-- .|.++.+...
T Consensus 539 IGRAARN~--~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARNV--NGKVILYADK 556 (663)
T ss_pred HHHHhhcc--CCeEEEEchh
Confidence 99999965 6888888765
No 139
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=3.6e-18 Score=172.54 Aligned_cols=307 Identities=19% Similarity=0.233 Sum_probs=201.4
Q ss_pred CCCcHHHHHHHHHHhcC---CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~---~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
..++|+|..++..++.+ |..|+..|+|+|||++-+- +...+ ...+|+||.+...+.||...+..|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvT-Aa~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVT-AACTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeee-eeeee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 57899999999999944 6889999999999986332 22222 4559999999999999999999998
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--------cccccCceeEEEecchhhhhcCCChHHHH
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--------~~~~l~~~~~iIvDEah~~~~~~~~~~i~ 394 (618)
....-.++.+....... ...++.|+|+|+..+..--++ ..+.-..+.++|+||+|-+-..-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 65444555554443321 345799999999766432211 11223568999999999776655666665
Q ss_pred HHHHhcCCCccEEEEeccccHHHHHHHH-HHcCCCe----------------EEEEcCc----------c-cc-ccceeE
Q 007090 395 SIVGQIRPDRQTLLFSATMPRKVEKLAR-EILSDPV----------------RVTVGEV----------G-MA-NEDITQ 445 (618)
Q Consensus 395 ~i~~~~~~~~q~i~~SAT~~~~~~~l~~-~~~~~~~----------------~i~~~~~----------~-~~-~~~i~q 445 (618)
-+-.++ .+++|||+-++-..+.. .|+--|- .+.-..+ . .. +..-+.
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 555565 48999998543221100 0110010 0000000 0 00 000011
Q ss_pred EEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CceE
Q 007090 446 VVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV 523 (618)
Q Consensus 446 ~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~V 523 (618)
....+ .+.|+...--+|.-.. .+.+||||....-....++-.|.+ -.|+|.++|.+|+++++.|+.+ +++-
T Consensus 520 lLyvM--NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 520 LLYVM--NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred eeeec--CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 11112 2345444333332111 356999999988887777766643 4689999999999999999864 5677
Q ss_pred EEecccccccCCcCCccEEEEcCCCC-CHHHHHHHHhhcccCC-----CCCeEEEEEecCccH
Q 007090 524 LIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAG-----DKDGTAYTLVTQKEA 580 (618)
Q Consensus 524 LVaT~~~~~Gldi~~v~~VI~~~~p~-~~~~y~Qr~GR~gR~g-----~~~g~~~~l~~~~d~ 580 (618)
+.-..++.+.+|+|.++++|...... +-..-.||.||..|+. .-....|+|++.+-.
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 77788999999999999999876553 5567789999999875 123557788877643
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.2e-16 Score=175.36 Aligned_cols=274 Identities=20% Similarity=0.218 Sum_probs=179.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+++|..+--.+ +..-|..+.||-|||+++.+|+....+. |..|-||+++.-||..-++++..+...+|
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4566665554444 4557899999999999999998776554 66799999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-----HHHHHc--cccccCceeEEEecchhhhh-cC--------C--
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-----IDMLKM--KALTMSRVTYLVLDEADRMF-DL--------G-- 388 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-----~~~l~~--~~~~l~~~~~iIvDEah~~~-~~--------~-- 388 (618)
+.|.++.++....+.. -.-.|||+++|...| .+.+.. .....+.+.+.||||+|.++ +. +
T Consensus 155 Ltvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 155 LSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred CeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCC
Confidence 9999988776554432 233699999999887 444432 22345778999999999763 10 0
Q ss_pred -----ChHHHHHHHHhcCC--------------C----------------------------------------------
Q 007090 389 -----FEPQIRSIVGQIRP--------------D---------------------------------------------- 403 (618)
Q Consensus 389 -----~~~~i~~i~~~~~~--------------~---------------------------------------------- 403 (618)
.......+...+.. .
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 00111111111110 0
Q ss_pred --------------------------------------------------------------ccEEEEeccccHHHHHHH
Q 007090 404 --------------------------------------------------------------RQTLLFSATMPRKVEKLA 421 (618)
Q Consensus 404 --------------------------------------------------------------~q~i~~SAT~~~~~~~l~ 421 (618)
.++.+||+|......++.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 245566666554444444
Q ss_pred HHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q 007090 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAAL 500 (618)
Q Consensus 422 ~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l 500 (618)
..|-- ++...+...+ ..........+.+...|+..+++.+..... +.||||-+.|.+..+.++..|.+.|++..+|
T Consensus 393 ~iY~l-~Vv~IPTnkP--~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKL-EVTVIPTNRP--RRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCC-cEEEcCCCCC--eeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 33322 2222111111 111111112333456788888877765543 4599999999999999999999999999999
Q ss_pred eCCCCHHHHH-HHHHHHhcCC-ceEEEecccccccCCcC
Q 007090 501 HGDKDQASRM-EILQKFKSGV-YHVLIATDVAARGLDIK 537 (618)
Q Consensus 501 ~g~~~~~~r~-~~~~~F~~g~-~~VLVaT~~~~~Gldi~ 537 (618)
+..-...+++ .++.. .|+ -.|-|||++|+||.||.
T Consensus 470 NAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9863322333 23322 444 46999999999999986
No 141
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.74 E-value=6.5e-17 Score=174.78 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=110.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|..+|+..+..+=.+..+++.|||-+|||.+--- ++..++.. .+...||+++||+.|..|+...+........
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 57899999999999999999999999999974322 33344332 3466789999999999999877765542222
Q ss_pred ceE-EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc---cccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC
Q 007090 327 IRV-SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (618)
Q Consensus 327 ~~~-~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~---~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~ 402 (618)
+.. ..+.|.... ..+.-.-+|.|+|+-|+.+..++.. ...+..++.+||+||+|.+.+..-...+..++..+
T Consensus 585 ~~rg~sl~g~ltq--EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQ--EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhH--HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 221 111121111 1110011599999999999988876 45567899999999999988776444455555443
Q ss_pred CccEEEEeccccH
Q 007090 403 DRQTLLFSATMPR 415 (618)
Q Consensus 403 ~~q~i~~SAT~~~ 415 (618)
.+.++++|||+.+
T Consensus 661 ~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 PCPFLVLSATIGN 673 (1330)
T ss_pred CCCeeEEecccCC
Confidence 3569999999854
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.74 E-value=2.2e-15 Score=164.56 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=84.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc----CCceEEEecccccccCCc--------
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDI-------- 536 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~----g~~~VLVaT~~~~~Gldi-------- 536 (618)
..|++||.++++..+..++..|...--....+.|..+ .+...++.|+. |...||++|..+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3789999999999999999999764223455566443 35667888876 578999999999999999
Q ss_pred CC--ccEEEEcCCCCC-------------------------HHHHHHHHhhcccCCCC--CeEEEEEecCccHHHHHHHH
Q 007090 537 KS--IKSVVNFDIARD-------------------------MDMHVHRIGRTGRAGDK--DGTAYTLVTQKEARFAGELV 587 (618)
Q Consensus 537 ~~--v~~VI~~~~p~~-------------------------~~~y~Qr~GR~gR~g~~--~g~~~~l~~~~d~~~~~~i~ 587 (618)
|| +++||+..+|.. .-.+.|-+||.-|..+. .|.++++-..-...+-..+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 44 899998777732 12224999999998854 57666665553334444433
No 143
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=3.9e-17 Score=145.50 Aligned_cols=119 Identities=45% Similarity=0.718 Sum_probs=109.6
Q ss_pred ccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 007090 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (618)
Q Consensus 455 ~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~G 533 (618)
.|...+...+.... ..+++||||++...++.+++.|...+..+..+||.++..+|..++..|.+|...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67778877777654 46799999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEE
Q 007090 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (618)
Q Consensus 534 ldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l 574 (618)
+|+|++++||++++|++...|.|++||++|.|+ .|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~-~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ-KGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCC-CceEEeC
Confidence 999999999999999999999999999999994 6777653
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=1.2e-15 Score=177.27 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCC--ccEEEE
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS--IKSVVN 544 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~--~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~--v~~VI~ 544 (618)
.+|++|||++|+.....++..|..... ....+.-+++...|..+++.|+.+...||++|..+.+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 368999999999999999999976422 1222322333345788999999998899999999999999998 588998
Q ss_pred cCCCCC-H-----------------------------HHHHHHHhhcccCCCCCeEEEEEecC-ccHHHHHHHHHHHHH
Q 007090 545 FDIARD-M-----------------------------DMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIA 592 (618)
Q Consensus 545 ~~~p~~-~-----------------------------~~y~Qr~GR~gR~g~~~g~~~~l~~~-~d~~~~~~i~~~l~~ 592 (618)
..+|.. | ..+.|.+||.-|..+..|.++.+-.. ....+-..+.+.|..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP~ 909 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLPT 909 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCCC
Confidence 886651 1 12249999999998555654444443 356677777777654
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=3e-16 Score=161.08 Aligned_cols=277 Identities=23% Similarity=0.314 Sum_probs=182.7
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
+-++-+|||.||||. .+|.++.. ....++..|.|-||..+++.+... |+.|..+.|........
T Consensus 192 kIi~H~GPTNSGKTy----~ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTY----RALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD 255 (700)
T ss_pred eEEEEeCCCCCchhH----HHHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC
Confidence 346779999999994 35666543 445799999999999999888877 88888887765443221
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHH-HHHHHhcCCCccEEEEeccccHHHHHHH
Q 007090 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI-RSIVGQIRPDRQTLLFSATMPRKVEKLA 421 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i-~~i~~~~~~~~q~i~~SAT~~~~~~~l~ 421 (618)
. ...+..+=||.+.. . .-..+++.||||++.|-+...+-.+ +.++.......++++= |.+-.++
T Consensus 256 ~--~~~a~hvScTVEM~-------s-v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV 320 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMV-------S-VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLV 320 (700)
T ss_pred C--CCcccceEEEEEEe-------e-cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHH
Confidence 1 11255666665322 1 1246899999999999876543333 3444444444444432 2334455
Q ss_pred HHHcC---CCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCc-E
Q 007090 422 REILS---DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-A 497 (618)
Q Consensus 422 ~~~~~---~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~-~ 497 (618)
+.++. +.+.+. .|..+. +-.-...++..+... ..|.++| |-++.++-.+...+.+.|.. +
T Consensus 321 ~~i~k~TGd~vev~-------------~YeRl~-pL~v~~~~~~sl~nl-k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~ 384 (700)
T KOG0953|consen 321 RKILKMTGDDVEVR-------------EYERLS-PLVVEETALGSLSNL-KPGDCVV-AFSKKDIFTVKKKIEKAGNHKC 384 (700)
T ss_pred HHHHhhcCCeeEEE-------------eecccC-cceehhhhhhhhccC-CCCCeEE-EeehhhHHHHHHHHHHhcCcce
Confidence 55543 222221 122221 111222344444433 3455544 44677888889999887665 9
Q ss_pred EEEeCCCCHHHHHHHHHHHhc--CCceEEEecccccccCCcCCccEEEEcCCC---------CCHHHHHHHHhhcccCCC
Q 007090 498 AALHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIA---------RDMDMHVHRIGRTGRAGD 566 (618)
Q Consensus 498 ~~l~g~~~~~~r~~~~~~F~~--g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p---------~~~~~y~Qr~GR~gR~g~ 566 (618)
++|+|+++++.|..--..|++ +.++|||||++++.|+|+ +++.||+|++- -......|.+||+||.|.
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 999999999999999999987 899999999999999999 79999998864 356778899999999983
Q ss_pred C--CeEEEEEecCccHHHHHHHHH
Q 007090 567 K--DGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 567 ~--~g~~~~l~~~~d~~~~~~i~~ 588 (618)
+ .|.+.+|. .+|-..+.++++
T Consensus 464 ~~~~G~vTtl~-~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 464 KYPQGEVTTLH-SEDLKLLKRILK 486 (700)
T ss_pred CCcCceEEEee-HhhHHHHHHHHh
Confidence 2 35544444 344444444443
No 146
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=3.1e-16 Score=164.67 Aligned_cols=110 Identities=15% Similarity=0.275 Sum_probs=94.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc--CCce-EEEecccccccCCcCCccEEEEc
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS--GVYH-VLIATDVAARGLDIKSIKSVVNF 545 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~--g~~~-VLVaT~~~~~Gldi~~v~~VI~~ 545 (618)
.+.+++|...=......++..|.+.|+.+..+||.....+|..+++.|.. |..+ .||+-.+.+.|||+-+.+|+|++
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 34578888777778888999999999999999999999999999999964 4344 56677888899999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCCC-eEEEEEecCc
Q 007090 546 DIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK 578 (618)
Q Consensus 546 ~~p~~~~~y~Qr~GR~gR~g~~~-g~~~~l~~~~ 578 (618)
|+.|||+--.|...|..|.|++. -+.++|++..
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 99999999999999999999554 5566677764
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.70 E-value=3.8e-17 Score=174.40 Aligned_cols=358 Identities=18% Similarity=0.199 Sum_probs=208.0
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCe
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (618)
..|+.+.. .++..++.-..-.+|+|+|++|+...+.| ...=+++.+|+|||.+.+ -+...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------hhh
Confidence 44544433 45555555556678999999999998865 344566779999998643 3333332 256
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH-----------------------HHHHH--HcCCcEEEeC
Q 007090 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD-----------------------QFKEL--KAGCEIVIAT 355 (618)
Q Consensus 301 vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-----------------------~~~~l--~~~~dIiv~T 355 (618)
+|+|+|+..|..|..+++..-. ...++...++....... .+... ..+--||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 9999999999999876665542 23455555555432111 11111 1245699999
Q ss_pred hHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC-----CccEEEEeccccHH---HH---------
Q 007090 356 PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-----DRQTLLFSATMPRK---VE--------- 418 (618)
Q Consensus 356 p~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~-----~~q~i~~SAT~~~~---~~--------- 418 (618)
++.+..+-+.+...+..|++||+||||+.........=..-+.++.. ..+.+.||||+.-- ..
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 99999998888888999999999999985432211111111111111 12457888987311 00
Q ss_pred ---------------------HHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCccc---HHHHHHh---c-CCCC--
Q 007090 419 ---------------------KLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK---LPWLLEK---L-PGMI-- 468 (618)
Q Consensus 419 ---------------------~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k---~~~l~~~---l-~~~~-- 468 (618)
...+.++.+.-.+...-.........|....-.+..-. ...++.. | ++..
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 01112222211111000000000000100000000000 0011111 1 1100
Q ss_pred -------C----CCcEEEEcCChhHHHHHHHHHHh-------------CC--CcEEEEeCCCCHHHHHHHHHH---HhcC
Q 007090 469 -------D----DGDVLVFASKKTTVDEIESQLAQ-------------KG--FKAAALHGDKDQASRMEILQK---FKSG 519 (618)
Q Consensus 469 -------~----~~~vLVF~~~~~~~~~l~~~L~~-------------~~--~~~~~l~g~~~~~~r~~~~~~---F~~g 519 (618)
. -.+.+-||.+.+....++..+.+ .+ +.+..+.|.|...+|...... |...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 0 12468899888887777666543 13 345556689999998655543 3557
Q ss_pred CceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEec---------------CccHHHHH
Q 007090 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT---------------QKEARFAG 584 (618)
Q Consensus 520 ~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~---------------~~d~~~~~ 584 (618)
.++||--...+++|+|+|.++.||++++-.+..+.+|.+||+.|....+...|+++. ..+.....
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 788988889999999999999999999999999999999999996522223333322 23455566
Q ss_pred HHHHHHHHcC
Q 007090 585 ELVNSLIAAG 594 (618)
Q Consensus 585 ~i~~~l~~~~ 594 (618)
.+++.|+...
T Consensus 608 qVlnALRShD 617 (1518)
T COG4889 608 QVLKALRSHD 617 (1518)
T ss_pred HHHHHHHhcC
Confidence 7777775543
No 148
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=5.6e-17 Score=130.64 Aligned_cols=78 Identities=44% Similarity=0.695 Sum_probs=75.6
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC
Q 007090 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (618)
Q Consensus 488 ~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g 565 (618)
++|+..++.+..+||++++.+|..+++.|.+|...|||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468888999999999999999999999999999999999999999999999999999999999999999999999986
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=9.4e-16 Score=137.79 Aligned_cols=144 Identities=40% Similarity=0.548 Sum_probs=112.5
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
+++++.++||+|||.+++..+...... ...++++|++|++.++.|+.+.+..+... +..+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468999999999999877766665433 23578999999999999999999988765 67777777777666665
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.....+.+|+++|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567899999999999888766554566789999999999887665544333444456778899999996
No 150
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.68 E-value=8e-16 Score=165.37 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=97.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----------------------CCcEEEEeCCCCHHHHHHHHHHHhcC----CceE
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEILQKFKSG----VYHV 523 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----------------------~~~~~~l~g~~~~~~r~~~~~~F~~g----~~~V 523 (618)
+.++|||.++...++.|..+|... |.....|.|.....+|..+...|++- -...
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 358999999999999999999641 55688999999999999999999863 2347
Q ss_pred EEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCC-CCeEEEEEecCc--cHHHHHHHHH
Q 007090 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK--EARFAGELVN 588 (618)
Q Consensus 524 LVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~-~~g~~~~l~~~~--d~~~~~~i~~ 588 (618)
||+|.+++-|+|+-.++.||+||..|||.--+|.|=|+.|.|+ ++-.+|+|+... +.+.+.+=|.
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVT 1289 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVT 1289 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999994 445566666543 3344444333
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=3.4e-15 Score=165.74 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=101.2
Q ss_pred CCcccHHHHHHhcCCCCCC-CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 452 SDAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 452 ~~~~k~~~l~~~l~~~~~~-~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
+...|+..+++.+...... .||||-+.|.+..+.|++.|...|++..+|+......+-.-+-+.=+ .-.|-|||++|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCc
Confidence 4456788888777665444 49999999999999999999999999888887655433333322222 34699999999
Q ss_pred cccCCcC--------CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHH
Q 007090 531 ARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (618)
Q Consensus 531 ~~Gldi~--------~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~ 581 (618)
+||.||. |-=+||--..+.|..--.|-.||+||.| .+|.+..|+|-.|.-
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSLEDdL 744 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG-DPGSSQFYVSLEDNL 744 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC-CCCcceEEEEcccHH
Confidence 9999998 4458898889999999999999999999 589999999987643
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.65 E-value=1.2e-14 Score=171.17 Aligned_cols=325 Identities=22% Similarity=0.274 Sum_probs=208.2
Q ss_pred CCCcHHHHHHHHHHh-----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~-----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
..++++|..+++|+. .+.+.+++.++|.|||++.+..+ .+++... ....+.+||+||+ +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l-~~~~~~~---~~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALL-LSLLESI---KVYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHH-Hhhhhcc---cCCCCCeEEEecH-HHHHHHHHHHhh
Confidence 568899999999966 36788999999999998754443 3333221 1114568999997 566689999999
Q ss_pred HHhhcCceEEEEECCCC----hHHHHHHHHcC-----CcEEEeChHHHHHHH-HccccccCceeEEEecchhhhhcCCCh
Q 007090 321 FAKSHGIRVSAVYGGMS----KLDQFKELKAG-----CEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFE 390 (618)
Q Consensus 321 ~~~~~~~~~~~~~gg~~----~~~~~~~l~~~-----~dIiv~Tp~~L~~~l-~~~~~~l~~~~~iIvDEah~~~~~~~~ 390 (618)
+.+.... +...+|... .......+... .+++++|++.|.... ....+.-..+.++|+||+|++.+..-.
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 9874433 555555443 14444444432 799999999998842 112333446889999999997543211
Q ss_pred HHHHHHHHhcCCCccEEEEecccc-HHHHHH-------------------------------------------------
Q 007090 391 PQIRSIVGQIRPDRQTLLFSATMP-RKVEKL------------------------------------------------- 420 (618)
Q Consensus 391 ~~i~~i~~~~~~~~q~i~~SAT~~-~~~~~l------------------------------------------------- 420 (618)
....+. .++...+ +.+|+||- ..+.++
T Consensus 491 -~~~~l~-~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 491 -EGKALQ-FLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred -HHHHHH-HHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 111111 1111111 33333330 000000
Q ss_pred -HHH----------------------------------------------------------------------------
Q 007090 421 -ARE---------------------------------------------------------------------------- 423 (618)
Q Consensus 421 -~~~---------------------------------------------------------------------------- 423 (618)
+..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 000
Q ss_pred ---HcCCCeEEEEc-Ccccccc--------ceeEEEEEcCCCc-ccHHHHHHhc-CCCCCCC---cEEEEcCChhHHHHH
Q 007090 424 ---ILSDPVRVTVG-EVGMANE--------DITQVVHVIPSDA-EKLPWLLEKL-PGMIDDG---DVLVFASKKTTVDEI 486 (618)
Q Consensus 424 ---~~~~~~~i~~~-~~~~~~~--------~i~q~~~~~~~~~-~k~~~l~~~l-~~~~~~~---~vLVF~~~~~~~~~l 486 (618)
+|..|..+... ....... ............. .|...+.+++ ......+ ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 00000000000 0000000 0000000000011 5666676667 4444444 799999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC--CceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccC
Q 007090 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (618)
Q Consensus 487 ~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g--~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~ 564 (618)
..+|...++.+..++|.++...|...+..|.++ ...+|++|.+++.|+|+.++++||+||++||+....|+..|++|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999998999999999999999999999986 456777889999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEEecCcc
Q 007090 565 GDK-DGTAYTLVTQKE 579 (618)
Q Consensus 565 g~~-~g~~~~l~~~~d 579 (618)
|++ .-.+|.+++...
T Consensus 808 gQ~~~v~v~r~i~~~t 823 (866)
T COG0553 808 GQKRPVKVYRLITRGT 823 (866)
T ss_pred cCcceeEEEEeecCCc
Confidence 944 456777777654
No 153
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=3e-15 Score=153.44 Aligned_cols=346 Identities=12% Similarity=0.054 Sum_probs=229.6
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 241 SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 241 ~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
.++.-.....+|..++..+.+|+.+++.-.|.+||.++|.+.+.......+ ....+++.|+.++++.-.+-+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEE
Confidence 344456678999999999999999999999999999999888877765543 34468889999888643221110
Q ss_pred H---HhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccccc----CceeEEEecchhhhhcCCChHH-
Q 007090 321 F---AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTM----SRVTYLVLDEADRMFDLGFEPQ- 392 (618)
Q Consensus 321 ~---~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l----~~~~~iIvDEah~~~~~~~~~~- 392 (618)
. .+....-++-.+.+.+.+....-.+.+..++++.|......+-.+..+. -...++++||+|...-. |..+
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~ 432 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALA 432 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHH
Confidence 0 0011223445566666666666667789999999988876554433322 23457899999965432 2222
Q ss_pred ---HHHHHHhc-----CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC--------ccc
Q 007090 393 ---IRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD--------AEK 456 (618)
Q Consensus 393 ---i~~i~~~~-----~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~--------~~k 456 (618)
++.++..+ ..+.|++-.|||+...++.....+.-+-+.......... ..+..+..-+.. ..+
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs--~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS--SEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC--ccceEEEeCCCCCCcchhhhhhH
Confidence 33333332 346789999999987766554444444443333222211 122333222211 112
Q ss_pred HHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHh----CCC----cEEEEeCCCCHHHHHHHHHHHhcCCceEEEec
Q 007090 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ----KGF----KAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (618)
Q Consensus 457 ~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~----~~~----~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT 527 (618)
......++.+.. .+-++|-||+++.-|+.+....+. .+. .+..+.|+...++|..+....-.|+..-+|+|
T Consensus 511 i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 222222222222 245899999999998877655443 221 35678899999999999999999999999999
Q ss_pred ccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEE--ecCccHHHHHHHHHHHHHcCCC
Q 007090 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL--VTQKEARFAGELVNSLIAAGQN 596 (618)
Q Consensus 528 ~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l--~~~~d~~~~~~i~~~l~~~~~~ 596 (618)
++++-|+||.+++.|++.+.|.++..+.|..||+||.. ++..++.+ ..+-|..++..-...+...+.+
T Consensus 591 NALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN-k~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 591 NALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN-KPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred chhhhccccccceeEEEccCchhHHHHHHHhccccccC-CCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 99999999999999999999999999999999999987 44444433 3455666666555555544433
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.63 E-value=6e-14 Score=159.17 Aligned_cols=124 Identities=22% Similarity=0.304 Sum_probs=89.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHHhcCCc-eEEEecccccccCCcCC--ccEEEEc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKS--IKSVVNF 545 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~-~~~l~g~~~~~~r~~~~~~F~~g~~-~VLVaT~~~~~Gldi~~--v~~VI~~ 545 (618)
++++|||++++..+..+++.|...... ....+|..+ +...++.|..+.- .++|+|..+++|+|+++ .+.||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 679999999999999999999876542 445555544 4477888877655 89999999999999998 5889988
Q ss_pred CCCCC------------------------------HHHHHHHHhhcccCCCCCeEEEEEecCccH-HHHHHHHHHHHHcC
Q 007090 546 DIARD------------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEA-RFAGELVNSLIAAG 594 (618)
Q Consensus 546 ~~p~~------------------------------~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~-~~~~~i~~~l~~~~ 594 (618)
+.|.- +....|.+||+-|.-+..|.++.+-..-.. .+-..+.+.|....
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~~ 635 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPFP 635 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCCc
Confidence 87762 223359999999976555666666554433 35555555555444
Q ss_pred CC
Q 007090 595 QN 596 (618)
Q Consensus 595 ~~ 596 (618)
..
T Consensus 636 ~~ 637 (654)
T COG1199 636 KS 637 (654)
T ss_pred cc
Confidence 33
No 155
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=3.5e-15 Score=141.11 Aligned_cols=153 Identities=23% Similarity=0.176 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 247 KPTSIQCQALPIILS-------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~-------~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
+|+++|.+++..+.. ++.+++.++||+|||.+++..+.... . ++||++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999988883 68999999999999988665444332 1 69999999999999999997
Q ss_pred HHHhhcCceEEE-----------EECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-----------ccccCceeEEE
Q 007090 320 KFAKSHGIRVSA-----------VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----------ALTMSRVTYLV 377 (618)
Q Consensus 320 ~~~~~~~~~~~~-----------~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-----------~~~l~~~~~iI 377 (618)
.+.......... ..................+++++|...|....... ......+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665421111000 00111111111122346789999999998876531 12345688999
Q ss_pred ecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 378 vDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
+||||++....- ...++. .+...+|+|||||.+
T Consensus 152 ~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDSS---YREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCccC
Confidence 999998664321 344444 566779999999864
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=6.4e-13 Score=151.00 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=60.8
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 244 GYEKPTSIQCQALPII----LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i----~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
.|..++|.|.+.+..+ ..+.++++.+|||+|||++.+.|+|.+....+ ..+++++++.|..-..|..++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 3566799999888664 47889999999999999999999998875432 34789999999999999999998
Q ss_pred HHH
Q 007090 320 KFA 322 (618)
Q Consensus 320 ~~~ 322 (618)
+..
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 853
No 157
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.58 E-value=1.2e-12 Score=147.73 Aligned_cols=118 Identities=22% Similarity=0.342 Sum_probs=84.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHh----cCCceEEEecccccccCCcCC--ccEE
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFK----SGVYHVLIATDVAARGLDIKS--IKSV 542 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~----~g~~~VLVaT~~~~~Gldi~~--v~~V 542 (618)
.+++|||++|+..++.++..|... +.. ..++|.. .+..+++.|+ .|...||++|..+.+|+|+|| +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 567999999999999999999753 333 4456642 4667776665 477889999999999999998 7899
Q ss_pred EEcCCCC----CHH--------------------------HHHHHHhhcccCCCCCeEEEEEecC-ccHHHHHHHHHHHH
Q 007090 543 VNFDIAR----DMD--------------------------MHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLI 591 (618)
Q Consensus 543 I~~~~p~----~~~--------------------------~y~Qr~GR~gR~g~~~g~~~~l~~~-~d~~~~~~i~~~l~ 591 (618)
|+..+|. ++. .+.|.+||.-|..+..|.++.+-.. ....+-..+++.|.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhCC
Confidence 9888764 221 1239999999987545654444333 24566677766654
No 158
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.56 E-value=1.7e-14 Score=117.01 Aligned_cols=81 Identities=46% Similarity=0.724 Sum_probs=77.5
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccC
Q 007090 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (618)
Q Consensus 485 ~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~ 564 (618)
.++..|...++.+..+||.++..+|..++..|..|...|||+|+++++|+|++.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007090 565 G 565 (618)
Q Consensus 565 g 565 (618)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.49 E-value=2.3e-12 Score=144.28 Aligned_cols=308 Identities=19% Similarity=0.164 Sum_probs=176.2
Q ss_pred CcHHHHHHHHHHhcC--------CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 248 PTSIQCQALPIILSG--------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~--------~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
-..+|-.|+..+..- -=++-.|.||||||++= .-++..+.. ...|.+..|..-.|.|--|.=..++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd-----~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD-----DKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC-----CCCCceEEEEccccceeccchHHHH
Confidence 357899999887642 22466889999999852 223333322 2345677777777888777777776
Q ss_pred HHHhhcCceEEEEECCCChHHHHH-------------------------------------------HHHc--------C
Q 007090 320 KFAKSHGIRVSAVYGGMSKLDQFK-------------------------------------------ELKA--------G 348 (618)
Q Consensus 320 ~~~~~~~~~~~~~~gg~~~~~~~~-------------------------------------------~l~~--------~ 348 (618)
+-.+...-...+++||....+.+. .+.. .
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 655443334444455433222111 0000 1
Q ss_pred CcEEEeChHHHHHHHHcc---ccccC----ceeEEEecchhhhhcCCChHHHHHHHHhc-CCCccEEEEeccccHHHHHH
Q 007090 349 CEIVIATPGRLIDMLKMK---ALTMS----RVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKL 420 (618)
Q Consensus 349 ~dIiv~Tp~~L~~~l~~~---~~~l~----~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~l 420 (618)
+.|+|||+..++...... ...+. .-+.|||||+|.+-... ...+..++.-+ .....+++||||+|+.+...
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 679999999998876321 11111 13579999999643221 22233333321 23577999999999876443
Q ss_pred -HHHH----------cCC---CeEEEE---cCccccc--------------------------cceeE--EEEEcCCCcc
Q 007090 421 -AREI----------LSD---PVRVTV---GEVGMAN--------------------------EDITQ--VVHVIPSDAE 455 (618)
Q Consensus 421 -~~~~----------~~~---~~~i~~---~~~~~~~--------------------------~~i~q--~~~~~~~~~~ 455 (618)
...| ++. ++.|.. ....... ..+.. ....++....
T Consensus 642 L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~ 721 (1110)
T TIGR02562 642 LFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPR 721 (1110)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCccc
Confidence 2222 222 221111 0000000 00111 1111221111
Q ss_pred ----cHHHHHHhcCC-----------CCC-CC-c---EEEEcCChhHHHHHHHHHHhC------CCcEEEEeCCCCHHHH
Q 007090 456 ----KLPWLLEKLPG-----------MID-DG-D---VLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASR 509 (618)
Q Consensus 456 ----k~~~l~~~l~~-----------~~~-~~-~---vLVF~~~~~~~~~l~~~L~~~------~~~~~~l~g~~~~~~r 509 (618)
....+.+.+.+ .-. .| + -||-++++..+..++..|... .+.+.++|+......|
T Consensus 722 ~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~R 801 (1110)
T TIGR02562 722 ENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLR 801 (1110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHH
Confidence 11122222210 101 22 2 378888888888888888654 3458899999877777
Q ss_pred HHHHHHH----------------------hc----CCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhccc
Q 007090 510 MEILQKF----------------------KS----GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR 563 (618)
Q Consensus 510 ~~~~~~F----------------------~~----g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR 563 (618)
..+.+.. .+ +...|+|+|++++.|+|+. .+ +.|..|.++...+||+||+.|
T Consensus 802 s~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd--~~~~~~~~~~sliQ~aGR~~R 878 (1110)
T TIGR02562 802 SYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YD--WAIADPSSMRSIIQLAGRVNR 878 (1110)
T ss_pred HHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CC--eeeeccCcHHHHHHHhhcccc
Confidence 7665543 12 4668999999999999993 33 344557789999999999999
Q ss_pred CC
Q 007090 564 AG 565 (618)
Q Consensus 564 ~g 565 (618)
.|
T Consensus 879 ~~ 880 (1110)
T TIGR02562 879 HR 880 (1110)
T ss_pred cc
Confidence 88
No 160
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=3.1e-12 Score=142.28 Aligned_cols=311 Identities=17% Similarity=0.234 Sum_probs=202.6
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH-HHHhh
Q 007090 247 KPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK-KFAKS 324 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~-~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~-~~~~~ 324 (618)
...|+|.+.++.+. +++++++++|+|||||.++-++++. ..+..++++++|.-+.+..++..+. +|...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 34789999998887 4578999999999999987766654 2345679999999998887776555 45555
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC------ChHHHHHHHH
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG------FEPQIRSIVG 398 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~------~~~~i~~i~~ 398 (618)
.|..++.+.|..+..- ++....+|+|+||+++-.+ . ....+++.|.||+|.+.... ... ++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 6777777777655432 2445579999999998665 2 56788999999999876321 112 455556
Q ss_pred hcCCCccEEEEeccccHHHHHHHHHHcCC-CeEEEEcCccccccceeEEEEEcCCC--cccHH----HHHHhcCC-CCCC
Q 007090 399 QIRPDRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSD--AEKLP----WLLEKLPG-MIDD 470 (618)
Q Consensus 399 ~~~~~~q~i~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~q~~~~~~~~--~~k~~----~l~~~l~~-~~~~ 470 (618)
.+-+..+++.+|..+.+. ..+ ++. +-.+.............-.+..+... ..... .....+.. ...+
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~----ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDL----IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhh----ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 666677788888877532 222 221 11111111111111111111222111 11111 11122221 1245
Q ss_pred CcEEEEcCChhHHHHHHHHHHhC----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc
Q 007090 471 GDVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~~~----------------------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~ 528 (618)
.+.+||+++++++..++.-|-.. .++.++=|.+++..+..-+...|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 68999999999998877654321 22333339999999999999999999999999876
Q ss_pred cccccCCcCCccEEE-----EcC------CCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHH
Q 007090 529 VAARGLDIKSIKSVV-----NFD------IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (618)
Q Consensus 529 ~~~~Gldi~~v~~VI-----~~~------~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i 586 (618)
. ..|+-... ..|| .|| .+..+....|+.|++.|+ |.|+.+....+..+++..
T Consensus 1440 ~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~----~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1440 D-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA----GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred c-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC----ccEEEEecCchHHHHHHh
Confidence 6 67776654 3444 233 345688999999999985 478888888877766543
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.40 E-value=2.6e-11 Score=132.70 Aligned_cols=289 Identities=16% Similarity=0.196 Sum_probs=180.3
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
.-.++.+|+|+|||.+. +..+...++. ...++|+|..++.|+.++...++.. ++.-...|.......
T Consensus 50 ~V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~~-- 116 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDYI-- 116 (824)
T ss_pred CeEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeecccccc--
Confidence 34688999999999863 4444444332 2667999999999999998877765 221111222211110
Q ss_pred HHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCCh------HHHHH-HHHhcCCCccEEEEecccc
Q 007090 343 KELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE------PQIRS-IVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 343 ~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~------~~i~~-i~~~~~~~~q~i~~SAT~~ 414 (618)
+. ...+-+++..+.|.++. ...+.++++|||||+-..+..-|. ..+.. +...++....+|++-|++.
T Consensus 117 --i~~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 117 --IDGRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred --ccccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 11 12567777877776653 224667999999999966543222 22222 3344567788999999999
Q ss_pred HHHHHHHHHHcCC-CeEEEEcCccccccceeEEEEE--cC--------------------------------CCcccHHH
Q 007090 415 RKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHV--IP--------------------------------SDAEKLPW 459 (618)
Q Consensus 415 ~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~q~~~~--~~--------------------------------~~~~k~~~ 459 (618)
...-+++..+.++ ++.+.++.-......-++-+.. +. ........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9988888887654 4444443311111100110000 00 00111222
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCc
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v 539 (618)
+..++.....+.+|-||+++...++.+++..+..+.++..++|..+..+.+. =++++|+++|.++..|+++...
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~------W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVES------WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccccc------ccceeEEEEeceEEEEeccchh
Confidence 2333333334568999999999999999999999999999998777653322 2579999999999999998753
Q ss_pred --cEEEEcCCC--C--CHHHHHHHHhhcccCCCCCeEEEEEecC
Q 007090 540 --KSVVNFDIA--R--DMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 540 --~~VI~~~~p--~--~~~~y~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
+.|+.|=-| . +..+..|++||+-... ....+..+..
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~--~~ei~v~~d~ 387 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL--DNEIYVYIDA 387 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhhc--cCeEEEEEec
Confidence 445555222 2 2445789999998776 3455555554
No 162
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.40 E-value=4.3e-11 Score=132.84 Aligned_cols=277 Identities=9% Similarity=0.124 Sum_probs=160.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---HHHHHc
Q 007090 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA 347 (618)
Q Consensus 271 TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~ 347 (618)
+|||||.+|+-.+ ...+.. |..+|||+|...|..|+...++...+ +..+..++++.+..+. |..+..
T Consensus 169 ~GSGKTevyl~~i-~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 169 PGEDWARRLAAAA-AATLRA-------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCCcHHHHHHHHH-HHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 5999999875544 444432 77799999999999999999887753 2567778887776544 444555
Q ss_pred C-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhh--cC-CChHHHH--HHHHhcCCCccEEEEeccccHHHHHHH
Q 007090 348 G-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF--DL-GFEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLA 421 (618)
Q Consensus 348 ~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~--~~-~~~~~i~--~i~~~~~~~~q~i~~SAT~~~~~~~l~ 421 (618)
| ..|+|+|-..+ ...+.++.+|||||=|.-. +. ....+.+ .++..-..+..+|+-|||++-+....+
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 5 78999995222 3467889999999999432 11 1122222 223333456789999999976544333
Q ss_pred HHHcCCCeEEEEcCccccccceeEEEEE---cC-CCcc----cHHHHHHhcCCCCCCCcEEEEcCChhHHHH--------
Q 007090 422 REILSDPVRVTVGEVGMANEDITQVVHV---IP-SDAE----KLPWLLEKLPGMIDDGDVLVFASKKTTVDE-------- 485 (618)
Q Consensus 422 ~~~~~~~~~i~~~~~~~~~~~i~q~~~~---~~-~~~~----k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~-------- 485 (618)
..-....+...-.......+.+.-.-.. .. .... --..+++.+.+.+..|++|||+|.+-.+-.
T Consensus 312 ~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~ 391 (665)
T PRK14873 312 ESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRT 391 (665)
T ss_pred hcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcC
Confidence 2210000000000001111111111100 00 0000 112355555555556699999988765522
Q ss_pred ---------------------------------------------------HHHHHHhC--CCcEEEEeCCCCHHHHHHH
Q 007090 486 ---------------------------------------------------IESQLAQK--GFKAAALHGDKDQASRMEI 512 (618)
Q Consensus 486 ---------------------------------------------------l~~~L~~~--~~~~~~l~g~~~~~~r~~~ 512 (618)
+.+.|.+. +.++..+. +..+
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d-------~d~~ 464 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG-------GDQV 464 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-------hHHH
Confidence 22222111 12222222 2346
Q ss_pred HHHHhcCCceEEEecc----cccccCCcCCccEEEEcCCCC------------CHHHHHHHHhhcccCCCCCeEEEEEec
Q 007090 513 LQKFKSGVYHVLIATD----VAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (618)
Q Consensus 513 ~~~F~~g~~~VLVaT~----~~~~Gldi~~v~~VI~~~~p~------------~~~~y~Qr~GR~gR~g~~~g~~~~l~~ 576 (618)
++.|. ++..|||+|. ++. .++..|+..|... ....+.|.+||+||.. +.|.++....
T Consensus 465 l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~-~~G~V~iq~~ 537 (665)
T PRK14873 465 VDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA-DGGQVVVVAE 537 (665)
T ss_pred HHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC-CCCEEEEEeC
Confidence 77776 5899999998 555 3567777655332 2455579999999977 5788888754
Q ss_pred Cc
Q 007090 577 QK 578 (618)
Q Consensus 577 ~~ 578 (618)
+.
T Consensus 538 p~ 539 (665)
T PRK14873 538 SS 539 (665)
T ss_pred CC
Confidence 43
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.36 E-value=1.8e-11 Score=134.84 Aligned_cols=317 Identities=20% Similarity=0.210 Sum_probs=196.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.++|+-.|.+-.+..+..-+..+.||-|||++..+|+....+. |..|.+++..--||..-.+++..+...+|
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 3445555566666666778999999999999999998655433 56688999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH-HHHH------ccccccCceeEEEecchhhhh----------cC--
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLK------MKALTMSRVTYLVLDEADRMF----------DL-- 387 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~-~~l~------~~~~~l~~~~~iIvDEah~~~----------~~-- 387 (618)
+.+.+...+.+..+....+ .|||..+|...|- +.+. .....+....+.|+||+|.++ .+
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9999999998776665444 3899999986652 2221 123345568899999999753 11
Q ss_pred ----CChHHHHHHHHhcCCC--------ccEE------------------------------------------------
Q 007090 388 ----GFEPQIRSIVGQIRPD--------RQTL------------------------------------------------ 407 (618)
Q Consensus 388 ----~~~~~i~~i~~~~~~~--------~q~i------------------------------------------------ 407 (618)
.....+..+...+... .+.+
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1122223333222211 0111
Q ss_pred -------------------------------------------------------------EEeccccHHHHHHHHHHcC
Q 007090 408 -------------------------------------------------------------LFSATMPRKVEKLAREILS 426 (618)
Q Consensus 408 -------------------------------------------------------------~~SAT~~~~~~~l~~~~~~ 426 (618)
+||+|...+...+...|..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 1111111111111111100
Q ss_pred CCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 427 DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 427 ~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
-+.+.+. ......+...-..+.+...|+..++..+.... .+.||||-..+++..+.+.+.|.+.|++..+|+..-.
T Consensus 388 -~vv~iPT--nrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 388 -DVVVIPT--NRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred -ceeeccC--CCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 0110000 00000111111222234567777777776544 3559999999999999999999999999988887665
Q ss_pred HHHHHHHHHHHhcCCceEEEecccccccCCcCCccE-----------EEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEE
Q 007090 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS-----------VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (618)
Q Consensus 506 ~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~-----------VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l 574 (618)
. +..-+-.+.-..--|-|||++|+||-||.--.. ||--.-..|-.--.|.-||+||.| .+|....+
T Consensus 465 ~--~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~ 541 (822)
T COG0653 465 A--REAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFY 541 (822)
T ss_pred H--HHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhh
Confidence 3 333333333223458999999999999974332 332222223333348889999999 57887777
Q ss_pred ecCcc
Q 007090 575 VTQKE 579 (618)
Q Consensus 575 ~~~~d 579 (618)
+|-.|
T Consensus 542 lSleD 546 (822)
T COG0653 542 LSLED 546 (822)
T ss_pred hhhHH
Confidence 77654
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.34 E-value=7.8e-12 Score=128.02 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=94.9
Q ss_pred HHHHHHHHHh-------------cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHH
Q 007090 251 IQCQALPIIL-------------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (618)
Q Consensus 251 ~Q~~~i~~i~-------------~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~ 317 (618)
+|..++.+++ ..+.+|++.++|+|||++.+.. +.++...... .....+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~-~~~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIAL-ISYLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHH-HHHHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhh-hhhhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5888888873 4478999999999999875444 3344332111 111248999999 777899999
Q ss_pred HHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH---ccccccCceeEEEecchhhhhcCCChHHHH
Q 007090 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK---MKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~---~~~~~l~~~~~iIvDEah~~~~~~~~~~i~ 394 (618)
+.+++....+++....|...............+++|+|+..+..... ...+.-..+++|||||+|.+.+. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccccc
Confidence 99998655666665555541222222233458999999999981110 01112235899999999998544 33444
Q ss_pred HHHHhcCCCccEEEEeccccH
Q 007090 395 SIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 395 ~i~~~~~~~~q~i~~SAT~~~ 415 (618)
..+..+. ....+++|||+..
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SS
T ss_pred ccccccc-cceEEeecccccc
Confidence 4445465 6678899999743
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.31 E-value=3.3e-10 Score=131.36 Aligned_cols=298 Identities=16% Similarity=0.186 Sum_probs=170.7
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
+..+++.-||||||++.+.. ...+... ...|+|++|+-++.|-.|+.+++..+........ ...+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 46899999999999864332 2333333 4689999999999999999999999976432211 344455555
Q ss_pred HHHHcC-CcEEEeChHHHHHHHHccc--cccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHH
Q 007090 343 KELKAG-CEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK 419 (618)
Q Consensus 343 ~~l~~~-~dIiv~Tp~~L~~~l~~~~--~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 419 (618)
..+..+ ..|||||-++|...+.... ..-.+-=+||+||||| .+++.....+-..+ +....++||+||--.-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHR---SQ~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHR---SQYGELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhh---ccccHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 555544 4899999999998875541 1122233789999999 44554444444444 347799999998432222
Q ss_pred H-HHHHcCCCeEEEEcCccccccce-eEEEEE---cCC---------------------------------------Ccc
Q 007090 420 L-AREILSDPVRVTVGEVGMANEDI-TQVVHV---IPS---------------------------------------DAE 455 (618)
Q Consensus 420 l-~~~~~~~~~~i~~~~~~~~~~~i-~q~~~~---~~~---------------------------------------~~~ 455 (618)
. ....+++.+..+.-.....-..+ ...+.. +.. ...
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 2 13333333333222111100000 000000 000 000
Q ss_pred c----HHHHHHhcCC-CCCCCcEEEEcCChhHHHHHHHHHHhC-----------C--------Cc--EEEE--eCCCCHH
Q 007090 456 K----LPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-----------G--------FK--AAAL--HGDKDQA 507 (618)
Q Consensus 456 k----~~~l~~~l~~-~~~~~~vLVF~~~~~~~~~l~~~L~~~-----------~--------~~--~~~l--~g~~~~~ 507 (618)
+ ...+...... ....+++++.++++..+..+.+.+... + +. .... |... ..
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HH
Confidence 0 0111222222 223467888888877555555554332 0 00 0000 1111 12
Q ss_pred HHHHHHHH--HhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC-C-CC-eEEEEEec
Q 007090 508 SRMEILQK--FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-D-KD-GTAYTLVT 576 (618)
Q Consensus 508 ~r~~~~~~--F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g-~-~~-g~~~~l~~ 576 (618)
.+...... ......++||.++++-+|+|.|.++++.. |-|.-....+|.+.|+.|.- . ++ |.++.+..
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 23333334 34567899999999999999998877764 44566778899999999975 2 23 44444444
No 166
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.28 E-value=2.6e-11 Score=130.94 Aligned_cols=312 Identities=18% Similarity=0.219 Sum_probs=193.0
Q ss_pred HHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH-HhhcCceEEEE
Q 007090 254 QALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVSAV 332 (618)
Q Consensus 254 ~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~-~~~~~~~~~~~ 332 (618)
..+..+..++-+++-++||+|||.++.--+|..++.... .-...+.+..|||..+..+++.+.+- +...+-.|++.
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 334455677888999999999999877777777665432 22344778899999988887665543 22223333332
Q ss_pred ECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh-hcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 333 YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 333 ~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~-~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
....+... ...--|.+||.+.+++++... +..+.++|+||.|.. .+..|...+..-+..+-++...++|||
T Consensus 462 vRf~Sa~p-----rpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 462 VRFDSATP-----RPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred cccccccc-----ccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 22221111 011358899999999988654 446789999999953 223344444443333445555666666
Q ss_pred cccHH--------------------HHHHHHHHcCCCeEEEEcCcccccc------------------ceeEEEEEc---
Q 007090 412 TMPRK--------------------VEKLAREILSDPVRVTVGEVGMANE------------------DITQVVHVI--- 450 (618)
Q Consensus 412 T~~~~--------------------~~~l~~~~~~~~~~i~~~~~~~~~~------------------~i~q~~~~~--- 450 (618)
|+... ++.+...++..+............. ++...-.+.
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 65432 1222222222221111111100000 000000000
Q ss_pred ------CCC----cccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHH
Q 007090 451 ------PSD----AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEIL 513 (618)
Q Consensus 451 ------~~~----~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~-------~~~~~~l~g~~~~~~r~~~~ 513 (618)
.+. ..-...++..+....-.+-|+||.+.-..+..|.++|... .+....+|+.....+..+++
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 000 0111222333332223568999999999999999998654 46789999999988999999
Q ss_pred HHHhcCCceEEEecccccccCCcCCccEEEEcCC------------------CCCHHHHHHHHhhcccCCCCCeEEEEEe
Q 007090 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (618)
Q Consensus 514 ~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~------------------p~~~~~y~Qr~GR~gR~g~~~g~~~~l~ 575 (618)
+....|..+++++|.++...+.|.++..||.... +.+....+||.||+||.- +|.|+++.
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR--~G~~f~lc 771 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR--PGFCFHLC 771 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec--cccccccc
Confidence 9999999999999999999999999888874331 224455679999999975 79999988
Q ss_pred cCc
Q 007090 576 TQK 578 (618)
Q Consensus 576 ~~~ 578 (618)
+..
T Consensus 772 s~a 774 (1282)
T KOG0921|consen 772 SRA 774 (1282)
T ss_pred HHH
Confidence 753
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.19 E-value=4.5e-11 Score=104.44 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (618)
|+-.++-..+|+|||.-.+.-++...+.. +.++|||.|||.++..+.+.++.. .+++.. .....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~----~~~~~t--~~~~~--- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL----PVRFHT--NARMR--- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS----SEEEES--TTSS----
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC----CcccCc--eeeec---
Confidence 34457888999999986554455555443 678999999999999887666433 333321 11111
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC--CCccEEEEeccccHH
Q 007090 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRK 416 (618)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~--~~~q~i~~SAT~~~~ 416 (618)
....+.-|-++|+..+...+.. ...+..+++||+||||-+-... -..+..+..+. ....+|++|||+|-.
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred --cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 2345677899999999888755 5557899999999999622111 11112222222 335799999999854
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.16 E-value=1.6e-09 Score=115.46 Aligned_cols=107 Identities=24% Similarity=0.366 Sum_probs=90.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhC------------------CCcEEEEeCCCCHHHHHHHHHHHhcCC--c-eEEEeccc
Q 007090 471 GDVLVFASKKTTVDEIESQLAQK------------------GFKAAALHGDKDQASRMEILQKFKSGV--Y-HVLIATDV 529 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~~~------------------~~~~~~l~g~~~~~~r~~~~~~F~~g~--~-~VLVaT~~ 529 (618)
.++|||.......+.|...|.+. ..+...+.|.++..+|.+.+.+|+.-. . -+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 48999999999999999999763 235668899999999999999998632 2 57889999
Q ss_pred ccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCC-CCeEEEEEecC
Q 007090 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQ 577 (618)
Q Consensus 530 ~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~-~~g~~~~l~~~ 577 (618)
...|+|+-+.+.+|.|+..|++---.|.+-|+.|.|+ ++-.+|+++..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999999999999999999999999999999994 44555666544
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.04 E-value=2.8e-09 Score=107.85 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.1
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 247 ~~~~~Q~~~i----~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|+|.|.+.+ ..+..+.++++.+|||+|||+++++|++.++...... ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999944 5566889999999999999999999999887653211 02347999999999998887777765
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.04 E-value=2.8e-09 Score=107.85 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.1
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 247 ~~~~~Q~~~i----~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|+|.|.+.+ ..+..+.++++.+|||+|||+++++|++.++...... ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999944 5566889999999999999999999999887653211 02347999999999998887777765
No 171
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.99 E-value=1.2e-09 Score=120.73 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=93.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC-ceE-EEecccccccCCcCCccEEEEcCCC
Q 007090 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YHV-LIATDVAARGLDIKSIKSVVNFDIA 548 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~-~~V-LVaT~~~~~Gldi~~v~~VI~~~~p 548 (618)
.+++||++....+..+...|...++.+..+.|.|+...|.+.+..|..+. ..| |++..+.+.|+|+..+.+|+..|+.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 49999999999999999999999999999999999999999999999654 334 5577888899999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCeEEE-EEecC
Q 007090 549 RDMDMHVHRIGRTGRAGDKDGTAY-TLVTQ 577 (618)
Q Consensus 549 ~~~~~y~Qr~GR~gR~g~~~g~~~-~l~~~ 577 (618)
|||....|.+.|++|.|+...+-+ .|+..
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~i~ 649 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFIIK 649 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeehhh
Confidence 999999999999999995544444 44443
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.97 E-value=2.7e-08 Score=98.08 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|++.|..++-.+..|+ |+...||-|||++..+|+..+.+. |..|-|++....||..=++++..+...+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 468889988887776665 999999999999988888777653 6678899999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHH-HHHcc------ccccCceeEEEecchhhhh
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID-MLKMK------ALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~-~l~~~------~~~l~~~~~iIvDEah~~~ 385 (618)
|+.+.++..+.+...... .. .++|+++|...+.- .++.. ....+.+.++||||+|.|+
T Consensus 146 Glsv~~~~~~~~~~~r~~-~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERRE-AY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHH-HH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHH-HH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999887544322 22 37899999998864 33221 1125678999999999765
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.63 E-value=6.7e-07 Score=101.39 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=58.7
Q ss_pred HHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 345 l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
+.....|+++||..|..-+-.+.+.+..++.|||||||++....-...|..++..-++..-+.+|||.+.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4455789999999998877788899999999999999998876666677777777777778999999874
No 174
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.48 E-value=3e-05 Score=80.47 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCC------cEEEEeCCCCHHHHHHHHHHHh----cCCceEEEec--ccccccCCcC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGF------KAAALHGDKDQASRMEILQKFK----SGVYHVLIAT--DVAARGLDIK 537 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~------~~~~l~g~~~~~~r~~~~~~F~----~g~~~VLVaT--~~~~~Gldi~ 537 (618)
+++++.|.+++...+.++......|+ .-...-+.-+..+-.-++...+ +|+--||++. .-.++|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 57899999999999988888776653 1133334444444455555543 4666677665 5666999998
Q ss_pred Ccc--EEEEcCCCCC
Q 007090 538 SIK--SVVNFDIARD 550 (618)
Q Consensus 538 ~v~--~VI~~~~p~~ 550 (618)
+-. .||+++.|.-
T Consensus 610 hhyGR~ViM~gIP~q 624 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQ 624 (755)
T ss_pred cccCceEEEEeccch
Confidence 744 8999999974
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.45 E-value=2.7e-06 Score=96.62 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=58.3
Q ss_pred CceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC-CCCeE-------EE-EEecCccHHHHHHHHHHH
Q 007090 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGT-------AY-TLVTQKEARFAGELVNSL 590 (618)
Q Consensus 520 ~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g-~~~g~-------~~-~l~~~~d~~~~~~i~~~l 590 (618)
..++|++-+++.+|.|.|+|-.+.......+...-.|.+||..|.- +..|. .. .+++.....++..|++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999989998888889999999999853 11222 22 334556788899988888
Q ss_pred HHc
Q 007090 591 IAA 593 (618)
Q Consensus 591 ~~~ 593 (618)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 664
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.41 E-value=4.9e-06 Score=81.63 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEeCCCCcHHHHHHHHHHHHHhcCC-ccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~d-vl~~~~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
++++-|..|+..+++... .++.||+|+|||.+ +..++.+++... ......+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999998 99999999999964 344444442100 11123478899999999999999888887
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.37 E-value=1e-05 Score=88.63 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC-CCCeEEEE-----------EecCccHHHHHHH
Q 007090 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAYT-----------LVTQKEARFAGEL 586 (618)
Q Consensus 519 g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g-~~~g~~~~-----------l~~~~d~~~~~~i 586 (618)
...++|.+-.++-+|.|-|+|=++.-.....|..+=.|-+||..|.- +..|.-++ ++...+..+...|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 35789999999999999999999999999999999999999999965 44455444 4556678888888
Q ss_pred HHHHHHc
Q 007090 587 VNSLIAA 593 (618)
Q Consensus 587 ~~~l~~~ 593 (618)
++-+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766553
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.31 E-value=1.3e-06 Score=81.11 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=59.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc--cccccCCcCC--ccEEE
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVV 543 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~--~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~--~~~~Gldi~~--v~~VI 543 (618)
+|++|||++|+..++.+.+.++.... ....+.. +...+..+++.|+.+...||+++. .+.+|+|+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 68999999999999999999986531 1223333 345788999999999999999998 8899999997 88999
Q ss_pred EcCCCC
Q 007090 544 NFDIAR 549 (618)
Q Consensus 544 ~~~~p~ 549 (618)
..++|.
T Consensus 87 i~glPf 92 (167)
T PF13307_consen 87 IVGLPF 92 (167)
T ss_dssp EES---
T ss_pred ecCCCC
Confidence 999885
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.29 E-value=3e-06 Score=80.82 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=70.9
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 247 KPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~--dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
+|++-|..++..++... -+++.|+.|+|||.+ +..+...+.. .+.++++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 37889999999997543 577889999999964 2333333322 2678999999998887654441
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc----ccCceeEEEecchhhhhcCCChHHHHHHHHhc
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL----TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~----~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~ 400 (618)
++.+ .|..+++........ .+...++||||||-.+. ...+..++..+
T Consensus 67 -~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp -TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred -Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 2221 222222211111111 15566799999999754 45667777777
Q ss_pred CC-CccEEEEecc
Q 007090 401 RP-DRQTLLFSAT 412 (618)
Q Consensus 401 ~~-~~q~i~~SAT 412 (618)
+. ..++|++-=+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 66 4556655433
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.28 E-value=6.5e-06 Score=81.53 Aligned_cols=170 Identities=13% Similarity=0.100 Sum_probs=106.2
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIIL----------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 230 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~----------~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
+.|++.+... ..++..|.+++-... .....++...||.||.-+..-.++.+++.- ..
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~ 92 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RK 92 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CC
Confidence 4677766543 457888998885543 235778888999999876444455555432 34
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc---ccc-------
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALT------- 369 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~------- 369 (618)
+.|++..+..|.....+.++.+... .+.+..+...... . ...-...|+++||..|...-... ...
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~--~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG--D--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC--c--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 6899999999999888888776432 2222222111000 0 01123579999999998775321 111
Q ss_pred c--CceeEEEecchhhhhcCCC--------hHHHHHHHHhcCCCccEEEEeccccHHHH
Q 007090 370 M--SRVTYLVLDEADRMFDLGF--------EPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (618)
Q Consensus 370 l--~~~~~iIvDEah~~~~~~~--------~~~i~~i~~~~~~~~q~i~~SAT~~~~~~ 418 (618)
+ ..-.+|||||||.+.+..- ...+..+.+.+ |.-+++.+|||...+..
T Consensus 168 ~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPR 225 (303)
T ss_pred HhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCc
Confidence 1 1235899999999876542 13444555666 44559999999765433
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.22 E-value=9.5e-06 Score=86.34 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=67.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHH
Q 007090 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (618)
Q Consensus 239 ~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~ 318 (618)
.+...++.+|+.-|..|+..+++..-.|++||+|+|||.+ ...++.|+..+ .+..||+++|+...+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 4556688899999999999999999999999999999985 34555666554 2555899999999999998887
Q ss_pred HHHHhhcCceEEEEEC
Q 007090 319 KKFAKSHGIRVSAVYG 334 (618)
Q Consensus 319 ~~~~~~~~~~~~~~~g 334 (618)
.+. |++++-+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 776 666655443
No 182
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.19 E-value=4.1e-07 Score=101.18 Aligned_cols=259 Identities=20% Similarity=0.190 Sum_probs=151.5
Q ss_pred CcHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 248 PTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 248 ~~~~Q~~~i~~i~-~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
..|+|.+.+..+. ...++++.+|||+|||++|-+.++..+...| +.++++++|-..|...-.+.+.+.....|
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCC
Confidence 3445555443333 2357889999999999999988887776554 67899999999999887777777655558
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH--ccccccCceeEEEecchhhhhcCCChHHHHHHHH------
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK--MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG------ 398 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~--~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~------ 398 (618)
++++-..|..... ...+ ..++|+|+||.+.....+ .....+.+++.+|+||.|.+.. +..+.+..+..
T Consensus 1002 ~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCc
Confidence 8888888776554 1222 348999999999988776 3455678899999999997653 32333222211
Q ss_pred -hcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcc-ccccceeEEE------EEcCCCcccHHHHHHhcCCCCCC
Q 007090 399 -QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVV------HVIPSDAEKLPWLLEKLPGMIDD 470 (618)
Q Consensus 399 -~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~q~~------~~~~~~~~k~~~l~~~l~~~~~~ 470 (618)
...+..+.+++|.-+ .+...++.+.-..+. .+... .......-.+ .+++....+..--...++...+.
T Consensus 1078 ~~t~~~vr~~glsta~-~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTAL-ANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred cccCcchhhhhHhhhh-hccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 222344555554333 233455555433222 11100 0011111111 11222223334445666666667
Q ss_pred CcEEEEcCChhHHHHHHHHHH----hCCCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 007090 471 GDVLVFASKKTTVDEIESQLA----QKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~----~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~ 522 (618)
.++|||+.+......-+.-|. ...-+-..++ ++..+-+.++........+
T Consensus 1154 ~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccchh
Confidence 899999998776544443332 2222233333 3345555566555554443
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.14 E-value=6.3e-05 Score=71.98 Aligned_cols=151 Identities=16% Similarity=0.248 Sum_probs=96.4
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS---GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~---~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
+|.....|..++=.+... .-+++.|.+.+..+.+ +.+.+.+.-||.|||.+ ++|++..++... ..-+.
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 455555566655444322 4589999999988885 57999999999999986 789988887642 34455
Q ss_pred EEcccHHHHHHHHHHHHHHHhh-cCceEEEEEC--CCCh-H---HHHH----HHHcCCcEEEeChHHHHHHHHcc-----
Q 007090 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYG--GMSK-L---DQFK----ELKAGCEIVIATPGRLIDMLKMK----- 366 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~g--g~~~-~---~~~~----~l~~~~dIiv~Tp~~L~~~l~~~----- 366 (618)
+++| +.|..|....+..-.+. .+-++..+.- .... . ..+. .......|+++||+.+..+.-..
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 7788 57888998888765543 2333332222 2211 1 1121 23345679999999987654211
Q ss_pred --c-----------cccCceeEEEecchhhhhc
Q 007090 367 --A-----------LTMSRVTYLVLDEADRMFD 386 (618)
Q Consensus 367 --~-----------~~l~~~~~iIvDEah~~~~ 386 (618)
. ..+.....-|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 0133455679999998664
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.13 E-value=1.1e-05 Score=76.39 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=74.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH-------HHHH
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-------YLET 318 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~-------~~~~ 318 (618)
...++-|..++..++...-+++.|+.|+|||+.++..++..+.. +.-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~------g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE------GEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT------TS-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh------CCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44678999999999999999999999999999888888877754 2356788888876432111 0000
Q ss_pred HHHHhh----cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHH
Q 007090 319 KKFAKS----HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (618)
Q Consensus 319 ~~~~~~----~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~ 394 (618)
.-+..+ +.... + ......+.....|-+.++..+ +.. .+. -.+||||||+.+. ..++.
T Consensus 77 ~p~~~p~~d~l~~~~-----~---~~~~~~~~~~~~Ie~~~~~~i-----RGr-t~~-~~~iIvDEaQN~t----~~~~k 137 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-----G---KEKLEELIQNGKIEIEPLAFI-----RGR-TFD-NAFIIVDEAQNLT----PEELK 137 (205)
T ss_dssp -TTTHHHHHHHTTTS---------TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHH
T ss_pred HHHHHHHHHHHHHHh-----C---hHhHHHHhhcCeEEEEehhhh-----cCc-ccc-ceEEEEecccCCC----HHHHH
Confidence 000000 00000 1 111222333345555554222 111 122 3799999999854 66888
Q ss_pred HHHHhcCCCccEEEEec
Q 007090 395 SIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 395 ~i~~~~~~~~q~i~~SA 411 (618)
.++.++..+.+++++--
T Consensus 138 ~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGD 154 (205)
T ss_dssp HHHTTB-TT-EEEEEE-
T ss_pred HHHcccCCCcEEEEecC
Confidence 99999888887776643
No 185
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.99 E-value=2.3e-07 Score=101.52 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=63.7
Q ss_pred ccHHHHHHhcCCCCCC-CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc---CCceEEEecccc
Q 007090 455 EKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVYHVLIATDVA 530 (618)
Q Consensus 455 ~k~~~l~~~l~~~~~~-~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~---g~~~VLVaT~~~ 530 (618)
.|+..|...++.+... .+||||.......+.+..++...+ ....+.|..+..+|..++..|+. ....+|++|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 3444555555544443 499999999999999999999888 89999999999999999999983 457789999987
Q ss_pred ccc
Q 007090 531 ARG 533 (618)
Q Consensus 531 ~~G 533 (618)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 765
No 186
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.95 E-value=8.1e-05 Score=83.52 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
..+++.|..++..++.. ..+++.||+|+|||.+ +..++.++... +++||+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46899999999998876 6788999999999975 34444554432 66899999999999999887765
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.92 E-value=2.7e-05 Score=82.68 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHHhcCC-cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~-dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
..+.+-|.+|+....+.+ -.++.||+|+|||.+ +.-++..+..+ +.+|||++||...+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 357789999999998885 557899999999986 34445555443 6889999999999999988643
No 188
>PRK10536 hypothetical protein; Provisional
Probab=97.87 E-value=0.00031 Score=68.64 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=80.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH-----------H
Q 007090 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA-----------H 312 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La-----------~ 312 (618)
++...+..|...+.++.++.-+++.|++|+|||+..+..++..+... .-.+++|.=|+.... .
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 44567789999999999988899999999999987666665555432 134566666664321 1
Q ss_pred HHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH--cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCCh
Q 007090 313 QIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK--AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390 (618)
Q Consensus 313 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~ 390 (618)
.+.-.+.-+...+... .+. .....+. ....|-|+... +++-. .+ .-++||||||+++. .
T Consensus 130 K~~p~~~pi~D~L~~~----~~~----~~~~~~~~~~~~~Iei~~l~----ymRGr--tl-~~~~vIvDEaqn~~----~ 190 (262)
T PRK10536 130 KFAPYFRPVYDVLVRR----LGA----SFMQYCLRPEIGKVEIAPFA----YMRGR--TF-ENAVVILDEAQNVT----A 190 (262)
T ss_pred HHHHHHHHHHHHHHHH----hCh----HHHHHHHHhccCcEEEecHH----HhcCC--cc-cCCEEEEechhcCC----H
Confidence 1111122221111110 111 1112121 12234455432 22211 22 33799999999754 4
Q ss_pred HHHHHHHHhcCCCccEEEE
Q 007090 391 PQIRSIVGQIRPDRQTLLF 409 (618)
Q Consensus 391 ~~i~~i~~~~~~~~q~i~~ 409 (618)
.++..++..+..+.++|+.
T Consensus 191 ~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHhhcCCCCEEEEe
Confidence 6788888888777766654
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.87 E-value=6.3e-05 Score=83.04 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=65.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHhc--------CCceEEEecccccccCC
Q 007090 471 GDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKS--------GVYHVLIATDVAARGLD 535 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~~~-------~~~~~~l~g~~~~~~r~~~~~~F~~--------g~~~VLVaT~~~~~Gld 535 (618)
.++|||.|++...+.+..++... +..- ++.+=.+..+-.+++..|-+ |..-+.||-.-+++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 45999999999888886666542 1222 22222233344455555543 33445666678889999
Q ss_pred cCC--ccEEEEcCCCCC-----------------------------------HH---HHHHHHhhcccCCCCCeEEEEE
Q 007090 536 IKS--IKSVVNFDIARD-----------------------------------MD---MHVHRIGRTGRAGDKDGTAYTL 574 (618)
Q Consensus 536 i~~--v~~VI~~~~p~~-----------------------------------~~---~y~Qr~GR~gR~g~~~g~~~~l 574 (618)
+.+ .+.||..+.|.- .+ ..-|.+||+-|.-+.-|..+.+
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 985 778998887751 11 1139999999987656666633
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.87 E-value=0.00017 Score=79.87 Aligned_cols=140 Identities=21% Similarity=0.235 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceE
Q 007090 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (618)
Q Consensus 250 ~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~ 329 (618)
+.|+.++..++.++-+++.|++|+|||.+ +..++..+..... ....+++++++||--.|..+.+.+..........
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 79999999999999999999999999974 2333333332211 0113579999999999988877766543221110
Q ss_pred EEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH------ccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCC
Q 007090 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK------MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (618)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~------~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~ 403 (618)
. .+.....+-..|..+|+.... ....+.-.+++||||||-++- ...+..++..+++.
T Consensus 224 --------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 --------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPN 286 (586)
T ss_pred --------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCC
Confidence 0 011111122344444433211 111123367899999999633 44566788888888
Q ss_pred ccEEEEe
Q 007090 404 RQTLLFS 410 (618)
Q Consensus 404 ~q~i~~S 410 (618)
.++|++-
T Consensus 287 ~rlIlvG 293 (586)
T TIGR01447 287 TKLILLG 293 (586)
T ss_pred CEEEEEC
Confidence 8888774
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.81 E-value=0.0002 Score=79.52 Aligned_cols=141 Identities=19% Similarity=0.208 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCce
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~ 328 (618)
.++|+.|+-..+.++-+++.|++|+|||.+ +..++..+.... ......+++++||...|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 589999999999999999999999999975 233333332211 1123568899999999998887776544322210
Q ss_pred EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHH------HccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC
Q 007090 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML------KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (618)
Q Consensus 329 ~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l------~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~ 402 (618)
. . +......-..|-.+|+... .....+.-.+++||||||-++- ...+..++..+++
T Consensus 230 ---------~--~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~ 291 (615)
T PRK10875 230 ---------D--E---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPP 291 (615)
T ss_pred ---------h--h---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhccc
Confidence 0 0 0000111123333333221 0111123356899999999632 4456678888888
Q ss_pred CccEEEEec
Q 007090 403 DRQTLLFSA 411 (618)
Q Consensus 403 ~~q~i~~SA 411 (618)
..++|++-=
T Consensus 292 ~~rlIlvGD 300 (615)
T PRK10875 292 HARVIFLGD 300 (615)
T ss_pred CCEEEEecc
Confidence 888887743
No 192
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.80 E-value=7.9e-05 Score=78.07 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=67.3
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 343 (618)
-+++.|.+|+|||++. +.++..+. ....+..++++++...|...+...+.+... .
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------~--------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------P--------- 57 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhcc----------c---------
Confidence 4788999999999863 33333331 122467789999999998877666655430 0
Q ss_pred HHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-------ChHHHHHHHHh
Q 007090 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-------FEPQIRSIVGQ 399 (618)
Q Consensus 344 ~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-------~~~~i~~i~~~ 399 (618)
......+..+..+...+.........+++|||||||++.... ...++..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223444444444333223456789999999999998731 24566666665
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.72 E-value=0.00034 Score=79.84 Aligned_cols=130 Identities=19% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..+++-|++++..+..++-+++.|++|+|||.+ +-.+..++... +....+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~--l~~i~~~~~~~----~~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI--TRAIIELAEEL----GGLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHHHHc----CCCceEEEEeCchHHHHHHHHhc-------
Confidence 579999999999999999999999999999964 33333333321 11156888999998887554321
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q 405 (618)
|... ...... +....+ .... .........++||||||+++- ...+..++..+++..+
T Consensus 389 g~~a------~Tih~l---L~~~~~-------~~~~---~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 389 GLTA------STIHRL---LGYGPD-------TFRH---NHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred CCcc------ccHHHH---hhccCC-------ccch---hhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 2111 000000 000000 0000 000112357899999999753 3345677777887777
Q ss_pred EEEEec
Q 007090 406 TLLFSA 411 (618)
Q Consensus 406 ~i~~SA 411 (618)
+|++-=
T Consensus 446 lilvGD 451 (720)
T TIGR01448 446 LLLVGD 451 (720)
T ss_pred EEEECc
Confidence 777643
No 194
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.65 E-value=0.00022 Score=70.52 Aligned_cols=84 Identities=23% Similarity=0.431 Sum_probs=69.7
Q ss_pred HHHHHHhcCCceEEEecccccccCCcCC--------ccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCc---c
Q 007090 511 EILQKFKSGVYHVLIATDVAARGLDIKS--------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK---E 579 (618)
Q Consensus 511 ~~~~~F~~g~~~VLVaT~~~~~Gldi~~--------v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~---d 579 (618)
...+.|++|+..|+|.++++++|+.+.. -+.-|...+||+....+|..||++|.|+..+-.|.++... +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5677899999999999999999998863 3345678899999999999999999997667777776654 7
Q ss_pred HHHHHHHHHHHHHcC
Q 007090 580 ARFAGELVNSLIAAG 594 (618)
Q Consensus 580 ~~~~~~i~~~l~~~~ 594 (618)
..++..+.+.|...+
T Consensus 132 ~Rfas~va~rL~sLg 146 (278)
T PF13871_consen 132 RRFASTVARRLESLG 146 (278)
T ss_pred HHHHHHHHHHHhhcc
Confidence 788888888887654
No 195
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.00031 Score=74.44 Aligned_cols=158 Identities=20% Similarity=0.190 Sum_probs=79.6
Q ss_pred EEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH-HHhhcCceEEEEECCCChH----HH
Q 007090 267 GIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKSHGIRVSAVYGGMSKL----DQ 341 (618)
Q Consensus 267 ~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~-~~~~~~~~~~~~~gg~~~~----~~ 341 (618)
..+.||||||++. ..++.+++.++ ....|+.|...........-+.. ....+-+.-...+++.... ..
T Consensus 2 f~matgsgkt~~m-a~lil~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVM-AGLILECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHH-HHHHHHHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 4578999999864 44455666542 34567776655444333222111 1110001111112221111 11
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHcc---ccc---cCcee-EEEecchhhhhc-------------CCChHHHHHHHHhcC
Q 007090 342 FKELKAGCEIVIATPGRLIDMLKMK---ALT---MSRVT-YLVLDEADRMFD-------------LGFEPQIRSIVGQIR 401 (618)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~---l~~~~-~iIvDEah~~~~-------------~~~~~~i~~i~~~~~ 401 (618)
+.....+..|+++|.++|...+.+. .+. +.... +++-||||++-. ..|...+...++ -+
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~n 153 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QN 153 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cC
Confidence 1112345789999999998777542 122 23333 457799998732 112333332222 24
Q ss_pred CCccEEEEeccccHHHHHHHHHHcCCCeEEEEc
Q 007090 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (618)
++.-++.+|||.|.+ .-+..-+.+.+.+..+
T Consensus 154 kd~~~lef~at~~k~--k~v~~ky~dkiv~~y~ 184 (812)
T COG3421 154 KDNLLLEFSATIPKE--KSVEDKYEDKIVVTYT 184 (812)
T ss_pred CCceeehhhhcCCcc--ccHHHHhccceEEeee
Confidence 566688899999843 2333334445444443
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.50 E-value=0.0006 Score=76.24 Aligned_cols=139 Identities=20% Similarity=0.205 Sum_probs=86.9
Q ss_pred cccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 228 EDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 228 ~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~-dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
....+.+.+...+ ...|+.-|++|+-.++..+ ..++.|=+|+|||.+.+. ++.-+.. .|.+||+.+-
T Consensus 654 ~~~~~~p~~~~~~----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gkkVLLtsy 721 (1100)
T KOG1805|consen 654 LSKVLIPKIKKII----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGKKVLLTSY 721 (1100)
T ss_pred cccccCchhhHHH----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCCeEEEEeh
Confidence 3344555555432 2468889999998877665 568889999999975322 2222222 2788999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCCh-----------------HHHHHHHHcCCcEEEeChHHHHHHHHccccc
Q 007090 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSK-----------------LDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (618)
Q Consensus 307 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~-----------------~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~ 369 (618)
|...+..+.-.+..+ ++...-+..+... ....+.......||.||--++.+.+- .
T Consensus 722 ThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~ 793 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----V 793 (1100)
T ss_pred hhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----h
Confidence 988887774444433 3332211112221 22233444567888888776665443 4
Q ss_pred cCceeEEEecchhhhhc
Q 007090 370 MSRVTYLVLDEADRMFD 386 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~ 386 (618)
.+.|+|+|||||-.+..
T Consensus 794 ~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILL 810 (1100)
T ss_pred ccccCEEEEcccccccc
Confidence 55799999999997653
No 197
>PF13245 AAA_19: Part of AAA domain
Probab=97.47 E-value=0.00058 Score=54.01 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~ 318 (618)
+.-+++.+++|+|||.+. +..+.++.... ... +..+|+++||+.++.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTL-AARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 445566999999999653 44445544211 012 667999999999999887777
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.41 E-value=0.00063 Score=60.06 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=12.0
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.++.+++.|++|+|||.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 346789999999999975
No 199
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.41 E-value=0.0015 Score=74.89 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
..+++-|+.++..++.+ +-+++.|++|+|||.+ +-.+..++.. .+..+++++||--.|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 46899999999998874 6779999999999954 4455554433 267799999998777655321
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCC
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~ 403 (618)
.++... |-.++...+......+...++||||||-++-.. .+..++... ...
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAG 467 (744)
T ss_pred cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcC
Confidence 122211 112221111222334567899999999965422 334444432 245
Q ss_pred ccEEEEe
Q 007090 404 RQTLLFS 410 (618)
Q Consensus 404 ~q~i~~S 410 (618)
.++|++-
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 5555554
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.39 E-value=0.0015 Score=58.57 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCC------cEEEEeCCCCHHHHHHHHHHHhcCC-ceEEEecccccccCCcCC--ccEEEEcCCCC
Q 007090 482 TVDEIESQLAQKGF------KAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIKS--IKSVVNFDIAR 549 (618)
Q Consensus 482 ~~~~l~~~L~~~~~------~~~~l~g~~~~~~r~~~~~~F~~g~-~~VLVaT~~~~~Gldi~~--v~~VI~~~~p~ 549 (618)
..+.+...+...+. ....+..+.+..+...+++.|+... ..||++|..+.+|+|+++ ++.||..++|.
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34556666655543 2344555566667889999998754 379999988999999998 67899888774
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.36 E-value=0.0017 Score=75.59 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCCcHHHHHHHHHHhcCC-cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 246 EKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~-dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
..|++-|++++..+++++ -+++.|..|+|||++ +-.+..++.. .|..|+.++||--.|..+.+.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e~------- 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA------AGYEVRGAALSGIAAENLEGG------- 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCcHHHHHHHhhc-------
Confidence 469999999999999865 478999999999964 4444444332 377899999998777554321
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCC
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~ 403 (618)
.|+.. .|..+|..-.......+...++||||||-++- ...+..++... ...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAG 461 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCC
Confidence 12211 12222221111223346677899999999644 23444555544 345
Q ss_pred ccEEEEec
Q 007090 404 RQTLLFSA 411 (618)
Q Consensus 404 ~q~i~~SA 411 (618)
.++|++-=
T Consensus 462 arvVLVGD 469 (988)
T PRK13889 462 AKVVLVGD 469 (988)
T ss_pred CEEEEECC
Confidence 56666543
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.32 E-value=0.00077 Score=70.85 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH
Q 007090 247 KPTSIQCQALPII------LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (618)
Q Consensus 247 ~~~~~Q~~~i~~i------~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~ 314 (618)
+|++-|+.++..+ ..+..+++.|+-|+||| |++-++.+.+.. .+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3677899998888 67889999999999999 456666655443 367799999998888655
No 203
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.28 E-value=0.00071 Score=77.61 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=92.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCC----------ccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEE
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP----------ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~----------~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~ 330 (618)
.|+++++...+|+|||..-+...+.+.-+.- ........-+|||||. ++..||..++.+.+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 4567899999999999875544444321100 0011123557999996 66779999999998753 5665
Q ss_pred EEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc--------------ccC------ceeEEEecchhhhhcCCCh
Q 007090 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--------------TMS------RVTYLVLDEADRMFDLGFE 390 (618)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--------------~l~------~~~~iIvDEah~~~~~~~~ 390 (618)
...|-.+..-......-.+|||+|||..|...+..... ..+ .+=.|+||||+.+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 55442211100001223599999999999887743211 111 123499999996543 34
Q ss_pred HHHHHHHHhcCCCccEEEEeccccHHHHH
Q 007090 391 PQIRSIVGQIRPDRQTLLFSATMPRKVEK 419 (618)
Q Consensus 391 ~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 419 (618)
.....++..++ ....-..|+||-..+..
T Consensus 529 S~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 529 SAAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 45555555553 34467789997544433
No 204
>PRK08181 transposase; Validated
Probab=97.25 E-value=0.0057 Score=61.06 Aligned_cols=113 Identities=12% Similarity=0.191 Sum_probs=62.3
Q ss_pred HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCC
Q 007090 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (618)
Q Consensus 257 ~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~ 336 (618)
.++-.+++++++||+|+|||.... .+..++... |..|+++ +..+|..++... ..
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~-------g~~v~f~-~~~~L~~~l~~a----~~------------- 154 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN-------GWRVLFT-RTTDLVQKLQVA----RR------------- 154 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc-------CCceeee-eHHHHHHHHHHH----Hh-------------
Confidence 356688899999999999996422 222333221 4445544 444555443211 00
Q ss_pred ChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCC-hHHHHHHHHhcCCCccEEEEeccccH
Q 007090 337 SKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 337 ~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~-~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
+ .+...+.. .+.++++|||||.+.+....+ ...+..+++.......+|+.|-..+.
T Consensus 155 -------------~---~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 155 -------------E---LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred -------------C---CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 0 11112222 234678999999997543332 23456676655444566666666655
Q ss_pred HHH
Q 007090 416 KVE 418 (618)
Q Consensus 416 ~~~ 418 (618)
...
T Consensus 212 ~w~ 214 (269)
T PRK08181 212 EWN 214 (269)
T ss_pred HHH
Confidence 433
No 205
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.23 E-value=0.0011 Score=68.11 Aligned_cols=123 Identities=15% Similarity=0.065 Sum_probs=75.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCc
Q 007090 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~ 327 (618)
+++-|.+++.. ....+++.|..|||||.+.+.-++..+... . ....++|++++|+.+|..+.+.+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-G---VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-S---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc-c---CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57789999887 677899999999999987544444333332 1 23455999999999999999999997664321
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccC--ceeEEEecchh
Q 007090 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEAD 382 (618)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~--~~~~iIvDEah 382 (618)
.. ............-..+.|+|...+...+-+...... .-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 10 000011112223467889999888654433222211 22456777776
No 206
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.20 E-value=0.0021 Score=57.72 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCC---cEEEEeCCCCHHHHHHHHHHHhcCCc---eEEEeccc--ccccCCcCC--ccEEEEcCCCC
Q 007090 482 TVDEIESQLAQKGF---KAAALHGDKDQASRMEILQKFKSGVY---HVLIATDV--AARGLDIKS--IKSVVNFDIAR 549 (618)
Q Consensus 482 ~~~~l~~~L~~~~~---~~~~l~g~~~~~~r~~~~~~F~~g~~---~VLVaT~~--~~~Gldi~~--v~~VI~~~~p~ 549 (618)
..+.+++.+...+. ....+.......+...+++.|+.... .||+++.. +++|+|+++ ++.||..+.|.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 45667777766543 22333333444455788899987544 68888876 899999998 68999988774
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.13 E-value=0.0045 Score=63.75 Aligned_cols=132 Identities=22% Similarity=0.282 Sum_probs=74.9
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc-cc-H-HHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-PT-R-ELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~-Pt-r-~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
.-++++|++|+|||++ +..+.+.+.. .+.+++++. .| | ....|+ ..++...++.+.....+....
T Consensus 141 ~vi~~~G~~GvGKTTt--iakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTT--IAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCCHH
Confidence 4678899999999975 3333333322 244555554 32 2 333444 444444465543222221111
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~ 418 (618)
.. +.+.+... ....+++|+||.+.++.. ......+..+...+.+...++.++||......
T Consensus 209 ~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 209 AV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred HH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 10 11222111 123567999999998752 33556677777777888889999999876666
Q ss_pred HHHHHHc
Q 007090 419 KLAREIL 425 (618)
Q Consensus 419 ~l~~~~~ 425 (618)
..+..|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666654
No 208
>PRK04296 thymidine kinase; Provisional
Probab=97.12 E-value=0.0031 Score=59.81 Aligned_cols=110 Identities=12% Similarity=0.165 Sum_probs=61.6
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc---HHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT---RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt---r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
.-.++.|++|+|||+.. +-++.++.. .+.+++|+-|. +....+ +....++...
T Consensus 3 ~i~litG~~GsGKTT~~-l~~~~~~~~-------~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~--------- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTEL-LQRAYNYEE-------RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE--------- 58 (190)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHHHHH-------cCCeEEEEeccccccccCCc-------EecCCCCccc---------
Confidence 34688999999999753 333333322 26678888663 222111 1111121110
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.+.+..+..+...+.. .-..+++|||||+|.+- ..++..++..+.+...++++++-.
T Consensus 59 ----------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 59 ----------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred ----------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 0123445555555433 23468899999998632 345667777766666677776654
No 209
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.09 E-value=0.0084 Score=70.46 Aligned_cols=124 Identities=19% Similarity=0.131 Sum_probs=77.2
Q ss_pred CCCcHHHHHHHHHHhc-CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 246 EKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~-~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
..|++-|.+++..+.. ++-+++.|..|+|||++ +-.+..++.. .|..|+.++||--.|..+.+ .
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~------~G~~V~g~ApTgkAA~~L~e----~--- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA------AGYRVVGGALAGKAAEGLEK----E--- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEEcCcHHHHHHHHH----h---
Confidence 4799999999998864 56789999999999964 4444444432 36779999999877765432 1
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC-CC
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PD 403 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~-~~ 403 (618)
.|+... |..+++.........+..-++||||||.++. ..++..++..+. ..
T Consensus 445 ~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 445 AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAG 496 (1102)
T ss_pred hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcC
Confidence 233221 1122211111122346677899999999643 334555666554 45
Q ss_pred ccEEEEecc
Q 007090 404 RQTLLFSAT 412 (618)
Q Consensus 404 ~q~i~~SAT 412 (618)
.++|++-=+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 666666433
No 210
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0085 Score=62.94 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeE-EEEccc-HHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v-LIl~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
.+.++++|+||+|||++..-.+..+.... ...+.+| ||-+-| |..+..+ +..++...++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~-------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA-------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe--------
Confidence 45789999999999986432222221111 0123334 454544 3434322 55565544554321
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-ChHHHHHHHHhcCCC-ccEEEEeccccH-H
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD-RQTLLFSATMPR-K 416 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~~-~q~i~~SAT~~~-~ 416 (618)
+.++..+...+. .+..+++||||++.++.... ....+..++..+.+. ...+.+|||... .
T Consensus 239 -------------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 239 -------------IESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred -------------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 223444444443 24578999999999865221 123445566655543 457889999864 3
Q ss_pred HHHHHHHH
Q 007090 417 VEKLAREI 424 (618)
Q Consensus 417 ~~~l~~~~ 424 (618)
+...+..|
T Consensus 302 ~~~~~~~~ 309 (388)
T PRK12723 302 VKEIFHQF 309 (388)
T ss_pred HHHHHHHh
Confidence 45555555
No 211
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.97 E-value=0.0027 Score=64.03 Aligned_cols=142 Identities=16% Similarity=0.240 Sum_probs=84.4
Q ss_pred CCCCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH-------
Q 007090 244 GYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI------- 314 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~------- 314 (618)
|+...+..|.-|+..++.- .=|.+.++.|+|||+.++.+.+...+..+ ...++||.=|+..+-..+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-----~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-----RYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-----hhceEEEecCCcCcccccCcCCCch
Confidence 5666677899999998866 35678999999999998888888887653 345577777765443221
Q ss_pred HHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccC--------c--eeEEEecchhhh
Q 007090 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--------R--VTYLVLDEADRM 384 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~--------~--~~~iIvDEah~~ 384 (618)
.+.+.-|.+ ...+....+++..+ |+.+.|..++.+..+.+. + -.+||||||+.+
T Consensus 300 EeKm~PWmq-------------~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 300 EEKMGPWMQ-------------AIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred hhhccchHH-------------HHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 000000100 00111111221111 123344444333222111 1 258999999985
Q ss_pred hcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 385 FDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
. ..++..|+.++.+..+++++.
T Consensus 364 T----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcC
Confidence 4 568889999998888777654
No 212
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.97 E-value=0.059 Score=68.10 Aligned_cols=237 Identities=14% Similarity=0.187 Sum_probs=129.8
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
.+++-|++++..++.. +-.++.++.|+|||.+ +-.+..++.. .|..|++++||...+..+.+.....+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 5889999999998875 6789999999999964 5555555443 377899999999888776554322110
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCC
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~ 403 (618)
........+.. .....|..++. .....+...++||||||-++. ...+..++... +..
T Consensus 500 ------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 500 ------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 00011111111 11123333333 223345677899999999643 34566666655 456
Q ss_pred ccEEEEecc--ccH----HHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEE
Q 007090 404 RQTLLFSAT--MPR----KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVF 476 (618)
Q Consensus 404 ~q~i~~SAT--~~~----~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF 476 (618)
.++|++-=+ ++. .+..++... +-+. +...........+ ...-.....+...+...+..... ...++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t-~~l~~i~rq~~~v---~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG-GVTT-YAWVDTKQQKASV---EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC-CCcE-EEeecccccCcce---eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 778877544 221 222222221 1111 1111111111111 11111223444456555554443 3469999
Q ss_pred cCChhHHHHHHHHHHh----CC------CcEEEEeC-CCCHHHHHHHHHHHhcCC
Q 007090 477 ASKKTTVDEIESQLAQ----KG------FKAAALHG-DKDQASRMEILQKFKSGV 520 (618)
Q Consensus 477 ~~~~~~~~~l~~~L~~----~~------~~~~~l~g-~~~~~~r~~~~~~F~~g~ 520 (618)
.++..+...|....+. .| +.+..+.. .++..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 9998888777766653 22 23334433 5677776643 6677664
No 213
>PRK06526 transposase; Provisional
Probab=96.90 E-value=0.0091 Score=59.23 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=28.5
Q ss_pred cCceeEEEecchhhhhcCCC-hHHHHHHHHhcCCCccEEEEeccccHH
Q 007090 370 MSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIRPDRQTLLFSATMPRK 416 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~-~~~i~~i~~~~~~~~q~i~~SAT~~~~ 416 (618)
+..+++|||||+|....... ...+..+++.......+|+.|...+..
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 34678999999997542222 223455555433345677777776654
No 214
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.026 Score=58.60 Aligned_cols=137 Identities=19% Similarity=0.270 Sum_probs=79.8
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
.+++.+.+.||||.|||++..=.+..+.+. .+.....||.+-|--.+. ++.++.++..+++.+.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~--------- 264 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLE--------- 264 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceE---------
Confidence 348899999999999998633222233211 223344567666544432 4556777766666554
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh-cCCChHHHHHHHHhcCCCccEEEEeccccH-HH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPR-KV 417 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~ 417 (618)
++-+|.-|...+. .+..+++|.||=+=+-. +......+..++....+.--.+.+|||... .+
T Consensus 265 ------------vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 265 ------------VVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred ------------EecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 3445555555544 35566778888766422 112344555566655555567788888754 45
Q ss_pred HHHHHHHcCCC
Q 007090 418 EKLAREILSDP 428 (618)
Q Consensus 418 ~~l~~~~~~~~ 428 (618)
...+..|-.-|
T Consensus 329 kei~~~f~~~~ 339 (407)
T COG1419 329 KEIIKQFSLFP 339 (407)
T ss_pred HHHHHHhccCC
Confidence 55666664433
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.82 E-value=0.015 Score=51.76 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 216
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.008 Score=62.62 Aligned_cols=131 Identities=19% Similarity=0.177 Sum_probs=67.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEccc-HHHHHHHHHHHHHHHhhcCceEEEEECCCCh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 338 (618)
.+..++++||||+|||++....+..++... ...++. |.+.+ |.-+ .+.+..++...++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~------G~~~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF------GASKVALLTTDSYRIGG---HEQLRIFGKILGVPVHA------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEecccccccH---HHHHHHHHHHcCCceEe-------
Confidence 567899999999999986443333332221 112343 33333 2222 34455555555554432
Q ss_pred HHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-ChHHHHHHHHhcCCCccEEEEeccccHH-
Q 007090 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRK- 416 (618)
Q Consensus 339 ~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~- 416 (618)
+.++..+...+. .+.+.++|+||.+=+..... ....+..+.....+...++.+|||....
T Consensus 200 --------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 200 --------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred --------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 223333333332 24466889999997532111 1122222222223345588899998554
Q ss_pred HHHHHHHHc
Q 007090 417 VEKLAREIL 425 (618)
Q Consensus 417 ~~~l~~~~~ 425 (618)
+...+..|.
T Consensus 262 l~evi~~f~ 270 (374)
T PRK14722 262 LNEVVQAYR 270 (374)
T ss_pred HHHHHHHHH
Confidence 344555554
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.75 E-value=0.012 Score=56.03 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=71.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc-cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P-tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
-++++||||+|||++.. -+..++... +....||.+- .|.-| .++++.++...++.+........
T Consensus 3 vi~lvGptGvGKTTt~a-KLAa~~~~~------~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~----- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA-KLAARLKLK------GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESD----- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHH-HHHHHHHHT------T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSC-----
T ss_pred EEEEECCCCCchHhHHH-HHHHHHhhc------cccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchh-----
Confidence 36889999999998632 222222211 1233344444 34344 34466666666766543222211
Q ss_pred HHHHcCCcEEEeChHHHH-HHHHccccccCceeEEEecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHHHH
Q 007090 343 KELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~-~~l~~~~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l 420 (618)
|..+. ..+.. ....++++|+||=+-+... ......+..++..+.+..-.+.+|||........
T Consensus 68 -------------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 68 -------------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp -------------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH
T ss_pred -------------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH
Confidence 22211 22221 1234578899998875321 1234566677777778888899999987665444
Q ss_pred HHHH
Q 007090 421 AREI 424 (618)
Q Consensus 421 ~~~~ 424 (618)
+..+
T Consensus 133 ~~~~ 136 (196)
T PF00448_consen 133 ALAF 136 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 218
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.60 E-value=0.018 Score=62.60 Aligned_cols=104 Identities=19% Similarity=0.314 Sum_probs=72.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHHh----cCCceEEEec--ccccccCCc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGF-------KAAALHGDKDQASRMEILQKFK----SGVYHVLIAT--DVAARGLDI 536 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~-------~~~~l~g~~~~~~r~~~~~~F~----~g~~~VLVaT--~~~~~Gldi 536 (618)
+|+|++|+|+++....+.+.+.+.|+ +-+++-...+ -..++..|. .|.-.+|+|. ..+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 48999999999999999999987653 2222222222 345566664 3555677766 788899999
Q ss_pred CC--ccEEEEcCCCCC------------------------HHHH--------HHHHhhcccCCCCCeEEEEEecC
Q 007090 537 KS--IKSVVNFDIARD------------------------MDMH--------VHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 537 ~~--v~~VI~~~~p~~------------------------~~~y--------~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
.+ .+.||.+++|.. -..| .|.||||-|.- +.-.++.|++.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~-~DYA~i~LlD~ 779 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHR-KDYASIYLLDK 779 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhh-ccceeEEEehh
Confidence 87 889999998863 1112 39999999987 44555555543
No 219
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.59 E-value=0.005 Score=60.31 Aligned_cols=86 Identities=24% Similarity=0.371 Sum_probs=63.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECC-CChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCce
Q 007090 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 296 ~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
...|.+||||..--=|..+.+.++.|... +..++-++.- ....++..-+.. ..+|.||||+||..+++.+.+.++.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 45799999999866666776666666311 1233323322 255667666764 68999999999999999999999999
Q ss_pred eEEEecchh
Q 007090 374 TYLVLDEAD 382 (618)
Q Consensus 374 ~~iIvDEah 382 (618)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999876
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.062 Score=52.88 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=30.9
Q ss_pred cCceeEEEecchhhhhcCCChHH-HHHHHHh-cCCCccEEEEeccccHHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQ-IRSIVGQ-IRPDRQTLLFSATMPRKVE 418 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~-i~~i~~~-~~~~~q~i~~SAT~~~~~~ 418 (618)
+..+++|||||++......|... +..++.. ....+.|++.|-..+..+.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 45788999999997654444443 3345554 3345677777776655543
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=96.48 E-value=0.012 Score=57.85 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=30.2
Q ss_pred CceeEEEecchhhhhcC-CChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 371 SRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
..++++|||++|.+... .+...+..+++.+......++++++.+|
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35678999999976533 3455677888877655455666666544
No 222
>PRK08116 hypothetical protein; Validated
Probab=96.44 E-value=0.075 Score=53.27 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=28.9
Q ss_pred cCceeEEEecchhh--hhcCCChHHHHHHHHhc-CCCccEEEEeccccHHHH
Q 007090 370 MSRVTYLVLDEADR--MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (618)
Q Consensus 370 l~~~~~iIvDEah~--~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~ 418 (618)
+...++||||+++. ..+|. ...+..+++.. .....+|+.|...|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 34678999999964 22222 33455566543 345667777776665543
No 223
>PHA02533 17 large terminase protein; Provisional
Probab=96.39 E-value=0.02 Score=62.97 Aligned_cols=149 Identities=16% Similarity=0.073 Sum_probs=85.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|.|+|...+..+..++-.++..+=..|||.+..+.++.+.+.. .+..+++++|++..|..+.+.++......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 358899999998876666667777788899987655455444432 25689999999999999888887665432
Q ss_pred C--ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC-
Q 007090 326 G--IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP- 402 (618)
Q Consensus 326 ~--~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~- 402 (618)
. +........ .....+.+|+.|.+.|-. .....-....++|+||+|.+.+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEWN----KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeecC----ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 1 110000000 001112355666554421 1111122467899999997543 22333344333332
Q ss_pred -CccEEEEeccc
Q 007090 403 -DRQTLLFSATM 413 (618)
Q Consensus 403 -~~q~i~~SAT~ 413 (618)
..+++++|++.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23455555553
No 224
>PRK06921 hypothetical protein; Provisional
Probab=96.36 E-value=0.05 Score=54.42 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+..+++.|++|+|||..
T Consensus 116 ~~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 457899999999999954
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.072 Score=55.53 Aligned_cols=129 Identities=21% Similarity=0.296 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEccc-HH-HHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPT-RE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Pt-r~-La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
+.++++|+||+|||+.....+ ..+.. .+.++. |-+-+ |. .+.| +..++...++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~--------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVI--------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEE---------
Confidence 578899999999998633332 23322 244454 44433 32 2333 3344433333221
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CChHHHHHHHHhcCCCccEEEEecccc-HHH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKV 417 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~-~~~ 417 (618)
++.+|..+.+.+..-. ....+++|+||-+=+.... .....+..++....+..-++.+|||.. ..+
T Consensus 301 ------------v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ------------ecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2346666666553211 1125789999988764422 123344555555556666777998765 455
Q ss_pred HHHHHHHc
Q 007090 418 EKLAREIL 425 (618)
Q Consensus 418 ~~l~~~~~ 425 (618)
...+..|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 66666664
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.30 E-value=0.0092 Score=52.59 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=25.6
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
+..+++.||+|+|||.. +..+...+... +..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl--~~~l~~~~~~~------~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTL--ARALARELGPP------GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHH--HHHHHhccCCC------CCCEEEECCEEccc
Confidence 46789999999999975 33333332221 12467777665433
No 227
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.29 E-value=0.0088 Score=65.37 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhc---------CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 250 SIQCQALPIILS---------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 250 ~~Q~~~i~~i~~---------~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
|+|+-.+-.++. .+.+++.-+=|-|||......++.+++-. ...++.++++++++.-|..+++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 577777766662 14678888999999986555555555432 23478899999999999999999998
Q ss_pred HHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc--ccccCceeEEEecchhhhhcCCChHHHHHHHH
Q 007090 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (618)
Q Consensus 321 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~ 398 (618)
+........... . ....... ...|.....+.+...+.+. ...-.+.+++|+||+|.+.+......+..-..
T Consensus 77 ~i~~~~~l~~~~-~-----~~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK-K-----PKIIKSN-KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch-h-----hhhhhhh-ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 876422111000 0 0000000 1233333323333322221 11223578999999998765433444443333
Q ss_pred hcCCCccEEEEec
Q 007090 399 QIRPDRQTLLFSA 411 (618)
Q Consensus 399 ~~~~~~q~i~~SA 411 (618)
. +++.+++++|.
T Consensus 150 ~-r~~pl~~~IST 161 (477)
T PF03354_consen 150 A-RPNPLIIIIST 161 (477)
T ss_pred c-CCCceEEEEeC
Confidence 3 45666666653
No 228
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.28 E-value=0.021 Score=60.99 Aligned_cols=145 Identities=12% Similarity=0.239 Sum_probs=85.5
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH-HHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~-La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
-.++.|..|||||.+.++-++.+++.. ..+.++|++-|+.. |...+...+.......++....-...... .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 468899999999998887777777664 12577899989887 67777777777766666542222211110 00
Q ss_pred HHHHc-CCcEEEeCh-HHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCC--CccEEEEeccccHHHH
Q 007090 343 KELKA-GCEIVIATP-GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVE 418 (618)
Q Consensus 343 ~~l~~-~~dIiv~Tp-~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~--~~q~i~~SAT~~~~~~ 418 (618)
.+.. |..|++..- ....++. ....+.++.+|||..+.. ..+..++..++. ....+++|.+|+....
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred -EecCCCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 1122 455666543 2221111 223468999999998642 244455555542 2224788888865333
Q ss_pred HHHHHHc
Q 007090 419 KLAREIL 425 (618)
Q Consensus 419 ~l~~~~~ 425 (618)
-+...|.
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 3444443
No 229
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.26 E-value=0.14 Score=54.89 Aligned_cols=129 Identities=22% Similarity=0.232 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEccc-HHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
++.+++.+|||+|||++..-.+....... .+.+|. |-+.+ |..+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~--------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVE--------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceE---------
Confidence 56789999999999976433222222011 133344 44443 33232 344555443444332
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CChHHHHHHHH-hcCCCccEEEEeccccH-H
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVG-QIRPDRQTLLFSATMPR-K 416 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~-~~~~~~q~i~~SAT~~~-~ 416 (618)
.+.++..+...+. .+..+++||||-+-+.... .....+..++. ...+....+++|||... .
T Consensus 283 ------------~~~~~~~l~~~l~----~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 ------------VVYDPKELAKALE----QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred ------------ccCCHHhHHHHHH----HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 1234444545543 2346799999988653211 12234445555 22344568889998864 4
Q ss_pred HHHHHHHH
Q 007090 417 VEKLAREI 424 (618)
Q Consensus 417 ~~~l~~~~ 424 (618)
+...+..|
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 55555555
No 230
>PRK08727 hypothetical protein; Validated
Probab=96.22 E-value=0.018 Score=56.47 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=26.7
Q ss_pred CceeEEEecchhhhhcCC-ChHHHHHHHHhcCCCc-cEEEEeccccHHH
Q 007090 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPDR-QTLLFSATMPRKV 417 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~~~-q~i~~SAT~~~~~ 417 (618)
.++++|||||+|.+.... ....+..+++.+.... ++|+.|...|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456789999999876433 2334455665553333 4444444444443
No 231
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.20 E-value=0.02 Score=56.26 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=26.8
Q ss_pred ceeEEEecchhhhhcC-CChHHHHHHHHhcCCC-ccEEEEeccccH
Q 007090 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPD-RQTLLFSATMPR 415 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~-~q~i~~SAT~~~ 415 (618)
++++|||||+|.+... .+...+..+++.+... ...+++|++.++
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 3478999999987533 3455566666665432 324555655544
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.17 E-value=0.055 Score=49.26 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=27.0
Q ss_pred cCceeEEEecchhhhhcCC----------ChHHHHHHHHhcCCCccEEEEecccc
Q 007090 370 MSRVTYLVLDEADRMFDLG----------FEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~----------~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
.....++||||++.+.... ....+..++..++....++++++..+
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 3467899999999875432 12444555555554455555555443
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=96.17 E-value=0.018 Score=56.36 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=30.6
Q ss_pred CceeEEEecchhhhhcC-CChHHHHHHHHhcCCC-ccEEEEeccccHH
Q 007090 371 SRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPD-RQTLLFSATMPRK 416 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~-~q~i~~SAT~~~~ 416 (618)
.+.++|||||+|.+... .+...+..+++.+... .+++++|++.+|.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 46789999999987533 3444566777766543 4566777776543
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.099 Score=53.89 Aligned_cols=48 Identities=6% Similarity=0.183 Sum_probs=29.4
Q ss_pred cCceeEEEecchhhhhcCCC-hHHHHHHHHhcC-CCccEEEEeccccHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIR-PDRQTLLFSATMPRKV 417 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~-~~~i~~i~~~~~-~~~q~i~~SAT~~~~~ 417 (618)
+.++++||||+.+......| ...+..+++..- ....+|+.|...+..+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 45788999999986543333 344556665543 3456666666555554
No 235
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.11 E-value=0.043 Score=59.25 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (618)
+..+++.|++|+|||.. +.++.+.+.. ...+.+++++.+ ..+...+...+..-.
T Consensus 141 ~npl~i~G~~G~GKTHL--l~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 141 YNPLFIYGESGMGKTHL--LKAAKNYIES----NFSDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred cCceEEECCCCCcHHHH--HHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 35689999999999953 4444443221 112455665544 555555543332200
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-ChHHHHHHHHhcCCC-ccEEEEeccccHHH
Q 007090 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD-RQTLLFSATMPRKV 417 (618)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~~-~q~i~~SAT~~~~~ 417 (618)
+.+..+.. .+.++++|||||+|.+.... ....+..+++.+... .|+|+.|-..|..+
T Consensus 195 ---------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ---------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ---------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 23467899999999765322 334556666665433 45555555444443
No 236
>PRK12377 putative replication protein; Provisional
Probab=95.92 E-value=0.081 Score=52.18 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=28.6
Q ss_pred cCceeEEEecchhhhhcCCCh-HHHHHHHHhc-CCCccEEEEeccccHHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGFE-PQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~-~~i~~i~~~~-~~~~q~i~~SAT~~~~~~ 418 (618)
+..+++|||||++......+. ..+..++..- ...+.+++.|--.+..+.
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~ 211 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMS 211 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHH
Confidence 467899999999754333333 2333454443 345677777765554433
No 237
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.90 E-value=0.036 Score=53.95 Aligned_cols=43 Identities=12% Similarity=0.272 Sum_probs=25.7
Q ss_pred eeEEEecchhhhhcC-CChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 373 VTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 373 ~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
..+|||||+|.+... .+...+..++..+......+++|++.++
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 468999999987543 2345566666554333334566666443
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.90 E-value=0.032 Score=63.32 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=54.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
.-..|++-|+.++- .....+++.|..|||||.+. +.-+.+++... ...+..+|+++.|+.+|..+.+.+....+
T Consensus 193 e~~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl-~~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVL-VARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHH-HHHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 33579999999984 33467899999999999863 44444554331 11245799999999999999998887654
No 239
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.82 E-value=0.029 Score=55.63 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=34.8
Q ss_pred ccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 367 ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 367 ~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
....+.+.++|+||||.|.... +..++..+........+++.+..+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3456778999999999987543 5567777777666777788777753
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.059 Score=53.49 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=59.8
Q ss_pred HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCC
Q 007090 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (618)
Q Consensus 258 ~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (618)
++.++.++++.|++|+|||..+ .++.+.+. . .|..|++ +++.+++.++...+.. |
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~-~------~g~sv~f-~~~~el~~~Lk~~~~~--------------~-- 155 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLA-IAIGNELL-K------AGISVLF-ITAPDLLSKLKAAFDE--------------G-- 155 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHH-HHHHHHHH-H------cCCeEEE-EEHHHHHHHHHHHHhc--------------C--
Confidence 3447789999999999999643 23333443 2 2555544 5666777665433222 0
Q ss_pred hHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCCh-HHHHHHHHhcCCCccEEEEecccc
Q 007090 338 KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE-PQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~-~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
.....|.+. +..++++||||.=......+. ..+..++......+..++.|-...
T Consensus 156 ----------------~~~~~l~~~-------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 156 ----------------RLEEKLLRE-------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred ----------------chHHHHHHH-------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 011122222 457889999998864333222 334455555444444544444443
No 241
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.75 E-value=0.08 Score=64.57 Aligned_cols=66 Identities=29% Similarity=0.280 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~ 315 (618)
..|++-|++++..++.. +-+++.|..|+|||.+ +-.+..++.. .....+..++.++||-..+..+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~--l~~i~~~~~~--l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ--FRAVMSAVNM--LPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH--HHHHHHHHHH--HhhccCceEEEEechHHHHHHHH
Confidence 36999999999999855 7889999999999975 2222221111 01123577889999988877653
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.73 E-value=0.075 Score=57.70 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=26.8
Q ss_pred ceeEEEecchhhhhcCC-ChHHHHHHHHhcC-CCccEEEEeccccHHHH
Q 007090 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVE 418 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~ 418 (618)
++++|||||+|.+.... ....+..+++.+. ...++++.|.+.|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 57799999999875432 2234455555543 34555554444444433
No 243
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.73 E-value=0.022 Score=56.28 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=40.2
Q ss_pred CCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcC
Q 007090 219 DVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (618)
Q Consensus 219 ~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~ 290 (618)
.+|..+.+|+++++|+-+.+.+.. ...=+++.||||||||++ +..++.++...
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 468999999999999987774321 112478899999999975 67788887654
No 244
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.68 E-value=0.091 Score=64.96 Aligned_cols=65 Identities=28% Similarity=0.284 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~ 314 (618)
..|++.|++++..++.. +-+++.|..|+|||.+ +-.+..++.. +....+..++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~--l~~v~~~~~~--l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ--FRAVMSAVNT--LPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH--HHHHHHHHHH--hhcccCceEEEECCcHHHHHHH
Confidence 46899999999999975 6789999999999964 3333333221 0112356788999998888655
No 245
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.67 E-value=0.049 Score=53.19 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=26.8
Q ss_pred ceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc-EEEEeccccH
Q 007090 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ-TLLFSATMPR 415 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q-~i~~SAT~~~ 415 (618)
..++|||||+|.+... ....+..+++....... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999986432 23445556655544444 5777777654
No 246
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.61 E-value=0.0042 Score=57.48 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=53.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHH
Q 007090 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345 (618)
Q Consensus 266 l~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 345 (618)
++.|+=|-|||.+.-+.+ ..+.. ....+++|.+|+.+-+..+.+.+.+-+...+++....... .......
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQ------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHH-HHHHH------hcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccc
Confidence 578899999997633222 22221 1235699999999988887777666555444443100000 0000011
Q ss_pred HcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 346 ~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
..+..|-+..|..+...- ...+++|||||=.+- .+.+..++... ..++||.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred cccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 124667777776554331 135789999999754 45666665443 2678888873
No 247
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.28 Score=53.27 Aligned_cols=131 Identities=17% Similarity=0.202 Sum_probs=64.4
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEccc-HHHHHHHHHHHHHHHhhcCceEEEEECCCC
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (618)
..++.++++|++|+|||......+...... ..+.++. |-+.+ |..+. +.+..+....++.+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~------~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------ 412 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQ------HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------ 412 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHh------cCCCceEEEecccccccHH---HHHHHhhcccCceeEe------
Confidence 356788899999999997643322222211 1122344 33333 43332 2233333322332211
Q ss_pred hHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-ChHHHHHHHHhcCCCccEEEEecccc-H
Q 007090 338 KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMP-R 415 (618)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~-~ 415 (618)
+.++..+...+. .+..+++||||.+=+..... ....+..+ ........+++++++.. .
T Consensus 413 ---------------a~d~~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss~~ 472 (559)
T PRK12727 413 ---------------ADSAESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHFS 472 (559)
T ss_pred ---------------cCcHHHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCChh
Confidence 123344555554 23468899999997532111 11122222 22334456778888865 3
Q ss_pred HHHHHHHHHc
Q 007090 416 KVEKLAREIL 425 (618)
Q Consensus 416 ~~~~l~~~~~ 425 (618)
.+...++.|.
T Consensus 473 Dl~eii~~f~ 482 (559)
T PRK12727 473 DLDEVVRRFA 482 (559)
T ss_pred HHHHHHHHHH
Confidence 4555555553
No 248
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.54 E-value=0.071 Score=57.07 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=26.3
Q ss_pred ceeEEEecchhhhhcCC-ChHHHHHHHHhcC-CCccEEEEeccccHHHH
Q 007090 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVE 418 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~ 418 (618)
.+++|||||+|.+.... ....+..+++.+. ..+++++.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 46799999999875432 1233445555443 34555554444444443
No 249
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.53 E-value=0.019 Score=63.15 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=69.0
Q ss_pred HHHHhcCCceEEEecccccccCCcCCccEEEE--------cCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC---ccHH
Q 007090 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---KEAR 581 (618)
Q Consensus 513 ~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~--------~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~---~d~~ 581 (618)
-+.|+.|...|-|-..+++.||.+..-+.|+| ..+||+.+.-+|..||++|..+-.+--|.|+.. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 46799999999999999999999987666654 779999999999999999999666777777655 4788
Q ss_pred HHHHHHHHHHHcC
Q 007090 582 FAGELVNSLIAAG 594 (618)
Q Consensus 582 ~~~~i~~~l~~~~ 594 (618)
++.-+.+.|+..+
T Consensus 930 FAS~VAKRLESLG 942 (1300)
T KOG1513|consen 930 FASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888888765
No 250
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.52 E-value=0.035 Score=63.25 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
.|++-|++++.. ....+++.|..|||||.+. +.-+.+++... .-...++|+|+.|+..|..+.+.+.+.++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL-~~Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999864 3568899999999999864 44445555321 11234699999999999999999987754
No 251
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.25 Score=49.34 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=71.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEcccH--HHHHHHHHHHHHHHhhcCceEEEEECCCC
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPTR--ELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Ptr--~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (618)
.+..+++++++|+|||..+...+.. +.. .+.++. |-+.+. ....|| ..++...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~-------~~~~v~~i~~D~~ri~~~~ql----~~~~~~~~~~~~~------ 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG-------KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEVIA------ 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH-------cCCeEEEEecCCCCHHHHHHH----HHHhhhcCceEEe------
Confidence 4468899999999999864433322 211 133444 444332 344444 3343323333211
Q ss_pred hHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CChHHHHHHHHhcCCCccEEEEecccc-H
Q 007090 338 KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-R 415 (618)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~-~ 415 (618)
..++..+...+..- .....+++||||-+=+.... .....+..++....+..-++.+|||.. .
T Consensus 136 ---------------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 136 ---------------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ---------------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 13455555444321 11246789999999764321 223345555566666666778999864 4
Q ss_pred HHHHHHHHHc
Q 007090 416 KVEKLAREIL 425 (618)
Q Consensus 416 ~~~~l~~~~~ 425 (618)
.+...++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6667777764
No 252
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.46 E-value=0.067 Score=50.30 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=30.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 265 vl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
+++.|++|+|||.. .+-++..... +|.+++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l-~~~~~~~~~~-------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTF-ALQFLYAGLA-------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHH-HHHHHHHHHH-------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999974 3333333322 3666887754 35555666655554
No 253
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.43 E-value=0.23 Score=49.88 Aligned_cols=132 Identities=20% Similarity=0.310 Sum_probs=66.0
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc-c-cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-P-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~-P-tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
+-+++++++|+|||++..-.+ .++.. .+.+|+++. . .|.-+. +.+..++...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA-~~l~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d--- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA-NKLKK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD--- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC---
Confidence 567788999999998643333 22222 255566553 3 344332 2344455444544332211111
Q ss_pred HHHHHHcCCcEEEeChHHH-HHHHHccccccCceeEEEecchhhhhc-CCChHHHHHHHHhcC------CCccEEEEecc
Q 007090 341 QFKELKAGCEIVIATPGRL-IDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIR------PDRQTLLFSAT 412 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~------~~~q~i~~SAT 412 (618)
|..+ .+.+.. .....+++||||=+-++.. ......+..+...+. +..-++.++||
T Consensus 139 ---------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 ---------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred ---------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 1111 111111 1124577888887776432 112334445554444 56668888888
Q ss_pred ccHHHHHHHHHHc
Q 007090 413 MPRKVEKLAREIL 425 (618)
Q Consensus 413 ~~~~~~~l~~~~~ 425 (618)
........+..|.
T Consensus 202 ~~~~~~~~~~~f~ 214 (272)
T TIGR00064 202 TGQNALEQAKVFN 214 (272)
T ss_pred CCHHHHHHHHHHH
Confidence 7655444455543
No 254
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.13 Score=58.35 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
++-+.++||||+|||++....+..+.... .+.+|. |-+.|--.+ ..+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~---------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH---------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc----------
Confidence 56688999999999986433332222111 122443 444332211 13345555554454332
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CChHHHHHHHHhcCCCccEEEEeccccH-HHH
Q 007090 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR-KVE 418 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~~ 418 (618)
++.+|..+...+. .+..+++|+||=+=+.... .....+..+.....+...++.+|||... .+.
T Consensus 247 -----------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 -----------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -----------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 1235555555543 2335567777776653311 1122223333334455567777777643 344
Q ss_pred HHHHHH
Q 007090 419 KLAREI 424 (618)
Q Consensus 419 ~l~~~~ 424 (618)
..+..|
T Consensus 312 ~i~~~f 317 (767)
T PRK14723 312 EVVHAY 317 (767)
T ss_pred HHHHHH
Confidence 455555
No 255
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.092 Score=55.73 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=37.1
Q ss_pred CCccCCccccC---CCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCC
Q 007090 221 PRPVKTFEDCG---FSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291 (618)
Q Consensus 221 p~p~~~~~~~~---l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~ 291 (618)
-.|-..|+++| |+++..+.+... .+..|.-+.+-.++ +=+.+|+.+|+|+|||+. .-.+-.+++.+
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLi--ARqIGkMLNAr 283 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLI--ARQIGKMLNAR 283 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHH--HHHHHHHhcCC
Confidence 45667788874 566654444332 22223223332222 336799999999999975 33444455444
No 256
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.33 E-value=0.087 Score=60.30 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
|++-|++++.. ....+++.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|.++.+.+.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78889998754 456899999999999986 4444555553211 1235689999999999999999988765
No 257
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.31 E-value=0.04 Score=63.52 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..|++-|++++.. ....+++.|..|||||.+ +..-+.+++.... -...++|+|+.|+..|..+.+.+.++.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999854 346899999999999986 3444555554321 1234699999999999999999988765
No 258
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.29 E-value=0.058 Score=52.34 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=30.5
Q ss_pred cCceeEEEecchhhhhcCC-ChHHHHHHHHhcCC-CccEEEEeccccHHH
Q 007090 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKV 417 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~ 417 (618)
+..+++||||.+|.+.... +...+..+++.+.. ..++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4478899999999876432 34455566666643 456666665666543
No 259
>PTZ00293 thymidine kinase; Provisional
Probab=95.22 E-value=0.12 Score=49.34 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt 307 (618)
|+=-++.|||+||||...+-.+.++.. .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~--------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY--------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH--------cCCceEEEEec
Confidence 455688999999999753333333322 25668888885
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.18 E-value=0.19 Score=54.22 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=29.9
Q ss_pred CceeEEEecchhhhhcCC-ChHHHHHHHHhcC-CCccEEEEeccccHHHHH
Q 007090 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEK 419 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~ 419 (618)
.++++|+|||+|.+.... ....+..+++.+. ...|+|+.|.+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 467899999999876433 2344555655443 345666555555655543
No 261
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.12 E-value=0.054 Score=62.46 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..|+|-|++++.. ....+++.|..|||||.+. ..-+.+++.... -....+|+|+-|+..|..+.+.+.++.+
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVL-VHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999864 3468999999999999863 444455554211 1234699999999999999999988765
No 262
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.10 E-value=0.14 Score=56.67 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=30.8
Q ss_pred CceeEEEecchhhhhcCC-ChHHHHHHHHhcCC-CccEEEEeccccHHHH
Q 007090 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKVE 418 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~~ 418 (618)
.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 457899999999876443 23456666666644 4666665555555443
No 263
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.92 E-value=0.37 Score=51.66 Aligned_cols=129 Identities=20% Similarity=0.247 Sum_probs=64.0
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEccc-HHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
..++++|++|+|||++..-.+ .++.. .+.+++ |-+.+ |..+ .+.+..++...++.+........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~-------~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d--- 161 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKK-------KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKD--- 161 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccC---
Confidence 468899999999998643322 33322 133444 44444 3322 23344555444544321111111
Q ss_pred HHHHHHcCCcEEEeChHH-HHHHHHccccccCceeEEEecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHH
Q 007090 341 QFKELKAGCEIVIATPGR-LIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~-L~~~l~~~~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~ 418 (618)
|.. +.+.+.. +...++||||.+-+... ......+..+...+.+..-++.++|+......
T Consensus 162 ---------------~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av 222 (437)
T PRK00771 162 ---------------AVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK 222 (437)
T ss_pred ---------------HHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHH
Confidence 111 1222221 12237888888854321 11233444555555667777777887765555
Q ss_pred HHHHHH
Q 007090 419 KLAREI 424 (618)
Q Consensus 419 ~l~~~~ 424 (618)
..++.|
T Consensus 223 ~~a~~F 228 (437)
T PRK00771 223 NQAKAF 228 (437)
T ss_pred HHHHHH
Confidence 555554
No 264
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.25 Score=46.12 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=54.0
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
.=.++++||.||||...+-.+-++. ..+.++++..|...-- ++...+...-|.+.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~--------~~g~~v~vfkp~iD~R-------------~~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYK--------EAGMKVLVFKPAIDTR-------------YGVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHH--------HcCCeEEEEecccccc-------------cccceeeeccCCcc----
Confidence 3457899999999986333333332 2367789988843211 12233333333332
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 007090 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~ 383 (618)
.-++|-++..+.+.+....... .+++|.||||+-
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF 93 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF 93 (201)
T ss_pred ------cceecCChHHHHHHHHhcccCC-CcCEEEEehhHh
Confidence 3466777777888776543322 288999999995
No 265
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.85 E-value=0.33 Score=49.56 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=28.9
Q ss_pred cCceeEEEecchhhhhcCCChH-HHH-HHHHh-cCCCccEEEEeccccHHHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGFEP-QIR-SIVGQ-IRPDRQTLLFSATMPRKVEK 419 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~-~i~-~i~~~-~~~~~q~i~~SAT~~~~~~~ 419 (618)
+.++++||||+...-....|.. .+. .|+.. +.....|++.|-..+..+..
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 4578899999998533223332 343 44443 23556677777666555443
No 266
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.83 E-value=0.13 Score=53.12 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.2
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
-++|+.||+|+|||..
T Consensus 49 ~SmIl~GPPG~GKTTl 64 (436)
T COG2256 49 HSMILWGPPGTGKTTL 64 (436)
T ss_pred ceeEEECCCCCCHHHH
Confidence 3789999999999975
No 267
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.82 E-value=0.16 Score=54.79 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=16.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVL 281 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l 281 (618)
.++-++++|+||+|||++...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 356688999999999986433
No 268
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.80 E-value=0.091 Score=60.06 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=72.6
Q ss_pred EcCCCcccHHHH-HHhcCCCCCCCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 007090 449 VIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (618)
Q Consensus 449 ~~~~~~~k~~~l-~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~V 523 (618)
..+..+.|.... ...+.....+.+++|.+|+..-+...++.|++ .++++..+||+++..+|..++....+|...|
T Consensus 288 ~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~I 367 (681)
T PRK10917 288 QGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADI 367 (681)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCE
Confidence 334455565432 22222222355899999999988877777654 4789999999999999999999999999999
Q ss_pred EEecc-cccccCCcCCccEEEE
Q 007090 524 LIATD-VAARGLDIKSIKSVVN 544 (618)
Q Consensus 524 LVaT~-~~~~Gldi~~v~~VI~ 544 (618)
+|+|. .+...+.+.++..||.
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EEchHHHhcccchhcccceEEE
Confidence 99995 5556777888888884
No 269
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.78 E-value=0.14 Score=54.48 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=14.4
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.++++.|++|+|||.+
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 270
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.77 E-value=0.27 Score=50.58 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=24.5
Q ss_pred ceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
...+|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467899999998732323445556666655555555443
No 271
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.083 Score=57.07 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=33.0
Q ss_pred ccCCccccCCCHHHHHHHHH---CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 223 PVKTFEDCGFSTQLMHAISK---QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~---~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
|-.+|.+.|--..+...|.. ..+..|.-++.-++. .-..+|+|||+|+|||+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHH
Confidence 45788888766665555442 233344444433321 235799999999999975
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.70 E-value=0.34 Score=51.50 Aligned_cols=60 Identities=23% Similarity=0.200 Sum_probs=31.7
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE-cc-cHHHHHHHHHHHHHHHhhcCceEEEEE
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP-TRELAHQIYLETKKFAKSHGIRVSAVY 333 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl-~P-tr~La~q~~~~~~~~~~~~~~~~~~~~ 333 (618)
.-++++|++|+|||++..- |.+.+.. .|.+|+++ +- .|..|.++ ++.++...++.+....
T Consensus 101 ~vi~lvG~~GvGKTTtaaK--LA~~l~~------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTK--LAYYYQR------KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSY 162 (429)
T ss_pred eEEEEECCCCCCHHHHHHH--HHHHHHH------CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeec
Confidence 3578899999999975332 2222221 14455544 43 35555443 4444444455544333
No 273
>PRK09183 transposase/IS protein; Provisional
Probab=94.65 E-value=0.13 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.5
Q ss_pred HHHhcCCcEEEEeCCCCcHHHH
Q 007090 257 PIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 257 ~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
.++..+.++++.||+|+|||..
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHH
Confidence 3466788999999999999964
No 274
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.62 E-value=0.23 Score=60.62 Aligned_cols=124 Identities=19% Similarity=0.127 Sum_probs=77.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
++|+-|.+++. ..++++++.|..|||||.+.+--++..+... .+...+|+|+=|+..|..+.+++.+.....-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 36888999986 4688999999999999987665566655432 1224589999999999999998887654311
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccC--ceeEEEecchhh
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEADR 383 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~--~~~~iIvDEah~ 383 (618)
-. ........+.+..-...-|+|...+...+-+.....- ...+=|.||...
T Consensus 74 ~~------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hc------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 0000111111222235568898888654433332211 224456888774
No 275
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.60 E-value=0.18 Score=63.96 Aligned_cols=63 Identities=27% Similarity=0.272 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHH--HHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFV--LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~--l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~ 314 (618)
..+++.|++++..++.+ +-+++.|..|+|||.+.. +-.+..++. ..+..++.++||-..+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH------hcCCeEEEEeChHHHHHHH
Confidence 47899999999998865 567889999999997531 022222222 2367789999998877665
No 276
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.22 Score=51.47 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhcCC----cEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 248 PTSIQCQALPIILSGR----DIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~~----dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
++|+|...+..+.... -.++.||.|.|||..+ ..+...++
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHc
Confidence 4788999988777543 4789999999999753 33444444
No 277
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.57 E-value=0.18 Score=57.50 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 007090 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (618)
Q Consensus 452 ~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~ 529 (618)
+.+.|....+..+...+ .+.++||.+|+..-+..+.+.|++. +..+..+||+++..+|.........|..+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 33456555444433322 2458999999999999999999764 788999999999999999999999999999999963
Q ss_pred ccccCCcCCccEEEEcC
Q 007090 530 AARGLDIKSIKSVVNFD 546 (618)
Q Consensus 530 ~~~Gldi~~v~~VI~~~ 546 (618)
+- -+.+.++..||.-+
T Consensus 251 al-~~p~~~l~liVvDE 266 (679)
T PRK05580 251 AL-FLPFKNLGLIIVDE 266 (679)
T ss_pred Hh-cccccCCCEEEEEC
Confidence 32 24567788877543
No 278
>PF13173 AAA_14: AAA domain
Probab=94.56 E-value=0.38 Score=42.21 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=25.0
Q ss_pred ceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecc
Q 007090 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 412 (618)
.-.+|+|||+|.+- +|...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45689999999875 4566777776654 44555544433
No 279
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.53 E-value=0.28 Score=52.95 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=28.5
Q ss_pred ceeEEEecchhhhhcCC-ChHHHHHHHHhcCC-CccEEEEeccccHHHHHH
Q 007090 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKVEKL 420 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~-~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~~~l 420 (618)
.+++|+|||+|.+.+.. ....+..+++.+.. ..++|+.|...|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 56799999999876442 22345555554433 345555554555555444
No 280
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.46 E-value=0.11 Score=55.09 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHH
Q 007090 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~ 279 (618)
+.......+..+..++++++.|++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44556666777889999999999999999653
No 281
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.45 E-value=0.53 Score=42.90 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=35.7
Q ss_pred cCceeEEEecchhhhhcCCC--hHHHHHHHHhcCCCccEEEEeccccHHHHHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLA 421 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~ 421 (618)
...+++||+||+-..+..++ ...+..++..-+...-+|+.+-.+|+.+..++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 45789999999998877764 45666777765555555555556676655543
No 282
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.43 E-value=0.52 Score=52.17 Aligned_cols=136 Identities=20% Similarity=0.203 Sum_probs=80.8
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc--CceEEEEECCCC
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGMS 337 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~--~~~~~~~~gg~~ 337 (618)
+..+-.++..|=-.|||.... +++..++.. -.|-++++++|.+..+..+++++...+... +-.+..+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 345677888899999998543 555544422 127789999999999999999998876532 111212222 11
Q ss_pred hHHHHHHHHcC--CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 338 KLDQFKELKAG--CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 338 ~~~~~~~l~~~--~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
. ...+..| +-|.++|- -..+..--..++++|||||+-+.... ...+...+.. .+.++|++|.|.+
T Consensus 325 I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~a-l~~ilp~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDA-VQTIMGFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred E---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHH-HHHHHHHHhc--cCccEEEEecCCC
Confidence 0 0011223 24555532 01122223468999999999876433 2233333333 3788999998853
No 283
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.43 E-value=0.35 Score=54.51 Aligned_cols=143 Identities=19% Similarity=0.265 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHHHHhcCC--cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 245 YEKPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~--dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.+.+..-|.+.+..++..+ -+++.|.=|=|||.+.-+.+ ..+.... ....++|.+|+.+.++.+...+.+-+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 3445555555666666553 57889999999998755444 2222211 03468999999999988888877776
Q ss_pred hhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~ 401 (618)
...|++-.+........ .... +...|=+-+|.... . .-++||||||=.|- .+.+..++...
T Consensus 286 ~~lg~~~~v~~d~~g~~---~~~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp----lplL~~l~~~~- 347 (758)
T COG1444 286 EFLGYKRKVAPDALGEI---REVSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP----LPLLHKLLRRF- 347 (758)
T ss_pred HHhCCccccccccccce---eeecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC----hHHHHHHHhhc-
Confidence 66665432222111000 0011 12234455553221 1 16789999998754 55666776654
Q ss_pred CCccEEEEecccc
Q 007090 402 PDRQTLLFSATMP 414 (618)
Q Consensus 402 ~~~q~i~~SAT~~ 414 (618)
+.++||.|+.
T Consensus 348 ---~rv~~sTTIh 357 (758)
T COG1444 348 ---PRVLFSTTIH 357 (758)
T ss_pred ---CceEEEeeec
Confidence 3688999984
No 284
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.38 E-value=0.32 Score=51.72 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=67.6
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
..++.+.++|+||+|||+.....+-.++... +.....+|.+.+.-.+ ..+.+..++..+++.+...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v------- 254 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI------- 254 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC-------
Confidence 3567789999999999986433322222221 1122345666664332 2334555655555544322
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CChHHHHHHHHhcCCCccEEEEeccccH-HH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR-KV 417 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~ 417 (618)
.++..+...+. .+...++++||.+=+.... .....+..+.....+...++.+|||... .+
T Consensus 255 --------------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~ 316 (420)
T PRK14721 255 --------------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL 316 (420)
T ss_pred --------------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH
Confidence 22323322222 2456678888886321100 0112222322222344567889999754 45
Q ss_pred HHHHHHHc
Q 007090 418 EKLAREIL 425 (618)
Q Consensus 418 ~~l~~~~~ 425 (618)
...+..|-
T Consensus 317 ~~~~~~f~ 324 (420)
T PRK14721 317 DEVISAYQ 324 (420)
T ss_pred HHHHHHhc
Confidence 55565553
No 285
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.35 E-value=0.56 Score=48.85 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=61.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeE-EEEccc-HHH-HHHHHHHHHHHHhhcCceEEEEECCCC
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-REL-AHQIYLETKKFAKSHGIRVSAVYGGMS 337 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v-LIl~Pt-r~L-a~q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (618)
.++.++++||+|+|||+...-.+ .++..+ +.++ +|-+-| |.- +.| ++.++...++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA-~~l~~~-------g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG-WQLLKQ-------NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE-------
Confidence 45678899999999997633333 222221 3334 444533 332 233 3444443344322
Q ss_pred hHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CChHHHHHHHHhcCCCccEEEEeccccH-
Q 007090 338 KLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR- 415 (618)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~- 415 (618)
+..+|..+...+..-. ....+++|+||=+=+.... .....+..+...+.+..-.+.+||+...
T Consensus 266 --------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~ 330 (407)
T PRK12726 266 --------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSA 330 (407)
T ss_pred --------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHH
Confidence 1234555544443111 1234677777777553211 1222333444444444445566765543
Q ss_pred HHHHHHHHH
Q 007090 416 KVEKLAREI 424 (618)
Q Consensus 416 ~~~~l~~~~ 424 (618)
.+...+..|
T Consensus 331 d~~~i~~~f 339 (407)
T PRK12726 331 DVMTILPKL 339 (407)
T ss_pred HHHHHHHhc
Confidence 344444443
No 286
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.34 E-value=0.27 Score=49.12 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.++++.||+|+|||..
T Consensus 43 ~~vll~GppGtGKTtl 58 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTV 58 (261)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 4789999999999975
No 287
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.23 E-value=0.55 Score=48.14 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHHHHh----cCC---cEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 246 EKPTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~---dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
..++|+|..++..+. +++ -+++.|+.|.||+..+ ..+...++.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhC
Confidence 467889998887765 343 4789999999999743 444455554
No 288
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.21 E-value=0.043 Score=63.71 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=80.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p 548 (618)
...++|||+.-....+-+...+...++.+..--+ .++-...+..|++ -..+|+-+...+-|+|+-.+.+|+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 4568999999988888888888777665554443 3344566667766 44467788888999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCeE-EEEEec
Q 007090 549 RDMDMHVHRIGRTGRAGDKDGT-AYTLVT 576 (618)
Q Consensus 549 ~~~~~y~Qr~GR~gR~g~~~g~-~~~l~~ 576 (618)
.|+..-.|.+||++|.|++..+ ++.|+-
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V~~fiv 1324 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFVHRFIV 1324 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhhhhhhh
Confidence 9999999999999999955444 444443
No 289
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.19 E-value=0.12 Score=45.25 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.5
Q ss_pred ceeEEEecchhhhhcCC
Q 007090 372 RVTYLVLDEADRMFDLG 388 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~ 388 (618)
...+|+|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999877553
No 290
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.18 E-value=0.3 Score=53.18 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46899999999999974
No 291
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.16 E-value=0.13 Score=59.42 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..|+|-|++++.. ....+++.|..|||||.+. +.-+.+++..... ...++|+++-|+..|..+.+.+.++++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l-~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVL-THRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHH-HHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999864 3568999999999999864 3344455543211 124689999999999999999887764
No 292
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.13 E-value=0.38 Score=48.34 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=32.6
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccc---cCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ---KEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~---~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.+++++|+||.|||.+ +--+... .+... ...-|.++|-+|...-....+..+-..
T Consensus 62 p~lLivG~snnGKT~I--i~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI--IERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CceEEecCCCCcHHHH--HHHHHHH--CCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 4899999999999974 2222221 12111 122377778888776665555554443
No 293
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.11 E-value=0.18 Score=55.38 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=69.6
Q ss_pred CcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 453 DAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 453 ~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
.+.|....+..+...+. ++++||.+|+..-+..+++.|++. +..+..+||+++..+|.++.....+|..+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 34565555444433332 458999999999999999999764 7789999999999999999999999999999999543
Q ss_pred cccCCcCCccEEEE
Q 007090 531 ARGLDIKSIKSVVN 544 (618)
Q Consensus 531 ~~Gldi~~v~~VI~ 544 (618)
- =+.+.++..||.
T Consensus 87 l-f~p~~~l~lIIV 99 (505)
T TIGR00595 87 L-FLPFKNLGLIIV 99 (505)
T ss_pred H-cCcccCCCEEEE
Confidence 2 234667777774
No 294
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.11 E-value=0.27 Score=51.73 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=33.9
Q ss_pred ceeEEEecchhhhhcC-CChHHHHHHHHhcCCCc-cEEEEeccccHHHH
Q 007090 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDR-QTLLFSATMPRKVE 418 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~-q~i~~SAT~~~~~~ 418 (618)
++++++||.++.+... .+...+..+++.+.... |+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999987755 35566667777776544 77777767776654
No 295
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.03 E-value=0.66 Score=45.37 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=31.8
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
-.+.-+++.+++|+|||+. ++.++..... ++.++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl-~~~~~~~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSIL-SQRLAYGFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 3467889999999999974 2333444432 25667777743 3334444444443
No 296
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.98 E-value=1.3 Score=49.26 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=44.0
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
+..+-.++.+|=|.|||.+..+ ++.++... .+.+++|++|...-+.++.+.+.+.+...
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi-~l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAI-ILAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHH-HHHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 4556778889999999986433 33343321 26779999999999999999988888643
No 297
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.92 E-value=0.47 Score=49.23 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=24.2
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 412 (618)
....+|||||+|.+... ....+..++...+....+|+ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45679999999986432 23445566665555555444 444
No 298
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.85 E-value=0.78 Score=51.90 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=24.7
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.++.++||||+|+|.... .+.+.+++..-+....+ +|++|-
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~F-ILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKF-ILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEE-EEEECC
Confidence 467899999999876433 23445555554444444 444443
No 299
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.81 E-value=0.48 Score=50.80 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.7
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.||+|+|||..
T Consensus 38 ~ilL~GppGtGKTtL 52 (413)
T PRK13342 38 SMILWGPPGTGKTTL 52 (413)
T ss_pred eEEEECCCCCCHHHH
Confidence 789999999999975
No 300
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.79 E-value=0.19 Score=56.92 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=71.1
Q ss_pred CCCcccHHH-HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEE
Q 007090 451 PSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (618)
Q Consensus 451 ~~~~~k~~~-l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLV 525 (618)
+....|... ++..+.....+.+++|.+|+..-+..+++.+++ .++++..+||+++..+|..++....+|...|+|
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiV 343 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVV 343 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEE
Confidence 444555443 222232222356899999999988888777664 378999999999999999999999999999999
Q ss_pred ecc-cccccCCcCCccEEEE
Q 007090 526 ATD-VAARGLDIKSIKSVVN 544 (618)
Q Consensus 526 aT~-~~~~Gldi~~v~~VI~ 544 (618)
+|. .+...+.+.++..||.
T Consensus 344 gT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVII 363 (630)
T ss_pred ecHHHHhccccccccceEEE
Confidence 995 4456677888888774
No 301
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.77 E-value=0.24 Score=50.83 Aligned_cols=58 Identities=29% Similarity=0.239 Sum_probs=37.9
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 248 PTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 248 ~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
+++.|...+.. +..+.+++++|+||||||+. +-.++..+...+ .+-+++++=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 56777766654 44667999999999999974 344444443221 134577777777763
No 302
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.75 E-value=0.77 Score=52.57 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=13.5
Q ss_pred CceeEEEecchhhhhcC
Q 007090 371 SRVTYLVLDEADRMFDL 387 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~ 387 (618)
..+.+|||||+|.+...
T Consensus 868 r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK 884 (1164)
T ss_pred ccceEEEeehHhhhCcc
Confidence 34678999999998754
No 303
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.36 Score=52.43 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=25.7
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHH
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 416 (618)
...+.++||||+|.|....+ +.+.+.+..-++...+ +|.+|-+..
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~f-Ilatte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKF-ILATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEE-EEEeCChHH
Confidence 35788999999998754332 2344455544444333 444454333
No 304
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=1.4 Score=46.21 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=17.1
Q ss_pred HHHHhcC--CcEEEEeCCCCcHHHH
Q 007090 256 LPIILSG--RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 256 i~~i~~~--~dvl~~~~TGsGKT~~ 278 (618)
.|++..+ .++++.|+||+|||.+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTAT 58 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHH
Confidence 3444433 3699999999999976
No 305
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=0.69 Score=51.51 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=24.6
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
..++.++||||+|+|....+ +.+.+.+..-+....+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 35688999999998764433 344445554344454454443
No 306
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.54 E-value=0.13 Score=52.11 Aligned_cols=59 Identities=24% Similarity=0.207 Sum_probs=42.3
Q ss_pred CCCCCcHHHHHHHHHHhcCC-cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 244 GYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~-dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
.+..+++-|...+-.+..++ +++++|.||||||+. +-++..... ..-+++.+--|.+|-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~-------~~eRvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID-------SDERVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC-------CcccEEEEeehhhhc
Confidence 45778889999888877766 999999999999964 333322211 123688888887774
No 307
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.48 E-value=0.2 Score=57.97 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=27.4
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
..++.++||||+|+|.... .+.+.+++...+....+|+.+ |-+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~~ 161 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEPD 161 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CChh
Confidence 3578899999999976433 335556666555555445444 5433
No 308
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.44 E-value=0.37 Score=44.52 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=35.0
Q ss_pred cCceeEEEecchhhhhcCCC--hHHHHHHHHhcCCCccEEEEeccccHHHHHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLA 421 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~ 421 (618)
-..+++||+||+-..++.++ ...+..++..-++...+|+..-.+|+.+..++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 35789999999998888774 34566777665555555555555666655543
No 309
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.43 E-value=0.53 Score=49.80 Aligned_cols=142 Identities=17% Similarity=0.111 Sum_probs=80.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHH
Q 007090 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (618)
Q Consensus 236 l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~ 315 (618)
++..+.+ .+..+...|..+.-..-.|.- .+.|=.|||||... ++-+.++... ...-+++|.+-|+.|+.++.
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~L-a~Kaa~lh~k-----nPd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELL-AHKAAELHSK-----NPDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHH-HHHHHHHhcC-----CCCceEEEEeehHHHHHHHH
Confidence 3444433 344566677776644445544 56788999999753 3333444332 23567999999999999999
Q ss_pred HHHHHHHhhc--------CceEEEEECCCChHHH---HHHHHcCCcEEEeChHHHHHHH----HccccccCceeEEEecc
Q 007090 316 LETKKFAKSH--------GIRVSAVYGGMSKLDQ---FKELKAGCEIVIATPGRLIDML----KMKALTMSRVTYLVLDE 380 (618)
Q Consensus 316 ~~~~~~~~~~--------~~~~~~~~gg~~~~~~---~~~l~~~~dIiv~Tp~~L~~~l----~~~~~~l~~~~~iIvDE 380 (618)
..+.+|+-.. .+.+..-.||.+.... .+....-..+-++--+.-.+.. -....+..-+++|.|||
T Consensus 224 ~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE 303 (660)
T COG3972 224 TLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecc
Confidence 9999988432 2334444556554332 2222222233333211111111 11222356789999999
Q ss_pred hhhhh
Q 007090 381 ADRMF 385 (618)
Q Consensus 381 ah~~~ 385 (618)
++-+-
T Consensus 304 ~QDFP 308 (660)
T COG3972 304 SQDFP 308 (660)
T ss_pred cccCC
Confidence 99643
No 310
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.40 E-value=0.8 Score=44.63 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=29.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~ 320 (618)
.|..+++.+++|+|||... +.++.+.+.. +..++++.- -+...++...+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~-~~~~~~~~~~-------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFC-LHFAYKGLRD-------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHH-HHHHHHHHhc-------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 4678899999999999743 3333333221 445666653 2333444444333
No 311
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.36 E-value=1.3 Score=47.02 Aligned_cols=127 Identities=16% Similarity=0.190 Sum_probs=64.6
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeE-EEEccc-HHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v-LIl~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
+.-++++|++|+|||++..-.+..+... .|.+| |+-+-+ |..+.+ .+..++...++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~-------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP-------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee--------
Confidence 3457889999999998644333222222 13344 344444 444432 355555444443211
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-CCChHHHHHHHHhcC---CCccEEEEeccccH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIR---PDRQTLLFSATMPR 415 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~---~~~q~i~~SAT~~~ 415 (618)
+..+..+...+. -..+++||||=+-++.. ..-...+..++..+. +...++.+|||...
T Consensus 285 -------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 285 -------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred -------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 011222333332 14678899997654321 112233344444432 23457888999876
Q ss_pred -HHHHHHHHH
Q 007090 416 -KVEKLAREI 424 (618)
Q Consensus 416 -~~~~l~~~~ 424 (618)
.+...+..|
T Consensus 347 ~~~~~~~~~f 356 (432)
T PRK12724 347 HHTLTVLKAY 356 (432)
T ss_pred HHHHHHHHHh
Confidence 555555555
No 312
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.35 E-value=0.18 Score=50.90 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.1
Q ss_pred cCCcEEEEeCCCCcHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFV 280 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~ 280 (618)
.++.++++||||+|||++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999997643
No 313
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.32 E-value=0.25 Score=57.99 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=73.4
Q ss_pred EEcCCCcccHHHHHH-hcCCCCCCCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 007090 448 HVIPSDAEKLPWLLE-KLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (618)
Q Consensus 448 ~~~~~~~~k~~~l~~-~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~ 522 (618)
...+....|...... .+.......+++|.+||..-+...++.|++ .++.+..++|..+..++.+++..+..|+..
T Consensus 477 l~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d 556 (926)
T TIGR00580 477 VCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID 556 (926)
T ss_pred EECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce
Confidence 334445566543322 222222356899999999999988887765 367888999999999999999999999999
Q ss_pred EEEecc-cccccCCcCCccEEEE
Q 007090 523 VLIATD-VAARGLDIKSIKSVVN 544 (618)
Q Consensus 523 VLVaT~-~~~~Gldi~~v~~VI~ 544 (618)
|+|+|. .+...+.+.++..||.
T Consensus 557 IVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 557 ILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EEEchHHHhhCCCCcccCCEEEe
Confidence 999995 5556788888888884
No 314
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.29 E-value=0.37 Score=45.20 Aligned_cols=144 Identities=16% Similarity=0.110 Sum_probs=71.2
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
+....+++..++|.|||.+++-.++..+ +.|.+|+|+.=.+--. -..+...+....++.. ...|....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~--------g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~--~~~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV--------GHGKKVGVVQFIKGAW--STGERNLLEFGGGVEF--HVMGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH--------HCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEE--EECCCCCc
Confidence 3556899999999999998766666554 2366777774322110 0111122211112322 22222110
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCC--hHHHHHHHHhcCCCccEEEEecc-ccHH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSAT-MPRK 416 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SAT-~~~~ 416 (618)
-. ....+--.......+... ...+.-..+++||+||+-..++.++ ...+..++..- |...-|++|+. +|+.
T Consensus 88 ~~----~~~~~e~~~~~~~~~~~a-~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r-p~~~evVlTGR~~p~~ 161 (191)
T PRK05986 88 WE----TQDRERDIAAAREGWEEA-KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR-PGMQHVVITGRGAPRE 161 (191)
T ss_pred cc----CCCcHHHHHHHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC-CCCCEEEEECCCCCHH
Confidence 00 000000000111111111 1122235789999999998888874 45566777664 44445555554 5655
Q ss_pred HHHHH
Q 007090 417 VEKLA 421 (618)
Q Consensus 417 ~~~l~ 421 (618)
+-.++
T Consensus 162 Lie~A 166 (191)
T PRK05986 162 LIEAA 166 (191)
T ss_pred HHHhC
Confidence 55443
No 315
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=0.72 Score=53.17 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=25.4
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHH
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 416 (618)
.++.++||||||+|.... .+.+.+++..-+....+|+ ..|-+..
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFIL-aTTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLL-ATTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEE-ECCCchh
Confidence 467899999999875322 3344555554444444444 3444443
No 316
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.15 E-value=0.44 Score=46.72 Aligned_cols=90 Identities=11% Similarity=0.230 Sum_probs=65.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCC----ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcc-cCCCCC
Q 007090 494 GFKAAALHGDKDQASRMEILQKFKSGV----YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG-RAGDKD 568 (618)
Q Consensus 494 ~~~~~~l~g~~~~~~r~~~~~~F~~g~----~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~g-R~g~~~ 568 (618)
++.+..++++.+... -.+..+. ..|+|.-+.++||+.++|+....+...+.+.+++.||.-=.| |.| -.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~g-Y~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPG-YE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcc-cc
Confidence 588888887665433 3344443 789999999999999999999999999999999999865444 665 34
Q ss_pred eEEEEEecCccHHHHHHHHHH
Q 007090 569 GTAYTLVTQKEARFAGELVNS 589 (618)
Q Consensus 569 g~~~~l~~~~d~~~~~~i~~~ 589 (618)
..|..++++.-......|...
T Consensus 184 dl~Ri~~~~~l~~~f~~i~~~ 204 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIAEA 204 (239)
T ss_pred cceEEecCHHHHHHHHHHHHH
Confidence 567777766555555555444
No 317
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.93 Score=50.60 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=25.4
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
.++.++||||+|+|.... ...+.+++...+.... ++|++|-+.
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~-FILaTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVK-FLFATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcE-EEEEECChH
Confidence 467899999999875433 3345555555444443 444445433
No 318
>PRK04195 replication factor C large subunit; Provisional
Probab=93.11 E-value=0.48 Score=51.95 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999965
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=93.10 E-value=1.4 Score=47.29 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.1
Q ss_pred CcEEEEeCCCCcHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~ 279 (618)
.-+++++++|+|||++.
T Consensus 101 ~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEEECCCCCcHHHHH
Confidence 35788999999999864
No 320
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.10 E-value=0.88 Score=45.63 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=55.7
Q ss_pred HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEEC-CCC
Q 007090 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG-GMS 337 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g-g~~ 337 (618)
+..|.-+++.|++|+|||.. ++.++.++... .+.+|+++.- -.-..++...+..... ++....... ...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~~------~g~~vl~iS~-E~~~~~~~~r~~~~~~--~~~~~~~~~~~~~ 96 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTF-LREYALDLITQ------HGVRVGTISL-EEPVVRTARRLLGQYA--GKRLHLPDTVFIY 96 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHH-HHHHHHHHHHh------cCceEEEEEc-ccCHHHHHHHHHHHHh--CCCcccCCccccc
Confidence 34667889999999999974 33333333221 2556777653 1223344444433221 222111000 001
Q ss_pred hHHHH----HHHHcCCcEE-Ee-----ChHHHHHHHHccccccCceeEEEecchhhhhcC
Q 007090 338 KLDQF----KELKAGCEIV-IA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (618)
Q Consensus 338 ~~~~~----~~l~~~~dIi-v~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~ 387 (618)
....+ ..+.....+. +- |...+...+..-. .-..+++||||..+.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 97 TLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred cHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 11111 1222112222 21 4455555543211 1236789999999987643
No 321
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.10 E-value=0.45 Score=51.60 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=54.9
Q ss_pred CCCHH-HHHHHHHCCCCCCc----HHHHHHHHHHh--cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 231 GFSTQ-LMHAISKQGYEKPT----SIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 231 ~l~~~-l~~~l~~~~~~~~~----~~Q~~~i~~i~--~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
++..+ |+..|.+..-.+++ .+|.+-=.+|. .++-++++|..|||||.+++--+...++..+..- . +..|||
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l-~-~k~vlv 265 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL-Q-AKPVLV 265 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc-c-cCceEE
Confidence 44444 55666665444544 34555545555 3457899999999999876544433344443221 1 233999
Q ss_pred EcccHHHHHHHHHHHHHH
Q 007090 304 CAPTRELAHQIYLETKKF 321 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~ 321 (618)
+.|.+.+..-+.+.+-.+
T Consensus 266 l~PN~vFleYis~VLPeL 283 (747)
T COG3973 266 LGPNRVFLEYISRVLPEL 283 (747)
T ss_pred EcCcHHHHHHHHHhchhh
Confidence 999999887766655444
No 322
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.09 E-value=0.22 Score=56.32 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=73.5
Q ss_pred cccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhC-C-CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 454 ~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~-~-~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
+.|...++.++...+. ++++||.+|.......+...|+.. + ..+..+|++++..+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4677777777766554 447999999999999999999864 4 679999999999999999999999999999999643
Q ss_pred cccCCcCCccEEEEcC
Q 007090 531 ARGLDIKSIKSVVNFD 546 (618)
Q Consensus 531 ~~Gldi~~v~~VI~~~ 546 (618)
- =.-+++...||.-+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 23455666777433
No 323
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.08 E-value=1.9 Score=43.80 Aligned_cols=130 Identities=20% Similarity=0.289 Sum_probs=75.0
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc-cc-HHHHHHHHHHHHHHHhhcCceEEEE-ECCCChHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-PT-RELAHQIYLETKKFAKSHGIRVSAV-YGGMSKLD 340 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~-Pt-r~La~q~~~~~~~~~~~~~~~~~~~-~gg~~~~~ 340 (618)
-++++|-.|+|||++ +.=|.+.+.+ +|.+|++.+ -| |+-|. +.+.-|+...|+.++.. .|+.+-.-
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~~------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAaV 209 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLKQ------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAAV 209 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHHH------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHHH
Confidence 468899999999986 4545555543 366666554 43 44443 33555555557766552 23222211
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CChHHHHHHHHhcCCCc------cEEEEeccc
Q 007090 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDR------QTLLFSATM 413 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~~~~------q~i~~SAT~ 413 (618)
- .+.++. -.-+.+++|++|=|=||.+. +....+.+|.+-+.+.. -++.+=||.
T Consensus 210 a------------------fDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 210 A------------------FDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred H------------------HHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 1 122221 12356788888988887654 24455666666665543 344447888
Q ss_pred cHHHHHHHHHH
Q 007090 414 PRKVEKLAREI 424 (618)
Q Consensus 414 ~~~~~~l~~~~ 424 (618)
-.+.-.-++.|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 77665556655
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.05 E-value=0.37 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.2
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
-++++.+|+|.|||++ +.+|.|
T Consensus 49 P~liisGpPG~GKTTs--i~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTS--ILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhH--HHHHHH
Confidence 3789999999999986 444444
No 325
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.01 E-value=0.72 Score=49.88 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=83.4
Q ss_pred CCCcHHHHHHHHHHh----------cCCcEEEEeCCCCcHHHHHH-HHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----------SGRDIIGIAKTGSGKTAAFV-LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----------~~~dvl~~~~TGsGKT~~~~-l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~ 314 (618)
..+-|+|.-++-.++ ..+..++..|=+-|||.... +.+...+... ..+-.+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 356799999998887 11356888888889996433 2222222221 3467789999999999988
Q ss_pred HHHHHHHHhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHcc--ccccCceeEEEecchhhhhcCCChH
Q 007090 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLGFEP 391 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~--~~~l~~~~~iIvDEah~~~~~~~~~ 391 (618)
...++..+.... +.... ..+.. +..|++.--...+..+..+ ...-.+..+.||||.|.....+ .
T Consensus 135 F~~ar~mv~~~~----------~l~~~-~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~ 201 (546)
T COG4626 135 FNPARDMVKRDD----------DLRDL-CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--D 201 (546)
T ss_pred hHHHHHHHHhCc----------chhhh-hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--H
Confidence 888887665332 00000 00000 0112211111112222221 2223457899999999865442 3
Q ss_pred HHHHHHHhc--CCCccEEEEecc
Q 007090 392 QIRSIVGQI--RPDRQTLLFSAT 412 (618)
Q Consensus 392 ~i~~i~~~~--~~~~q~i~~SAT 412 (618)
.+..+...+ +++.+++..|..
T Consensus 202 ~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 202 MYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHhhhccCcCceEEEEecC
Confidence 444444433 567777777753
No 326
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.98 E-value=0.42 Score=47.01 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=33.3
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|..+++.|++|+|||+.. +.++...+. +|.++++++ +.+-..++.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la-~~~l~~~~~-------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFS-QQFLWNGLQ-------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 4568899999999999743 333333222 256678776 345566676666654
No 327
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.97 E-value=0.43 Score=51.41 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=13.3
Q ss_pred EEEEeCCCCcHHHHH
Q 007090 265 IIGIAKTGSGKTAAF 279 (618)
Q Consensus 265 vl~~~~TGsGKT~~~ 279 (618)
+|++||.|+|||.++
T Consensus 43 ~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 43 YIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEECCCCCCHHHHH
Confidence 699999999999763
No 328
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.94 E-value=1.7 Score=43.34 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHh----cCC-cEEEEeCCCCcHHHH
Q 007090 248 PTSIQCQALPIIL----SGR-DIIGIAKTGSGKTAA 278 (618)
Q Consensus 248 ~~~~Q~~~i~~i~----~~~-dvl~~~~TGsGKT~~ 278 (618)
+++.+.+++..+. .+. .+++.|++|+|||+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4455555555443 233 578999999999975
No 329
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.94 E-value=2 Score=44.23 Aligned_cols=142 Identities=16% Similarity=0.127 Sum_probs=74.8
Q ss_pred CcHHHHHHHHHHhcCCcE------EEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 248 PTSIQCQALPIILSGRDI------IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~~dv------l~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.+..|...+..++..++. ++.|.+|+|||.. +-.+ ++.. +-..+++.+. -|..+.--+.++
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~--~r~~---l~~~------n~~~vw~n~~--ecft~~~lle~I 76 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL--VRQL---LRKL------NLENVWLNCV--ECFTYAILLEKI 76 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH--HHHH---Hhhc------CCcceeeehH--HhccHHHHHHHH
Confidence 456788888888866543 8899999999954 3322 2211 2224666552 133444445555
Q ss_pred HhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhcCC--ChHHHHHHH
Q 007090 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLG--FEPQIRSIV 397 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~~~~iIvDEah~~~~~~--~~~~i~~i~ 397 (618)
+...+ .+-..|......+. +...+...+.+ ........-++|+|-|+.+.+++ ..+.+..+.
T Consensus 77 L~~~~---~~d~dg~~~~~~~e-----------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 77 LNKSQ---LADKDGDKVEGDAE-----------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLY 142 (438)
T ss_pred HHHhc---cCCCchhhhhhHHH-----------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHH
Confidence 43322 00001111111000 11112222222 11112345689999999998886 334444555
Q ss_pred HhcCCCccEEEEeccccHH
Q 007090 398 GQIRPDRQTLLFSATMPRK 416 (618)
Q Consensus 398 ~~~~~~~q~i~~SAT~~~~ 416 (618)
..++...-.+++|+++++.
T Consensus 143 el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 143 ELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhCCCceEEEEeccccHH
Confidence 5555555677888988764
No 330
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.90 E-value=0.54 Score=50.80 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=32.7
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|.-+++.+++|+|||+. ++-+...+.. .+.++|++.- .+...|+...+.++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 346778999999999974 3333333322 2556888764 45555666655554
No 331
>PHA00729 NTP-binding motif containing protein
Probab=92.88 E-value=1 Score=43.47 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=41.9
Q ss_pred CcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcC-CCh----HHHHHHHHhcCCCccEEEEeccccHHHHHHHHH
Q 007090 349 CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (618)
Q Consensus 349 ~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~-~~~----~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~ 423 (618)
...++.+...|...+........+++++|||++=.-+.. .|. .....+...++...+++.+...-+..+...++.
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 345555555665555432212235678999994321111 111 223344455555567788888777777777666
Q ss_pred Hc
Q 007090 424 IL 425 (618)
Q Consensus 424 ~~ 425 (618)
..
T Consensus 139 Rg 140 (226)
T PHA00729 139 KG 140 (226)
T ss_pred CC
Confidence 43
No 332
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.87 E-value=0.14 Score=56.77 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHH-HHHHHHH
Q 007090 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY-LETKKFA 322 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~-~~~~~~~ 322 (618)
...+|+|...+..+... +.++++.++-+|||.+. +-++.+.+.+. ...+|++.||..+|..+. ..+..+.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 46789999999888755 68999999999999853 33333333321 233799999999999887 3344443
Q ss_pred hhcC-ceEEEEEC----CCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 323 KSHG-IRVSAVYG----GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 323 ~~~~-~~~~~~~g----g~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
.... ++ ..+.. ........+ .+.|..|.++.-+.- ..+.-..+.+|++||++.+-
T Consensus 88 ~~sp~l~-~~~~~~~~~~~~~t~~~k-~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLR-RKLSPSKSRDSGNTILYK-RFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHH-HHhCchhhcccCCchhhe-ecCCCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 3211 11 00111 011111111 222445555432111 12223467899999999874
No 333
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.86 E-value=1.6 Score=46.74 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=31.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeE-EEEcccHHHHHHHHHHHHHHHhhcCceEEEE
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v-LIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 332 (618)
-+++++++|+|||++..-.+ .++... .+.++ ||-+-++-.+ ..+.+..++...++.+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA-~~l~~~------~g~kV~lV~~D~~R~~--a~~QL~~~a~~~gvp~~~~ 161 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA-YYLKKK------QGKKVLLVACDLYRPA--AIEQLKVLGQQVGVPVFAL 161 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHHh------CCCeEEEEeccccchH--HHHHHHHHHHhcCCceEec
Confidence 57889999999998643332 222211 13334 4555544332 1223444554456554443
No 334
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.84 E-value=0.67 Score=48.34 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=25.6
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
...+.++||||||.|-... .+.+.+.+..-+....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999875332 345666666644445555554
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.83 E-value=0.4 Score=54.15 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=37.6
Q ss_pred eeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 373 VTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 373 ~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
.-++|+|..|.+.+......+..++++.+++.+.++.|-+-|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3589999999999988888899999999999999988877653
No 336
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=1.2 Score=44.15 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=81.9
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-----cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccC
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-----DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~-----dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (618)
+|-..|.+..--....++|+..-+ -|+ -+|.++.|+ .+++.+|+|+||+ |+.-+.....
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVATEA-------- 190 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVATEA-------- 190 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHhhc--------
Confidence 555677775333334444443211 111 145677774 6899999999999 5555544432
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
+ ...+-+.+..|+..|.-+-.++.+. ++ .+-+ -+..++|
T Consensus 191 -n-STFFSvSSSDLvSKWmGESEkLVkn--------------------LF--------------emAR-----e~kPSII 229 (439)
T KOG0739|consen 191 -N-STFFSVSSSDLVSKWMGESEKLVKN--------------------LF--------------EMAR-----ENKPSII 229 (439)
T ss_pred -C-CceEEeehHHHHHHHhccHHHHHHH--------------------HH--------------HHHH-----hcCCcEE
Confidence 1 3677778888888887666555431 11 1111 1245689
Q ss_pred EecchhhhhcCCC---hHHHHH----HHHhcC----CCccEEEEeccccHHH-HHHHHHHc
Q 007090 377 VLDEADRMFDLGF---EPQIRS----IVGQIR----PDRQTLLFSATMPRKV-EKLAREIL 425 (618)
Q Consensus 377 IvDEah~~~~~~~---~~~i~~----i~~~~~----~~~q~i~~SAT~~~~~-~~l~~~~~ 425 (618)
.|||+|.++...- ....+. ++-+++ .+--++.+.||..|-+ ..-+++.+
T Consensus 230 FiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRF 290 (439)
T KOG0739|consen 230 FIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRF 290 (439)
T ss_pred EeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHh
Confidence 9999998765431 112222 222222 3446888999975543 33344433
No 337
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.73 E-value=0.99 Score=50.49 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=24.9
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
.....+|||||+|.|.... .+.+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999875432 334445555544555555544
No 338
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.68 E-value=1.2 Score=50.05 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=23.5
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.++.++||||+|+|.... .+.+.+.+..-+....+| +..|-
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FI-L~Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFL-LATTD 158 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEE-EecCC
Confidence 468899999999876433 334444555433333333 33443
No 339
>PLN03025 replication factor C subunit; Provisional
Probab=92.67 E-value=1.2 Score=45.98 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=23.4
Q ss_pred ceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
...++||||+|.|.... ...+..++........+ +++++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~-il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRF-ALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceE-EEEeCC
Confidence 57899999999876432 33445555544444434 444443
No 340
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.67 E-value=0.032 Score=61.91 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.6
Q ss_pred ccccCCCCCCC
Q 007090 29 RLYVPPSSRYS 39 (618)
Q Consensus 29 ~~~~~~~~~~~ 39 (618)
|.|..+|+|..
T Consensus 1393 r~yEIGR~r~~ 1403 (1516)
T KOG1832|consen 1393 RMYEIGRRRPT 1403 (1516)
T ss_pred hhhhhcccCCC
Confidence 56667777765
No 341
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.62 E-value=1.9 Score=39.77 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=59.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH
Q 007090 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (618)
Q Consensus 265 vl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 344 (618)
+.+....|-|||++++-.++..+ +.|-+|+|+.=.+.- .-..+...+....++... ..|.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~--~~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIE--RFGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS--S--S--HHHHHHGGGT--EEE--E--TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEE--EcCCcccccCCC
Confidence 44556789999998776666664 447788888544430 111222332222223222 122111000000
Q ss_pred HHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhcCCCh--HHHHHHHHhcCCCccEEEEeccccHHHHHH
Q 007090 345 LKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (618)
Q Consensus 345 l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~~~~iIvDEah~~~~~~~~--~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l 420 (618)
-. .+ .......+.. ....-..+++||+||+-..++.++. ..+..++..-++..-+|+.--.+|+.+...
T Consensus 74 ~~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 00 1111122211 2223457999999999988888854 456677775444454444444556555444
No 342
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.62 E-value=0.84 Score=41.91 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=27.5
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
..+.++|||+||.|... -.+.+.+.+..-+....++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56889999999986633 3556667777665566566555543
No 343
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.60 E-value=0.88 Score=52.05 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=23.1
Q ss_pred ceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
...++||||+|++... +...++..+ ...+++++++|-++
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCC
Confidence 4568999999985422 222333333 34567777777543
No 344
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.58 E-value=1.1 Score=43.95 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=25.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~ 305 (618)
.|.-++++|++|+|||.. ++-++.+...+ .+..++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~------~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKK------QGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCceEEEe
Confidence 556789999999999974 44444444322 155678776
No 345
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.50 E-value=0.88 Score=49.45 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=12.8
Q ss_pred EEEEeCCCCcHHHH
Q 007090 265 IIGIAKTGSGKTAA 278 (618)
Q Consensus 265 vl~~~~TGsGKT~~ 278 (618)
+|++||+|+|||+.
T Consensus 39 ~Lf~GPpGtGKTTl 52 (472)
T PRK14962 39 YIFAGPRGTGKTTV 52 (472)
T ss_pred EEEECCCCCCHHHH
Confidence 69999999999975
No 346
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.47 E-value=0.46 Score=46.24 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=64.9
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc-----CceEEEEECC
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-----GIRVSAVYGG 335 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~-----~~~~~~~~gg 335 (618)
.|.-+++.|++|+|||+..+--+...+.. .+-++++++- .+-..++.+.+..+.-.. .-....+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 44678999999999997433223333321 0445777663 344455655555542100 0001111111
Q ss_pred CChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC----ChHHHHHHHHhcCCCccEEEEec
Q 007090 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----FEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 336 ~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~----~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
..... .. -..+..+...+...... .+.+++|||-...+.... +...+..++..++....+.++++
T Consensus 90 ~~~~~--------~~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIG--------WS--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccccc--------cc--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 00000 00 12334444444321111 233799999999873222 33445566666666666777777
Q ss_pred cc
Q 007090 412 TM 413 (618)
Q Consensus 412 T~ 413 (618)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 347
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.45 E-value=0.61 Score=48.00 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=24.0
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
...+.+|||||||.|.. +-...+...+..-+....+++.+
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 35788999999998764 22344444444434444444444
No 348
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.36 E-value=0.47 Score=48.77 Aligned_cols=65 Identities=29% Similarity=0.304 Sum_probs=41.1
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHH
Q 007090 238 HAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (618)
Q Consensus 238 ~~l~~~~~~~~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~L 310 (618)
..+...|. +++.|...+.. +..+++++++|+||||||.. +-.++.++...+ ...+++++-.+.++
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 34444444 55677777754 45778999999999999953 444444432211 23457777777766
No 349
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.14 E-value=1.2 Score=44.48 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=58.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|.||.|||. |++-+..++... .+..|+++..= .-..++..++-... .++....+..+.....
T Consensus 18 ~g~L~vi~a~pg~GKT~-~~l~ia~~~a~~------~~~~vly~SlE-m~~~~l~~R~la~~--s~v~~~~i~~g~l~~~ 87 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTA-FALQIALNAALN------GGYPVLYFSLE-MSEEELAARLLARL--SGVPYNKIRSGDLSDE 87 (259)
T ss_dssp TT-EEEEEESTTSSHHH-HHHHHHHHHHHT------TSSEEEEEESS-S-HHHHHHHHHHHH--HTSTHHHHHCCGCHHH
T ss_pred cCcEEEEEecccCCchH-HHHHHHHHHHHh------cCCeEEEEcCC-CCHHHHHHHHHHHh--hcchhhhhhccccCHH
Confidence 34567889999999997 445555554432 14668887652 11222222222211 1222211222322233
Q ss_pred HHHHHH------cCCcEEE-e----ChHHHHHHHHccccccCceeEEEecchhhhhcC
Q 007090 341 QFKELK------AGCEIVI-A----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (618)
Q Consensus 341 ~~~~l~------~~~dIiv-~----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~ 387 (618)
.+..+. ....+.| . |+..+...+..-......+.+||||=.|.|...
T Consensus 88 e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 88 EFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 332221 1233443 3 344555555432222267899999999987653
No 350
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.13 E-value=0.47 Score=45.61 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.++|++||+|+|||+.
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 3789999999999964
No 351
>CHL00181 cbbX CbbX; Provisional
Probab=92.09 E-value=2.1 Score=43.39 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCCcHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~ 279 (618)
+.++++.|++|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999753
No 352
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.06 E-value=1.1 Score=47.24 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=31.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|.-+++.+++|+|||+. ++-+...+.. .+.+++++.-. +...|+.....++
T Consensus 81 ~GslvLI~G~pG~GKStL-llq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTL-LLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 346789999999999974 3333333322 24568887653 3345665555444
No 353
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.05 E-value=1.1 Score=49.34 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=24.6
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
.++.++||||+|+|....+ +.+.+.+...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4688999999998764332 34555666554455455443
No 354
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.05 E-value=1.1 Score=49.02 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.0
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
.+|++||.|+|||.++
T Consensus 45 a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 45 GYLLTGIRGVGKTTSA 60 (507)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999763
No 355
>PRK06904 replicative DNA helicase; Validated
Probab=91.97 E-value=2.8 Score=45.60 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=58.7
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECC-CCh
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSK 338 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg-~~~ 338 (618)
..|.=+++.|.||+|||. |.+-+..++... .+..|+++..- .-..|+..++-... .++....+..| .-.
T Consensus 219 ~~G~LiiIaarPg~GKTa-falnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~g~~l~ 288 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTT-FAMNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASL--SRVDQTKIRTGQNLD 288 (472)
T ss_pred CCCcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHhccCCCCC
Confidence 345567889999999997 444444444321 24457776442 33445544433322 12222222223 222
Q ss_pred HHHHH-------HHHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhhcC
Q 007090 339 LDQFK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (618)
Q Consensus 339 ~~~~~-------~l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~ 387 (618)
.+.+. .+.....+.|. |+..+...+.+-......+++||||=.+.|...
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 22222 23233445552 455555444321111235789999999876533
No 356
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.95 E-value=0.54 Score=49.78 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=27.5
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 417 (618)
.....++||||+|+|.... .+.+.+.+..-++. -++++++|-+..+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEECChHHC
Confidence 3567899999999975332 34455555554334 4455555544443
No 357
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=1.1 Score=49.84 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=25.4
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
...+.++||||+|+|.... .+.+.+.+...+...-+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 3578899999999876433 334455555544444444433 543
No 358
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.89 E-value=0.13 Score=47.81 Aligned_cols=45 Identities=29% Similarity=0.325 Sum_probs=30.5
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccc--cCceeEEEecchhhhhcC
Q 007090 343 KELKAGCEIVIATPGRLIDMLKMKALT--MSRVTYLVLDEADRMFDL 387 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~--l~~~~~iIvDEah~~~~~ 387 (618)
+.....+||||+++..|.+-....... ...-.+|||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 444556999999999988754443322 234578999999987643
No 359
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.87 E-value=1.9 Score=43.05 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=24.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~ 305 (618)
.|.-+++.|++|+|||.. ++.++.+... ++.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l-~~qf~~~~a~-------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM-VEQFAVTQAS-------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEE
Confidence 456789999999999973 4444444322 255677776
No 360
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.78 E-value=0.49 Score=49.46 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
|..+.+++++++++.+.+.+ ...+.-++++||||||||+. +-.++.++.
T Consensus 111 ~~~~~~l~~l~~~~~~~~~~------------------~~~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 111 PAEPPKLSKLDLPAAIIDAI------------------APQEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred CCCCCCHHHcCCCHHHHHHH------------------hccCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 44455677777765433221 12456799999999999975 344444543
No 361
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.77 E-value=1.1 Score=47.07 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=17.4
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
..+++.||+|+|||.+ +-.++.++
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999965 33334443
No 362
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=0.41 Score=50.31 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=23.0
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
....++||||+|.|....+ +.+...+...++...+| +++|-
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fI-l~t~~ 158 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFI-LATTD 158 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEE-EEcCC
Confidence 4678999999998754322 23444444433344444 44443
No 363
>PRK09087 hypothetical protein; Validated
Probab=91.76 E-value=0.56 Score=45.73 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=25.5
Q ss_pred EEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecc-ccHH
Q 007090 375 YLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT-MPRK 416 (618)
Q Consensus 375 ~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT-~~~~ 416 (618)
+|+||++|.+. .....+..+++.+......++++++ .|+.
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 79999999753 2345677777777654444555554 4543
No 364
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.60 E-value=0.24 Score=56.01 Aligned_cols=91 Identities=22% Similarity=0.357 Sum_probs=74.8
Q ss_pred CCcccHHHHHHhcCCCCCCC-cEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 007090 452 SDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (618)
Q Consensus 452 ~~~~k~~~l~~~l~~~~~~~-~vLVF~~~~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~ 529 (618)
..+.|....++.+...+..| .+||.+|.+.....+...|+.. |.++..+|+++++.+|........+|+.+|+|.|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 45678888888888777666 7999999999988888888754 889999999999999999999999999999999954
Q ss_pred ccccCCcCCccEEE
Q 007090 530 AARGLDIKSIKSVV 543 (618)
Q Consensus 530 ~~~Gldi~~v~~VI 543 (618)
+- =.-++++..||
T Consensus 306 Al-F~Pf~~LGLII 318 (730)
T COG1198 306 AL-FLPFKNLGLII 318 (730)
T ss_pred hh-cCchhhccEEE
Confidence 32 23455666666
No 365
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.57 E-value=0.71 Score=55.61 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=71.7
Q ss_pred EEEcCCCcccHHHHHHh-cCCCCCCCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007090 447 VHVIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVY 521 (618)
Q Consensus 447 ~~~~~~~~~k~~~l~~~-l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~ 521 (618)
....+....|....+.. +.......+++|.+|+..-+..+++.|.+. ++.+..++|..+..++..++....+|..
T Consensus 625 Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~ 704 (1147)
T PRK10689 625 LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKI 704 (1147)
T ss_pred EEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 33344555666432211 111123568999999999999888887652 5678899999999999999999999999
Q ss_pred eEEEecc-cccccCCcCCccEEEE
Q 007090 522 HVLIATD-VAARGLDIKSIKSVVN 544 (618)
Q Consensus 522 ~VLVaT~-~~~~Gldi~~v~~VI~ 544 (618)
.|||+|. .+...+.+..+..||.
T Consensus 705 dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 705 DILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CEEEECHHHHhCCCCHhhCCEEEE
Confidence 9999995 4555677778888774
No 366
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.52 E-value=0.65 Score=53.77 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.+.+++.||+|+|||+. +.++...
T Consensus 487 ~~giLL~GppGtGKT~l--akalA~e 510 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL--AKAVATE 510 (733)
T ss_pred CceEEEECCCCCCHHHH--HHHHHHh
Confidence 35789999999999964 4445443
No 367
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.44 E-value=0.96 Score=49.59 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=13.1
Q ss_pred EEEEeCCCCcHHHHH
Q 007090 265 IIGIAKTGSGKTAAF 279 (618)
Q Consensus 265 vl~~~~TGsGKT~~~ 279 (618)
+|++||.|+|||++.
T Consensus 39 ~Lf~GppGtGKTTlA 53 (504)
T PRK14963 39 YLFSGPRGVGKTTTA 53 (504)
T ss_pred EEEECCCCCCHHHHH
Confidence 499999999999763
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.42 E-value=3.9 Score=42.07 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE-ccc-HHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl-~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
+.-++++||+|+|||+. +..+...+.. .+.+|+++ +.+ |..+.+ .+..+....++.+.....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt--~~kLA~~l~~------~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTT--IGKLAHKYKA------QGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHHh------cCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCCCHH
Confidence 45678899999999975 3333333322 24455554 454 333322 22333333354443332221110
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC-ChHHHHHHHHhc------CCCccEEEEecc
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQI------RPDRQTLLFSAT 412 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-~~~~i~~i~~~~------~~~~q~i~~SAT 412 (618)
....+.+.. .....+++||||=+-++.... ....+..+...+ .+..-++.++||
T Consensus 183 -----------------~~v~~~l~~--~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 183 -----------------SVAFDAIQA--AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred -----------------HHHHHHHHH--HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 011111111 013567889999887654221 223344443322 244567888998
Q ss_pred ccHHHHHHHHHHc
Q 007090 413 MPRKVEKLAREIL 425 (618)
Q Consensus 413 ~~~~~~~l~~~~~ 425 (618)
...+.-..+..|.
T Consensus 244 ~g~~~~~~a~~f~ 256 (318)
T PRK10416 244 TGQNALSQAKAFH 256 (318)
T ss_pred CChHHHHHHHHHH
Confidence 7654444455553
No 369
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=0.96 Score=50.62 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=24.0
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
.++.++||||+|+|....+. .+.+.+..-+....+ +|.+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~f-IL~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKF-VLATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEE-EEEECCch
Confidence 56889999999987644322 333444433333334 44445443
No 370
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.37 E-value=0.92 Score=45.89 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.4
Q ss_pred CCcEEEEeCCCCcHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~ 279 (618)
+.++++.||+|+|||+++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999754
No 371
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.29 E-value=0.48 Score=48.93 Aligned_cols=103 Identities=26% Similarity=0.294 Sum_probs=55.7
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
|++++.+|+|+|||+.+ |+||. ..|+...++.||.--+--.
T Consensus 385 RNilfyGPPGTGKTm~A----------------------------relAr-----------~SGlDYA~mTGGDVAPlG~ 425 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA----------------------------RELAR-----------HSGLDYAIMTGGDVAPLGA 425 (630)
T ss_pred hheeeeCCCCCCchHHH----------------------------HHHHh-----------hcCCceehhcCCCccccch
Confidence 79999999999999641 23332 2366666666664322110
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC----ChHHHHHHHHhc-----CCCccEEEEeccc
Q 007090 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----FEPQIRSIVGQI-----RPDRQTLLFSATM 413 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~----~~~~i~~i~~~~-----~~~~q~i~~SAT~ 413 (618)
. -|+-...|.++-...... =++.|||||.++..- .....+..++.+ ...+.+++.=||.
T Consensus 426 q--------aVTkiH~lFDWakkS~rG----LllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 426 Q--------AVTKIHKLFDWAKKSRRG----LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN 493 (630)
T ss_pred H--------HHHHHHHHHHHHhhcccc----eEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC
Confidence 0 022222333333222211 268999999876421 223333333332 2456788888887
Q ss_pred cHH
Q 007090 414 PRK 416 (618)
Q Consensus 414 ~~~ 416 (618)
.|.
T Consensus 494 rpg 496 (630)
T KOG0742|consen 494 RPG 496 (630)
T ss_pred Ccc
Confidence 554
No 372
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.28 E-value=1.4 Score=48.33 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=76.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh-cCce-EEEEECCCCh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIR-VSAVYGGMSK 338 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~-~~~~-~~~~~gg~~~ 338 (618)
..+-.+..-|=-.|||. +++|++..++.. -.|-++.+++.-|-.+.-+.+++..-+.. ++-+ +....
T Consensus 201 KQkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k----- 269 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK----- 269 (668)
T ss_pred hccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec-----
Confidence 44566777899999998 688888888763 24777999999998887767666543321 1111 11111
Q ss_pred HHHHHHHHcCCcEEEeChHHH-----HHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCCccEEEEecc
Q 007090 339 LDQFKELKAGCEIVIATPGRL-----IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSAT 412 (618)
Q Consensus 339 ~~~~~~l~~~~dIiv~Tp~~L-----~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT 412 (618)
+--|.+.-|+.= ....+.+...-..+.+++|||||-+. .+ .+..++..+ ..+.++|+.|.|
T Consensus 270 ---------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~-~~---a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 270 ---------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK-KD---AFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ---------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC-HH---HHHHhhhhhcccCceEEEEeCC
Confidence 122333333211 11112233344578999999999543 32 333444433 356788888877
Q ss_pred c
Q 007090 413 M 413 (618)
Q Consensus 413 ~ 413 (618)
.
T Consensus 337 N 337 (668)
T PHA03372 337 N 337 (668)
T ss_pred C
Confidence 4
No 373
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.23 E-value=1.3 Score=45.22 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=15.9
Q ss_pred HhcCC--cEEEEeCCCCcHHHH
Q 007090 259 ILSGR--DIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~--dvl~~~~TGsGKT~~ 278 (618)
+-+++ .+|+++|+|+|||..
T Consensus 157 ieq~~ipSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTL 178 (554)
T ss_pred HHcCCCCceEEecCCCCchHHH
Confidence 34443 789999999999964
No 374
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=1.5 Score=49.18 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=25.0
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
...+.++||||+|+|.... .+.+.+.+...++...+| |.+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fI-l~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFI-FATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEE-EEeCCh
Confidence 3578899999999865332 234555555543434333 444543
No 375
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.16 E-value=1.5 Score=45.51 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHhcC-----CcEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 249 TSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~-----~dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
+|+|...+..+.+. .-.++.||.|.||+..+ ..+...++.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 57777777666542 25689999999999753 333344443
No 376
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.15 E-value=0.73 Score=46.95 Aligned_cols=58 Identities=31% Similarity=0.393 Sum_probs=36.2
Q ss_pred CcHHHHHHHH-HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 248 PTSIQCQALP-IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 248 ~~~~Q~~~i~-~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
+++-|...+. ++..+++++++|+||||||.. +-.++.++... ....+++++=.+.|+.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-----CCCceEEEECCchhhc
Confidence 4455555554 455667999999999999974 33334443221 1134577777777764
No 377
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.14 E-value=1.8 Score=45.46 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=62.8
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccC---CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
-.|+.||.|+||+.. ...+..+++........ ..+..+-+|+.-..|.++ ..- .+.++..+.-.......
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~~-~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AAG-AHGGLLTLERSWNEKGK- 115 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----Hcc-CCCCeEEEecccccccc-
Confidence 478999999999975 34455566543311110 113344455543344332 111 11122222110000000
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.....|.|-..-.+...+... -......++||||+|.|-. .-.+.+.+.+...++...+|++|..+
T Consensus 116 -----~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 -----RLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred -----cccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 001234333333333333222 2245678999999998642 22345555666544455555555443
No 378
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.12 E-value=0.4 Score=50.26 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
|..+.++.++++++.+++.+. ..+..++++|+||||||+. +..++.++..
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 333446777787776544321 2345689999999999974 4555666643
No 379
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.09 E-value=1.7 Score=40.34 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=34.6
Q ss_pred CceeEEEecchhhhhcCCCh--HHHHHHHHhcCCCccEEEEec-cccHHHHHHHHH
Q 007090 371 SRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSA-TMPRKVEKLARE 423 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~--~~i~~i~~~~~~~~q~i~~SA-T~~~~~~~l~~~ 423 (618)
.++++||+||.--.+..++. ..+..++..- |..+.+++|+ ..|+.+-+++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~k-P~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKAR-PEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcC-CCCcEEEEECCCCCHHHHHHHHH
Confidence 46899999999988877744 4455666644 4445555555 467776665543
No 380
>PF05729 NACHT: NACHT domain
Probab=91.00 E-value=1.4 Score=39.92 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=16.9
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
|-+++.|++|+|||.. +..+...+.
T Consensus 1 r~l~I~G~~G~GKStl-l~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTL-LRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHH-HHHHHHHHH
Confidence 3478999999999974 333333443
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.96 E-value=4.2 Score=37.53 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=29.2
Q ss_pred CceeEEEecchhhhh-cCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHH
Q 007090 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (618)
Q Consensus 371 ~~~~~iIvDEah~~~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~ 424 (618)
...+++|+|....+. +......+..+.....+..-++.+++..+......+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 356678888887642 112233333444434455566677776555544455444
No 382
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=0.53 Score=52.36 Aligned_cols=142 Identities=17% Similarity=0.258 Sum_probs=76.1
Q ss_pred HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE-EcccHHHHHHHHHHHHHHHhhcCceEEE------
Q 007090 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKKFAKSHGIRVSA------ 331 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI-l~Ptr~La~q~~~~~~~~~~~~~~~~~~------ 331 (618)
+-.|+.+.+.||.|+|||.+ +.++.+++.- .+.++++ =+|-+++-.++.+ +.....+-.-+.
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~P------tsG~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYDP------TSGRILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcCC------CCCeEEECCeehhhcCHHHHH---HHeeeeeccceeecccHH
Confidence 44678899999999999975 6667776642 1233332 2566666555543 221111111111
Q ss_pred ---EECCCChH--------------HHHHHHHcCCcEEEeChHHHHHHHHcc-----ccccCceeEEEecchhhhhcCCC
Q 007090 332 ---VYGGMSKL--------------DQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGF 389 (618)
Q Consensus 332 ---~~gg~~~~--------------~~~~~l~~~~dIiv~Tp~~L~~~l~~~-----~~~l~~~~~iIvDEah~~~~~~~ 389 (618)
.||-.+.. +.+..+..|++=.|+.-|..+.==+++ ...+++..++|+|||-.-+|...
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 11111110 011112223333333332221111111 11256788999999999999988
Q ss_pred hHHHHHHHHhcCCCccEEEEec
Q 007090 390 EPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 390 ~~~i~~i~~~~~~~~q~i~~SA 411 (618)
+..+...+..+..++-++....
T Consensus 640 E~lVq~aL~~~~~~rTVlvIAH 661 (716)
T KOG0058|consen 640 EYLVQEALDRLMQGRTVLVIAH 661 (716)
T ss_pred HHHHHHHHHHhhcCCeEEEEeh
Confidence 9999999988877755554443
No 383
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.90 E-value=1.8 Score=48.31 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.6
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
-.|++||.|+|||.++
T Consensus 40 ayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 40 AYLFSGPRGTGKTSAA 55 (559)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999763
No 384
>PRK08506 replicative DNA helicase; Provisional
Probab=90.90 E-value=1.8 Score=47.16 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=57.3
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|.||.|||. |++-++.++..+ +..|+++.. -.-+.|+..++.... .++....+..|.-...
T Consensus 191 ~G~LivIaarpg~GKT~-fal~ia~~~~~~-------g~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~~~ 259 (472)
T PRK08506 191 KGDLIIIAARPSMGKTT-LCLNMALKALNQ-------DKGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRTGDLDDD 259 (472)
T ss_pred CCceEEEEcCCCCChHH-HHHHHHHHHHhc-------CCcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHH
Confidence 45567889999999996 455555555432 455776644 233444544433221 1332221222222222
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
.+..+ ..+..+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 260 e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 260 EWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22221 122345543 4555554443211112357899999999765
No 385
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.72 E-value=0.78 Score=53.79 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=71.4
Q ss_pred cccHHHHHHh-cCCCCCCCcEEEEcCChh----HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec-
Q 007090 454 AEKLPWLLEK-LPGMIDDGDVLVFASKKT----TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT- 527 (618)
Q Consensus 454 ~~k~~~l~~~-l~~~~~~~~vLVF~~~~~----~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT- 527 (618)
..|....++. ......+.+|.|.+||.- +...+.++++..++++..++--.+.++...+++..++|+++|+|.|
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 4455444333 333334568999999955 5555666666668889999999999999999999999999999999
Q ss_pred ccccccCCcCCccEEEE
Q 007090 528 DVAARGLDIKSIKSVVN 544 (618)
Q Consensus 528 ~~~~~Gldi~~v~~VI~ 544 (618)
..++.++-+.++-.||.
T Consensus 706 rLL~kdv~FkdLGLlII 722 (1139)
T COG1197 706 RLLSKDVKFKDLGLLII 722 (1139)
T ss_pred HhhCCCcEEecCCeEEE
Confidence 68889999999999883
No 386
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.70 E-value=0.95 Score=50.44 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.2
Q ss_pred cEEEEeCCCCcHHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFV 280 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~ 280 (618)
.+|+.++.|+|||.++.
T Consensus 40 a~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 40 AYLFSGTRGVGKTTIAR 56 (624)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 387
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.62 E-value=0.99 Score=44.61 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.1
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
+-.|+.+++.++.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34788999999999999963
No 388
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=2.4 Score=46.77 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=23.9
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
.....++||||+|+|.... .+.+...+...+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999975432 334455555544444444444
No 389
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.57 E-value=2.6 Score=45.35 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=56.0
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
..|.-+++.|++|+|||. +++-+..++.. ..+..|+++.. -.-+.|+...+... ..++....+..|....
T Consensus 192 ~~g~liviag~pg~GKT~-~al~ia~~~a~------~~g~~v~~fSl-Em~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~ 261 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTT-LALNIAENVAL------REGKPVLFFSL-EMSAEQLGERLLAS--KSGINTGNIRTGRFND 261 (421)
T ss_pred CCCceEEEEeCCCCCHHH-HHHHHHHHHHH------hCCCcEEEEEC-CCCHHHHHHHHHHH--HcCCCHHHHhcCCCCH
Confidence 345678889999999997 44544444431 12455777752 12233333332221 1233322222222222
Q ss_pred HHHHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 340 DQFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 340 ~~~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
..+..+. .+..+.|. |...+...+.+-......+++||||=.+.|.
T Consensus 262 ~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 262 SDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 2222221 23455553 3344444333211112258899999988765
No 390
>PRK13764 ATPase; Provisional
Probab=90.56 E-value=0.64 Score=51.66 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=19.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
..++++++|+||||||+. +..++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999974 34444454
No 391
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.55 E-value=2.3 Score=45.24 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=23.4
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.....++||||+|.|.... ...+...+...++.. +++|.++-
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t-~~Il~t~~ 166 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHA-IFIFATTE 166 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCe-EEEEEeCC
Confidence 4577899999999976432 223334444333333 34444443
No 392
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.55 E-value=0.53 Score=52.86 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=23.7
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
...+.++||||+|.|.... .+.+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999765322 234455555544444454444
No 393
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.52 E-value=2.1 Score=50.95 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=34.7
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
..--+||||++|.+-+......+..++...++...+|+.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 344689999999876555566788888888888999888877543
No 394
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.47 E-value=3 Score=46.89 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=23.2
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.....+|||||+|.|.... .+.+...+...+ ..-++++.++-
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp-~~tv~Il~t~~ 159 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPP-PHAIFILATTE 159 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCC-CCeEEEEEeCC
Confidence 4567899999999875422 223334444433 33344444443
No 395
>PHA00012 I assembly protein
Probab=90.42 E-value=4.2 Score=41.33 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=35.6
Q ss_pred CceeEEEecchhhhhcCC-Ch----HHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcC
Q 007090 371 SRVTYLVLDEADRMFDLG-FE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILS 426 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~-~~----~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~ 426 (618)
..-.++||||||..++.- +. ..+...+...+...-.++|-.--+..+...++..+.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~ 140 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALA 140 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhh
Confidence 456799999999887532 22 346666677776665555555555566666665443
No 396
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.14 E-value=1.4 Score=46.79 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=32.0
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
.|-.+|.+++--....+.+... .+..|.-++... +...+.+++.||+|+|||+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 4556788886655555444432 222222222222 12457899999999999974
No 397
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.07 E-value=1.1 Score=49.33 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=55.3
Q ss_pred EEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccccc-CCcCCccE
Q 007090 473 VLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAARG-LDIKSIKS 541 (618)
Q Consensus 473 vLVF~~~~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-----~~~~G-ldi~~v~~ 541 (618)
+||++||++-|..+++.+... ++.+..++|+++...+...++. | ..|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998887643 5778999999998777655444 6 99999995 45566 89999999
Q ss_pred EEE
Q 007090 542 VVN 544 (618)
Q Consensus 542 VI~ 544 (618)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 994
No 398
>PRK08840 replicative DNA helicase; Provisional
Probab=90.02 E-value=4.3 Score=44.13 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=55.4
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
..|.-+++.|.||.|||.. .+-+..++.. ..+..|+|+..= .-..|+..++-... .++....+..|.-..
T Consensus 215 ~~g~LiviaarPg~GKTaf-alnia~~~a~------~~~~~v~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~ 284 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTF-AMNLCENAAM------DQDKPVLIFSLE-MPAEQLMMRMLASL--SRVDQTKIRTGQLDD 284 (464)
T ss_pred CCCceEEEEeCCCCchHHH-HHHHHHHHHH------hCCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHHhcCCCCH
Confidence 3456678899999999974 3434344321 124456666432 22334443332221 122222222232223
Q ss_pred HHHHH-------HHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 340 DQFKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 340 ~~~~~-------l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
..+.. +.....+.|. |+..+...+++-......+++||||-.|.|.
T Consensus 285 ~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 285 EDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 33332 2223445553 3344443332211111247899999999764
No 399
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.98 E-value=2.3 Score=44.46 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=47.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHH-HH---HHHHHHHhhcCceEEEE--ECCCChH
Q 007090 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ-IY---LETKKFAKSHGIRVSAV--YGGMSKL 339 (618)
Q Consensus 266 l~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q-~~---~~~~~~~~~~~~~~~~~--~gg~~~~ 339 (618)
++.++.|+|||.+.++.++.+++..+. ...++++ ||...+.. +. ..+..+... .+..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE-
Confidence 567899999999888878888766531 2455555 65544444 22 223333332 1222211 111000
Q ss_pred HHHHHHHcCCcEEEeChHHH--HHHHHccccccCceeEEEecchhhhhc
Q 007090 340 DQFKELKAGCEIVIATPGRL--IDMLKMKALTMSRVTYLVLDEADRMFD 386 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L--~~~l~~~~~~l~~~~~iIvDEah~~~~ 386 (618)
+.+|+.|.+.+...- ..-+. -..+++||+||+-.+.+
T Consensus 73 -----~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPD 111 (384)
T ss_dssp -----ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTT
T ss_pred -----ecCceEEEEecccccccccccc-----ccccceeeeeecccCch
Confidence 134566666664321 11111 24678999999887543
No 400
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.93 E-value=0.53 Score=48.80 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=30.2
Q ss_pred HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 257 ~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
.++..+++++++|+||||||+. +-.++.++ . ...+++.+=.+.+|.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i-~-------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAI-P-------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHccc-C-------CCCCEEEECCCcccc
Confidence 3455788999999999999974 23333332 1 134567777777664
No 401
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.92 E-value=1.6 Score=50.52 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=18.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.++.+++.||+|+|||+. +-++.+.
T Consensus 211 ~~~giLL~GppGtGKT~l--araia~~ 235 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL--AKAVANE 235 (733)
T ss_pred CCceEEEECCCCCChHHH--HHHHHHH
Confidence 457899999999999964 4444443
No 402
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.88 E-value=0.46 Score=52.15 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.+|+.||.+.+..+. .|+-.|+..|||+|||+..+=.++.++
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 468899998886654 788899999999999997555555554
No 403
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=6.9 Score=42.21 Aligned_cols=137 Identities=22% Similarity=0.299 Sum_probs=73.6
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHH----HHHhc--------CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCC
Q 007090 230 CGFSTQLMHAISKQGYEKPTSIQCQAL----PIILS--------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (618)
Q Consensus 230 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i----~~i~~--------~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 297 (618)
+|.++.-+..+...|...-.+.=.+.+ ..+.+ -..+++.+|.|||||.. .+-+.. ..+
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaL--AA~iA~--------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTAL--AAKIAL--------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHH--HHHHHh--------hcC
Confidence 477777777777666544333222222 12211 13689999999999953 222222 123
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEE
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iI 377 (618)
-|.+=|+.|..-. |.+....+..+.+ .+.+. .-+..++||
T Consensus 564 FPFvKiiSpe~mi------------------------G~sEsaKc~~i~k----------~F~DA------YkS~lsiiv 603 (744)
T KOG0741|consen 564 FPFVKIISPEDMI------------------------GLSESAKCAHIKK----------IFEDA------YKSPLSIIV 603 (744)
T ss_pred CCeEEEeChHHcc------------------------CccHHHHHHHHHH----------HHHHh------hcCcceEEE
Confidence 6777788884211 1122222222211 01111 234678999
Q ss_pred ecchhhhhcCC-----ChHHHHHH----HHhcCC-CccEEEEeccccHH
Q 007090 378 LDEADRMFDLG-----FEPQIRSI----VGQIRP-DRQTLLFSATMPRK 416 (618)
Q Consensus 378 vDEah~~~~~~-----~~~~i~~i----~~~~~~-~~q~i~~SAT~~~~ 416 (618)
||+..++++|. |.+.+... ++..+| .+++++|..|-...
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 99999999874 44444432 233333 45677776665443
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.80 E-value=0.31 Score=45.58 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=30.5
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCC-ccEEEEecc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~-~q~i~~SAT 412 (618)
....++++||...-++......+...+..+... .++++.|.-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567899999999888777677777666665433 666666654
No 405
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=89.78 E-value=0.75 Score=52.89 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=56.7
Q ss_pred cHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC----C-CcEEE-EeCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 007090 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----G-FKAAA-LHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (618)
Q Consensus 456 k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~----~-~~~~~-l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~ 529 (618)
.+-.+..+.... .+.++++.+||..-+...++.|.+. + ..+.. +||.++..++..+++.|.+|..+|||+|..
T Consensus 112 Tfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 344444444332 3468999999999999998888764 2 44433 999999999999999999999999999963
No 406
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.78 E-value=2.4 Score=46.67 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=31.6
Q ss_pred CccCCccccCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQ--GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
.|-.+|+++.-...+...+... -+..+..++... ....+.+++.||+|+|||+. +.++..
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l--a~alA~ 110 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL--AKAVAG 110 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH--HHHHHH
Confidence 4556777776555544433321 011122222111 11235799999999999964 444443
No 407
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.77 E-value=3 Score=48.13 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=25.9
Q ss_pred eeEEEecchhhhhcCCC----hHHHHHHHHhcCCCccEEEEeccccHHH
Q 007090 373 VTYLVLDEADRMFDLGF----EPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (618)
Q Consensus 373 ~~~iIvDEah~~~~~~~----~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 417 (618)
-.+|+|||+|.++..+- ...+..++..+-...++.++.||-++..
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999999875442 1223333433333445666666665553
No 408
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.77 E-value=1.2 Score=49.42 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=70.5
Q ss_pred HHHHHhcCCCCCCCcEEEEcCC----hhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cccc
Q 007090 458 PWLLEKLPGMIDDGDVLVFASK----KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAAR 532 (618)
Q Consensus 458 ~~l~~~l~~~~~~~~vLVF~~~----~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~~ 532 (618)
-.++..+.....+.++.+-+|| ..++..+++.|...|+.+..+.|.+....|..++++..+|.+.|+|.|- .+..
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 3444444444345689999999 4567777778888899999999999999999999999999999999995 5558
Q ss_pred cCCcCCccEEEE
Q 007090 533 GLDIKSIKSVVN 544 (618)
Q Consensus 533 Gldi~~v~~VI~ 544 (618)
.+++.++-.||.
T Consensus 379 ~V~F~~LgLVIi 390 (677)
T COG1200 379 KVEFHNLGLVII 390 (677)
T ss_pred ceeecceeEEEE
Confidence 888888888883
No 409
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.74 E-value=1.8 Score=47.94 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=24.0
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
..++.++||||+|+|.... .+.+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999876432 234445555544444445444
No 410
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.61 E-value=4.6 Score=42.26 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (618)
.+.+.+.|+.|.|||. ++-++...+.. ..+.+ +..-+...+++..+.++. |+...-.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~-----~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~- 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI-----KRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLP- 118 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc-----ccccc----ccccHHHHHHHHHHHHHh-----------CCCccHH-
Confidence 4688999999999995 35444443221 11222 233466666666666663 1111110
Q ss_pred HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCCccEEEEeccccHH
Q 007090 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRK 416 (618)
Q Consensus 342 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~ 416 (618)
.+.+.+ .....+|+|||.|- .+.+-.-.+..++..+ ....-+|+.|.+.|..
T Consensus 119 ----------------~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 119 ----------------QVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ----------------HHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 111121 33556899999993 2222222334455444 3445566667777654
No 411
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.61 E-value=0.35 Score=52.84 Aligned_cols=49 Identities=31% Similarity=0.407 Sum_probs=36.4
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.+++++|+||||||..+++|.+... ...++|+=|--+|+.......++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 5799999999999999999987542 124788888888876555444443
No 412
>PRK04328 hypothetical protein; Provisional
Probab=89.57 E-value=2.9 Score=41.34 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=31.1
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|.-+++.|++|+|||.. ++.++...+. ++.+++++. +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l-~~~fl~~~~~-------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIF-SQQFLWNGLQ-------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 456789999999999974 3333333222 255567665 444444555555554
No 413
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.57 E-value=5.1 Score=39.09 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=30.3
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|.-+++.|++|+|||... ..++..... ++.+++++.-- +-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~-~~~~~~~~~-------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLS-QQFVYGALK-------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHH-HHHHHHHHh-------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 3467889999999999743 333222222 25667766543 3334555555554
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.42 E-value=1.1 Score=46.62 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=25.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~L 310 (618)
.+..++++||||||||+. +-.++.++... .+.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 356789999999999975 33344443211 13445655544443
No 415
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=2 Score=44.43 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.6
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+.+|+.||+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6899999999999964
No 416
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.35 E-value=0.74 Score=47.08 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..++++||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999964
No 417
>PRK08006 replicative DNA helicase; Provisional
Probab=89.33 E-value=5.9 Score=43.13 Aligned_cols=115 Identities=15% Similarity=0.125 Sum_probs=57.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|.+|.|||. |.+-+..++... .+..|+|+..= .-..|+..++-... .++....+..|.-..+
T Consensus 223 ~G~LiiIaarPgmGKTa-falnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 223 PSDLIIVAARPSMGKTT-FAMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTGQLDDE 292 (471)
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcCCCCHH
Confidence 44567889999999996 444444444311 14456666432 23334443333221 2332222222322233
Q ss_pred HHHH-------HHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 341 QFKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 341 ~~~~-------l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
.+.. +.....+.|. |+..+....++-......+++||||=.|.|.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 3322 2233455553 4445544443211112357899999999764
No 418
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=89.31 E-value=0.83 Score=42.67 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=28.0
Q ss_pred HHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH
Q 007090 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (618)
Q Consensus 256 i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~ 314 (618)
..++-.++++++.|++|+|||..+ ..+..++... +..|+++ ++.+|...+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeEe-ecCceeccc
Confidence 344557789999999999999753 3334444432 5556654 445565543
No 419
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.24 E-value=4.9 Score=37.71 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=23.9
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 412 (618)
.....+|||||+|+|.... ...+...+...++ .-+++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~-~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPP-NTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCC-CeEEEEEEC
Confidence 4567899999999975432 3344455555333 334444444
No 420
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.16 E-value=0.27 Score=52.19 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=38.7
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEE
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~ 333 (618)
+++++|+||||||.++++|.+... ...++|+=|--++........++ .|.+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~----~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRA----LGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHH----cCCeEEEEc
Confidence 478999999999999888876542 23478888888887655444333 355555544
No 421
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.14 E-value=0.65 Score=51.49 Aligned_cols=16 Identities=31% Similarity=0.227 Sum_probs=13.7
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
-+|++||.|+|||..+
T Consensus 40 A~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 40 AYIFSGPRGIGKTSIA 55 (605)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999753
No 422
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.98 E-value=0.78 Score=51.48 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=33.7
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
+++-.++|+|||..-+|...+..+...+..+..++.+++.+.-+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 45568999999999888888888888887666666566655544
No 423
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.96 E-value=1.8 Score=44.38 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=28.1
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
.|+-+.+.+|+|+|||.. +++++...... +.+++++-.-..+.
T Consensus 54 ~G~iteI~G~~GsGKTtL-aL~~~~~~~~~-------g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTL-ALHAIAEAQKA-------GGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHc-------CCcEEEEcccchhH
Confidence 456788999999999974 45555555432 55577765443333
No 424
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.96 E-value=2.3 Score=47.72 Aligned_cols=16 Identities=38% Similarity=0.277 Sum_probs=13.8
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
..|++||.|+|||.++
T Consensus 40 a~Lf~Gp~GvGKttlA 55 (620)
T PRK14954 40 GYIFSGLRGVGKTTAA 55 (620)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999764
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.94 E-value=1.2 Score=41.81 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHH-hcCCcEEEEeCCCCcHHHH
Q 007090 247 KPTSIQCQALPII-LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 247 ~~~~~Q~~~i~~i-~~~~dvl~~~~TGsGKT~~ 278 (618)
.+++-|...+... ..+..++++++||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3556677777554 4678899999999999975
No 426
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=88.89 E-value=0.97 Score=51.70 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
.|++-|++++... ...+++.|..|||||.+.. .-+.|+....... ...+|.++=|+-.|.++.+++.+++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt-~Ria~li~~~~v~---p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLT-ERIAYLIAAGGVD---PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHH-HHHHHHHHcCCcC---hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998666 6688999999999998643 3345555443222 22388999999999999999999886
No 427
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.89 E-value=2 Score=39.79 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=34.4
Q ss_pred cCceeEEEecchhhhhcCCC--hHHHHHHHHhcCCCccEEEEeccccHHHHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l 420 (618)
-..+++||+||+-..++.++ ...+..++..-++..-+|+.--.+|+.+..+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 35789999999998888874 4556677776555545554445566665444
No 428
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.77 E-value=3.8 Score=44.25 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=56.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|++|+|||. |++-++.++... .+..|+++..- .-..|+...+..... ++....+..|.-...
T Consensus 194 ~G~l~vi~g~pg~GKT~-~~l~~a~~~a~~------~g~~vl~~SlE-m~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~ 263 (434)
T TIGR00665 194 PSDLIILAARPSMGKTA-FALNIAENAAIK------EGKPVAFFSLE-MSAEQLAMRMLSSES--RVDSQKLRTGKLSDE 263 (434)
T ss_pred CCeEEEEEeCCCCChHH-HHHHHHHHHHHh------CCCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHhccCCCCHH
Confidence 45567889999999996 455555554321 24557766442 233344444333221 332222222222222
Q ss_pred HHH-------HHHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 341 QFK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 341 ~~~-------~l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
++. .+. +..+.|. |+..+...+..-.. -..+++||||=.+.|.
T Consensus 264 ~~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 264 DWEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 222 222 2345442 44455544432111 1247899999998764
No 429
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.73 E-value=3.4 Score=42.56 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=25.3
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
.....++|||+||.|... -.+.+.+++..-++...+|+.|
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 356789999999997633 2455666666644444444443
No 430
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.67 E-value=1.8 Score=45.96 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 36799999999999975
No 431
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.65 E-value=6.1 Score=46.11 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.9
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+..+++.||+|+|||..
T Consensus 346 ~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSL 363 (775)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 345699999999999964
No 432
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.56 E-value=2.4 Score=43.80 Aligned_cols=31 Identities=26% Similarity=0.151 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHhc--CC---cEEEEeCCCCcHHHHH
Q 007090 249 TSIQCQALPIILS--GR---DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 249 ~~~Q~~~i~~i~~--~~---dvl~~~~TGsGKT~~~ 279 (618)
+|+|+..|..+.+ ++ -+++.||.|+|||..+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la 38 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA 38 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH
Confidence 5777777777663 22 4789999999999753
No 433
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.56 E-value=0.66 Score=44.89 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=28.6
Q ss_pred ChHHHHHHHHccccccCceeEEEecchhhhh-cC----CChHHHHHHHHhcC-CCccEEEEeccc
Q 007090 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DL----GFEPQIRSIVGQIR-PDRQTLLFSATM 413 (618)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~-~~----~~~~~i~~i~~~~~-~~~q~i~~SAT~ 413 (618)
+...+...+..... + -+|||||+|.+. .. .+...+..++.... .....++++++.
T Consensus 105 ~l~~~~~~l~~~~~---~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGK---K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHC---C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCC---c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 34445555543222 1 689999999988 22 23344455555422 233455566665
No 434
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.46 E-value=1.5 Score=45.32 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 258 ~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
++..+++++++|+||||||.. +-.++.++ . ...+++.+=-+.|+.
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~i-p-------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREI-P-------AIERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhC-C-------CCCeEEEecCCCccc
Confidence 345778999999999999974 33344433 1 134566665555554
No 435
>PRK07004 replicative DNA helicase; Provisional
Probab=88.45 E-value=2.8 Score=45.56 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=55.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|.+|+|||. |++-+..++.. ..+..|+++.. -.-..|+..++-.. ..++....+..|.-...
T Consensus 212 ~g~liviaarpg~GKT~-~al~ia~~~a~------~~~~~v~~fSl-EM~~~ql~~R~la~--~~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKTA-FSMNIGEYVAV------EYGLPVAVFSM-EMPGTQLAMRMLGS--VGRLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCccH-HHHHHHHHHHH------HcCCeEEEEeC-CCCHHHHHHHHHHh--hcCCCHHHHhcCCCCHH
Confidence 45667889999999996 44444444431 12445666643 22233333333211 11222221212222223
Q ss_pred HHHHH------HcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 341 ~~~~l------~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
.+..+ ..+..+.|. |+..+.....+-......+++||||=.+.|.
T Consensus 282 e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 282 DWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 33221 123556653 4444544333211112357899999999875
No 436
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.44 E-value=1.8 Score=47.30 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=62.7
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccccc------C-CcCCccE
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARG------L-DIKSIKS 541 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~~G------l-di~~v~~ 541 (618)
.+.+||.+|+++-+......|...|+.+..++++.+..++..++.....|..+||++|. .+... + ....+..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 67899999999999989999999999999999999999999999999999999999995 33222 2 4556777
Q ss_pred EEE
Q 007090 542 VVN 544 (618)
Q Consensus 542 VI~ 544 (618)
||.
T Consensus 131 iVi 133 (470)
T TIGR00614 131 IAV 133 (470)
T ss_pred EEE
Confidence 764
No 437
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.33 E-value=1.5 Score=41.60 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=28.3
Q ss_pred ceeEEEecchhhhhcCCCh-----HHHHHHHHhcCCCccEEEEeccccHHHHHHHHHH
Q 007090 372 RVTYLVLDEADRMFDLGFE-----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~-----~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~ 424 (618)
.-.+|||||||.++..... +.+...+...|....-++++.--+..+...++..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~l 136 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDL 136 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHH
Confidence 4568999999987765422 2333556666665555555555555555555543
No 438
>COG1485 Predicted ATPase [General function prediction only]
Probab=88.31 E-value=8.6 Score=39.47 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=62.0
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
+.+-+.|+-|.||| +++-++.+.+... .+ .-++.-.-+..+++++..+. |....
T Consensus 66 ~GlYl~GgVGrGKT--~LMD~Fy~~lp~~-----~k----~R~HFh~FM~~vH~~l~~l~-----------g~~dp---- 119 (367)
T COG1485 66 RGLYLWGGVGRGKT--MLMDLFYESLPGE-----RK----RRLHFHRFMARVHQRLHTLQ-----------GQTDP---- 119 (367)
T ss_pred ceEEEECCCCccHH--HHHHHHHhhCCcc-----cc----ccccHHHHHHHHHHHHHHHc-----------CCCCc----
Confidence 67899999999999 4566666654321 01 22566677777777777774 11111
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCCccEEEEeccccHHH
Q 007090 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKV 417 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~ 417 (618)
+ ..+... ......+++|||.|- .+.+-.-.+..+++.+ .....++..|.|.|.++
T Consensus 120 ---------l----~~iA~~------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 120 ---------L----PPIADE------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ---------c----HHHHHH------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 0 001111 133567899999983 2221111222333332 45677888889988653
No 439
>PRK05973 replicative DNA helicase; Provisional
Probab=88.27 E-value=0.88 Score=44.48 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.++|... ...-+..|.-+++.|++|+|||+. .+-++..... +|.+++++.-- +-..|+.+.+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~-------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLL-GLELAVEAMK-------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 4555332 334455667889999999999974 4444444332 25567777532 3345666666555
No 440
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.26 E-value=0.5 Score=52.77 Aligned_cols=57 Identities=25% Similarity=0.167 Sum_probs=42.2
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEE
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~ 333 (618)
++++++||||||||..+++|.+... +.-++|+=|--++........++. |.+|.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 5799999999999999999988764 233788888888886665444443 66665544
No 441
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.16 E-value=0.46 Score=46.38 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.0
Q ss_pred EEEEeCCCCcHHHH
Q 007090 265 IIGIAKTGSGKTAA 278 (618)
Q Consensus 265 vl~~~~TGsGKT~~ 278 (618)
+++.|..|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 442
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.10 E-value=3.9 Score=46.15 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.4
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+|+.|+.|+|||..
T Consensus 40 a~Lf~Gp~G~GKttl 54 (620)
T PRK14948 40 AYLFTGPRGTGKTSS 54 (620)
T ss_pred eEEEECCCCCChHHH
Confidence 569999999999975
No 443
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.00 E-value=6.9 Score=45.31 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.5
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.++|+.||+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999975
No 444
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=0.49 Score=47.42 Aligned_cols=28 Identities=39% Similarity=0.538 Sum_probs=20.9
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
++..++++.+|||||||+. .-.|..+++
T Consensus 95 L~KSNILLiGPTGsGKTlL--AqTLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLL--AQTLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHH--HHHHHHHhC
Confidence 3456899999999999964 445666654
No 445
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.96 E-value=1.4 Score=44.13 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhc--CCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 250 SIQCQALPIILS--GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 250 ~~Q~~~i~~i~~--~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+-|.+.+..++. +.-++++++||||||.. +..++.++
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 345555544432 34588999999999974 33444554
No 446
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.80 E-value=3.6 Score=42.13 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=23.8
Q ss_pred ceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
...+|||||+|.+.... ...+..++....+...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45799999999875322 334556666555555555544
No 447
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.80 E-value=11 Score=43.04 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=26.3
Q ss_pred HcCCcEEEeChHHHHHHHHccc--cccCceeEEEecchhhh
Q 007090 346 KAGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRM 384 (618)
Q Consensus 346 ~~~~dIiv~Tp~~L~~~l~~~~--~~l~~~~~iIvDEah~~ 384 (618)
...+|||+|-|..|++-.-+.. ++|. =.+|||||||.|
T Consensus 220 ~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVIfDEAHNi 259 (945)
T KOG1132|consen 220 KEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVIFDEAHNI 259 (945)
T ss_pred cccCcEEEechhhhcCHhhhcccccccc-ccEEEEeccccH
Confidence 3347888888888887665543 4443 367888888876
No 448
>PF12846 AAA_10: AAA-like domain
Probab=87.76 E-value=1.6 Score=44.08 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=30.2
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~ 312 (618)
+++++++|+||+|||.... .++.+++.. ++.++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 3689999999999997544 555555443 677888877654443
No 449
>PRK09165 replicative DNA helicase; Provisional
Probab=87.70 E-value=3.4 Score=45.38 Aligned_cols=120 Identities=16% Similarity=0.087 Sum_probs=59.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCcc--------ccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEE
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL--------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~--------~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 332 (618)
.|.-+++.|+||+|||.. .+-++.++...... ....+..|+|+.. -.-..|+...+..... ++....+
T Consensus 216 ~g~livIaarpg~GKT~~-al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s--~v~~~~i 291 (497)
T PRK09165 216 PSDLIILAGRPSMGKTAL-ATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS--EISSSKI 291 (497)
T ss_pred CCceEEEEeCCCCChHHH-HHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHH
Confidence 345678899999999974 44444444321100 0112566777744 2334455544433321 3322222
Q ss_pred ECCCChHHHHHHHHc------CCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 333 YGGMSKLDQFKELKA------GCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 333 ~gg~~~~~~~~~l~~------~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
..|.-....+..+.. ...+.|. |+..+...+.+-.. -..+++||||=.|.|.
T Consensus 292 ~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 292 RRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 223323333322221 2345543 44555544432111 2357899999999765
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.57 E-value=4.1 Score=36.43 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=27.8
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 412 (618)
..+..++|+||.-.-++......+..++..+. . +++++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 45678999999998777766677777777662 3 4555443
No 451
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.51 E-value=2.1 Score=43.87 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=26.1
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 412 (618)
...+.++|||+||+|... -.+.+.+.+..-++...+|+.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456889999999997633 245566666664444444444433
No 452
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.49 E-value=3.5 Score=42.71 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=26.3
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
.....++|||+||+|-.. -.+.+.+.+..= |..-++++.+.-+
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEP-p~~t~fiL~t~~~ 148 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEP-PENTWFFLACREP 148 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCC-CCCeEEEEEECCh
Confidence 457889999999997633 245556666653 3443444444433
No 453
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.16 E-value=2.2 Score=47.41 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=23.7
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
.....++||||+|.|.... .+.+...+... +..-+++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEep-p~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEP-PPYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccC-CCCEEEEEecCCh
Confidence 4577899999999875332 22333444432 2333444444533
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.16 E-value=0.98 Score=48.40 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 249 TSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
.+.|.+.+..+++. .=+|+.||||||||++ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 57777777666644 3467799999999975 5556666543
No 455
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=86.99 E-value=0.49 Score=57.51 Aligned_cols=93 Identities=24% Similarity=0.318 Sum_probs=74.6
Q ss_pred EEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCCCH-----------HHHHHHHHHHhcCCceEEEecccccccCCcCCcc
Q 007090 473 VLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQ-----------ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (618)
Q Consensus 473 vLVF~~~~~~~~~l~~~L~~~-~~~~~~l~g~~~~-----------~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~ 540 (618)
-++|++....+..+...++.. ...+..+.|.+.+ ..+.+++..|....+++|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 488998888887777777654 2233335553322 2366888889999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhcccCC
Q 007090 541 SVVNFDIARDMDMHVHRIGRTGRAG 565 (618)
Q Consensus 541 ~VI~~~~p~~~~~y~Qr~GR~gR~g 565 (618)
.|+.++.|.....|+|..||+-+++
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997765
No 456
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.78 E-value=1 Score=49.54 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=25.7
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
...+.++||||||+|.... .+.+...+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999875332 334556666555555555544
No 457
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=4.8 Score=44.51 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=35.2
Q ss_pred CCCccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 220 VPRPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 220 ~p~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
++.|-.+|+++|=-+.+.+.|+.. ....|-.+.+-. +..-+.||+.+|+|+|||++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHH
Confidence 456678899998666666655421 222222222222 22347899999999999975
No 458
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=86.69 E-value=1.3 Score=47.47 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=54.8
Q ss_pred EEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----cc----CCcCCc
Q 007090 473 VLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG----LDIKSI 539 (618)
Q Consensus 473 vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~G----ldi~~v 539 (618)
.|||.||++-+..+.+.|... ++.+..|.|+|....+.+++.+ ...|+|||. .+. .+ =++..+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 799999999999999999754 8999999999999999999876 667999995 222 11 246677
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
+++|.
T Consensus 342 kcLVl 346 (731)
T KOG0347|consen 342 KCLVL 346 (731)
T ss_pred eEEEE
Confidence 77774
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.64 E-value=2.5 Score=44.49 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.7
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
-.|+.+++.+++|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3778899999999999974
No 460
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.55 E-value=0.55 Score=52.21 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHHHHhc--------CC--cEEEEeCCCCcH--HHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHH
Q 007090 246 EKPTSIQCQALPIILS--------GR--DIIGIAKTGSGK--TAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~--------~~--dvl~~~~TGsGK--T~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q 313 (618)
..+...|.+++-...+ |. ..|+....|.|| |.+ .+..=+|+ +...++|++.-...|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvA-giIfeNyL--------kGRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVA-GIIFENYL--------KGRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeE-EEEehhhh--------cccceeEEEEeccccccc
Confidence 4577788888765442 21 345555555555 543 22223443 235679999888888776
Q ss_pred HHHHHHHHHhhcCceEEEEECC----CChHHHHHHHHcCCcEEEeChHHHHHHHHccc-c-----------ccCc-eeEE
Q 007090 314 IYLETKKFAKSHGIRVSAVYGG----MSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-L-----------TMSR-VTYL 376 (618)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~gg----~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-~-----------~l~~-~~~i 376 (618)
-.+.+..... .++.|..+.-. .+..+. ... .-.||+|||-.|+-.-.... . .-.. =.+|
T Consensus 334 AERDL~DigA-~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcCC-CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 6666655532 34444332111 000000 001 13699999988875432110 0 0011 2589
Q ss_pred Eecchhhhhc---------CCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 377 VLDEADRMFD---------LGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 377 IvDEah~~~~---------~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
||||||+-.+ ...+..+..+-+.+ |+.+++.-|||-
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATG 454 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATG 454 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccC
Confidence 9999997654 12556677777766 456689999984
No 461
>CHL00176 ftsH cell division protein; Validated
Probab=86.41 E-value=3.6 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.2
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
.+.+++.||+|+|||+. +-++..
T Consensus 216 p~gVLL~GPpGTGKT~L--AralA~ 238 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLL--AKAIAG 238 (638)
T ss_pred CceEEEECCCCCCHHHH--HHHHHH
Confidence 35799999999999964 444433
No 462
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.39 E-value=3.4 Score=46.21 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.8
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+-+++|||.|.|||+.
T Consensus 327 KilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTL 342 (877)
T ss_pred ceEEeecCCCCChhHH
Confidence 5689999999999964
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.22 E-value=6.5 Score=38.05 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=31.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|.-+++.+++|+|||.. ++.++...+. ++.+++++.-. +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~-~~~~~~~~~~-------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTF-SLQFLYQGLK-------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 356788999999999974 3333333222 25567776553 4455666666554
No 464
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.19 E-value=5.7 Score=43.03 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=13.3
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+|++||.|+|||.+
T Consensus 41 a~Lf~Gp~G~GKtt~ 55 (451)
T PRK06305 41 AYLFSGIRGTGKTTL 55 (451)
T ss_pred EEEEEcCCCCCHHHH
Confidence 478999999999975
No 465
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.09 E-value=1.8 Score=49.06 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=23.8
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEecccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 414 (618)
.....++||||||.|.... ...+...+...++.. ++++.+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~t-ifILaTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHV-IFILATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCce-EEEEEcCCh
Confidence 3577899999999865322 223444444433333 344444533
No 466
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.06 E-value=1.8 Score=44.75 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.4
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..+++.||+|+|||..
T Consensus 52 ~~~ll~GppG~GKT~l 67 (328)
T PRK00080 52 DHVLLYGPPGLGKTTL 67 (328)
T ss_pred CcEEEECCCCccHHHH
Confidence 5799999999999975
No 467
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.95 E-value=7.6 Score=45.79 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.5
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.++++.||+|+|||..
T Consensus 195 ~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAI 210 (852)
T ss_pred CceEEEcCCCCCHHHH
Confidence 5899999999999975
No 468
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.93 E-value=2.1 Score=42.41 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=19.0
Q ss_pred ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
-|+-|..++. ++..-+++.|||.|++.
T Consensus 90 K~gDlaaiLt----~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAILT----NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHHh----cCCcCCeEEEehhhhcC
Confidence 3445555554 46667899999999964
No 469
>PRK10436 hypothetical protein; Provisional
Probab=85.89 E-value=1.9 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=19.2
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.+.-++++||||||||++ +..++.++
T Consensus 217 ~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred cCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 445688999999999975 34556665
No 470
>PRK07413 hypothetical protein; Validated
Probab=85.85 E-value=4 Score=42.64 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=36.1
Q ss_pred cCceeEEEecchhhhhcCCChH--HHHHHHHhcCCCccEEEEecc--ccHHHHHHHH
Q 007090 370 MSRVTYLVLDEADRMFDLGFEP--QIRSIVGQIRPDRQTLLFSAT--MPRKVEKLAR 422 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~--~i~~i~~~~~~~~q~i~~SAT--~~~~~~~l~~ 422 (618)
-..+++||+||+-..++.++.+ .+..++... |...-+++|+. .|+.+-.++.
T Consensus 303 ~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~r-p~~~evVLTGR~~ap~~lie~AD 358 (382)
T PRK07413 303 SGLYKTIILDELNPTVDLELLPVEPIVQTLLRK-PRDTEVIITGRCKNQPAYFDLAS 358 (382)
T ss_pred CCCCCEEEEechHHHHHCCCccHHHHHHHHHhC-CCCCEEEEeCCCCCCHHHHHhCc
Confidence 3568999999999988888553 566777654 55556666766 5666655543
No 471
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=85.76 E-value=5.3 Score=39.99 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred HHHHhcC---CcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 256 LPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 256 i~~i~~~---~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
++.+... +++++.+++|+|||+. +-++..+
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl--~~~l~~~ 134 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTL--LRDLARI 134 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHH--HHHHhCc
Confidence 4444433 5789999999999964 4444433
No 472
>PRK05636 replicative DNA helicase; Provisional
Probab=85.58 E-value=5.9 Score=43.51 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=52.6
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc---ccHHHHHHHHHHHHHHHhhcCceEEEEECCCCh
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA---PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~---Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 338 (618)
|.-+++.|.||+|||.. .+-+..++... .+..++++. +..+++..+ -. ...++....+..|.-.
T Consensus 265 G~Liiiaarpg~GKT~~-al~~a~~~a~~------~g~~v~~fSlEMs~~ql~~R~----ls--~~s~v~~~~i~~g~l~ 331 (505)
T PRK05636 265 GQMIIVAARPGVGKSTL-ALDFMRSASIK------HNKASVIFSLEMSKSEIVMRL----LS--AEAEVRLSDMRGGKMD 331 (505)
T ss_pred CceEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCeEEEEEeeCCHHHHHHHH----HH--HhcCCCHHHHhcCCCC
Confidence 34568899999999974 34444443211 244566662 333344333 21 1122222222233333
Q ss_pred HHHHHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 339 LDQFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 339 ~~~~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
.+.+..+. ....+.|. |...+...+++-.. -..+++||||=.|.|.
T Consensus 332 ~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 332 EDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 33332221 22445553 33344333322111 1357899999999875
No 473
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=85.54 E-value=20 Score=33.75 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=51.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccc-----c-cccCCcCCc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV-----A-ARGLDIKSI 539 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~-----~-~~Gldi~~v 539 (618)
..++||.+|+..-+...+..+... ++.+..++|+.+..+....+. +...|+|+|.- + ..-.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 457999999999888877766543 678899999988766544332 66789999941 2 223567778
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
..+|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 88774
No 474
>PRK06620 hypothetical protein; Validated
Probab=85.46 E-value=4.9 Score=38.75 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=58.0
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcC-ceEEEEECC--CChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHG-IRVSAVYGG--MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~-~~~~~~~gg--~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
--+|+.+....|..+...+..-..... .+..+++|. ..++.....+.......+.+...... ......+++
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~~~~~d~l 89 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EILEKYNAF 89 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hHHhcCCEE
Confidence 347888877777766665543111001 144677774 44555555554444545544332211 123456789
Q ss_pred EecchhhhhcCCChHHHHHHHHhcCCCccEEEEecc-ccHH
Q 007090 377 VLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT-MPRK 416 (618)
Q Consensus 377 IvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT-~~~~ 416 (618)
+|||+|.+. ...+..+++.+......+++|++ .|+.
T Consensus 90 liDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 90 IIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred EEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 999999642 23556666666544444555555 5543
No 475
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.40 E-value=1.1 Score=49.77 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=31.0
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
+++-.++|+||+-.-+|...+..+...+....+++-+|+.|.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 556789999999987877777778777777666665555553
No 476
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.35 E-value=1.5 Score=47.83 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcC-C-cEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 250 SIQCQALPIILSG-R-DIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 250 ~~Q~~~i~~i~~~-~-dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+-|.+.+..+... + -++++||||||||+. +..++.++
T Consensus 228 ~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 228 PELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 3455555444433 3 468999999999975 33344444
No 477
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.31 E-value=3.6 Score=44.58 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=32.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|.-+++.+++|+|||+. ++.++..+.. ++.++|++..- +...|+...+.++
T Consensus 93 ~GsvilI~G~pGsGKTTL-~lq~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTL-LLQVACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 456789999999999974 3334344332 24568887653 4455666555544
No 478
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.21 E-value=8.8 Score=42.06 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=35.3
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
.|.-+++.+++|+|||+. ++.++..... ++.+++++. .-+-..|+...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l-~~~f~~~~~~-------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLL-VSKFLENACA-------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHH-------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 446789999999999974 3333333322 366788776 456677887777666
No 479
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.18 E-value=5.6 Score=46.72 Aligned_cols=16 Identities=44% Similarity=0.518 Sum_probs=14.6
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.++++.||+|+|||..
T Consensus 201 ~n~lL~G~pGvGKTal 216 (821)
T CHL00095 201 NNPILIGEPGVGKTAI 216 (821)
T ss_pred CCeEEECCCCCCHHHH
Confidence 5899999999999975
No 480
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=84.95 E-value=7 Score=40.12 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=61.0
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCc--------cccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECC
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPE--------LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~--------~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg 335 (618)
-.++.||.|+||+.. ...+...++.... ....+.|-++++-|+...-.+.. -.......+.
T Consensus 28 a~Lf~G~~G~Gk~~~-A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~--~~~~~~~~~~-------- 96 (314)
T PRK07399 28 AYLFAGPEGVGRKLA-ALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLI--TASEAEEAGL-------- 96 (314)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccccc--chhhhhhccc--------
Confidence 679999999999974 3444555554320 12334566666666421100000 0000000000
Q ss_pred CChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 336 ~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
. -+....|-|-....+...+..... .....++|||+||.|-.. -.+.+.+++..-+ ...+|++|.
T Consensus 97 -~-------~~~~~~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 97 -K-------RKAPPQIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred -c-------ccccccCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 0 000122333333344444433332 357889999999987533 2445666666644 444444443
No 481
>PRK08760 replicative DNA helicase; Provisional
Probab=84.93 E-value=5 Score=43.78 Aligned_cols=113 Identities=19% Similarity=0.129 Sum_probs=56.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|.+|+|||. |++-+..++... .+..|+++.. -.-..|+..++..... ++....+..|.....
T Consensus 228 ~G~LivIaarPg~GKTa-fal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~ 297 (476)
T PRK08760 228 PTDLIILAARPAMGKTT-FALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNG--RINAQRLRTGALEDE 297 (476)
T ss_pred CCceEEEEeCCCCChhH-HHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhC--CCcHHHHhcCCCCHH
Confidence 44567889999999997 445554444321 2445676644 2233455544433321 222111222222222
Q ss_pred HHH-------HHHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 341 QFK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 341 ~~~-------~l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
.+. .+. ...+.|. |+..+...+.+-. .-..+++||||=.+.|.
T Consensus 298 e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 298 DWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 222 222 2445544 4455544443211 12357899999999764
No 482
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.92 E-value=7.2 Score=45.93 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.++++.||+|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999965
No 483
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.79 E-value=9.6 Score=44.85 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=16.8
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
.++++.||+|+|||.. +-.+..
T Consensus 209 ~n~lLvG~pGvGKTal--~~~La~ 230 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV--VEGLAL 230 (852)
T ss_pred CceeEECCCCCCHHHH--HHHHHH
Confidence 5899999999999965 344443
No 484
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.70 E-value=1.4 Score=41.84 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=16.2
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
-++++||||||||+. +..++.++
T Consensus 3 lilI~GptGSGKTTl-l~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTT-LAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 368899999999975 33344444
No 485
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.64 E-value=1.9 Score=39.21 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=29.0
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
....++|+||...-++......+..++..+....++++++.--
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999998777766777777777664433445554433
No 486
>PRK05595 replicative DNA helicase; Provisional
Probab=84.56 E-value=3.2 Score=44.90 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=55.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|.||+|||. +.+-+..++.. ..|.+|+++..- .-..|+..++.... .++....+..|.-...
T Consensus 200 ~g~liviaarpg~GKT~-~al~ia~~~a~------~~g~~vl~fSlE-ms~~~l~~R~~a~~--~~v~~~~~~~~~l~~~ 269 (444)
T PRK05595 200 KGDMILIAARPSMGKTT-FALNIAEYAAL------REGKSVAIFSLE-MSKEQLAYKLLCSE--ANVDMLRLRTGNLEDK 269 (444)
T ss_pred CCcEEEEEecCCCChHH-HHHHHHHHHHH------HcCCcEEEEecC-CCHHHHHHHHHHHh--cCCCHHHHhcCCCCHH
Confidence 34556789999999996 44555444321 125567777542 23334443333222 1232222222222222
Q ss_pred HHHHHHc------CCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhhc
Q 007090 341 QFKELKA------GCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (618)
Q Consensus 341 ~~~~l~~------~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~ 386 (618)
.+..+.. ...+.|. |+..+...+.+-.. -..+++||||=.|.|..
T Consensus 270 e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 270 DWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 3322221 2344443 33444433322111 13588999999998753
No 487
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.48 E-value=1.4 Score=43.02 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=24.7
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt 307 (618)
.++++|++|||||. +++-+|.++... -..+++++|.
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~~-------f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRHK-------FDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhccc-------CCEEEEEecC
Confidence 78999999999996 455555554221 2456677773
No 488
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.46 E-value=1.4 Score=33.11 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.6
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
+...++.+++|+|||.. +-++..++
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 34689999999999965 55555543
No 489
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=13 Score=41.79 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=30.6
Q ss_pred EEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC
Q 007090 352 VIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (618)
Q Consensus 352 iv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~ 401 (618)
|=+-||+++..++.-... --++.|||+|.+..-..+..--.++..+.
T Consensus 488 VGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred eccCChHHHHHHHhhCCC---CceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 446799999999754432 23799999999873334444445555443
No 490
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=84.43 E-value=2.5 Score=39.38 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=29.6
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc-cEEEEeccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR-QTLLFSATM 413 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~-q~i~~SAT~ 413 (618)
+.+.+++++||--.-++......+..++..+.... .+++++.--
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 44678999999998777776777777776654332 455554443
No 491
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.43 E-value=6.1 Score=44.53 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.9
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+-+++.||+|+|||.+
T Consensus 111 ~illL~GP~GsGKTTl 126 (637)
T TIGR00602 111 RILLITGPSGCGKSTT 126 (637)
T ss_pred cEEEEECCCCCCHHHH
Confidence 4589999999999975
No 492
>PRK14701 reverse gyrase; Provisional
Probab=84.43 E-value=3.8 Score=51.21 Aligned_cols=59 Identities=12% Similarity=0.290 Sum_probs=52.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~ 528 (618)
..++||.+|++.-+..+++.|+.. ++.+..+||+++..++..+++.+.+|..+|||+|.
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TP 186 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTA 186 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECC
Confidence 448999999999999999988763 46778999999999999999999999999999995
No 493
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.35 E-value=2.3 Score=42.43 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 253 CQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 253 ~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
+.++.++..++.+++.|++|+|||..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHH
Confidence 34456677899999999999999975
No 494
>PF14516 AAA_35: AAA-like domain
Probab=84.33 E-value=12 Score=38.66 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhc-CCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 250 SIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 250 ~~Q~~~i~~i~~-~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
|+.+.++..+.+ |.-+.+.+|=.+|||.. +..++.++.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~ 56 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQ 56 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHH
Confidence 589999999887 99999999999999974 444555553
No 495
>PRK06321 replicative DNA helicase; Provisional
Probab=84.24 E-value=12 Score=40.86 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=55.9
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 341 (618)
|.=+++.|.+|+|||. |.+-+..++... .+..|+++.. -.-..|+..++... ..++....+..+.-....
T Consensus 226 G~LiiiaarPgmGKTa-fal~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e 295 (472)
T PRK06321 226 SNLMILAARPAMGKTA-LALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICS--RSEVESKKISVGDLSGRD 295 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHh--hcCCCHHHhhcCCCCHHH
Confidence 4456889999999996 455555554321 1444666643 22333444433221 123322222223222233
Q ss_pred HH-------HHHcCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 342 FK-------ELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 342 ~~-------~l~~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
+. .+. ...+.|. |...+...+++-. .-..+++||||=.+.|.
T Consensus 296 ~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 296 FQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcC
Confidence 32 222 2456554 4445544443211 12357899999999875
No 496
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=84.04 E-value=1.1 Score=50.60 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=38.1
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEE
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 332 (618)
++++++|+||||||..+++|.+... ...++|+=|--++........++ .|.+|.++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~----~G~~V~~F 195 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKA----SGDAVFKF 195 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHh----CCCEEEEe
Confidence 4899999999999999999987653 12367777777776544333332 35555443
No 497
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=83.88 E-value=2.1 Score=47.95 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=34.1
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
.-+++.|..|+|||.+ +-.+...+ .++|+.||+..|+++...+.
T Consensus 72 s~~~itG~AGsGKst~--i~~l~~~l-----------~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTS--IQTLNENL-----------DCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHH--HHHHHHhc-----------CEEEEcchHHHHHhhhcccc
Confidence 5689999999999965 55555532 48999999999998876444
No 498
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=83.88 E-value=8.3 Score=42.78 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=34.9
Q ss_pred ccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHH
Q 007090 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (618)
Q Consensus 369 ~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~ 424 (618)
-+.+.+++|+|||-.-++.+....+..++..--|+. .+.|-.-.+.+..+....
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~--tvISV~Hr~tl~~~h~~~ 583 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA--TVISVGHRPTLWNFHSRQ 583 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCC--EEEEeccchhhHHHHhhh
Confidence 367889999999998888877777776665533344 444444444455555543
No 499
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=83.88 E-value=1.3 Score=45.85 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=14.0
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+-+++.+|.|+|||+.
T Consensus 149 lgllL~GPPGcGKTll 164 (413)
T PLN00020 149 LILGIWGGKGQGKSFQ 164 (413)
T ss_pred eEEEeeCCCCCCHHHH
Confidence 5688999999999975
No 500
>PRK09354 recA recombinase A; Provisional
Probab=83.75 E-value=4.8 Score=41.75 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|+-+.+.+|+|+|||. ++++++...... +.+++++-.-..+-...+..+ |...
T Consensus 59 ~G~IteI~G~~GsGKTt-Lal~~~~~~~~~-------G~~~~yId~E~s~~~~~a~~l----------------Gvdl-- 112 (349)
T PRK09354 59 RGRIVEIYGPESSGKTT-LALHAIAEAQKA-------GGTAAFIDAEHALDPVYAKKL----------------GVDI-- 112 (349)
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHHHc-------CCcEEEECCccchHHHHHHHc----------------CCCH--
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHcccccc--CceeEEEecchhhhhc-----------------CCChHHHHHHHHhcC
Q 007090 341 QFKELKAGCEIVIATPGRLIDMLKMKALTM--SRVTYLVLDEADRMFD-----------------LGFEPQIRSIVGQIR 401 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l--~~~~~iIvDEah~~~~-----------------~~~~~~i~~i~~~~~ 401 (618)
.++++..|......+..-...+ ..+++||||=+-.+.. .-....+..+...++
T Consensus 113 --------d~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~ 184 (349)
T PRK09354 113 --------DNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIS 184 (349)
T ss_pred --------HHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHH
Q ss_pred CCccEEEEe
Q 007090 402 PDRQTLLFS 410 (618)
Q Consensus 402 ~~~q~i~~S 410 (618)
...-+++|+
T Consensus 185 k~~itvI~t 193 (349)
T PRK09354 185 KSNTTVIFI 193 (349)
T ss_pred HcCcEEEEE
Done!