Query 007090
Match_columns 618
No_of_seqs 434 out of 3077
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.1E-66 3.7E-71 560.6 46.8 391 210-604 41-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1E-59 3.6E-64 504.3 47.9 394 213-608 3-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1E-56 3.5E-61 480.2 38.6 373 220-599 32-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 7.7E-56 2.6E-60 473.7 35.6 379 219-604 34-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.4E-53 4.9E-58 454.2 40.2 371 222-601 18-388 (400)
6 1xti_A Probable ATP-dependent 100.0 4E-53 1.4E-57 449.1 38.7 368 225-600 8-380 (391)
7 1fuu_A Yeast initiation factor 100.0 1.1E-54 3.8E-59 461.5 24.8 376 220-603 16-391 (394)
8 1hv8_A Putative ATP-dependent 100.0 6.6E-52 2.2E-56 435.5 44.0 358 224-596 5-363 (367)
9 3pey_A ATP-dependent RNA helic 100.0 3.3E-52 1.1E-56 442.2 40.7 359 222-591 2-370 (395)
10 3fht_A ATP-dependent RNA helic 100.0 2.2E-52 7.4E-57 446.6 38.5 369 221-599 21-401 (412)
11 3sqw_A ATP-dependent RNA helic 100.0 2.9E-52 9.8E-57 464.8 40.3 366 223-590 15-410 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 1.3E-51 4.4E-56 458.8 41.3 358 232-591 79-462 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 1.8E-53 6.3E-58 464.3 21.3 367 223-599 90-468 (479)
14 2z0m_A 337AA long hypothetical 100.0 6.3E-50 2.2E-54 415.5 40.3 335 232-591 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.3E-48 4.4E-53 432.4 36.9 348 223-587 17-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 2.5E-50 8.6E-55 441.5 17.3 372 219-601 113-494 (508)
17 3oiy_A Reverse gyrase helicase 100.0 1.4E-47 4.8E-52 410.0 29.3 327 236-591 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 8.7E-47 3E-51 413.6 36.2 342 224-588 1-353 (523)
19 1tf5_A Preprotein translocase 100.0 6.5E-46 2.2E-50 410.8 24.5 377 181-580 21-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 2.5E-45 8.7E-50 430.6 28.5 331 226-578 163-597 (1108)
21 2va8_A SSO2462, SKI2-type heli 100.0 3.7E-44 1.3E-48 409.3 35.2 336 224-580 7-410 (715)
22 4a2p_A RIG-I, retinoic acid in 100.0 1.3E-44 4.3E-49 401.8 29.8 330 245-580 5-510 (556)
23 2zj8_A DNA helicase, putative 100.0 1.8E-44 6.1E-49 411.9 28.2 334 226-579 2-388 (720)
24 3tbk_A RIG-I helicase domain; 100.0 5.9E-44 2E-48 396.1 26.9 334 246-586 3-515 (555)
25 2p6r_A Afuhel308 helicase; pro 100.0 1.8E-44 6.2E-49 410.7 23.1 334 226-580 2-390 (702)
26 2ykg_A Probable ATP-dependent 100.0 1.4E-44 4.7E-49 412.4 20.9 343 238-586 4-524 (696)
27 4a2q_A RIG-I, retinoic acid in 100.0 2.9E-43 1E-47 405.8 30.5 332 243-580 244-751 (797)
28 4ddu_A Reverse gyrase; topoiso 100.0 1.1E-42 3.8E-47 408.1 29.2 322 243-592 75-504 (1104)
29 1wp9_A ATP-dependent RNA helic 100.0 4E-42 1.4E-46 374.2 31.6 323 247-580 9-477 (494)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 2.9E-43 1E-47 413.3 22.3 320 242-592 53-468 (1054)
31 2fsf_A Preprotein translocase 100.0 8.7E-43 3E-47 384.7 24.3 364 195-581 26-586 (853)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-42 8.9E-47 402.1 27.9 332 243-580 244-751 (936)
33 2xgj_A ATP-dependent RNA helic 100.0 3.7E-41 1.3E-45 392.0 36.3 320 244-586 84-508 (1010)
34 1nkt_A Preprotein translocase 100.0 5E-41 1.7E-45 370.9 31.8 336 243-594 108-637 (922)
35 4gl2_A Interferon-induced heli 100.0 4.8E-42 1.6E-46 391.6 19.2 325 246-577 6-517 (699)
36 3fe2_A Probable ATP-dependent 100.0 1.4E-39 4.7E-44 321.9 30.1 239 198-436 2-240 (242)
37 4a4z_A Antiviral helicase SKI2 100.0 5.2E-40 1.8E-44 382.5 29.4 317 247-585 39-501 (997)
38 1gm5_A RECG; helicase, replica 100.0 2E-40 6.7E-45 374.5 21.5 321 235-581 357-700 (780)
39 2eyq_A TRCF, transcription-rep 100.0 7.2E-39 2.5E-43 378.2 35.7 324 230-579 586-923 (1151)
40 4f92_B U5 small nuclear ribonu 100.0 6.4E-39 2.2E-43 388.7 32.7 344 232-586 911-1316(1724)
41 2whx_A Serine protease/ntpase/ 100.0 5.9E-41 2E-45 372.2 10.3 324 231-600 156-503 (618)
42 2oca_A DAR protein, ATP-depend 100.0 5E-40 1.7E-44 361.1 15.0 311 246-576 112-453 (510)
43 4f92_B U5 small nuclear ribonu 100.0 3E-38 1E-42 382.8 30.1 338 244-586 76-481 (1724)
44 2jlq_A Serine protease subunit 100.0 6.3E-40 2.1E-44 353.4 11.9 312 244-601 1-337 (451)
45 2xau_A PRE-mRNA-splicing facto 100.0 2.4E-38 8.1E-43 359.9 22.3 338 221-580 68-445 (773)
46 1yks_A Genome polyprotein [con 100.0 1.8E-39 6.2E-44 348.2 7.9 288 258-600 4-324 (440)
47 2fwr_A DNA repair protein RAD2 100.0 1E-37 3.5E-42 339.3 18.2 295 246-578 92-454 (472)
48 3o8b_A HCV NS3 protease/helica 100.0 3E-38 1E-42 347.2 11.6 278 248-582 218-518 (666)
49 1wrb_A DJVLGB; RNA helicase, D 100.0 3.1E-36 1E-40 299.9 23.5 236 211-446 7-252 (253)
50 2wv9_A Flavivirin protease NS2 100.0 7E-38 2.4E-42 349.7 11.7 307 247-598 215-556 (673)
51 2z83_A Helicase/nucleoside tri 100.0 2.4E-37 8.2E-42 333.8 12.9 272 256-578 15-313 (459)
52 3iuy_A Probable ATP-dependent 100.0 1.3E-35 4.5E-40 290.5 24.1 216 217-433 11-228 (228)
53 2v6i_A RNA helicase; membrane, 100.0 1.2E-35 4.2E-40 317.9 22.1 270 261-575 1-288 (431)
54 3ber_A Probable ATP-dependent 100.0 1.8E-34 6E-39 286.2 26.3 209 221-434 39-248 (249)
55 3h1t_A Type I site-specific re 100.0 1.4E-35 4.9E-40 331.2 18.9 304 246-565 177-544 (590)
56 3bor_A Human initiation factor 100.0 1.2E-34 4E-39 285.5 22.7 213 217-434 22-235 (237)
57 3dkp_A Probable ATP-dependent 100.0 1.3E-34 4.4E-39 286.8 22.3 230 203-436 3-243 (245)
58 2pl3_A Probable ATP-dependent 100.0 6.3E-34 2.1E-38 280.2 26.8 228 201-435 6-234 (236)
59 2oxc_A Probable ATP-dependent 100.0 5.1E-34 1.8E-38 279.6 23.6 211 217-433 16-228 (230)
60 1z63_A Helicase of the SNF2/RA 100.0 5.8E-34 2E-38 312.0 26.5 312 246-578 36-453 (500)
61 1q0u_A Bstdead; DEAD protein, 100.0 2.4E-34 8E-39 279.9 20.5 208 223-435 2-213 (219)
62 1qde_A EIF4A, translation init 100.0 7.7E-34 2.6E-38 277.2 23.7 211 219-435 8-218 (224)
63 3fmo_B ATP-dependent RNA helic 100.0 4.8E-34 1.6E-38 290.6 23.2 214 213-434 77-298 (300)
64 1vec_A ATP-dependent RNA helic 100.0 1.4E-33 4.9E-38 271.5 25.2 202 225-431 3-205 (206)
65 3dmq_A RNA polymerase-associat 100.0 2.2E-34 7.5E-39 335.8 21.8 334 246-592 152-627 (968)
66 3mwy_W Chromo domain-containin 100.0 1.5E-33 5.1E-38 324.1 28.4 386 184-588 176-696 (800)
67 2gxq_A Heat resistant RNA depe 100.0 2.7E-33 9.2E-38 269.7 25.6 204 226-433 2-205 (207)
68 3rc3_A ATP-dependent RNA helic 100.0 4E-34 1.4E-38 318.4 22.4 284 256-585 149-451 (677)
69 3jux_A Protein translocase sub 100.0 1E-32 3.4E-37 298.4 30.4 330 246-593 74-606 (822)
70 3ly5_A ATP-dependent RNA helic 100.0 7.9E-33 2.7E-37 276.4 25.2 204 225-429 52-258 (262)
71 1z3i_X Similar to RAD54-like; 100.0 1.3E-31 4.5E-36 300.5 36.4 338 246-595 54-547 (644)
72 1t6n_A Probable ATP-dependent 100.0 8.1E-33 2.8E-37 269.2 22.0 208 220-432 9-219 (220)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.4E-31 3.2E-35 302.9 21.5 313 246-577 270-708 (1038)
74 2ipc_A Preprotein translocase 100.0 4.2E-28 1.4E-32 266.9 30.8 318 243-580 76-700 (997)
75 2p6n_A ATP-dependent RNA helic 100.0 1.3E-28 4.5E-33 233.1 18.3 181 422-606 9-190 (191)
76 1c4o_A DNA nucleotide excision 100.0 4.6E-27 1.6E-31 263.4 25.3 176 402-588 379-560 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.3E-27 1.1E-31 222.5 18.2 168 438-607 15-182 (185)
78 2d7d_A Uvrabc system protein B 99.9 9E-26 3.1E-30 252.8 26.1 174 402-586 385-564 (661)
79 2rb4_A ATP-dependent RNA helic 99.9 2.9E-25 1E-29 207.6 17.4 155 439-595 4-164 (175)
80 2hjv_A ATP-dependent RNA helic 99.9 5E-25 1.7E-29 203.4 18.1 151 438-591 5-155 (163)
81 1fuk_A Eukaryotic initiation f 99.9 6.7E-26 2.3E-30 209.8 10.4 158 442-601 3-160 (165)
82 1t5i_A C_terminal domain of A 99.9 5E-25 1.7E-29 205.2 15.8 158 441-601 4-162 (172)
83 3eaq_A Heat resistant RNA depe 99.9 5.5E-24 1.9E-28 205.1 16.7 141 452-594 14-154 (212)
84 3i32_A Heat resistant RNA depe 99.9 3.3E-23 1.1E-27 209.1 15.9 148 443-593 3-150 (300)
85 3b6e_A Interferon-induced heli 99.9 2.3E-23 7.8E-28 201.3 12.2 166 244-412 30-216 (216)
86 2vl7_A XPD; helicase, unknown 99.9 4.5E-22 1.6E-26 218.5 21.7 299 244-574 5-518 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 1.3E-24 4.4E-29 202.1 0.0 150 442-593 3-152 (170)
88 3llm_A ATP-dependent RNA helic 99.9 1.5E-21 5.1E-26 191.4 14.6 172 244-429 58-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 8.3E-20 2.8E-24 201.3 27.7 307 247-574 3-528 (551)
90 1rif_A DAR protein, DNA helica 99.9 9.7E-22 3.3E-26 198.3 11.0 155 246-417 112-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 1.8E-18 6.1E-23 192.1 21.7 313 247-574 3-581 (620)
92 2fz4_A DNA repair protein RAD2 99.8 2.1E-18 7E-23 169.0 13.3 139 246-416 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-18 4.3E-23 173.5 10.9 127 452-578 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 5E-09 1.7E-13 116.2 9.2 144 249-411 151-297 (608)
95 3hgt_A HDA1 complex subunit 3; 98.3 1.7E-06 5.9E-11 86.3 9.3 122 453-579 107-238 (328)
96 4b3f_X DNA-binding protein smu 98.3 1.9E-06 6.4E-11 96.5 10.1 68 246-321 188-256 (646)
97 2gk6_A Regulator of nonsense t 98.2 1.1E-05 3.9E-10 89.6 15.5 70 245-321 178-247 (624)
98 2xzl_A ATP-dependent helicase 98.1 1.5E-05 5.3E-10 90.6 13.8 70 245-321 358-427 (802)
99 3e1s_A Exodeoxyribonuclease V, 98.1 1.4E-05 4.7E-10 87.7 12.2 121 246-409 188-312 (574)
100 2wjy_A Regulator of nonsense t 98.1 2.4E-05 8.3E-10 88.9 14.4 70 245-321 354-423 (800)
101 3upu_A ATP-dependent DNA helic 98.0 1.6E-05 5.6E-10 85.0 11.1 69 243-318 21-94 (459)
102 3lfu_A DNA helicase II; SF1 he 98.0 0.00013 4.5E-09 81.5 18.2 72 246-323 8-79 (647)
103 2o0j_A Terminase, DNA packagin 97.4 0.0012 4E-08 68.2 13.1 72 247-324 163-234 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.013 4.4E-07 64.5 16.2 74 246-325 162-235 (592)
105 2orw_A Thymidine kinase; TMTK, 96.7 0.0079 2.7E-07 55.4 10.2 40 261-308 2-41 (184)
106 1xx6_A Thymidine kinase; NESG, 96.5 0.0049 1.7E-07 57.1 7.5 39 262-308 8-46 (191)
107 3ec2_A DNA replication protein 96.5 0.0063 2.2E-07 55.6 8.0 30 249-278 16-54 (180)
108 3vkw_A Replicase large subunit 96.5 0.0055 1.9E-07 64.0 8.1 106 263-410 162-267 (446)
109 2j9r_A Thymidine kinase; TK1, 96.2 0.0047 1.6E-07 57.9 5.3 40 262-309 28-67 (214)
110 2kjq_A DNAA-related protein; s 96.0 0.0024 8.4E-08 56.6 2.3 41 371-412 82-123 (149)
111 2b8t_A Thymidine kinase; deoxy 96.0 0.0083 2.8E-07 57.0 6.0 91 261-384 11-101 (223)
112 2orv_A Thymidine kinase; TP4A 95.8 0.0093 3.2E-07 56.5 5.4 40 261-308 18-57 (234)
113 1l8q_A Chromosomal replication 95.8 0.028 9.5E-07 56.6 9.4 17 262-278 37-53 (324)
114 3kl4_A SRP54, signal recogniti 95.6 0.036 1.2E-06 57.9 9.5 132 263-425 98-235 (433)
115 1pjr_A PCRA; DNA repair, DNA r 95.6 0.027 9.4E-07 63.5 9.3 72 246-323 10-81 (724)
116 1d2n_A N-ethylmaleimide-sensit 95.6 0.14 4.9E-06 49.8 13.4 16 263-278 65-80 (272)
117 2w58_A DNAI, primosome compone 95.5 0.061 2.1E-06 49.8 10.1 16 263-278 55-70 (202)
118 1uaa_A REP helicase, protein ( 95.3 0.016 5.5E-07 64.8 6.1 71 247-323 2-72 (673)
119 3te6_A Regulatory protein SIR3 95.3 0.067 2.3E-06 53.5 9.8 18 261-278 44-61 (318)
120 2p65_A Hypothetical protein PF 95.2 0.17 5.9E-06 45.5 11.8 17 262-278 43-59 (187)
121 3e2i_A Thymidine kinase; Zn-bi 95.1 0.028 9.7E-07 52.5 5.9 41 261-309 27-67 (219)
122 2zpa_A Uncharacterized protein 95.1 0.044 1.5E-06 60.2 8.4 112 247-413 175-288 (671)
123 3u4q_A ATP-dependent helicase/ 95.1 0.042 1.4E-06 65.8 9.0 74 246-323 9-82 (1232)
124 2v1u_A Cell division control p 94.8 0.058 2E-06 55.4 8.2 18 261-278 43-60 (387)
125 1jbk_A CLPB protein; beta barr 94.6 0.27 9.1E-06 44.4 11.3 17 262-278 43-59 (195)
126 1w4r_A Thymidine kinase; type 94.6 0.053 1.8E-06 49.9 6.2 39 261-307 19-57 (195)
127 2z4s_A Chromosomal replication 94.5 0.12 4E-06 54.5 9.8 41 372-412 194-236 (440)
128 3eie_A Vacuolar protein sortin 94.5 0.21 7.3E-06 50.0 11.4 50 223-278 13-67 (322)
129 3dm5_A SRP54, signal recogniti 94.4 0.18 6E-06 52.8 10.7 57 263-330 101-159 (443)
130 1g5t_A COB(I)alamin adenosyltr 94.4 0.34 1.2E-05 44.5 11.3 139 262-420 28-170 (196)
131 3h4m_A Proteasome-activating n 94.2 0.14 4.9E-06 50.1 9.2 54 222-278 11-67 (285)
132 3cf0_A Transitional endoplasmi 94.1 0.32 1.1E-05 48.2 11.4 60 223-287 10-72 (301)
133 3bos_A Putative DNA replicatio 94.1 0.04 1.4E-06 52.4 4.6 18 261-278 51-68 (242)
134 2chg_A Replication factor C sm 94.0 0.25 8.6E-06 45.8 10.0 40 371-411 101-140 (226)
135 1a5t_A Delta prime, HOLB; zinc 93.9 0.17 5.8E-06 51.1 9.2 39 249-288 4-49 (334)
136 2qby_B CDC6 homolog 3, cell di 93.8 0.29 1E-05 50.1 11.0 17 262-278 45-61 (384)
137 2qgz_A Helicase loader, putati 93.6 0.27 9.1E-06 49.0 9.9 17 262-278 152-168 (308)
138 3syl_A Protein CBBX; photosynt 93.6 0.072 2.5E-06 53.0 5.6 16 263-278 68-83 (309)
139 1gm5_A RECG; helicase, replica 93.4 0.12 4.1E-06 58.4 7.6 75 470-544 417-496 (780)
140 3u61_B DNA polymerase accessor 93.2 0.12 4E-06 51.9 6.6 41 371-411 104-144 (324)
141 1fnn_A CDC6P, cell division co 93.2 0.19 6.6E-06 51.5 8.4 15 264-278 46-60 (389)
142 2qby_A CDC6 homolog 1, cell di 93.1 0.3 1E-05 49.8 9.7 17 262-278 45-61 (386)
143 1xwi_A SKD1 protein; VPS4B, AA 92.7 0.87 3E-05 45.6 12.1 46 223-278 7-61 (322)
144 4b4t_J 26S protease regulatory 92.6 0.21 7.2E-06 51.4 7.3 54 222-278 142-198 (405)
145 1sxj_E Activator 1 40 kDa subu 92.4 0.27 9.1E-06 49.8 8.0 43 370-413 132-174 (354)
146 4b4t_K 26S protease regulatory 92.2 0.21 7.1E-06 52.1 6.8 54 222-278 166-222 (428)
147 3oiy_A Reverse gyrase helicase 92.2 0.31 1.1E-05 50.6 8.3 77 469-545 63-146 (414)
148 4b4t_H 26S protease regulatory 92.0 0.18 6.2E-06 52.8 6.1 54 222-278 203-259 (467)
149 2qp9_X Vacuolar protein sortin 91.8 0.26 8.9E-06 50.2 7.0 17 262-278 84-100 (355)
150 3pfi_A Holliday junction ATP-d 91.8 0.54 1.8E-05 47.2 9.3 16 263-278 56-71 (338)
151 1njg_A DNA polymerase III subu 91.7 3.1 0.00011 38.6 14.2 15 264-278 47-61 (250)
152 2dr3_A UPF0273 protein PH0284; 91.3 1.3 4.3E-05 41.9 11.0 50 261-319 22-71 (247)
153 1iqp_A RFCS; clamp loader, ext 91.1 1.2 4.1E-05 44.1 11.1 39 371-410 109-147 (327)
154 2r6a_A DNAB helicase, replicat 90.8 1.1 3.6E-05 47.3 10.7 116 261-387 202-328 (454)
155 2qz4_A Paraplegin; AAA+, SPG7, 90.6 1.3 4.5E-05 42.3 10.5 17 262-278 39-55 (262)
156 2q6t_A DNAB replication FORK h 90.5 0.86 2.9E-05 47.9 9.7 115 261-386 199-324 (444)
157 1sxj_D Activator 1 41 kDa subu 90.4 0.46 1.6E-05 47.9 7.2 40 371-411 132-171 (353)
158 3vfd_A Spastin; ATPase, microt 90.2 0.77 2.6E-05 47.3 8.9 17 262-278 148-164 (389)
159 2p6n_A ATP-dependent RNA helic 90.1 2.5 8.4E-05 38.6 11.3 71 298-378 54-128 (191)
160 3hu3_A Transitional endoplasmi 90.1 0.76 2.6E-05 48.9 8.8 43 373-415 298-350 (489)
161 1t6n_A Probable ATP-dependent 89.9 2.2 7.7E-05 39.5 11.2 71 471-544 83-164 (220)
162 4a1f_A DNAB helicase, replicat 89.9 0.51 1.7E-05 47.5 6.8 114 261-385 45-169 (338)
163 3e70_C DPA, signal recognition 89.6 1.5 5E-05 44.0 10.0 136 261-425 128-265 (328)
164 4ddu_A Reverse gyrase; topoiso 89.3 0.62 2.1E-05 54.8 8.0 78 469-546 120-204 (1104)
165 3pvs_A Replication-associated 89.1 0.5 1.7E-05 49.7 6.4 23 263-287 51-73 (447)
166 2eyq_A TRCF, transcription-rep 88.6 0.89 3E-05 53.8 8.7 98 447-544 628-731 (1151)
167 1n0w_A DNA repair protein RAD5 88.6 2.4 8.3E-05 39.8 10.5 18 261-278 23-40 (243)
168 2w0m_A SSO2452; RECA, SSPF, un 88.5 1.1 3.6E-05 42.0 7.8 18 261-278 22-39 (235)
169 2oxc_A Probable ATP-dependent 88.2 3.3 0.00011 38.7 11.1 71 469-544 91-172 (230)
170 1w5s_A Origin recognition comp 88.1 1.3 4.4E-05 45.6 8.8 16 263-278 51-68 (412)
171 2ehv_A Hypothetical protein PH 88.1 0.54 1.9E-05 44.7 5.5 43 371-413 134-181 (251)
172 1jr3_A DNA polymerase III subu 87.8 2.6 9E-05 42.5 10.8 15 264-278 40-54 (373)
173 1sxj_C Activator 1 40 kDa subu 87.7 1.8 6.3E-05 43.4 9.4 39 371-410 109-147 (340)
174 2fna_A Conserved hypothetical 87.5 18 0.00061 35.7 16.8 54 355-413 123-179 (357)
175 2gno_A DNA polymerase III, gam 87.5 2.8 9.7E-05 41.4 10.4 40 370-410 80-119 (305)
176 1ls1_A Signal recognition part 87.4 3.7 0.00013 40.3 11.2 53 371-423 179-232 (295)
177 3ber_A Probable ATP-dependent 87.2 2.5 8.5E-05 40.3 9.6 71 470-544 111-192 (249)
178 1sxj_A Activator 1 95 kDa subu 87.1 0.89 3.1E-05 48.8 7.0 41 371-413 147-189 (516)
179 3cf2_A TER ATPase, transitiona 87.0 0.66 2.3E-05 52.3 6.0 61 221-286 470-533 (806)
180 2l82_A Designed protein OR32; 86.9 8.7 0.0003 30.7 10.6 116 473-594 5-129 (162)
181 3hjh_A Transcription-repair-co 86.8 1.8 6.1E-05 45.8 8.9 52 261-323 13-64 (483)
182 1vma_A Cell division protein F 86.5 10 0.00035 37.4 13.8 17 262-278 104-120 (306)
183 2hjv_A ATP-dependent RNA helic 86.5 2.3 7.7E-05 37.5 8.3 73 298-380 35-111 (163)
184 1ixz_A ATP-dependent metallopr 86.3 1.7 5.8E-05 41.5 7.9 23 263-287 50-72 (254)
185 1xti_A Probable ATP-dependent 85.6 4.4 0.00015 41.0 11.2 73 469-544 75-158 (391)
186 1sxj_B Activator 1 37 kDa subu 85.6 1.8 6.1E-05 42.7 7.9 38 372-410 107-144 (323)
187 1qvr_A CLPB protein; coiled co 84.7 2.2 7.4E-05 48.9 9.0 16 263-278 192-207 (854)
188 2zts_A Putative uncharacterize 84.6 1.1 3.8E-05 42.4 5.6 23 261-284 29-51 (251)
189 1hqc_A RUVB; extended AAA-ATPa 84.5 0.73 2.5E-05 45.8 4.4 17 262-278 38-54 (324)
190 3bh0_A DNAB-like replicative h 84.5 1.8 6E-05 43.1 7.2 50 261-319 67-116 (315)
191 2yhs_A FTSY, cell division pro 84.3 2.7 9.3E-05 44.4 8.7 38 262-307 293-331 (503)
192 1oyw_A RECQ helicase, ATP-depe 84.2 1.7 5.8E-05 46.7 7.4 75 470-544 65-145 (523)
193 2v1x_A ATP-dependent DNA helic 83.7 3.5 0.00012 44.9 9.7 77 449-528 65-144 (591)
194 2rb4_A ATP-dependent RNA helic 83.6 4.6 0.00016 35.9 9.0 71 298-378 34-108 (175)
195 3co5_A Putative two-component 83.6 0.88 3E-05 39.3 4.0 22 257-278 22-43 (143)
196 1fuk_A Eukaryotic initiation f 83.4 3.5 0.00012 36.3 8.0 73 298-380 30-106 (165)
197 2ce7_A Cell division protein F 83.3 0.94 3.2E-05 47.9 4.8 16 263-278 50-65 (476)
198 3m6a_A ATP-dependent protease 83.3 1.3 4.3E-05 47.9 5.9 26 261-288 107-132 (543)
199 3fe2_A Probable ATP-dependent 83.0 4.7 0.00016 38.0 9.3 71 470-544 102-182 (242)
200 3eaq_A Heat resistant RNA depe 83.0 4.5 0.00015 37.4 8.9 71 298-378 31-105 (212)
201 4b4t_M 26S protease regulatory 82.9 0.97 3.3E-05 47.1 4.6 55 221-278 174-231 (434)
202 1nlf_A Regulatory protein REPA 82.7 5.2 0.00018 38.7 9.7 20 259-278 27-46 (279)
203 1vec_A ATP-dependent RNA helic 82.7 7.4 0.00025 35.3 10.3 71 470-544 71-152 (206)
204 3bor_A Human initiation factor 82.2 4.7 0.00016 37.9 8.9 73 469-544 97-179 (237)
205 3n70_A Transport activator; si 81.8 1 3.5E-05 38.9 3.7 20 259-278 21-40 (145)
206 2z43_A DNA repair and recombin 80.0 11 0.00037 37.4 11.1 18 261-278 106-123 (324)
207 2ffh_A Protein (FFH); SRP54, s 79.3 11 0.00039 38.9 11.2 17 262-278 98-114 (425)
208 1ypw_A Transitional endoplasmi 79.2 5.5 0.00019 45.1 9.5 24 261-286 237-260 (806)
209 2jgn_A DBX, DDX3, ATP-dependen 78.8 3.2 0.00011 37.6 6.1 71 298-378 46-120 (185)
210 3cf2_A TER ATPase, transitiona 78.4 2.2 7.6E-05 48.0 5.8 16 263-278 239-254 (806)
211 2pl3_A Probable ATP-dependent 78.2 5 0.00017 37.5 7.6 70 470-544 97-177 (236)
212 2i4i_A ATP-dependent RNA helic 78.2 8.7 0.0003 39.2 10.1 72 297-378 275-350 (417)
213 1t5i_A C_terminal domain of A 78.1 5.5 0.00019 35.4 7.5 73 298-380 31-107 (172)
214 2l8b_A Protein TRAI, DNA helic 77.7 2.1 7.2E-05 38.6 4.3 120 249-412 36-158 (189)
215 2gxq_A Heat resistant RNA depe 77.7 11 0.00038 34.1 9.7 71 470-544 72-150 (207)
216 3cmu_A Protein RECA, recombina 77.5 1.9 6.5E-05 53.3 5.2 44 256-307 1415-1464(2050)
217 1e9r_A Conjugal transfer prote 77.3 2.1 7.2E-05 44.6 5.1 44 261-312 52-95 (437)
218 1pzn_A RAD51, DNA repair and r 77.2 8 0.00028 38.9 9.2 18 261-278 130-147 (349)
219 1qde_A EIF4A, translation init 77.2 8.8 0.0003 35.4 8.9 91 449-544 57-161 (224)
220 2eyu_A Twitching motility prot 76.6 1.8 6.3E-05 41.7 4.0 20 259-278 22-41 (261)
221 1r6b_X CLPA protein; AAA+, N-t 76.6 5.2 0.00018 45.0 8.3 18 261-278 206-223 (758)
222 3iuy_A Probable ATP-dependent 76.2 6.6 0.00023 36.4 7.8 71 470-544 94-173 (228)
223 3jvv_A Twitching mobility prot 75.3 3 0.0001 42.2 5.4 18 261-278 122-139 (356)
224 1q0u_A Bstdead; DEAD protein, 75.2 3.9 0.00013 37.8 5.8 71 470-544 72-156 (219)
225 1p9r_A General secretion pathw 75.1 4.5 0.00015 41.9 6.7 18 261-278 166-183 (418)
226 3i5x_A ATP-dependent RNA helic 74.9 29 0.001 37.0 13.6 77 297-380 338-418 (563)
227 2i1q_A DNA repair and recombin 74.8 10 0.00034 37.5 9.1 18 261-278 97-114 (322)
228 3lda_A DNA repair protein RAD5 74.7 16 0.00054 37.5 10.7 18 261-278 177-194 (400)
229 2oap_1 GSPE-2, type II secreti 73.5 4.3 0.00015 43.3 6.2 31 248-278 245-276 (511)
230 1wrb_A DJVLGB; RNA helicase, D 73.3 10 0.00035 35.8 8.4 71 470-544 100-180 (253)
231 4b4t_L 26S protease subunit RP 73.3 2.2 7.6E-05 44.4 3.8 54 222-278 175-231 (437)
232 1gku_B Reverse gyrase, TOP-RG; 72.8 4.3 0.00015 47.5 6.5 73 470-544 99-181 (1054)
233 1wp9_A ATP-dependent RNA helic 72.3 9 0.00031 39.7 8.5 71 469-544 51-131 (494)
234 3gk5_A Uncharacterized rhodane 72.1 4.7 0.00016 32.7 4.9 46 460-505 45-90 (108)
235 3ly5_A ATP-dependent RNA helic 71.7 14 0.00048 35.2 9.0 71 470-544 126-207 (262)
236 1fuu_A Yeast initiation factor 71.6 17 0.00058 36.5 10.2 89 451-544 66-168 (394)
237 3b85_A Phosphate starvation-in 71.3 4.2 0.00014 37.6 4.9 30 249-278 9-38 (208)
238 3sqw_A ATP-dependent RNA helic 71.1 40 0.0014 36.2 13.6 78 297-381 287-368 (579)
239 3fht_A ATP-dependent RNA helic 70.9 13 0.00043 37.8 9.0 71 298-378 266-340 (412)
240 1w36_B RECB, exodeoxyribonucle 70.4 8 0.00027 45.9 8.2 60 264-323 18-81 (1180)
241 1tf7_A KAIC; homohexamer, hexa 70.1 20 0.0007 38.1 10.7 125 260-412 279-416 (525)
242 3pey_A ATP-dependent RNA helic 69.9 14 0.00047 37.1 9.1 76 297-382 242-321 (395)
243 1ofh_A ATP-dependent HSL prote 69.9 12 0.00042 36.2 8.4 26 261-288 49-74 (310)
244 2d7d_A Uvrabc system protein B 69.5 27 0.00093 38.4 11.8 78 297-384 444-525 (661)
245 1lvg_A Guanylate kinase, GMP k 69.4 3.3 0.00011 37.9 3.7 26 261-288 3-28 (198)
246 2j37_W Signal recognition part 68.8 31 0.0011 36.5 11.5 16 264-279 103-118 (504)
247 1kgd_A CASK, peripheral plasma 68.7 2.8 9.7E-05 37.6 3.0 19 260-278 3-21 (180)
248 1hv8_A Putative ATP-dependent 68.3 14 0.00047 36.7 8.5 73 297-379 237-313 (367)
249 3vaa_A Shikimate kinase, SK; s 67.8 3.2 0.00011 37.9 3.3 18 261-278 24-41 (199)
250 2px0_A Flagellar biosynthesis 67.8 5.9 0.0002 38.9 5.4 19 261-279 104-122 (296)
251 2r44_A Uncharacterized protein 67.5 4.2 0.00014 40.4 4.4 30 256-287 40-69 (331)
252 1s2m_A Putative ATP-dependent 67.5 24 0.00083 35.5 10.3 72 469-544 88-169 (400)
253 3hws_A ATP-dependent CLP prote 67.4 11 0.00036 38.1 7.4 26 261-288 50-75 (363)
254 4b4t_I 26S protease regulatory 67.1 3.4 0.00012 42.8 3.5 54 222-278 176-232 (437)
255 2j0s_A ATP-dependent RNA helic 66.6 29 0.00099 35.1 10.7 72 469-544 104-185 (410)
256 3nbx_X ATPase RAVA; AAA+ ATPas 66.4 7.1 0.00024 41.4 6.0 28 251-278 30-57 (500)
257 1tue_A Replication protein E1; 66.1 8.7 0.0003 35.4 5.7 74 195-286 4-81 (212)
258 2db3_A ATP-dependent RNA helic 65.9 17 0.00057 37.6 8.7 69 300-378 302-374 (434)
259 1c4o_A DNA nucleotide excision 65.3 48 0.0016 36.4 12.7 76 298-383 439-518 (664)
260 4ag6_A VIRB4 ATPase, type IV s 65.1 6.7 0.00023 40.1 5.4 41 261-309 34-74 (392)
261 2bjv_A PSP operon transcriptio 64.7 4.5 0.00015 38.7 3.8 19 260-278 27-45 (265)
262 2xxa_A Signal recognition part 64.5 19 0.00063 37.4 8.6 18 263-280 101-118 (433)
263 3i32_A Heat resistant RNA depe 64.4 12 0.00041 36.7 6.8 71 298-378 28-102 (300)
264 3trf_A Shikimate kinase, SK; a 64.4 4 0.00014 36.5 3.2 17 262-278 5-21 (185)
265 2gza_A Type IV secretion syste 64.3 4.7 0.00016 40.8 4.0 20 259-278 172-191 (361)
266 3tau_A Guanylate kinase, GMP k 64.2 4.1 0.00014 37.5 3.3 18 261-278 7-24 (208)
267 3fmo_B ATP-dependent RNA helic 64.0 13 0.00046 36.2 7.2 105 471-586 163-284 (300)
268 3iij_A Coilin-interacting nucl 64.0 2.8 9.6E-05 37.4 2.0 19 260-278 9-27 (180)
269 1wv9_A Rhodanese homolog TT165 64.0 7.9 0.00027 30.3 4.5 41 464-505 48-88 (94)
270 3eiq_A Eukaryotic initiation f 63.9 30 0.001 34.9 10.2 91 451-544 85-189 (414)
271 1qhx_A CPT, protein (chloramph 63.6 4.1 0.00014 36.1 3.0 17 262-278 3-19 (178)
272 1kag_A SKI, shikimate kinase I 63.3 4.9 0.00017 35.4 3.5 24 262-287 4-27 (173)
273 2j41_A Guanylate kinase; GMP, 63.2 4.1 0.00014 37.1 3.1 19 260-278 4-22 (207)
274 3bgw_A DNAB-like replicative h 63.1 7.5 0.00026 40.6 5.3 38 261-306 196-233 (444)
275 3lw7_A Adenylate kinase relate 63.0 3.3 0.00011 36.3 2.3 15 264-278 3-17 (179)
276 3a8t_A Adenylate isopentenyltr 62.8 4 0.00014 40.8 3.0 16 263-278 41-56 (339)
277 1u0j_A DNA replication protein 62.5 12 0.00043 35.8 6.3 42 234-278 73-120 (267)
278 3tr0_A Guanylate kinase, GMP k 62.1 4.4 0.00015 36.8 3.1 25 261-287 6-30 (205)
279 2x8a_A Nuclear valosin-contain 62.0 1.9 6.5E-05 41.9 0.5 59 223-286 5-66 (274)
280 1j8m_F SRP54, signal recogniti 62.0 12 0.0004 36.7 6.3 17 262-278 98-114 (297)
281 2qor_A Guanylate kinase; phosp 61.8 4 0.00014 37.4 2.7 20 259-278 9-28 (204)
282 4a2p_A RIG-I, retinoic acid in 61.8 7.4 0.00025 41.5 5.2 71 470-544 55-136 (556)
283 2zr9_A Protein RECA, recombina 61.8 7.8 0.00027 39.0 5.0 38 261-306 60-97 (349)
284 2qmh_A HPR kinase/phosphorylas 61.7 3.8 0.00013 37.6 2.4 18 261-278 33-50 (205)
285 1kht_A Adenylate kinase; phosp 61.5 4.8 0.00017 36.0 3.2 18 261-278 2-19 (192)
286 3hr8_A Protein RECA; alpha and 61.4 7.1 0.00024 39.4 4.6 38 262-307 61-98 (356)
287 3ney_A 55 kDa erythrocyte memb 61.2 4.8 0.00017 36.9 3.1 19 260-278 17-35 (197)
288 1u94_A RECA protein, recombina 61.2 7.8 0.00027 39.1 4.9 38 261-306 62-99 (356)
289 3foj_A Uncharacterized protein 61.1 5.1 0.00017 31.9 2.9 37 469-505 55-91 (100)
290 1xp8_A RECA protein, recombina 61.0 8.2 0.00028 39.1 5.0 38 261-306 73-110 (366)
291 3exa_A TRNA delta(2)-isopenten 60.9 4.3 0.00015 40.2 2.8 16 263-278 4-19 (322)
292 1zp6_A Hypothetical protein AT 60.9 4.5 0.00015 36.3 2.8 18 261-278 8-25 (191)
293 3cm0_A Adenylate kinase; ATP-b 60.5 3.8 0.00013 36.6 2.2 18 261-278 3-20 (186)
294 3t15_A Ribulose bisphosphate c 60.3 6.1 0.00021 38.6 3.8 24 263-288 37-60 (293)
295 2ze6_A Isopentenyl transferase 60.2 4.8 0.00016 38.4 3.0 15 264-278 3-17 (253)
296 2ewv_A Twitching motility prot 60.2 4.7 0.00016 41.0 3.1 19 260-278 134-152 (372)
297 1rj9_A FTSY, signal recognitio 60.1 8.7 0.0003 37.8 4.9 26 262-289 102-127 (304)
298 3cmw_A Protein RECA, recombina 59.9 7.2 0.00025 47.6 5.0 122 261-416 1430-1570(1706)
299 3foz_A TRNA delta(2)-isopenten 59.6 5 0.00017 39.6 3.0 15 264-278 12-26 (316)
300 4a74_A DNA repair and recombin 59.4 11 0.00037 34.8 5.3 18 261-278 24-41 (231)
301 4f4c_A Multidrug resistance pr 59.4 2.8 9.7E-05 50.3 1.4 44 370-413 1233-1276(1321)
302 1ojl_A Transcriptional regulat 59.4 10 0.00035 37.2 5.3 39 261-306 24-62 (304)
303 2pt7_A CAG-ALFA; ATPase, prote 59.4 5 0.00017 40.1 3.0 20 259-278 168-187 (330)
304 1tf5_A Preprotein translocase 59.3 20 0.00067 40.3 8.0 70 469-544 123-209 (844)
305 1lv7_A FTSH; alpha/beta domain 59.1 6.6 0.00022 37.3 3.8 24 262-287 45-68 (257)
306 1cr0_A DNA primase/helicase; R 59.0 11 0.00037 36.7 5.4 18 261-278 34-51 (296)
307 1y63_A LMAJ004144AAA protein; 58.9 5.9 0.0002 35.5 3.2 18 261-278 9-26 (184)
308 1yks_A Genome polyprotein [con 58.7 10 0.00036 39.4 5.6 68 298-377 177-245 (440)
309 3dkp_A Probable ATP-dependent 58.6 6.8 0.00023 36.8 3.8 72 470-544 98-181 (245)
310 2v6i_A RNA helicase; membrane, 58.4 13 0.00043 38.6 6.1 54 298-356 171-225 (431)
311 3iwh_A Rhodanese-like domain p 58.4 5 0.00017 32.4 2.4 36 469-504 55-90 (103)
312 3eme_A Rhodanese-like domain p 58.0 5.4 0.00019 31.9 2.5 37 469-505 55-91 (103)
313 3g5j_A Putative ATP/GTP bindin 57.9 5.2 0.00018 33.5 2.5 36 471-506 90-126 (134)
314 3flh_A Uncharacterized protein 57.8 7.3 0.00025 32.4 3.4 46 460-505 61-108 (124)
315 4gp7_A Metallophosphoesterase; 57.6 4.3 0.00015 36.0 2.0 18 261-278 8-25 (171)
316 1ex7_A Guanylate kinase; subst 57.5 5.2 0.00018 36.3 2.6 16 263-278 2-17 (186)
317 1z6g_A Guanylate kinase; struc 57.5 6.9 0.00023 36.3 3.5 26 260-287 21-46 (218)
318 4akg_A Glutathione S-transfera 57.4 12 0.00042 47.9 6.6 47 232-279 890-940 (2695)
319 3a00_A Guanylate kinase, GMP k 57.3 6.7 0.00023 35.2 3.3 24 263-288 2-25 (186)
320 3vkg_A Dynein heavy chain, cyt 57.3 15 0.00052 47.6 7.4 55 232-289 873-931 (3245)
321 3kta_A Chromosome segregation 57.1 7.1 0.00024 34.7 3.4 23 264-288 28-50 (182)
322 2c95_A Adenylate kinase 1; tra 56.8 7.5 0.00026 34.9 3.6 20 259-278 6-25 (196)
323 1f2t_A RAD50 ABC-ATPase; DNA d 56.8 7.6 0.00026 33.6 3.4 23 264-288 25-47 (149)
324 3b9p_A CG5977-PA, isoform A; A 56.4 6 0.00021 38.5 3.0 17 262-278 54-70 (297)
325 2r8r_A Sensor protein; KDPD, P 56.3 12 0.0004 35.1 4.8 17 264-280 8-24 (228)
326 3u4q_B ATP-dependent helicase/ 56.2 10 0.00034 45.0 5.4 50 266-321 5-54 (1166)
327 3kb2_A SPBC2 prophage-derived 56.1 6.4 0.00022 34.4 3.0 15 264-278 3-17 (173)
328 3b9q_A Chloroplast SRP recepto 56.1 7.8 0.00027 38.1 3.8 26 261-288 99-124 (302)
329 2cvh_A DNA repair and recombin 56.1 13 0.00044 34.0 5.2 18 261-278 19-36 (220)
330 4f4c_A Multidrug resistance pr 56.0 9.5 0.00032 45.8 5.2 44 370-413 570-613 (1321)
331 1ly1_A Polynucleotide kinase; 55.8 6.6 0.00023 34.6 3.0 15 264-278 4-18 (181)
332 3nwj_A ATSK2; P loop, shikimat 55.7 8.3 0.00028 36.8 3.8 26 260-287 46-71 (250)
333 4eun_A Thermoresistant glucoki 55.6 7.2 0.00025 35.5 3.3 25 261-287 28-52 (200)
334 3crm_A TRNA delta(2)-isopenten 55.5 6.3 0.00022 39.1 3.0 15 264-278 7-21 (323)
335 3uk6_A RUVB-like 2; hexameric 55.3 6.7 0.00023 39.5 3.3 17 262-278 70-86 (368)
336 1znw_A Guanylate kinase, GMP k 54.7 7.6 0.00026 35.5 3.3 29 258-288 16-44 (207)
337 1s96_A Guanylate kinase, GMP k 54.5 7.6 0.00026 36.1 3.3 28 258-287 12-39 (219)
338 1knq_A Gluconate kinase; ALFA/ 54.5 6.5 0.00022 34.7 2.7 17 262-278 8-24 (175)
339 2yvu_A Probable adenylyl-sulfa 53.7 9.5 0.00032 34.0 3.7 18 261-278 12-29 (186)
340 2v54_A DTMP kinase, thymidylat 53.6 6.2 0.00021 35.8 2.4 18 261-278 3-20 (204)
341 1ak2_A Adenylate kinase isoenz 53.1 7.6 0.00026 36.3 3.0 18 261-278 15-32 (233)
342 3d3q_A TRNA delta(2)-isopenten 52.4 7.6 0.00026 38.8 3.0 16 264-279 9-24 (340)
343 1tev_A UMP-CMP kinase; ploop, 52.3 7.2 0.00025 34.9 2.7 17 262-278 3-19 (196)
344 2plr_A DTMP kinase, probable t 52.1 6.9 0.00024 35.6 2.5 18 261-278 3-20 (213)
345 2og2_A Putative signal recogni 51.6 9.9 0.00034 38.4 3.8 26 261-288 156-181 (359)
346 1um8_A ATP-dependent CLP prote 51.5 11 0.00037 38.2 4.1 25 261-287 71-95 (376)
347 1ye8_A Protein THEP1, hypothet 51.5 10 0.00035 33.9 3.5 23 264-288 2-24 (178)
348 1m7g_A Adenylylsulfate kinase; 51.5 12 0.00039 34.4 4.0 29 249-278 13-41 (211)
349 3t61_A Gluconokinase; PSI-biol 51.4 8.5 0.00029 34.9 3.0 16 263-278 19-34 (202)
350 2i3b_A HCR-ntpase, human cance 51.4 11 0.00039 34.0 3.8 25 262-288 1-25 (189)
351 2rhm_A Putative kinase; P-loop 51.2 8.9 0.00031 34.3 3.1 17 262-278 5-21 (193)
352 2bwj_A Adenylate kinase 5; pho 51.0 9.7 0.00033 34.2 3.4 18 261-278 11-28 (199)
353 3uie_A Adenylyl-sulfate kinase 51.0 8 0.00027 35.1 2.8 18 261-278 24-41 (200)
354 2c9o_A RUVB-like 1; hexameric 50.8 8.2 0.00028 40.4 3.1 17 262-278 63-79 (456)
355 3c8u_A Fructokinase; YP_612366 50.7 8.4 0.00029 35.3 2.9 26 261-288 21-46 (208)
356 2xau_A PRE-mRNA-splicing facto 50.5 27 0.00093 39.2 7.5 75 298-378 303-393 (773)
357 1zu4_A FTSY; GTPase, signal re 50.5 10 0.00036 37.5 3.7 18 261-278 104-121 (320)
358 3tqc_A Pantothenate kinase; bi 50.2 27 0.00093 34.5 6.7 24 264-289 94-117 (321)
359 1iy2_A ATP-dependent metallopr 50.1 9.9 0.00034 36.6 3.4 23 263-287 74-96 (278)
360 1nks_A Adenylate kinase; therm 50.0 9.5 0.00033 34.0 3.1 15 264-278 3-17 (194)
361 3sr0_A Adenylate kinase; phosp 49.9 11 0.00038 34.7 3.5 16 264-279 2-17 (206)
362 2bdt_A BH3686; alpha-beta prot 49.8 9.4 0.00032 34.1 3.0 16 263-278 3-18 (189)
363 2yjt_D ATP-dependent RNA helic 55.1 3.5 0.00012 36.6 0.0 71 298-378 30-104 (170)
364 4a2q_A RIG-I, retinoic acid in 49.4 22 0.00074 40.1 6.6 71 470-544 296-377 (797)
365 2r2a_A Uncharacterized protein 49.3 11 0.00037 34.5 3.3 16 264-279 7-22 (199)
366 1via_A Shikimate kinase; struc 49.3 11 0.00036 33.3 3.3 15 264-278 6-20 (175)
367 1zuh_A Shikimate kinase; alpha 49.2 9.8 0.00033 33.3 3.0 16 263-278 8-23 (168)
368 1zak_A Adenylate kinase; ATP:A 49.2 11 0.00039 34.7 3.6 16 263-278 6-21 (222)
369 1tq1_A AT5G66040, senescence-a 49.0 19 0.00064 30.1 4.6 37 469-505 81-118 (129)
370 1zd8_A GTP:AMP phosphotransfer 49.0 10 0.00036 35.1 3.3 17 262-278 7-23 (227)
371 3ice_A Transcription terminati 48.9 87 0.003 31.9 10.0 29 250-278 159-190 (422)
372 2pez_A Bifunctional 3'-phospho 48.9 11 0.00036 33.5 3.2 25 261-287 4-28 (179)
373 1in4_A RUVB, holliday junction 48.8 11 0.00039 37.4 3.7 24 263-288 52-75 (334)
374 2fsf_A Preprotein translocase 48.7 20 0.0007 40.2 5.9 70 469-544 114-200 (853)
375 3eph_A TRNA isopentenyltransfe 48.7 9.4 0.00032 39.1 3.0 16 264-279 4-19 (409)
376 1gmx_A GLPE protein; transfera 48.7 12 0.00042 30.0 3.3 38 469-506 57-95 (108)
377 1aky_A Adenylate kinase; ATP:A 48.7 11 0.00036 34.8 3.3 17 262-278 4-20 (220)
378 1xjc_A MOBB protein homolog; s 48.6 19 0.00065 31.9 4.7 15 264-278 6-20 (169)
379 3asz_A Uridine kinase; cytidin 48.6 11 0.00038 34.3 3.4 24 262-287 6-29 (211)
380 1qf9_A UMP/CMP kinase, protein 48.2 11 0.00036 33.6 3.1 15 264-278 8-22 (194)
381 3umf_A Adenylate kinase; rossm 48.1 10 0.00036 35.2 3.0 18 262-279 29-46 (217)
382 3tbk_A RIG-I helicase domain; 48.0 15 0.00051 39.0 4.7 71 470-544 52-133 (555)
383 1nij_A Hypothetical protein YJ 48.0 14 0.00046 36.6 4.1 15 264-278 6-20 (318)
384 3qks_A DNA double-strand break 47.7 12 0.00041 34.2 3.4 24 264-289 25-48 (203)
385 2v9p_A Replication protein E1; 47.7 12 0.00042 36.7 3.6 26 261-288 125-150 (305)
386 2oca_A DAR protein, ATP-depend 47.6 1.5E+02 0.0052 30.7 12.7 75 299-382 348-426 (510)
387 3d8b_A Fidgetin-like protein 1 47.6 10 0.00035 38.1 3.2 18 261-278 116-133 (357)
388 2iyv_A Shikimate kinase, SK; t 47.2 13 0.00043 33.1 3.4 16 263-278 3-18 (184)
389 3fb4_A Adenylate kinase; psych 47.0 11 0.00037 34.6 3.0 15 264-278 2-16 (216)
390 2ykg_A Probable ATP-dependent 46.8 20 0.0007 39.4 5.8 70 471-544 62-142 (696)
391 3nzo_A UDP-N-acetylglucosamine 46.5 1.3E+02 0.0044 30.4 11.5 90 253-355 26-119 (399)
392 3lnc_A Guanylate kinase, GMP k 46.4 8.4 0.00029 35.9 2.1 18 261-278 26-43 (231)
393 4fcw_A Chaperone protein CLPB; 46.2 23 0.0008 34.3 5.5 23 263-287 48-70 (311)
394 3auy_A DNA double-strand break 46.2 12 0.00042 37.8 3.5 21 264-286 27-47 (371)
395 2r62_A Cell division protease 46.0 5.9 0.0002 37.9 1.0 17 262-278 44-60 (268)
396 3nwn_A Kinesin-like protein KI 46.0 16 0.00054 36.8 4.2 24 255-278 96-121 (359)
397 4gl2_A Interferon-induced heli 45.9 4.8 0.00016 44.7 0.4 70 471-544 57-142 (699)
398 2jaq_A Deoxyguanosine kinase; 45.9 12 0.0004 33.8 3.0 22 264-287 2-23 (205)
399 3dl0_A Adenylate kinase; phosp 45.9 12 0.00039 34.4 3.0 15 264-278 2-16 (216)
400 1e6c_A Shikimate kinase; phosp 45.7 13 0.00044 32.5 3.2 16 263-278 3-18 (173)
401 2wwf_A Thymidilate kinase, put 45.6 13 0.00044 33.8 3.3 18 261-278 9-26 (212)
402 3rc3_A ATP-dependent RNA helic 45.5 48 0.0016 36.5 8.3 75 299-384 321-401 (677)
403 1nn5_A Similar to deoxythymidy 45.4 12 0.00043 33.9 3.2 18 261-278 8-25 (215)
404 4a2w_A RIG-I, retinoic acid in 45.3 34 0.0012 39.3 7.4 71 470-544 296-377 (936)
405 2cdn_A Adenylate kinase; phosp 45.3 13 0.00045 33.6 3.3 16 263-278 21-36 (201)
406 1gvn_B Zeta; postsegregational 45.2 10 0.00036 36.8 2.7 16 263-278 34-49 (287)
407 1q57_A DNA primase/helicase; d 45.1 17 0.00057 38.5 4.5 39 261-306 241-279 (503)
408 3hix_A ALR3790 protein; rhodan 44.8 16 0.00056 29.2 3.4 36 470-505 52-88 (106)
409 3nhv_A BH2092 protein; alpha-b 44.7 18 0.00063 30.9 4.0 37 469-505 71-109 (144)
410 3be4_A Adenylate kinase; malar 44.7 14 0.00047 34.1 3.3 17 262-278 5-21 (217)
411 2ius_A DNA translocase FTSK; n 44.6 26 0.00088 37.1 5.8 18 261-278 166-183 (512)
412 1v5w_A DMC1, meiotic recombina 44.6 24 0.00082 35.2 5.3 44 261-306 121-164 (343)
413 1htw_A HI0065; nucleotide-bind 44.6 14 0.00047 32.4 3.1 27 260-288 31-57 (158)
414 1g41_A Heat shock protein HSLU 44.5 57 0.0019 33.8 8.2 25 262-288 50-74 (444)
415 1ukz_A Uridylate kinase; trans 44.3 13 0.00044 33.7 3.0 15 264-278 17-31 (203)
416 3b6e_A Interferon-induced heli 44.2 13 0.00046 33.6 3.2 71 470-544 82-168 (216)
417 1e4v_A Adenylate kinase; trans 44.0 13 0.00045 34.0 3.1 15 264-278 2-16 (214)
418 2z0m_A 337AA long hypothetical 43.9 54 0.0019 31.7 7.9 70 470-544 56-135 (337)
419 3qf7_A RAD50; ABC-ATPase, ATPa 43.8 13 0.00046 37.5 3.3 16 264-279 25-40 (365)
420 2zan_A Vacuolar protein sortin 43.7 12 0.0004 39.0 3.0 58 223-286 129-189 (444)
421 1cke_A CK, MSSA, protein (cyti 43.4 13 0.00045 34.2 3.0 22 263-286 6-27 (227)
422 1bg2_A Kinesin; motor protein, 43.4 18 0.00062 35.9 4.1 24 255-278 69-94 (325)
423 2pt5_A Shikimate kinase, SK; a 42.9 14 0.00048 32.1 3.0 21 264-286 2-22 (168)
424 3dmn_A Putative DNA helicase; 42.8 66 0.0023 28.2 7.5 65 470-549 61-125 (174)
425 2if2_A Dephospho-COA kinase; a 42.7 14 0.00049 33.3 3.1 15 264-278 3-17 (204)
426 2pbr_A DTMP kinase, thymidylat 42.6 14 0.00048 32.8 3.0 14 265-278 3-16 (195)
427 4etp_A Kinesin-like protein KA 42.5 19 0.00065 36.9 4.2 24 255-278 132-157 (403)
428 1g8p_A Magnesium-chelatase 38 42.4 16 0.00055 36.2 3.7 26 261-288 44-69 (350)
429 1jjv_A Dephospho-COA kinase; P 42.4 14 0.00049 33.4 3.0 15 264-278 4-18 (206)
430 3tif_A Uncharacterized ABC tra 42.3 14 0.00049 34.6 3.1 18 261-278 30-47 (235)
431 3dc4_A Kinesin-like protein NO 42.2 17 0.00059 36.3 3.8 23 256-278 87-111 (344)
432 2bbw_A Adenylate kinase 4, AK4 42.2 14 0.00047 34.8 3.0 17 262-278 27-43 (246)
433 2vli_A Antibiotic resistance p 42.1 11 0.00039 33.2 2.3 17 262-278 5-21 (183)
434 2qt1_A Nicotinamide riboside k 42.0 15 0.00051 33.4 3.1 18 261-278 20-37 (207)
435 3tlx_A Adenylate kinase 2; str 41.7 15 0.0005 34.7 3.0 18 261-278 28-45 (243)
436 3k1j_A LON protease, ATP-depen 41.7 22 0.00074 38.7 4.8 30 257-288 55-84 (604)
437 3b6u_A Kinesin-like protein KI 41.6 20 0.0007 36.2 4.2 24 255-278 93-118 (372)
438 2wv9_A Flavivirin protease NS2 41.5 20 0.00069 39.5 4.5 68 298-377 410-478 (673)
439 2nr8_A Kinesin-like protein KI 41.3 21 0.00071 35.9 4.2 24 255-278 95-120 (358)
440 1t5c_A CENP-E protein, centrom 41.2 21 0.00071 35.8 4.2 24 255-278 69-94 (349)
441 2z0h_A DTMP kinase, thymidylat 41.2 15 0.00052 32.8 3.0 14 265-278 3-16 (197)
442 2jlq_A Serine protease subunit 41.2 20 0.00069 37.2 4.3 68 298-377 188-256 (451)
443 2xb4_A Adenylate kinase; ATP-b 41.2 15 0.00051 34.0 3.0 15 264-278 2-16 (223)
444 3a4m_A L-seryl-tRNA(SEC) kinas 41.2 15 0.0005 35.1 3.0 16 263-278 5-20 (260)
445 2y65_A Kinesin, kinesin heavy 41.2 20 0.00069 36.1 4.1 23 256-278 77-101 (365)
446 2vvg_A Kinesin-2; motor protei 40.9 21 0.00071 35.8 4.1 23 256-278 82-106 (350)
447 2iut_A DNA translocase FTSK; n 40.9 30 0.001 37.1 5.6 26 262-288 214-239 (574)
448 2h58_A Kinesin-like protein KI 40.8 21 0.00071 35.5 4.1 24 255-278 72-97 (330)
449 2fsx_A RV0390, COG0607: rhodan 40.7 26 0.0009 29.9 4.3 36 470-505 80-116 (148)
450 3io5_A Recombination and repai 40.6 33 0.0011 33.9 5.4 41 264-310 30-70 (333)
451 2whx_A Serine protease/ntpase/ 40.3 38 0.0013 36.9 6.4 68 298-377 355-423 (618)
452 1ry6_A Internal kinesin; kines 40.3 19 0.00065 36.3 3.7 18 261-278 82-101 (360)
453 1np6_A Molybdopterin-guanine d 40.2 30 0.001 30.7 4.7 16 263-278 7-22 (174)
454 3pxg_A Negative regulator of g 40.2 19 0.00065 37.7 3.9 18 261-278 200-217 (468)
455 3gbj_A KIF13B protein; kinesin 40.2 22 0.00075 35.7 4.2 24 255-278 84-109 (354)
456 1v8k_A Kinesin-like protein KI 40.0 22 0.00074 36.5 4.2 24 255-278 146-171 (410)
457 1uf9_A TT1252 protein; P-loop, 39.9 17 0.00058 32.7 3.1 15 264-278 10-24 (203)
458 2zfi_A Kinesin-like protein KI 39.9 22 0.00074 35.9 4.1 24 255-278 81-106 (366)
459 1goj_A Kinesin, kinesin heavy 39.7 21 0.00072 35.9 4.0 23 256-278 73-97 (355)
460 4a14_A Kinesin, kinesin-like p 39.6 22 0.00075 35.6 4.1 23 256-278 76-100 (344)
461 2f1r_A Molybdopterin-guanine d 39.6 11 0.00037 33.5 1.7 23 264-288 4-26 (171)
462 3lre_A Kinesin-like protein KI 39.6 21 0.00072 35.9 3.9 24 255-278 97-122 (355)
463 1nkt_A Preprotein translocase 39.4 36 0.0012 38.5 6.0 69 470-544 152-237 (922)
464 3czc_A RMPB; alpha/beta sandwi 39.3 41 0.0014 27.2 5.1 57 298-357 18-76 (110)
465 2k0z_A Uncharacterized protein 39.3 36 0.0012 27.3 4.7 36 470-505 56-91 (110)
466 3tqf_A HPR(Ser) kinase; transf 39.3 16 0.00056 32.6 2.7 18 261-278 15-32 (181)
467 3o8b_A HCV NS3 protease/helica 39.1 23 0.00079 38.8 4.5 67 297-377 395-461 (666)
468 3fkq_A NTRC-like two-domain pr 39.0 40 0.0014 33.9 6.1 26 355-381 243-268 (373)
469 3ipz_A Monothiol glutaredoxin- 38.6 58 0.002 26.0 5.9 46 469-514 16-67 (109)
470 4e22_A Cytidylate kinase; P-lo 38.5 18 0.00063 34.2 3.2 23 261-285 26-48 (252)
471 3zyw_A Glutaredoxin-3; metal b 38.4 52 0.0018 26.5 5.6 46 469-514 14-65 (111)
472 2cbz_A Multidrug resistance-as 38.4 15 0.00052 34.5 2.6 18 261-278 30-47 (237)
473 3p32_A Probable GTPase RV1496/ 38.3 2E+02 0.0067 28.5 11.1 15 264-278 81-95 (355)
474 3u06_A Protein claret segregat 38.2 21 0.00071 36.7 3.7 24 255-278 130-155 (412)
475 2fz4_A DNA repair protein RAD2 38.2 52 0.0018 30.6 6.4 62 451-527 116-178 (237)
476 2wbe_C Bipolar kinesin KRP-130 38.1 22 0.00074 36.0 3.8 23 256-278 93-117 (373)
477 1sgw_A Putative ABC transporte 38.1 17 0.00057 33.6 2.8 41 370-410 149-189 (214)
478 1qxn_A SUD, sulfide dehydrogen 38.0 22 0.00074 30.1 3.3 37 469-505 81-118 (137)
479 2v3c_C SRP54, signal recogniti 37.9 21 0.00071 37.0 3.7 17 263-279 100-116 (432)
480 2va8_A SSO2462, SKI2-type heli 37.8 1.3E+02 0.0045 33.0 10.6 76 298-379 252-363 (715)
481 4edh_A DTMP kinase, thymidylat 37.5 30 0.001 31.8 4.4 19 260-278 4-22 (213)
482 3f9v_A Minichromosome maintena 37.3 15 0.00051 39.9 2.6 15 264-278 329-343 (595)
483 2jtq_A Phage shock protein E; 37.2 29 0.00099 26.2 3.6 35 470-505 41-76 (85)
484 3l9o_A ATP-dependent RNA helic 37.1 20 0.0007 42.0 3.9 65 469-544 226-296 (1108)
485 2pcj_A ABC transporter, lipopr 37.1 17 0.00058 33.8 2.6 18 261-278 29-46 (224)
486 1x88_A Kinesin-like protein KI 37.0 25 0.00084 35.4 4.0 24 255-278 80-105 (359)
487 1rz3_A Hypothetical protein rb 36.8 20 0.00069 32.4 3.1 16 263-278 23-38 (201)
488 2pze_A Cystic fibrosis transme 36.7 17 0.00057 34.0 2.5 18 261-278 33-50 (229)
489 3h1t_A Type I site-specific re 36.4 65 0.0022 34.6 7.6 80 297-382 438-527 (590)
490 3e4c_A Caspase-1; zymogen, inf 36.4 56 0.0019 31.9 6.4 47 471-518 61-118 (302)
491 1z5z_A Helicase of the SNF2/RA 36.4 1.1E+02 0.0038 29.0 8.5 95 270-381 92-192 (271)
492 3gfo_A Cobalt import ATP-bindi 36.2 17 0.00057 35.2 2.5 18 261-278 33-50 (275)
493 4eaq_A DTMP kinase, thymidylat 36.1 22 0.00075 33.1 3.2 26 261-288 25-50 (229)
494 2r2a_A Uncharacterized protein 36.0 24 0.00081 32.2 3.4 40 373-412 88-132 (199)
495 3zq6_A Putative arsenical pump 36.0 36 0.0012 33.5 5.1 21 264-284 16-36 (324)
496 1g6h_A High-affinity branched- 35.6 18 0.0006 34.5 2.6 18 261-278 32-49 (257)
497 1vht_A Dephospho-COA kinase; s 35.5 21 0.00071 32.7 3.0 16 263-278 5-20 (218)
498 1gtv_A TMK, thymidylate kinase 35.5 14 0.00047 33.7 1.7 14 265-278 3-16 (214)
499 1c9k_A COBU, adenosylcobinamid 35.5 29 0.00098 31.1 3.8 45 265-321 2-46 (180)
500 2hhg_A Hypothetical protein RP 35.4 23 0.00078 29.8 3.0 36 469-504 85-121 (139)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-66 Score=560.62 Aligned_cols=391 Identities=41% Similarity=0.685 Sum_probs=362.0
Q ss_pred hcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 210 ~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
...+.+.|.+.|.|+.+|.+++|++.+++.+.+.||.+|+|+|++++|.+++|++++++++||||||++|++|++.+++.
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccc
Q 007090 290 QPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (618)
Q Consensus 290 ~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~ 369 (618)
.+......++++|||+|||+||.|+++++.+++...++++.+++||.....+...+..+++|+|+||++|.+++.+....
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 65444456889999999999999999999999988889999999999998888888889999999999999999888888
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhc--CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEE
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~--~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~ 447 (618)
+.++++|||||||+|++++|...+..++..+ ++.+|+++||||+|+.+..++..++.+++.+.++..+.....+.|.+
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999999999999885 67899999999999999999999999999999988887888888888
Q ss_pred EEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec
Q 007090 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (618)
Q Consensus 448 ~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT 527 (618)
..+. ...|...|...+... ..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 281 ~~~~-~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 281 YEVN-KYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EECC-GGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EEeC-cHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 7775 456778888877654 3459999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC-ccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007090 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSMELMDL 604 (618)
Q Consensus 528 ~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~-~d~~~~~~i~~~l~~~~~~v~~~l~~~ 604 (618)
+++++|+|+|+|++||+||+|.++..|+||+||+||.| +.|.|++|+++ .+...+..|++.|..++|.||++|.++
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g-~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG-NNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT-CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC-CCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999 57999999995 578999999999999999999998753
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-59 Score=504.31 Aligned_cols=394 Identities=41% Similarity=0.694 Sum_probs=354.8
Q ss_pred eeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCc
Q 007090 213 IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292 (618)
Q Consensus 213 ~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~ 292 (618)
+.+.|..+|+|+.+|.++++++.+++.+...||..|+|+|.++++.++.++++++++|||+|||++|++|++.++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred c-------------ccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH
Q 007090 293 L-------------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL 359 (618)
Q Consensus 293 ~-------------~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L 359 (618)
. ....++++||++||++||.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 122357899999999999999999999998888999999999999888888888999999999999
Q ss_pred HHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc--CC--CccEEEEeccccHHHHHHHHHHcCCCeEEEEcC
Q 007090 360 IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (618)
Q Consensus 360 ~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~--~~--~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (618)
.+.+......+..+++|||||||++.+++|...+..++... ++ .+|+++||||+++.+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99998887788999999999999999999999999998853 32 679999999999999999999999999888877
Q ss_pred ccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 007090 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515 (618)
Q Consensus 436 ~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~ 515 (618)
.......+.+.+..+. ...+...+...+......+++||||+++..++.+++.|...++.+..+||++++.+|..+++.
T Consensus 243 ~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 243 VGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ---CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 7777777888777764 456777888888766567799999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCC
Q 007090 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595 (618)
Q Consensus 516 F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~ 595 (618)
|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...++
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC-CCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 57999999999999999999999999999
Q ss_pred CCCHHHHHHHhhc
Q 007090 596 NVSMELMDLAMKV 608 (618)
Q Consensus 596 ~v~~~l~~~~~~~ 608 (618)
.+|.+|..++...
T Consensus 401 ~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 401 EVPSWLENMAYEH 413 (417)
T ss_dssp CCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHhh
Confidence 9999999988653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-56 Score=480.15 Aligned_cols=373 Identities=31% Similarity=0.536 Sum_probs=340.1
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 220 ~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
.+.+..+|.++++++.+++.+...|+.+|+|+|.++++.++++++++++++||+|||++|++|++.++.. ...++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-----~~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-----QVRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-----TSCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-----ccCCc
Confidence 3456778999999999999999999999999999999999999999999999999999999999887632 13467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvD 379 (618)
++||++||++|+.||++.+.+++...++.+..++||.....+...+..+++|+|+||++|.+.+......+..+++||||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 89999999999999999999999888999999999999988888888899999999999999998887888899999999
Q ss_pred chhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHH
Q 007090 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (618)
Q Consensus 380 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (618)
|||++.+++|...+..++..+++..|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....+...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 99999999999999999999999999999999999999888899999999888777777777888888888766667777
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCc
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v 539 (618)
+...+... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 77766543 35699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCH
Q 007090 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (618)
Q Consensus 540 ~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~ 599 (618)
++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+.++.+.+...-..+|.
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYG-RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CEEEEECCCCCHHHHHHhcccccCCC-CceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999 579999999999999999998887766655553
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.7e-56 Score=473.71 Aligned_cols=379 Identities=31% Similarity=0.530 Sum_probs=330.9
Q ss_pred CCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCC
Q 007090 219 DVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (618)
Q Consensus 219 ~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 298 (618)
..+..+.+|.++++++.+++.+...++..|+++|.++++.++++++++++++||+|||++|++|++.++... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 345677899999999999999999999999999999999999999999999999999999999999886432 246
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEEE
Q 007090 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (618)
Q Consensus 299 ~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iI 377 (618)
+++||++||++|+.|+++.+.+++...+..+...+|+.........+. .+++|+|+||++|.+.+......+..+++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 789999999999999999999999888999999999998888777766 6789999999999999988888888999999
Q ss_pred ecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccH
Q 007090 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (618)
Q Consensus 378 vDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 457 (618)
|||||++.++++...+..++..+++..|+++||||+++.+..++..++.++..+...........+.+.+..+.....+.
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHH
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999888777777778888888887777788
Q ss_pred HHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcC
Q 007090 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (618)
Q Consensus 458 ~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~ 537 (618)
..+...+... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 269 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 269 DTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 8887777654 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007090 538 SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (618)
Q Consensus 538 ~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~~ 604 (618)
++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 348 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 348 QVSLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GCSCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCCEEEEeCCCCCHHHhhhhcCcccCCC-CCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999 57999999999999999999999998888888887654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.4e-53 Score=454.22 Aligned_cols=371 Identities=29% Similarity=0.504 Sum_probs=326.5
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeE
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 301 (618)
.+..+|+++++++.+++.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 455789999999999999999999999999999999999999999999999999999999999886432 246789
Q ss_pred EEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecch
Q 007090 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (618)
Q Consensus 302 LIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEa 381 (618)
||++||++|+.|+++.+.+++...++++....|+.....+...+..+++|+|+||++|.+.+......+..+++||||||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999999988889999999999888777777788999999999999998877777899999999999
Q ss_pred hhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHH
Q 007090 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (618)
Q Consensus 382 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~ 461 (618)
|++.+.+|...+..++..+++..|+++||||+++.+..++..++..|..+.... ......+.+.+..+. ...+...+.
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~k~~~l~ 250 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVE-ERQKLHCLN 250 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECC-GGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEec-hhhHHHHHH
Confidence 999988888888899998889999999999999999999999999887765433 233445666665553 345666666
Q ss_pred HhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccE
Q 007090 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (618)
Q Consensus 462 ~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~ 541 (618)
..+... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 251 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 251 TLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 655433 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHH
Q 007090 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601 (618)
Q Consensus 542 VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l 601 (618)
||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..|.+.+...-+.+|..+
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFG-HLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTT-CCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEEeCCCCCHHHHHHhcchhcCCC-CCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 999999999999999999999999 57999999999999999998888776666666543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4e-53 Score=449.13 Aligned_cols=368 Identities=28% Similarity=0.484 Sum_probs=320.5
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
.+|+++++++.+++.+...|+..|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999998876432 236789999
Q ss_pred cccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
+||++|+.||.+.+.++.... ++++..+.|+.........+..+ ++|+|+||++|...+......+..+++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999998765 78999999998887776666654 7999999999999998877788999999999999
Q ss_pred hhhcC-CChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcc-ccccceeEEEEEcCCCcccHHHH
Q 007090 383 RMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWL 460 (618)
Q Consensus 383 ~~~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~q~~~~~~~~~~k~~~l 460 (618)
++.++ ++...+..++..+++..|++++|||+++.+..++..++.+|..+.+.... .....+.+.+..+. ...+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 241 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK-DNEKNRKL 241 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC-GGGHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC-chhHHHHH
Confidence 99874 67788888888888899999999999999999999999999888765543 23345566655553 45666777
Q ss_pred HHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCcc
Q 007090 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (618)
Q Consensus 461 ~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~ 540 (618)
...+... ..+++||||+++..+..+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 242 ~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 242 FDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 6666543 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCc-cHHHHHHHHHHHHHcCCCCCHH
Q 007090 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSME 600 (618)
Q Consensus 541 ~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~-d~~~~~~i~~~l~~~~~~v~~~ 600 (618)
+||+|++|+++..|+||+||+||.| +.|.|++++++. +..++..+.+.+......+|.+
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSC-CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCC-CceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999 679999999986 5566777777766665566554
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-54 Score=461.49 Aligned_cols=376 Identities=30% Similarity=0.517 Sum_probs=191.8
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 220 ~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
..++..+|+++++++.+.+.+...|+..|+|+|+++++.+++++++++++|||+|||++|++|++.++... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45777899999999999999999999999999999999999999999999999999999999999886432 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvD 379 (618)
++||++||++|+.|+++.+.+++...++++..++|+.........+. +++|+|+||++|.+.+......+..+++||||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 89999999999999999999999888899999999988776665554 58999999999999998877778899999999
Q ss_pred chhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHH
Q 007090 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (618)
Q Consensus 380 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (618)
|||++.++++...+..++..+++..|++++|||+++.+..+...++.+|..+...........+.+.+..+.....+...
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999888776665566666666655554446666
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCc
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v 539 (618)
+...+... ..+++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++
T Consensus 250 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 250 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 65555432 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHHHH
Q 007090 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603 (618)
Q Consensus 540 ~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l~~ 603 (618)
++||+|++|+++..|+||+||+||.| +.|.|++++++.+...+..+.+.+...-..+|..+.+
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCC-CCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 99999999999999999999999999 5799999999999999999988888777777766554
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.6e-52 Score=435.50 Aligned_cols=358 Identities=35% Similarity=0.607 Sum_probs=319.5
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
..+|+++++++.+++.+...|+..|+|+|.++++.++++ +++++++|||+|||++|++|++.++.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 799999999999999999998877643 2477899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
|++||++|+.|+++.+.++....++.+...+|+.....+...+. +++|+|+||++|.+.+......+.++++|||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888889999999988877766655 68999999999999998877778999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHH
Q 007090 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~ 462 (618)
++.++++...+..++..+++..+++++|||+++.+..++..++.++..+.... ...+.+.+..+ ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEV-NENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEEC-CGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEe-ChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988766554432 23455555554 34567888888
Q ss_pred hcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEE
Q 007090 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (618)
Q Consensus 463 ~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~V 542 (618)
.+.. ..+++||||+++..+..+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 8763 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCC
Q 007090 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (618)
Q Consensus 543 I~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~ 596 (618)
|++++|+++..|+||+||+||.| ++|.|++++++.+...+..|.+.+...-..
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAG-KKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSS-SCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred EEecCCCCHHHhhhcccccccCC-CccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999 579999999999999999988877654443
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.3e-52 Score=442.23 Aligned_cols=359 Identities=30% Similarity=0.515 Sum_probs=316.3
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
+...+|+++++++.+++.+...|+..|+|+|.++++.++++ +++++++|||+|||++|++|++.++... ..++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 76 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASP 76 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCc
Confidence 34688999999999999999999999999999999999998 9999999999999999999999886432 2467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvD 379 (618)
++||++||++|+.|+++.+.+++...++.+...+++...... ..+++|+|+||++|.+.+......+..+++||||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 899999999999999999999988888888888877544322 2368999999999999998877789999999999
Q ss_pred chhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHH
Q 007090 380 EADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (618)
Q Consensus 380 Eah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (618)
|||++.+ +++...+..+...+++..|+++||||+++.+..++..++.++..+...........+.+.+..+.....+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999988 678888889999999999999999999999999999999999888777766677778888887766666777
Q ss_pred HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCC
Q 007090 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (618)
Q Consensus 459 ~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~ 538 (618)
.+...+... ..+++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 776666543 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCC------CHHHHHHHHhhcccCCCCCeEEEEEecCcc-HHHHHHHHHHHH
Q 007090 539 IKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLI 591 (618)
Q Consensus 539 v~~VI~~~~p~------~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d-~~~~~~i~~~l~ 591 (618)
+++||+|++|+ ++..|+||+||+||.| +.|.|+++++..+ ...+..+.+.+.
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFG-RKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCC-CCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999 9999999999999999 5799999999754 455555555544
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.2e-52 Score=446.56 Aligned_cols=369 Identities=29% Similarity=0.454 Sum_probs=321.7
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCC
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 298 (618)
+.++.+|.++++++.+++.+.+.|+..|+|+|.++++.++++ +++++++|||+|||++|++|++.++... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 356789999999999999999999999999999999999987 9999999999999999999999886432 346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEE
Q 007090 299 PIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYL 376 (618)
Q Consensus 299 ~~vLIl~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~i 376 (618)
+++||++||++|+.|+++.+.++.... ++.+....++...... ...+++|+|+||++|.+.+.. ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 789999999999999999999997653 5777777777654322 134579999999999999855 45667899999
Q ss_pred Eecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcc
Q 007090 377 VLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (618)
Q Consensus 377 IvDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~ 455 (618)
||||||++.+ .++...+..++..+++..|+++||||+++.+..++..++.++..+...........+.+.+........
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 678888889999999999999999999999999999999999988887777777788888888776667
Q ss_pred cHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCC
Q 007090 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (618)
Q Consensus 456 k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gld 535 (618)
+...+...+... ..+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 253 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 253 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 777777666543 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEcCCCC------CHHHHHHHHhhcccCCCCCeEEEEEecCcc-HHHHHHHHHHHHHcCCCCCH
Q 007090 536 IKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSM 599 (618)
Q Consensus 536 i~~v~~VI~~~~p~------~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d-~~~~~~i~~~l~~~~~~v~~ 599 (618)
+|++++||+|++|+ +...|+||+||+||.| +.|.|++++++.+ ...+..+.+.+...-..++.
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCC-CCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999995 6789999999999999 5799999999764 77888888887766555543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.9e-52 Score=464.83 Aligned_cols=366 Identities=31% Similarity=0.470 Sum_probs=310.7
Q ss_pred ccCCccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccC
Q 007090 223 PVKTFEDCG----FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (618)
Q Consensus 223 p~~~~~~~~----l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (618)
+..+|.++. |++.+++.+...||..|+|+|.++++.++ .++++++++|||+|||++|++|++.++..... ...
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~ 93 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQ 93 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SST
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-ccc
Confidence 334566554 99999999999999999999999999999 78899999999999999999999999876532 223
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhh----cCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHcc-cccc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMK-ALTM 370 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~-~~~l 370 (618)
.++++|||+||++||.|+++.+.++... ..+.+..++||.....+...+. .+++|+||||++|.+.+... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 4678999999999999999999998743 3567888999998888877775 47999999999999988764 4567
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcC-------CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcc----cc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG----MA 439 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~-------~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~----~~ 439 (618)
..+++|||||||+|.+++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+.... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8899999999999999999999988877663 367999999999999999999999988777654422 23
Q ss_pred ccceeEEEEEcCCCcccHH----HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHH
Q 007090 440 NEDITQVVHVIPSDAEKLP----WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEI 512 (618)
Q Consensus 440 ~~~i~q~~~~~~~~~~k~~----~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~---~~~~~~l~g~~~~~~r~~~ 512 (618)
...+.+.+........+.. .+...+......+++||||+++..++.++..|... ++.+..+||++++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 3456666665554333332 23333333334679999999999999999999887 8999999999999999999
Q ss_pred HHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHH
Q 007090 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (618)
Q Consensus 513 ~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l 590 (618)
++.|++|+.+|||||+++++|+|+|+|++||+|++|.++..|+||+||+||.| +.|.|++|+++.+..++..|.+..
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCC-CCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 679999999999999888887664
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.3e-51 Score=458.82 Aligned_cols=358 Identities=31% Similarity=0.473 Sum_probs=305.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH
Q 007090 232 FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 309 (618)
|++.+++.+...|+..|+|+|.++++.++ .++++++++|||+|||++|++|++.++...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998765321 234678999999999
Q ss_pred HHHHHHHHHHHHHhh----cCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHcc-ccccCceeEEEecchhh
Q 007090 310 LAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADR 383 (618)
Q Consensus 310 La~q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~-~~~l~~~~~iIvDEah~ 383 (618)
||.|+++.+.++... ..+.+..++||.....+...+. .+++|+||||++|.+++... ...++.+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999998653 2467888899988888777764 47999999999999988764 34678899999999999
Q ss_pred hhcCCChHHHHHHHHhcC-------CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcc----ccccceeEEEEEcCC
Q 007090 384 MFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG----MANEDITQVVHVIPS 452 (618)
Q Consensus 384 ~~~~~~~~~i~~i~~~~~-------~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~----~~~~~i~q~~~~~~~ 452 (618)
|.+++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+.... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999988877653 367999999999999999999999988777654322 233456666665554
Q ss_pred CcccHHH----HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEE
Q 007090 453 DAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (618)
Q Consensus 453 ~~~k~~~----l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~---~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLV 525 (618)
...+... +...+......+++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3333332 3333333334679999999999999999999886 89999999999999999999999999999999
Q ss_pred ecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHH
Q 007090 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (618)
Q Consensus 526 aT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~ 591 (618)
||+++++|+|+|+|++||+|++|.++..|+||+||+||.| +.|.|++|+++.+..++..|.+...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCC-CCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 6799999999999988888876643
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.8e-53 Score=464.28 Aligned_cols=367 Identities=29% Similarity=0.460 Sum_probs=177.2
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCe
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (618)
++.+|.+++|++.+++.+...||..|+|+|.++++.++++ +++|++++||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999998876432 34678
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEe
Q 007090 301 GVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (618)
Q Consensus 301 vLIl~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~iIv 378 (618)
+|||+||++||.|+++.+.++.... ++.+.+..++...... ...+++|+|+||++|.+++.. ..+.+.++++|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999999987653 5677777776544322 123579999999999999865 4556789999999
Q ss_pred cchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccH
Q 007090 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (618)
Q Consensus 379 DEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 457 (618)
||||++.+ .++...+..++..+++.+|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....+.
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 321 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHH
Confidence 99999987 57888888999999999999999999999999999999999999888877777777788877776666676
Q ss_pred HHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcC
Q 007090 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (618)
Q Consensus 458 ~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~ 537 (618)
..+...+... ..+++||||++...+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 322 ~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 322 QALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 6666665533 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCC------CHHHHHHHHhhcccCCCCCeEEEEEecCcc-HHHHHHHHHHHHHcCCCCCH
Q 007090 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSM 599 (618)
Q Consensus 538 ~v~~VI~~~~p~------~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d-~~~~~~i~~~l~~~~~~v~~ 599 (618)
++++||+|++|+ ++..|+||+||+||.| +.|.|++|+++.+ ..++..|.+.+...-..++.
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g-~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCC-CCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 999999999995 5689999999999999 6799999998765 77777777777655554443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.3e-50 Score=415.50 Aligned_cols=335 Identities=32% Similarity=0.574 Sum_probs=291.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
|++.+.+.+...|+..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++||++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998764 56799999999999
Q ss_pred HHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChH
Q 007090 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEP 391 (618)
Q Consensus 312 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~ 391 (618)
.||++.+.+++...++++..++|+.....+...+. +++|+|+||++|.+.+......+..+++|||||||++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999988877766554 49999999999999988777778899999999999999999999
Q ss_pred HHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCC
Q 007090 392 QIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (618)
Q Consensus 392 ~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~ 471 (618)
.+..++..++...++++||||+++.+...+..++.++..+... .....+.+.+..+.... ......+.. ...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999999887766432 33445566665554332 222233332 2467
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCH
Q 007090 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (618)
Q Consensus 472 ~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~ 551 (618)
++||||++...+..+++.|. .+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999999886 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHH
Q 007090 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (618)
Q Consensus 552 ~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~ 591 (618)
..|+||+||+||.| +.|.|++++. .+...+..+.+.+.
T Consensus 298 ~~~~Q~~GR~gR~g-~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMG-RKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGG-CCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCC-CCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999 5799999999 88888888877654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.3e-48 Score=432.43 Aligned_cols=348 Identities=18% Similarity=0.300 Sum_probs=286.0
Q ss_pred ccCCcc--ccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 223 PVKTFE--DCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 223 p~~~~~--~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
....|. ++++++.+...|.. .|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.. .+
T Consensus 17 ~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g 85 (591)
T 2v1x_A 17 SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DG 85 (591)
T ss_dssp CGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SS
T ss_pred chhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CC
Confidence 334454 47888999999998 59999999999999999999999999999999999999999753 45
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---H---HcCCcEEEeChHHHHH---HHH--cccc
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---L---KAGCEIVIATPGRLID---MLK--MKAL 368 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~dIiv~Tp~~L~~---~l~--~~~~ 368 (618)
.+|||+|+++|+.|+++.+.++ ++.+..+.|+....+.... + ..+++|+|+||++|.. ++. ....
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~ 161 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 161 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH
T ss_pred cEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh
Confidence 7999999999999999999887 8889888888876654332 2 3468999999998742 221 1234
Q ss_pred ccCceeEEEecchhhhhcCC--ChHHHHH--HHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCcccccccee
Q 007090 369 TMSRVTYLVLDEADRMFDLG--FEPQIRS--IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDIT 444 (618)
Q Consensus 369 ~l~~~~~iIvDEah~~~~~~--~~~~i~~--i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~ 444 (618)
.+..+++|||||||++.+|+ |.+.+.. ++....+..++++||||+++.+...+..++..+....+.. .....++.
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~ 240 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLY 240 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEE
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccE
Confidence 57789999999999999988 7776654 4555567899999999999998888888877653333322 22233343
Q ss_pred EEEEEcCC-CcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceE
Q 007090 445 QVVHVIPS-DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (618)
Q Consensus 445 q~~~~~~~-~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~V 523 (618)
..+..... ...+...+...+......+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+.|+.+|
T Consensus 241 ~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~V 320 (591)
T 2v1x_A 241 YEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQV 320 (591)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 33332221 12345667777765555679999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHH
Q 007090 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (618)
Q Consensus 524 LVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~ 587 (618)
||||+++++|+|+|+|++||+|++|.++..|+||+||+||.| ++|.|++|+++.|...+..++
T Consensus 321 lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G-~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD-MKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHT
T ss_pred EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCC-CCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 689999999998887766655
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-50 Score=441.49 Aligned_cols=372 Identities=29% Similarity=0.430 Sum_probs=267.9
Q ss_pred CCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccC
Q 007090 219 DVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (618)
Q Consensus 219 ~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (618)
..|.++..+...++++.+.+.+...|+..|+++|.++++.++++ ++++++++||+|||++|+++++.++... .
T Consensus 113 ~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~ 187 (508)
T 3fho_A 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----V 187 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----C
T ss_pred ccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----C
Confidence 34556667777789999999999999999999999999999998 9999999999999999999999886432 3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
.++++||++||++|+.|+++.+.++....++.+....++..... ...+++|+|+||++|.+.+......+..+++|
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lI 263 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVF 263 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEE
Confidence 36789999999999999999999998777777666665543322 23368999999999999998887788999999
Q ss_pred Eecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcc
Q 007090 377 VLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (618)
Q Consensus 377 IvDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~ 455 (618)
||||||++.+ +++...+..++..+++..|++++|||+++.+..+...++.++..+...........+.+.+........
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 343 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH 343 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHH
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHH
Confidence 9999999987 678899999999999999999999999999999999999999888776666666667777777766666
Q ss_pred cHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCC
Q 007090 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (618)
Q Consensus 456 k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gld 535 (618)
+...+...+... ..+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 344 k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiD 422 (508)
T 3fho_A 344 KYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 422 (508)
T ss_dssp HHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CC
T ss_pred HHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCC
Confidence 777777776543 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEcCCC------CCHHHHHHHHhhcccCCCCCeEEEEEecC-ccHHHHHHHHHHHHHcCCCCCHHH
Q 007090 536 IKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSMEL 601 (618)
Q Consensus 536 i~~v~~VI~~~~p------~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~-~d~~~~~~i~~~l~~~~~~v~~~l 601 (618)
+|++++||+|++| .++..|+||+||+||.| +.|.|++|++. .+...+..+.+.+......++...
T Consensus 423 ip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g-~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 423 VSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG-RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp CTTCCEEEC----CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred ccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC-CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 9999999999999 78999999999999999 67999999985 566777778777766666666443
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-47 Score=410.05 Aligned_cols=327 Identities=22% Similarity=0.289 Sum_probs=269.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHH
Q 007090 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (618)
Q Consensus 236 l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~ 315 (618)
+.+.+.+....+|+|+|.++++.+++++++++++|||+|||++|++|++..+ ..++++|||+||++||.|++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHHH
Confidence 3444444323389999999999999999999999999999999999887765 23788999999999999999
Q ss_pred HHHHHHHhhcCceEEEEECCCCh---HHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhhh------
Q 007090 316 LETKKFAKSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF------ 385 (618)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~------ 385 (618)
+.+.+++. .++++..++|+.+. ..++..+..+ ++|+|+||++|.+.+.. ..+..+++|||||||++.
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999987 78999999999988 5666777776 99999999999888764 567789999999998654
Q ss_pred ----c-CCChHH-HHHHHHhcC-----------CCccEEEEecc-ccHHHH-HHHHHHcCCCeEEEEcCccccccceeEE
Q 007090 386 ----D-LGFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQV 446 (618)
Q Consensus 386 ----~-~~~~~~-i~~i~~~~~-----------~~~q~i~~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~i~q~ 446 (618)
+ ++|... +..++..++ +.+|+++|||| +|..+. .+...++. +.+.........+.+.
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhe
Confidence 3 778888 788888876 88999999999 554443 33444433 2223333444556666
Q ss_pred EEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHHhcCCceEEE
Q 007090 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVLI 525 (618)
Q Consensus 447 ~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~-~l~g~~~~~~r~~~~~~F~~g~~~VLV 525 (618)
+... .+...+...+.. .++++||||+++..++.++..|...|+.+. .+||. +|. ++.|++|+.+|||
T Consensus 235 ~~~~----~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp EESS----CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred eecc----CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 6544 455666666655 257999999999999999999999999998 99984 444 9999999999999
Q ss_pred e----cccccccCCcCC-ccEEEEcCCC--CCHHHHHHHHhhcccCCC---CCeEEEEEecCccHHHHHHHHHHHH
Q 007090 526 A----TDVAARGLDIKS-IKSVVNFDIA--RDMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLI 591 (618)
Q Consensus 526 a----T~~~~~Gldi~~-v~~VI~~~~p--~~~~~y~Qr~GR~gR~g~---~~g~~~~l~~~~d~~~~~~i~~~l~ 591 (618)
| |+++++|+|+|+ |++||+|++| .++..|+||+||+||.|. +.|.|++|+ .+...+..+.+.+.
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9 999999999999 9999999999 999999999999999984 479999999 77788888888777
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.7e-47 Score=413.62 Aligned_cols=342 Identities=19% Similarity=0.333 Sum_probs=278.0
Q ss_pred cCCccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 224 VKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
+.+|+++++++.+.+.+.. .|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.. .+.+|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 3578999999999999998 79999999999999999999999999999999999999998743 35689
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH---HH-HcCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---EL-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIv 378 (618)
||+|+++|+.|+++.+..+ ++.+..+.++........ .+ ...++|+|+||++|........+....+.+|||
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999998876 788888888877654432 22 345899999999996332222334578999999
Q ss_pred cchhhhhcCC--ChHHHHHH--HHhcCCCccEEEEeccccHHHHHHHHHHc--CCCeEEEEcCccccccceeEEEEEcCC
Q 007090 379 DEADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPS 452 (618)
Q Consensus 379 DEah~~~~~~--~~~~i~~i--~~~~~~~~q~i~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~q~~~~~~~ 452 (618)
||||++.+|+ |.+.+..+ +....+..+++++|||+++.+...+...+ .++..+ +.. ....++...+..
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~~r~~l~~~v~~--- 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIRYMLME--- 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--CCCTTEEEEEEE---
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--CCCCceEEEEEe---
Confidence 9999999887 66665533 22233678999999999988765444443 334333 222 222333322222
Q ss_pred CcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 007090 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (618)
Q Consensus 453 ~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 532 (618)
...+...+...+... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 245666777766543 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHH
Q 007090 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 533 Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
|+|+|+|++||+|++|.++..|+||+||+||.| .+|.|+.|+++.|...+..++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g-~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCC-CCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 5799999999998887776654
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.5e-46 Score=410.81 Aligned_cols=377 Identities=22% Similarity=0.252 Sum_probs=284.1
Q ss_pred ccCCCcccCccCCccccCCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHH---HHH-HHCCCCCCcHHHHHHH
Q 007090 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLM---HAI-SKQGYEKPTSIQCQAL 256 (618)
Q Consensus 181 ~~~~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~---~~l-~~~~~~~~~~~Q~~~i 256 (618)
.|.++.+.++...+.+.+++.+++......+...+.... ++.++ +++.+. ++. ...|+ .|+|+|..++
T Consensus 21 ~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~------~ld~~-l~ea~a~vrea~~r~lG~-~pt~VQ~~~i 92 (844)
T 1tf5_A 21 RYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA------TTDDL-LVEAFAVVREASRRVTGM-FPFKVQLMGG 92 (844)
T ss_dssp HHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC------ChHHH-HHHHHHHHHHHHHHHcCC-CCcHHHHHhh
Confidence 455666777777888999999999887777655443211 12221 222211 111 14699 9999999999
Q ss_pred HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCC
Q 007090 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (618)
Q Consensus 257 ~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~ 336 (618)
|.+++|+ |+.++||+|||++|++|++.+.+. ++.++||+|||+||.|+++++..++..+|+++.+++||.
T Consensus 93 p~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~ 162 (844)
T 1tf5_A 93 VALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSM 162 (844)
T ss_dssp HHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTS
T ss_pred HHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCC
Confidence 9999998 999999999999999999866432 567999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHcCCcEEEeChHHH-HHHHHc------cccccCceeEEEecchhhhh-cCC---------------ChHHH
Q 007090 337 SKLDQFKELKAGCEIVIATPGRL-IDMLKM------KALTMSRVTYLVLDEADRMF-DLG---------------FEPQI 393 (618)
Q Consensus 337 ~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~------~~~~l~~~~~iIvDEah~~~-~~~---------------~~~~i 393 (618)
+...+ ....++||+|+||++| .+++.. ....++.+.++||||||+|+ +.+ |...+
T Consensus 163 ~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i 240 (844)
T 1tf5_A 163 SKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA 240 (844)
T ss_dssp CHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHH
T ss_pred CHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHH
Confidence 76543 3345699999999999 566543 23567899999999999998 664 56788
Q ss_pred HHHHHhcC---------CCccEE-----------------EEeccccH---HHHHH--HHHHcC-CCeEEE-------Ec
Q 007090 394 RSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKL--AREILS-DPVRVT-------VG 434 (618)
Q Consensus 394 ~~i~~~~~---------~~~q~i-----------------~~SAT~~~---~~~~l--~~~~~~-~~~~i~-------~~ 434 (618)
..++..++ +.+|++ +||||++. .+... ++.++. +...+. +.
T Consensus 241 ~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivD 320 (844)
T 1tf5_A 241 NAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVD 320 (844)
T ss_dssp HHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBC
T ss_pred HHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEee
Confidence 89999987 378888 99999874 33333 222332 111110 00
Q ss_pred -----------------------------Ccccccccee-----------------------------------------
Q 007090 435 -----------------------------EVGMANEDIT----------------------------------------- 444 (618)
Q Consensus 435 -----------------------------~~~~~~~~i~----------------------------------------- 444 (618)
........|.
T Consensus 321 e~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p 400 (844)
T 1tf5_A 321 SFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP 400 (844)
T ss_dssp TTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSC
T ss_pred cccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCC
Confidence 0000000000
Q ss_pred -----EEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007090 445 -----QVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (618)
Q Consensus 445 -----q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~ 518 (618)
+....+.....|+..+...+.... ...++||||+|+..++.|+..|...|+++.+|||++.+.+|..+...|+.
T Consensus 401 ~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~ 480 (844)
T 1tf5_A 401 VVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK 480 (844)
T ss_dssp CCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST
T ss_pred cccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC
Confidence 000112234567777777765432 34589999999999999999999999999999999988888766655655
Q ss_pred CCceEEEecccccccCCcC--------CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 519 GVYHVLIATDVAARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 519 g~~~VLVaT~~~~~Gldi~--------~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
| .|+|||++|+||+||+ ++.+||+|+.|.+...|+||+||+||.| .+|.+++|++..|.
T Consensus 481 g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG-~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 481 G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG-DPGITQFYLSMEDE 547 (844)
T ss_dssp T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEETTSS
T ss_pred C--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC-CCCeEEEEecHHHH
Confidence 5 6999999999999999 8889999999999999999999999999 68999999998874
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-45 Score=430.55 Aligned_cols=331 Identities=18% Similarity=0.206 Sum_probs=261.2
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~ 305 (618)
.|..++++..+...+...+...|+|+|.++++.+++++++|++++||||||++|++|++..+. .++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEc
Confidence 455555555555555556677899999999999999999999999999999999999998873 367899999
Q ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 306 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
||++|+.|+++.+.+++. .+..+.|+.+. ..+++|+|+||++|.+++......+..+++|||||||+|.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999999864 56777777653 3458999999999999998877778999999999999999
Q ss_pred cCCChHHHHHHHHhcCCCccEEEEeccccHH--HHHHHHHHcCCCeEEEEcCccccccceeEEEEE---------cCCC-
Q 007090 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK--VEKLAREILSDPVRVTVGEVGMANEDITQVVHV---------IPSD- 453 (618)
Q Consensus 386 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~---------~~~~- 453 (618)
++++...+..++..+++..|+++||||+|+. +..++..+...|..+........ .+.+.+.. +...
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999998764 44566666666666554332211 11111110 0000
Q ss_pred --------------------------------------------cccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHH
Q 007090 454 --------------------------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (618)
Q Consensus 454 --------------------------------------------~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~ 489 (618)
..+...++..+... ..+++||||+++..|+.++..
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHH
Confidence 11122233333221 346899999999999999999
Q ss_pred HHhCCCc---------------------------------------EEEEeCCCCHHHHHHHHHHHhcCCceEEEecccc
Q 007090 490 LAQKGFK---------------------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (618)
Q Consensus 490 L~~~~~~---------------------------------------~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~ 530 (618)
|...++. ++.+||++++.+|..++..|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653222 7999999999999999999999999999999999
Q ss_pred cccCCcCCccEEEEcCCC--------CCHHHHHHHHhhcccCC-CCCeEEEEEecCc
Q 007090 531 ARGLDIKSIKSVVNFDIA--------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (618)
Q Consensus 531 ~~Gldi~~v~~VI~~~~p--------~~~~~y~Qr~GR~gR~g-~~~g~~~~l~~~~ 578 (618)
++|||+|++++||+++.| .++..|+||+||+||.| ...|.||+++++.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999977764 36778999999999999 4579999999876
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-44 Score=409.33 Aligned_cols=336 Identities=24% Similarity=0.346 Sum_probs=268.6
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 224 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
..+|.++++++.+.+.+...|+..|+|+|.++++. +.+++++++++|||||||+++.++++.++... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78999999999999999999999999887532 67899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchh
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah 382 (618)
|++|+|+||.|+++.++++ ...++++...+|+....... ..+++|+||||++|..++......++.+++|||||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999654 34588999988887654431 2368999999999999988776668999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeE------------EEEEc
Q 007090 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQ------------VVHVI 450 (618)
Q Consensus 383 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q------------~~~~~ 450 (618)
++.+..+...+..++..++ ..|+|+||||+++ ...++.++ +.+.. .... ....+.. ...+.
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~~-~~~~---r~~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEPV-ATNW---RPVPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEEE-ECCC---CSSCEEEEEEEECSSTTEEEEEET
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCcc-CCCC---CCCCceEEEEecCCcccceeeecC
Confidence 9988888888888888876 8899999999975 35555554 32211 1100 0000111 11111
Q ss_pred CC-------CcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCC-----------------------------
Q 007090 451 PS-------DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG----------------------------- 494 (618)
Q Consensus 451 ~~-------~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~----------------------------- 494 (618)
.. ...+...+...+. ..+++||||+++.+++.++..|....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred cchhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 10 1233444444443 46899999999999999999998642
Q ss_pred -------CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----cC-------CCCCHHHHHH
Q 007090 495 -------FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-------IARDMDMHVH 556 (618)
Q Consensus 495 -------~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~----~~-------~p~~~~~y~Q 556 (618)
..+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.++..|.|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 34899999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred HHhhcccCC-CCCeEEEEEecCccH
Q 007090 557 RIGRTGRAG-DKDGTAYTLVTQKEA 580 (618)
Q Consensus 557 r~GR~gR~g-~~~g~~~~l~~~~d~ 580 (618)
|+||+||.| +..|.||++++..+.
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999998 347999999988763
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.3e-44 Score=401.80 Aligned_cols=330 Identities=20% Similarity=0.218 Sum_probs=207.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
..+|+|+|.++++.+++++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+.+.+++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 45799999999999999999999999999999999999998886643 233678999999999999999999999988
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCChHHHH-HHHHh-c-
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ-I- 400 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~~~~iIvDEah~~~~~~~~~~i~-~i~~~-~- 400 (618)
.++++..++|+.....++..+..+++|+|+||++|.+.+..... .+..+++|||||||++.+++....+. .++.. +
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 89999999999887777777777899999999999999987766 78899999999999998876443332 22221 1
Q ss_pred --CCCccEEEEeccccH-----------HHHHHHHHH------------------cCCCeEEEEcCcccccc--------
Q 007090 401 --RPDRQTLLFSATMPR-----------KVEKLAREI------------------LSDPVRVTVGEVGMANE-------- 441 (618)
Q Consensus 401 --~~~~q~i~~SAT~~~-----------~~~~l~~~~------------------~~~~~~i~~~~~~~~~~-------- 441 (618)
.+..|+++||||++. .+..+...+ ...|.............
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 456899999999953 222222222 11121111100000000
Q ss_pred ----------cee---EEE-------------------------------------------------------------
Q 007090 442 ----------DIT---QVV------------------------------------------------------------- 447 (618)
Q Consensus 442 ----------~i~---q~~------------------------------------------------------------- 447 (618)
.+. ...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000 000
Q ss_pred -------------------------------------------EEcCCCcccHHHHHHhcCCC---CCCCcEEEEcCChh
Q 007090 448 -------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKT 481 (618)
Q Consensus 448 -------------------------------------------~~~~~~~~k~~~l~~~l~~~---~~~~~vLVF~~~~~ 481 (618)
........|...|...|... ...+++||||++..
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 00000134555566665433 24679999999999
Q ss_pred HHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEecccccccCCcCCccEEEEcCCC
Q 007090 482 TVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (618)
Q Consensus 482 ~~~~l~~~L~~~------------~~~~~~l~g~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p 548 (618)
.++.+++.|... |..+..+||++++.+|..+++.|++ |.++|||||+++++|+|+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 5566677888999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 549 ~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
+|+..|+||+|| ||.. .|.||+|+++.+.
T Consensus 482 ~s~~~~~Qr~GR-gR~~--~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRAA--GSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC-----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCCC--CceEEEEEeCcch
Confidence 999999999999 9985 7999999998764
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-44 Score=411.87 Aligned_cols=334 Identities=20% Similarity=0.292 Sum_probs=272.7
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
+|.++++++.+.+.+...|+..|+|+|.++++. +..++++++++|||||||++|.+|++.++... ++++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88999999999999999999999999887632 6789999
Q ss_pred cccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 007090 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~ 384 (618)
+|+++||.|+++.+.++.. .++++..++|+...... ...+++|+||||++|..++......++++++|||||||.+
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976543 58999999987655332 1246899999999999988776666889999999999999
Q ss_pred hcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEE------EEcCC----Cc
Q 007090 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPS----DA 454 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~------~~~~~----~~ 454 (618)
.++.+...+..++..++...|+|+||||+++ ...+..++ +.+. +... .....+...+ .+... ..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EECC---CCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCC---CCCCcceEEEEeCCeeeccccchhhhh
Confidence 9888999999999988878999999999975 34555543 3211 1110 0011111111 11110 23
Q ss_pred ccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC---------------------------------CCcEEEEe
Q 007090 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALH 501 (618)
Q Consensus 455 ~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~---------------------------------~~~~~~l~ 501 (618)
.+...+...+. ..+++||||+++..++.++..|.+. ...+..+|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 34455555543 3689999999999999999999753 12499999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----cC----CCCCHHHHHHHHhhcccCC-CCCeEEE
Q 007090 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (618)
Q Consensus 502 g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~----~~----~p~~~~~y~Qr~GR~gR~g-~~~g~~~ 572 (618)
|++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.++..|.||+||+||.| ...|.||
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 76 5899999999999999998 4579999
Q ss_pred EEecCcc
Q 007090 573 TLVTQKE 579 (618)
Q Consensus 573 ~l~~~~d 579 (618)
++++..+
T Consensus 382 ~l~~~~~ 388 (720)
T 2zj8_A 382 IVSTSDD 388 (720)
T ss_dssp EECSSSC
T ss_pred EEecCcc
Confidence 9999887
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.9e-44 Score=396.11 Aligned_cols=334 Identities=21% Similarity=0.243 Sum_probs=233.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
.+|+|+|.++++.++.+++++++++||+|||++|++|++.++...+ ...++++|||+||++|+.||++.+.+++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999999887653 2336789999999999999999999999888
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCChHHH-HHHHHhc---
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQI-RSIVGQI--- 400 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~~~~iIvDEah~~~~~~~~~~i-~~i~~~~--- 400 (618)
++++..++|+.....++..+..+++|+|+||++|.+.+..... .+..+++|||||||++.+.+....+ ...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999877776677777899999999999999987766 7889999999999999876532222 2333322
Q ss_pred --CCCccEEEEeccccHH-----------HHHHHHHHcCCCeEEEEcCc-c---ccccceeEEEEEcC------------
Q 007090 401 --RPDRQTLLFSATMPRK-----------VEKLAREILSDPVRVTVGEV-G---MANEDITQVVHVIP------------ 451 (618)
Q Consensus 401 --~~~~q~i~~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~~-~---~~~~~i~q~~~~~~------------ 451 (618)
.+..|+++||||++.. +..+... +..+........ . .........+..+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 2567999999999542 1122222 111111110000 0 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007090 452 -------------------------------------------------------------------------------- 451 (618)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (618)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -------------------------------------------------CCcccHHHHHHhcCCC---CCCCcEEEEcCC
Q 007090 452 -------------------------------------------------SDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (618)
Q Consensus 452 -------------------------------------------------~~~~k~~~l~~~l~~~---~~~~~vLVF~~~ 479 (618)
....|...+...|... ...+++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0133555555555432 235799999999
Q ss_pred hhHHHHHHHHHHhCC------------CcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEecccccccCCcCCccEEEEcC
Q 007090 480 KTTVDEIESQLAQKG------------FKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (618)
Q Consensus 480 ~~~~~~l~~~L~~~~------------~~~~~l~g~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~Gldi~~v~~VI~~~ 546 (618)
...++.+++.|...+ .....+||++++.+|..+++.|++ |.++|||||+++++|+|+|+|++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999999863 345556679999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHH
Q 007090 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (618)
Q Consensus 547 ~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i 586 (618)
+|+|+..|+||+|| ||. +.|.|++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA--RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT--TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC--CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 998 47999999998766554433
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.8e-44 Score=410.69 Aligned_cols=334 Identities=22% Similarity=0.324 Sum_probs=265.8
Q ss_pred CccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEE
Q 007090 226 TFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (618)
Q Consensus 226 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLI 303 (618)
+|++++ +++.+.+.+...||..|+|+|.++++.+++++++++++|||||||+++.++++.++.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577788 9999999999999999999999999999999999999999999999999999988653 567999
Q ss_pred EcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 007090 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (618)
Q Consensus 304 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~ 383 (618)
++|+|+||.|+++.++++. ..++++...+|+...... ...+++|+||||++|..++......++.+++|||||||.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996554 358899999888665432 123689999999999999887666688999999999999
Q ss_pred hhcCCChHHHHHHHHhc---CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEE------EEcCCC-
Q 007090 384 MFDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPSD- 453 (618)
Q Consensus 384 ~~~~~~~~~i~~i~~~~---~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~------~~~~~~- 453 (618)
+.++++...+..++..+ ++..|+++||||+++ ...++.++ +.+.. .... ....+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~~-~~~~---r~~~l~~~~~~~~~~~~~~~~~ 223 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADYY-VSDW---RPVPLVEGVLCEGTLELFDGAF 223 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEEE-ECCC---CSSCEEEEEECSSEEEEEETTE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCcc-cCCC---CCccceEEEeeCCeeeccCcch
Confidence 99888888887776665 578999999999985 45555544 33221 1110 011111111 111110
Q ss_pred -----cccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC------------------------------CCcEE
Q 007090 454 -----AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------GFKAA 498 (618)
Q Consensus 454 -----~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~------------------------------~~~~~ 498 (618)
..+...+...+. ..+++||||+++..++.++..|... +..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~ 300 (702)
T 2p6r_A 224 STSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA 300 (702)
T ss_dssp EEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC
T ss_pred hhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE
Confidence 013344444443 4689999999999999999998753 23588
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----cC---CCCCHHHHHHHHhhcccCC-CCCeE
Q 007090 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD---IARDMDMHVHRIGRTGRAG-DKDGT 570 (618)
Q Consensus 499 ~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~----~~---~p~~~~~y~Qr~GR~gR~g-~~~g~ 570 (618)
.+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.++..|.||+||+||.| +..|.
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 380 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGE 380 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 9999999999999999999999999999999999999999999998 66 7899999999999999998 45799
Q ss_pred EEEEecCccH
Q 007090 571 AYTLVTQKEA 580 (618)
Q Consensus 571 ~~~l~~~~d~ 580 (618)
||+++++.+.
T Consensus 381 ~~~l~~~~~~ 390 (702)
T 2p6r_A 381 AIIIVGKRDR 390 (702)
T ss_dssp EEEECCGGGH
T ss_pred EEEEecCccH
Confidence 9999998873
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.4e-44 Score=412.42 Aligned_cols=343 Identities=21% Similarity=0.256 Sum_probs=226.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHH
Q 007090 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (618)
Q Consensus 238 ~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~ 317 (618)
..+...|+..|+|+|.+++++++.++++|+++|||+|||++|++|++.++...+ ...++++|||+||++|+.||.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999999998886543 12346899999999999999999
Q ss_pred HHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCChHHHH-H
Q 007090 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-S 395 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~~~~iIvDEah~~~~~~~~~~i~-~ 395 (618)
+.+++...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+..+++|||||||++.+......+. .
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998788999999999876666666777899999999999999987766 68899999999999987654222222 2
Q ss_pred HHHh-----cCCCccEEEEecccc-------HH-HHHHHHH---------------------HcCCCeEEEEcCccccc-
Q 007090 396 IVGQ-----IRPDRQTLLFSATMP-------RK-VEKLARE---------------------ILSDPVRVTVGEVGMAN- 440 (618)
Q Consensus 396 i~~~-----~~~~~q~i~~SAT~~-------~~-~~~l~~~---------------------~~~~~~~i~~~~~~~~~- 440 (618)
++.. .++..++++||||+. .. ++.+... +...|............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999996 11 2222111 11122211110000000
Q ss_pred --------------------------------------------------------------------------------
Q 007090 441 -------------------------------------------------------------------------------- 440 (618)
Q Consensus 441 -------------------------------------------------------------------------------- 440 (618)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ------------------------------cceeEEEEE---------------cCCCcccHHHHHHhcCCC---CCCCc
Q 007090 441 ------------------------------EDITQVVHV---------------IPSDAEKLPWLLEKLPGM---IDDGD 472 (618)
Q Consensus 441 ------------------------------~~i~q~~~~---------------~~~~~~k~~~l~~~l~~~---~~~~~ 472 (618)
..+.+.+.. ......|...|..++... ...++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 000000000 001234556666665543 24578
Q ss_pred EEEEcCChhHHHHHHHHHHhCC----CcEEEE--------eCCCCHHHHHHHHHHHhc-CCceEEEecccccccCCcCCc
Q 007090 473 VLVFASKKTTVDEIESQLAQKG----FKAAAL--------HGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSI 539 (618)
Q Consensus 473 vLVF~~~~~~~~~l~~~L~~~~----~~~~~l--------~g~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~Gldi~~v 539 (618)
+||||+++..++.+++.|...+ +.+..+ ||++++.+|.++++.|++ |..+|||||+++++|||+|+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 459999999999999998 999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHH
Q 007090 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (618)
Q Consensus 540 ~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i 586 (618)
++||+||+|+|+..|+||+|| ||.. .|.|+.|++..+......+
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~~--~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRAR--GSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SEEEEESCC--CCCC----------C--CCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcCC--CceEEEEecCCCHHHHHHH
Confidence 999999999999999999999 9984 7999999998776444433
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.9e-43 Score=405.77 Aligned_cols=332 Identities=20% Similarity=0.215 Sum_probs=213.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.|+..|+|+|.++++.++.++++|++++||+|||++|++|++.++...+ ...++++|||+||++|+.||++.+.+++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999999999887643 2336789999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCChHHHH-HHHHhc
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQI 400 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~~~~iIvDEah~~~~~~~~~~i~-~i~~~~ 400 (618)
...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+..+++|||||||++...+....+. .++...
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999987777777888899999999999999987766 78899999999999988765333332 222221
Q ss_pred ----CCCccEEEEeccccH-----------HHHHHHHHH------------------cCCCeEEEEcCcccccc------
Q 007090 401 ----RPDRQTLLFSATMPR-----------KVEKLAREI------------------LSDPVRVTVGEVGMANE------ 441 (618)
Q Consensus 401 ----~~~~q~i~~SAT~~~-----------~~~~l~~~~------------------~~~~~~i~~~~~~~~~~------ 441 (618)
.+..|+++||||++. .+..+...+ +..|.............
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 566899999999952 222222221 12221111100000000
Q ss_pred ------------c------eeEE-EEEc----------------------------------------------------
Q 007090 442 ------------D------ITQV-VHVI---------------------------------------------------- 450 (618)
Q Consensus 442 ------------~------i~q~-~~~~---------------------------------------------------- 450 (618)
. +... ...+
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 0000 0000
Q ss_pred ------------------------------------------------CCCcccHHHHHHhcCCC---CCCCcEEEEcCC
Q 007090 451 ------------------------------------------------PSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (618)
Q Consensus 451 ------------------------------------------------~~~~~k~~~l~~~l~~~---~~~~~vLVF~~~ 479 (618)
.....|...|...|... ...+++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 00133555555555432 245799999999
Q ss_pred hhHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEecccccccCCcCCccEEEEcC
Q 007090 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (618)
Q Consensus 480 ~~~~~~l~~~L~~~------------~~~~~~l~g~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~Gldi~~v~~VI~~~ 546 (618)
+..++.++.+|... |..+..+||++++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5667788999999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 547 ~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
+|+|+..|+||+|| ||.. .|.||+|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~~--~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRAA--GSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC----------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCCC--CceEEEEEeCCcH
Confidence 99999999999999 9984 7999999998754
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.1e-42 Score=408.06 Aligned_cols=322 Identities=22% Similarity=0.300 Sum_probs=264.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.|| +|+|+|.++++.+++|++++++++||||||++|+++++..+ ..++++|||+|||+||.|+++.+.+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 466 69999999999999999999999999999998877776665 237889999999999999999999977
Q ss_pred hhcCceEEEEECCCCh---HHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhh----------hhc-C
Q 007090 323 KSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR----------MFD-L 387 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~---~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~----------~~~-~ 387 (618)
..++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||+ |++ +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 668899999999987 6777778776 99999999999888764 5678999999999975 445 8
Q ss_pred CChHH-HHHHHHhcC-----------CCccEEEEecc-ccHHHH-HHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC
Q 007090 388 GFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453 (618)
Q Consensus 388 ~~~~~-i~~i~~~~~-----------~~~q~i~~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~ 453 (618)
+|... +..++..++ +.+|+++|||| .|..+. .+.+.++. +.+.........+.+.+...
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 88888 888988887 88999999999 555443 23444433 33333444555667766554
Q ss_pred cccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHHhcCCceEEEe----cc
Q 007090 454 AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVLIA----TD 528 (618)
Q Consensus 454 ~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~-~l~g~~~~~~r~~~~~~F~~g~~~VLVa----T~ 528 (618)
.+...|..++... ++++||||+++..+..++..|...|+.+. .+|| +|.+ ++.|++|+.+|||| |+
T Consensus 296 -~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 4556666666552 58999999999999999999999999998 9999 2555 99999999999999 99
Q ss_pred cccccCCcCC-ccEEEEcCCCC----------------------------------------------------------
Q 007090 529 VAARGLDIKS-IKSVVNFDIAR---------------------------------------------------------- 549 (618)
Q Consensus 529 ~~~~Gldi~~-v~~VI~~~~p~---------------------------------------------------------- 549 (618)
++++|+|+|+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHHHHHHHHhhcccCCCC-CeEEEEEecCccHHHHHHHHHHHHH
Q 007090 550 --------------DMDMHVHRIGRTGRAGDK-DGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 550 --------------~~~~y~Qr~GR~gR~g~~-~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
++.+|+||+||+||.|.. .+..++++...|...+..|.+.+.-
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 788999999999997621 1134444444888888888888873
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-42 Score=374.23 Aligned_cols=323 Identities=21% Similarity=0.242 Sum_probs=252.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+|+|.+++++++.+ +++++++||+|||++++++++.++. ..++++|||+||++|+.||.+++.+++....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-------cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6999999999999999 9999999999999999999888765 2367799999999999999999999974334
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccE
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~ 406 (618)
.++..+.|+...... ..+..+++|+|+||+.|...+......+..+++|||||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 588888887766543 3344568999999999999988777788899999999999988665556666666666788999
Q ss_pred EEEeccccHH---HHHHHHHHcCCCeEEEEcCcccc-----ccceeEEEEE-----------------------------
Q 007090 407 LLFSATMPRK---VEKLAREILSDPVRVTVGEVGMA-----NEDITQVVHV----------------------------- 449 (618)
Q Consensus 407 i~~SAT~~~~---~~~l~~~~~~~~~~i~~~~~~~~-----~~~i~q~~~~----------------------------- 449 (618)
++||||+... +..++..+...+..+........ ...+......
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999733 33444433222111110000000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007090 450 -------------------------------------------------------------------------------- 449 (618)
Q Consensus 450 -------------------------------------------------------------------------------- 449 (618)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred ------------------cCCCcccHHHHHHhcCCC---CCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC------
Q 007090 450 ------------------IPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG------ 502 (618)
Q Consensus 450 ------------------~~~~~~k~~~l~~~l~~~---~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g------ 502 (618)
......|...+.+.+... ...+++||||++...++.+++.|...|+.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 002234555566666543 24679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 503 --DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 503 --~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
++++.+|..+++.|++|..+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.| .|.+|.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g--~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM--PGRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC--CSEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC--CceEEEEEecCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999 3999999998753
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.9e-43 Score=413.29 Aligned_cols=320 Identities=20% Similarity=0.295 Sum_probs=263.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 242 ~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..||. | |+|.++++.+++|+++++++|||||||+ |.+|++.++.. .++++|||+|||+||.|+++.+.++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 36888 9 9999999999999999999999999998 89999988764 3788999999999999999999999
Q ss_pred HhhcCc----eEEEEECCCChHHH---HHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHH
Q 007090 322 AKSHGI----RVSAVYGGMSKLDQ---FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (618)
Q Consensus 322 ~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~ 394 (618)
+...++ ++..++||.+...+ ...+.. ++|+|+||++|.+.+.. ++.+++|||||||+|++ |...+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999887663 344455 99999999999988754 67899999999999998 567888
Q ss_pred HHHHhc-----------CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHh
Q 007090 395 SIVGQI-----------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (618)
Q Consensus 395 ~i~~~~-----------~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~ 463 (618)
.++..+ +..+|+++||||+++. ..++..++.++..+.+.........+.+.+. ...+...+..+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHHHHHHH
Confidence 887766 3568999999999887 5444445444444444444444555666554 24566666666
Q ss_pred cCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEe----cccccccCCcCCc
Q 007090 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA----TDVAARGLDIKSI 539 (618)
Q Consensus 464 l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVa----T~~~~~Gldi~~v 539 (618)
+... ++++||||+++..++.++..|+.. +.+..+||++. .+++.|++|+.+|||| |+++++|+|+|+|
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 6654 578999999999999999999988 99999999983 7889999999999999 9999999999996
Q ss_pred -cEEEEcCCC----------------------------------------------------------------------
Q 007090 540 -KSVVNFDIA---------------------------------------------------------------------- 548 (618)
Q Consensus 540 -~~VI~~~~p---------------------------------------------------------------------- 548 (618)
++||+||+|
T Consensus 343 I~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 422 (1054)
T 1gku_B 343 IRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVI 422 (1054)
T ss_dssp CCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEE
T ss_pred ccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeeccee
Confidence 999999999
Q ss_pred -CCHHHHHHHHhhcccCCCCCe--EEEEEecCccHHHHHHHHHHHHH
Q 007090 549 -RDMDMHVHRIGRTGRAGDKDG--TAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 549 -~~~~~y~Qr~GR~gR~g~~~g--~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
.++..|+||+||+||.| ..| .+++++...+...+..|.+.+..
T Consensus 423 ~~~~~~yiQr~GRagR~g-~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 423 FPDLRTYIQGSGRTSRLF-AGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EECHHHHHHHHHTTCCEE-TTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cCcHHHHhhhhchhhhcc-CCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987 344 48888888899999999888875
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8.7e-43 Score=384.69 Aligned_cols=364 Identities=19% Similarity=0.234 Sum_probs=246.4
Q ss_pred cccCCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHH---HHHH-HCCCCCCcHHHHHHHHHHhcCCcEEEEeC
Q 007090 195 SISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLM---HAIS-KQGYEKPTSIQCQALPIILSGRDIIGIAK 270 (618)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~---~~l~-~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~ 270 (618)
.+.+++.+++......+..++... .++.++ +++.+. .+.. ..|. .|+|+|..++|.+++|+ |..++
T Consensus 26 ~~~~lsd~eL~~kt~~fk~rl~~g------~~ld~~-lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~ 95 (853)
T 2fsf_A 26 EMEKLSDEELKGKTAEFRARLEKG------EVLENL-IPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMR 95 (853)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHTT------CCHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHcC------CChhhh-hHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eeeec
Confidence 456677777766555554333321 112222 222111 1111 2353 89999999999999998 99999
Q ss_pred CCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCc
Q 007090 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350 (618)
Q Consensus 271 TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~d 350 (618)
||+|||++|++|++.+.+. ++.++||+|||+||.|+++++..++..+++++.+++||.+.. .+.+..+++
T Consensus 96 TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~d 165 (853)
T 2fsf_A 96 TGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAYAAD 165 (853)
T ss_dssp TTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSS
T ss_pred CCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCC
Confidence 9999999999999876532 567999999999999999999999999999999999998764 344555799
Q ss_pred EEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhh-cC---------------CChHHHHHHHHhcCC-----
Q 007090 351 IVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DL---------------GFEPQIRSIVGQIRP----- 402 (618)
Q Consensus 351 Iiv~Tp~~L-~~~l~~~------~~~l~~~~~iIvDEah~~~-~~---------------~~~~~i~~i~~~~~~----- 402 (618)
|+|+||++| .+++..+ ...++.+.++||||||+|+ +. +|...+..++..+++
T Consensus 166 IvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~ 245 (853)
T 2fsf_A 166 ITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKED 245 (853)
T ss_dssp EEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-------------------------
T ss_pred EEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccc
Confidence 999999999 7877643 3567899999999999998 44 356778888888864
Q ss_pred ---------------CccEE------------------------EEeccccHHHHHH-----HHHHcC------------
Q 007090 403 ---------------DRQTL------------------------LFSATMPRKVEKL-----AREILS------------ 426 (618)
Q Consensus 403 ---------------~~q~i------------------------~~SAT~~~~~~~l-----~~~~~~------------ 426 (618)
.+|++ +||||++.-+..+ +..++.
T Consensus 246 ~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~v 325 (853)
T 2fsf_A 246 SETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEV 325 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcE
Confidence 56654 8999976422111 111111
Q ss_pred ---------------------CC----eEEEEcCccccccceeE------------------------------------
Q 007090 427 ---------------------DP----VRVTVGEVGMANEDITQ------------------------------------ 445 (618)
Q Consensus 427 ---------------------~~----~~i~~~~~~~~~~~i~q------------------------------------ 445 (618)
.+ ..+.+.........|.+
T Consensus 326 viVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IP 405 (853)
T 2fsf_A 326 IIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVP 405 (853)
T ss_dssp -------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECC
T ss_pred EEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcC
Confidence 01 11111111111111110
Q ss_pred ----------EEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 007090 446 ----------VVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (618)
Q Consensus 446 ----------~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~ 514 (618)
...++.....|+..+...+.... ...++||||+|+..++.|+..|++.|+++.+|||...+.++..+..
T Consensus 406 tn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~ 485 (853)
T 2fsf_A 406 TNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQ 485 (853)
T ss_dssp CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHT
T ss_pred CCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHh
Confidence 00122344567888887775432 3458999999999999999999999999999999998888888888
Q ss_pred HHhcCCceEEEecccccccCCcCCc-------------------------------------cEEEEcCCCCCHHHHHHH
Q 007090 515 KFKSGVYHVLIATDVAARGLDIKSI-------------------------------------KSVVNFDIARDMDMHVHR 557 (618)
Q Consensus 515 ~F~~g~~~VLVaT~~~~~Gldi~~v-------------------------------------~~VI~~~~p~~~~~y~Qr 557 (618)
.|+.| .|+|||++|+||+||+.. .+||+|+.|.+...|.||
T Consensus 486 agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr 563 (853)
T 2fsf_A 486 AGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQL 563 (853)
T ss_dssp TTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHH
T ss_pred cCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhh
Confidence 88888 699999999999999973 599999999999999999
Q ss_pred HhhcccCCCCCeEEEEEecCccHH
Q 007090 558 IGRTGRAGDKDGTAYTLVTQKEAR 581 (618)
Q Consensus 558 ~GR~gR~g~~~g~~~~l~~~~d~~ 581 (618)
+||+||.| .+|.+++|++..|..
T Consensus 564 ~GRTGRqG-d~G~s~~fls~eD~l 586 (853)
T 2fsf_A 564 RGRSGRQG-DAGSSRFYLSMEDAL 586 (853)
T ss_dssp HTTSSGGG-CCEEEEEEEETTSGG
T ss_pred ccccccCC-CCeeEEEEecccHHH
Confidence 99999999 689999999988743
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-42 Score=402.07 Aligned_cols=332 Identities=20% Similarity=0.215 Sum_probs=212.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.++..|+|+|.++++.++.|++++++++||+|||++|++|++.++...+ ...++++|||+||++|+.||+.++.+++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999988765432 1236789999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcccc-ccCceeEEEecchhhhhcCCChHHHH-HHHHh-
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ- 399 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~l~~~~~iIvDEah~~~~~~~~~~i~-~i~~~- 399 (618)
...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+..+++|||||||++...+....+. .++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999877766666777899999999999999987666 68899999999999988765332322 22222
Q ss_pred ---cCCCccEEEEeccccH-----------HHHHHHH------------------HHcCCCeEEEEcCcccccc------
Q 007090 400 ---IRPDRQTLLFSATMPR-----------KVEKLAR------------------EILSDPVRVTVGEVGMANE------ 441 (618)
Q Consensus 400 ---~~~~~q~i~~SAT~~~-----------~~~~l~~------------------~~~~~~~~i~~~~~~~~~~------ 441 (618)
..+..|+++||||++. .+..+.. .++..|.............
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 1566899999999952 2222222 1222222221110000000
Q ss_pred ------------c------eeEEE-EE-----------------------------------------------------
Q 007090 442 ------------D------ITQVV-HV----------------------------------------------------- 449 (618)
Q Consensus 442 ------------~------i~q~~-~~----------------------------------------------------- 449 (618)
. +.+.. ..
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00000 00
Q ss_pred -----------------------------------------------cCCCcccHHHHHHhcCCC---CCCCcEEEEcCC
Q 007090 450 -----------------------------------------------IPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (618)
Q Consensus 450 -----------------------------------------------~~~~~~k~~~l~~~l~~~---~~~~~vLVF~~~ 479 (618)
......|...|...|... ...+++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 000133455555555443 245799999999
Q ss_pred hhHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCceEEEecccccccCCcCCccEEEEcC
Q 007090 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (618)
Q Consensus 480 ~~~~~~l~~~L~~~------------~~~~~~l~g~~~~~~r~~~~~~F~~-g~~~VLVaT~~~~~Gldi~~v~~VI~~~ 546 (618)
+..++.|+.+|... |..+..+||++++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999986 5666777899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 547 ~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
+|+|+..|+||+|| ||.. .|.++.|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~~--~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRAA--GSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC----------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCCC--CCEEEEEEeCCCH
Confidence 99999999999999 9985 7999999988654
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-41 Score=392.00 Aligned_cols=320 Identities=19% Similarity=0.232 Sum_probs=255.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
+| .|+|+|.++++.+.+++++++++|||+|||++|.++++..+. .++++||++||++|+.|+++.+.+++.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 44 499999999999999999999999999999999998887763 367899999999999999999998864
Q ss_pred hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCC
Q 007090 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (618)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~ 403 (618)
.+..++|+.... .+++|+|+||++|.+++.+....+..+++|||||||+|.++++...+..++..+++.
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 677777776543 358999999999999988777778999999999999999999999999999999999
Q ss_pred ccEEEEeccccHHHH--HHHHHHcCCCeEEEEcCccccccceeEEEEEcC---------CC-------------------
Q 007090 404 RQTLLFSATMPRKVE--KLAREILSDPVRVTVGEVGMANEDITQVVHVIP---------SD------------------- 453 (618)
Q Consensus 404 ~q~i~~SAT~~~~~~--~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~---------~~------------------- 453 (618)
.|+++||||+++..+ .++....+.+..+....... ..+.+.+.... ..
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI 301 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhh
Confidence 999999999987532 33333445566555433221 12222222110 00
Q ss_pred --------------------------cccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCc-----------
Q 007090 454 --------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK----------- 496 (618)
Q Consensus 454 --------------------------~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~----------- 496 (618)
...+..++..+... ..+++||||+++..++.++..|...++.
T Consensus 302 ~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 380 (1010)
T 2xgj_A 302 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 380 (1010)
T ss_dssp ---------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 11122233333221 2358999999999999999999765442
Q ss_pred ----------------------------EEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----
Q 007090 497 ----------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN---- 544 (618)
Q Consensus 497 ----------------------------~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~---- 544 (618)
++.+||++++.+|..++..|++|.++|||||+++++|+|+|++++||+
T Consensus 381 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~k 460 (1010)
T 2xgj_A 381 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 460 (1010)
T ss_dssp HHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEE
T ss_pred HHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcc
Confidence 889999999999999999999999999999999999999999999999
Q ss_pred cCC----CCCHHHHHHHHhhcccCCC-CCeEEEEEecCc-cHHHHHHH
Q 007090 545 FDI----ARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK-EARFAGEL 586 (618)
Q Consensus 545 ~~~----p~~~~~y~Qr~GR~gR~g~-~~g~~~~l~~~~-d~~~~~~i 586 (618)
||. |.++..|+||+||+||.|. ..|.|++++++. +...+.++
T Consensus 461 fd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 461 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp ECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred cCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 8999999999999999993 369999999875 44444443
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5e-41 Score=370.87 Aligned_cols=336 Identities=19% Similarity=0.245 Sum_probs=261.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.|+ .|+++|..++|.+++|+ |+.++||+|||++|++|++.+.+. ++.++||+||++||.|+++++..++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 577 99999999999999998 999999999999999999766542 5679999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHcc------ccccCceeEEEecchhhhh-c--------
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-D-------- 386 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~------~~~l~~~~~iIvDEah~~~-~-------- 386 (618)
..+|+++.+++||.+.... ....++||+|+||++| .+++..+ ...++.+.++||||||+|+ +
T Consensus 177 ~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred hhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 9999999999999875433 3344699999999999 6777543 4567889999999999998 3
Q ss_pred -------CCChHHHHHHHHhcC---------CCccEE-----------------EEeccccH---HHHHHH--HHHcC-C
Q 007090 387 -------LGFEPQIRSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKLA--REILS-D 427 (618)
Q Consensus 387 -------~~~~~~i~~i~~~~~---------~~~q~i-----------------~~SAT~~~---~~~~l~--~~~~~-~ 427 (618)
++|...+..++..++ +.+|++ +||||++. .+...+ ..++. +
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d 334 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRD 334 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBT
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcc
Confidence 247788999999997 678998 99999864 333322 22222 1
Q ss_pred -------CeEEEEcC-----------------------------cccccccee---------------------------
Q 007090 428 -------PVRVTVGE-----------------------------VGMANEDIT--------------------------- 444 (618)
Q Consensus 428 -------~~~i~~~~-----------------------------~~~~~~~i~--------------------------- 444 (618)
...+.+.. .......|.
T Consensus 335 ~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~ 414 (922)
T 1nkt_A 335 KDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHE 414 (922)
T ss_dssp TTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred cceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHH
Confidence 11111110 000000011
Q ss_pred -------------------EEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCC
Q 007090 445 -------------------QVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (618)
Q Consensus 445 -------------------q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~ 504 (618)
+...++.....|+..+...+.... ...++||||+|+..++.|+..|.+.|+++.+|||..
T Consensus 415 iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~ 494 (922)
T 1nkt_A 415 IYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY 494 (922)
T ss_dssp HHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred HhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCCh
Confidence 011122344568888887775432 245899999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCceEEEecccccccCCcCCc---------------------------------------------
Q 007090 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------------------------- 539 (618)
Q Consensus 505 ~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v--------------------------------------------- 539 (618)
.+.++..+...|+.| .|+|||++++||+||+.+
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 887777777788877 699999999999999975
Q ss_pred -------cEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHH----HHHHHHHHHcC
Q 007090 540 -------KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAAG 594 (618)
Q Consensus 540 -------~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~----~~i~~~l~~~~ 594 (618)
.+||+|+.|.+...|.||+||+||.| .+|.+++|++..|..+. .++...+...+
T Consensus 573 ~V~~~GGlhVI~te~pes~riy~qr~GRTGRqG-dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 573 EVIEAGGLYVLGTERHESRRIDNQLRGRSGRQG-DPGESRFYLSLGDELMRRFNGAALETLLTRLN 637 (922)
T ss_dssp HHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGG-CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEeccCCCCHHHHHHHhcccccCC-CCeeEEEEechhHHHHHHhhhHHHHHHHHHhC
Confidence 59999999999999999999999999 68999999999876442 44545555443
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=391.57 Aligned_cols=325 Identities=23% Similarity=0.293 Sum_probs=227.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHH-HHHHHHHHhh
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLETKKFAKS 324 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~-~~~~~~~~~~ 324 (618)
..|+|+|.++++.++.++++|+++|||+|||++|++|++.++...+. ...++++|||+||++|+.|| ++++.+++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999988754321 12347799999999999999 9999999864
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHH------HccccccCceeEEEecchhhhhcCCChHHHH-HHH
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML------KMKALTMSRVTYLVLDEADRMFDLGFEPQIR-SIV 397 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l------~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~-~i~ 397 (618)
++++..++|+.........+..+++|+|+||++|.+.+ ....+.+..+++|||||||++....+...+. .++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 48999999988776666667778999999999999888 3445678899999999999986544333333 222
Q ss_pred Hh----cC---------CCccEEEEeccccHH-----------HHHHHHHHcCCCeEEEEcCccc---cccceeEEEEEc
Q 007090 398 GQ----IR---------PDRQTLLFSATMPRK-----------VEKLAREILSDPVRVTVGEVGM---ANEDITQVVHVI 450 (618)
Q Consensus 398 ~~----~~---------~~~q~i~~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~~~~---~~~~i~q~~~~~ 450 (618)
.. .. +..|+++||||++.. +..+...+....+......... ........+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 11 677999999999862 2222222211000000000000 000000000000
Q ss_pred CC------------------------------------------------------------------------------
Q 007090 451 PS------------------------------------------------------------------------------ 452 (618)
Q Consensus 451 ~~------------------------------------------------------------------------------ 452 (618)
..
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------CcccHHHHHHhcCCCC---C-CCc
Q 007090 453 --------------------------------------------------------DAEKLPWLLEKLPGMI---D-DGD 472 (618)
Q Consensus 453 --------------------------------------------------------~~~k~~~l~~~l~~~~---~-~~~ 472 (618)
...|...|...|.... . .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 1122222222222211 1 679
Q ss_pred EEEEcCChhHHHHHHHHHHhC------CCcEEEEeCC--------CCHHHHHHHHHHHhcCCceEEEecccccccCCcCC
Q 007090 473 VLVFASKKTTVDEIESQLAQK------GFKAAALHGD--------KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (618)
Q Consensus 473 vLVF~~~~~~~~~l~~~L~~~------~~~~~~l~g~--------~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~ 538 (618)
+||||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|..+|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecC
Q 007090 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (618)
Q Consensus 539 v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~ 577 (618)
|++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEe
Confidence 999999999999999999999976644 44555544
No 36
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.4e-39 Score=321.92 Aligned_cols=239 Identities=47% Similarity=0.832 Sum_probs=222.9
Q ss_pred CCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHH
Q 007090 198 GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTA 277 (618)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~ 277 (618)
.++.+++..++....+.+.|...|.|+.+|.++++++.+++.+.+.||..|+|+|.++++.+++|+++++++|||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChH
Q 007090 278 AFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (618)
Q Consensus 278 ~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~ 357 (618)
+|++|++.++...+......++++||++|||+|+.|+++.+.+++...++++..++||.....+...+..+++|+|+||+
T Consensus 82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 161 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 161 (242)
T ss_dssp HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence 99999999998766555567899999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCc
Q 007090 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (618)
Q Consensus 358 ~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 436 (618)
+|.+++......+.++++|||||||++.+++|...+..++..+++.+|+++||||+|+.+..+++.++.+|+.+.++..
T Consensus 162 ~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 162 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999998888889999999999999999999999999999999999999999999999999999999999999988753
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.2e-40 Score=382.47 Aligned_cols=317 Identities=20% Similarity=0.218 Sum_probs=249.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.|+|+|.++++.+++|+++++++|||+|||++|+++++..+. .++++||++||++|+.|+++.+.++.. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 589999999999999999999999999999999988877642 367899999999999999999998754 6
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccE
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~ 406 (618)
+++..++|+.... ..++|+|+||++|.+.+......+..+++|||||||++.++++...+..++..+++..|+
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7888888887543 348999999999999988777778999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHcC---CCeEEEEcCccccccceeEEE------------------------------------
Q 007090 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVV------------------------------------ 447 (618)
Q Consensus 407 i~~SAT~~~~~~~l~~~~~~---~~~~i~~~~~~~~~~~i~q~~------------------------------------ 447 (618)
|+||||+++.. .++.++.. .++.+...... ...+.+.+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 99999998653 45444431 22222211100 00011000
Q ss_pred --------------------------------------------------------EEcCCCcccHHHHHHhcCCCCCCC
Q 007090 448 --------------------------------------------------------HVIPSDAEKLPWLLEKLPGMIDDG 471 (618)
Q Consensus 448 --------------------------------------------------------~~~~~~~~k~~~l~~~l~~~~~~~ 471 (618)
........++..++..+... ..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~ 337 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELL 337 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCC
Confidence 00001122344555555432 346
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCC---------------------------------------cEEEEeCCCCHHHHHHH
Q 007090 472 DVLVFASKKTTVDEIESQLAQKGF---------------------------------------KAAALHGDKDQASRMEI 512 (618)
Q Consensus 472 ~vLVF~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~l~g~~~~~~r~~~ 512 (618)
++||||+++..|+.++..|...++ .+..+||++++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999977655 57999999999999999
Q ss_pred HHHHhcCCceEEEecccccccCCcCCccEEEEcCCCC---------CHHHHHHHHhhcccCC-CCCeEEEEEec--CccH
Q 007090 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR---------DMDMHVHRIGRTGRAG-DKDGTAYTLVT--QKEA 580 (618)
Q Consensus 513 ~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~---------~~~~y~Qr~GR~gR~g-~~~g~~~~l~~--~~d~ 580 (618)
+..|+.|.++|||||+++++|+|+|+ ..||+++.|. ++..|+||+||+||.| +..|.|+.++. ..+.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~ 496 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSI 496 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCH
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchH
Confidence 99999999999999999999999999 7777766665 9999999999999998 55799999984 2344
Q ss_pred HHHHH
Q 007090 581 RFAGE 585 (618)
Q Consensus 581 ~~~~~ 585 (618)
..+..
T Consensus 497 ~~~~~ 501 (997)
T 4a4z_A 497 ATFKE 501 (997)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-40 Score=374.48 Aligned_cols=321 Identities=20% Similarity=0.261 Sum_probs=241.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccH
Q 007090 235 QLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (618)
Q Consensus 235 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr 308 (618)
.+...+...+| .||++|.++++.++++ .+++++++||||||++|++|++..+.. ++++||++||+
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr 427 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcH
Confidence 34445567788 8999999999998875 599999999999999999999988742 67899999999
Q ss_pred HHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---HHHHHcC-CcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 007090 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (618)
Q Consensus 309 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~ 384 (618)
+||.|+++.+.+++...++++..++|+.+.... +..+..| ++|+|+||+.|.+ ...+.++++|||||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 999999999999998889999999999876653 3445554 9999999987744 446789999999999995
Q ss_pred hcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhc
Q 007090 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (618)
Q Consensus 385 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l 464 (618)
.... ...+.......|+++||||+.+.... ..++++.....+.........+...+ + ...+...+...+
T Consensus 503 g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~--~--~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 GVKQ-----REALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTML--V--PMDRVNEVYEFV 571 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECC--C--CSSTHHHHHHHH
T ss_pred hHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEE--e--ccchHHHHHHHH
Confidence 3211 12222233568999999998765433 33344332222222221122222211 1 223344444444
Q ss_pred CCCC-CCCcEEEEcCChh--------HHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 007090 465 PGMI-DDGDVLVFASKKT--------TVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (618)
Q Consensus 465 ~~~~-~~~~vLVF~~~~~--------~~~~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~ 532 (618)
.... ..++++|||++.. .+..+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 3322 3568999999664 47888888887 4788999999999999999999999999999999999999
Q ss_pred cCCcCCccEEEEcCCCC-CHHHHHHHHhhcccCCCCCeEEEEEecCccHH
Q 007090 533 GLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (618)
Q Consensus 533 Gldi~~v~~VI~~~~p~-~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~ 581 (618)
|+|+|++++||++++|. +...|.||+||+||.| +.|.|++++++.+..
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g-~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG-QEAYCFLVVGDVGEE 700 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS-TTCEEECCCCSCCHH
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC-CCCEEEEEECCCChH
Confidence 99999999999999996 7899999999999998 579999999854433
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.2e-39 Score=378.16 Aligned_cols=324 Identities=18% Similarity=0.227 Sum_probs=255.2
Q ss_pred cCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhc----CC--cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 230 CGFSTQLMHAISKQ-GYEKPTSIQCQALPIILS----GR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 230 ~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~----~~--dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
++++..+.+.+... +| .|||+|.++++.++. ++ +++++++||+|||++++++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 35666777766544 55 579999999999886 65 9999999999999999988887653 367899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---HHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEEe
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIv 378 (618)
|++||++||.||++.+.+++...++++..+.++...... +..+.. .++|+|+||+.|. ....+.++++|||
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999999888778888888887665543 334444 4999999997653 3456889999999
Q ss_pred cchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHH
Q 007090 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (618)
Q Consensus 379 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (618)
||||++ ......++..+++..++++||||+++....++...+.++..+ .........+.+.+.... ......
T Consensus 732 DEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~-~~~i~~ 803 (1151)
T 2eyq_A 732 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYD-SMVVRE 803 (1151)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECC-HHHHHH
T ss_pred echHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCC-HHHHHH
Confidence 999993 445566777778889999999999877666655554443222 121222223444333322 111222
Q ss_pred HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCc
Q 007090 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (618)
Q Consensus 459 ~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi 536 (618)
.+...+ ..+++++|||++...++.+++.|++. ++.+..+||+|++.+|.+++..|++|+.+|||||+++++|+|+
T Consensus 804 ~il~~l---~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 804 AILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHH---TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 333333 24689999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCC-CCCHHHHHHHHhhcccCCCCCeEEEEEecCcc
Q 007090 537 KSIKSVVNFDI-ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (618)
Q Consensus 537 ~~v~~VI~~~~-p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d 579 (618)
|++++||+++. ++++..|.||+||+||.| +.|.||.++.+.+
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g-~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYAWLLTPHPK 923 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTT-BCEEEEEEECCGG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCC-CceEEEEEECCcc
Confidence 99999999998 579999999999999999 5799999987653
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.4e-39 Score=388.73 Aligned_cols=344 Identities=15% Similarity=0.204 Sum_probs=263.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHH
Q 007090 232 FSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~L 310 (618)
|.....+.+...+|..++|+|.++++.++. +++++++||||||||++|.+|++.++... ++.++||++|||+|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 556677777778899999999999999975 56899999999999999999999998754 36679999999999
Q ss_pred HHHHHHHHHH-HHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhcC
Q 007090 311 AHQIYLETKK-FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDL 387 (618)
Q Consensus 311 a~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~~~~iIvDEah~~~~~ 387 (618)
|.|.+..+.+ |....++++..++|+..... + ...+++|+||||+++..++++ ....++++++|||||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--K-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--H-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch--h-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999999876 45557899988888754322 2 334589999999999877754 2335788999999999988764
Q ss_pred CChHHHHHHHHh-------cCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCccc----
Q 007090 388 GFEPQIRSIVGQ-------IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK---- 456 (618)
Q Consensus 388 ~~~~~i~~i~~~-------~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k---- 456 (618)
.+..+..++.. +++..|+|+||||+++ ...++.++...+..+...........+...+..+......
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 56555555443 4577899999999985 4677777755543333333333333444444433322211
Q ss_pred --HHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC----------------------------------CCcEEEE
Q 007090 457 --LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------------------------GFKAAAL 500 (618)
Q Consensus 457 --~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~l 500 (618)
...+...+......+++||||+++..|+.++..|... ...++.+
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 1122333334445679999999999999888776431 2358999
Q ss_pred eCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----cC------CCCCHHHHHHHHhhcccCC-CCCe
Q 007090 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD------IARDMDMHVHRIGRTGRAG-DKDG 569 (618)
Q Consensus 501 ~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~----~~------~p~~~~~y~Qr~GR~gR~g-~~~g 569 (618)
||+|++.+|..+.+.|++|.++|||||+++++|+|+|.+..||. |+ .|.++.+|+||+|||||.| +..|
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G 1299 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG 1299 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCce
Confidence 99999999999999999999999999999999999999888883 32 3568999999999999999 4579
Q ss_pred EEEEEecCccHHHHHHH
Q 007090 570 TAYTLVTQKEARFAGEL 586 (618)
Q Consensus 570 ~~~~l~~~~d~~~~~~i 586 (618)
.|+.++.+.+..+...+
T Consensus 1300 ~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1300 RCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEGGGHHHHHHH
T ss_pred EEEEEecchHHHHHHHH
Confidence 99999998887776655
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.9e-41 Score=372.21 Aligned_cols=324 Identities=15% Similarity=0.159 Sum_probs=241.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHH
Q 007090 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (618)
Q Consensus 231 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~L 310 (618)
++++.+++.+... ...++|+|+++++.++++++++++++||||||++|++|++.++.. .++++||++|||+|
T Consensus 156 ~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~PtreL 227 (618)
T 2whx_A 156 TKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRVV 227 (618)
T ss_dssp ------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHH
T ss_pred cchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHHH
Confidence 3455544444332 367889988889999999999999999999999999999998865 36789999999999
Q ss_pred HHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCCh
Q 007090 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390 (618)
Q Consensus 311 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~ 390 (618)
|.|+++.+. +..+.+..+.... ....+..+.++|.+.|...+... ..+.++++|||||||++ +.++.
T Consensus 228 a~Qi~~~l~------~~~v~~~~~~l~~-----~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 228 AAEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHHTT------TSCEEECCTTSSC-----CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHHhc------CCceeEeccccee-----ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHH
Confidence 999987765 3333321111000 01124567788888888766444 45889999999999997 56677
Q ss_pred HHHHHHHHhcC-CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC
Q 007090 391 PQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (618)
Q Consensus 391 ~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~ 469 (618)
..+..++..++ +.+|+++||||++..+..++. .++..+.+... ++ ..++..++..+.. .
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~--~~~~~~ll~~l~~--~ 354 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IP--ERSWNTGFDWITD--Y 354 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CC--SSCCSSSCHHHHH--C
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CC--HHHHHHHHHHHHh--C
Confidence 77777777764 789999999999876433222 12322222110 11 1111111222222 2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEE-------
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV------- 542 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~V------- 542 (618)
.+++||||+++..++.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++|+|++ +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 6799999999999999999999999999999984 688899999999999999999999999997 9988
Q ss_pred -------------EEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEec---CccHHHHHHHHHHHHHcCCCCCHH
Q 007090 543 -------------VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT---QKEARFAGELVNSLIAAGQNVSME 600 (618)
Q Consensus 543 -------------I~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~---~~d~~~~~~i~~~l~~~~~~v~~~ 600 (618)
|+|+.|.+...|+||+||+||.|.+.|.|++|++ +.+...+..+...+...+..++..
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTC
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcc
Confidence 7778899999999999999999866899999998 788888888888777766666543
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5e-40 Score=361.08 Aligned_cols=311 Identities=17% Similarity=0.159 Sum_probs=234.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+|+|.++++.++.+++++++++||+|||++++++++..+.. .++++|||+||++|+.||++++.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 47999999999999999999999999999999999988877642 24589999999999999999999986555
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q 405 (618)
+..+..+.|+.....+ +..+++|+|+||+.|... ....+..+++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888888766544 445789999999976542 334577899999999999764 567788888888899
Q ss_pred EEEEeccccHHHHHHHH--HHcCCCeEEEEcCcc------ccccceeEEEEEcC--------------------CCcccH
Q 007090 406 TLLFSATMPRKVEKLAR--EILSDPVRVTVGEVG------MANEDITQVVHVIP--------------------SDAEKL 457 (618)
Q Consensus 406 ~i~~SAT~~~~~~~l~~--~~~~~~~~i~~~~~~------~~~~~i~q~~~~~~--------------------~~~~k~ 457 (618)
+++||||+++....+.. .+++ +....+.... .....+........ ....+.
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 99999999766422211 1222 2222111110 01111111111111 011122
Q ss_pred HHHHHhcCCCC-CCC-cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec-ccccccC
Q 007090 458 PWLLEKLPGMI-DDG-DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGL 534 (618)
Q Consensus 458 ~~l~~~l~~~~-~~~-~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT-~~~~~Gl 534 (618)
..+...+.... ..+ ++||||+ ...+..+++.|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 23333333222 223 5566666 899999999999988899999999999999999999999999999999 9999999
Q ss_pred CcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEec
Q 007090 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (618)
Q Consensus 535 di~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~ 576 (618)
|+|++++||++++|+++..|.||+||+||.|+ .+.++++++
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~-~~~~v~i~~ 453 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG-SKTIATVWD 453 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTTTC-CCCCCEEEE
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhcccccCC-CCceEEEEE
Confidence 99999999999999999999999999999994 343444444
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3e-38 Score=382.80 Aligned_cols=338 Identities=19% Similarity=0.264 Sum_probs=258.5
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCcc---ccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 244 GYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL---QKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~-~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~---~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
||..|+++|.+++|.++ ++++++++||||||||+++.++++..+...... ...++.++|+++|+|+||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999887 578999999999999999999999998764322 23457899999999999999999999
Q ss_pred HHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc--ccccCceeEEEecchhhhhcCCChHHHHHHH
Q 007090 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (618)
Q Consensus 320 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~ 397 (618)
+.+...|++|...+|+...... ...+++|+||||+++..++.+. ...++.+.+|||||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9888889999999998764332 1346899999999987666442 22478899999999997654 5566665554
Q ss_pred H-------hcCCCccEEEEeccccHHHHHHHHHHcCCCe-EEEEcCccccccceeEEEEEcCCCc--cc----HHHHHHh
Q 007090 398 G-------QIRPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDA--EK----LPWLLEK 463 (618)
Q Consensus 398 ~-------~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~q~~~~~~~~~--~k----~~~l~~~ 463 (618)
. .+++..|+|++|||+|+ .+.++.++..++. .+........+..+.+.+..+.... .+ ...+...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 3 35678899999999985 5667766544321 1112222222333444443332211 11 1223444
Q ss_pred cCCCCCCCcEEEEcCChhHHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCH
Q 007090 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHGDKDQ 506 (618)
Q Consensus 464 l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~l~g~~~~ 506 (618)
+.....++++||||+++..++.+++.|.+. ...++.+||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 555556779999999999999998888641 2358999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----cCC------CCCHHHHHHHHhhcccCC-CCCeEEEEEe
Q 007090 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FDI------ARDMDMHVHRIGRTGRAG-DKDGTAYTLV 575 (618)
Q Consensus 507 ~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~----~~~------p~~~~~y~Qr~GR~gR~g-~~~g~~~~l~ 575 (618)
.+|..+.+.|++|.++|||||+++++|+|+|.++.||. |++ |.++.+|.||+|||||.| +..|.++.+.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999888884 543 458999999999999998 5579999999
Q ss_pred cCccHHHHHHH
Q 007090 576 TQKEARFAGEL 586 (618)
Q Consensus 576 ~~~d~~~~~~i 586 (618)
+..+......+
T Consensus 471 ~~~~~~~~~~l 481 (1724)
T 4f92_B 471 SHGELQYYLSL 481 (1724)
T ss_dssp ESTTCCHHHHH
T ss_pred cchhHHHHHHH
Confidence 98876655444
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=6.3e-40 Score=353.37 Aligned_cols=312 Identities=15% Similarity=0.150 Sum_probs=225.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 244 GYEKPTSIQCQALPIILSGRDI-IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dv-l~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++.++.. .++++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 5678999986 79999999887 889999999999999999988764 36789999999999999988764
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHH-hcC
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG-QIR 401 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~-~~~ 401 (618)
++.+......... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +..+...+..+.. ...
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 4444332222211 11234679999999998877544 45889999999999976 3322222222222 245
Q ss_pred CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChh
Q 007090 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~ 481 (618)
+.+|+++||||+++.+..+ +..++..+.+...-. .. .-......+.. ..+++||||+++.
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p-~~----------~~~~~~~~l~~------~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP-ER----------SWNTGFDWITD------YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC-SS----------CCSSSCHHHHH------CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccCC-ch----------hhHHHHHHHHh------CCCCEEEEcCCHH
Confidence 6899999999998643221 223333333221000 00 00112222222 2579999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcC---------------
Q 007090 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD--------------- 546 (618)
Q Consensus 482 ~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~--------------- 546 (618)
.++.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+|+
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHHhhcccCCCCCeEEEEEecCcc---HHHHHHHHHHHHHcCCCCCHHH
Q 007090 547 -----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE---ARFAGELVNSLIAAGQNVSMEL 601 (618)
Q Consensus 547 -----~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d---~~~~~~i~~~l~~~~~~v~~~l 601 (618)
.|.++..|+||+||+||.|...|.|+.|+...+ ......+...+...+..+|..+
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 999999999999999999954788988875432 2222222333445566666544
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.4e-38 Score=359.88 Aligned_cols=338 Identities=19% Similarity=0.233 Sum_probs=248.4
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
+.++.+|.++++++.+.+.+...+ ..|+++|+++++.++. +++++++|+||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 457789999999999999998887 7899999999988774 5689999999999998 46666332221 122367
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHh-hcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 007090 300 IGVICAPTRELAHQIYLETKKFAK-SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIv 378 (618)
.++|++|||+||.|++..+..... ..+..+......... ...+++|+++||+.+.+.+... ..+..+++|||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIl 214 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIIL 214 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEe
Confidence 799999999999999877655432 112223222221111 1235899999999999887654 45889999999
Q ss_pred cchhh-hhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccH
Q 007090 379 DEADR-MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (618)
Q Consensus 379 DEah~-~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 457 (618)
||+|. +++..+...+...+...++..|+++||||++. ..+. .++.++..+.+... ...+.+.+..... ....
T Consensus 215 DEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~-~~~~ 287 (773)
T 2xau_A 215 DEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQ-RDYL 287 (773)
T ss_dssp CSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC---CCCEEEECCSSCC-SCHH
T ss_pred cCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHH-HHhcCCCcccccCc---ccceEEEEecCCc-hhHH
Confidence 99995 66544333333333344578999999999964 3344 45554433443322 1234443332222 2222
Q ss_pred HHHHHhcCC---CCCCCcEEEEcCChhHHHHHHHHHHh-----------CCCcEEEEeCCCCHHHHHHHHHHHh-----c
Q 007090 458 PWLLEKLPG---MIDDGDVLVFASKKTTVDEIESQLAQ-----------KGFKAAALHGDKDQASRMEILQKFK-----S 518 (618)
Q Consensus 458 ~~l~~~l~~---~~~~~~vLVF~~~~~~~~~l~~~L~~-----------~~~~~~~l~g~~~~~~r~~~~~~F~-----~ 518 (618)
...+..+.. ....+++||||+++.+++.++..|.. .++.+..+||++++.+|.++++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 222222211 12468999999999999999999985 5788999999999999999999999 9
Q ss_pred CCceEEEecccccccCCcCCccEEEEcCC------------------CCCHHHHHHHHhhcccCCCCCeEEEEEecCccH
Q 007090 519 GVYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (618)
Q Consensus 519 g~~~VLVaT~~~~~Gldi~~v~~VI~~~~------------------p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~ 580 (618)
|..+|||||+++++|+|||+|++||+++. |.+...|+||+||+||.+ +|.||+|+++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~--~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR--PGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSS--SEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCC--CCEEEEEecHHHh
Confidence 99999999999999999999999999887 889999999999999995 8999999987654
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.8e-39 Score=348.23 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=203.3
Q ss_pred HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCC
Q 007090 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (618)
Q Consensus 258 ~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 337 (618)
++++|++++++++||||||++|++|++.++.. +++++||++||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce
Confidence 35789999999999999999999999988754 3678999999999999998887643 2322211110
Q ss_pred hHHHHHHHHcCCcEEEeChHHHHHHHHc--------cccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCCccEEE
Q 007090 338 KLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLL 408 (618)
Q Consensus 338 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~--------~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~ 408 (618)
+++||+++.+.+.. ....+.++++|||||||++ +.++...+..+...+ ++.+|+++
T Consensus 71 --------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 71 --------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp --------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred --------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 26666555432221 2234789999999999997 222222222222222 46799999
Q ss_pred EeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCC--cccHHHHHHhcCCCCCCCcEEEEcCChhHHHHH
Q 007090 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD--AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEI 486 (618)
Q Consensus 409 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~--~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l 486 (618)
||||+++.+..++.. ..++ ......+... ...+..+.+ ..+++||||+++..++.+
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~l~~------~~~~~lVF~~s~~~a~~l 193 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEI--------------EDVQTDIPSEPWNTGHDWILA------DKRPTAWFLPSIRAANVM 193 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCE--------------EEEECCCCSSCCSSSCHHHHH------CCSCEEEECSCHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCe--------------eEeeeccChHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHH
Confidence 999998764322211 0111 1111111111 112222222 257999999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE-------------------cCC
Q 007090 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------------------FDI 547 (618)
Q Consensus 487 ~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~-------------------~~~ 547 (618)
++.|+..++.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ |+.
T Consensus 194 ~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~ 268 (440)
T 1yks_A 194 AASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL 268 (440)
T ss_dssp HHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc
Confidence 9999999999999999 4688999999999999999999999999999 999996 889
Q ss_pred CCCHHHHHHHHhhcccCCCCCeEEEEEe---cCccHHHHHHHHHHHHHcCCCCCHH
Q 007090 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSLIAAGQNVSME 600 (618)
Q Consensus 548 p~~~~~y~Qr~GR~gR~g~~~g~~~~l~---~~~d~~~~~~i~~~l~~~~~~v~~~ 600 (618)
|.++..|+||+||+||.|.+.|.|++|+ ++.+...+..+...+.....+++..
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 9999999999999999854689999996 6778888888888777776666543
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1e-37 Score=339.32 Aligned_cols=295 Identities=21% Similarity=0.235 Sum_probs=221.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+|+|.++++.++.+++++++++||+|||++|++++... +.++||||||++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999998887654 466999999999999999998884
Q ss_pred Cce-EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 326 ~~~-~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
++. +..+.|+... .++|+|+||+.+...+.. ....+++|||||||++.+..+.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 777 7777776543 479999999998876542 12468999999999998877653 34444 567
Q ss_pred cEEEEeccccHH-------------------HHHHHHHHcCCCeE--EEEcCccc------------------------c
Q 007090 405 QTLLFSATMPRK-------------------VEKLAREILSDPVR--VTVGEVGM------------------------A 439 (618)
Q Consensus 405 q~i~~SAT~~~~-------------------~~~l~~~~~~~~~~--i~~~~~~~------------------------~ 439 (618)
+++++|||+.+. ...+...++..+.. +.+..... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 899999999731 12221111221111 11100000 0
Q ss_pred ccceeEEEE--------------------EcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEE
Q 007090 440 NEDITQVVH--------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (618)
Q Consensus 440 ~~~i~q~~~--------------------~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~ 499 (618)
...+.+.+. .......|...+.+.+.. ...+++||||++...++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 000122345556666654 346799999999999999999883 567
Q ss_pred EeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCC--CeEEEEEecC
Q 007090 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK--DGTAYTLVTQ 577 (618)
Q Consensus 500 l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~--~g~~~~l~~~ 577 (618)
+||++++.+|.++++.|++|..+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+. ...+|.|++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999943 4567778876
Q ss_pred c
Q 007090 578 K 578 (618)
Q Consensus 578 ~ 578 (618)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 4
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-38 Score=347.24 Aligned_cols=278 Identities=23% Similarity=0.259 Sum_probs=212.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCc
Q 007090 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (618)
Q Consensus 248 ~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~ 327 (618)
+.++|.++++.+..+++++++++||||||++|.+|++.. +.++||++|||+||.|+++.+.+.. +.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 445666666667788999999999999999988887652 5679999999999999988766554 66
Q ss_pred eEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc--
Q 007090 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ-- 405 (618)
Q Consensus 328 ~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q-- 405 (618)
.+...+|+.. +..+++|+|+||++| +....+.++++++||||||| +++.+|...+..++..++..+|
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 6777777754 345799999999998 44566778889999999996 4567778888889998887777
Q ss_pred EEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHH
Q 007090 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDE 485 (618)
Q Consensus 406 ~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~ 485 (618)
+++||||+++.+. ...+....+... .... ..... .+.. + .....+++||||+++..++.
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~---~~~~---i~~~~---~~~~-----l-~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALS---NTGE---IPFYG---KAIP-----I-EAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECB---SCSS---EEETT---EEEC-----G-GGSSSSEEEEECSCHHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeec---ccch---hHHHH---hhhh-----h-hhccCCcEEEEeCCHHHHHH
Confidence 6778999986311 111111111000 0000 00010 0000 0 11246799999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEE----------EcC---------
Q 007090 486 IESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----------NFD--------- 546 (618)
Q Consensus 486 l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI----------~~~--------- 546 (618)
+++.|+..++.+..+||++++.+ |..+..+|||||+++++||||+ +++|| |||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999875 5566779999999999999997 99988 677
Q ss_pred --CCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHH
Q 007090 547 --IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (618)
Q Consensus 547 --~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~ 582 (618)
.|.+...|+||+||+|| | +.|. |+|+++.+...
T Consensus 484 ~~~P~s~~syiQRiGRtGR-g-~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 484 TTVPQDAVSRSQRRGRTGR-G-RRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECBHHHHHHHHTTBCS-S-SCEE-EEESCCCCBCS
T ss_pred ccCcCCHHHHHHHhccCCC-C-CCCE-EEEEecchhhc
Confidence 89999999999999999 7 5799 99999876544
No 49
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-36 Score=299.95 Aligned_cols=236 Identities=42% Similarity=0.721 Sum_probs=202.1
Q ss_pred cCeeeccCCCCC--ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 211 LAIRVSGFDVPR--PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 211 ~~~~~~~~~~p~--p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
..+.+.+...|. ++.+|.++++++.+++.+...|+..|+|+|.++++.++++++++++++||+|||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 356677777777 899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCcc----ccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH
Q 007090 289 DQPEL----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364 (618)
Q Consensus 289 ~~~~~----~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~ 364 (618)
..... ....++++||++|||+||.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 54311 12346789999999999999999999998888899999999999888888888889999999999999998
Q ss_pred ccccccCceeEEEecchhhhhcCCChHHHHHHHHhc--CC--CccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccc
Q 007090 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN 440 (618)
Q Consensus 365 ~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~--~~--~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~ 440 (618)
.....+.++++|||||||++.+++|...+..++..+ +. .+|+++||||+++.+..+++.++.+|+.+.++..+...
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 246 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTS 246 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------
T ss_pred cCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCc
Confidence 887788999999999999999999999999999854 33 68999999999999999999999999999988877666
Q ss_pred cceeEE
Q 007090 441 EDITQV 446 (618)
Q Consensus 441 ~~i~q~ 446 (618)
..+.|.
T Consensus 247 ~~i~q~ 252 (253)
T 1wrb_A 247 DSIKQE 252 (253)
T ss_dssp ------
T ss_pred CCceec
Confidence 666664
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=7e-38 Score=349.66 Aligned_cols=307 Identities=19% Similarity=0.237 Sum_probs=215.7
Q ss_pred CCcHHHH-----HHHHHHh------cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHH
Q 007090 247 KPTSIQC-----QALPIIL------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (618)
Q Consensus 247 ~~~~~Q~-----~~i~~i~------~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~ 315 (618)
.|+++|+ +++|.++ .+++++++++||||||++|++|++.++.. +++++||++|||+||.|++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEccHHHHHHHHH
Confidence 8999999 9999888 89999999999999999999999988754 3678999999999999998
Q ss_pred HHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHH
Q 007090 316 LETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (618)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~ 395 (618)
+.+..+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++++|||||||++ +..+...+..
T Consensus 288 ~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~ 354 (673)
T 2wv9_A 288 EALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGY 354 (673)
T ss_dssp HHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHH
T ss_pred HHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHH
Confidence 887754 322 11111000 00011234445555555444332 46889999999999997 1111222223
Q ss_pred HHHhc-CCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEE
Q 007090 396 IVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVL 474 (618)
Q Consensus 396 i~~~~-~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vL 474 (618)
+...+ ++.+|+++||||+++.+..+... ..|+ ......+.. .....++..+.. ..+++|
T Consensus 355 l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--------------~~v~~~~~~--~~~~~~l~~l~~--~~~~~l 414 (673)
T 2wv9_A 355 IATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--------------HDVSSEIPD--RAWSSGFEWITD--YAGKTV 414 (673)
T ss_dssp HHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--------------EEEECCCCS--SCCSSCCHHHHS--CCSCEE
T ss_pred HHHhccccCCcEEEEcCCCChhhhhhccc--CCce--------------EEEeeecCH--HHHHHHHHHHHh--CCCCEE
Confidence 33333 36799999999998653322110 1111 111111111 111111222222 367999
Q ss_pred EEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE----------
Q 007090 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN---------- 544 (618)
Q Consensus 475 VF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~---------- 544 (618)
|||+++..++.++..|+..++.+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 99999999999999999999999999993 789999999999999999999999999999 999998
Q ss_pred ----------cCCCCCHHHHHHHHhhcccCCCCCeEEEEEe---cCccHHHHHHHHHHHHHcCCCCC
Q 007090 545 ----------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSLIAAGQNVS 598 (618)
Q Consensus 545 ----------~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~---~~~d~~~~~~i~~~l~~~~~~v~ 598 (618)
|++|.++..|+||+||+||.|.+.|.||+|+ ++.+..++..+...+......++
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 6689999999999999999954689999996 56777666666665544443333
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.4e-37 Score=333.78 Aligned_cols=272 Identities=19% Similarity=0.248 Sum_probs=199.5
Q ss_pred HHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECC
Q 007090 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (618)
Q Consensus 256 i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg 335 (618)
..++..++++++++|||||||++|++|++.++.. .++++||++|||+||.|+++.+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456778999999999999999999999988764 26789999999999999988876 3333322221
Q ss_pred CChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh-----hhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-----MFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 336 ~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~-----~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
.... -..+.-+.++|.+.+...+... ..++++++|||||||+ ++.+++...+. ..+.+|+++||
T Consensus 82 ~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred cccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 1110 1234567889999887766543 4588999999999998 44333322211 23689999999
Q ss_pred ccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCC--CcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHH
Q 007090 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (618)
Q Consensus 411 AT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~--~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~ 488 (618)
||++..+..+... ..|+..... .++. .......+.. ..+++||||+++..++.++.
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~~--------------~~~~~~~~~~~~~l~~------~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQD--------------EIPDRAWSSGYEWITE------YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEEC--------------CCCSSCCSSCCHHHHH------CCSCEEEECSCHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEecc--------------cCCcchhHHHHHHHHh------cCCCEEEEeCChHHHHHHHH
Confidence 9998653322111 223322110 1111 1112222222 26799999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEE--------------------cCCC
Q 007090 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------------------FDIA 548 (618)
Q Consensus 489 ~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~--------------------~~~p 548 (618)
.|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|||+ ++||+ |+.|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHHHHHHHHhhcccCCCCCeEEEEEecCc
Q 007090 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (618)
Q Consensus 549 ~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~ 578 (618)
.++..|+||+||+||.|...|.|++|++..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999995479999999885
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=290.55 Aligned_cols=216 Identities=42% Similarity=0.706 Sum_probs=189.4
Q ss_pred cCCCCCccCCccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCc-cc
Q 007090 217 GFDVPRPVKTFED-CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-LQ 294 (618)
Q Consensus 217 ~~~~p~p~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~-~~ 294 (618)
+...|+|+.+|.+ +++++.+++.+.+.|+.+|+|+|.++++.+++++++++++|||+|||++|++|++.++..... ..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 3457999999999 899999999999999999999999999999999999999999999999999999998865321 11
Q ss_pred cCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCcee
Q 007090 295 KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374 (618)
Q Consensus 295 ~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~ 374 (618)
...++++||++||++||.|+++.+.++. ..++++..++||.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2357889999999999999999999986 347899999999988888888889999999999999999988888899999
Q ss_pred EEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEE
Q 007090 375 YLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (618)
Q Consensus 375 ~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~ 433 (618)
+|||||||++.+++|...+..++..+++.+|+++||||+|+.+..++..++.+|+.+.+
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999988753
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.2e-35 Score=317.85 Aligned_cols=270 Identities=21% Similarity=0.224 Sum_probs=194.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|++++++++||||||++|++|++.++.. +++++||++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 37899999999999999999999977654 36789999999999999987664 4555554443221
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCCccEEEEeccccHHHHH
Q 007090 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~ 419 (618)
.-..+.-+.++|.+.+.+.+.. ...+.++++|||||||++ ...+......+.... ++.+|+++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1123456778899988776655 455889999999999996 332333333333332 5789999999999874221
Q ss_pred HHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEE
Q 007090 420 LAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (618)
Q Consensus 420 l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~ 499 (618)
+.. ....+......+. ..+...+...+.. ..+++||||+++..++.+++.|+..++.+..
T Consensus 141 ~~~----------------~~~~i~~~~~~~~--~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPP----------------SNSPIIDEETRIP--DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCC----------------CSSCCEEEECCCC--SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcC----------------CCCceeeccccCC--HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 110 0111111111111 1112222223333 2679999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccE-----------------EEEcCCCCCHHHHHHHHhhcc
Q 007090 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS-----------------VVNFDIARDMDMHVHRIGRTG 562 (618)
Q Consensus 500 l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~-----------------VI~~~~p~~~~~y~Qr~GR~g 562 (618)
+||. +|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+...|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 655 678899999999999999999
Q ss_pred cCCCCCeEEEEEe
Q 007090 563 RAGDKDGTAYTLV 575 (618)
Q Consensus 563 R~g~~~g~~~~l~ 575 (618)
|.|.+.|.++.+.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985456666665
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=286.20 Aligned_cols=209 Identities=43% Similarity=0.713 Sum_probs=193.4
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCe
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 300 (618)
+.+..+|.++++++.+.+.+...|+..|+++|.++++.++++++++++++||+|||++|++|++.++... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 3467889999999999999999999999999999999999999999999999999999999999988654 23678
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEec
Q 007090 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLD 379 (618)
Q Consensus 301 vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~iIvD 379 (618)
+||++|||+|+.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|.+.+.. ....+..+++||||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 99999999999999999999998889999999999998888888888999999999999998876 45668899999999
Q ss_pred chhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEc
Q 007090 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (618)
Q Consensus 380 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (618)
|||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.++
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999988654
No 55
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.4e-35 Score=331.15 Aligned_cols=304 Identities=17% Similarity=0.184 Sum_probs=191.4
Q ss_pred CCCcHHHHHHHHHHhc----C-CcEEEEeCCCCcHHHHHHHHHHHHHhcCC--ccccCCCCeEEEEcccHHHHHHHH-HH
Q 007090 246 EKPTSIQCQALPIILS----G-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP--ELQKEEGPIGVICAPTRELAHQIY-LE 317 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~----~-~dvl~~~~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vLIl~Ptr~La~q~~-~~ 317 (618)
..|+|+|.++++.++. + ++++++++||+|||++++. ++..++... ......++++|||+||++|+.||. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999999875 4 6799999999999998654 444444321 011124788999999999999998 77
Q ss_pred HHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHH----ccccccCceeEEEecchhhhhcCCChHHH
Q 007090 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK----MKALTMSRVTYLVLDEADRMFDLGFEPQI 393 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~----~~~~~l~~~~~iIvDEah~~~~~~~~~~i 393 (618)
+..+ +..+..+.++. ...+.+|+|+||++|...+. ...+....+++|||||||++.... ...+
T Consensus 256 ~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 7665 33444333322 23468999999999988764 233446679999999999987643 2455
Q ss_pred HHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCc----c-ccccceeEEEE-------------------E
Q 007090 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV----G-MANEDITQVVH-------------------V 449 (618)
Q Consensus 394 ~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~----~-~~~~~i~q~~~-------------------~ 449 (618)
..++..++ ..++++||||+..........+++.++....... + .....+..... .
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 66666664 4789999999875443334445554433221000 0 00000000000 0
Q ss_pred c------CCC-------cccHHH----HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCC--------cEEEEeCCC
Q 007090 450 I------PSD-------AEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGF--------KAAALHGDK 504 (618)
Q Consensus 450 ~------~~~-------~~k~~~----l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~--------~~~~l~g~~ 504 (618)
+ ... ..+... +...+......+++||||+++.+++.++..|.+.+. .+..+||.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 0 000 011122 222233222357999999999999999999987543 378899987
Q ss_pred CHHHHHHHHHHHhcCCce---EEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCC
Q 007090 505 DQASRMEILQKFKSGVYH---VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (618)
Q Consensus 505 ~~~~r~~~~~~F~~g~~~---VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g 565 (618)
+. +|..+++.|++|... |||||+++++|+|+|.+++||++++|+++..|+||+||+||.|
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccC
Confidence 64 799999999998765 8889999999999999999999999999999999999999987
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.2e-34 Score=285.51 Aligned_cols=213 Identities=33% Similarity=0.537 Sum_probs=180.8
Q ss_pred cCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccC
Q 007090 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (618)
Q Consensus 217 ~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (618)
..+.|.++.+|+++++++.+++.+...||..|+++|.++++.+++++++++++|||+|||++|++|++.++... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34467889999999999999999999999999999999999999999999999999999999999999886432 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcC-CcEEEeChHHHHHHHHccccccCceeE
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTY 375 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~l~~~~~ 375 (618)
.++++||++||++|+.|+++.+.+++...++.+...+||.....+...+..+ ++|+|+||++|.+.+......+..+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 4678999999999999999999999887888999999998877777777665 899999999999999887778889999
Q ss_pred EEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEc
Q 007090 376 LVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (618)
Q Consensus 376 iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (618)
|||||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.++
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999887654
No 57
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=286.78 Aligned_cols=230 Identities=33% Similarity=0.574 Sum_probs=198.4
Q ss_pred HHHHHHHhcCeeeccCCCCCccCCcccc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 203 DVMEYKKSLAIRVSGFDVPRPVKTFEDC----GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~p~p~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
++..+++...+.+.+...|.|+.+|.++ ++++.+++.+...|+..|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4667888999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH-HHHcCCcEEEeChH
Q 007090 279 FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK-ELKAGCEIVIATPG 357 (618)
Q Consensus 279 ~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~-~l~~~~dIiv~Tp~ 357 (618)
|++|++.++... ...++++||++||++|+.|+++.+.+++...++++..+.|+........ ....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988542 2347789999999999999999999998888888877766543322211 12346899999999
Q ss_pred HHHHHHHcc--ccccCceeEEEecchhhhhc---CCChHHHHHHHHhcC-CCccEEEEeccccHHHHHHHHHHcCCCeEE
Q 007090 358 RLIDMLKMK--ALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (618)
Q Consensus 358 ~L~~~l~~~--~~~l~~~~~iIvDEah~~~~---~~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i 431 (618)
+|..++... ...+.++.+|||||||++.+ .+|...+..++..+. +..|+++||||+|+.+..+++.++.+|+.+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999999765 46788999999999999988 468888888887764 578999999999999999999999999999
Q ss_pred EEcCc
Q 007090 432 TVGEV 436 (618)
Q Consensus 432 ~~~~~ 436 (618)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 88753
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=280.16 Aligned_cols=228 Identities=32% Similarity=0.507 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHH
Q 007090 201 EQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280 (618)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~ 280 (618)
.++...+++.+.. ..++++.+|.++++++.+++.+...|+..|+|+|.++++.+++++++++++|||+|||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 3445555555432 12567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHH
Q 007090 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI 360 (618)
Q Consensus 281 l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~ 360 (618)
+|++.++..... ....++++||++||++|+.|+++.+.++....++++..++|+.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998875421 1234788999999999999999999999887789999999998877665554 57999999999999
Q ss_pred HHHHcc-ccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcC
Q 007090 361 DMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (618)
Q Consensus 361 ~~l~~~-~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (618)
+.+... ...+..+++|||||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+..
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 988654 456789999999999999999999999999999999999999999999999999999999999887643
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.1e-34 Score=279.62 Aligned_cols=211 Identities=27% Similarity=0.446 Sum_probs=184.5
Q ss_pred cCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccC
Q 007090 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (618)
Q Consensus 217 ~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~ 296 (618)
+...|.+..+|+++++++.+.+.+...||..|+++|.++++.++++++++++++||+|||++|++|++.++... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 44567888999999999999999999999999999999999999999999999999999999999999887532 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeE
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~ 375 (618)
.++++||++||++|+.|+++.+.++.... ++++..++||.....+...+ .+++|+|+||++|.+++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 46789999999999999999999997654 78899999988876665544 47999999999999999887778889999
Q ss_pred EEecchhhhhcCC-ChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEE
Q 007090 376 LVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (618)
Q Consensus 376 iIvDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~ 433 (618)
|||||||++.+++ |...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999997 999999999999989999999999999999999999999987754
No 60
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.8e-34 Score=312.00 Aligned_cols=312 Identities=17% Similarity=0.226 Sum_probs=218.1
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..|+|+|.++++++. .++++|++++||+|||++++.. +..+... ....++|||||+ .|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~-i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH-HHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 479999999999874 6789999999999999986544 4444322 224569999995 5889999999999
Q ss_pred HhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC
Q 007090 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (618)
Q Consensus 322 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~ 401 (618)
++ ++++..+.|+... ....+++|+|+||+.+..... +....+++|||||||++.+.. ......+..++
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~ 176 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK 176 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc
Confidence 75 4566666555432 112358999999999976543 334578999999999987654 34445555553
Q ss_pred CCccEEEEeccccHH-HHHH------------------------------------HHHHcCCCeEEEEcCcc----ccc
Q 007090 402 PDRQTLLFSATMPRK-VEKL------------------------------------AREILSDPVRVTVGEVG----MAN 440 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~-~~~l------------------------------------~~~~~~~~~~i~~~~~~----~~~ 440 (618)
..+.+++|||+..+ +.++ +..++. |+.+...... ...
T Consensus 177 -~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 177 -SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDL 254 (500)
T ss_dssp -EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTS
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcC
Confidence 46789999998432 1111 111111 2222111100 001
Q ss_pred cceeEEEEEcC--------------------------------------------------------CCcccHHHHHHhc
Q 007090 441 EDITQVVHVIP--------------------------------------------------------SDAEKLPWLLEKL 464 (618)
Q Consensus 441 ~~i~q~~~~~~--------------------------------------------------------~~~~k~~~l~~~l 464 (618)
+........+. ....|...+.+.+
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11111111111 1123444444555
Q ss_pred CCCC-CCCcEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcC-Cce-EEEecccccccCCcCCcc
Q 007090 465 PGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIK 540 (618)
Q Consensus 465 ~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~-VLVaT~~~~~Gldi~~v~ 540 (618)
.... .+.++||||++...++.++..|... |+.+..+||++++.+|.++++.|++| ..+ +|++|+++++|+|+++++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 4332 3569999999999999999999885 99999999999999999999999998 454 799999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhcccCCCC-CeEEEEEecCc
Q 007090 541 SVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (618)
Q Consensus 541 ~VI~~~~p~~~~~y~Qr~GR~gR~g~~-~g~~~~l~~~~ 578 (618)
+||+|++|||+..|.||+||++|.|++ +..+|.|++..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999943 45567777765
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-34 Score=279.86 Aligned_cols=208 Identities=37% Similarity=0.574 Sum_probs=186.6
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
|..+|.++++++.+++.+.+.|+..|+++|.++++.++++++++++++||+|||++|++|++.++... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45689999999999999999999999999999999999999999999999999999999999887532 2467899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhc----CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 007090 303 ICAPTRELAHQIYLETKKFAKSH----GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIv 378 (618)
|++||++|+.|+++.+.++.... ++.+..++||.........+..+++|+|+||++|.+.+......+..+++|||
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999998765 68888889988766655555567899999999999999887778899999999
Q ss_pred cchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcC
Q 007090 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (618)
Q Consensus 379 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (618)
||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999998886643
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=7.7e-34 Score=277.17 Aligned_cols=211 Identities=33% Similarity=0.567 Sum_probs=183.7
Q ss_pred CCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCC
Q 007090 219 DVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (618)
Q Consensus 219 ~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 298 (618)
..|+++.+|.++++++.+++.+...|+..|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..+
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~~ 82 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 82 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CCC
Confidence 467888999999999999999999999999999999999999999999999999999999999999887432 346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEe
Q 007090 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (618)
Q Consensus 299 ~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIv 378 (618)
+++||++||++|+.|+++.+.+++...++++..++|+.....+...+. .++|+|+||++|.+.+......+.++++|||
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999998888899999999887766655444 3899999999999999887778899999999
Q ss_pred cchhhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEcC
Q 007090 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (618)
Q Consensus 379 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~ 435 (618)
||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.+..
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred cChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999998887654
No 63
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=290.60 Aligned_cols=214 Identities=31% Similarity=0.453 Sum_probs=186.7
Q ss_pred eeeccCCCCC---ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 213 IRVSGFDVPR---PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 213 ~~~~~~~~p~---p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+.+.+...+. ++.+|.+++|++.+++.+...||..|+++|.+++|.++++ ++++++++||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3344444444 4678999999999999999999999999999999999998 9999999999999999999999987
Q ss_pred hcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHc-
Q 007090 288 MDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM- 365 (618)
Q Consensus 288 ~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~- 365 (618)
... ..+|++|||+|||+||.|+++.+..++... ++.+.+.+|+...... ...+++|+||||++|.+++.+
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhc
Confidence 542 347889999999999999999999998754 6788888887764332 145689999999999999965
Q ss_pred cccccCceeEEEecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEEc
Q 007090 366 KALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (618)
Q Consensus 366 ~~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~ 434 (618)
..+.++++.+|||||||+|++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.+.
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 556789999999999999998 689999999999999999999999999999999999999999988764
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-33 Score=271.46 Aligned_cols=202 Identities=35% Similarity=0.596 Sum_probs=186.3
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE
Q 007090 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (618)
Q Consensus 225 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl 304 (618)
.+|+++++++.+++.+...|+..|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886432 346789999
Q ss_pred cccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhh
Q 007090 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (618)
Q Consensus 305 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~ 383 (618)
+||++|+.|+++.+.++.... ++.+...+|+.....+...+..+++|+|+||++|.+.+......+.++++|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998776 7889999999988888777778899999999999999988777889999999999999
Q ss_pred hhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEE
Q 007090 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (618)
Q Consensus 384 ~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i 431 (618)
+.+.+|...+..++..+++.+|+++||||+|+.+..+++.++.+|+.+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999899999999999999999999999999765
No 65
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.2e-34 Score=335.79 Aligned_cols=334 Identities=19% Similarity=0.183 Sum_probs=225.4
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..|+|+|..++.+++.. .++|++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 57999999999998864 589999999999999987666555432 223479999999 99999999997765
Q ss_pred hcCceEEEEECCCChHHHHH---HHHcCCcEEEeChHHHHHHHHc-cccccCceeEEEecchhhhhcCCChH--HHHHHH
Q 007090 324 SHGIRVSAVYGGMSKLDQFK---ELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEADRMFDLGFEP--QIRSIV 397 (618)
Q Consensus 324 ~~~~~~~~~~gg~~~~~~~~---~l~~~~dIiv~Tp~~L~~~l~~-~~~~l~~~~~iIvDEah~~~~~~~~~--~i~~i~ 397 (618)
++.+..+.++. ...... ......+|+|+|++.|...... ..+....+++|||||||++.+.+... ....+.
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 56665554432 111111 1112479999999988643211 12335578999999999987655321 122222
Q ss_pred HhcCCCccEEEEeccccHH----HHHHHH----------------------------HHcCC------------------
Q 007090 398 GQIRPDRQTLLFSATMPRK----VEKLAR----------------------------EILSD------------------ 427 (618)
Q Consensus 398 ~~~~~~~q~i~~SAT~~~~----~~~l~~----------------------------~~~~~------------------ 427 (618)
.......+++++||||.++ +..+++ .+...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 2233556799999998420 000000 00000
Q ss_pred ----------------------------------CeEEEEcCcc---ccccceeEEEE----------------------
Q 007090 428 ----------------------------------PVRVTVGEVG---MANEDITQVVH---------------------- 448 (618)
Q Consensus 428 ----------------------------------~~~i~~~~~~---~~~~~i~q~~~---------------------- 448 (618)
.+.+...... ...........
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000000 00000000000
Q ss_pred ----------------------EcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCCC
Q 007090 449 ----------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKD 505 (618)
Q Consensus 449 ----------------------~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~-~~~~~~~l~g~~~ 505 (618)
.......|...+...+.. ...+++||||++...++.++..|.. .|+.+..+||+++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 011233467777777765 3467999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHHhcCC--ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHH
Q 007090 506 QASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (618)
Q Consensus 506 ~~~r~~~~~~F~~g~--~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~ 583 (618)
+.+|..+++.|++|+ ++|||||+++++|+|+|++++||+|++|+++..|.||+||+||.|+ .|.|+++.........
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq-~~~v~v~~~~~~~t~e 618 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ-AHDIQIHVPYLEKTAQ 618 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS-CSCCEEEEEEETTSHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC-CceEEEEEecCCChHH
Confidence 999999999999998 9999999999999999999999999999999999999999999994 4544444333333334
Q ss_pred HHHHHHHHH
Q 007090 584 GELVNSLIA 592 (618)
Q Consensus 584 ~~i~~~l~~ 592 (618)
..|.+.+..
T Consensus 619 e~i~~~~~~ 627 (968)
T 3dmq_A 619 SVLVRWYHE 627 (968)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555543
No 66
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=324.09 Aligned_cols=386 Identities=16% Similarity=0.226 Sum_probs=254.1
Q ss_pred CCcccCccCCccccCCCHHHHHHHHHhcCeee---ccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh
Q 007090 184 PFNKDFYQDSASISGMSEQDVMEYKKSLAIRV---SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL 260 (618)
Q Consensus 184 ~f~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~ 260 (618)
|+....|.....+..+..+.+..+........ .....+.....|..+...+... .-..|+|+|.+++.+++
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~ 249 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMA 249 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHH
Confidence 44455665555566677777777776542211 1111122222333332222111 11479999999999887
Q ss_pred ----cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCC
Q 007090 261 ----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336 (618)
Q Consensus 261 ----~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~ 336 (618)
.++++|++.+||+|||++++..+...+... .....+||||| ..|+.||.+++.++++ ++++.+..|+.
T Consensus 250 ~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~ 321 (800)
T 3mwy_W 250 FLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQ 321 (800)
T ss_dssp HHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSS
T ss_pred HHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCH
Confidence 889999999999999998655543332211 22345899999 5778899999999985 56777776665
Q ss_pred ChHHHHHHHH------------cCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 337 SKLDQFKELK------------AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 337 ~~~~~~~~l~------------~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
.......... ..++|+|+||+.+..... .+....+.+|||||||++.+.. ......+..++ ..
T Consensus 322 ~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~-~~ 396 (800)
T 3mwy_W 322 KSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFK-VA 396 (800)
T ss_dssp HHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSE-EE
T ss_pred HHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCch--hHHHHHHHHhh-hc
Confidence 5444433321 247899999999976532 2223468999999999987543 34555555553 44
Q ss_pred cEEEEeccccH----HHHHHHHHHcCC-----------------------------CeEEEEcCcc--ccccceeEEEEE
Q 007090 405 QTLLFSATMPR----KVEKLAREILSD-----------------------------PVRVTVGEVG--MANEDITQVVHV 449 (618)
Q Consensus 405 q~i~~SAT~~~----~~~~l~~~~~~~-----------------------------~~~i~~~~~~--~~~~~i~q~~~~ 449 (618)
..+++||||.. .+-.++..+... |+.+.-.... ...+........
T Consensus 397 ~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~ 476 (800)
T 3mwy_W 397 NRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILR 476 (800)
T ss_dssp EEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEE
T ss_pred cEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEE
Confidence 56889999821 222222211111 1111100000 000000001111
Q ss_pred cC--------------------------------------------------------------------------CCcc
Q 007090 450 IP--------------------------------------------------------------------------SDAE 455 (618)
Q Consensus 450 ~~--------------------------------------------------------------------------~~~~ 455 (618)
+. ..+.
T Consensus 477 v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 556 (800)
T 3mwy_W 477 VELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSG 556 (800)
T ss_dssp ECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCH
T ss_pred eCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcCh
Confidence 00 0133
Q ss_pred cHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCc---eEEEeccccc
Q 007090 456 KLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY---HVLIATDVAA 531 (618)
Q Consensus 456 k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~---~VLVaT~~~~ 531 (618)
|+..|..+|..... +.++||||+....++.|..+|...|+.+..+||+++..+|..++..|++|.. .+|++|.+++
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 55555555554433 4599999999999999999999999999999999999999999999998544 5999999999
Q ss_pred ccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCC-CCeEEEEEecCc--cHHHHHHHHH
Q 007090 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK--EARFAGELVN 588 (618)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~-~~g~~~~l~~~~--d~~~~~~i~~ 588 (618)
+|||++.+++||+||+|||+..+.||+||++|.|+ ++..+|.|++.. +...+..+.+
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 457788888876 4444444433
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.7e-33 Score=269.71 Aligned_cols=204 Identities=41% Similarity=0.682 Sum_probs=186.9
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc
Q 007090 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (618)
Q Consensus 226 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~ 305 (618)
+|.++++++.+++.+...|+..|+|+|.++++.+++++++++++|||+|||++|++|++.++.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998876432 123478899999
Q ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 306 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
||++|+.|+++.+.+++. .+++..++|+.........+..+++|+|+||++|.+.+......+..+++|||||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 999999999999999976 378888999988888877888899999999999999998877788999999999999999
Q ss_pred cCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEEE
Q 007090 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (618)
Q Consensus 386 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~ 433 (618)
+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999988765
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4e-34 Score=318.36 Aligned_cols=284 Identities=20% Similarity=0.235 Sum_probs=210.3
Q ss_pred HHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECC
Q 007090 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (618)
Q Consensus 256 i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg 335 (618)
....+.+++++++||||||||+ +++..+... +.++|++|||+||.|+++.+.+. ++.+..++|+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred HHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 3455788999999999999997 334444332 33599999999999999998776 7888888887
Q ss_pred CChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC-CCccEEEEecccc
Q 007090 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PDRQTLLFSATMP 414 (618)
Q Consensus 336 ~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~-~~~q~i~~SAT~~ 414 (618)
...... .-....+++++|++.+. ....+++|||||||++.+.++...+..++..++ ...|++++|||.+
T Consensus 213 ~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 213 ERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp CEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred eeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 654100 00012567777763321 346789999999999999999999999988887 7789999999963
Q ss_pred HHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCC
Q 007090 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG 494 (618)
Q Consensus 415 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~ 494 (618)
.+..++... +..+.+...... .. . ...... + ..+... ..+.+|||+++..++.++..|...+
T Consensus 283 -~i~~l~~~~-~~~~~v~~~~r~---~~--l--~~~~~~---l----~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 283 -LVMELMYTT-GEEVEVRDYKRL---TP--I--SVLDHA---L----ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp -HHHHHHHHH-TCCEEEEECCCS---SC--E--EECSSC---C----CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHhc-CCceEEEEeeec---ch--H--HHHHHH---H----HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 445555443 334443221100 00 0 000000 0 111111 3456889999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhc--CCceEEEecccccccCCcCCccEEEEcCC--------------CCCHHHHHHHH
Q 007090 495 FKAAALHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDI--------------ARDMDMHVHRI 558 (618)
Q Consensus 495 ~~~~~l~g~~~~~~r~~~~~~F~~--g~~~VLVaT~~~~~Gldi~~v~~VI~~~~--------------p~~~~~y~Qr~ 558 (618)
+.+..+||++++.+|..+++.|++ |.++|||||+++++|+|+ +|++||+++. |.+...|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 899999999999999999 9999999999 78999999999
Q ss_pred hhcccCCCC--CeEEEEEecCccHHHHHH
Q 007090 559 GRTGRAGDK--DGTAYTLVTQKEARFAGE 585 (618)
Q Consensus 559 GR~gR~g~~--~g~~~~l~~~~d~~~~~~ 585 (618)
||+||.|.. .|.|+.+... +...+.+
T Consensus 424 GRAGR~g~~g~~G~v~~l~~~-d~~~~~~ 451 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMNHE-DLSLLKE 451 (677)
T ss_dssp TTBTCTTSSCSSEEEEESSTT-HHHHHHH
T ss_pred cCCCCCCCCCCCEEEEEEecc-hHHHHHH
Confidence 999999943 4777666544 4443333
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1e-32 Score=298.37 Aligned_cols=330 Identities=18% Similarity=0.205 Sum_probs=240.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+++|..+.-.+..|+ |..+.||+|||+++.+|++.+.+. |..|.||+||+.||.|-++++..+...+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 368899999988888886 999999999999999999866543 6679999999999999999999999999
Q ss_pred CceEEEEECC--------------------------------------------------CChHHHHHHHHcCCcEEEeC
Q 007090 326 GIRVSAVYGG--------------------------------------------------MSKLDQFKELKAGCEIVIAT 355 (618)
Q Consensus 326 ~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~dIiv~T 355 (618)
|+++.+++.. .+.. ..+... .|||+++|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-err~aY-~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI-TRKEAY-LCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC-CHHHHH-HSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH-HHHHHh-cCCCEEcc
Confidence 9999999882 1111 112222 38999999
Q ss_pred hHHHH-HHHHc------cccccCceeEEEecchhhhhc-C------------C---ChHHHHHHHHhc------------
Q 007090 356 PGRLI-DMLKM------KALTMSRVTYLVLDEADRMFD-L------------G---FEPQIRSIVGQI------------ 400 (618)
Q Consensus 356 p~~L~-~~l~~------~~~~l~~~~~iIvDEah~~~~-~------------~---~~~~i~~i~~~~------------ 400 (618)
..-|- +.|+- .....+.+.+.||||+|.++- . . +...+..+...+
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 98875 34432 122356789999999997621 0 0 000000111000
Q ss_pred --------------------------------------------CC----------------------------------
Q 007090 401 --------------------------------------------RP---------------------------------- 402 (618)
Q Consensus 401 --------------------------------------------~~---------------------------------- 402 (618)
..
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 00
Q ss_pred ---------------------------CccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcc
Q 007090 403 ---------------------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (618)
Q Consensus 403 ---------------------------~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~ 455 (618)
-.++.+||+|.......+...|.- .+. .+ +.......+.+...++.+...
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l-~vv-~I-Ptnkp~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM-EVV-VI-PTHKPMIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC-CEE-EC-CCSSCCCCEECCCEEESSHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC-eEE-EE-CCCCCcceeecCcEEEecHHH
Confidence 047889999999887777655533 222 22 222222233332234445677
Q ss_pred cHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccC
Q 007090 456 KLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (618)
Q Consensus 456 k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gl 534 (618)
|+..++..+.... ...++||||+|+..++.+++.|.+.|+++.++||+..+.++..+...|+.| .|+|||++++||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 8888888886542 356899999999999999999999999999999985555555555555555 6999999999999
Q ss_pred CcC--------CccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHH----HHHHHHHHHHc
Q 007090 535 DIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF----AGELVNSLIAA 593 (618)
Q Consensus 535 di~--------~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~----~~~i~~~l~~~ 593 (618)
||+ ++.+||+|+.|.+...|+||+||+||.| .+|.+++|++..|..+ -.++...+...
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG-~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~ 606 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQG-DPGESIFFLSLEDDLLRIFGSEQIGKVMNIL 606 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSS-CCCEEEEEEETTSHHHHHTTHHHHHHHHHHS
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCC-CCeeEEEEechhHHHHHhhhHHHHHHHHHHc
Confidence 998 6779999999999999999999999999 6899999999988433 23444445443
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=276.43 Aligned_cols=204 Identities=36% Similarity=0.572 Sum_probs=182.4
Q ss_pred CCccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE
Q 007090 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (618)
Q Consensus 225 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL 302 (618)
.+|.+++ +++.+++.+...||..|+|+|.++++.++.+++++++++||+|||++|++|++..+...+.. ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566666 99999999999999999999999999999999999999999999999999999988764321 23478899
Q ss_pred EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHcc-ccccCceeEEEecch
Q 007090 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (618)
Q Consensus 303 Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~l~~~~~iIvDEa 381 (618)
|++|||+||.|+++.+.+++...+..+..++|+.....+...+..+++|+|+||++|.+.+... ...+.++.+||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988899999999999998888888889999999999999988664 366889999999999
Q ss_pred hhhhcCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCe
Q 007090 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (618)
Q Consensus 382 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~ 429 (618)
|+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987643
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-31 Score=300.48 Aligned_cols=338 Identities=17% Similarity=0.186 Sum_probs=229.4
Q ss_pred CCCcHHHHHHHHHHh---------cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~---------~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~ 316 (618)
..|+|+|.+++.++. .++.+|++.+||+|||++++..+... +...........++|||||+ .|+.||.+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l-~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL-LKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHH-HHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHH-HHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 469999999999985 45679999999999999876555444 33322122234568999997 78889999
Q ss_pred HHHHHHhhcCceEEEEECCCChHH--HHHHHHc------CCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCC
Q 007090 317 ETKKFAKSHGIRVSAVYGGMSKLD--QFKELKA------GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (618)
Q Consensus 317 ~~~~~~~~~~~~~~~~~gg~~~~~--~~~~l~~------~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~ 388 (618)
++.++++. .+.+..+++|..... ....... .++|+|+||+.+.... ..+....+++||+||||++.+..
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 99999875 566666766654321 1112211 3789999999997653 23334578999999999987653
Q ss_pred ChHHHHHHHHhcCCCccEEEEeccccHHH---------------------------------------------------
Q 007090 389 FEPQIRSIVGQIRPDRQTLLFSATMPRKV--------------------------------------------------- 417 (618)
Q Consensus 389 ~~~~i~~i~~~~~~~~q~i~~SAT~~~~~--------------------------------------------------- 417 (618)
......+..++ ....+++|||+-.+-
T Consensus 209 --~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 34444455554 456799999983210
Q ss_pred --HHHHHHHcCCCeEEEEcCcc-ccccceeEEEEEcC-------------------------------------------
Q 007090 418 --EKLAREILSDPVRVTVGEVG-MANEDITQVVHVIP------------------------------------------- 451 (618)
Q Consensus 418 --~~l~~~~~~~~~~i~~~~~~-~~~~~i~q~~~~~~------------------------------------------- 451 (618)
..++..++-... -.... ..+....+.+ .+.
T Consensus 286 ~L~~~l~~~~lRR~---k~~v~~~LP~k~~~~v-~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~ 361 (644)
T 1z3i_X 286 ELISIVNRCLIRRT---SDILSKYLPVKIEQVV-CCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCN 361 (644)
T ss_dssp HHHHHHHHHEECCC---GGGGGGTSCCEEEEEE-EECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---HHhHhhhCCCceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhC
Confidence 001111110000 00000 0000011111 000
Q ss_pred ----------------------------------CCcccHHHHHHhcCCC--CCCCcEEEEcCChhHHHHHHHHHHhCCC
Q 007090 452 ----------------------------------SDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQKGF 495 (618)
Q Consensus 452 ----------------------------------~~~~k~~~l~~~l~~~--~~~~~vLVF~~~~~~~~~l~~~L~~~~~ 495 (618)
..+.|+..+..++... ....++||||++...++.+...|...|+
T Consensus 362 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~ 441 (644)
T 1z3i_X 362 HPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRY 441 (644)
T ss_dssp CTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCC
Confidence 0012222222222211 1256999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCc---eEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCC-CCeEE
Q 007090 496 KAAALHGDKDQASRMEILQKFKSGVY---HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTA 571 (618)
Q Consensus 496 ~~~~l~g~~~~~~r~~~~~~F~~g~~---~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~-~~g~~ 571 (618)
.+..+||++++.+|..+++.|++|.. .+||+|.++++|+|++++++||+||+|||+..|.|++||++|.|+ +...+
T Consensus 442 ~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v 521 (644)
T 1z3i_X 442 LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYI 521 (644)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEE
Confidence 99999999999999999999999865 489999999999999999999999999999999999999999994 34678
Q ss_pred EEEecCc--cHHHHHHHHHHHHHcCC
Q 007090 572 YTLVTQK--EARFAGELVNSLIAAGQ 595 (618)
Q Consensus 572 ~~l~~~~--d~~~~~~i~~~l~~~~~ 595 (618)
|.|++.. +...+..+.........
T Consensus 522 ~~lv~~~tiEe~i~~~~~~K~~l~~~ 547 (644)
T 1z3i_X 522 YRLLSTGTIEEKILQRQAHKKALSSC 547 (644)
T ss_dssp EEEEETTSHHHHHHHHHHHHHHTSCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 8888876 44455555444444433
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.1e-33 Score=269.17 Aligned_cols=208 Identities=30% Similarity=0.536 Sum_probs=183.0
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCC
Q 007090 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (618)
Q Consensus 220 ~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 299 (618)
.+....+|.++++++.+.+.+...|+..|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 34455779999999999999999999999999999999999999999999999999999999999876432 2356
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEEE
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iI 377 (618)
++||++||++|+.||++.+.++.... ++++..++|+.....+...+.. .++|+|+||++|...+......+..+++||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998765 7899999999888777766665 469999999999999988777889999999
Q ss_pred ecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHHHcCCCeEEE
Q 007090 378 LDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (618)
Q Consensus 378 vDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~ 432 (618)
|||||++.+ .++...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4778888899998888999999999999999999999999998765
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=9.4e-31 Score=302.90 Aligned_cols=313 Identities=14% Similarity=0.116 Sum_probs=214.5
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHH
Q 007090 246 EKPTSIQCQALPIILS--------------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~--------------~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La 311 (618)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+.. .+..+++||||||++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-----~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-----LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-----CTTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-----cCCCceEEEEeCcHHHH
Confidence 3599999999999875 368999999999999986 555544422 12346899999999999
Q ss_pred HHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccc--cccCceeEEEecchhhhhcCC
Q 007090 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLG 388 (618)
Q Consensus 312 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~--~~l~~~~~iIvDEah~~~~~~ 388 (618)
.||.+.+.++... .+.++.+.......+. .+.+|+|+||++|...+.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-- 415 (1038)
T ss_dssp HHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--
T ss_pred HHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--
Confidence 9999999988642 1235555555555564 468999999999999876432 2456789999999999763
Q ss_pred ChHHHHHHHHhcCCCccEEEEeccccHHHH----HHHHHHcCCCe-----------------EEEEcCcccccc------
Q 007090 389 FEPQIRSIVGQIRPDRQTLLFSATMPRKVE----KLAREILSDPV-----------------RVTVGEVGMANE------ 441 (618)
Q Consensus 389 ~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~----~l~~~~~~~~~-----------------~i~~~~~~~~~~------ 441 (618)
......++..+ +..++++|||||..... .....+++.++ .+..........
T Consensus 416 -~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 416 -GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp -HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred -hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 23345566665 45899999999975321 12223333332 222111000000
Q ss_pred ------ceeEEEEEcCCCcccHHHHHHhc----CCC-------CCCCcEEEEcCChhHHHHHHHHHHhCC----------
Q 007090 442 ------DITQVVHVIPSDAEKLPWLLEKL----PGM-------IDDGDVLVFASKKTTVDEIESQLAQKG---------- 494 (618)
Q Consensus 442 ------~i~q~~~~~~~~~~k~~~l~~~l----~~~-------~~~~~vLVF~~~~~~~~~l~~~L~~~~---------- 494 (618)
.+.+. ..+ ....+...+...+ ... ....++||||+++..|..+++.|.+.+
T Consensus 494 d~~~~~~i~~~-~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 494 DEKKLSAAENQ-QAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CHHHHHHTCST-TTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cHHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 00000 000 0112222322222 111 123579999999999999999997653
Q ss_pred --CcEEE-EeCC----------C----------CH-----------------------------HHHHHHHHHHhcCCce
Q 007090 495 --FKAAA-LHGD----------K----------DQ-----------------------------ASRMEILQKFKSGVYH 522 (618)
Q Consensus 495 --~~~~~-l~g~----------~----------~~-----------------------------~~r~~~~~~F~~g~~~ 522 (618)
+++.+ +||. + ++ ..|..+++.|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 55644 4442 1 22 1478899999999999
Q ss_pred EEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCC---CeEEEEEecC
Q 007090 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK---DGTAYTLVTQ 577 (618)
Q Consensus 523 VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~---~g~~~~l~~~ 577 (618)
|||+|+++.+|+|+|.+ +|+++|.|.+...|+||+||++|.+.. .|.++.|+..
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 99999999999999999 788999999999999999999999832 3777777653
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.2e-28 Score=266.93 Aligned_cols=318 Identities=19% Similarity=0.223 Sum_probs=236.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.|+ .|+++|..++|.+++|+ |..+.||+|||++|++|++.+.+. |..++||+||++||.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 577 99999999999999998 999999999999999999766542 5579999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHH-HHHHHccc------cccC---ceeEEEecchhhhh-cCCCh-
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMS---RVTYLVLDEADRMF-DLGFE- 390 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~------~~l~---~~~~iIvDEah~~~-~~~~~- 390 (618)
..+|+++.+++||.+... +....++||+|+||++| .+++..+. ..++ .+.++||||+|+|+ +.+..
T Consensus 145 ~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 999999999999987533 34445799999999999 78886542 4567 89999999999886 21110
Q ss_pred --------------HHHHHHHHhcCC------------------------------------------------------
Q 007090 391 --------------PQIRSIVGQIRP------------------------------------------------------ 402 (618)
Q Consensus 391 --------------~~i~~i~~~~~~------------------------------------------------------ 402 (618)
..+..++..++.
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 112222221110
Q ss_pred ---------------------------------------------------------------------------CccEE
Q 007090 403 ---------------------------------------------------------------------------DRQTL 407 (618)
Q Consensus 403 ---------------------------------------------------------------------------~~q~i 407 (618)
..++.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 03677
Q ss_pred EEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHH
Q 007090 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEI 486 (618)
Q Consensus 408 ~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l 486 (618)
+||+|.......+...|-- .+.+. +.............++.+...|+..++..+..... +.+|||+|.|.+..+.|
T Consensus 383 GMTGTA~tE~~Ef~~iY~l-~Vv~I--PTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEIYGM-DVVVV--PTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEESSCGGGHHHHHHHHCC-CEEEC--CCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred ecCCCchHHHHHHHHHhCC-CEEEc--CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 8999988776666555533 33222 22222222333444556677888888877765533 45899999999999999
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 007090 487 ESQLA--------------------------------------------------------------------------- 491 (618)
Q Consensus 487 ~~~L~--------------------------------------------------------------------------- 491 (618)
+.+|+
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99999
Q ss_pred -hCCCcEEEEeCCCCHHHHHHHHHHHhcCC-ceEEEecccccccCCcCCc-------------------c----------
Q 007090 492 -QKGFKAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIKSI-------------------K---------- 540 (618)
Q Consensus 492 -~~~~~~~~l~g~~~~~~r~~~~~~F~~g~-~~VLVaT~~~~~Gldi~~v-------------------~---------- 540 (618)
+.|++.-+|+......+- .++. +.|+ -.|-|||++|+||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 567777888865433222 2221 2343 4699999999999999632 1
Q ss_pred ---------------------------------------------EEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEe
Q 007090 541 ---------------------------------------------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (618)
Q Consensus 541 ---------------------------------------------~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~ 575 (618)
+||--..+.|..--.|--||+||.| .+|.+..++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQG-DPGsSrF~L 695 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQG-DPGGSRFYV 695 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSS-CCCEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCC-CCCCeEEEE
Confidence 7888888888888899999999999 579998888
Q ss_pred cCccH
Q 007090 576 TQKEA 580 (618)
Q Consensus 576 ~~~d~ 580 (618)
|-.|.
T Consensus 696 SLeDd 700 (997)
T 2ipc_A 696 SFDDD 700 (997)
T ss_dssp ESSSH
T ss_pred ECChH
Confidence 87764
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=233.15 Aligned_cols=181 Identities=36% Similarity=0.535 Sum_probs=149.1
Q ss_pred HHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q 007090 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALH 501 (618)
Q Consensus 422 ~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~ 501 (618)
..|+.+|+.+.++..+.....+.|.+..+. ...|...|...+... .+++||||+++..++.++..|...++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp -------------------CCSEEEEEECC-GGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 457888999998888888889999998886 457899999988764 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCc-cH
Q 007090 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EA 580 (618)
Q Consensus 502 g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~-d~ 580 (618)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++. +.
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g-~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG-NTGIATTFINKACDE 164 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC----CCEEEEEECTTSCH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC-CCcEEEEEEcCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 579999999986 88
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHh
Q 007090 581 RFAGELVNSLIAAGQNVSMELMDLAM 606 (618)
Q Consensus 581 ~~~~~i~~~l~~~~~~v~~~l~~~~~ 606 (618)
.++..|.+.|...++.+|+.|.+++.
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 99999999999999999999987653
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=4.6e-27 Score=263.39 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=134.5
Q ss_pred CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCCh
Q 007090 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~ 480 (618)
..+|+++||||+++..... ....+...+...+...+. +. +.....+...++..|.... .+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDPL----VR-VKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCCE----EE-EECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCCe----EE-EecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3578999999998653211 111111111111111111 11 1222345555655554433 356999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC-----CCCHHHHH
Q 007090 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (618)
Q Consensus 481 ~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~-----p~~~~~y~ 555 (618)
..++.++.+|...|+.+..+||++++.+|..+++.|+.|.+.|||||+++++|+|+|++++||+++. |.+...|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHhhcccCCCCCeEEEEEecCccHHHHHHHHH
Q 007090 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (618)
Q Consensus 556 Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~ 588 (618)
||+||+||.| .|.|+++++..+..+...|.+
T Consensus 530 Qr~GRagR~~--~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA--RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST--TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999997 799999999877655544443
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=222.52 Aligned_cols=168 Identities=38% Similarity=0.609 Sum_probs=141.5
Q ss_pred ccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 007090 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (618)
Q Consensus 438 ~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~ 517 (618)
....++.|.+..+. ...|...|..++......+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+
T Consensus 15 ~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 45667899988886 45788888888876555679999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCC
Q 007090 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNV 597 (618)
Q Consensus 518 ~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v 597 (618)
+|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...++.+
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT-SCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC-CCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999 5799999999999999999999999999999
Q ss_pred CHHHHHHHhh
Q 007090 598 SMELMDLAMK 607 (618)
Q Consensus 598 ~~~l~~~~~~ 607 (618)
|+.|.++|..
T Consensus 173 ~~~l~~~a~~ 182 (185)
T 2jgn_A 173 PSWLENMAYE 182 (185)
T ss_dssp CHHHHHHHC-
T ss_pred CHHHHHHHHH
Confidence 9999999864
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=9e-26 Score=252.81 Aligned_cols=174 Identities=20% Similarity=0.305 Sum_probs=134.1
Q ss_pred CCccEEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEEcCCCcccHHHHHHhcCCCC-CCCcEEEEcCCh
Q 007090 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~ 480 (618)
..+|+++||||+++..... ....+...+...+...+. +. +.....+...++..+.... .+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL----ID-VRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE----EE-EECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe----EE-EecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4689999999998653221 122222222211111111 11 1122345555655555443 356999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCC-----CCCHHHHH
Q 007090 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (618)
Q Consensus 481 ~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~-----p~~~~~y~ 555 (618)
..++.++..|...|+.+..+||++++.+|..+++.|+.|++.|||||+++++|+|+|++++||+++. |.+...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHhhcccCCCCCeEEEEEecCccHHHHHHH
Q 007090 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (618)
Q Consensus 556 Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i 586 (618)
||+||+||.+ .|.|++|+++.+..+...|
T Consensus 536 Qr~GRagR~~--~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARNA--EGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTST--TCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCCC--CCEEEEEEeCCCHHHHHHH
Confidence 9999999985 7999999999776554433
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=207.58 Aligned_cols=155 Identities=28% Similarity=0.480 Sum_probs=137.3
Q ss_pred cccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007090 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (618)
Q Consensus 439 ~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~ 518 (618)
....+.|.+..++....|...|..++... ..+++||||+++..+..++..|...|+.+..+||++++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 35578899998877666999998888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecccccccCCcCCccEEEEcCCC------CCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHH
Q 007090 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (618)
Q Consensus 519 g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p------~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~ 592 (618)
|..+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG-KKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC-CCceEEEEEccchHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 89999999999999999 67999999999998888888877755
Q ss_pred cCC
Q 007090 593 AGQ 595 (618)
Q Consensus 593 ~~~ 595 (618)
...
T Consensus 162 ~~~ 164 (175)
T 2rb4_A 162 SIK 164 (175)
T ss_dssp CCE
T ss_pred ccc
Confidence 443
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=5e-25 Score=203.43 Aligned_cols=151 Identities=33% Similarity=0.599 Sum_probs=137.3
Q ss_pred ccccceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 007090 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (618)
Q Consensus 438 ~~~~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~ 517 (618)
....++.|.+..+. ...|...|..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34556888888775 467888888877653 4579999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHH
Q 007090 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (618)
Q Consensus 518 ~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~ 591 (618)
+|..+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+..++..+.+.+.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG-NKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT-CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC-CCceEEEEecHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999 5799999999999999998887764
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=6.7e-26 Score=209.79 Aligned_cols=158 Identities=27% Similarity=0.479 Sum_probs=138.6
Q ss_pred ceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007090 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (618)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~ 521 (618)
.+.|.+..+.....|...|..++... ..+++||||++...++.++..|...++.+..+||++++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 56788888876655888888887654 46799999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcCCCCCHHH
Q 007090 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601 (618)
Q Consensus 522 ~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~~~v~~~l 601 (618)
+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.+|..+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC-CCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 99999999999999999999999999999999999999999999 57999999999999999999888777766666543
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=5e-25 Score=205.16 Aligned_cols=158 Identities=26% Similarity=0.426 Sum_probs=139.3
Q ss_pred cceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007090 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520 (618)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~ 520 (618)
..+.|.+..+. ...|...|..++... ..+++||||++...++.++..|...++.+..+||++++.+|..+++.|++|.
T Consensus 4 ~~i~q~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLK-DNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECC-GGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECC-hHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46778887775 467888888887654 4579999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCc-cHHHHHHHHHHHHHcCCCCCH
Q 007090 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSM 599 (618)
Q Consensus 521 ~~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~-d~~~~~~i~~~l~~~~~~v~~ 599 (618)
.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++. +...+..+.+.+......+|.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGG-CCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCC-CCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999 579999999986 567788888887766667776
Q ss_pred HH
Q 007090 600 EL 601 (618)
Q Consensus 600 ~l 601 (618)
.+
T Consensus 161 ~~ 162 (172)
T 1t5i_A 161 EI 162 (172)
T ss_dssp --
T ss_pred hh
Confidence 64
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=5.5e-24 Score=205.13 Aligned_cols=141 Identities=35% Similarity=0.478 Sum_probs=128.4
Q ss_pred CCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 007090 452 SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (618)
Q Consensus 452 ~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 531 (618)
....|+..|..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|..+|||||++++
T Consensus 14 ~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 3467888888877643 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcC
Q 007090 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594 (618)
Q Consensus 532 ~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~ 594 (618)
+|+|+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...-
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC---BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC-CCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999999999999999 5799999999999999988888776543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=3.3e-23 Score=209.14 Aligned_cols=148 Identities=34% Similarity=0.469 Sum_probs=129.7
Q ss_pred eeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 007090 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (618)
Q Consensus 443 i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~ 522 (618)
+.+.+..+. ...|+..|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+
T Consensus 3 v~~~~i~~~-~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAP-VRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECC-SSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECC-HHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 355555554 467888888887654 378999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHc
Q 007090 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (618)
Q Consensus 523 VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~ 593 (618)
|||||+++++|+|||++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g-~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCC-CCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999 579999999999999888888876654
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=201.34 Aligned_cols=166 Identities=23% Similarity=0.205 Sum_probs=122.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHH-HHHHHHHHH
Q 007090 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ-IYLETKKFA 322 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q-~~~~~~~~~ 322 (618)
....|+++|.++++.++.++++++++|||+|||++++++++.++..... ...++++||++||++|+.| |.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999999998877643210 1236789999999999999 888888887
Q ss_pred hhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccc------cccCceeEEEecchhhhhcCCChHHHHHH
Q 007090 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA------LTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~------~~l~~~~~iIvDEah~~~~~~~~~~i~~i 396 (618)
.. ++++..+.|+.........+..+++|+|+||+.|...+.... ..+..+++|||||||++...++...+...
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 64 678888888766554444555679999999999999887643 55788999999999999877666666433
Q ss_pred HHhcC--------------CCccEEEEecc
Q 007090 397 VGQIR--------------PDRQTLLFSAT 412 (618)
Q Consensus 397 ~~~~~--------------~~~q~i~~SAT 412 (618)
+.... +..++++||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 22111 67899999998
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=4.5e-22 Score=218.51 Aligned_cols=299 Identities=17% Similarity=0.217 Sum_probs=169.2
Q ss_pred CCCCCcHHHHHHHH----HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 244 GYEKPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~----~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
|+ .|+|+|.+++. .+..++++++.+|||+|||++|++|++.+ ++++||++||++|+.|+.+++.
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 45 79999999865 45688999999999999999999998765 6789999999999999998877
Q ss_pred HHHhhcCceEEEEECCCCh--------H------------------------HHH---------------HHHHcCCcEE
Q 007090 320 KFAKSHGIRVSAVYGGMSK--------L------------------------DQF---------------KELKAGCEIV 352 (618)
Q Consensus 320 ~~~~~~~~~~~~~~gg~~~--------~------------------------~~~---------------~~l~~~~dIi 352 (618)
++ ++++..+.|.... . +.+ +....+++||
T Consensus 73 ~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GG----TCCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 74 4554444332110 0 000 1112357999
Q ss_pred EeChHHHHHHHHcccc-------ccCceeEEEecchhhhhcCC-------ChH---------------------------
Q 007090 353 IATPGRLIDMLKMKAL-------TMSRVTYLVLDEADRMFDLG-------FEP--------------------------- 391 (618)
Q Consensus 353 v~Tp~~L~~~l~~~~~-------~l~~~~~iIvDEah~~~~~~-------~~~--------------------------- 391 (618)
|+||..|.+....... .+....++||||||+|.+.. ...
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 228 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYI 228 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999875543332 24678899999999883210 000
Q ss_pred -------------------------------HHHHHHHh-----------------------------------cCCC--
Q 007090 392 -------------------------------QIRSIVGQ-----------------------------------IRPD-- 403 (618)
Q Consensus 392 -------------------------------~i~~i~~~-----------------------------------~~~~-- 403 (618)
.+..++.. +.|.
T Consensus 229 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~ 308 (540)
T 2vl7_A 229 NLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDV 308 (540)
T ss_dssp HHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCH
T ss_pred HHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHH
Confidence 00000000 0000
Q ss_pred -------cc----EEEEeccccHHHHHHHHHHcCCCeEEEEcCccccccceeEEEEE--cCCCcccH----HHHHHhcCC
Q 007090 404 -------RQ----TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV--IPSDAEKL----PWLLEKLPG 466 (618)
Q Consensus 404 -------~q----~i~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~q~~~~--~~~~~~k~----~~l~~~l~~ 466 (618)
+. +|++|||+++.+. +...| ...+... . ...+.+.. ++++.... ..+...|..
T Consensus 309 ~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~~~-~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~ 378 (540)
T 2vl7_A 309 NQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVNES-Y---GRGEYYYCPNVTSELRKRNSNIPIYSILLKR 378 (540)
T ss_dssp HHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECCCC-----CCCEEEECTTCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchhhe-e---cCCcceeccccCCCcccccCHHHHHHHHHHH
Confidence 11 3666777665100 00001 0010000 0 00111111 22222111 223232222
Q ss_pred C--CCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEE--ecccccccCCcCC----
Q 007090 467 M--IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDIKS---- 538 (618)
Q Consensus 467 ~--~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLV--aT~~~~~Gldi~~---- 538 (618)
. ..++++|||++|+..++.++..|.. +. ..++|.. .+|.++++.|+.|. .||+ +|..+++|+|+|+
T Consensus 379 ~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 379 IYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 1 1367999999999999999998865 23 4556654 46888999999864 5666 8899999999998
Q ss_pred ccEEEEcCCCCCH------------------------------HHHHHHHhhcccCCCCCeEEEEE
Q 007090 539 IKSVVNFDIARDM------------------------------DMHVHRIGRTGRAGDKDGTAYTL 574 (618)
Q Consensus 539 v~~VI~~~~p~~~------------------------------~~y~Qr~GR~gR~g~~~g~~~~l 574 (618)
+++||++++|... ....|.+||+.|..+..|.++.+
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 8999999988521 12249999999987445654443
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=1.3e-24 Score=202.14 Aligned_cols=150 Identities=34% Similarity=0.496 Sum_probs=133.7
Q ss_pred ceeEEEEEcCCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007090 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (618)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~ 521 (618)
++.|.+..++....|...|..++... ..+++||||++...++.++..|...++.+..+||++++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45666666655467888887777653 45689999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHc
Q 007090 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (618)
Q Consensus 522 ~VLVaT~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~ 593 (618)
+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.| +.|.|+++++..+...+..+.+.+...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999999999 579999999999988888887766543
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=191.44 Aligned_cols=172 Identities=18% Similarity=0.196 Sum_probs=128.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 244 ~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
....++++|.++++.+..|++++++|+||||||+++.++++.+...... ..++++++++||++++.|+.+.+.....
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 3445789999999999999999999999999999988888887765421 2356899999999999999888876543
Q ss_pred h-cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh-hcCCChH-HHHHHHHhc
Q 007090 324 S-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFEP-QIRSIVGQI 400 (618)
Q Consensus 324 ~-~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~-~~~~~~~-~i~~i~~~~ 400 (618)
. .+..+.......... ...+++|+||||++|.+.+.. .+..+++|||||||++ ++++|.. .+..++..
T Consensus 135 ~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~- 205 (235)
T 3llm_A 135 EEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA- 205 (235)
T ss_dssp CCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH-
T ss_pred cccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh-
Confidence 2 234444333222110 013588999999999999865 4789999999999985 6676664 44455544
Q ss_pred CCCccEEEEeccccHHHHHHHHHHcCCCe
Q 007090 401 RPDRQTLLFSATMPRKVEKLAREILSDPV 429 (618)
Q Consensus 401 ~~~~q~i~~SAT~~~~~~~l~~~~~~~~~ 429 (618)
.+++|+++||||++... +.+.+.+.|+
T Consensus 206 ~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 206 YPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp CTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred CCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 46899999999999775 5555555554
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=8.3e-20 Score=201.26 Aligned_cols=307 Identities=17% Similarity=0.128 Sum_probs=195.5
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 247 ~~~~~Q~~~i~~----i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
.++|.|.+.+.. +..++++++.+|||+|||++|++|++.. ++++||++||++|+.|+.+++.++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999997764 5588999999999999999999999872 6789999999999999999999887
Q ss_pred hhcCceEEEEECCCC---------------------------------hHHHH------------------HHHHcCCcE
Q 007090 323 KSHGIRVSAVYGGMS---------------------------------KLDQF------------------KELKAGCEI 351 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~---------------------------------~~~~~------------------~~l~~~~dI 351 (618)
...++++..+.|..+ ..... +....+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 666788877766321 11221 223356899
Q ss_pred EEeChHHHHHHHHcccccc-CceeEEEecchhhhhcCC------------------------------------------
Q 007090 352 VIATPGRLIDMLKMKALTM-SRVTYLVLDEADRMFDLG------------------------------------------ 388 (618)
Q Consensus 352 iv~Tp~~L~~~l~~~~~~l-~~~~~iIvDEah~~~~~~------------------------------------------ 388 (618)
||+||..|.+...+....+ ....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998754443333 4678999999998754 1
Q ss_pred -------------ChHHHHHH----------------------------HH----------------------------h
Q 007090 389 -------------FEPQIRSI----------------------------VG----------------------------Q 399 (618)
Q Consensus 389 -------------~~~~i~~i----------------------------~~----------------------------~ 399 (618)
+...+..+ +. .
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00011000 00 0
Q ss_pred cCCC-ccEEEEeccccHHHHHHHHHHcCC-CeEEE--EcCccccccceeEEEEEcC----CCcc-----cHHHHHHhcCC
Q 007090 400 IRPD-RQTLLFSATMPRKVEKLAREILSD-PVRVT--VGEVGMANEDITQVVHVIP----SDAE-----KLPWLLEKLPG 466 (618)
Q Consensus 400 ~~~~-~q~i~~SAT~~~~~~~l~~~~~~~-~~~i~--~~~~~~~~~~i~q~~~~~~----~~~~-----k~~~l~~~l~~ 466 (618)
+... +.+|++|||+.+ ...+...+... +.... ....+.... .+...+++ .... -...+.+.+..
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~--~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVS--GSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCS--CEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCC--CceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 1122 688999999987 33344433222 22110 001111111 22222221 1111 12333333332
Q ss_pred CC--CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec--ccccccCCcC---C-
Q 007090 467 MI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT--DVAARGLDIK---S- 538 (618)
Q Consensus 467 ~~--~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT--~~~~~Gldi~---~- 538 (618)
.. .+|++|||++|+..+..++.. .+..+..-..+++ +...++.|+.....||++| ..+.+|+|++ +
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 21 368999999999999999973 3444433223444 3556777754445899998 6899999999 4
Q ss_pred -ccEEEEcCCCCC---H----------------HH---H--------HHHHhhcccCCCCCeEEEEE
Q 007090 539 -IKSVVNFDIARD---M----------------DM---H--------VHRIGRTGRAGDKDGTAYTL 574 (618)
Q Consensus 539 -v~~VI~~~~p~~---~----------------~~---y--------~Qr~GR~gR~g~~~g~~~~l 574 (618)
++.||+.++|.. + .. | .|.+||+-|..+..|.++.+
T Consensus 462 ~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 462 LISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp SEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred ceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEe
Confidence 889998887651 1 11 1 39999999987444544443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=9.7e-22 Score=198.35 Aligned_cols=155 Identities=19% Similarity=0.117 Sum_probs=126.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+|+|.++++.++.+++.+++++||+|||+++++++..++.. ...++||++||++|+.||.+++.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 37999999999999988899999999999999998887766532 13479999999999999999999997655
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q 405 (618)
...+..+++|..... ....+++|+|+||+.+... ....+..+++|||||||++.+ ..+..++..+.+.++
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 667788888765532 1224689999999887543 233567899999999999763 477888888888999
Q ss_pred EEEEeccccHHH
Q 007090 406 TLLFSATMPRKV 417 (618)
Q Consensus 406 ~i~~SAT~~~~~ 417 (618)
+++||||+++..
T Consensus 255 ~l~lSATp~~~~ 266 (282)
T 1rif_A 255 KFGLSGSLRDGK 266 (282)
T ss_dssp EEEECSSCCTTS
T ss_pred EEEEeCCCCCcc
Confidence 999999998654
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=1.8e-18 Score=192.14 Aligned_cols=313 Identities=16% Similarity=0.157 Sum_probs=191.4
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHH
Q 007090 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (618)
Q Consensus 247 ~~~~~Q~~~i~----~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~ 322 (618)
+|+|.|.+.+. .+.+++++++.+|||+|||++|++|++.++.. .+++++|++||++++.|+.+++.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 68999998875 46689999999999999999999999998754 26789999999999999999999998
Q ss_pred hhcCceEEEEECCCC----hH-----------H---HHHH----------------------------------------
Q 007090 323 KSHGIRVSAVYGGMS----KL-----------D---QFKE---------------------------------------- 344 (618)
Q Consensus 323 ~~~~~~~~~~~gg~~----~~-----------~---~~~~---------------------------------------- 344 (618)
...++++..+.|+.+ .. . .+..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 766777766555321 00 0 1111
Q ss_pred ----------------HHcCCcEEEeChHHHHHHHHccc----c-ccCceeEEEecchhhhhc-----------------
Q 007090 345 ----------------LKAGCEIVIATPGRLIDMLKMKA----L-TMSRVTYLVLDEADRMFD----------------- 386 (618)
Q Consensus 345 ----------------l~~~~dIiv~Tp~~L~~~l~~~~----~-~l~~~~~iIvDEah~~~~----------------- 386 (618)
....+||||+++..|.+..-+.. . ....-.++||||||++.+
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 11128999999988765442221 1 123557999999998722
Q ss_pred ---------CCC------h----H---------------------------------------HHHHH-------HH---
Q 007090 387 ---------LGF------E----P---------------------------------------QIRSI-------VG--- 398 (618)
Q Consensus 387 ---------~~~------~----~---------------------------------------~i~~i-------~~--- 398 (618)
..+ . . .+..+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 00000 00
Q ss_pred ----------------------h---cC------------------------------CCccEEEEeccccHHHHHHHHH
Q 007090 399 ----------------------Q---IR------------------------------PDRQTLLFSATMPRKVEKLARE 423 (618)
Q Consensus 399 ----------------------~---~~------------------------------~~~q~i~~SAT~~~~~~~l~~~ 423 (618)
. .. ..+.+|++|||+.+ ...+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01245899999987 4444444
Q ss_pred HcCCCeEEEEcCccccccceeEEEEEcCCCc--------ccHHHHHHhcCCCC--CCCcEEEEcCChhHHHHHHHHHHhC
Q 007090 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDA--------EKLPWLLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK 493 (618)
Q Consensus 424 ~~~~~~~i~~~~~~~~~~~i~q~~~~~~~~~--------~k~~~l~~~l~~~~--~~~~vLVF~~~~~~~~~l~~~L~~~ 493 (618)
.......+.++..- ...+ +...+..... .-...+.+.|.... .+|++|||++|+..+..++..|+
T Consensus 395 lGl~~~~~~~~spf-~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-- 469 (620)
T 4a15_A 395 TGFEIPFKKIGEIF-PPEN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-- 469 (620)
T ss_dssp HCCCCCEEECCCCS-CGGG--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--
T ss_pred hCCCceeeecCCCC-CHHH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--
Confidence 33222233322211 1111 2121211111 11222333222221 37899999999999999999887
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec--ccccccCCcCC--ccEEEEcCCCCC-------------------
Q 007090 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT--DVAARGLDIKS--IKSVVNFDIARD------------------- 550 (618)
Q Consensus 494 ~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT--~~~~~Gldi~~--v~~VI~~~~p~~------------------- 550 (618)
.+... ..-+++..++..+++.|+ +...||++| ..+++|+|+++ ++.||+.++|..
T Consensus 470 ~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 470 FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 23222 444455668999999999 888999997 48999999997 789999988752
Q ss_pred HHH--H--------HHHHhhcccCCCCCeEEEEE
Q 007090 551 MDM--H--------VHRIGRTGRAGDKDGTAYTL 574 (618)
Q Consensus 551 ~~~--y--------~Qr~GR~gR~g~~~g~~~~l 574 (618)
.-. | .|.+||+-|.-+..|.++.+
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 111 2 49999999987555665554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=2.1e-18 Score=168.97 Aligned_cols=139 Identities=22% Similarity=0.148 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+++|.++++.++.+++++++++||+|||.+++.++... +.++||++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 57999999999999999999999999999999877765432 456999999999999999988884
Q ss_pred Cce-EEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 326 ~~~-~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
++. +..+.|+... ..+|+|+||+.+...... ....+++|||||||++.+..+ ..++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTC-CCS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhc-cCC
Confidence 677 6666665542 579999999998776542 234689999999999876543 3344444 467
Q ss_pred cEEEEeccccHH
Q 007090 405 QTLLFSATMPRK 416 (618)
Q Consensus 405 q~i~~SAT~~~~ 416 (618)
++++||||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999999764
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=1.3e-18 Score=173.50 Aligned_cols=127 Identities=15% Similarity=0.270 Sum_probs=101.2
Q ss_pred CCcccHHHHHHhcCCCC-CCCcEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcC-Cce-EEEec
Q 007090 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIAT 527 (618)
Q Consensus 452 ~~~~k~~~l~~~l~~~~-~~~~vLVF~~~~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~r~~~~~~F~~g-~~~-VLVaT 527 (618)
..+.|+..|.++|.... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| ... +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 45678888888876543 3569999999999999999999885 99999999999999999999999998 666 78899
Q ss_pred ccccccCCcCCccEEEEcCCCCCHHHHHHHHhhcccCCCC-CeEEEEEecCc
Q 007090 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (618)
Q Consensus 528 ~~~~~Gldi~~v~~VI~~~~p~~~~~y~Qr~GR~gR~g~~-~g~~~~l~~~~ 578 (618)
+++++|+|++++++||+||+|||+..|.||+||++|.|++ +..+|.|++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999943 45678888875
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.83 E-value=5e-09 Score=116.18 Aligned_cols=144 Identities=20% Similarity=0.244 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHH--HHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKT--AAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
++.|+.+++.++.++.+++.|++|+||| +.++++++..+. ...+.++++++||..+|.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA------DGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999 445555554431 12356899999999999999988887766554
Q ss_pred ceEEEEECCCChHHHHHHHHcCCc-EEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCcc
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCE-IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~d-Iiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q 405 (618)
+..... .+... . ....+ ++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|
T Consensus 225 l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 225 LTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp CCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCE
T ss_pred CCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCE
Confidence 321110 00000 0 00011 111222211 1 11111222378999999999 443 4567788888988899
Q ss_pred EEEEec
Q 007090 406 TLLFSA 411 (618)
Q Consensus 406 ~i~~SA 411 (618)
++++.-
T Consensus 292 liLvGD 297 (608)
T 1w36_D 292 VIFLGD 297 (608)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 988853
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.29 E-value=1.7e-06 Score=86.26 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=88.9
Q ss_pred CcccHHHHHHhcCCCCC-CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEeccccc
Q 007090 453 DAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (618)
Q Consensus 453 ~~~k~~~l~~~l~~~~~-~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~ 531 (618)
.+.|+..|-.+|..... +.+||||++.....+.+..+|...++.+..+.|.....++. -.++...|.+.|..++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 46787777666655443 44999999999999999999999999999999986543221 1245566666677666
Q ss_pred ccCC-----cCCccEEEEcCCCCCHHHH-HHHHhhcccCC---CCCeEEEEEecCcc
Q 007090 532 RGLD-----IKSIKSVVNFDIARDMDMH-VHRIGRTGRAG---DKDGTAYTLVTQKE 579 (618)
Q Consensus 532 ~Gld-----i~~v~~VI~~~~p~~~~~y-~Qr~GR~gR~g---~~~g~~~~l~~~~d 579 (618)
-|+| +.+++.||.||..||+..= +|++-|++|.| .+.-.+|+|++..-
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6675 7889999999999999885 99999999984 24567999998653
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.27 E-value=1.9e-06 Score=96.47 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHhcCC-cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 246 EKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~-dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
..|++-|.+|+..+++.+ -.|+.||+|+|||.+ ++.++.+++.. +.++|+++||...+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999988766 468899999999976 45555666543 678999999999999998877554
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.24 E-value=1.1e-05 Score=89.60 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
...+++.|..++..++.+.-+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999888899999999999975 34455555432 3567999999999999988777654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.5e-05 Score=90.61 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
+..+++.|.+++..++.+.-+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999999888889999999999975 34444444331 2567999999999999998888764
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.09 E-value=1.4e-05 Score=87.67 Aligned_cols=121 Identities=22% Similarity=0.275 Sum_probs=79.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..+++.|+.++..++.++.+++.|++|+|||.+ +..++..+.. .+.++++++||...+..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 468999999999999999999999999999975 2333333322 2677999999999988765432
Q ss_pred CceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHH----HHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcC
Q 007090 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM----LKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (618)
Q Consensus 326 ~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~----l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~ 401 (618)
+.... |..+++.. +.........+++||||||+.+- ...+..++..++
T Consensus 253 ~~~a~------------------------Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 253 GRTAS------------------------TVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp TSCEE------------------------EHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred cccHH------------------------HHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 11111 11111100 01111233467899999999643 346667777777
Q ss_pred CCccEEEE
Q 007090 402 PDRQTLLF 409 (618)
Q Consensus 402 ~~~q~i~~ 409 (618)
...+++++
T Consensus 305 ~~~~lilv 312 (574)
T 3e1s_A 305 PGARVLLV 312 (574)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 66666665
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.09 E-value=2.4e-05 Score=88.88 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 245 ~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
...+++.|.+++..++.+.-+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4568999999999999888899999999999975 34455555432 2567999999999999988777653
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.04 E-value=1.6e-05 Score=84.98 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=50.5
Q ss_pred CCCCCCcHHHHHHHHHHhcC-----CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHH
Q 007090 243 QGYEKPTSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (618)
Q Consensus 243 ~~~~~~~~~Q~~~i~~i~~~-----~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~ 317 (618)
..+..|++-|++++..++.. ..+++.|+.|+|||.+ +..++.++.... ...+++++||...|..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 35688999999999876532 3899999999999964 344555554431 23689999999888766544
Q ss_pred H
Q 007090 318 T 318 (618)
Q Consensus 318 ~ 318 (618)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 3
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.00 E-value=0.00013 Score=81.54 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..|++-|.+++. .....+++.|+.|||||.+ ++.-+.+++.... ....++|++++|+.++.++.+.+.+..+
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHH-HHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHH-HHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 578999999996 3467899999999999986 3444455554321 1124699999999999999999988754
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.42 E-value=0.0012 Score=68.22 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+... .+..+++++||+..|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 68999999998776567789999999999987666555544432 2667999999999999888888877654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.95 E-value=0.013 Score=64.49 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=58.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhc
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~ 325 (618)
..|+|+|+..+..+...+-+++..+-|+|||.+....++..+... .+..+++++|++..|..+...+..+....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 368999999998776677899999999999987665555555433 25679999999999999988888876543
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.70 E-value=0.0079 Score=55.37 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=26.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr 308 (618)
.++-.++.|++|+|||+..+ -++..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll-~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL-SFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH-HHHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEeecc
Confidence 35667899999999997643 33333322 256789988873
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.53 E-value=0.0049 Score=57.08 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=26.7
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr 308 (618)
|+-.++.|++|+|||+..+- ++.+.. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~-------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAK-------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHH-------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHH-------HCCCEEEEEEecc
Confidence 45678899999999976443 333332 2367799999873
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.49 E-value=0.0063 Score=55.60 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEeCCCCcHHHH
Q 007090 249 TSIQCQALPIIL---------SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 249 ~~~Q~~~i~~i~---------~~~dvl~~~~TGsGKT~~ 278 (618)
.+.|..++..+. .++.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 455666665543 468899999999999964
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.45 E-value=0.0055 Score=63.99 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=61.3
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 342 (618)
+-.++.|+.|+|||.. +..++.. ...+|++||++++..|.+.+.+. +..
T Consensus 162 ~v~~I~G~aGsGKTt~-----I~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~----~~~-------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKE-----ILSRVNF--------EEDLILVPGRQAAEMIRRRANAS----GII-------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHH-----HHHHCCT--------TTCEEEESCHHHHHHHHHHHTTT----SCC--------------
T ss_pred cEEEEEcCCCCCHHHH-----HHHHhcc--------CCeEEEeCCHHHHHHHHHHhhhc----Ccc--------------
Confidence 4568899999999975 2222221 23699999999998887665332 110
Q ss_pred HHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 343 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
.....-|.|.++++.. ........+++||||||-. +.. ..+..++..+++ .+++++.
T Consensus 211 ----~~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm-~~~---~~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLM-LHT---GCVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp ----CCCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGG-SCH---HHHHHHHHHTTC-SEEEEEE
T ss_pred ----ccccceEEEeHHhhcC--CCCCCCCcCCEEEEeCccc-CCH---HHHHHHHHhCCC-CEEEEec
Confidence 0112336777765432 1121122478999999984 322 334444444444 4445443
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.20 E-value=0.0047 Score=57.90 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=26.7
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 309 (618)
|+-.++++++|+|||+..+-.+.++. ..+.+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~--------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ--------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCEEEEEEeccC
Confidence 34457899999999986544444442 23677999999753
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.01 E-value=0.0024 Score=56.62 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=24.5
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCC-ccEEEEecc
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~-~q~i~~SAT 412 (618)
.+.+++||||++.+.... ...+..+++.+... ..++++|+.
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEES
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECC
Confidence 457899999999754333 44555666655433 332445554
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.98 E-value=0.0083 Score=56.95 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=50.7
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|++|+|||++. +-++..+.. .+.+++++.|...-- ....++...|+. .
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~-------~g~kVli~~~~~d~r-----~~~~i~srlG~~---------~-- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEY-------ADVKYLVFKPKIDTR-----SIRNIQSRTGTS---------L-- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEECCCGG-----GCSSCCCCCCCS---------S--
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHh-------cCCEEEEEEeccCch-----HHHHHHHhcCCC---------c--
Confidence 4556788999999999864 333333322 256788887753210 000111111211 0
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhh
Q 007090 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~ 384 (618)
..+-+.+...+...+... ..-..+++|||||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 123356666676666432 22345899999999964
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.80 E-value=0.0093 Score=56.45 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=28.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr 308 (618)
.|+-.+++|++|+|||...+-.+.++. ..+.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCeEEEEeecC
Confidence 456678899999999986544444442 2367799998864
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.79 E-value=0.028 Score=56.62 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999964
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.61 E-value=0.036 Score=57.94 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE-cc-cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl-~P-tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
+-++++|++|+|||++.. .|...+.. .+.+|+++ ++ .|..+ .+.+..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~--kLA~~l~~------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG--KLAYFYKK------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHH--HHHHHHHH------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----
T ss_pred eEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----
Confidence 467889999999997532 23333221 24556554 34 33333 2334445444455433221111
Q ss_pred HHHHHHcCCcEEEeChHHHH-HHHHccccccCceeEEEecchhhhh---cCCChHHHHHHHHhcCCCccEEEEeccccHH
Q 007090 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMF---DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~-~~l~~~~~~l~~~~~iIvDEah~~~---~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 416 (618)
.|..+. ..+. ......+++||||.+-++. +..+...+..+...+.+..-+++++|+....
T Consensus 163 --------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 --------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 122221 1121 1123478899999998643 2334556667777777887788888887655
Q ss_pred HHHHHHHHc
Q 007090 417 VEKLAREIL 425 (618)
Q Consensus 417 ~~~l~~~~~ 425 (618)
....+..|.
T Consensus 227 a~~~a~~f~ 235 (433)
T 3kl4_A 227 AYDLASRFH 235 (433)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555553
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.60 E-value=0.027 Score=63.47 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..|++-|++++.. ....+++.|..|||||.+. ..-+.+++.... -....+|+|+.|+.+|.++.+.+.++.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL-~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL-THRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH-HHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 5689999999864 4578999999999999863 334445543211 1234699999999999999999888754
No 116
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.58 E-value=0.14 Score=49.85 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..+++.||+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5799999999999975
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.55 E-value=0.061 Score=49.80 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=14.6
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+.++++|++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999974
No 118
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.31 E-value=0.016 Score=64.83 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
.|++-|++++.. .+..+++.|..|||||.+.+ .-+.+++... ......+|+|+.|+.+|.++.+.+.+..+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~-~ri~~ll~~~---~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVIT-NKIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHH-HHHHHHHHHH---CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHH-HHHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999864 36789999999999998633 3334443321 01235699999999999999999888754
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.067 Score=53.53 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.++++.||+|+|||++
T Consensus 44 ~~~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL 61 (318)
T ss_dssp CCCEEEEECCCSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346899999999999975
No 120
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.19 E-value=0.17 Score=45.50 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
...+++.|++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999964
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.09 E-value=0.028 Score=52.51 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=26.9
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 309 (618)
.|.-.++++++|+|||+.. +-.+.+... .+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~~-------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGIY-------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCceEEEEeccC
Confidence 4556789999999999753 333333322 2567899999653
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.08 E-value=0.044 Score=60.16 Aligned_cols=112 Identities=23% Similarity=0.355 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhh
Q 007090 247 KPTSIQCQALPIILS--GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (618)
Q Consensus 247 ~~~~~Q~~~i~~i~~--~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~ 324 (618)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+. ..++|++|+...+..+ ..+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~----------~~~~vtAP~~~a~~~l----~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA----------GRAIVTAPAKASTDVL----AQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS----------SCEEEECSSCCSCHHH----HHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH----------hCcEEECCCHHHHHHH----HHHhhC
Confidence 689999999988886 34578999999999964322 233321 1269999998877543 333221
Q ss_pred cCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhcCCCc
Q 007090 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (618)
Q Consensus 325 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~ 404 (618)
.|-+..|..+.. .+...++||||||=.+- .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 144556755331 23458999999999754 55666666643
Q ss_pred cEEEEeccc
Q 007090 405 QTLLFSATM 413 (618)
Q Consensus 405 q~i~~SAT~ 413 (618)
..++||.|.
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 257888886
No 123
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.08 E-value=0.042 Score=65.75 Aligned_cols=74 Identities=26% Similarity=0.212 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 246 ~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
.++|+-|.+++.. .++++++.|..|||||.+.+--++..+..... .....++|++++|+..|..+.+.+.....
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 4689999999864 37899999999999998754444444443210 11234699999999999999999887553
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.79 E-value=0.058 Score=55.36 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+..+++.||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 346899999999999974
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.57 E-value=0.27 Score=44.35 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.|++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 36799999999999974
No 126
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.55 E-value=0.053 Score=49.89 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=26.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt 307 (618)
.++=.++.|++|+|||.- ++-++.+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH-------cCCeEEEEccc
Confidence 456678899999999964 3444444322 25678999886
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.53 E-value=0.12 Score=54.52 Aligned_cols=41 Identities=15% Similarity=0.378 Sum_probs=24.1
Q ss_pred ceeEEEecchhhhhcC-CChHHHHHHHHhcC-CCccEEEEecc
Q 007090 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIR-PDRQTLLFSAT 412 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~-~~~~~i~~i~~~~~-~~~q~i~~SAT 412 (618)
..++|+|||+|.+... .....+..+++.+. ...++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5679999999997743 22334445555433 34555554443
No 128
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.53 E-value=0.21 Score=50.04 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=29.3
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCcEEEEeCCCCcHHHH
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-----~~~dvl~~~~TGsGKT~~ 278 (618)
|-.+|.++.-....++.+...-. .|. ..|.++ ..+.+++.||+|+|||+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 44678888766666666543210 000 001111 235799999999999975
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.43 E-value=0.18 Score=52.79 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=32.8
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEc--ccHHHHHHHHHHHHHHHhhcCceEE
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA--PTRELAHQIYLETKKFAKSHGIRVS 330 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~--Ptr~La~q~~~~~~~~~~~~~~~~~ 330 (618)
.-+++++++|+|||++.. -+..++.. .|.+++++. |.|..+ .+.+..++...++.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~-kLA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA-KLARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHH-HHHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEE
Confidence 467889999999997632 22333322 255566554 344444 3445556655566554
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.39 E-value=0.34 Score=44.51 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH-HHHHHHHHHHHHHhhcCceEEEEE-CCCChH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVY-GGMSKL 339 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~-La~q~~~~~~~~~~~~~~~~~~~~-gg~~~~ 339 (618)
...+++...+|.|||.+++-.++..+ +.|-+|+|+.=.+. ....=.+.+.++ ++.....- |.....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~ 95 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWET 95 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCC
Confidence 34788899999999998776666665 23777888832211 000000112222 33222111 111000
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCC--hHHHHHHHHhcCCCccEEEEeccccHHH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 417 (618)
+.... +.. .--..+.... ..+.-..+++||+||+-..+..++ ...+..++...+....+|+.+-.+|+.+
T Consensus 96 ~~~~~-----~~~-~a~~~l~~a~--~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 96 QNREA-----DTA-ACMAVWQHGK--RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp GGHHH-----HHH-HHHHHHHHHH--HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHH
T ss_pred CCcHH-----HHH-HHHHHHHHHH--HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHH
Confidence 00000 000 0011111111 122236799999999987665553 4556677765444444554445556555
Q ss_pred HHH
Q 007090 418 EKL 420 (618)
Q Consensus 418 ~~l 420 (618)
..+
T Consensus 168 ~e~ 170 (196)
T 1g5t_A 168 LDL 170 (196)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.24 E-value=0.14 Score=50.12 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=30.7
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHH--HhcCCcEEEEeCCCCcHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPI--ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~--i~~~~dvl~~~~TGsGKT~~ 278 (618)
.|-.+|.++.-....++.+...-. .+.+ ...+.. +...+.+++.||+|+|||..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 344678887766666665543210 0000 011111 12457899999999999964
No 132
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.08 E-value=0.32 Score=48.23 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=32.4
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHH--HHHHH-HhcCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC--QALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~--~~i~~-i~~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
|-.+|.++.-....++.+...- . .|... ..... +..++.+++.||+|+|||+. +-++...
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l--a~ala~~ 72 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL--AKAIANE 72 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH--HHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH--HHHHHHH
Confidence 4467888766666655554310 0 00000 00001 12457899999999999964 3344443
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.07 E-value=0.04 Score=52.36 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999964
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.96 E-value=0.25 Score=45.76 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=24.0
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
....+|||||+|.+... ....+..++........+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999986532 23445555555444454544443
No 135
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.91 E-value=0.17 Score=51.08 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHh----cCC---cEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 249 TSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 249 ~~~Q~~~i~~i~----~~~---dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.|+|..++..+. +++ .+++.||.|+|||... ..+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHh
Confidence 466666665443 444 3899999999999753 33334443
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.82 E-value=0.29 Score=50.06 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35699999999999975
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.64 E-value=0.27 Score=49.04 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=15.3
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++.+++.||+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57999999999999964
No 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.55 E-value=0.072 Score=52.97 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..+++.||+|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4799999999999975
No 139
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.43 E-value=0.12 Score=58.38 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=64.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cccccCCcCCccEEEE
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARGLDIKSIKSVVN 544 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~~Gldi~~v~~VI~ 544 (618)
+.+++|.+|+..-+...++.+.+ .++.+..+||+++..++...+..+.+|...|+|+|. .+...+.+.++..||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 56899999999888777777654 379999999999999999999999999999999995 5556778888888884
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.22 E-value=0.12 Score=51.88 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=24.7
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
....+|||||+|.+........+..++.......++|+.|.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999987522223445555555544555555433
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.20 E-value=0.19 Score=51.47 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.7
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.|++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999975
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.11 E-value=0.3 Score=49.77 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+..+++.|++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999974
No 143
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.68 E-value=0.87 Score=45.55 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=29.1
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHh-----cCCcEEEEeCCCCcHHHH
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALP----IIL-----SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~-----~~~dvl~~~~TGsGKT~~ 278 (618)
|-.+|.+++-...+++.|... -.+| .++ ..+.+++.||+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~----------v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEA----------VILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH----------HHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH----------HHHHHhCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 446788887666666555421 1111 111 226799999999999964
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.21 Score=51.44 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=32.2
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
.|-.+|++.+--....+.|... .+..|.-++.-. +..-+.+|+.||+|+|||+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 3567899987666666655432 111111112111 11237899999999999975
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.44 E-value=0.27 Score=49.85 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=27.5
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
.....++|+||+|. ++......+..++...++...+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999998 43434556667777766655555555543
No 146
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.17 E-value=0.21 Score=52.12 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=31.4
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
.|-.+|.+.+--....+.|... .+..|.-++... +-..+.+|+.||+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 4567899987666665555421 011111111111 11336899999999999975
No 147
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.16 E-value=0.31 Score=50.58 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=64.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc---ccCCcCCccE
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA---RGLDIKSIKS 541 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~---~Gldi~~v~~ 541 (618)
..+++||.+|++.-+..+++.++. .++.+..+||+.+..++...+..+..|...|+|+|. .+. .-+....+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 457899999999999999999988 588999999999999999899999999999999994 331 2255667888
Q ss_pred EEEc
Q 007090 542 VVNF 545 (618)
Q Consensus 542 VI~~ 545 (618)
||.=
T Consensus 143 iViD 146 (414)
T 3oiy_A 143 VFVD 146 (414)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8753
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.03 E-value=0.18 Score=52.77 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=33.0
Q ss_pred CccCCccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
.|-.+|.+.+--..+.+.|...= +..|.-++.-. +-.-+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 46688999987777766665321 11111111111 12347899999999999964
No 149
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.82 E-value=0.26 Score=50.20 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||+.
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999975
No 150
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.80 E-value=0.54 Score=47.24 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=14.5
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..+++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999975
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.67 E-value=3.1 Score=38.57 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.5
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.|++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999964
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.32 E-value=1.3 Score=41.93 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=29.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
.|.-+++.|++|+|||.. ++.++..+... +.+++++.-. ....++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl-~~~~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF-SQQFLWNGLKM-------GEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHH
Confidence 567789999999999974 33333443321 3446666432 22344444443
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.12 E-value=1.2 Score=44.08 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.6
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987532 2334555555544445455443
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.80 E-value=1.1 Score=47.30 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=54.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|++|+|||.. ++-+..++... .+..|+++..-- -..|+...+... ..++....+..|.-...
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~~~------~g~~Vl~~s~E~-s~~~l~~r~~~~--~~~~~~~~l~~g~l~~~ 271 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVATK------TNENVAIFSLEM-SAQQLVMRMLCA--EGNINAQNLRTGKLTPE 271 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHHHH------SSCCEEEEESSS-CHHHHHHHHHHH--HHTCCHHHHHTSCCCHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHh------CCCcEEEEECCC-CHHHHHHHHHHH--HcCCCHHHHhcCCCCHH
Confidence 556789999999999974 44444444321 143577765321 122333332211 01111100011111222
Q ss_pred HHHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhhcC
Q 007090 341 QFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (618)
Q Consensus 341 ~~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~ 387 (618)
.+..+. ....+.+. |.+.+...+..-. .-..+++||||+.+.|...
T Consensus 272 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 272 DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCS
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccC
Confidence 222111 12455553 4455544433211 1135889999999987643
No 155
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.63 E-value=1.3 Score=42.33 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999964
No 156
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.51 E-value=0.86 Score=47.86 Aligned_cols=115 Identities=23% Similarity=0.143 Sum_probs=55.3
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-++++|++|+|||. +++-+..++... .+..|+++..- .-..|+...+.... .++....+..|.-...
T Consensus 199 ~G~l~ii~G~pg~GKT~-lal~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~--~~i~~~~l~~g~l~~~ 268 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTA-FALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSE--ARIDMNRVRLGQLTDR 268 (444)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHH--TTCCTTTCCGGGCCHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhCCCCCHH
Confidence 45678999999999996 444444444321 14457776542 11234433332211 1221111111222222
Q ss_pred HHHHHH------cCCcEEEe-----ChHHHHHHHHccccccCceeEEEecchhhhhc
Q 007090 341 QFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (618)
Q Consensus 341 ~~~~l~------~~~dIiv~-----Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~ 386 (618)
.+..+. ....+.+. |+..+...+.+-. .-..+++||||..+.|..
T Consensus 269 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 269 DFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCC
Confidence 222221 12455553 3445544433211 112588999999998764
No 157
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.39 E-value=0.46 Score=47.91 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=24.6
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEec
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 411 (618)
....+|||||+|.+... ....+..++........+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999986532 23445556665555555555443
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.23 E-value=0.77 Score=47.27 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+|+.|++|+|||+.
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 47899999999999965
No 159
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.12 E-value=2.5 Score=38.57 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
++++||.|+++..+..+...+... ++.+..++|+.+..+.... +. ....|+|||. .+ ...+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~-~~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VA-SKGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HH-HTTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----ch-hcCCCcccC
Confidence 457999999999998887777665 8899999998876554332 22 3578999993 33 234567778
Q ss_pred eEEEe
Q 007090 374 TYLVL 378 (618)
Q Consensus 374 ~~iIv 378 (618)
++||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.11 E-value=0.76 Score=48.89 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=27.8
Q ss_pred eeEEEecchhhhhcCC----------ChHHHHHHHHhcCCCccEEEEeccccH
Q 007090 373 VTYLVLDEADRMFDLG----------FEPQIRSIVGQIRPDRQTLLFSATMPR 415 (618)
Q Consensus 373 ~~~iIvDEah~~~~~~----------~~~~i~~i~~~~~~~~q~i~~SAT~~~ 415 (618)
..+|+|||+|.+.... ....+...+..+.....++++.||..+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4689999999886531 113344555555566677888887654
No 161
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.90 E-value=2.2 Score=39.47 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=54.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----cccCCcCCc
Q 007090 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKSI 539 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~~Gldi~~v 539 (618)
.++||.+|++.-+..+++.+++. ++.+..++|+.+...+.. .+..+...|+|+|. .+ ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888887764 788999999998765543 34556778999994 22 234677788
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88885
No 162
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.85 E-value=0.51 Score=47.53 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=54.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|.-+++.|++|+|||.. ++-+..++.. .+..|+|+..- .-..|+...+..... ++....+..|.-...
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls~~ 113 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLDDD 113 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCCHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCCHH
Confidence 456789999999999974 4444444433 25567777542 223344433322211 111100111222222
Q ss_pred HHHHHH------cCCcEEE-eC----hHHHHHHHHccccccCceeEEEecchhhhh
Q 007090 341 QFKELK------AGCEIVI-AT----PGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (618)
Q Consensus 341 ~~~~l~------~~~dIiv-~T----p~~L~~~l~~~~~~l~~~~~iIvDEah~~~ 385 (618)
.+..+. ....+.| .+ +..|...+.+-......+.+||||-.+.|.
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhc
Confidence 222221 1244554 33 344444433211111168999999999764
No 163
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.60 E-value=1.5 Score=44.02 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=68.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEE-EEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vL-Il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
.+.-+.+.|++|+|||+. +..+..++.. .+.+++ +-+++...+. .+.+..+....++.+.....+....
T Consensus 128 ~g~vi~lvG~nGaGKTTl--l~~Lag~l~~------~~g~V~l~g~D~~r~~a--~eql~~~~~~~gv~~v~q~~~~~p~ 197 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT--IAKLANWLKN------HGFSVVIAASDTFRAGA--IEQLEEHAKRIGVKVIKHSYGADPA 197 (328)
T ss_dssp SSEEEEEECCTTSSHHHH--HHHHHHHHHH------TTCCEEEEEECCSSTTH--HHHHHHHHHHTTCEEECCCTTCCHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHHHh------cCCEEEEEeecccccch--HHHHHHHHHHcCceEEeccccCCHH
Confidence 456788999999999975 4444444321 133344 4445432111 1123333333465544333222221
Q ss_pred HHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhc-CCChHHHHHHHHhcCCCccEEEEeccccHHHH
Q 007090 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (618)
Q Consensus 340 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~ 418 (618)
.. ..+.+... ....++++++|.+-+... ......+..+...+.++..++++.++....+.
T Consensus 198 ~~-----------------v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~ 258 (328)
T 3e70_C 198 AV-----------------AYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIV 258 (328)
T ss_dssp HH-----------------HHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHH
T ss_pred HH-----------------HHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHH
Confidence 11 01111000 012355778888765321 22344555566666777778888888766666
Q ss_pred HHHHHHc
Q 007090 419 KLAREIL 425 (618)
Q Consensus 419 ~l~~~~~ 425 (618)
..++.+.
T Consensus 259 ~~~~~~~ 265 (328)
T 3e70_C 259 EQARQFN 265 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555553
No 164
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.32 E-value=0.62 Score=54.85 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=65.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc---ccCCcCCccE
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA---RGLDIKSIKS 541 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~---~Gldi~~v~~ 541 (618)
...++||.+|++.-+..+++.|+. .++.+..+||+++..+|...+..+..|...|||+|. .+. .-+++..+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 577999999999998888999999999999999994 332 1255678888
Q ss_pred EEEcC
Q 007090 542 VVNFD 546 (618)
Q Consensus 542 VI~~~ 546 (618)
||.=.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88633
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.10 E-value=0.5 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=16.9
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
..++++||+|+|||.. +-++...
T Consensus 51 ~~vLL~GppGtGKTtl--Ar~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL--AEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHH--HHHHHHH
T ss_pred cEEEEECCCCCcHHHH--HHHHHHH
Confidence 3699999999999965 3344443
No 166
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.63 E-value=0.89 Score=53.81 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=72.7
Q ss_pred EEEcCCCcccHHHHH-HhcCCCCCCCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCc
Q 007090 447 VHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVY 521 (618)
Q Consensus 447 ~~~~~~~~~k~~~l~-~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~ 521 (618)
....+....|....+ -.+.....+.++||.||+..-+...++.+.+ .++.+..+++..+..++...+..+..|..
T Consensus 628 ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~ 707 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 707 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 334445556654322 1111122356899999999888888777764 36789999999999999999999999999
Q ss_pred eEEEec-ccccccCCcCCccEEEE
Q 007090 522 HVLIAT-DVAARGLDIKSIKSVVN 544 (618)
Q Consensus 522 ~VLVaT-~~~~~Gldi~~v~~VI~ 544 (618)
.|+|+| ..+...+.+.++..||.
T Consensus 708 dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 708 DILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp SEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CEEEECHHHHhCCccccccceEEE
Confidence 999999 46666788888888774
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.59 E-value=2.4 Score=39.80 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.5
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+++.+++|+|||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 456789999999999975
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.48 E-value=1.1 Score=41.96 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+++.|++|+|||+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 457789999999999964
No 169
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.25 E-value=3.3 Score=38.72 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=53.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----cccCCcC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIK 537 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~~Gldi~ 537 (618)
...++||.+|++.-+..+++.+... ++.+..++|+.+..++...+ ....|+|+|. .+ ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999998888764 67899999999876654433 2578999994 22 1345677
Q ss_pred CccEEEE
Q 007090 538 SIKSVVN 544 (618)
Q Consensus 538 ~v~~VI~ 544 (618)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777774
No 170
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.15 E-value=1.3 Score=45.61 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.4
Q ss_pred CcEEE--EeCCCCcHHHH
Q 007090 263 RDIIG--IAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~--~~~TGsGKT~~ 278 (618)
..+++ .|+.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 46777 89999999974
No 171
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.13 E-value=0.54 Score=44.67 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=27.0
Q ss_pred CceeEEEecchhhhhc-----CCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 371 SRVTYLVLDEADRMFD-----LGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~-----~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
....++|+||.-.+++ ......+..++..++....+++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999998875 333444666666664433455554433
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.78 E-value=2.6 Score=42.53 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.2
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.||.|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 379999999999975
No 173
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.73 E-value=1.8 Score=43.37 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=24.4
Q ss_pred CceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
....++|+||+|.|... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999987532 2344556666655555555443
No 174
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.51 E-value=18 Score=35.73 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=30.2
Q ss_pred ChHHHHHHHHccccccCceeEEEecchhhhhc---CCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~---~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
+...+...+..... .--+|||||+|.+.. ..+...+..+.... +.. .++++++.
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~i~~g~~ 179 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRI-KFIMSGSE 179 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTE-EEEEEESS
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCe-EEEEEcCc
Confidence 34455555543211 245899999999864 35666666666553 233 34455443
No 175
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.46 E-value=2.8 Score=41.39 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=23.0
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
.....++||||||.|.... .+.+...+..-++...+|+.|
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3567899999999975332 233445555433334344333
No 176
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.40 E-value=3.7 Score=40.33 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred CceeEEEecchhhhh-cCCChHHHHHHHHhcCCCccEEEEeccccHHHHHHHHH
Q 007090 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (618)
Q Consensus 371 ~~~~~iIvDEah~~~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~l~~~ 423 (618)
..+++||||++-.+. +......+..+...+.+..-++.+.++........++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 467899999994322 11123344444555556555556666644333333333
No 177
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.24 E-value=2.5 Score=40.29 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=52.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc----c--ccCCcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A--RGLDIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~----~--~Gldi~~ 538 (618)
..++||.+|++.-+..+++.++.. ++.+..++|+.+...+...+ .+...|+|+|. .+ . .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999988888777654 78999999998876554333 24678999993 22 1 4567778
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888775
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.12 E-value=0.89 Score=48.77 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=25.1
Q ss_pred CceeEEEecchhhhhcCC--ChHHHHHHHHhcCCCccEEEEeccc
Q 007090 371 SRVTYLVLDEADRMFDLG--FEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 371 ~~~~~iIvDEah~~~~~~--~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
....+|||||+|.+.... ....+..++.. ....+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 356789999999876432 22444455444 344567776664
No 179
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.97 E-value=0.66 Score=52.26 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=35.8
Q ss_pred CCccCCccccCCCHHHHHHHHHCC-C--CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQG-Y--EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~~-~--~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
..|-.+|.+.+.-....+.|...- + ..|.-++... +...+.+|+.||+|+|||+. ..++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l--AkaiA~ 533 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL--AKAIAN 533 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH--HHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH--HHHHHH
Confidence 345578999888888777776431 1 1111111000 11236799999999999964 444444
No 180
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=86.92 E-value=8.7 Score=30.69 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=71.1
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCC-------cCCccEEEEc
Q 007090 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD-------IKSIKSVVNF 545 (618)
Q Consensus 473 vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gld-------i~~v~~VI~~ 545 (618)
.+||...-+-...+...++..|..+..++++.+...|.+-++.|......|--..+--.-.-| .|.++.|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 468888888999999999999999999999999999999999998765544332221110101 2445555554
Q ss_pred CCCC--CHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHHHHHHHHcC
Q 007090 546 DIAR--DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594 (618)
Q Consensus 546 ~~p~--~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i~~~l~~~~ 594 (618)
.... -+.+|+.- +-..| -.++.++...|.........-+...+
T Consensus 85 ttddkewikdfiee---akerg---vevfvvynnkdddrrkeaqqefrsdg 129 (162)
T 2l82_A 85 TTDDKEWIKDFIEE---AKERG---VEVFVVYNNKDDDRRKEAQQEFRSDG 129 (162)
T ss_dssp ECCCHHHHHHHHHH---HHHTT---CEEEEEEECSCHHHHHHHHHHHCCSS
T ss_pred ecCcHHHHHHHHHH---HHhcC---cEEEEEecCCCchhHHHHHHHhhhcC
Confidence 3221 13333332 22222 45666676666555555544444444
No 181
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.76 E-value=1.8 Score=45.85 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=39.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
.+....+.+-||||||++ +..+..-. +..+|||+|+...|.|++..+..|.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAERH---------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHHS---------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456788999999999964 33332211 33479999999999999999999864
No 182
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.52 E-value=10 Score=37.35 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.2
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++-+++.+++|+|||+.
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 45678899999999975
No 183
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.49 E-value=2.3 Score=37.53 Aligned_cols=73 Identities=19% Similarity=0.337 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++..+..++..+... ++.+..++|+.+..+.... +. ....|+|+|. .+ ...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcC
Confidence 457999999999998887777665 8889999998776554332 23 3478999993 22 335567778
Q ss_pred eEEEecc
Q 007090 374 TYLVLDE 380 (618)
Q Consensus 374 ~~iIvDE 380 (618)
++||.-.
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877633
No 184
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.29 E-value=1.7 Score=41.49 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.2
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+.+++.||+|+|||+. +-++...
T Consensus 50 ~g~ll~G~~G~GKTtl--~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL--ARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHH
Confidence 4599999999999964 4445444
No 185
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.63 E-value=4.4 Score=41.00 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=55.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----cccCCcC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIK 537 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~~Gldi~ 537 (618)
...++||.||++.-+..+++.+... ++.+..++|+.+....... +..+...|+|+|. .+ ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3458999999999999988888764 7889999999987665443 4456778999993 22 2345677
Q ss_pred CccEEEE
Q 007090 538 SIKSVVN 544 (618)
Q Consensus 538 ~v~~VI~ 544 (618)
.++.||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888774
No 186
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.57 E-value=1.8 Score=42.71 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=22.7
Q ss_pred ceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 372 ~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
...+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999865321 233445555544445555544
No 187
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.74 E-value=2.2 Score=48.88 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.+++++|++|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 5799999999999964
No 188
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.60 E-value=1.1 Score=42.39 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.1
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMI 284 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l 284 (618)
.|.-++++|++|+|||.. ++-++
T Consensus 29 ~G~l~~i~G~pG~GKT~l-~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF-AAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHH
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHH
Confidence 456789999999999963 44433
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.54 E-value=0.73 Score=45.82 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
...+++.|++|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999964
No 190
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.48 E-value=1.8 Score=43.12 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=30.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~ 319 (618)
.|.-++++|++|+|||. +++-+..++..+ +..++++.-- .-..|+...+.
T Consensus 67 ~G~l~li~G~pG~GKTt-l~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTA-FALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHH-HHHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 55678999999999996 444444444332 3567777532 22334444443
No 191
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.31 E-value=2.7 Score=44.37 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEE-ccc
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APT 307 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl-~Pt 307 (618)
|.-+.++|++|+|||+. +..|..++.. .+..+++. +.+
T Consensus 293 GeVI~LVGpNGSGKTTL--l~~LAgll~~------~~G~V~l~g~D~ 331 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTT--IGKLARQFEQ------QGKSVMLAAGDT 331 (503)
T ss_dssp TEEEEEECCTTSSHHHH--HHHHHHHHHH------TTCCEEEECCCT
T ss_pred CeEEEEECCCcccHHHH--HHHHHHHhhh------cCCeEEEecCcc
Confidence 34578899999999975 4444444431 24456665 444
No 192
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.22 E-value=1.7 Score=46.67 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc-----ccCCcCCccEEE
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSIKSVV 543 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~-----~Gldi~~v~~VI 543 (618)
.+.+||.+|++.-+......|...|+.+..+||+.+..++..+...+..|..+||++|. .+. ..+....+..||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999994 222 223334556655
Q ss_pred E
Q 007090 544 N 544 (618)
Q Consensus 544 ~ 544 (618)
.
T Consensus 145 i 145 (523)
T 1oyw_A 145 V 145 (523)
T ss_dssp E
T ss_pred E
Confidence 3
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.68 E-value=3.5 Score=44.89 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=61.3
Q ss_pred EcCCCcccHH-HHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH--hcCCceEEE
Q 007090 449 VIPSDAEKLP-WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF--KSGVYHVLI 525 (618)
Q Consensus 449 ~~~~~~~k~~-~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F--~~g~~~VLV 525 (618)
..+....|.. +++-.+. ..+.+||.+|++.-+....+.|...|+.+..++|+++..++..+...+ ..+..+||+
T Consensus 65 ~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv 141 (591)
T 2v1x_A 65 VMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIY 141 (591)
T ss_dssp ECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEE
T ss_pred EECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEE
Confidence 3344444443 3333333 367999999999999999999999999999999999999998888888 578899999
Q ss_pred ecc
Q 007090 526 ATD 528 (618)
Q Consensus 526 aT~ 528 (618)
+|.
T Consensus 142 ~Tp 144 (591)
T 2v1x_A 142 VTP 144 (591)
T ss_dssp ECH
T ss_pred ECh
Confidence 995
No 194
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.62 E-value=4.6 Score=35.93 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++..|..++..+... ++.+..++|+.+..+.... +. ....|+|||. .+ ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccC
Confidence 568999999999998887776654 7889999998876554333 23 3578999994 22 345567788
Q ss_pred eEEEe
Q 007090 374 TYLVL 378 (618)
Q Consensus 374 ~~iIv 378 (618)
.+||.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88884
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.60 E-value=0.88 Score=39.32 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=18.0
Q ss_pred HHHhcCCcEEEEeCCCCcHHHH
Q 007090 257 PIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 257 ~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
........+++.|++|+|||..
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHH
T ss_pred HHhCCCCcEEEECCCCccHHHH
Confidence 3345678999999999999964
No 196
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=83.43 E-value=3.5 Score=36.34 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=51.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++..+..++..+... ++.+..++|+.+..+.... +. ....|+|||. .+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccC
Confidence 567999999999998887777654 7889999998876554332 22 3478999994 22 334567777
Q ss_pred eEEEecc
Q 007090 374 TYLVLDE 380 (618)
Q Consensus 374 ~~iIvDE 380 (618)
.+||.-.
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 7777633
No 197
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=83.34 E-value=0.94 Score=47.90 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+.+++.||+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999975
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.31 E-value=1.3 Score=47.92 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=19.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.+..+++.||+|+|||+. +-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 467899999999999964 44455544
No 199
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.01 E-value=4.7 Score=38.00 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc----c-ccCCcCCc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIKSI 539 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~----~-~Gldi~~v 539 (618)
...+||.+|++.-+..+++.++. .++.+..++|+.+...+...+.. ...|+|+|. .+ . ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999988888776654 48899999999988766554432 478999994 22 2 34678888
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88875
No 200
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=82.97 E-value=4.5 Score=37.43 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=51.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHH---Hc-CCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++.-+..++..+... ++.+..++|+.+..++...+ .. ..+|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccC
Confidence 457999999999998887777665 88999999998766554333 33 478999993 33 345567778
Q ss_pred eEEEe
Q 007090 374 TYLVL 378 (618)
Q Consensus 374 ~~iIv 378 (618)
.+||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87774
No 201
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.94 E-value=0.97 Score=47.08 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 221 PRPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 221 p~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
..|-.+|.+.+--....+.|... .+..|.-++...+ -..+.+|+.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 46778999998777777666532 1122222222211 1247899999999999965
No 202
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.73 E-value=5.2 Score=38.72 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.0
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
+..|.-+++.|++|+|||+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl 46 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSML 46 (279)
T ss_dssp EETTSEEEEEESTTSSHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHH
Confidence 44778899999999999974
No 203
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.66 E-value=7.4 Score=35.31 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=51.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc----c-ccCCcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~----~-~Gldi~~ 538 (618)
..++||.+|++.-+..+++.+... +..+..++|+.+..+.... + .+...|+|+|. .+ . ..+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888887653 6789999999887554322 2 34678999994 22 2 2356777
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
++.||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 204
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.18 E-value=4.7 Score=37.86 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=46.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc-ccCCcCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKS 538 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-----~~~-~Gldi~~ 538 (618)
...++||.+|++.-+..+++.++.. ++.+..++|+.+.... ...+..+...|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3468999999999999988888764 5778888887764332 3345567789999993 222 3466777
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
++.||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.77 E-value=1 Score=38.94 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=17.0
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
...+..+++.|++|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34667999999999999965
No 206
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.02 E-value=11 Score=37.37 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=15.2
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+++.|++|+|||..
T Consensus 106 ~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHhHH
Confidence 456789999999999974
No 207
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.34 E-value=11 Score=38.85 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.0
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++-+++++++|+|||+.
T Consensus 98 ~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45677889999999975
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.20 E-value=5.5 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
.++.++++||+|+|||+. +-++..
T Consensus 237 ~~~~vLL~Gp~GtGKTtL--arala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI--ARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHH--HHHHHH
T ss_pred CCCeEEEECcCCCCHHHH--HHHHHH
Confidence 457899999999999964 444443
No 209
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.81 E-value=3.2 Score=37.56 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=42.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---HHHHH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++..|..++..+... ++.+..++|+.+..+. ...+. ....|+|||. .+ ...+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCcccC
Confidence 567999999999998887776654 7888888888664433 22233 3578999993 22 233456677
Q ss_pred eEEEe
Q 007090 374 TYLVL 378 (618)
Q Consensus 374 ~~iIv 378 (618)
.+||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77775
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.35 E-value=2.2 Score=48.03 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.5
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+.+|+.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999975
No 211
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.23 E-value=5 Score=37.51 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=49.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----c--cCCcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----R--GLDIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~--Gldi~~ 538 (618)
..++||.+|++.-+..+++.++.. ++.+..++|+.+.......+ +...|+|+|. .+. + .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 457999999999999888888764 47899999988765443333 4678999994 221 2 366677
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
No 212
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.15 E-value=8.7 Score=39.19 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=52.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (618)
.+.++||.|+++..+..+++.+.+. ++.+..++|+.+..+.... +. ....|+|||. .+ ...+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCCccc
Confidence 4678999999999998887777664 7889999998876554332 22 3578999994 44 33556778
Q ss_pred eeEEEe
Q 007090 373 VTYLVL 378 (618)
Q Consensus 373 ~~~iIv 378 (618)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 213
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=78.13 E-value=5.5 Score=35.36 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHH---H-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++..+..++..+... ++.+..++|+.+..+....+ . ....|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 457999999999998887777665 88899999988765543332 2 3578999994 22 234566777
Q ss_pred eEEEecc
Q 007090 374 TYLVLDE 380 (618)
Q Consensus 374 ~~iIvDE 380 (618)
.+||.=.
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8777533
No 214
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=77.70 E-value=2.1 Score=38.60 Aligned_cols=120 Identities=13% Similarity=0.196 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHhcC--CcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcC
Q 007090 249 TSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~--~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~ 326 (618)
.+-|..++..++.. +-.++.+.-|++||...+.-+ .++. ...|..|.+|+|+...+....+.. +
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L-~~~a------~~~Gr~V~vLAp~~~s~~~l~~~~-------~ 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAEL-VMMA------REQGREVQIIAADRRSQMNMKQDE-------R 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHH-HHHH------HHTTCCEEEECSTTHHHHHHSCTT-------T
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHH-HHHH------HhcCeEEEEEcCchHHHHHHHhhc-------C
Confidence 46788888888754 356778899999998743333 3332 234888999999987765432211 1
Q ss_pred ceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEEEecchhhhhcCCChHHHHHHHHhc-CCCcc
Q 007090 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQ 405 (618)
Q Consensus 327 ~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~-~~~~q 405 (618)
+. .+++ +. ..+......+..=+++|||||-.|. ...+..++... +.+.|
T Consensus 102 l~--------------------~~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 102 LS--------------------GELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp CS--------------------SCSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred cC--------------------ccee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 11 0110 11 1112223334455689999999876 33444444443 34567
Q ss_pred EEEEecc
Q 007090 406 TLLFSAT 412 (618)
Q Consensus 406 ~i~~SAT 412 (618)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 7777544
No 215
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.70 E-value=11 Score=34.08 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=52.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc----c-ccCCcCCccE
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIKSIKS 541 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~----~-~Gldi~~v~~ 541 (618)
..++||.+|++.-+..+++.+... .+.+..++|+.+.......+. ....|+|+|. .+ . ..+++..++.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999999876 468899999887654443332 2478999994 22 2 3466778888
Q ss_pred EEE
Q 007090 542 VVN 544 (618)
Q Consensus 542 VI~ 544 (618)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 216
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.49 E-value=1.9 Score=53.30 Aligned_cols=44 Identities=25% Similarity=0.233 Sum_probs=29.6
Q ss_pred HHHHhc------CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc
Q 007090 256 LPIILS------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (618)
Q Consensus 256 i~~i~~------~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt 307 (618)
+..++. ++.+++++|+|+|||..++..+ ..... +|.+++++..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala-~ea~~-------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI-AAAQR-------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH-HHHHT-------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHH-HHHHH-------cCCcEEEEEcc
Confidence 555555 6899999999999998643333 33222 36678887654
No 217
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.33 E-value=2.1 Score=44.62 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=30.9
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~ 312 (618)
...++++.|+||+|||.. +.+++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 347899999999999986 33444444432 556788888777754
No 218
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.23 E-value=8 Score=38.88 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.1
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.++|++|+|||..
T Consensus 130 ~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 446789999999999974
No 219
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.19 E-value=8.8 Score=35.36 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=53.9
Q ss_pred EcCCCcccHHH-H---HHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007090 449 VIPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (618)
Q Consensus 449 ~~~~~~~k~~~-l---~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~ 520 (618)
..+....|... + +..+.......++||.+|++.-+..+++.+... ++.+..++|+.+..+.... +. .
T Consensus 57 ~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~ 131 (224)
T 1qde_A 57 QAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--D 131 (224)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--T
T ss_pred ECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--C
Confidence 33444555543 2 333333334568999999999998888887653 6789999998876544332 22 3
Q ss_pred ceEEEecc-cc-----cccCCcCCccEEEE
Q 007090 521 YHVLIATD-VA-----ARGLDIKSIKSVVN 544 (618)
Q Consensus 521 ~~VLVaT~-~~-----~~Gldi~~v~~VI~ 544 (618)
..|+|+|. .+ ...+++..++.||.
T Consensus 132 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 78999994 22 24566777888774
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=76.64 E-value=1.8 Score=41.69 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.7
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
+..|.-++++||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677889999999999974
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.59 E-value=5.2 Score=45.01 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
...+++++|++|+|||..
T Consensus 206 ~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SSCEEEEECCTTSSHHHH
T ss_pred CCCCeEEEcCCCCCHHHH
Confidence 346899999999999975
No 222
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.16 E-value=6.6 Score=36.41 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=48.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----cccCCcCCcc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKSIK 540 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~---~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~~Gldi~~v~ 540 (618)
..++||.+|++.-+..+++.+... ++.+..++|+.+...+... +.. ...|+|+|. .+ ...+++..++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK-GVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-CCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCcCcccce
Confidence 457999999999999999998874 7889999998876544333 233 478999994 22 2356778888
Q ss_pred EEEE
Q 007090 541 SVVN 544 (618)
Q Consensus 541 ~VI~ 544 (618)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 223
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.35 E-value=3 Score=42.19 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.1
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999974
No 224
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.18 E-value=3.9 Score=37.78 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=48.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-c----cc-ccCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-V----AA-RGLD 535 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~--------~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~----~~-~Gld 535 (618)
..++||.+|++.-+..+++.+.+. ++.+..++|+.+....... + .+...|+|+|. . +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999988888877653 6788999998765432211 1 23578999994 2 22 2456
Q ss_pred cCCccEEEE
Q 007090 536 IKSIKSVVN 544 (618)
Q Consensus 536 i~~v~~VI~ 544 (618)
+..++.||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677777774
No 225
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.11 E-value=4.5 Score=41.90 Aligned_cols=18 Identities=33% Similarity=0.387 Sum_probs=14.7
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++||||||||+.
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 345678999999999974
No 226
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=74.88 E-value=29 Score=37.03 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHH---H-cCCcEEEeChHHHHHHHHccccccCc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSR 372 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (618)
.+.++||.|+|+..|..++..+.+... .++.+..++|+.........+ . ...+|+|||. .+ ...+++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCccc
Confidence 366899999999999999888887643 267888889988765543322 2 3589999995 33 34556777
Q ss_pred eeEEEecc
Q 007090 373 VTYLVLDE 380 (618)
Q Consensus 373 ~~~iIvDE 380 (618)
+++||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88887544
No 227
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=74.81 E-value=10 Score=37.51 Aligned_cols=18 Identities=33% Similarity=0.104 Sum_probs=14.9
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+++.|++|+|||..
T Consensus 97 ~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TTEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346789999999999974
No 228
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.75 E-value=16 Score=37.51 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+++++++|+|||..
T Consensus 177 ~Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQL 194 (400)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEEcCCCCChHHH
Confidence 456789999999999964
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=73.46 E-value=4.3 Score=43.30 Aligned_cols=31 Identities=29% Similarity=0.142 Sum_probs=22.5
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEeCCCCcHHHH
Q 007090 248 PTSIQCQALPI-ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 248 ~~~~Q~~~i~~-i~~~~dvl~~~~TGsGKT~~ 278 (618)
+++.+...+.. +..|..++++|+||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445555544 45778899999999999974
No 230
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.31 E-value=10 Score=35.82 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc-----ccCCcCCc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~-----~Gldi~~v 539 (618)
..++||.+|++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999988888877653 57889999988765443332 24578999994 222 34567778
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 231
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.28 E-value=2.2 Score=44.41 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=31.5
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
+|-.+|.+.+--....+.|... .+..|.-++.-. +-.-+.+|+.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 5667899987666655555421 011111111111 11237899999999999975
No 232
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.77 E-value=4.3 Score=47.52 Aligned_cols=73 Identities=11% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CC----cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cccccCC-cCCc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GF----KAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARGLD-IKSI 539 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~----~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~~Gld-i~~v 539 (618)
..++||.+|++.-+..+++.++.. ++ .+..+||+.+...+.+....+.. ..|+|+|. .+..-+. +..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 568999999999998888888653 56 89999999999888777777776 89999994 3332222 5677
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
++||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88774
No 233
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.34 E-value=9 Score=39.65 Aligned_cols=71 Identities=23% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhC-CC---cEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc-----ccCCcCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQK-GF---KAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKS 538 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~-~~---~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~-----~Gldi~~ 538 (618)
..+++||.||+..-+...++.+.+. +. .+..+||+....++..... ...|+|+|. .+. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 3679999999999998888888765 55 8999999999877655433 467999993 333 2456677
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
++.||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 787774
No 234
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=72.13 E-value=4.7 Score=32.69 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=36.7
Q ss_pred HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
+...+.......+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3344444434568999999999999999999999999999999864
No 235
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.70 E-value=14 Score=35.18 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc--ccCCcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA--RGLDIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-----~~~--~Gldi~~ 538 (618)
..++||.+|++.-+..+++.++.. +..+..++|+......... +..| ..|+|+|. .+. .++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999888888763 6788999998886554433 3334 78999993 111 2467788
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
++.||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 236
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.57 E-value=17 Score=36.52 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=59.1
Q ss_pred CCCcccHHH-H---HHhcCCCCCCCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 007090 451 PSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (618)
Q Consensus 451 ~~~~~k~~~-l---~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~ 522 (618)
+....|... + +..+.......++||.+|++.-+..+++.+.. .++.+..++|+.+..+....+. ...
T Consensus 66 ~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ 140 (394)
T 1fuu_A 66 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQ 140 (394)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCS
T ss_pred CCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCC
Confidence 344455433 2 33333333456899999999999888887765 3688999999998766655443 467
Q ss_pred EEEecc-cc-----cccCCcCCccEEEE
Q 007090 523 VLIATD-VA-----ARGLDIKSIKSVVN 544 (618)
Q Consensus 523 VLVaT~-~~-----~~Gldi~~v~~VI~ 544 (618)
|+|+|. .+ ...+.+..+++||.
T Consensus 141 i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 141 IVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 999993 22 13455667777774
No 237
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.30 E-value=4.2 Score=37.63 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
+.-|..++.-+..|.-+.+.||.|+|||+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 445677888888999999999999999964
No 238
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=71.10 E-value=40 Score=36.17 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (618)
.+.++||.|+|+..|..++..+.+... .++.+..++|+......... +. ....|+|||. .+ ...+++..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCccc
Confidence 366899999999999999888887643 26788888998776554332 22 3578999995 33 34556778
Q ss_pred eeEEEecch
Q 007090 373 VTYLVLDEA 381 (618)
Q Consensus 373 ~~~iIvDEa 381 (618)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888876543
No 239
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.86 E-value=13 Score=37.79 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++..|..++..+.+. ++.+..++|+.+..+.... +. ....|+|||. .+ ...+++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 567999999999998887777765 7888899998876654333 23 3478999994 33 345677888
Q ss_pred eEEEe
Q 007090 374 TYLVL 378 (618)
Q Consensus 374 ~~iIv 378 (618)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88874
No 240
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=70.42 E-value=8 Score=45.91 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=43.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCc----cccCCCCeEEEEcccHHHHHHHHHHHHHHHh
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPE----LQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~----~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~ 323 (618)
..++.|..|||||.+...-++..++.... ...-.-..+|+|+=|+..|..+.+++.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999998766666666654210 0011234699999999999999999887654
No 241
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.10 E-value=20 Score=38.11 Aligned_cols=125 Identities=15% Similarity=0.235 Sum_probs=61.2
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 339 (618)
..|.-+++.+++|+|||+. +.++...... .|.+++++++... ..|+...+..+ ++. ..
T Consensus 279 ~~G~i~~i~G~~GsGKSTL--l~~l~g~~~~------~G~~vi~~~~ee~-~~~l~~~~~~~----g~~---------~~ 336 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLL--VSRFVENACA------NKERAILFAYEES-RAQLLRNAYSW----GMD---------FE 336 (525)
T ss_dssp ESSCEEEEEECTTSSHHHH--HHHHHHHHHT------TTCCEEEEESSSC-HHHHHHHHHTT----SCC---------HH
T ss_pred CCCcEEEEEeCCCCCHHHH--HHHHHHHHHh------CCCCEEEEEEeCC-HHHHHHHHHHc----CCC---------HH
Confidence 3567789999999999974 2223322221 2445666665322 22444333221 221 11
Q ss_pred HHHHHHHcCCcEEE-------eChHHHHHHHHccccccCceeEEEecchhhhhcCC-----ChHHHHHHHHhcCCCccE-
Q 007090 340 DQFKELKAGCEIVI-------ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----FEPQIRSIVGQIRPDRQT- 406 (618)
Q Consensus 340 ~~~~~l~~~~dIiv-------~Tp~~L~~~l~~~~~~l~~~~~iIvDEah~~~~~~-----~~~~i~~i~~~~~~~~q~- 406 (618)
... ..+ .+-+ .+.+...+.+... ......++||+| -=.-++.. ....+..++..++....+
T Consensus 337 -~~~--~~g-~~~~~~~~p~~LS~g~~q~~~~a~-~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv 410 (525)
T 1tf7_A 337 -EME--RQN-LLKIVCAYPESAGLEDHLQIIKSE-INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG 410 (525)
T ss_dssp -HHH--HTT-SEEECCCCGGGSCHHHHHHHHHHH-HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred -HHH--hCC-CEEEEEeccccCCHHHHHHHHHHH-HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE
Confidence 111 111 1112 1444444443222 224567899999 55556665 555666666665433334
Q ss_pred EEEecc
Q 007090 407 LLFSAT 412 (618)
Q Consensus 407 i~~SAT 412 (618)
++.|..
T Consensus 411 ilvsh~ 416 (525)
T 1tf7_A 411 LFTNTS 416 (525)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 444443
No 242
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.95 E-value=14 Score=37.14 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=55.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HHc-CCcEEEeChHHHHHHHHccccccCc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (618)
.+.++||.|+++..|..+++.+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 3568999999999998887777665 7888889998876554332 333 478999994 32 34567888
Q ss_pred eeEEEecchh
Q 007090 373 VTYLVLDEAD 382 (618)
Q Consensus 373 ~~~iIvDEah 382 (618)
+++||.-...
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9988875544
No 243
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=69.85 E-value=12 Score=36.21 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=18.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
....+++.||+|+|||.. +-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~l--a~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI--ARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCceEEEECCCCCCHHHH--HHHHHHHh
Confidence 357899999999999964 33444433
No 244
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=69.47 E-value=27 Score=38.39 Aligned_cols=78 Identities=15% Similarity=0.333 Sum_probs=57.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (618)
.+.++||.|+|+..|..+.+.+... ++++.+++|+....+.... +. +..+|+|||. .+ ...+.+..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 3678999999999988877666654 8888888887765544333 33 3578999984 22 45567888
Q ss_pred eeEEEecchhhh
Q 007090 373 VTYLVLDEADRM 384 (618)
Q Consensus 373 ~~~iIvDEah~~ 384 (618)
+++||+=+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998763
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=69.45 E-value=3.3 Score=37.89 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.2
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.|+-+.++||+|+|||+. +-++..++
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 467899999999999965 44454443
No 246
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=68.76 E-value=31 Score=36.45 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.6
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
.+++++.+|+|||+.+
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.68 E-value=2.8 Score=37.57 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=16.0
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
+.|+-++++||+|+|||+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999974
No 248
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.29 E-value=14 Score=36.72 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=51.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (618)
.+.++||.|+++.-+..+++.+.+. ++.+..++|+.+..+.... +. ....|+|||. .+. ..+++..
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 3567999999999998887777665 7888889998776554332 22 3478999994 222 2445677
Q ss_pred eeEEEec
Q 007090 373 VTYLVLD 379 (618)
Q Consensus 373 ~~~iIvD 379 (618)
+++||.-
T Consensus 307 ~~~Vi~~ 313 (367)
T 1hv8_A 307 LNCVINY 313 (367)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7877753
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.85 E-value=3.2 Score=37.87 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.9
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.++.++++|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 567899999999999975
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=67.80 E-value=5.9 Score=38.85 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCCcHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~ 279 (618)
.++.+++.+++|+|||+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999753
No 251
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=67.54 E-value=4.2 Score=40.39 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=21.8
Q ss_pred HHHHhcCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 256 i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
...+..+.++++.||+|+|||.. +-++...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~l--a~~la~~ 69 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLS--VNTLAKT 69 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHH--HHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHH--HHHHHHH
Confidence 34455688999999999999964 3344444
No 252
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.53 E-value=24 Score=35.53 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=51.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-c----cc-ccCCcCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-V----AA-RGLDIKS 538 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~----~~-~Gldi~~ 538 (618)
...++||.+|+..-+..+++.++.. ++.+..++|+......... ..+...|+|+|. . +. ....+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 3458999999999988888887754 6789999999876543222 235678999993 2 22 3456777
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=67.40 E-value=11 Score=38.06 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=19.2
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
....+++.||+|+|||+. .-++...+
T Consensus 50 ~~~~vll~GppGtGKT~l--a~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL--AETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHH--HHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHH--HHHHHHHc
Confidence 456899999999999974 44444443
No 254
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.07 E-value=3.4 Score=42.76 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=32.2
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 222 ~p~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
.|-.+|++.+=-....+.|... .+..|.-++...+ -.-+.+|+.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 4668899987555555554421 1122222222111 1237899999999999974
No 255
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=66.61 E-value=29 Score=35.13 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=52.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-----ccc-ccCCcCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKS 538 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-----~~~-~Gldi~~ 538 (618)
...++||.+|++.-+..+++.+... ++.+..++|+....+....+. ....|+|+|. .+. ..+.+..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 4568999999999999888888754 578899999988766544432 2357999993 222 3466677
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 787774
No 256
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=66.41 E-value=7.1 Score=41.44 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 251 IQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 251 ~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
.=..++-.+..+.++++.||+|+|||..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344556677889999999999999964
No 257
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.08 E-value=8.7 Score=35.44 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=40.3
Q ss_pred cccCCCHHHHHHHHHhcCeeeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEeC
Q 007090 195 SISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAK 270 (618)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~dvl~~~~ 270 (618)
.+..|+-.+|-..+-..- .+. +=-..+.+.|.-+++ .+..+ ...+..++.+ +.+++.||
T Consensus 4 ~~~~m~~~~~i~~~~~~~---~~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GP 66 (212)
T 1tue_A 4 FGSGSNMSQWIRFRCSKI---DEG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGP 66 (212)
T ss_dssp --CCSCHHHHHHHHHHTS---CSC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESC
T ss_pred HHHhcCHHHHHHHHHHHc---cCC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECC
Confidence 456788888876664321 111 112345566665553 33333 3344444444 35899999
Q ss_pred CCCcHHHHHHHHHHHH
Q 007090 271 TGSGKTAAFVLPMIVH 286 (618)
Q Consensus 271 TGsGKT~~~~l~~l~~ 286 (618)
+|+|||.. +..++.+
T Consensus 67 PGtGKTt~-a~ala~~ 81 (212)
T 1tue_A 67 ANTGKSYF-GMSFIHF 81 (212)
T ss_dssp GGGCHHHH-HHHHHHH
T ss_pred CCCCHHHH-HHHHHHH
Confidence 99999974 3444444
No 258
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=65.94 E-value=17 Score=37.65 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=50.2
Q ss_pred eEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHH---Hc-CCcEEEeChHHHHHHHHccccccCceeE
Q 007090 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRVTY 375 (618)
Q Consensus 300 ~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~ 375 (618)
++||.|+|+.-|..+++.+.+. ++.+..++|+....+....+ .. ...|+|||. .+ ...+++..+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCE
Confidence 3999999999998887776654 88899999987765543332 32 478999995 32 34556778887
Q ss_pred EEe
Q 007090 376 LVL 378 (618)
Q Consensus 376 iIv 378 (618)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 259
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=65.35 E-value=48 Score=36.40 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=55.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+|+..|..+.+.+... ++.+.+++|+....+.... +. ...+|+|||. .+ ...+.+..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCC
Confidence 668999999999988877666654 8888888887765544333 33 3478999983 22 345667889
Q ss_pred eEEEecchhh
Q 007090 374 TYLVLDEADR 383 (618)
Q Consensus 374 ~~iIvDEah~ 383 (618)
++||+=+++.
T Consensus 509 ~lVI~~d~d~ 518 (664)
T 1c4o_A 509 SLVAILDADK 518 (664)
T ss_dssp EEEEETTTTS
T ss_pred CEEEEeCCcc
Confidence 9999888875
No 260
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=65.11 E-value=6.7 Score=40.09 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=27.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~ 309 (618)
.+.+++++|+||+|||... -.++..+.. .+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~-~~~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA-KMLLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHH-HHHHHHHHH-------CCCEEEEEeCCcC
Confidence 5678999999999999743 233333322 2566888878654
No 261
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=64.66 E-value=4.5 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.3
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567999999999999964
No 262
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=64.50 E-value=19 Score=37.41 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCcHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFV 280 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~ 280 (618)
+.+++++++|+|||++..
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467788999999998643
No 263
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=64.42 E-value=12 Score=36.73 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHH---H-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+|+.-+..++..+... ++.+..++|+.+..++...+ . ...+|+|||. .+ ...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccce
Confidence 556999999999888776666544 88999999998766554333 2 3578999993 33 345567788
Q ss_pred eEEEe
Q 007090 374 TYLVL 378 (618)
Q Consensus 374 ~~iIv 378 (618)
.+||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88774
No 264
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=64.41 E-value=4 Score=36.46 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.++++|++|||||++
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46789999999999975
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=64.31 E-value=4.7 Score=40.82 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.6
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
+..|..++++|+||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45888999999999999964
No 266
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=64.21 E-value=4.1 Score=37.49 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|+-++++||+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466788999999999975
No 267
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.01 E-value=13 Score=36.24 Aligned_cols=105 Identities=14% Similarity=0.038 Sum_probs=63.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----c-ccCCcCC
Q 007090 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A-RGLDIKS 538 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~-~Gldi~~ 538 (618)
.++||.+|++.-+..+++.+... ++.+..++|+.....+. .....|||+|. .+ . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 47999999999999988887753 56788888876532211 34567999994 22 1 3577888
Q ss_pred ccEEEEcCCC-----CCHHHHHHHHhhcccCCCCCeEEEEEecCccHHHHHHH
Q 007090 539 IKSVVNFDIA-----RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (618)
Q Consensus 539 v~~VI~~~~p-----~~~~~y~Qr~GR~gR~g~~~g~~~~l~~~~d~~~~~~i 586 (618)
+++||.=... ......+.++-+..+ ...-+.++|..=......+
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~v~~~ 284 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKF 284 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSC----TTCEEEEEESCCCHHHHHH
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCC----CCCEEEEEeccCCHHHHHH
Confidence 9988853221 122233333433332 2345666666543333333
No 268
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=64.00 E-value=2.8 Score=37.43 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.3
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
..++.++++|++|+|||++
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3567899999999999975
No 269
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=63.98 E-value=7.9 Score=30.31 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=33.6
Q ss_pred cCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 464 l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
+..... .+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 48 ~~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 48 EHGLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CCCCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred HHhCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 333334 78999999998999999999999999888888764
No 270
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=63.93 E-value=30 Score=34.93 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=60.1
Q ss_pred CCCcccHHH----HHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCce
Q 007090 451 PSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYH 522 (618)
Q Consensus 451 ~~~~~k~~~----l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~ 522 (618)
+....|... ++..+.......++||.+|++.-+..+++.+... +..+..++|+...... ...+..+...
T Consensus 85 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 161 (414)
T 3eiq_A 85 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPH 161 (414)
T ss_dssp CSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCS
T ss_pred CCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCC
Confidence 344555433 2333433334568999999999988888888764 6778888888765443 3455667789
Q ss_pred EEEecc-----ccc-ccCCcCCccEEEE
Q 007090 523 VLIATD-----VAA-RGLDIKSIKSVVN 544 (618)
Q Consensus 523 VLVaT~-----~~~-~Gldi~~v~~VI~ 544 (618)
|+|+|. .+. ..+.+..+++||.
T Consensus 162 iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 162 IIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 999993 222 3456666777764
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=63.65 E-value=4.1 Score=36.12 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++-++++|++|||||+.
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999975
No 272
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.29 E-value=4.9 Score=35.39 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=17.9
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+..+++.|++|||||+. +-+|...
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHHH
Confidence 56789999999999975 4444443
No 273
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.25 E-value=4.1 Score=37.06 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.1
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
..|.-++++|++|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999975
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.07 E-value=7.5 Score=40.58 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=26.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
.|.-+++.|++|+|||. +++-+..++..+ +.+|+++.-
T Consensus 196 ~G~liiIaG~pG~GKTt-lal~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTA-FALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHH-HHHHHHHHHHHT-------TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHc-------CCEEEEEEC
Confidence 45678999999999997 445555554432 456787754
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=63.00 E-value=3.3 Score=36.31 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.1
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++|++|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 276
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.77 E-value=4 Score=40.79 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.0
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+-++++||||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999975
No 277
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.49 E-value=12 Score=35.85 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHhcCC-----cEEEEeCCCCcHHHH
Q 007090 234 TQLMHAISKQGYEKPTSIQCQA-LPIILSGR-----DIIGIAKTGSGKTAA 278 (618)
Q Consensus 234 ~~l~~~l~~~~~~~~~~~Q~~~-i~~i~~~~-----dvl~~~~TGsGKT~~ 278 (618)
..+.+.|..+|+. |++-.. +...+.++ .+++.||+|+|||+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~ 120 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNI 120 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHH
Confidence 3577777777764 555333 33344432 589999999999975
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.10 E-value=4.4 Score=36.82 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.|.-+.+.||+|||||+. +-++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 567788999999999975 4444444
No 279
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.99 E-value=1.9 Score=41.89 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=27.6
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--hcCCcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC-QALPII--LSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~-~~i~~i--~~~~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
|-.+|.+++-...+.+.+...- ..|+.. .++..+ .-.+.+++.||+|+|||+. +-++..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL--akala~ 66 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL--AKAVAN 66 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH--HHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH--HHHHHH
Confidence 4467888876666666554321 111111 112111 1224599999999999964 444444
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=61.96 E-value=12 Score=36.71 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.9
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++-+++.+++|+|||+.
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44677889999999975
No 281
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=61.81 E-value=4 Score=37.36 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=17.0
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
+..++-++++|++|||||+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44678899999999999975
No 282
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=61.80 E-value=7.4 Score=41.51 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=47.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----cc-C-CcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~G-l-di~~ 538 (618)
.+++||.+|+..-+..+.+.+... ++.+..+||+.+...+...+. ....|+|+|. .+. .+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999998888887777664 899999999987654432221 1367999993 332 22 3 6777
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888885
No 283
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=61.75 E-value=7.8 Score=39.01 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=24.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
.|+-+++.+++|+|||.. ++.++..+... +.+++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTV-ALHAVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEEC
Confidence 356789999999999974 34444444322 445666643
No 284
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.68 E-value=3.8 Score=37.64 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.0
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.++-+++.|+||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356789999999999964
No 285
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=61.55 E-value=4.8 Score=35.98 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.9
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++|++|||||++
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999975
No 286
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=61.39 E-value=7.1 Score=39.39 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEccc
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Pt 307 (618)
|.-+++.+|+|+|||+. ++.++..+.. .+.+++++..-
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecc
Confidence 46789999999999963 4555544432 24457776553
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=61.20 E-value=4.8 Score=36.87 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.3
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
+.|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677889999999999975
No 288
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=61.19 E-value=7.8 Score=39.10 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=25.1
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
.++-+++.+++|+|||.. ++.++..+... +.+++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTL-TLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHC-------CCeEEEEeC
Confidence 456789999999999974 34444444332 445776654
No 289
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=61.08 E-value=5.1 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3568999999999999999999999998888888754
No 290
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=60.97 E-value=8.2 Score=39.13 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=25.2
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
.|+-+++.+++|+|||. +++.++.++... +.+++++..
T Consensus 73 ~G~li~I~G~pGsGKTt-lal~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTT-LALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TTSEEEEEESTTSSHHH-HHHHHHHHHHHT-------TCCEEEEES
T ss_pred CCcEEEEEcCCCCChHH-HHHHHHHHHHHC-------CCeEEEEEC
Confidence 35678999999999996 455555555432 345666654
No 291
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=60.87 E-value=4.3 Score=40.18 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.5
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+-+++.||||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 4578899999999975
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=60.86 E-value=4.5 Score=36.33 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.5
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-++++|++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566789999999999975
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=60.48 E-value=3.8 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.2
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|..++++|++|||||++
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455689999999999975
No 294
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=60.30 E-value=6.1 Score=38.64 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=17.1
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
+.+++.||+|+|||.. .-++...+
T Consensus 37 ~~lLl~GppGtGKT~l--a~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ--CELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHH--HHHHHHHH
T ss_pred eEEEEECCCCCCHHHH--HHHHHHHh
Confidence 4688999999999964 44444433
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=60.22 E-value=4.8 Score=38.45 Aligned_cols=15 Identities=33% Similarity=0.120 Sum_probs=13.0
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++|+||||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368899999999975
No 296
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=60.22 E-value=4.7 Score=41.01 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.0
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
..|..++++||||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999974
No 297
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=60.14 E-value=8.7 Score=37.81 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=18.8
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
+.-+.+.|++|+|||+. +..+..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 45788899999999975 445555543
No 298
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.93 E-value=7.2 Score=47.55 Aligned_cols=122 Identities=19% Similarity=0.287 Sum_probs=67.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 340 (618)
.|+-+.+.+|.|||||+. +++++....+ .|..++++.+--+|.... ++++ |+..
T Consensus 1430 rg~~iei~g~~~sGkttl-~~~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~----Gv~~----------- 1483 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTL-TLQVIAAAQR-------EGKTCAFIDAEHALDPIY---ARKL----GVDI----------- 1483 (1706)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHHHH-------TTCCEEEECTTSCCCHHH---HHHT----TCCG-----------
T ss_pred CCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecCCCCCHHH---HHHc----CCCH-----------
Confidence 346799999999999985 4566655433 366678777755555432 3333 4432
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHc--cccccCceeEEEecchhhhhcCC----------ChHH-------HHHHHHhcC
Q 007090 341 QFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLG----------FEPQ-------IRSIVGQIR 401 (618)
Q Consensus 341 ~~~~l~~~~dIiv~Tp~~L~~~l~~--~~~~l~~~~~iIvDEah~~~~~~----------~~~~-------i~~i~~~~~ 401 (618)
.+++++-|..-...+.. ....-..+++||||.+-.+.... ..-+ ++++...+.
T Consensus 1484 --------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~ 1555 (1706)
T 3cmw_A 1484 --------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1555 (1706)
T ss_dssp --------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred --------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 13556655332222211 11122357899999988764321 1122 334444444
Q ss_pred CCccEEEEeccccHH
Q 007090 402 PDRQTLLFSATMPRK 416 (618)
Q Consensus 402 ~~~q~i~~SAT~~~~ 416 (618)
...-+++|...+...
T Consensus 1556 ~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1556 QSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHTCEEEEEECBC--
T ss_pred hCCcEEEEeeccccc
Confidence 555677777776543
No 299
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.64 E-value=5 Score=39.60 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=13.1
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++||||+|||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999975
No 300
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=59.42 E-value=11 Score=34.75 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999964
No 301
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=59.41 E-value=2.8 Score=50.32 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=33.4
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
+++-.++|+|||-.-+|......+...+.....++-+|+.+.-+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 45667899999988787777778888887777777667666544
No 302
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=59.41 E-value=10 Score=37.24 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=24.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
....+++.|++|+|||+. +-++...... .+.|.+.|-|.
T Consensus 24 ~~~~vLi~Ge~GtGKt~l--Ar~i~~~~~~-----~~~~~v~v~~~ 62 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV--ARALHACSAR-----SDRPLVTLNCA 62 (304)
T ss_dssp TTSCEEEESCTTSCHHHH--HHHHHHHSSC-----SSSCCCEEECS
T ss_pred CCCcEEEECCCCchHHHH--HHHHHHhCcc-----cCCCeEEEeCC
Confidence 567899999999999964 3344443221 23455555454
No 303
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=59.36 E-value=5 Score=40.10 Aligned_cols=20 Identities=45% Similarity=0.611 Sum_probs=17.4
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
+..|..+++.|+||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45788999999999999964
No 304
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=59.30 E-value=20 Score=40.34 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----c-------
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A------- 531 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~------- 531 (618)
.+.+++|.+++..-|.+.++.+.. .|+.++++.|+++..+|.... ...|+++|+ .+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 345899999999988887776654 489999999999987665543 368999994 33 1
Q ss_pred ccCCcCCccEEEE
Q 007090 532 RGLDIKSIKSVVN 544 (618)
Q Consensus 532 ~Gldi~~v~~VI~ 544 (618)
..+.+.+++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 2366778888773
No 305
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=59.11 E-value=6.6 Score=37.30 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=17.5
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.+.+++.||+|+|||+. +-++...
T Consensus 45 ~~~vll~G~~GtGKT~l--a~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL--AKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCeEEEECcCCCCHHHH--HHHHHHH
Confidence 35799999999999964 3344443
No 306
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=59.00 E-value=11 Score=36.70 Aligned_cols=18 Identities=28% Similarity=0.435 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+++.|++|+|||+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 567889999999999974
No 307
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=58.88 E-value=5.9 Score=35.51 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.5
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+..++++|++|||||++
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999975
No 308
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=58.75 E-value=10 Score=39.36 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
+.++||+||++.-|..+++.+... ++++..++|.. .......+.. ..+|+|||. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 567999999999999888877765 78888888843 3333344443 479999994 332 344566 7776
Q ss_pred E
Q 007090 377 V 377 (618)
Q Consensus 377 I 377 (618)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 309
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.61 E-value=6.8 Score=36.79 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=48.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc----cc---cCCcC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR---GLDIK 537 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~----~~---Gldi~ 537 (618)
..++||.+|++.-+..+++.+... ++.+..++|+..... .......+...|+|+|. .+ .+ .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999998888764 667777766432211 11122346678999993 22 12 47788
Q ss_pred CccEEEE
Q 007090 538 SIKSVVN 544 (618)
Q Consensus 538 ~v~~VI~ 544 (618)
.+++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888875
No 310
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=58.45 E-value=13 Score=38.61 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=40.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeCh
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATP 356 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp 356 (618)
+.++||+||++.-|..+++.+.+. ++++..++|. ........+. ...+|+|||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 446999999999999888887765 7888888876 3333334444 3579999994
No 311
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=58.43 E-value=5 Score=32.36 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~ 504 (618)
...+++|+|.+-..+...+..|...|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999998889999999999999988888875
No 312
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=57.99 E-value=5.4 Score=31.89 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
...+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999998999999999999999888888753
No 313
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=57.91 E-value=5.2 Score=33.53 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=31.4
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCCCH
Q 007090 471 GDVLVFA-SKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (618)
Q Consensus 471 ~~vLVF~-~~~~~~~~l~~~L~~~~~~~~~l~g~~~~ 506 (618)
.+++||| .+-..+...+..|...|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57778889999999999999999998753
No 314
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=57.75 E-value=7.3 Score=32.45 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHhcCCCCCCCcEEEEcCChhH--HHHHHHHHHhCCCcEEEEeCCCC
Q 007090 460 LLEKLPGMIDDGDVLVFASKKTT--VDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 460 l~~~l~~~~~~~~vLVF~~~~~~--~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
+...+.......+++|||.+-.. +...+..|...|+.+..+.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33444433345689999999776 88999999999999888888764
No 315
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.57 E-value=4.3 Score=36.04 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.0
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.++|++|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456688999999999975
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=57.50 E-value=5.2 Score=36.29 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.1
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 317
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=57.47 E-value=6.9 Score=36.31 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=19.1
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
..|+-+.++||+|+|||+. +-++..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTL--l~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL--IKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 4678899999999999964 4444443
No 318
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.42 E-value=12 Score=47.86 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH-H---HHHHHhcCCcEEEEeCCCCcHHHHH
Q 007090 232 FSTQLMHAISKQGYEKPTSIQC-Q---ALPIILSGRDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~-~---~i~~i~~~~dvl~~~~TGsGKT~~~ 279 (618)
+...+.+.+.+.++. +.+.+. . ....+.....+++.||||||||.++
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 344566666677764 455442 2 2334556778999999999999863
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.31 E-value=6.7 Score=35.22 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=17.4
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
+-+.+.||+|+|||+. +-+|..++
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHHC
T ss_pred CEEEEECCCCCCHHHH--HHHHHhhC
Confidence 4578999999999964 44554443
No 320
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.28 E-value=15 Score=47.64 Aligned_cols=55 Identities=11% Similarity=0.246 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH-HHH---HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 232 FSTQLMHAISKQGYEKPTSIQC-QAL---PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 232 l~~~l~~~l~~~~~~~~~~~Q~-~~i---~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
|...+...+.+.|+. +.+.+. .++ ..+.....+++.||||+|||.+ +.+|...+.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~--~~~L~~al~ 931 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTS--WEVYLEAIE 931 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHH--HHHHHHHHH
Confidence 445566677777774 444443 333 3344666789999999999986 555665554
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.08 E-value=7.1 Score=34.72 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=17.6
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
-.++.|++|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 568899999999965 55666654
No 322
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=56.84 E-value=7.5 Score=34.89 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.6
Q ss_pred HhcCCcEEEEeCCCCcHHHH
Q 007090 259 ILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 259 i~~~~dvl~~~~TGsGKT~~ 278 (618)
+..+.-++++|++|||||++
T Consensus 6 m~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHH
T ss_pred CcCCCEEEEECCCCCCHHHH
Confidence 34567799999999999975
No 323
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=56.80 E-value=7.6 Score=33.62 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=17.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
-.++.||+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 468899999999965 55555554
No 324
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.42 E-value=6 Score=38.48 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=15.2
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||+.
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999965
No 325
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=56.28 E-value=12 Score=35.07 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.2
Q ss_pred cEEEEeCCCCcHHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFV 280 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~ 280 (618)
.+++.++.|+|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58889999999997643
No 326
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=56.24 E-value=10 Score=45.01 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=31.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 266 l~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
++.|..|||||.+. +.-+.+++... ..+..+|+|||.. +..++...+...
T Consensus 5 lV~agAGSGKT~~l-~~ri~~ll~~~----~~~~~il~lVP~q-~TFt~~~rl~~~ 54 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLI-INSIQDELRRA----PFGKPIIFLVPDQ-MTFLMEYELAKT 54 (1166)
T ss_dssp EEEECTTSSHHHHH-HHHHHHHHHHC----TTSSCEEEECCGG-GHHHHHHHHTCC
T ss_pred EEEeCCCCChHHHH-HHHHHHHHHhC----CCCCcEEEEecCc-ccHHHHHHHHHh
Confidence 78899999999863 44444444321 2346799999975 333454444443
No 327
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=56.12 E-value=6.4 Score=34.40 Aligned_cols=15 Identities=20% Similarity=-0.106 Sum_probs=13.2
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++|++|||||++
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 328
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=56.07 E-value=7.8 Score=38.09 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.+.-+.+.|++|+|||+. +..+..++
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 456788999999999975 44444444
No 329
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.06 E-value=13 Score=33.97 Aligned_cols=18 Identities=28% Similarity=0.130 Sum_probs=15.2
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+++.|++|+|||..
T Consensus 19 ~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456789999999999975
No 330
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.04 E-value=9.5 Score=45.79 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=33.7
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEeccc
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 413 (618)
+++-.++|+||+=.-+|...+..+...+..+..++-+|+.|.-+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccH
Confidence 55678999999998888887888888777776666666665443
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=55.83 E-value=6.6 Score=34.65 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.1
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++|++|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999975
No 332
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=55.70 E-value=8.3 Score=36.77 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=20.0
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+.++.+++.|++|+|||++ .-+|...
T Consensus 46 l~g~~i~l~G~~GsGKSTl--~~~La~~ 71 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV--GKIMARS 71 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH--HHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHHh
Confidence 4589999999999999975 4444443
No 333
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=55.63 E-value=7.2 Score=35.46 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=18.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.+.-++++|++|||||+. +-+|...
T Consensus 28 ~g~~i~l~G~~GsGKSTl--~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI--AHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHHh
Confidence 467789999999999975 4444443
No 334
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=55.52 E-value=6.3 Score=39.13 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.4
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.++++|+||+|||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 335
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=55.28 E-value=6.7 Score=39.46 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999975
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=54.69 E-value=7.6 Score=35.54 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=20.2
Q ss_pred HHhcCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 258 ~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.+..|.-+.+.||+|+|||+. +-++.-++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 466788899999999999964 44555444
No 337
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=54.54 E-value=7.6 Score=36.14 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHhcCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 258 ~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.+..|+-++++||.|+|||+. +-++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL--lk~L~g~ 39 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL--IQALLKT 39 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH--HHHHhcc
Confidence 355778899999999999964 4444443
No 338
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.46 E-value=6.5 Score=34.71 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+..++++|++|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999975
No 339
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=53.65 E-value=9.5 Score=34.04 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=15.0
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++|.+|||||++
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 345688999999999975
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.59 E-value=6.2 Score=35.78 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++|++|||||++
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999976
No 341
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=53.12 E-value=7.6 Score=36.32 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
....+++.|++|||||++
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345789999999999976
No 342
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=52.41 E-value=7.6 Score=38.83 Aligned_cols=16 Identities=38% Similarity=0.316 Sum_probs=13.6
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
-++++|+||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999753
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=52.26 E-value=7.2 Score=34.88 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.4
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+.-++++|++|||||++
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34588999999999976
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=52.13 E-value=6.9 Score=35.62 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.2
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-+++.|++|||||++
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 455689999999999975
No 345
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=51.62 E-value=9.9 Score=38.38 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.+.-+.+.|++|+|||+. +..+..++
T Consensus 156 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 455788999999999975 44444444
No 346
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=51.53 E-value=11 Score=38.18 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=18.4
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
....+++.||+|+|||.. +-++...
T Consensus 71 ~~~~ill~Gp~GtGKT~l--a~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLM--AQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCCEEEECCCCCCHHHH--HHHHHHH
Confidence 346899999999999965 3344444
No 347
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.48 E-value=10 Score=33.94 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=16.3
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.+.+.||+|+|||+. +-++..++
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 468899999999964 44444443
No 348
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=51.45 E-value=12 Score=34.37 Aligned_cols=29 Identities=21% Similarity=0.067 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCcHHHH
Q 007090 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 249 ~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~ 278 (618)
++.++.. ..+..+.-++++|++|+|||++
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 4455554 3345667789999999999975
No 349
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=51.43 E-value=8.5 Score=34.93 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=14.2
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.-++++|++|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999975
No 350
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.38 E-value=11 Score=34.04 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.7
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
|..+.+.+++|+|||+. +.++..++
T Consensus 1 G~~i~i~G~nG~GKTTl--l~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL--IHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHH--HHHHHHHH
T ss_pred CCEEEEECCCCChHHHH--HHHHHhhc
Confidence 35678999999999974 44444443
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=51.19 E-value=8.9 Score=34.25 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.4
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+.-++++|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999975
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.03 E-value=9.7 Score=34.19 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++|++|||||++
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999975
No 353
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=50.99 E-value=8 Score=35.12 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-+.+.|++|||||+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999975
No 354
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.79 E-value=8.2 Score=40.39 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
++.+++.||+|+|||+.
T Consensus 63 ~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 36899999999999965
No 355
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=50.70 E-value=8.4 Score=35.25 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=18.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.+.-+.+.|++|||||+. +-++..++
T Consensus 21 ~g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 345678899999999964 44444443
No 356
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=50.53 E-value=27 Score=39.18 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhh-------cCceEEEEECCCChHHHHHHHH---------cCCcEEEeChHHHHH
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKS-------HGIRVSAVYGGMSKLDQFKELK---------AGCEIVIATPGRLID 361 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~-------~~~~~~~~~gg~~~~~~~~~l~---------~~~dIiv~Tp~~L~~ 361 (618)
+..+||.+|++.-+..++..+.+.+.. .++.+..++|+.+..++...+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 567999999999999998888764322 4778889999988766644332 2357999994
Q ss_pred HHHccccccCceeEEEe
Q 007090 362 MLKMKALTMSRVTYLVL 378 (618)
Q Consensus 362 ~l~~~~~~l~~~~~iIv 378 (618)
.+. ..+.+..+.+||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 332 3445677776663
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=50.51 E-value=10 Score=37.53 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.7
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.++-+++.+++|+|||+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp SCEEEEEESSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678899999999975
No 358
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=50.24 E-value=27 Score=34.51 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=17.8
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
-+.+.|++|||||+. +-++..++.
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhc
Confidence 467899999999964 555666554
No 359
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=50.05 E-value=9.9 Score=36.60 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.3
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+.+++.||+|+|||+. +-++...
T Consensus 74 ~gvll~Gp~GtGKTtl--~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL--ARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCcChHHHH--HHHHHHH
Confidence 4599999999999964 4455544
No 360
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=50.00 E-value=9.5 Score=33.97 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=13.2
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++|++|||||++
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 361
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=49.95 E-value=11 Score=34.65 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.6
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
.+++.||+||||++++
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999864
No 362
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=49.76 E-value=9.4 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.4
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.-++++|++|+|||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468899999999975
No 363
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=55.09 E-value=3.5 Score=36.55 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=46.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---HH-cCCcEEEeChHHHHHHHHccccccCce
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~ 373 (618)
+.++||.|+++..|..++..+... ++.+..++|+.+..+.... +. ....|+|||. .+ ...+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPDV 99 (170)
Confidence 467999999999998887777665 7778888887655433222 22 2467899983 22 223345566
Q ss_pred eEEEe
Q 007090 374 TYLVL 378 (618)
Q Consensus 374 ~~iIv 378 (618)
.+||.
T Consensus 100 ~~Vi~ 104 (170)
T 2yjt_D 100 SHVFN 104 (170)
Confidence 66664
No 364
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=49.37 E-value=22 Score=40.12 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----cc-C-CcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~G-l-di~~ 538 (618)
.+++||.||+..-+..+.+.++.. ++.+..+||+.+...+...+. +...|+|+|. .+. ++ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 578999999998888877777654 899999999987655433221 2478999993 332 22 3 5666
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 365
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=49.30 E-value=11 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.5
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
-.++.|++|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4689999999999853
No 366
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.26 E-value=11 Score=33.31 Aligned_cols=15 Identities=40% Similarity=0.538 Sum_probs=13.6
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++++++|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 689999999999975
No 367
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.22 E-value=9.8 Score=33.26 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.4
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+.+++.|.+|||||++
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999976
No 368
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=49.20 E-value=11 Score=34.69 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..+++.|++|||||++
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999976
No 369
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=49.05 E-value=19 Score=30.06 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCc-EEEEeCCCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~-~~~l~g~~~ 505 (618)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988899999999999985 888999874
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.96 E-value=10 Score=35.12 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.7
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
...++++|++|||||++
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999975
No 371
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=48.87 E-value=87 Score=31.90 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=22.1
Q ss_pred HHHHHHHHHHh---cCCcEEEEeCCCCcHHHH
Q 007090 250 SIQCQALPIIL---SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 250 ~~Q~~~i~~i~---~~~dvl~~~~TGsGKT~~ 278 (618)
..=..++..++ .|+.+.+.+++|+|||..
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 33445556554 788999999999999975
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=48.87 E-value=11 Score=33.45 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=17.9
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.|.-+++.|++|||||++ +-+|...
T Consensus 4 ~g~~i~l~G~~GsGKST~--~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV--SMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHHH
Confidence 456688999999999975 3444443
No 373
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=48.76 E-value=11 Score=37.42 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=17.9
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
..+++.||+|+|||+. +-++...+
T Consensus 52 ~~~ll~Gp~G~GKTTL--a~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL--AHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHH--HHHHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHHHh
Confidence 6799999999999964 44444443
No 374
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=48.75 E-value=20 Score=40.17 Aligned_cols=70 Identities=7% Similarity=-0.015 Sum_probs=50.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----ccc-----
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARG----- 533 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~~G----- 533 (618)
.+.+++|.+||..-|.+.+..+.. .|+.++++.|+++...|.... ...|+|+|+ .+ ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 345899999999988777766644 489999999999986555433 378999995 33 122
Q ss_pred --CCcCCccEEEE
Q 007090 534 --LDIKSIKSVVN 544 (618)
Q Consensus 534 --ldi~~v~~VI~ 544 (618)
+...++.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 55677887773
No 375
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=48.69 E-value=9.4 Score=39.12 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.3
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
-+++.||||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3688999999999753
No 376
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=48.68 E-value=12 Score=29.99 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCc-EEEEeCCCCH
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQ 506 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~-~~~l~g~~~~ 506 (618)
...+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 3568999999988999999999999995 8889888643
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.66 E-value=11 Score=34.83 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+..+++.|++|||||++
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999976
No 378
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=48.64 E-value=19 Score=31.93 Aligned_cols=15 Identities=27% Similarity=0.096 Sum_probs=12.6
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-+.+.++.|||||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999964
No 379
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=48.61 E-value=11 Score=34.29 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=17.1
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
+.-+.+.|++|||||+. +-++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHH
Confidence 44577899999999964 4444443
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=48.25 E-value=11 Score=33.65 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.4
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++|++|||||++
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999975
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=48.09 E-value=10 Score=35.18 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHHH
Q 007090 262 GRDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~ 279 (618)
.+-+++.||+||||+++.
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356788999999999864
No 382
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=48.04 E-value=15 Score=39.00 Aligned_cols=71 Identities=14% Similarity=0.352 Sum_probs=49.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----cc-C-CcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~G-l-di~~ 538 (618)
.+++||.+|++.-+..+++.+... ++.+..++|+.+...+...+. +...|+|+|. .+. .+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999988877777776654 899999999986554422221 1367999993 332 22 3 5667
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788775
No 383
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.97 E-value=14 Score=36.58 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=12.8
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-+++.|+.|+|||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999974
No 384
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=47.74 E-value=12 Score=34.18 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=17.8
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhc
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~ 289 (618)
-.++.|++|+|||.. +-++.+++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 468899999999965 555555554
No 385
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=47.71 E-value=12 Score=36.75 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.0
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.|..+.+.||+|+|||+. +-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 678889999999999964 55555554
No 386
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=47.60 E-value=1.5e+02 Score=30.73 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=46.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH---HHH-cCCcEEEeChHHHHHHHHccccccCcee
Q 007090 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSRVT 374 (618)
Q Consensus 299 ~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~ 374 (618)
...+|++.++.-+..+.+.+.. .+.++..++|+.+..+... .+. ...+|+|||+..+.. .+++..+.
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 3344444445555545444443 3568888888877554322 222 346899999755533 44678899
Q ss_pred EEEecchh
Q 007090 375 YLVLDEAD 382 (618)
Q Consensus 375 ~iIvDEah 382 (618)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99987766
No 387
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=47.58 E-value=10 Score=38.14 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
..+.+++.||+|+|||+.
T Consensus 116 ~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCSEEEEESSTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 346899999999999975
No 388
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=47.24 E-value=13 Score=33.07 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.9
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..++++|++|||||++
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999975
No 389
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.99 E-value=11 Score=34.55 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.2
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999976
No 390
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=46.78 E-value=20 Score=39.44 Aligned_cols=70 Identities=16% Similarity=0.373 Sum_probs=49.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----cc-C-CcCCc
Q 007090 471 GDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKSI 539 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~G-l-di~~v 539 (618)
+++||.+|++.-+....+.+.+. ++.+..++|+.+...+...+ . ....|+|+|. ++. .+ + .+..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999988888777777654 78999999988643322222 1 2478999993 332 23 3 56677
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88885
No 391
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=46.54 E-value=1.3e+02 Score=30.37 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCcEEEEeCCCC-cHHHHHHHHHHHHHhcCCccccCCCC-eEEEEcccHHHHHHHHHHHHHHHhhcCceEE
Q 007090 253 CQALPIILSGRDIIGIAKTGS-GKTAAFVLPMIVHIMDQPELQKEEGP-IGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (618)
Q Consensus 253 ~~~i~~i~~~~dvl~~~~TGs-GKT~~~~l~~l~~~~~~~~~~~~~~~-~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~ 330 (618)
...+...+.++.+++.|.||. |..++ .++... |+ .++++.-...-..++...+.......+..+.
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~~-------g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~ 92 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVT------KEIFKR-------NPQKLHVVDISENNMVELVRDIRSSFGYINGDFQ 92 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHH------HHHHTT-------CCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHH------HHHHHC-------CCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEE
Confidence 344556678899999999986 76654 333322 53 5566655555555555555544332235666
Q ss_pred EEECCCChHHHHHHHH--cCCcEEEeC
Q 007090 331 AVYGGMSKLDQFKELK--AGCEIVIAT 355 (618)
Q Consensus 331 ~~~gg~~~~~~~~~l~--~~~dIiv~T 355 (618)
.+.+..........+. .++|+||-.
T Consensus 93 ~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 93 TFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp EECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 7777766665544444 467877754
No 392
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=46.37 E-value=8.4 Score=35.90 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=11.6
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.||+|+|||+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999975
No 393
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=46.18 E-value=23 Score=34.29 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=16.9
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
..+++.||+|+|||.. +-++...
T Consensus 48 ~~~ll~G~~GtGKt~l--a~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL--AKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHH--HHHHHHH
T ss_pred eEEEEECCCCcCHHHH--HHHHHHH
Confidence 3689999999999965 3344443
No 394
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.16 E-value=12 Score=37.78 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
-.+++|+||+|||.. +-++.+
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 468899999999975 555555
No 395
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.99 E-value=5.9 Score=37.88 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35689999999999965
No 396
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=45.96 E-value=16 Score=36.82 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=17.9
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4555677765 46678999999965
No 397
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=45.90 E-value=4.8 Score=44.69 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=46.7
Q ss_pred CcEEEEcCChhHHHHH-HHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cccc-----------cC
Q 007090 471 GDVLVFASKKTTVDEI-ESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAAR-----------GL 534 (618)
Q Consensus 471 ~~vLVF~~~~~~~~~l-~~~L~~~~---~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~~-----------Gl 534 (618)
+++||.+|+..-+... ++.|++.. +.+..++|+.+..++...+. +...|||+|. .+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999888777 77776653 89999999987554332222 5688999993 3332 34
Q ss_pred CcCCccEEEE
Q 007090 535 DIKSIKSVVN 544 (618)
Q Consensus 535 di~~v~~VI~ 544 (618)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888884
No 398
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.88 E-value=12 Score=33.78 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=16.0
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~ 287 (618)
.+++.|++|||||++ .-.|...
T Consensus 2 ~I~i~G~~GsGKsT~--~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI--SAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHH--HHHHHHH
T ss_pred EEEEECCCccCHHHH--HHHHHHh
Confidence 378899999999975 4444443
No 399
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.85 E-value=12 Score=34.39 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=13.2
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999976
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=45.69 E-value=13 Score=32.49 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.9
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
+.+++.|++|||||++
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999975
No 401
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=45.61 E-value=13 Score=33.76 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++|+.|||||++
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456789999999999975
No 402
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=45.52 E-value=48 Score=36.48 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=53.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChH---HHHHHHHc---CCcEEEeChHHHHHHHHccccccCc
Q 007090 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKA---GCEIVIATPGRLIDMLKMKALTMSR 372 (618)
Q Consensus 299 ~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~dIiv~Tp~~L~~~l~~~~~~l~~ 372 (618)
+..+|+++|+.-+.++++.+.+. ++.+..++|+.+.. .+...+.. ..+|+|||. .+. ..+++ .
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~ 389 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-S 389 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-C
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-C
Confidence 34467799998888777777664 78899999998876 44444553 379999995 433 34567 7
Q ss_pred eeEEEecchhhh
Q 007090 373 VTYLVLDEADRM 384 (618)
Q Consensus 373 ~~~iIvDEah~~ 384 (618)
+.+||+-.+.+.
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 888888777653
No 403
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=45.43 E-value=12 Score=33.95 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.6
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-++++|+.|||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999975
No 404
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=45.33 E-value=34 Score=39.35 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=45.7
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----cc-C-CcCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~G-l-di~~ 538 (618)
.+++||.+|+..-+..++..|+.. ++.+..+||+.+...+...+. +...|+|+|. .+. ++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999998887777777654 899999999987654322221 1367999993 332 22 3 4566
Q ss_pred ccEEEE
Q 007090 539 IKSVVN 544 (618)
Q Consensus 539 v~~VI~ 544 (618)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=45.26 E-value=13 Score=33.57 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=14.0
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
..++++|++|||||++
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999975
No 406
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.19 E-value=10 Score=36.83 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.8
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.-++++|++|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999975
No 407
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=45.06 E-value=17 Score=38.51 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=25.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
.|.-+++.|++|+|||. +++-++.++... .+.+|+++.-
T Consensus 241 ~G~l~li~G~pG~GKT~-lal~~a~~~a~~------~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMST-FVRQQALQWGTA------MGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHH-HHHHHHHHHTTT------SCCCEEEEES
T ss_pred CCeEEEEeecCCCCchH-HHHHHHHHHHHh------cCCcEEEEec
Confidence 45678999999999996 445555554322 1445777653
No 408
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=44.84 E-value=16 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=31.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCc-EEEEeCCCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~-~~~l~g~~~ 505 (618)
..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 568999999998999999999999995 888888754
No 409
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=44.73 E-value=18 Score=30.87 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCcEEEEcCCh--hHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 469 DDGDVLVFASKK--TTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 469 ~~~~vLVF~~~~--~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
...+++|||.+- ..+...+..|+..|+++..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356899999987 5889999999999999999999864
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=44.66 E-value=14 Score=34.05 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.5
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+..+++.|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34689999999999976
No 411
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=44.63 E-value=26 Score=37.14 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.++++.|.||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 457899999999999975
No 412
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=44.62 E-value=24 Score=35.21 Aligned_cols=44 Identities=16% Similarity=0.011 Sum_probs=24.9
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcc
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~P 306 (618)
.|.-+++.|++|+|||.. ++.+...+.. +....+.+.+++++.-
T Consensus 121 ~G~i~~I~G~~GsGKTtl-a~~la~~~~~-~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQL-SHTLCVTAQL-PGAGGYPGGKIIFIDT 164 (343)
T ss_dssp SSEEEEEECCTTCTHHHH-HHHHHHHTTS-CBTTTBCCCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHhc-ccccCCCCCeEEEEEC
Confidence 346789999999999974 3333333211 1111113456777754
No 413
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=44.59 E-value=14 Score=32.37 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=19.6
Q ss_pred hcCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
..|.-+.+.||.|+|||+. +-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 3566788999999999963 55555554
No 414
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=44.47 E-value=57 Score=33.78 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=18.8
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.+++++.||+|+|||+. .-++...+
T Consensus 50 ~~~iLl~GppGtGKT~l--ar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI--ARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHH--HHHHHHHT
T ss_pred CceEEEEcCCCCCHHHH--HHHHHHHc
Confidence 46899999999999964 44455544
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=44.31 E-value=13 Score=33.66 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.3
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
-++++|++|||||++
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 416
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=44.25 E-value=13 Score=33.63 Aligned_cols=71 Identities=17% Similarity=0.360 Sum_probs=42.7
Q ss_pred CCcEEEEcCChhHHHH-HHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc----c-------c
Q 007090 470 DGDVLVFASKKTTVDE-IESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----R-------G 533 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~-l~~~L~~---~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~----~-------G 533 (618)
.+++||+||+..-+.. +.+.+.. .++.+..++|+.....+...+. +...|+|+|. .+. . +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5689999999888776 5555543 3678999998765432221111 1467999993 322 2 2
Q ss_pred CCcCCccEEEE
Q 007090 534 LDIKSIKSVVN 544 (618)
Q Consensus 534 ldi~~v~~VI~ 544 (618)
+.+..++.||.
T Consensus 158 ~~~~~~~~iIi 168 (216)
T 3b6e_A 158 VQLSDFSLIII 168 (216)
T ss_dssp CCGGGCSEEEE
T ss_pred cchhcccEEEE
Confidence 55666777774
No 417
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=43.99 E-value=13 Score=33.99 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=13.2
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999976
No 418
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=43.88 E-value=54 Score=31.72 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=50.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-ccc-----ccCCcCCc
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA-----RGLDIKSI 539 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~~-----~Gldi~~v 539 (618)
..++||.+|++.-+..+++.+++. +..+..++|+.+....... +. ...|+|+|. .+. ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 568999999999999988888753 5789999999887654433 22 378999993 222 23456667
Q ss_pred cEEEE
Q 007090 540 KSVVN 544 (618)
Q Consensus 540 ~~VI~ 544 (618)
+.||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 419
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.82 E-value=13 Score=37.48 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.5
Q ss_pred cEEEEeCCCCcHHHHH
Q 007090 264 DIIGIAKTGSGKTAAF 279 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~ 279 (618)
-.+++||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999753
No 420
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=43.72 E-value=12 Score=39.03 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=31.1
Q ss_pred ccCCccccCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 223 PVKTFEDCGFSTQLMHAISKQGY---EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 223 p~~~~~~~~l~~~l~~~l~~~~~---~~~~~~Q~~~i~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
|-.+|.++.-...+.+.|...-. ..+.-++ ......+.+++.||+|+|||+. +-++..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~l--A~aia~ 189 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL--AKAVAT 189 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHH--HHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHH--HHHHHH
Confidence 44678887666665555542100 0000000 0012336899999999999964 334444
No 421
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=43.41 E-value=13 Score=34.22 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=16.3
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
..+.+.|++|||||+. .-+|..
T Consensus 6 ~~i~i~G~~GsGKSTl--~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL--CKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHH
T ss_pred eEEEEECCCCCCHHHH--HHHHHH
Confidence 4588999999999975 444443
No 422
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=43.37 E-value=18 Score=35.85 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=17.6
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3445667765 46688999999965
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=42.93 E-value=14 Score=32.11 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=15.6
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVH 286 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~ 286 (618)
.+++.|.+|||||++ .-.|..
T Consensus 2 ~I~l~G~~GsGKsT~--a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV--GSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 478999999999975 334444
No 424
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=42.79 E-value=66 Score=28.23 Aligned_cols=65 Identities=11% Similarity=0.328 Sum_probs=51.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecccccccCCcCCccEEEEcCCCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~~~~~Gldi~~v~~VI~~~~p~ 549 (618)
.+.+.|.|.+..++..+...|...|+++..+.+.... + ...|.|.|--.+.|+.+ +.||.+++..
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~---------~---~~~v~v~t~~~~KGlEf---~~V~~~~~~~ 125 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQR---------L---APGVIVVPSFLAKGLEF---DAVIVWNANQ 125 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-C---------C---CSSEEEEEGGGCTTCCE---EEEEEETCBT
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccc---------c---CCCeEEEEccccCCcCC---CEEEEecCCc
Confidence 4689999999999999999999999998877764421 2 23689999888899987 6788777543
No 425
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=42.73 E-value=14 Score=33.35 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=13.1
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478899999999975
No 426
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=42.60 E-value=14 Score=32.84 Aligned_cols=14 Identities=43% Similarity=0.363 Sum_probs=12.6
Q ss_pred EEEEeCCCCcHHHH
Q 007090 265 IIGIAKTGSGKTAA 278 (618)
Q Consensus 265 vl~~~~TGsGKT~~ 278 (618)
++++|.+|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999975
No 427
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.46 E-value=19 Score=36.90 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=18.5
Q ss_pred HHHHHhcCCcE--EEEeCCCCcHHHH
Q 007090 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~dv--l~~~~TGsGKT~~ 278 (618)
.+..++.|.++ +..|.||||||.+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceE
Confidence 56667788764 5678999999965
No 428
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.42 E-value=16 Score=36.16 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=18.8
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
....+++.|++|+|||.. +-++...+
T Consensus 44 ~~~~vLl~G~~GtGKT~l--a~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA--VRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHH--HHHHHHHS
T ss_pred CCceEEEECCCCccHHHH--HHHHHHhC
Confidence 346799999999999964 44444443
No 429
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=42.37 E-value=14 Score=33.45 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=12.9
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+.+.|++|||||++
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999975
No 430
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=42.26 E-value=14 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.||+|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999964
No 431
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=42.23 E-value=17 Score=36.33 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=16.8
Q ss_pred HHHHhcCCcE--EEEeCCCCcHHHH
Q 007090 256 LPIILSGRDI--IGIAKTGSGKTAA 278 (618)
Q Consensus 256 i~~i~~~~dv--l~~~~TGsGKT~~ 278 (618)
+..++.|.++ +..|.||||||.+
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 4445677654 6678999999965
No 432
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=42.18 E-value=14 Score=34.76 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
..-++++|++|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999975
No 433
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.14 E-value=11 Score=33.20 Aligned_cols=17 Identities=29% Similarity=0.120 Sum_probs=10.7
Q ss_pred CCcEEEEeCCCCcHHHH
Q 007090 262 GRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~ 278 (618)
+.-++++|.+|||||++
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999976
No 434
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=41.96 E-value=15 Score=33.35 Aligned_cols=18 Identities=33% Similarity=0.017 Sum_probs=14.7
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.+.-+.+.|++|||||+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678999999999975
No 435
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=41.66 E-value=15 Score=34.67 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.1
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
....+++.|+.|||||++
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345689999999999976
No 436
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=41.65 E-value=22 Score=38.70 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHhcCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 257 ~~i~~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
..+..+..+++.||+|+|||+. +-++..++
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 4456788999999999999964 44444444
No 437
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=41.60 E-value=20 Score=36.20 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=17.3
Q ss_pred HHHHHhcCCcE--EEEeCCCCcHHHH
Q 007090 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~dv--l~~~~TGsGKT~~ 278 (618)
.+..++.|.++ +..|.||||||.+
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34456677654 5678999999965
No 438
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=41.54 E-value=20 Score=39.51 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=46.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHc-CCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
+.++||+||++.-|..+++.+.+. ++++..++|. .+......+.. ..+|+|||. .+. ..+++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh-cceeeC-CcEE
Confidence 567999999999998887776654 7888888884 33333333333 478999994 333 334455 6665
Q ss_pred E
Q 007090 377 V 377 (618)
Q Consensus 377 I 377 (618)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 439
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=41.30 E-value=21 Score=35.95 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=17.7
Q ss_pred HHHHHhcCCcE--EEEeCCCCcHHHH
Q 007090 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~dv--l~~~~TGsGKT~~ 278 (618)
.+..++.|.++ +..|.||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 44556777654 5578999999965
No 440
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=41.24 E-value=21 Score=35.79 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=17.4
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 3445667765 45688999999965
No 441
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=41.22 E-value=15 Score=32.77 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.6
Q ss_pred EEEEeCCCCcHHHH
Q 007090 265 IIGIAKTGSGKTAA 278 (618)
Q Consensus 265 vl~~~~TGsGKT~~ 278 (618)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999976
No 442
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=41.22 E-value=20 Score=37.25 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=44.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
+.++||.||++.-|.++++.+.+. ++.+..+++... ......+. ...+|+|||. .+. ..+++.. .+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~-~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE-MGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG-SSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH-hCcCCCC-CEE
Confidence 446999999999998887777654 778877777543 22323333 3479999994 333 3344555 555
Q ss_pred E
Q 007090 377 V 377 (618)
Q Consensus 377 I 377 (618)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 4
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=41.21 E-value=15 Score=34.00 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.1
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999976
No 444
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=41.19 E-value=15 Score=35.07 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=13.8
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.-++++|.+|||||+.
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4588999999999975
No 445
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=41.17 E-value=20 Score=36.13 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.0
Q ss_pred HHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 256 LPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 256 i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
+..++.|.+ ++..|.||||||.+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 445667765 46688999999965
No 446
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=40.94 E-value=21 Score=35.84 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=16.8
Q ss_pred HHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 256 LPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 256 i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
+..++.|.+ ++..|.||||||.+
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEE
Confidence 444667765 45688999999965
No 447
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=40.87 E-value=30 Score=37.07 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=18.9
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 262 ~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.-++++.|.||||||.+ +..++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999975 344444443
No 448
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=40.76 E-value=21 Score=35.52 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.2
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 5566778875 45688999999965
No 449
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=40.67 E-value=26 Score=29.90 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=31.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~-~~~~l~g~~~ 505 (618)
..+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 56899999998888899999999999 5899999874
No 450
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=40.61 E-value=33 Score=33.90 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=26.2
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~L 310 (618)
-+++.+++|+|||.. ++.++..+... ..+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc-----CCCceEEEEeccchh
Confidence 578999999999974 45555544321 125568887654433
No 451
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=40.32 E-value=38 Score=36.88 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=46.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHH-cCCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
+.++||.|+|+.-|..+++.+.+. ++++..++|. .....+..+. ...+|+|||. .+.+ .+++. +.+|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 457999999999999888777765 7888888774 3333444444 3578999995 3333 33453 6655
Q ss_pred E
Q 007090 377 V 377 (618)
Q Consensus 377 I 377 (618)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 452
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=40.31 E-value=19 Score=36.26 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=14.5
Q ss_pred cCCc--EEEEeCCCCcHHHH
Q 007090 261 SGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~d--vl~~~~TGsGKT~~ 278 (618)
.|.+ ++..|.||||||.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4665 57889999999965
No 453
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=40.25 E-value=30 Score=30.71 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.2
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.-+++.|+.|+|||+.
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3578899999999964
No 454
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=40.20 E-value=19 Score=37.73 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
...++++.||+|+|||..
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 345899999999999975
No 455
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=40.20 E-value=22 Score=35.72 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=17.8
Q ss_pred HHHHHhcCCcE--EEEeCCCCcHHHH
Q 007090 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~dv--l~~~~TGsGKT~~ 278 (618)
.+..++.|.++ +..|.||||||.+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 44556778654 6678999999965
No 456
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=40.05 E-value=22 Score=36.48 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=17.4
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 3445667765 46688999999965
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=39.90 E-value=17 Score=32.66 Aligned_cols=15 Identities=33% Similarity=0.271 Sum_probs=13.1
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.+.+.+++|||||++
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 458
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=39.89 E-value=22 Score=35.94 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=17.3
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3445677765 45678999999965
No 459
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=39.67 E-value=21 Score=35.86 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=16.8
Q ss_pred HHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 256 LPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 256 i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
+..++.|.+ ++..|.||||||.+
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 344567765 46688999999965
No 460
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=39.62 E-value=22 Score=35.58 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=16.9
Q ss_pred HHHHhcCCcE--EEEeCCCCcHHHH
Q 007090 256 LPIILSGRDI--IGIAKTGSGKTAA 278 (618)
Q Consensus 256 i~~i~~~~dv--l~~~~TGsGKT~~ 278 (618)
+..++.|.++ +..|.||||||.+
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 4456677654 5678999999965
No 461
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.61 E-value=11 Score=33.52 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=15.8
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
-+.+.+++|||||+. +-++..++
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 467889999999965 33344443
No 462
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=39.57 E-value=21 Score=35.88 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=17.5
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 3445667765 46678999999965
No 463
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=39.37 E-value=36 Score=38.47 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEecc-cc-----c-------c
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A-------R 532 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT~-~~-----~-------~ 532 (618)
+.+++|.+++..-|.+.+..+.. .|+.++++.|+++..+|.... ...|+++|+ .+ . .
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~ 225 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLD 225 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHh
Confidence 45899999999888777766654 589999999999987665543 368999994 33 1 1
Q ss_pred cCCcCCccEEEE
Q 007090 533 GLDIKSIKSVVN 544 (618)
Q Consensus 533 Gldi~~v~~VI~ 544 (618)
.+...++.++|.
T Consensus 226 ~l~lr~l~~lIV 237 (922)
T 1nkt_A 226 DLVQRGHHYAIV 237 (922)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhccCCCCEEEE
Confidence 356677887773
No 464
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=39.33 E-value=41 Score=27.19 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=34.6
Q ss_pred CCeEEEEcccHHHHHHHHH-HHHHHHhhcCce-EEEEECCCChHHHHHHHHcCCcEEEeChH
Q 007090 298 GPIGVICAPTRELAHQIYL-ETKKFAKSHGIR-VSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~-~~~~~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~ 357 (618)
..++|++|++---...+.. .+++.++..++. +.....+.... ......+|+||+||.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~---~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEA---KGLASNYDIVVASNH 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHH---HHHGGGCSEEEEETT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHH---hhccCCCcEEEECCc
Confidence 3568999997655555555 677777776776 43333222221 122346899999983
No 465
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=39.33 E-value=36 Score=27.33 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~ 505 (618)
..+++|||.+-..+...+..|...|+....+.|++.
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 568999999999999999999999986678888864
No 466
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=39.30 E-value=16 Score=32.60 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|+.++++++.|+|||..
T Consensus 15 ~G~gvli~G~SGaGKStl 32 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSEL 32 (181)
T ss_dssp TTEEEEEEESSSSSHHHH
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 467899999999999965
No 467
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=39.09 E-value=23 Score=38.83 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHHHcCCcEEEeChHHHHHHHHccccccCceeEE
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~i 376 (618)
.+.++||.|+|+.-+.++++.+.+. ++.+..++|+...... ...+.+|+|||. .+.+.- ++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerGI-DId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTGY-TGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHHC-CCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHccC-CCC-CcEE
Confidence 4678999999999999887777664 7899999998776532 234579999994 343332 243 6666
Q ss_pred E
Q 007090 377 V 377 (618)
Q Consensus 377 I 377 (618)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 5
No 468
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.03 E-value=40 Score=33.91 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=15.4
Q ss_pred ChHHHHHHHHccccccCceeEEEecch
Q 007090 355 TPGRLIDMLKMKALTMSRVTYLVLDEA 381 (618)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~~~~iIvDEa 381 (618)
++..+..++..-. .+..+++||||=.
T Consensus 243 ~~~~~~~ll~~l~-~~~~yD~VIID~p 268 (373)
T 3fkq_A 243 SYADIDTLIGNIQ-GMDNYDEIIVDLP 268 (373)
T ss_dssp CHHHHHHHHHHHH-HTSCCSEEEEECC
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEeCC
Confidence 5555555543211 2357899999944
No 469
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=38.65 E-value=58 Score=26.04 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=35.0
Q ss_pred CCCcEEEEcC------ChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 007090 469 DDGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (618)
Q Consensus 469 ~~~~vLVF~~------~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~ 514 (618)
...+|+||.. .--.|.++.+.|...|+.+..++=......+....+
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 4679999998 478999999999999998887765555555544443
No 470
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=38.46 E-value=18 Score=34.18 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=17.3
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIV 285 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~ 285 (618)
.+..+.+.|++|||||+. +-+|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl--~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL--CKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHH--HHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHH
Confidence 456788999999999975 44444
No 471
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=38.42 E-value=52 Score=26.54 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=34.9
Q ss_pred CCCcEEEEc------CChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 007090 469 DDGDVLVFA------SKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (618)
Q Consensus 469 ~~~~vLVF~------~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~ 514 (618)
...+|+||. ++--.|..+.+.|...|+.+..+.=..+...+....+
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 467999999 4677899999999999988887765555555554443
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=38.38 E-value=15 Score=34.50 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.5
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.||+|||||+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999964
No 473
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=38.30 E-value=2e+02 Score=28.46 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.3
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
.++++|.+|+|||..
T Consensus 81 ~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 81 RVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 678899999999975
No 474
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=38.24 E-value=21 Score=36.68 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=18.5
Q ss_pred HHHHHhcCCcE--EEEeCCCCcHHHH
Q 007090 255 ALPIILSGRDI--IGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~dv--l~~~~TGsGKT~~ 278 (618)
.+..++.|.++ +..|.||||||.+
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeE
Confidence 56667788764 5678999999965
No 475
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=38.20 E-value=52 Score=30.59 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=45.5
Q ss_pred CCCcccHHHHHHhcCCCCCCCcEEEEcCChhHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHHhcCCceEEEec
Q 007090 451 PSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (618)
Q Consensus 451 ~~~~~k~~~l~~~l~~~~~~~~vLVF~~~~~~~~~l~~~L~~~~~~-~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT 527 (618)
+....|.......+... .+++||++++..-+..+.+.+.+.++. +..++|+.. ....|+|+|
T Consensus 116 ~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp SSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 44455655444443332 578999999999999999998887888 899998764 246788888
No 476
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=38.13 E-value=22 Score=36.03 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=16.7
Q ss_pred HHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 256 LPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 256 i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
+..++.|.+ ++..|.||||||.+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 444667765 45678999999965
No 477
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=38.10 E-value=17 Score=33.64 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=28.3
Q ss_pred cCceeEEEecchhhhhcCCChHHHHHHHHhcCCCccEEEEe
Q 007090 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (618)
Q Consensus 370 l~~~~~iIvDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 410 (618)
+....++++||.-.-++......+..++..+.....+++++
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiiv 189 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEE
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45678899999988888887777777777664323344443
No 478
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=37.97 E-value=22 Score=30.08 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~-~~~~l~g~~~ 505 (618)
...+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 356899999998889999999999999 5889999864
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=37.89 E-value=21 Score=37.02 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.4
Q ss_pred CcEEEEeCCCCcHHHHH
Q 007090 263 RDIIGIAKTGSGKTAAF 279 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~~ 279 (618)
+.+++++++|+|||+..
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999753
No 480
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=37.81 E-value=1.3e+02 Score=33.05 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHHhh--------------------------------cCceEEEEECCCChHHHHHHH
Q 007090 298 GPIGVICAPTRELAHQIYLETKKFAKS--------------------------------HGIRVSAVYGGMSKLDQFKEL 345 (618)
Q Consensus 298 ~~~vLIl~Ptr~La~q~~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l 345 (618)
+..+||.||++.-+..++..+...... ....+..++|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567999999999999888888764321 123478888888876554332
Q ss_pred ---H-cCCcEEEeChHHHHHHHHccccccCceeEEEec
Q 007090 346 ---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (618)
Q Consensus 346 ---~-~~~dIiv~Tp~~L~~~l~~~~~~l~~~~~iIvD 379 (618)
. +...|+|||. .+ ...+++..+.+||-+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HH-hcccCCCceEEEEeC
Confidence 2 3578999994 33 335567777776643
No 481
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=37.48 E-value=30 Score=31.80 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.7
Q ss_pred hcCCcEEEEeCCCCcHHHH
Q 007090 260 LSGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 260 ~~~~dvl~~~~TGsGKT~~ 278 (618)
+.|.-+++.|+.|+|||++
T Consensus 4 m~g~~i~~eG~~gsGKsT~ 22 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTN 22 (213)
T ss_dssp -CCEEEEEECSTTSSHHHH
T ss_pred CCceEEEEEcCCCCCHHHH
Confidence 4566788999999999986
No 482
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=37.32 E-value=15 Score=39.91 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=13.9
Q ss_pred cEEEEeCCCCcHHHH
Q 007090 264 DIIGIAKTGSGKTAA 278 (618)
Q Consensus 264 dvl~~~~TGsGKT~~ 278 (618)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 483
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=37.19 E-value=29 Score=26.23 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=28.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHhCCCc-EEEEeCCCC
Q 007090 470 DGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (618)
Q Consensus 470 ~~~vLVF~~~~~~~~~l~~~L~~~~~~-~~~l~g~~~ 505 (618)
..+++|+|.+-..+...+..|...|+. +..+ |++.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 568999999988899999999999985 5555 6643
No 484
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=37.14 E-value=20 Score=42.00 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCceEEEec-----cccccc-CCcCCccEE
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAARG-LDIKSIKSV 542 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~g~~~VLVaT-----~~~~~G-ldi~~v~~V 542 (618)
.++++||.+|++.-+...++.|....-.++.++|+.+ .++...|+|+| +.+.++ ..+..+.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3568999999999999999999887668999999886 34568899999 233333 335566776
Q ss_pred EE
Q 007090 543 VN 544 (618)
Q Consensus 543 I~ 544 (618)
|+
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 485
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=37.12 E-value=17 Score=33.82 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.2
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.||.|+|||+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999964
No 486
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=36.99 E-value=25 Score=35.44 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=17.5
Q ss_pred HHHHHhcCCc--EEEEeCCCCcHHHH
Q 007090 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (618)
Q Consensus 255 ~i~~i~~~~d--vl~~~~TGsGKT~~ 278 (618)
.+..++.|.+ ++..|.||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 3445667765 46688999999965
No 487
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=36.80 E-value=20 Score=32.42 Aligned_cols=16 Identities=25% Similarity=-0.045 Sum_probs=13.5
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.-+.+.|++|||||+.
T Consensus 23 ~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999975
No 488
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=36.68 E-value=17 Score=33.98 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.6
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.||.|+|||+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999964
No 489
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=36.42 E-value=65 Score=34.57 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHHhh----cCceEEEEECCCCh--HHHHHHHHcC-Cc---EEEeChHHHHHHHHcc
Q 007090 297 EGPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSK--LDQFKELKAG-CE---IVIATPGRLIDMLKMK 366 (618)
Q Consensus 297 ~~~~vLIl~Ptr~La~q~~~~~~~~~~~----~~~~~~~~~gg~~~--~~~~~~l~~~-~d---Iiv~Tp~~L~~~l~~~ 366 (618)
.+.++||.|+++.-|..+++.+.+.... .+-.+..+.|.... ......+..+ .+ |++||. ++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hh-hc
Confidence 3578999999999999999998876542 12235555565443 2223334432 33 777772 22 34
Q ss_pred ccccCceeEEEecchh
Q 007090 367 ALTMSRVTYLVLDEAD 382 (618)
Q Consensus 367 ~~~l~~~~~iIvDEah 382 (618)
.+++..+.+||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 5678889999986553
No 490
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=36.42 E-value=56 Score=31.87 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=40.3
Q ss_pred CcEEEEcCC-----------hhHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007090 471 GDVLVFASK-----------KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (618)
Q Consensus 471 ~~vLVF~~~-----------~~~~~~l~~~L~~~~~~~~~l~g~~~~~~r~~~~~~F~~ 518 (618)
+-.|||+|. ..+++.|.+.|+..|+.|. ++.+++..+-.+++..|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458999988 6789999999999999875 5568999999999999964
No 491
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=36.40 E-value=1.1e+02 Score=29.04 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH---HHHHH
Q 007090 270 KTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK 346 (618)
Q Consensus 270 ~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~ 346 (618)
...+||... +.-++..+.. .+.++||.+.++..+..+...+.+. .++.+..+.|+.+..+. +..+.
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhc
Confidence 356788864 4555555432 2667999999998887776666552 27788888888775443 23333
Q ss_pred cC--Cc-EEEeChHHHHHHHHccccccCceeEEEecch
Q 007090 347 AG--CE-IVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (618)
Q Consensus 347 ~~--~d-Iiv~Tp~~L~~~l~~~~~~l~~~~~iIvDEa 381 (618)
.+ +. ++++|- . ....+++...+.||+=+.
T Consensus 161 ~~~~~~v~L~st~-----~-~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 161 NNPSVKFIVLSVK-----A-GGFGINLTSANRVIHFDR 192 (271)
T ss_dssp HCTTCCEEEEECC-----T-TCCCCCCTTCSEEEECSC
T ss_pred CCCCCCEEEEehh-----h-hcCCcCcccCCEEEEECC
Confidence 33 44 555653 1 133556777777665433
No 492
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=36.17 E-value=17 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.||+|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999964
No 493
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=36.07 E-value=22 Score=33.14 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=18.6
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHHHh
Q 007090 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~~~l~~l~~~~ 288 (618)
.|.-+++.|+.|+|||++ +..|...+
T Consensus 25 ~g~~i~i~G~~GsGKsT~--~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV--INEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 456788999999999976 44444433
No 494
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=36.03 E-value=24 Score=32.17 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=21.7
Q ss_pred eeEEEecchhhhhcCC--Ch--HHHHHHHHhc-CCCccEEEEecc
Q 007090 373 VTYLVLDEADRMFDLG--FE--PQIRSIVGQI-RPDRQTLLFSAT 412 (618)
Q Consensus 373 ~~~iIvDEah~~~~~~--~~--~~i~~i~~~~-~~~~q~i~~SAT 412 (618)
-.+|||||||.++... .. ..+...+... ....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999985321 11 1122222222 234567777666
No 495
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=36.01 E-value=36 Score=33.48 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=15.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHH
Q 007090 264 DIIGIAKTGSGKTAAFVLPMI 284 (618)
Q Consensus 264 dvl~~~~TGsGKT~~~~l~~l 284 (618)
-++..+..|.|||++.+..+.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCchHHHHHHHHHH
Confidence 456788999999987554443
No 496
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=35.60 E-value=18 Score=34.50 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.5
Q ss_pred cCCcEEEEeCCCCcHHHH
Q 007090 261 SGRDIIGIAKTGSGKTAA 278 (618)
Q Consensus 261 ~~~dvl~~~~TGsGKT~~ 278 (618)
.|.-+.+.||.|+|||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999964
No 497
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=35.54 E-value=21 Score=32.68 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=13.6
Q ss_pred CcEEEEeCCCCcHHHH
Q 007090 263 RDIIGIAKTGSGKTAA 278 (618)
Q Consensus 263 ~dvl~~~~TGsGKT~~ 278 (618)
.-+.+.|++|||||++
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999975
No 498
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=35.52 E-value=14 Score=33.65 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=12.5
Q ss_pred EEEEeCCCCcHHHH
Q 007090 265 IIGIAKTGSGKTAA 278 (618)
Q Consensus 265 vl~~~~TGsGKT~~ 278 (618)
+++.|+.|||||++
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999975
No 499
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=35.47 E-value=29 Score=31.10 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCccccCCCCeEEEEcccHHHHHHHHHHHHHH
Q 007090 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (618)
Q Consensus 265 vl~~~~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vLIl~Ptr~La~q~~~~~~~~ 321 (618)
+++.|++|||||.-+.-.+ .. +..+++++.-...-..+.+.+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----------~~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----------GD-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----------CS-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----------hc-CCCeEEEecCCCCCHHHHHHHHHH
No 500
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=35.43 E-value=23 Score=29.80 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHhCCCc-EEEEeCCC
Q 007090 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDK 504 (618)
Q Consensus 469 ~~~~vLVF~~~~~~~~~l~~~L~~~~~~-~~~l~g~~ 504 (618)
...+++|||.+-..+..++..|...|+. +..+.|++
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Done!