Query 007091
Match_columns 618
No_of_seqs 317 out of 1762
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 18:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 3.8E-50 8.3E-55 431.3 21.3 246 70-328 139-390 (436)
2 KOG4347 GTPase-activating prot 100.0 4.9E-46 1.1E-50 405.8 20.8 378 78-482 193-594 (671)
3 KOG2223 Uncharacterized conser 100.0 1.2E-39 2.7E-44 340.3 17.8 281 78-369 292-578 (586)
4 smart00164 TBC Domain in Tre-2 100.0 1.8E-38 3.9E-43 311.4 17.1 190 84-285 1-198 (199)
5 KOG2222 Uncharacterized conser 100.0 6.9E-38 1.5E-42 329.2 16.9 275 72-359 154-439 (848)
6 COG5210 GTPase-activating prot 100.0 4E-36 8.7E-41 334.9 19.2 238 73-320 198-442 (496)
7 KOG4567 GTPase-activating prot 100.0 9.5E-36 2.1E-40 301.9 15.4 258 75-335 23-357 (370)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 1.1E-33 2.4E-38 278.7 17.7 212 90-305 1-214 (214)
9 KOG1092 Ypt/Rab-specific GTPas 100.0 7.2E-34 1.6E-38 297.6 14.8 258 71-336 172-471 (484)
10 KOG1093 Predicted protein kina 100.0 5.7E-29 1.2E-33 268.2 16.3 248 71-338 339-590 (725)
11 KOG4436 Predicted GTPase activ 100.0 1.2E-27 2.5E-32 265.5 25.6 235 72-323 562-809 (948)
12 KOG2224 Uncharacterized conser 100.0 1.2E-29 2.7E-34 264.8 7.3 279 30-321 386-713 (781)
13 KOG1102 Rab6 GTPase activator 99.9 2.1E-26 4.6E-31 249.6 13.5 242 74-333 132-380 (397)
14 KOG2595 Predicted GTPase activ 99.9 1.2E-23 2.5E-28 216.2 16.4 253 75-347 46-309 (395)
15 KOG2221 PDZ-domain interacting 99.9 2.7E-24 5.9E-29 209.3 7.4 168 79-260 95-267 (267)
16 KOG1091 Ypt/Rab-specific GTPas 99.9 3E-23 6.6E-28 224.3 13.7 203 132-336 98-360 (625)
17 KOG2197 Ypt/Rab-specific GTPas 99.8 6.5E-21 1.4E-25 210.9 11.9 234 82-318 172-422 (488)
18 KOG4436 Predicted GTPase activ 99.8 2E-18 4.4E-23 192.5 13.2 247 77-335 174-437 (948)
19 KOG3636 Uncharacterized conser 99.6 1.8E-14 3.8E-19 152.7 13.6 239 87-356 36-285 (669)
20 KOG2801 Probable Rab-GAPs [Int 99.5 2E-12 4.3E-17 131.4 17.1 266 72-353 27-307 (559)
21 PF14961 BROMI: Broad-minded p 97.7 0.00021 4.6E-09 85.3 12.2 187 163-363 1085-1290(1296)
22 KOG1648 Uncharacterized conser 97.6 5.3E-06 1.1E-10 90.0 -2.8 211 80-320 551-785 (813)
23 KOG0982 Centrosomal protein Nu 88.3 4.8 0.00011 44.3 11.4 80 444-523 255-372 (502)
24 KOG1265 Phospholipase C [Lipid 83.1 1.2E+02 0.0026 36.9 22.0 143 423-570 1020-1176(1189)
25 PF09726 Macoilin: Transmembra 81.6 20 0.00042 42.7 13.4 71 476-556 538-611 (697)
26 PF04728 LPP: Lipoprotein leuc 78.7 7.2 0.00016 31.2 5.9 42 479-539 13-54 (56)
27 PF07111 HCR: Alpha helical co 78.7 87 0.0019 37.0 16.7 66 456-521 487-552 (739)
28 PF09726 Macoilin: Transmembra 76.7 98 0.0021 37.0 17.1 61 509-569 550-610 (697)
29 PRK03947 prefoldin subunit alp 76.7 47 0.001 31.0 12.0 48 473-520 91-138 (140)
30 KOG0612 Rho-associated, coiled 69.7 89 0.0019 39.1 14.5 113 434-556 632-745 (1317)
31 PF15003 HAUS2: HAUS augmin-li 68.9 99 0.0021 32.6 13.0 119 434-579 56-197 (277)
32 TIGR02168 SMC_prok_B chromosom 68.4 2.6E+02 0.0056 34.6 19.1 10 93-102 157-166 (1179)
33 PF05701 WEMBL: Weak chloropla 68.0 2.3E+02 0.005 32.6 17.8 126 443-573 292-427 (522)
34 PF05278 PEARLI-4: Arabidopsis 67.6 64 0.0014 33.9 11.3 73 441-519 168-243 (269)
35 KOG2197 Ypt/Rab-specific GTPas 67.6 3.8 8.2E-05 46.6 2.7 34 76-109 66-99 (488)
36 PF15070 GOLGA2L5: Putative go 67.0 1.2E+02 0.0026 35.7 14.7 96 436-533 26-138 (617)
37 COG4238 Murein lipoprotein [Ce 66.8 18 0.00038 30.6 5.7 44 478-540 34-77 (78)
38 PF07888 CALCOCO1: Calcium bin 66.8 2.5E+02 0.0054 32.6 19.0 119 441-565 334-457 (546)
39 KOG4010 Coiled-coil protein TP 66.8 8.6 0.00019 37.9 4.5 37 472-508 40-76 (208)
40 COG3132 Uncharacterized protei 65.3 6.6 0.00014 38.5 3.4 28 470-501 183-210 (215)
41 COG4942 Membrane-bound metallo 65.1 1.5E+02 0.0032 33.3 14.1 93 418-517 147-244 (420)
42 KOG1916 Nuclear protein, conta 63.2 59 0.0013 39.5 11.0 127 387-519 831-980 (1283)
43 PF00261 Tropomyosin: Tropomyo 62.4 1.7E+02 0.0038 29.8 13.5 43 529-571 96-138 (237)
44 PF14931 IFT20: Intraflagellar 61.9 1.3E+02 0.0029 27.7 11.8 84 435-522 16-115 (120)
45 PRK11637 AmiB activator; Provi 61.5 1.3E+02 0.0028 33.5 13.3 46 480-525 44-89 (428)
46 KOG0994 Extracellular matrix g 59.3 4.7E+02 0.01 33.2 19.0 33 324-356 1488-1523(1758)
47 PF00769 ERM: Ezrin/radixin/mo 58.1 2.3E+02 0.005 29.3 15.7 76 435-512 8-83 (246)
48 PRK10884 SH3 domain-containing 57.7 77 0.0017 32.0 9.6 25 428-452 89-113 (206)
49 PF09787 Golgin_A5: Golgin sub 57.1 3.4E+02 0.0073 31.2 15.9 120 417-540 86-210 (511)
50 KOG2224 Uncharacterized conser 56.6 4.6 9.9E-05 44.4 0.7 34 178-211 566-600 (781)
51 PF13851 GAS: Growth-arrest sp 56.2 2.2E+02 0.0048 28.5 17.9 62 449-512 29-90 (201)
52 PF04849 HAP1_N: HAP1 N-termin 55.9 86 0.0019 33.6 10.0 72 434-507 229-300 (306)
53 KOG2072 Translation initiation 55.5 4.6E+02 0.01 31.9 16.5 109 446-566 720-848 (988)
54 PRK10884 SH3 domain-containing 55.1 1.7E+02 0.0037 29.6 11.6 29 544-572 137-165 (206)
55 PRK09039 hypothetical protein; 54.9 3.1E+02 0.0068 29.8 16.7 76 479-554 112-187 (343)
56 PF12325 TMF_TATA_bd: TATA ele 53.8 1.7E+02 0.0037 27.1 10.4 73 434-513 18-91 (120)
57 TIGR01005 eps_transp_fam exopo 53.6 4.6E+02 0.01 31.3 18.1 29 477-505 289-317 (754)
58 TIGR00570 cdk7 CDK-activating 53.4 3.1E+02 0.0068 29.5 13.7 55 468-522 120-174 (309)
59 PF12325 TMF_TATA_bd: TATA ele 52.8 1.9E+02 0.0042 26.7 11.0 41 479-519 19-59 (120)
60 TIGR03185 DNA_S_dndD DNA sulfu 52.3 3.9E+02 0.0085 31.5 15.9 73 445-517 390-462 (650)
61 PF06698 DUF1192: Protein of u 51.9 32 0.0007 27.9 4.7 30 479-508 24-53 (59)
62 KOG3632 Peripheral benzodiazep 51.0 9.4 0.0002 46.1 2.1 124 426-551 155-295 (1335)
63 TIGR03752 conj_TIGR03752 integ 50.8 1.1E+02 0.0024 34.6 10.3 43 425-467 51-94 (472)
64 COG1196 Smc Chromosome segrega 50.1 6.5E+02 0.014 32.0 19.2 34 527-560 872-905 (1163)
65 COG1196 Smc Chromosome segrega 50.0 6.5E+02 0.014 32.0 20.0 92 436-527 671-774 (1163)
66 TIGR02680 conserved hypothetic 49.1 7.2E+02 0.016 32.3 20.5 30 545-574 360-389 (1353)
67 TIGR02169 SMC_prok_A chromosom 48.9 6.2E+02 0.013 31.4 19.9 20 481-500 299-318 (1164)
68 PRK10929 putative mechanosensi 48.8 4.8E+02 0.01 33.1 16.2 70 438-509 172-241 (1109)
69 PF00038 Filament: Intermediat 48.7 2.6E+02 0.0056 29.4 12.5 58 462-519 239-298 (312)
70 PF11932 DUF3450: Protein of u 48.7 2.1E+02 0.0046 29.4 11.5 44 477-520 71-114 (251)
71 COG1842 PspA Phage shock prote 48.1 3.2E+02 0.007 28.0 16.7 94 476-574 85-187 (225)
72 PRK11637 AmiB activator; Provi 47.9 2.2E+02 0.0048 31.6 12.4 22 436-457 44-65 (428)
73 PF12777 MT: Microtubule-bindi 46.9 2.2E+02 0.0049 30.7 11.9 33 481-513 13-45 (344)
74 PF08317 Spc7: Spc7 kinetochor 46.8 3.8E+02 0.0083 28.7 13.5 98 434-534 179-278 (325)
75 PF07106 TBPIP: Tat binding pr 46.1 1.2E+02 0.0027 29.1 8.8 52 450-501 83-134 (169)
76 PF03148 Tektin: Tektin family 44.7 2.5E+02 0.0054 31.0 11.9 82 444-525 263-366 (384)
77 KOG1102 Rab6 GTPase activator 43.7 4.8 0.0001 44.5 -1.6 108 168-300 24-131 (397)
78 PF09731 Mitofilin: Mitochondr 43.5 5.7E+02 0.012 29.5 18.6 16 486-501 314-329 (582)
79 PF03980 Nnf1: Nnf1 ; InterPr 41.8 1.9E+02 0.004 25.8 8.7 59 446-504 37-108 (109)
80 PRK11239 hypothetical protein; 39.3 41 0.0009 34.1 4.3 26 479-504 186-211 (215)
81 PF07111 HCR: Alpha helical co 39.2 6.7E+02 0.015 30.0 14.4 30 476-513 331-360 (739)
82 TIGR02894 DNA_bind_RsfA transc 38.6 95 0.0021 30.2 6.4 38 478-515 113-150 (161)
83 PF09744 Jnk-SapK_ap_N: JNK_SA 38.4 3.8E+02 0.0082 26.0 13.2 61 445-505 56-118 (158)
84 PF05701 WEMBL: Weak chloropla 38.4 6.7E+02 0.015 28.8 15.3 131 434-564 43-190 (522)
85 cd07667 BAR_SNX30 The Bin/Amph 38.3 2.9E+02 0.0064 28.6 10.4 71 416-492 120-190 (240)
86 PF11068 YlqD: YlqD protein; 37.3 3.5E+02 0.0077 25.4 9.9 26 471-496 15-40 (131)
87 KOG2264 Exostosin EXT1L [Signa 36.4 1.5E+02 0.0033 34.3 8.5 45 447-503 83-127 (907)
88 PHA02562 46 endonuclease subun 35.4 7.1E+02 0.015 28.3 16.7 53 476-528 358-410 (562)
89 KOG3990 Uncharacterized conser 35.1 1.6E+02 0.0035 30.7 7.8 68 484-560 226-295 (305)
90 PTZ00121 MAEBL; Provisional 35.1 1.2E+03 0.026 30.7 17.6 21 522-542 1262-1282(2084)
91 PF04201 TPD52: Tumour protein 34.9 49 0.0011 32.1 3.9 33 476-508 29-61 (162)
92 cd00632 Prefoldin_beta Prefold 34.6 3.3E+02 0.007 24.1 10.2 75 434-508 8-95 (105)
93 PRK02224 chromosome segregatio 34.1 9.3E+02 0.02 29.2 17.1 135 437-573 270-404 (880)
94 PF10186 Atg14: UV radiation r 33.5 5.5E+02 0.012 26.4 19.2 13 461-473 35-47 (302)
95 TIGR01843 type_I_hlyD type I s 33.3 6.5E+02 0.014 27.2 16.2 23 549-571 249-271 (423)
96 COG3750 Uncharacterized protei 33.3 2.5E+02 0.0053 24.2 7.3 31 471-501 9-39 (85)
97 PF14077 WD40_alt: Alternative 32.6 32 0.0007 26.4 1.8 23 479-501 14-36 (48)
98 PF09731 Mitofilin: Mitochondr 32.6 8.3E+02 0.018 28.2 18.7 10 418-427 227-236 (582)
99 PF00036 EF-hand_1: EF hand; 32.1 17 0.00037 24.9 0.2 26 447-472 4-29 (29)
100 KOG0996 Structural maintenance 31.9 1E+03 0.022 30.3 14.8 124 434-558 860-989 (1293)
101 TIGR02680 conserved hypothetic 31.6 7.5E+02 0.016 32.1 14.7 32 71-102 139-175 (1353)
102 TIGR01837 PHA_granule_1 poly(h 31.2 2.2E+02 0.0047 26.1 7.4 26 472-497 92-117 (118)
103 PF15619 Lebercilin: Ciliary p 30.2 5.7E+02 0.012 25.6 12.0 85 478-562 4-91 (194)
104 PF14389 Lzipper-MIP1: Leucine 30.1 2.2E+02 0.0049 24.7 6.9 62 441-502 10-80 (88)
105 KOG4673 Transcription factor T 29.3 5E+02 0.011 31.0 11.2 87 430-524 695-781 (961)
106 PF05911 DUF869: Plant protein 28.8 8.4E+02 0.018 29.7 13.5 34 515-548 131-164 (769)
107 PRK04863 mukB cell division pr 28.8 1.5E+03 0.032 29.9 19.2 94 477-571 377-474 (1486)
108 PRK04778 septation ring format 28.4 9.8E+02 0.021 27.8 15.7 37 533-569 370-406 (569)
109 KOG0971 Microtubule-associated 28.3 7.6E+02 0.016 30.6 12.6 99 452-555 436-537 (1243)
110 COG3096 MukB Uncharacterized p 28.3 1E+03 0.022 29.0 13.4 104 463-566 358-469 (1480)
111 PRK06975 bifunctional uroporph 28.2 3.7E+02 0.0081 31.9 10.6 71 436-515 343-413 (656)
112 PF04156 IncA: IncA protein; 27.4 5.7E+02 0.012 24.7 14.4 69 432-502 81-149 (191)
113 PF15450 DUF4631: Domain of un 27.0 6E+02 0.013 29.3 11.2 74 478-555 169-245 (531)
114 PRK15396 murein lipoprotein; P 27.0 1.9E+02 0.0042 24.8 5.8 16 524-539 61-76 (78)
115 TIGR01010 BexC_CtrB_KpsE polys 26.7 8.3E+02 0.018 26.3 15.3 22 552-573 277-298 (362)
116 PF06248 Zw10: Centromere/kine 26.4 6.3E+02 0.014 29.4 11.9 70 434-503 16-96 (593)
117 PF05266 DUF724: Protein of un 26.3 6.6E+02 0.014 25.0 12.3 23 476-498 124-146 (190)
118 PRK11281 hypothetical protein; 26.2 1.5E+03 0.032 29.0 16.6 71 437-509 190-260 (1113)
119 smart00150 SPEC Spectrin repea 26.1 3.7E+02 0.008 22.0 8.1 52 453-505 48-99 (101)
120 KOG0161 Myosin class II heavy 26.1 1.8E+03 0.039 30.0 18.9 28 541-568 1078-1105(1930)
121 KOG4571 Activating transcripti 26.1 1.6E+02 0.0035 31.3 6.2 40 462-503 250-289 (294)
122 PF12709 Kinetocho_Slk19: Cent 26.0 2.1E+02 0.0045 25.1 5.9 40 474-513 47-86 (87)
123 KOG0161 Myosin class II heavy 25.0 1.9E+03 0.04 29.9 18.5 22 479-500 1009-1030(1930)
124 PF14817 HAUS5: HAUS augmin-li 24.8 3E+02 0.0065 32.6 8.8 41 478-518 81-125 (632)
125 PHA02562 46 endonuclease subun 24.8 1.1E+03 0.023 26.9 17.9 28 540-567 380-407 (562)
126 PF00601 Flu_NS2: Influenza no 24.4 2E+02 0.0044 25.3 5.4 46 477-522 38-88 (94)
127 KOG4552 Vitamin-D-receptor int 24.2 7.7E+02 0.017 25.1 11.2 22 551-572 114-135 (272)
128 PF07227 DUF1423: Protein of u 24.2 4.5E+02 0.0098 29.7 9.5 51 491-551 351-410 (446)
129 PF12761 End3: Actin cytoskele 24.1 91 0.002 31.3 3.8 32 473-504 157-188 (195)
130 PF13971 Mei4: Meiosis-specifi 23.9 1.8E+02 0.004 32.1 6.4 57 442-499 15-75 (375)
131 PF05597 Phasin: Poly(hydroxya 23.8 1.4E+02 0.003 28.1 4.8 45 446-497 86-130 (132)
132 PLN03086 PRLI-interacting fact 23.7 4.1E+02 0.009 31.0 9.5 45 480-537 4-48 (567)
133 PF05529 Bap31: B-cell recepto 23.4 6.5E+02 0.014 24.6 9.9 21 481-501 152-172 (192)
134 KOG4360 Uncharacterized coiled 23.4 1.2E+03 0.026 27.0 15.3 117 431-560 165-296 (596)
135 PF04111 APG6: Autophagy prote 23.3 9.4E+02 0.02 25.8 13.0 26 479-504 46-71 (314)
136 PF13514 AAA_27: AAA domain 23.2 1.2E+03 0.027 29.3 14.4 8 92-99 510-517 (1111)
137 smart00338 BRLZ basic region l 22.5 3.1E+02 0.0067 22.0 6.1 19 480-498 44-62 (65)
138 PF06098 Radial_spoke_3: Radia 22.5 9.6E+02 0.021 25.6 14.6 29 461-489 138-166 (291)
139 KOG3973 Uncharacterized conser 22.0 2.9E+02 0.0063 30.2 7.2 63 434-496 37-117 (465)
140 PF02181 FH2: Formin Homology 21.8 2.4E+02 0.0053 30.4 7.0 37 540-576 310-346 (370)
141 PRK11578 macrolide transporter 21.5 9.2E+02 0.02 25.9 11.4 8 426-433 77-84 (370)
142 PF10168 Nup88: Nuclear pore c 21.4 5.1E+02 0.011 31.2 10.0 63 472-562 553-616 (717)
143 KOG2391 Vacuolar sorting prote 21.4 3.9E+02 0.0085 29.1 8.0 16 481-496 251-266 (365)
144 TIGR01843 type_I_hlyD type I s 21.2 1E+03 0.023 25.5 19.7 16 555-570 248-263 (423)
145 PF06098 Radial_spoke_3: Radia 21.2 4.5E+02 0.0097 28.1 8.5 40 504-547 189-228 (291)
146 KOG3048 Molecular chaperone Pr 21.2 2.7E+02 0.0059 26.7 6.1 42 476-556 13-54 (153)
147 cd03401 Band_7_prohibitin Band 20.8 5E+02 0.011 25.0 8.4 10 477-486 117-126 (196)
148 PRK03918 chromosome segregatio 20.7 1.5E+03 0.033 27.3 16.5 123 434-557 614-739 (880)
149 PRK13729 conjugal transfer pil 20.5 2E+02 0.0042 32.8 5.9 39 460-499 76-120 (475)
150 KOG0980 Actin-binding protein 20.2 1.7E+03 0.037 27.6 26.8 23 334-356 209-231 (980)
151 smart00338 BRLZ basic region l 20.1 3.1E+02 0.0067 22.0 5.6 36 474-509 24-59 (65)
152 KOG0250 DNA repair protein RAD 20.1 1.8E+03 0.039 27.9 16.7 124 434-569 257-388 (1074)
153 PF10815 ComZ: ComZ; InterPro 20.0 55 0.0012 26.0 1.1 40 230-269 6-45 (56)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-50 Score=431.27 Aligned_cols=246 Identities=47% Similarity=0.889 Sum_probs=226.6
Q ss_pred CCCCCCCHHHHHHHhhcCCChhhHHHHHHHHhcCccccC-HHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCC
Q 007091 70 PEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRT-ESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPR 148 (618)
Q Consensus 70 ~~~~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~-~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~R 148 (618)
+...++|.++||.++|+|||+++|+.||..++|...... +++|+.+++...... ..+.++|+.|+.|
T Consensus 139 ~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~~~~~~~~yq~ll~~~~~~~------------~~~~~qI~~DL~R 206 (436)
T KOG2058|consen 139 PNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARRQLNYPGYYQELLRKGDEKK------------SPVVKQIKLDLPR 206 (436)
T ss_pred cccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchhhccCchhHHHHHhcCCCcc------------chHHHHHHhcccc
Confidence 456678999999999999999999999999999444333 889999987644221 1368999999999
Q ss_pred CCCCC-CCCCh---hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCC-hhHHHHHHHHhHHhhccccCChhhHHH
Q 007091 149 TFPAH-PALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP-EENAFWTFVGIIDDYFDGYYTEEMIEA 223 (618)
Q Consensus 149 Tfp~~-~~f~~---~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~-EedAFw~l~~Lm~~~l~~yf~~~~~~l 223 (618)
|||++ +.|.. .++..|+|||.||+++||+||||||||++||++|++|+ |++|||||+.++++|+|.||+.++.|.
T Consensus 207 TfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~ 286 (436)
T KOG2058|consen 207 TFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGS 286 (436)
T ss_pred ccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhh
Confidence 99999 78853 35799999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Q 007091 224 QVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPA 303 (618)
Q Consensus 224 ~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~ 303 (618)
++++.+|+.||+..+|+|+.||...+++..++++.||+|+|++.+|.++++||||++|++|.++ +|++|+|+++..++.
T Consensus 287 qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskv-lfr~Alai~k~~ee~ 365 (436)
T KOG2058|consen 287 QVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKV-LFRVALAILKKHEEE 365 (436)
T ss_pred hccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred hhcCCCHHHHHHHHHhccCCCCCHH
Q 007091 304 LVTTKDAGDAITLLQSLAGSTFDSS 328 (618)
Q Consensus 304 LL~~~d~~ei~~lLq~l~~~~~D~~ 328 (618)
|+.+.+..+++.+++.+....++.+
T Consensus 366 il~~~~~~~i~~~~~~~~~~~~~~~ 390 (436)
T KOG2058|consen 366 ILKEDSSKEILRVLPDLTKRSIDPD 390 (436)
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998888777776
No 2
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=4.9e-46 Score=405.75 Aligned_cols=378 Identities=33% Similarity=0.534 Sum_probs=331.6
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHhcCccc--cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCC
Q 007091 78 EELESLVHGGVPKDLRGELWQAFVGVKAR--RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPA 155 (618)
Q Consensus 78 ekLk~lir~GIP~~lR~~VW~~LLGv~~~--~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~~~ 155 (618)
.+++++++.|||...|+++|..++|+-.. .++++|..++...... ..-..+.|++|++|..|+||.
T Consensus 193 ~~~~Klv~~gipe~~rgeiW~l~sGav~~~l~~~Geygkll~~~~G~------------~~~a~eEIE~Dl~rsLpEhpA 260 (671)
T KOG4347|consen 193 ILLRKLLYNGFPEDPRGEIWYLASGAVASLLLNPGEYGKLLHSVTGK------------RSVATEEIEPDLGRSLPEHPA 260 (671)
T ss_pred HHHHHHHHHhcCCChHHHHHHhhhHHHHHhhcCcHHhhhhhhcccCC------------cccccccccCCCCCCCCcchh
Confidence 46888999999999999999999998654 4789999998765431 122468999999999999999
Q ss_pred CC-hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHH
Q 007091 156 LN-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELI 234 (618)
Q Consensus 156 f~-~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LL 234 (618)
|+ +.|..+|+|||.||++.||+|||||.||.+++.+|+++.|++|||+++.+++.++|+||+....|...++.+|+.|+
T Consensus 261 ~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lv 340 (671)
T KOG4347|consen 261 FQSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELV 340 (671)
T ss_pred hhCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 96 67999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCCCHHHHH
Q 007091 235 RERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAI 314 (618)
Q Consensus 235 k~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL~~~d~~ei~ 314 (618)
+.+.|.|+.|+..+| ...+...+||+|+|...+|++..+||.||||.+|+++ +|.+||||++.+.+.|+++.|.++++
T Consensus 341 e~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rv-lFqiaLail~~N~~~il~~~dDge~~ 418 (671)
T KOG4347|consen 341 EDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRV-LFQIALAILKQNAERILSATDDGEAM 418 (671)
T ss_pred HHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHH-HHHHHHHHHHhhHHHhcccCCchHHH
Confidence 999999999999999 6899999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHhccCCC---------------CCHHHHHHHHHHhhccCCHHHHHHHHHHhhHHHHHHHHHHhhcC--CcccC----
Q 007091 315 TLLQSLAGST---------------FDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGG--RVWKD---- 373 (618)
Q Consensus 315 ~lLq~l~~~~---------------~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~~~r~~~~--~~~~~---- 373 (618)
..++++..+. +...+|+.+|+..+..++...|+++|.||+..|++.++...++. |....
T Consensus 419 ~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg~it~e~ie~~R~K~r~~v~q~le~~~krt~lrs~~~~~~l 498 (671)
T KOG4347|consen 419 MVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFGDITDELIEHLRKKHRLGVLQSLEDFTKRTILRSVVQTTSL 498 (671)
T ss_pred HHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccCcc
Confidence 8887654322 22457999999999999999999999999999999999888774 33222
Q ss_pred CchhhhhhhcccCCchhhhhhccCCCCCCCCCCCCCCccCCCccCHHHHhccCCCCccccccchHHHHHHHHHHHHHHHH
Q 007091 374 PNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLE 453 (618)
Q Consensus 374 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ll~ 453 (618)
...-.+.||+..+..+.. ......+++|+. ++.++| ++...|-++|+.+.+|. +..-+..++|+|++
T Consensus 499 t~~dL~~lYd~f~~e~~~--~~~~~~~~~p~~-~~~eqy-i~~~~f~~~f~~l~pw~---------~s~~~~~rlF~l~D 565 (671)
T KOG4347|consen 499 TNTDLENLYDLFKEEHLT--NSIGLGRSDPDF-EAFEQY-IDYAQFLEVFRELLPWA---------VSLIFLERLFRLLD 565 (671)
T ss_pred CHHHHHHHHHHHHHHHhc--cCcccCCCCCCc-hHHHHH-HHHhhHHHHhhccCchh---------HHHHHHHHHHHhcc
Confidence 233466788866655333 222333667766 677899 99999999999999998 44557889999999
Q ss_pred HhHHHhHhHHHHHHHHHHHHHHhHHHHHH
Q 007091 454 DKRSAVLRAEELETALMEMVKQDNRRQLS 482 (618)
Q Consensus 454 e~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 482 (618)
.+-.++|.+.+|.++|.++|.+|+.+.++
T Consensus 566 ~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~ 594 (671)
T KOG4347|consen 566 DSMTGLLTFKDLVSGLSILKAGDALEKLK 594 (671)
T ss_pred cCCcceeEHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999998875
No 3
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=340.33 Aligned_cols=281 Identities=28% Similarity=0.473 Sum_probs=242.4
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhccc--cccc-CCCCCCchhhHHHHHhcCCCCCCCCC
Q 007091 78 EELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADE--SKEH-DNSFGVPRKWKKQIEKDIPRTFPAHP 154 (618)
Q Consensus 78 ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~--~~~~-~~~~~~~e~~~~qIekDv~RTfp~~~ 154 (618)
.+.+.++|.|||+.+||+||....|...+...+.|..++.+...... .... .++.+..+....+|+.|+.||||+..
T Consensus 292 rR~relWwQGiP~~VRGkvW~laIGNel~it~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i~LDisrTfpsl~ 371 (586)
T KOG2223|consen 292 RRVRELWWQGIPPSVRGKVWSLAIGNELNITYELFDIALARAKEREAKSLAEQMSNSAADREASVELIKLDISRTFPSLS 371 (586)
T ss_pred HHHHHHHHccCChhhcchhhHhhhCcccccCHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhheeechhccCccee
Confidence 35788999999999999999999999999999999998877653311 0111 12334456667899999999999999
Q ss_pred CCChhh--HHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhc-cccCChhhHHHHHHHHHHH
Q 007091 155 ALNEDG--RDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYF-DGYYTEEMIEAQVDQLVFE 231 (618)
Q Consensus 155 ~f~~~g--~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l-~~yf~~~~~~l~~~~~vf~ 231 (618)
+|+.+| .+.|..||.||+.|.|++||+|||.||+|+||+.|++.+||.||.+|+++.+ ..||....+.+......|+
T Consensus 372 iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~tfe 451 (586)
T KOG2223|consen 372 IFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPCQQAFFRVDHSSMLSYFATFE 451 (586)
T ss_pred eeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHHHHHHHhcCcHHHHHHHHHHH
Confidence 998665 7999999999999999999999999999999999999999999999999964 6788888888888889999
Q ss_pred HHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCCCHH
Q 007091 232 ELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAG 311 (618)
Q Consensus 232 ~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL~~~d~~ 311 (618)
..+++..|+|+.||.++++.|.+|++.|+.++|+..+|++.++||||+|+.+|..| ||+.+++||+++++.|+.+ |+.
T Consensus 452 ~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeF-lfr~~lgIlklyepkLl~m-Df~ 529 (586)
T KOG2223|consen 452 VFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEF-LFRTALGILKLYEPKLLVM-DFI 529 (586)
T ss_pred HHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHH-HHHHHHHHHHHccchHhhh-hHH
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999985 899
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhHHHHHHHHHHhhcCC
Q 007091 312 DAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGR 369 (618)
Q Consensus 312 ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~~~r~~~~~ 369 (618)
.+.++|..++......+.+...|+..+ .-|+|.+.+|++.+.++.+.+.
T Consensus 530 ~~~qfLtklp~dL~~eelF~~i~~~~~---------~sr~kkwsqvf~~i~kd~~eg~ 578 (586)
T KOG2223|consen 530 HVAQFLTKLPEDLTPEELFMHIAYIQM---------QSRSKKWSQVFQEIDKDVNEGG 578 (586)
T ss_pred HHHHHHHhCcccCCHHHHHHHHHHHhh---------hhhchhHHHHHHHHHhhccccC
Confidence 999999988764443334444444321 1478889999999999888765
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1.8e-38 Score=311.40 Aligned_cols=190 Identities=44% Similarity=0.807 Sum_probs=173.3
Q ss_pred hhcCCChhhHHHHHHHHhcCcccc---CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCCCh--
Q 007091 84 VHGGVPKDLRGELWQAFVGVKARR---TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNE-- 158 (618)
Q Consensus 84 ir~GIP~~lR~~VW~~LLGv~~~~---~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~~~f~~-- 158 (618)
+++|||+.+|+.+|+.++|+.... .+..|+++++...... .....+|++||.||+|++++|..
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~------------~~~~~~I~~Dv~Rt~~~~~~f~~~~ 68 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKD------------KSIVHQIEKDLRRTFPEHSFFQDKE 68 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCC------------hhhHHHHhcccCCCCCCchhhcCCC
Confidence 478999999999999999998764 4788999987643211 12468999999999999999963
Q ss_pred -hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcC-ChhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHHHH
Q 007091 159 -DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-PEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRE 236 (618)
Q Consensus 159 -~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LLk~ 236 (618)
.+++.|+|||.+|+.+||++|||||||+||++|++++ +|++|||||+++|+++.+.+|.+++.++...+.+|+.+|+.
T Consensus 69 ~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 148 (199)
T smart00164 69 GPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKE 148 (199)
T ss_pred cccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999 49999999999999988888999999999999999999999
Q ss_pred hChhhhhhccc-cccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCC
Q 007091 237 RFPKLVHHLDY-LGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGN 285 (618)
Q Consensus 237 ~~P~L~~HL~~-lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~ 285 (618)
++|+||+||.+ .|+++.+|+.+||+|+|++++|++.++||||+||++|.
T Consensus 149 ~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 149 YDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999996 99999999999999999999999999999999999996
No 5
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.9e-38 Score=329.24 Aligned_cols=275 Identities=29% Similarity=0.571 Sum_probs=249.4
Q ss_pred CCCCCHHHHHHHhh-cCCChhhHHHHHHHHhcCcccc--CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCC
Q 007091 72 PYFPWKEELESLVH-GGVPKDLRGELWQAFVGVKARR--TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPR 148 (618)
Q Consensus 72 ~~~~~~ekLk~lir-~GIP~~lR~~VW~~LLGv~~~~--~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~R 148 (618)
+..+..++++.+++ +|||+.+|+.+|+.|+|+...+ .+..|+++++...+.+. .+-.||++|+-|
T Consensus 154 ~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~ae~sy~~ilk~~andk~------------~~~~qiekdllr 221 (848)
T KOG2222|consen 154 GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDAETSYEDILKACANDKL------------MIGKQIEKDLLR 221 (848)
T ss_pred ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccccccHHHHHHHhccccc------------chhHHHHHHHHH
Confidence 34566789999997 5699999999999999997644 56779999987654332 246899999999
Q ss_pred CCCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhc-cccCChhhHHHH
Q 007091 149 TFPAHPALN---EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYF-DGYYTEEMIEAQ 224 (618)
Q Consensus 149 Tfp~~~~f~---~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l-~~yf~~~~~~l~ 224 (618)
+.|++.+|. ..|..+|+|||++.++..|++||||||..|+|.||+++.|+.|||++..+++..+ ++||+.+..|++
T Consensus 222 ~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp~nfysqtllgiq 301 (848)
T KOG2222|consen 222 ILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILPANFYSQTLLGIQ 301 (848)
T ss_pred hCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcCchhhhhhHhccc
Confidence 999999994 5689999999999999999999999999999999999999999999999999986 689999999999
Q ss_pred HHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHh
Q 007091 225 VDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPAL 304 (618)
Q Consensus 225 ~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~L 304 (618)
.+..+...|+..+.|+|-..|..++++.++.+..||+|||++++.....+||||.||++|.-. +|++.++||++.+..|
T Consensus 302 aderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~-ifql~i~ilkmkeqdi 380 (848)
T KOG2222|consen 302 ADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGIN-IFQLIIGILKMKEQDI 380 (848)
T ss_pred hhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcch-hHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876 9999999999999988
Q ss_pred hcC----CCHHHHHHHHHhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhHHHHH
Q 007091 305 VTT----KDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLL 359 (618)
Q Consensus 305 L~~----~d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~ 359 (618)
... .+..+++..|..+|....|++.++..|-..-..++...|.++|.+|.+.+++
T Consensus 381 ~~iaettensa~if~als~ip~~vtdve~l~~~~~~~~~sis~~li~~~rkkh~a~lma 439 (848)
T KOG2222|consen 381 KEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEFEFSISDHLIAEHRKKHLAVLMA 439 (848)
T ss_pred HHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhcccchhHHHHHHHHHHhHHhhhh
Confidence 855 6889999999999999999999999998766789999999999999876543
No 6
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=4e-36 Score=334.88 Aligned_cols=238 Identities=36% Similarity=0.626 Sum_probs=210.1
Q ss_pred CCCCHHHHHHHhhcCCChhhHHHHHHHHhcCcccc--CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 007091 73 YFPWKEELESLVHGGVPKDLRGELWQAFVGVKARR--TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (618)
Q Consensus 73 ~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~--~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTf 150 (618)
.+....+++.+++.|||+.+|+.+|..++|+.... .++.|..+.......... ......+|++|+.|||
T Consensus 198 ~~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~---------~~~~~~~i~~Dl~rt~ 268 (496)
T COG5210 198 LPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAKIP---------TQEIISQIEKDLSRTF 268 (496)
T ss_pred hhhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCchHHHHHHHHHHhcCCC---------cHHHHHHHHccccccc
Confidence 34556789999999999999999999999997643 577788777654322110 0135899999999999
Q ss_pred CCCCCCC-hhhHHH--HHHHHHHHHhhCCCCCccccchhHHHHHhhcCC-hhHHHHHHHHhHHh-hccccCChhhHHHHH
Q 007091 151 PAHPALN-EDGRDS--LRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP-EENAFWTFVGIIDD-YFDGYYTEEMIEAQV 225 (618)
Q Consensus 151 p~~~~f~-~~g~~~--L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~-EedAFw~l~~Lm~~-~l~~yf~~~~~~l~~ 225 (618)
|.++.|+ ..+... |+|||.+|+.+||.+|||||||+|+|+||.+|+ |++|||||++||+. +++++|..++.|++.
T Consensus 269 ~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~ 348 (496)
T COG5210 269 PDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHR 348 (496)
T ss_pred cccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHH
Confidence 9999996 334444 999999999999999999999999999999999 99999999999994 589999999999999
Q ss_pred HHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhh
Q 007091 226 DQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALV 305 (618)
Q Consensus 226 ~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL 305 (618)
++.++..+++..+|+||.||...|+...+|+++||+|+|.+.+|++.++||||++|++|..+ +|.+++|++...+..++
T Consensus 349 ~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~-l~~~~~~~l~~~~~~l~ 427 (496)
T COG5210 349 DLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSM-LFQLALAILKLLRDKLL 427 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred cCCCHHHHHHHHHhc
Q 007091 306 TTKDAGDAITLLQSL 320 (618)
Q Consensus 306 ~~~d~~ei~~lLq~l 320 (618)
.+.....+..++..+
T Consensus 428 ~~~~~~~~~~~~~~~ 442 (496)
T COG5210 428 KLDSDELLDLLLKQL 442 (496)
T ss_pred ccCchhHHHHHHHhh
Confidence 987776666666554
No 7
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=9.5e-36 Score=301.91 Aligned_cols=258 Identities=24% Similarity=0.406 Sum_probs=209.6
Q ss_pred CCHHHHHHHhhcCCC--hhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhccc-------------ccccC
Q 007091 75 PWKEELESLVHGGVP--KDLRGELWQAFVGVKARR----------TESYYQDLLAQEINADE-------------SKEHD 129 (618)
Q Consensus 75 ~~~ekLk~lir~GIP--~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~~-------------~~~~~ 129 (618)
++.++|+.++..|+| ..+|+.+|++++|+.+.. ....|...+........ ...++
T Consensus 23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP 102 (370)
T KOG4567|consen 23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP 102 (370)
T ss_pred hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence 677899999999999 679999999999997632 23456555544321110 00010
Q ss_pred CC---------CCCchhhHHHHHhcCCCCCCCCCCCChh--------------------------h--HHHHHHHHHHHH
Q 007091 130 NS---------FGVPRKWKKQIEKDIPRTFPAHPALNED--------------------------G--RDSLRRLLLAYA 172 (618)
Q Consensus 130 ~~---------~~~~e~~~~qIekDv~RTfp~~~~f~~~--------------------------g--~~~L~rIL~aya 172 (618)
-+ ++.+.++..||++|+.||.|+..+|+.. | .....|||.+||
T Consensus 103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA 182 (370)
T KOG4567|consen 103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA 182 (370)
T ss_pred CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence 00 2344567789999999999998887421 1 124679999999
Q ss_pred hhCCCCCccccchhHHHHHhhcCC-----------hhHHHHHHHHhHHhhcccc---CChhhHHHHHHHHHHHHHHHHhC
Q 007091 173 LHNPSVGYCQAMNFFAGLLLLLMP-----------EENAFWTFVGIIDDYFDGY---YTEEMIEAQVDQLVFEELIRERF 238 (618)
Q Consensus 173 ~~np~iGY~QGMn~Iaa~LLl~~~-----------EedAFw~l~~Lm~~~l~~y---f~~~~~~l~~~~~vf~~LLk~~~ 238 (618)
..||+|||+||||.|+||+++++. |+|||+||..+|..+-.+| ...+.-|++..+..|..+|+.+|
T Consensus 183 KLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D 262 (370)
T KOG4567|consen 183 KLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHD 262 (370)
T ss_pred hcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhh
Confidence 999999999999999999999982 7899999999998753333 23455678888889999999999
Q ss_pred hhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhhhHhhcCCCHHHHHHHH
Q 007091 239 PKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRV-MLFRTALALMELYGPALVTTKDAGDAITLL 317 (618)
Q Consensus 239 P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~-~LfrvaLALL~~~k~~LL~~~d~~ei~~lL 317 (618)
-+||.||+..++.|.+|+++|+.+|++.+||+++|+||||.+|++..++ +|..+|+|+|...++.|+. .|+...|.+|
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~-~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILE-GDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHh-cchHHHHHHH
Confidence 9999999999999999999999999999999999999999999987766 4677999999999999998 6999999999
Q ss_pred HhccCCCCCHHHHHHHHH
Q 007091 318 QSLAGSTFDSSQLVFTAC 335 (618)
Q Consensus 318 q~l~~~~~D~~~Li~~A~ 335 (618)
|+++ +.|+..++..|-
T Consensus 342 Q~yp--~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 342 QNYP--TTDISKMLAVAD 357 (370)
T ss_pred hcCC--CCCHHHHHHHHH
Confidence 9988 778888886653
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=1.1e-33 Score=278.67 Aligned_cols=212 Identities=38% Similarity=0.698 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCC-ChhhHHHHHHHH
Q 007091 90 KDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPAL-NEDGRDSLRRLL 168 (618)
Q Consensus 90 ~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~~~f-~~~g~~~L~rIL 168 (618)
+++|+.+|+.|+|+.+..... |.............. ........+..++|.+|+.||++..+.+ .+.++..|.+||
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL 77 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNN-YQDEKNQWEQIESKS--SNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERIL 77 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHH-HHHHHHHHHHHHHHH--HHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhh-HHHHhhhhhhhhHHH--HHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHH
Confidence 368999999999997511111 111000000000000 0011122345899999999999955555 466789999999
Q ss_pred HHHHhhCCCCCccccchhHHHHHh-hcCChhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHHHHhChhhhhhccc
Q 007091 169 LAYALHNPSVGYCQAMNFFAGLLL-LLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDY 247 (618)
Q Consensus 169 ~aya~~np~iGY~QGMn~Iaa~LL-l~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LLk~~~P~L~~HL~~ 247 (618)
.+|+.++|++||||||++|+++++ .+.+|++|||||+.++...++.+|..+..+++..+..++.+++.++|+|++||++
T Consensus 78 ~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~ 157 (214)
T PF00566_consen 78 SAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQ 157 (214)
T ss_dssp HHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhh
Confidence 999999999999999999999999 5668899999999999667899999999999999999999999999999999999
Q ss_pred cccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhh
Q 007091 248 LGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALV 305 (618)
Q Consensus 248 lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL 305 (618)
.|+++..|+.+||+|+|++.+|++.++|||| ++.+|.++.++++|+|++..++++||
T Consensus 158 ~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 158 LGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp TT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 77799987688899999999999886
No 9
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-34 Score=297.58 Aligned_cols=258 Identities=23% Similarity=0.376 Sum_probs=217.8
Q ss_pred CCCCCCHHHHHHHhhcCCChhhHHHHHHHHhcCccc----------cCHHHHHHHHHHhhhcccccccCCCCCCchhhHH
Q 007091 71 EPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKAR----------RTESYYQDLLAQEINADESKEHDNSFGVPRKWKK 140 (618)
Q Consensus 71 ~~~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~----------~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~ 140 (618)
....++.++|++++++|||..+|+.+|++|+|+.+. .....|..++......... ....-...+
T Consensus 172 ~~~~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~------~~~~~d~~r 245 (484)
T KOG1092|consen 172 DSPIIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTN------GDEDQDTWR 245 (484)
T ss_pred CcccccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCC------ccccCcccc
Confidence 345677899999999999999999999999998652 2245577777666543321 111223578
Q ss_pred HHHhcCCCCCCCCCCCChh-hHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcC-----C------------------
Q 007091 141 QIEKDIPRTFPAHPALNED-GRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-----P------------------ 196 (618)
Q Consensus 141 qIekDv~RTfp~~~~f~~~-g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-----~------------------ 196 (618)
||..|++|+.|..++|... -++.+.|||..++.++|..||+||.|+++.+++.++ +
T Consensus 246 QI~id~prm~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~ 325 (484)
T KOG1092|consen 246 QIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENA 325 (484)
T ss_pred ccccCCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHH
Confidence 9999999999999999755 578999999999999999999999998888877654 1
Q ss_pred ---hhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHH
Q 007091 197 ---EENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESV 273 (618)
Q Consensus 197 ---EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~v 273 (618)
|.|||||+..|++.+. +-|....+|++.....++.|++..|+.+++||+.+|++...|+++|+.|||.++||+..+
T Consensus 326 ~~iEADsyWClskLLD~IQ-DNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~ 404 (484)
T KOG1092|consen 326 EDIEADAYWCLSKLLDGIQ-DNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCT 404 (484)
T ss_pred hhhhhhHHHHHHHHHHHhh-hhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhH
Confidence 7799999999999854 556678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCch--HHHHHHHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCCCH---HHHHHHHHH
Q 007091 274 LRVWDVLLYEGNRV--MLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDS---SQLVFTACM 336 (618)
Q Consensus 274 lRIWD~ff~eG~~~--~LfrvaLALL~~~k~~LL~~~d~~ei~~lLq~l~~~~~D~---~~Li~~A~~ 336 (618)
+|+||.|++++..+ ++..||+|+|..++++|++ +|+.+++.+||+++...|.- +-|+..|+.
T Consensus 405 iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e-~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~ 471 (484)
T KOG1092|consen 405 IRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELME-NDFQELILFLQNLPTHNWSDREIELLLSEAFR 471 (484)
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 99999999996655 4556999999999999995 79999999999999999854 445666654
No 10
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=5.7e-29 Score=268.17 Aligned_cols=248 Identities=23% Similarity=0.375 Sum_probs=214.3
Q ss_pred CCCCCCHHHHHHHhhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 007091 71 EPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (618)
Q Consensus 71 ~~~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTf 150 (618)
.+.+..+..+-...+.|+|+-+|+.+|..|||+...+... |..+ ...+. -.+.+||+.|++|++
T Consensus 339 ~g~~~k~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~~a~-y~~I-Dk~Ts--------------~~tdrqievdiprch 402 (725)
T KOG1093|consen 339 DGYPKKRLQILREAYVDVPPLYRGFIWAALLQLEENHTAF-YTLI-DKGTS--------------HSTDRQIEVDIPRCH 402 (725)
T ss_pred ccchHHHHHHHHHhccCCChhHhHHHHHHHhcCccccchh-hhhh-hcCCC--------------Ccchhhhhcccchhh
Confidence 3444455666666778999999999999999987665543 4333 22221 114689999999999
Q ss_pred CCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcC--ChhHHHHHHHHhHHhhccccCCh-hhHHHHHH
Q 007091 151 PAHPALN-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM--PEENAFWTFVGIIDDYFDGYYTE-EMIEAQVD 226 (618)
Q Consensus 151 p~~~~f~-~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~--~EedAFw~l~~Lm~~~l~~yf~~-~~~~l~~~ 226 (618)
....... ..|...|+|+|.|++..+|...|.||+..+|+||++.. +|.-||.|+..++-+|+.+||.. +...++..
T Consensus 403 Qyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikey 482 (725)
T KOG1093|consen 403 QYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEY 482 (725)
T ss_pred hcccccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Confidence 8877665 56899999999999999999999999999999998754 78899999999999999999887 55667788
Q ss_pred HHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhc
Q 007091 227 QLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVT 306 (618)
Q Consensus 227 ~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL~ 306 (618)
+..|..++..|+|+|++||..+|+.+.+|+++||+|+|+++||.+..+.+||.++..++.| .+.+++|++...++.||.
T Consensus 483 Ls~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SF-plmi~vAil~~lR~~LLa 561 (725)
T KOG1093|consen 483 LSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSF-PLMIGVAILIQLRDPLLA 561 (725)
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999 667999999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCHHHHHHHHHHhh
Q 007091 307 TKDAGDAITLLQSLAGSTFDSSQLVFTACMGY 338 (618)
Q Consensus 307 ~~d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~ 338 (618)
| ++.|.+.++.+.+ .+|.+..|..++..|
T Consensus 562 ~-nfne~illf~d~p--dldId~~Ires~~l~ 590 (725)
T KOG1093|consen 562 C-NFNECILLFSDLP--DLDIDVCIRESYHLM 590 (725)
T ss_pred C-CchhheeeeccCC--cccHHHHHHHHhhhh
Confidence 7 8999999999988 889999998887644
No 11
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=265.46 Aligned_cols=235 Identities=32% Similarity=0.556 Sum_probs=211.0
Q ss_pred CCCCCHHHHHHHhhcCCChhhHHHHHHHHhcCcc---------ccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHH
Q 007091 72 PYFPWKEELESLVHGGVPKDLRGELWQAFVGVKA---------RRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQI 142 (618)
Q Consensus 72 ~~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~---------~~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qI 142 (618)
+...+.+.+-..++.|+|.+-||++|.++.--.. +...--|+++++..+. -.+.|
T Consensus 562 ~~k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqLte----------------~qhAi 625 (948)
T KOG4436|consen 562 KIKKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQLTE----------------QQHAI 625 (948)
T ss_pred cccccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHHHH----------------HHHHH
Confidence 3445778888999999999999999999963211 1122347777776553 25789
Q ss_pred HhcCCCCCCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhh-ccccCCh
Q 007091 143 EKDIPRTFPAHPALN---EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTE 218 (618)
Q Consensus 143 ekDv~RTfp~~~~f~---~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~-l~~yf~~ 218 (618)
..|+.||||+|++|. +.|+..|.++|.+|+..+|++|||||..++|++||++|+|++||-++-.||... ++.-|.+
T Consensus 626 ~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~r~~r~qy~p 705 (948)
T KOG4436|consen 626 LIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFDRGMRKQYRP 705 (948)
T ss_pred HHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHHHhhHhhhch
Confidence 999999999999996 458999999999999999999999999999999999999999999999999875 5667899
Q ss_pred hhHHHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 007091 219 EMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALME 298 (618)
Q Consensus 219 ~~~~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~ 298 (618)
.|..++..++.+..++..+.|+||+|++...|.|..|+.+||+|.|+.-||+..+.||+|.+|..|..+ +|.+++++|.
T Consensus 706 dm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tev-ifK~a~~lls 784 (948)
T KOG4436|consen 706 DMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEV-IFKVALSLLS 784 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccch-hhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HhhhHhhcCCCHHHHHHHHHhccCC
Q 007091 299 LYGPALVTTKDAGDAITLLQSLAGS 323 (618)
Q Consensus 299 ~~k~~LL~~~d~~ei~~lLq~l~~~ 323 (618)
.++..|+.++++++|+.++++..+.
T Consensus 785 v~k~~l~e~dn~e~i~d~~k~~~p~ 809 (948)
T KOG4436|consen 785 VHKQLLLEKDNFEEIVDFLKTTLPK 809 (948)
T ss_pred hhHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9999999999999999999987754
No 12
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=264.77 Aligned_cols=279 Identities=21% Similarity=0.426 Sum_probs=206.1
Q ss_pred cccCCCCCCcccccccccccccCCccccC-CCCCCCCCCCCCCCCCCCHHHHHHHhhcCCChhhHHHHHHHHhcCccc--
Q 007091 30 ARSSGGESDEDIKEKVCVTVTSYGSVNGL-DDKGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKAR-- 106 (618)
Q Consensus 30 ~~~~~~~~~~~~e~e~~~~~~~~~~~~~~-~d~~s~~~~~~~~~~~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~-- 106 (618)
.+..-.+.+..++++-+..+....+..+- |+.|++.+...++ |.++.+||..++|++||++|+..+.-
T Consensus 386 ~rpel~~se~hpde~~~kki~~n~~~~t~lne~gqiedd~~lr---------k~iffggid~sir~evwpfllk~ys~es 456 (781)
T KOG2224|consen 386 CRPELKKSEMHPDEGDVKKIGTNAFLGTHLNEKGQIEDDLKLR---------KAIFFGGIDKSIRGEVWPFLLKCYSFES 456 (781)
T ss_pred ecCCCCccccCCccchhhhhhHHHHHHhhhhhcccchhHHHhh---------hhheeccchhhhhcchhHHHHHHhcccc
Confidence 34455566778888888888888888765 8888888887765 78889999999999999999988652
Q ss_pred ----------cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCCC---hhhHHHHHHHHHHHHh
Q 007091 107 ----------RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALN---EDGRDSLRRLLLAYAL 173 (618)
Q Consensus 107 ----------~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~~~f~---~~g~~~L~rIL~aya~ 173 (618)
.....|+++.++... ++........++.+.-.++|||.||..+++||. +++.+.+++||..||.
T Consensus 457 t~edr~al~~~krkey~eiqqkrly---smspeeh~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~av 533 (781)
T KOG2224|consen 457 TFEDRAALMDIKRKEYEEIQQKRLY---SMSPEEHIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAV 533 (781)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhh---cCCHHHHHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhhee
Confidence 124567777655431 122111122333333467899999999999995 4568999999999999
Q ss_pred hCCCCCccccchhHHHHHhh-cCChhHHHHHHHHhHHhh-------------------------ccccC--ChhhHHHHH
Q 007091 174 HNPSVGYCQAMNFFAGLLLL-LMPEENAFWTFVGIIDDY-------------------------FDGYY--TEEMIEAQV 225 (618)
Q Consensus 174 ~np~iGY~QGMn~Iaa~LLl-~~~EedAFw~l~~Lm~~~-------------------------l~~yf--~~~~~~l~~ 225 (618)
|||.+||.|||+++.|+.|. +-+|.++||||+++|+.+ ...|| ++....+..
T Consensus 534 yn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~ 613 (781)
T KOG2224|consen 534 YNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDH 613 (781)
T ss_pred ecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhH
Confidence 99999999888877666654 335555666666655521 01232 334455666
Q ss_pred HHHHHHHHHHHhChhhhhhccccccc--cchhhhhhhhhhhcccCChHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhh
Q 007091 226 DQLVFEELIRERFPKLVHHLDYLGVQ--VTWISGPWFLSIFVNILPWESVLRVWDVLLYE--GNRVMLFRTALALMELYG 301 (618)
Q Consensus 226 ~~~vf~~LLk~~~P~L~~HL~~lgi~--~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~e--G~~~~LfrvaLALL~~~k 301 (618)
.+..+++|++...|.+|+||..+|-+ -.+||.+|++.+|.++||-..++|||...++. ...|.| ++|+||+-.+.
T Consensus 614 ~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y~tdyfhl-ficlaiiaiy~ 692 (781)
T KOG2224|consen 614 NLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHL-FICLAIIAIYA 692 (781)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHhh
Confidence 67789999999999999999998854 34899999999999999999999999999985 333444 49999999999
Q ss_pred hHhhcCC-CHHHHHHHHHhcc
Q 007091 302 PALVTTK-DAGDAITLLQSLA 321 (618)
Q Consensus 302 ~~LL~~~-d~~ei~~lLq~l~ 321 (618)
+.++..+ -.++++..+-++.
T Consensus 693 ddvi~q~l~~demllhf~nla 713 (781)
T KOG2224|consen 693 DDVIAQNLAPDEMLLHFGNLA 713 (781)
T ss_pred hHHHHhhcCchhHHHhhhhhh
Confidence 9888654 4455555555543
No 13
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.94 E-value=2.1e-26 Score=249.57 Aligned_cols=242 Identities=32% Similarity=0.525 Sum_probs=205.3
Q ss_pred CCCHHHHHHHhhcCCChhhHHHHHHHHhcCccccC----HHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCC
Q 007091 74 FPWKEELESLVHGGVPKDLRGELWQAFVGVKARRT----ESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRT 149 (618)
Q Consensus 74 ~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~----~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RT 149 (618)
.....++...+..|||..+|+.+|..+++.-.... ...|........ ..-..+| +|+.||
T Consensus 132 ~~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~-~d~~Rt 195 (397)
T KOG1102|consen 132 LRRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQLDEPE---------------PHESEII-RDLSRT 195 (397)
T ss_pred cccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHhhccCC---------------CchhHHH-hhccCc
Confidence 34456777888899999999999999998732222 222222221110 0014567 999999
Q ss_pred CCCCCCCCh---hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhccccCChhhHHHHHH
Q 007091 150 FPAHPALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVD 226 (618)
Q Consensus 150 fp~~~~f~~---~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~ 226 (618)
||.+..|.. .++..|.+|+.+|+.++|++||||||..++++++.+++|++|||+++.+|..+..++|..+..+++..
T Consensus 196 ~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~~~~~~~~~~~~l~~~ 275 (397)
T KOG1102|consen 196 FPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNYGLDLLSPGFSGLQRS 275 (397)
T ss_pred CcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhccchhcccccCCchhhh
Confidence 999999965 57899999999999999999999999999999999999999999999999998666668889999999
Q ss_pred HHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhc
Q 007091 227 QLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVT 306 (618)
Q Consensus 227 ~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL~ 306 (618)
...+..+++.+.|.++.|+...+++..+|+.+||+|+|+..+|++.++||||+++.+|..+ ++++++++++...+.++.
T Consensus 276 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i-~~~~~~~l~~~~~~~~~~ 354 (397)
T KOG1102|consen 276 FRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSI-LFRFSLALLKHKADDLLD 354 (397)
T ss_pred HHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHH-HHHHHHHHhhhhhHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999766 899999999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCHHHHHHH
Q 007091 307 TKDAGDAITLLQSLAGSTFDSSQLVFT 333 (618)
Q Consensus 307 ~~d~~ei~~lLq~l~~~~~D~~~Li~~ 333 (618)
. +++.++.+++......++.......
T Consensus 355 ~-~~e~~~~~l~~~~~~~~~~~~~~~~ 380 (397)
T KOG1102|consen 355 L-DFESLLSYLRVDLPKSYDSELSDKY 380 (397)
T ss_pred c-cHHHHHHHHhcccHhhcCccchhHH
Confidence 6 5999999999877666655544433
No 14
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-23 Score=216.22 Aligned_cols=253 Identities=16% Similarity=0.210 Sum_probs=204.8
Q ss_pred CCHHHHHHHhhc--C-CChhhHHHHHHHHhcCccccCH-HHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 007091 75 PWKEELESLVHG--G-VPKDLRGELWQAFVGVKARRTE-SYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (618)
Q Consensus 75 ~~~ekLk~lir~--G-IP~~lR~~VW~~LLGv~~~~~~-~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTf 150 (618)
.+.+.|+.+-.+ | +.+++|+.||+.|+|...+..+ ..|.+.++... -..|+..|+.|+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~~~~~~~~q~hk-----------------d~nQV~LDv~RSl 108 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDATSTLTPVQKHK-----------------DYNQVILDVERSL 108 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCcccccCChhhhCc-----------------ccceEEEehhhhh
Confidence 345556655442 3 4789999999999998776542 12222222211 1579999999997
Q ss_pred CCCCC----CCh-hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhccccCChhhHHHHH
Q 007091 151 PAHPA----LNE-DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQV 225 (618)
Q Consensus 151 p~~~~----f~~-~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~ 225 (618)
...|- -.. .-+..|..++......||.+.|.||.|+||..||++++|.+|+-+...+...++++|+.+++.+...
T Consensus 109 ~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~~lrdfM~~Tld~t~~ 188 (395)
T KOG2595|consen 109 GRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELSTLHLRDFMLPTLDFTVR 188 (395)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54442 211 2356777788788888999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccC-ChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHh
Q 007091 226 DQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNIL-PWESVLRVWDVLLYEGNRVMLFRTALALMELYGPAL 304 (618)
Q Consensus 226 ~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~L-p~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~L 304 (618)
.+..+..+++..+|+||+.|++..+ -.+|+.+|++|||+|.+ ++..++|++|+|++..+-..+| ++.+++..++..|
T Consensus 189 qL~~i~~iIk~~nP~Ly~~l~~aev-gtlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piy-v~A~vvL~r~~eI 266 (395)
T KOG2595|consen 189 QLRLISPIIKEVNPELYQFLQSAEV-GTLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIY-VYAAVVLYRRSEI 266 (395)
T ss_pred HHHHHHHHHhhcChHHHHHHHhhcc-cceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHH-HHHHHhhhhHHHH
Confidence 9999999999999999999998887 45799999999999999 8999999999999999876454 9999999999999
Q ss_pred hcCC-CHHHHHHHHHhccCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007091 305 VTTK-DAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQ 347 (618)
Q Consensus 305 L~~~-d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~ 347 (618)
++|. |+.-+-.+|+.+| .....++++.+++..+.+.+...+.
T Consensus 267 l~~~~dms~~H~lLs~iP-q~lp~d~lik~s~~~i~~~~~t~~~ 309 (395)
T KOG2595|consen 267 LKCDCDMSLLHGLLSTIP-QDLPYDTLIKESVLLITRKPATLLA 309 (395)
T ss_pred HHHHhhhHHHHHHHHhCc-cccCHHHHHHHHHHHHhcCChhhhh
Confidence 9986 5554445666665 4788999999999988888877664
No 15
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.7e-24 Score=209.32 Aligned_cols=168 Identities=32% Similarity=0.593 Sum_probs=153.8
Q ss_pred HHHHHhhcCCChhhHHHHHHHHhcCccc--cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCC
Q 007091 79 ELESLVHGGVPKDLRGELWQAFVGVKAR--RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPAL 156 (618)
Q Consensus 79 kLk~lir~GIP~~lR~~VW~~LLGv~~~--~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~~~f 156 (618)
+++--|+.|||+++|+..|..|.|+... .++..|..+....+ +.++.+.|.+|++|.||.|.+|
T Consensus 95 ~ir~rcrkgippslr~Raw~ylsGa~~~~~~np~~~~~~~~~pG--------------~p~t~e~i~kdl~rqfp~hemf 160 (267)
T KOG2221|consen 95 KIRPRCRKGIPPSLRGRAWRYLSGAPSPPPKNPVVFDELGPAPG--------------DPKTAEGIHKDLHRQFPFHEMF 160 (267)
T ss_pred cccchhhcCCCcccchhHHHhhcCCCCCCCCCcchhhhccCCCC--------------CCcchhhhccccccCCCccccc
Confidence 4666789999999999999999999764 45778887765444 2346899999999999999999
Q ss_pred C---hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHH
Q 007091 157 N---EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEEL 233 (618)
Q Consensus 157 ~---~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~L 233 (618)
. ..|++.|.|+|.+|..++|+.||||+-..|++++|+.|++++|||||+.++++|+++||......++.+-.++..|
T Consensus 161 ~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqicekylqgy~~sgleaiq~dg~il~~L 240 (267)
T KOG2221|consen 161 GSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKYLQGYYSSGLEAIQNDGGILEGL 240 (267)
T ss_pred ccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHHcccccccchhhhhcccHHHHHH
Confidence 5 3468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhChhhhhhccccccccchhhhhhh
Q 007091 234 IRERFPKLVHHLDYLGVQVTWISGPWF 260 (618)
Q Consensus 234 Lk~~~P~L~~HL~~lgi~~~~f~~~Wf 260 (618)
+++.+|-.|.||...++++..|.+.||
T Consensus 241 lkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 241 LKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHhcCCCCCcccccCCCCHHHhhhccC
Confidence 999999999999999999999999998
No 16
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3e-23 Score=224.28 Aligned_cols=203 Identities=24% Similarity=0.381 Sum_probs=162.9
Q ss_pred CCCchhhHHHHHhcCCCCCCCC-CCCChhh-HHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCC-------------
Q 007091 132 FGVPRKWKKQIEKDIPRTFPAH-PALNEDG-RDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP------------- 196 (618)
Q Consensus 132 ~~~~e~~~~qIekDv~RTfp~~-~~f~~~g-~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~------------- 196 (618)
++.+.+....|..|+.||||++ .+|+.++ +..|++||..|+..+|.+||-||||.+.|+++++.-
T Consensus 98 fF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~ 177 (625)
T KOG1091|consen 98 FFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESL 177 (625)
T ss_pred hcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhh
Confidence 4566778899999999999999 8887665 689999999999999999999999999999987651
Q ss_pred -------hhH-----------HH--HHHHHhHHh--h-c---ccc-----------------CChhhHHHHHHHHHHHHH
Q 007091 197 -------EEN-----------AF--WTFVGIIDD--Y-F---DGY-----------------YTEEMIEAQVDQLVFEEL 233 (618)
Q Consensus 197 -------Eed-----------AF--w~l~~Lm~~--~-l---~~y-----------------f~~~~~~l~~~~~vf~~L 233 (618)
|.+ ++ -+++.+|.. + . .++ +.++.+.+......+..+
T Consensus 178 ~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~l 257 (625)
T KOG1091|consen 178 FDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHL 257 (625)
T ss_pred hhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhh
Confidence 212 22 233333321 0 0 011 112234455566688999
Q ss_pred HHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHH-HHHhcCCchHHH-HHHHHHHHHhhhHhhcCCCHH
Q 007091 234 IRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWD-VLLYEGNRVMLF-RTALALMELYGPALVTTKDAG 311 (618)
Q Consensus 234 Lk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD-~ff~eG~~~~Lf-rvaLALL~~~k~~LL~~~d~~ 311 (618)
+...++.||.||..+||.|++|..||+..||.++||+.+++-||| +.|+.++...|. ++++++|...++.|+...+.+
T Consensus 258 L~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~t 337 (625)
T KOG1091|consen 258 LAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQT 337 (625)
T ss_pred hhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999 888888876333 588999999999999975555
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHH
Q 007091 312 DAITLLQSLAGSTFDSSQLVFTACM 336 (618)
Q Consensus 312 ei~~lLq~l~~~~~D~~~Li~~A~~ 336 (618)
.+.+|-++|. ..|++.+|..|..
T Consensus 338 -cL~~Lm~yP~-~~Dv~~~iekAl~ 360 (625)
T KOG1091|consen 338 -CLQYLMNYPE-IIDVDKFIEKALH 360 (625)
T ss_pred -HHHHHhcCCC-cCcHHHHHHHHHH
Confidence 8888888864 8899999999875
No 17
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.84 E-value=6.5e-21 Score=210.94 Aligned_cols=234 Identities=25% Similarity=0.386 Sum_probs=182.7
Q ss_pred HHhhcCCChhhHHHHHHHHhcCccccCHH-----------HHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 007091 82 SLVHGGVPKDLRGELWQAFVGVKARRTES-----------YYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (618)
Q Consensus 82 ~lir~GIP~~lR~~VW~~LLGv~~~~~~~-----------~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTf 150 (618)
..+.+|+-+.+|+.+|+.+.+..+..... .|......+............. .......|.+|+.||.
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~--~~~~~~~i~~dv~rtD 249 (488)
T KOG2197|consen 172 RIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEG--YLERKSRIEKDVGRTD 249 (488)
T ss_pred eecccccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccc--hhhhhhhhhhhccccc
Confidence 56677887799999999999987644322 3555555554322111111111 2345678999999999
Q ss_pred CCCCCCC-hh--hHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcC-ChhHHHHHHHHhHHhhccccCChhhHHHHHH
Q 007091 151 PAHPALN-ED--GRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-PEENAFWTFVGIIDDYFDGYYTEEMIEAQVD 226 (618)
Q Consensus 151 p~~~~f~-~~--g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~ 226 (618)
+.+.++. .. ....|.+||.+|+.+|+++||||||++++++++.++ +|.+|||||+.+|++..++| ..+..+++..
T Consensus 250 r~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF-~~d~~~~~~Q 328 (488)
T KOG2197|consen 250 RSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNF-RIDQSGMQTQ 328 (488)
T ss_pred hhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcC-ccccccHHHH
Confidence 9999885 23 378999999999999999999999999999999988 57899999999999966555 4456677777
Q ss_pred HHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhhhHhh
Q 007091 227 QLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRV-MLFRTALALMELYGPALV 305 (618)
Q Consensus 227 ~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~-~LfrvaLALL~~~k~~LL 305 (618)
+..+..+++..+|.+|.||+..+....+|+++|++.+|-++|.+++++++|.+++..-... +.+.++.|++......|+
T Consensus 329 l~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~~~l~ 408 (488)
T KOG2197|consen 329 LAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDPQTLM 408 (488)
T ss_pred hhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcchHHHH
Confidence 7778899999999999999999999999999999999999999999999999999864332 245599999999777777
Q ss_pred cCC-CHHHHHHHHH
Q 007091 306 TTK-DAGDAITLLQ 318 (618)
Q Consensus 306 ~~~-d~~ei~~lLq 318 (618)
... +..+++..+.
T Consensus 409 ~~~~~~~e~l~~i~ 422 (488)
T KOG2197|consen 409 EQGKSFNEVLKHVN 422 (488)
T ss_pred hcCccchhHHhhcc
Confidence 644 3444443343
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.77 E-value=2e-18 Score=192.51 Aligned_cols=247 Identities=25% Similarity=0.338 Sum_probs=207.5
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHhcCccccC---HHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCC
Q 007091 77 KEELESLVHGGVPKDLRGELWQAFVGVKARRT---ESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAH 153 (618)
Q Consensus 77 ~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~---~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~ 153 (618)
..+|+.++.+|||+..|-.+|+.|+....+.. .+.|+++...... ...+.+...|.+|+.||.|.|
T Consensus 174 ~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~-----------~Ek~~~~~~Irrdi~~~~~eh 242 (948)
T KOG4436|consen 174 LHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQ-----------QEKELHIGIIRRDIERTYPEH 242 (948)
T ss_pred hhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcch-----------hhhhHHHHHHHHHhhccCcce
Confidence 35789999999999999999999998888773 4556655443221 112335779999999999999
Q ss_pred CCCCh---h-------hHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhh-ccccCChhhHH
Q 007091 154 PALNE---D-------GRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTEEMIE 222 (618)
Q Consensus 154 ~~f~~---~-------g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~-l~~yf~~~~~~ 222 (618)
.+|.+ . +++.|+++..+|....-++|||||-+++++++++.++++.+|..++.+|..+ ++..+.+.+..
T Consensus 243 ~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~~rl~~l~kpe~~~ 322 (948)
T KOG4436|consen 243 YFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMILYRLRELSKPEMEP 322 (948)
T ss_pred eeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHhhcccccCCcccch
Confidence 99953 2 4799999999999999999999999999999999999999999999999988 68899999999
Q ss_pred HHHHHHHHHHHHHHhCh-hhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 007091 223 AQVDQLVFEELIRERFP-KLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYG 301 (618)
Q Consensus 223 l~~~~~vf~~LLk~~~P-~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k 301 (618)
+-.+.+.++.......| +++.|+...+++.++|...||++.|...||+...-|+.|+|.++|... .|++.+|++....
T Consensus 323 l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk-~fr~~ia~~~~~~ 401 (948)
T KOG4436|consen 323 LGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLK-RFRDSIAYLHQLR 401 (948)
T ss_pred hHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHH-HHhhhHHHHHHHh
Confidence 99899999999999999 999999999999999999999999999999999999999999999987 7899999994444
Q ss_pred hHhhcCCCHHHHHHHHHhccCCCC--CHHHHHHHHH
Q 007091 302 PALVTTKDAGDAITLLQSLAGSTF--DSSQLVFTAC 335 (618)
Q Consensus 302 ~~LL~~~d~~ei~~lLq~l~~~~~--D~~~Li~~A~ 335 (618)
+.=+...|++.+..+++.--...+ +++.+...|.
T Consensus 402 d~~~~s~D~EG~~~~~qr~~s~~vggtp~k~~t~a~ 437 (948)
T KOG4436|consen 402 DIELESLDMEGMLSYFQRNRSNTVGGTPDKLRTAAW 437 (948)
T ss_pred hhhhhccCccccccchhhccccccCCCCchHHHHHH
Confidence 444444588888777774333333 5555555553
No 19
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.57 E-value=1.8e-14 Score=152.70 Aligned_cols=239 Identities=19% Similarity=0.323 Sum_probs=173.8
Q ss_pred CCChhhHHHHHHHHhcCccccCH-HHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCCChh---hHH
Q 007091 87 GVPKDLRGELWQAFVGVKARRTE-SYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNED---GRD 162 (618)
Q Consensus 87 GIP~~lR~~VW~~LLGv~~~~~~-~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~~~f~~~---g~~ 162 (618)
|=|..+ |+.+||+..+..+ ..+..+..-. -..+|.+|..|.-.....-.++ -..
T Consensus 36 G~~~~~----W~~~L~V~~K~d~l~~wd~iydLp------------------~Q~~lr~DC~~~~d~l~n~ee~~v~vv~ 93 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPNPLDDWDQIYDLP------------------NQCALRNDCRKLADGLKNKEEDKVPVVS 93 (669)
T ss_pred CCCHHH----HHHHhcccCCCCchhhHHHHhCCc------------------hhhHHHHHHHHHHhhcCCchhhccchhH
Confidence 456665 9999999765433 2333332211 1356666655443222111121 134
Q ss_pred HHHHHHHHHHhhCCCCCccccchh---HHHHHhhcCChhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHHHHhCh
Q 007091 163 SLRRLLLAYALHNPSVGYCQAMNF---FAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFP 239 (618)
Q Consensus 163 ~L~rIL~aya~~np~iGY~QGMn~---Iaa~LLl~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LLk~~~P 239 (618)
.|..++.-|+. +.++.|...... +-.++++.+|-.+.|-||..++.+|+|.-..+....+ ..|+-||..|+|
T Consensus 94 dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~F----h~FRLLlqYHdP 168 (669)
T KOG3636|consen 94 DLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIF----HLFRLLLQYHDP 168 (669)
T ss_pred hhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccc----hHHHHHHHhcCH
Confidence 66777766654 456778776664 3444556679999999999999999876655555444 358999999999
Q ss_pred hhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCC--CHHHHHHHH
Q 007091 240 KLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTK--DAGDAITLL 317 (618)
Q Consensus 240 ~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL~~~--d~~ei~~lL 317 (618)
+|+.||+...+.|.+|+..||-+||+...+.+.+.-+||.||-.+.+|++|+.++.||...++.||+.+ +.++++.+|
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfL 248 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFL 248 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999899999999999999999776 678999999
Q ss_pred HhccCC--CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhHH
Q 007091 318 QSLAGS--TFDSSQLVFTACMGYLTVTEARLQELREKHRPA 356 (618)
Q Consensus 318 q~l~~~--~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~ 356 (618)
.+.|.. .-|+.++..-|.. |..-+|.. +|..|...
T Consensus 249 enmp~~L~~eDvpDffsLAqy-Y~~KTP~s---frkD~~~~ 285 (669)
T KOG3636|consen 249 ENMPAQLSVEDVPDFFSLAQY-YSDKTPES---FRKDFHYI 285 (669)
T ss_pred HcCchhcccccchhHHHHHHH-HhhcChHH---hhhhhhHh
Confidence 988763 2377777777754 44444433 35554433
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2e-12 Score=131.41 Aligned_cols=266 Identities=22% Similarity=0.331 Sum_probs=192.9
Q ss_pred CCCCCHHHHHHHhhcCC---ChhhHHHHHHHHhcCcccc----CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHh
Q 007091 72 PYFPWKEELESLVHGGV---PKDLRGELWQAFVGVKARR----TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEK 144 (618)
Q Consensus 72 ~~~~~~ekLk~lir~GI---P~~lR~~VW~~LLGv~~~~----~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIek 144 (618)
-......+||.+.|.|. .+.+|+.|++.|..-.+-+ ....|.+++-.......+...+ .+ +-+
T Consensus 27 lsctelqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclp----lp----efv-- 96 (559)
T KOG2801|consen 27 LSCTELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLP----LP----EFV-- 96 (559)
T ss_pred cchHhHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCccccc----ch----hhc--
Confidence 34556678999999997 6889999999998755432 3467888876544221111100 11 101
Q ss_pred cCCCCCCCCCCCChhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcC-ChhHHHHHHHHhHHhh--ccccCChhhH
Q 007091 145 DIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-PEENAFWTFVGIIDDY--FDGYYTEEMI 221 (618)
Q Consensus 145 Dv~RTfp~~~~f~~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~EedAFw~l~~Lm~~~--l~~yf~~~~~ 221 (618)
.-|--....++..|....+.||.+.+...|+|.||+.++.+++++|+|. +|.++|--.|+++.-- -+.....+..
T Consensus 97 --dntqvpsyclnargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsfl 174 (559)
T KOG2801|consen 97 --DNTQVPSYCLNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFL 174 (559)
T ss_pred --ccCcCchhhhcCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHH
Confidence 1111111123456677899999999999999999999999999999985 8999998888876532 2345556666
Q ss_pred HHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 007091 222 EAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYG 301 (618)
Q Consensus 222 ~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k 301 (618)
.+...+-.|..|+.++....++.+....-+.......|-..+| +++|+-...|++|+|+.+|.++ +|++++||++.+.
T Consensus 175 afesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykv-lyrvalailkffh 252 (559)
T KOG2801|consen 175 AFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKV-LYRVALAILKFFH 252 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHH-HHHHHHHHHHHHH
Confidence 7777778899999999998888887666556666678887777 5799999999999999999998 9999999999876
Q ss_pred hHh----hcCC-CHHHHHHHHHhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007091 302 PAL----VTTK-DAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKH 353 (618)
Q Consensus 302 ~~L----L~~~-d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~ 353 (618)
..- ++.+ -..++-.+.+.+.+ +..+++|+..|+. +.-++.++|+-|...+
T Consensus 253 kvragqplesdsvkqdirtfvrdiak-tvspekllekafa-irlfsrkeiqllqman 307 (559)
T KOG2801|consen 253 KVRAGQPLESDSVKQDIRTFVRDIAK-TVSPEKLLEKAFA-IRLFSRKEIQLLQMAN 307 (559)
T ss_pred HhhcCCCCccchHHHHHHHHHHHHHh-hCCHHHHHHHHHH-HHHhhHHHHHHHHHhh
Confidence 532 2222 23567777787764 7789999999876 5567777776665443
No 21
>PF14961 BROMI: Broad-minded protein
Probab=97.73 E-value=0.00021 Score=85.28 Aligned_cols=187 Identities=16% Similarity=0.256 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhhCCCCCccccchhHHHHHhhcC-C-hhHHHHHHHHhHHhh------ccccC----Chh-------hHHH
Q 007091 163 SLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-P-EENAFWTFVGIIDDY------FDGYY----TEE-------MIEA 223 (618)
Q Consensus 163 ~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-~-EedAFw~l~~Lm~~~------l~~yf----~~~-------~~~l 223 (618)
.-.+++..|..+++.=+| .|...+++-+.+++ . -+.+.-++..|.... .+... .+. .+-.
T Consensus 1085 s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~ 1163 (1296)
T PF14961_consen 1085 SSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVY 1163 (1296)
T ss_pred chhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchh
Confidence 334455555555554444 57775555554444 4 444554444443321 12111 111 1112
Q ss_pred HHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Q 007091 224 QVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPA 303 (618)
Q Consensus 224 ~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~ 303 (618)
...+..++.+|+...|.+|.-|.-.|+.+...|.+|+.-+|=+.|+|..++...=+.+..|+.+.+| +|+|+++..++.
T Consensus 1164 ~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY-~~VailkHlq~~ 1242 (1296)
T PF14961_consen 1164 FCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVY-ICVAILKHLQPE 1242 (1296)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceee-hhHHHHHHhhHH
Confidence 2345679999999999999999999999999999999999999999999999999999999999555 999999999999
Q ss_pred hhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhHHHHHHHHH
Q 007091 304 LVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEE 363 (618)
Q Consensus 304 LL~~~d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~~~ 363 (618)
||+..-..++..+|+.-+-.-|.+.+ +. .-+..|+.+||+.|+..|+.
T Consensus 1243 ilq~~q~q~L~~flke~~l~gF~~~~-----~~-------~yM~~Le~~yR~~vL~~m~~ 1290 (1296)
T PF14961_consen 1243 ILQHTQTQDLQVFLKEEALRGFRVSD-----YL-------EYMENLEQRYRPRVLTDMRN 1290 (1296)
T ss_pred HHHhhhhchHHHHhhhccccceeHHh-----HH-------HHHHHHHHHhHhHHHHHHHH
Confidence 99876666667777654433343222 21 23578899999999988763
No 22
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.62 E-value=5.3e-06 Score=90.02 Aligned_cols=211 Identities=25% Similarity=0.334 Sum_probs=133.5
Q ss_pred HHHHhhcCCChhhHHHHHHHHhcCccc------------cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCC
Q 007091 80 LESLVHGGVPKDLRGELWQAFVGVKAR------------RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIP 147 (618)
Q Consensus 80 Lk~lir~GIP~~lR~~VW~~LLGv~~~------------~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~ 147 (618)
|....++|+....|+.+|+...+-... .....|+..+..+...+ ...|.+|+.
T Consensus 551 l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~~~---------------~~~~~kd~e 615 (813)
T KOG1648|consen 551 LEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFRAN---------------LHRIDKDVE 615 (813)
T ss_pred HHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHhhh---------------eeeecchhh
Confidence 345578999999999999999876431 11245666555443211 467999999
Q ss_pred CCCCCCCCCCh-hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCC-hh---HHHHHHHHhHHh-hccccCChhhH
Q 007091 148 RTFPAHPALNE-DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP-EE---NAFWTFVGIIDD-YFDGYYTEEMI 221 (618)
Q Consensus 148 RTfp~~~~f~~-~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~-Ee---dAFw~l~~Lm~~-~l~~yf~~~~~ 221 (618)
|+..+.-+|.+ ++.+. +++...|...|-+-||.|||.++.++++..+. |. ++|-. ..+.++ .++.+ +
T Consensus 616 ~~~~~~~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~-~~~~q~~~~~q~-----~ 688 (813)
T KOG1648|consen 616 RCDRNLMFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSL-LMLRQRGKFPQR-----P 688 (813)
T ss_pred hCcchheeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcH-HHHHhcccCCCC-----C
Confidence 99999888964 44555 88999999999999999999999999987763 22 34433 222222 12211 1
Q ss_pred HHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcC-----CchHHHHHHHHH
Q 007091 222 EAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEG-----NRVMLFRTALAL 296 (618)
Q Consensus 222 ~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG-----~~~~LfrvaLAL 296 (618)
+....+.-++ ++...+| |-.-+. . ..-..++||+.-|.+.++.+-...+|.+++... ..+.+| ++++.
T Consensus 689 ~~~~~l~~~r-~~~v~~~-l~s~id---~-~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~-~g~~~ 761 (813)
T KOG1648|consen 689 GMSKCLLNLR-LIQVVDP-LISDID---Y-AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIF-FGLAT 761 (813)
T ss_pred Cccccccccc-chhhhcc-hhcchh---h-hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhh-hhhHH
Confidence 1111111111 3444444 111111 1 223458999999999999999999999888752 233344 78877
Q ss_pred HHHhhhHhhcCC-CHHHHHHHHHhc
Q 007091 297 MELYGPALVTTK-DAGDAITLLQSL 320 (618)
Q Consensus 297 L~~~k~~LL~~~-d~~ei~~lLq~l 320 (618)
-. +.+.+...+ +..+++.+++..
T Consensus 762 ~~-~~~~~~t~~~~~t~~i~~~~~~ 785 (813)
T KOG1648|consen 762 TN-YHDVLITNNFDYTDMIKFFNEM 785 (813)
T ss_pred Hh-hHHHHhhcccchHHHHHHHHHH
Confidence 43 344444433 667777777654
No 23
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.27 E-value=4.8 Score=44.27 Aligned_cols=80 Identities=35% Similarity=0.366 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhHHHhHhHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHH
Q 007091 444 LKVELCSLLEDKRSAVLRAEELE----------TALMEMVKQDNRRQLSARIEQLEQEVAELQQ------SLADKREQES 507 (618)
Q Consensus 444 ~~~~~~~ll~e~~~~~~~~~~l~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 507 (618)
|-.+-+-|=|..|+.-+||+|.. -+.+|=++.-..+.+.+++.|||.|+++||- ++.||++-|.
T Consensus 255 LvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 255 LVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445555556667777776642 3577778888888999999999999999995 4566665443
Q ss_pred ----------------------HHHHHHHHHHHhhhhc
Q 007091 508 ----------------------AMIQVLMKVEQEQRIT 523 (618)
Q Consensus 508 ----------------------~~~~~~~~~~~~~~~~ 523 (618)
-|-+.|+|+++|.+-|
T Consensus 335 qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeat 372 (502)
T KOG0982|consen 335 QRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEAT 372 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4566666666665544
No 24
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=83.07 E-value=1.2e+02 Score=36.91 Aligned_cols=143 Identities=25% Similarity=0.239 Sum_probs=87.4
Q ss_pred hccCCCCccccccchHHHHHHHHHHHHHHHHHhHHHh-----HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007091 423 LSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAV-----LRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQ 497 (618)
Q Consensus 423 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~ll~e~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (618)
..+++.+..+.+.+|..+.. .||-.+-++.-++. .--++.-..|++.+..-+.-|+.|--|.+|.|-.||++
T Consensus 1020 ~~~~~~d~~~r~~el~~rq~---~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~ 1096 (1189)
T KOG1265|consen 1020 PAALNSDNAGRVRELVNRQT---QELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKK 1096 (1189)
T ss_pred hhhccchhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666655432 35544544444332 23355677899999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHH--HHHHHHhhhhcHHHhHhhHhh-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 498 SLADKREQESAMIQV--LMKVEQEQRITEDARRNAEQD-------ARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESM 568 (618)
Q Consensus 498 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (618)
.+..|. +|.+-.-- ==+.|+|..++|-++..-+.= |.+|.---.-|+++-.+-...|+++|+ +.-||.+
T Consensus 1097 ~l~kkr-~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~k-al~~e~~ 1174 (1189)
T KOG1265|consen 1097 KLDKKR-MEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK-ALDAEAE 1174 (1189)
T ss_pred HHHHHH-HHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 886554 33322111 125677777777666543321 223333345577777777788888855 4455544
Q ss_pred HH
Q 007091 569 LE 570 (618)
Q Consensus 569 ~~ 570 (618)
-|
T Consensus 1175 ~~ 1176 (1189)
T KOG1265|consen 1175 QE 1176 (1189)
T ss_pred HH
Confidence 33
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.64 E-value=20 Score=42.71 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHh---hHhhHHHhHHHHHHHHHHHHHHH
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRN---AEQDARAQRYAVNVLEEKYEKAM 552 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 552 (618)
+-.+.+..|..+||.|+..||.-|..|+||-..|-+-+ .+.|.+ -+.|+..=--|...||+|-...-
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~----------~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE 607 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL----------QELRKYEKESEKDTEVLMSALSAMQDKNQHLE 607 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44456888999999999999999999999866554333 334443 35688888888899999876655
Q ss_pred HHHH
Q 007091 553 ASVA 556 (618)
Q Consensus 553 ~~~~ 556 (618)
.+|+
T Consensus 608 ~sLs 611 (697)
T PF09726_consen 608 NSLS 611 (697)
T ss_pred Hhhh
Confidence 5554
No 26
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.74 E-value=7.2 Score=31.22 Aligned_cols=42 Identities=33% Similarity=0.547 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHH
Q 007091 479 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRY 539 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (618)
.+|++||.||.++|..+|..+.+-++ |-||...--|.-++.|
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak~-------------------EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAKE-------------------EAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhHhhc
Confidence 46788888888888888865543332 5666666667777776
No 27
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=78.69 E-value=87 Score=37.00 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=40.6
Q ss_pred HHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 007091 456 RSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQR 521 (618)
Q Consensus 456 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (618)
|+....-=.|...|-.-==++.|++.++.+-+|......|.+.|.+++++=...-.-|--.++.+.
T Consensus 487 RdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lq 552 (739)
T PF07111_consen 487 RDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQ 552 (739)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333333324555555444467788888888888888888888888877765544444444444443
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.71 E-value=98 Score=36.97 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 509 MIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESML 569 (618)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (618)
|=.-+-++..|.|..||.-+.+|.+..+-|.-..--+.--|..|.+|+.|.-+..+-|.=|
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344677888899999999999999855444321123357889999999988887655544
No 29
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.69 E-value=47 Score=30.95 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=43.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007091 473 VKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 520 (618)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (618)
-..+...-|..+++.|+..+..|.+.+..+++|=..+.++|.++.+++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999999999999999988765
No 30
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.74 E-value=89 Score=39.11 Aligned_cols=113 Identities=26% Similarity=0.250 Sum_probs=68.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQS-LADKREQESAMIQV 512 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 512 (618)
..+|++-...++.++-++.++++...-++.++|.+ -.+-+..++++..-..+|++++|-+.. |.++ |+ .
T Consensus 632 i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~---~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~---e~----~ 701 (1317)
T KOG0612|consen 632 ISSLEETLKAGKKELLKVEELKRENQERISDSEKE---ALEIKLERKLKMLQNELEQENAEHHRLRLQDK---EA----Q 701 (1317)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH----H
Confidence 44555555556666666666666655555555554 456677788888888888888887776 4544 22 2
Q ss_pred HHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 007091 513 LMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVA 556 (618)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (618)
+-.+++...=-.+||..||.++..----.+.|.--|-.+-.++-
T Consensus 702 ~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~ 745 (1317)
T KOG0612|consen 702 MKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN 745 (1317)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 23444444444578988888776554445556655554443333
No 31
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=68.95 E-value=99 Score=32.61 Aligned_cols=119 Identities=24% Similarity=0.338 Sum_probs=74.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (618)
..++|..+..+..|++.|..++..+-+..-. -|..|.+.|..=-+-|+-+|..|.+=-+-..|-+
T Consensus 56 It~iQaeI~q~nlEielLkleKeTADltH~~---------------~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~ 120 (277)
T PF15003_consen 56 ITNIQAEIDQLNLEIELLKLEKETADLTHPD---------------YLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPY 120 (277)
T ss_pred HHHHHHHHHhhhHHHHHHHhhcchHhhhCHH---------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 3356666777788888888888877755432 3566777777777777777766654333322222
Q ss_pred HHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHH------HHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Q 007091 514 MKVEQEQRITEDARRNAEQDARAQRYAVNVLE------EKYEKAMA-----------------SVAQMEKRAVMAESMLE 570 (618)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 570 (618)
. .-.---+|.-|||++++|. ++-++.+. +|++|+-.+.=-|...|
T Consensus 121 ----~--------qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~~~~m~~aL~ki~~lvae~E~l~e 188 (277)
T PF15003_consen 121 ----C--------QENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDENPSNMDKALAKIDALVAECEELAE 188 (277)
T ss_pred ----h--------hcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112235778999999987 33333332 56667666666778888
Q ss_pred HHhhhcccc
Q 007091 571 ATLQYESGQ 579 (618)
Q Consensus 571 ~~~~~~~~~ 579 (618)
+.+++...|
T Consensus 189 ~ilkwRe~~ 197 (277)
T PF15003_consen 189 QILKWREQQ 197 (277)
T ss_pred HHHHHHHHH
Confidence 888876554
No 32
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=68.44 E-value=2.6e+02 Score=34.62 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=3.9
Q ss_pred HHHHHHHHhc
Q 007091 93 RGELWQAFVG 102 (618)
Q Consensus 93 R~~VW~~LLG 102 (618)
|..+-...+|
T Consensus 157 ~~~~~~~~~~ 166 (1179)
T TIGR02168 157 RRAIFEEAAG 166 (1179)
T ss_pred HHHHHHHHcc
Confidence 3333333333
No 33
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=67.96 E-value=2.3e+02 Score=32.59 Aligned_cols=126 Identities=25% Similarity=0.273 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHH
Q 007091 443 WLKVELCSLLEDKRSAVLRAEELETALMEMVKQDN------RRQLSARIEQLEQEVAELQQSLADKREQES----AMIQV 512 (618)
Q Consensus 443 ~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 512 (618)
-.+..|.+.-++..+-....+-|...| +-++.+. -...++.|.+|+.++..+|.-|.-.++-|. +|--.
T Consensus 292 ~ak~~L~~~k~E~~~L~~~vesL~~EL-e~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l 370 (522)
T PF05701_consen 292 EAKKELEKAKEEASSLRASVESLRSEL-EKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSEL 370 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHH
Confidence 334444444444444434444444433 2222222 234567889999999999988865554443 34444
Q ss_pred HHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007091 513 LMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATL 573 (618)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (618)
-..++|=..-+|.|+. .+..-+--+..+.+-.|.+-+.+..||.|...|--++||..
T Consensus 371 ~~~Lqql~~Eae~Ak~----ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 371 PKALQQLSSEAEEAKK----EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666654 44455666777888899999999999999999999998864
No 34
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.61 E-value=64 Score=33.89 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007091 441 VVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQ---EVAELQQSLADKREQESAMIQVLMKVE 517 (618)
Q Consensus 441 ~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (618)
|.||+..|-.+++- .-..+.-+ -.++.++...|.|.++-+.||+ ++.+..+.+++-+++..+|-.-|-++|
T Consensus 168 V~WLR~~L~Ei~Ea----~e~~~~~~--~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 168 VDWLRSKLEEILEA----KEIYDQHE--TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44999876665543 22222222 3455566666776666555544 444455566666777777777776666
Q ss_pred Hh
Q 007091 518 QE 519 (618)
Q Consensus 518 ~~ 519 (618)
.|
T Consensus 242 ~~ 243 (269)
T PF05278_consen 242 ME 243 (269)
T ss_pred HH
Confidence 54
No 35
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=67.60 E-value=3.8 Score=46.56 Aligned_cols=34 Identities=24% Similarity=0.617 Sum_probs=28.4
Q ss_pred CHHHHHHHhhcCCChhhHHHHHHHHhcCccccCH
Q 007091 76 WKEELESLVHGGVPKDLRGELWQAFVGVKARRTE 109 (618)
Q Consensus 76 ~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~~ 109 (618)
+..-++.+..+||++.+|+.+|.+|+|++.....
T Consensus 66 ~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~ 99 (488)
T KOG2197|consen 66 FVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDST 99 (488)
T ss_pred hhhhheeeecCCCCCcccchhHHHHhcccCCCCc
Confidence 5556777888999999999999999999875443
No 36
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.00 E-value=1.2e+02 Score=35.72 Aligned_cols=96 Identities=30% Similarity=0.429 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 436 DLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDN--------------RRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 436 ~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
-+++.+..|+.++|.|-+|+....-+-.+||..|.++=.+-. -.+|.+.++.|..|+..|..-+..
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999999999999999999999998643221 124555555555555555533322
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcH---HHhHhhHhh
Q 007091 502 KREQESAMIQVLMKVEQEQRITE---DARRNAEQD 533 (618)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 533 (618)
|-.++.+|-.|. -|||.++.| .+++..|+.
T Consensus 106 -qv~~ne~Ls~L~-~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 106 -QVENNEQLSRLN-QEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 222333333322 277777765 455555544
No 37
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=66.83 E-value=18 Score=30.63 Aligned_cols=44 Identities=34% Similarity=0.529 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHH
Q 007091 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYA 540 (618)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (618)
-+.|.|||+|||..|..+|- |+|- -=.|-||-.++-|.-+|+|.
T Consensus 34 vq~LnAkv~qLe~dv~a~~~---~~qA----------------Ak~eaarAn~rldn~a~s~~ 77 (78)
T COG4238 34 VQTLNAKVDQLENDVNAMRS---DVQA----------------AKDEAARANQRLDNQAQSYC 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH----------------hHhHHHHHHHHHHHHHHHhc
Confidence 46789999999999877663 3221 11367889999999998884
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=66.79 E-value=2.5e+02 Score=32.56 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007091 441 VVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 520 (618)
Q Consensus 441 ~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (618)
++.|+..|+.+--+.|.+.-....-.++|-..+ .....+|++|..|+..+.+.+..++.+-+ -||+=+-=|++.
T Consensus 334 ~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~-----e~~k~~ie~L~~el~~~e~~lqEer~E~q-kL~~ql~ke~D~ 407 (546)
T PF07888_consen 334 AAQLKLQLADASLELKEGRSQWAQEKQALQHSA-----EADKDEIEKLSRELQMLEEHLQEERMERQ-KLEKQLGKEKDC 407 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence 334455555555555555555555555554322 22345677888888777777765554333 344433334443
Q ss_pred h---hcHHHhHhhHhhHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 521 R---ITEDARRNAEQDARAQRYAV--NVLEEKYEKAMASVAQMEKRAVMA 565 (618)
Q Consensus 521 ~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 565 (618)
. +.|--|...|--++.+.-.. .-|++.-.+.|.-+-++|.|.-|+
T Consensus 408 n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 408 NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 45555666665544332222 124444556777888888887664
No 39
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=66.76 E-value=8.6 Score=37.93 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=29.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007091 472 MVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESA 508 (618)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (618)
+..+.-.++|++++-++|.|+..|||+|+-|+.--.-
T Consensus 40 ~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~E 76 (208)
T KOG4010|consen 40 ALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAE 76 (208)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455588999999999999999999999765443
No 40
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.26 E-value=6.6 Score=38.53 Aligned_cols=28 Identities=50% Similarity=0.624 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 470 MEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
-++...| |.|+|+.||+||++|++-|.+
T Consensus 183 ~a~~s~d----learv~aLe~eva~L~~rld~ 210 (215)
T COG3132 183 PAAASSD----LEARVEALEQEVAELRARLDS 210 (215)
T ss_pred cccccch----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 899999999999999998864
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.14 E-value=1.5e+02 Score=33.28 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=69.5
Q ss_pred CHHHHhccCCCCccccccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHH
Q 007091 418 NLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQL-----SARIEQLEQEV 492 (618)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~~~~ 492 (618)
.+--+|+-++ |...+++..|+..+-.|=....+-...-++|.+.+.+-..+--+-.. ...+.+|++++
T Consensus 147 R~ai~~~~l~-------~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l 219 (420)
T COG4942 147 RLAIYYGALN-------PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219 (420)
T ss_pred HHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566554 56677888899999888888888888888999988887765433211 22356788888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 007091 493 AELQQSLADKREQESAMIQVLMKVE 517 (618)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (618)
+.-++-+..-+-+++..=+++-+.|
T Consensus 220 ~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 220 SADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888888888887777
No 42
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=63.20 E-value=59 Score=39.49 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=76.7
Q ss_pred CchhhhhhccCCCCCCCCCCCCCCccCCCccCHHHHhccCCCCccc---c-ccchHHHHHHHHHHHHHHH-------HHh
Q 007091 387 DPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSEL---E-GRDLQEQVVWLKVELCSLL-------EDK 455 (618)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~q~~~~~~~~~~ll-------~e~ 455 (618)
-|.++.++........+..+|+......+..++-+.|+.-+.-+.- | +|-|..|.+ ++-.|+ -++
T Consensus 831 ~p~~~l~ak~~k~kg~~~~spgl~~t~s~~~~lad~~~~qs~qln~p~ed~~~~l~~qQe----~~a~l~~sQ~el~~~l 906 (1283)
T KOG1916|consen 831 LPAPRLPAKGKKQKGKNSQSPGLSSTSSNVANLADSFNEQSQQLNHPMEDLLPQLLAQQE----TMAQLMASQKELQRQL 906 (1283)
T ss_pred CCCccccccccccCCCcCCCCCccccccchHHHHHHHHHHHhhhcCChhhHHHHHHHHHH----HHHHHHHhHHHHHHHH
Confidence 3444554433333344555566544466777787878765544432 2 555555554 443333 222
Q ss_pred HHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------------HHHHHHHHHHHHh
Q 007091 456 RSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQE------------SAMIQVLMKVEQE 519 (618)
Q Consensus 456 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 519 (618)
+.++-- . ||.+|+-|+++-..+--.|--..|+.++++=.+.+-|-|+|= ++|+---||+|=-
T Consensus 907 ~~ql~g-~-le~~l~~~iEk~lks~~d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~El~ 980 (1283)
T KOG1916|consen 907 SNQLTG-P-LEVALGRMIEKSLKSNADALWARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFEKTIKKELA 980 (1283)
T ss_pred HHhhcc-h-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 1 899999999988877767777778888888888888888873 3455555666643
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.42 E-value=1.7e+02 Score=29.83 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=27.8
Q ss_pred hhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 529 NAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEA 571 (618)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (618)
.-|+....-+.++.-...||+++...|..+|.+.--||.-+++
T Consensus 96 ~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 96 ELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556667777778888777777776666666655443
No 44
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=61.88 E-value=1.3e+02 Score=27.74 Aligned_cols=84 Identities=24% Similarity=0.270 Sum_probs=55.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQD-------------NRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 435 ~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
|+.-++..-|+.+ =.+-++.+-.|..+..++++++.+- .|-.|.+-.++=+.+...|+-.+++
T Consensus 16 p~~~~~t~~Lk~e----c~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~E 91 (120)
T PF14931_consen 16 PEKADQTQELKEE----CKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAE 91 (120)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444555433332 2334445556777777777777643 2445556667778888888888888
Q ss_pred HHHH---HHHHHHHHHHHHHhhhh
Q 007091 502 KREQ---ESAMIQVLMKVEQEQRI 522 (618)
Q Consensus 502 ~~~~---~~~~~~~~~~~~~~~~~ 522 (618)
|+.+ =.+=.|-|++||+||+.
T Consensus 92 k~~eLERl~~E~~sL~kve~eQ~~ 115 (120)
T PF14931_consen 92 KKMELERLRSEYESLQKVEQEQNE 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8744 45667889999999974
No 45
>PRK11637 AmiB activator; Provisional
Probab=61.48 E-value=1.3e+02 Score=33.51 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHH
Q 007091 480 QLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITED 525 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (618)
.+..+++++++++.++++-+.+.+.+...+.+-|-.++.+..-++.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~ 89 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASR 89 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666555555555555555555444433
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.25 E-value=4.7e+02 Score=33.17 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=20.2
Q ss_pred CCCHHHHHHHH---HHhhccCCHHHHHHHHHHhhHH
Q 007091 324 TFDSSQLVFTA---CMGYLTVTEARLQELREKHRPA 356 (618)
Q Consensus 324 ~~D~~~Li~~A---~~~~~~i~~~~L~~LR~k~~~~ 356 (618)
.-|++++-..| +..-...++.+|+.|-.+-...
T Consensus 1488 ~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1488 DADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred CCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 34666554433 4444578889998877664443
No 47
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=58.08 E-value=2.3e+02 Score=29.27 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=49.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007091 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQV 512 (618)
Q Consensus 435 ~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (618)
..|++++..+..+..+.-.+...+.-++..|+..+-.. +..+..|.++...++++...|+..-.+.++.-..|-+=
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~a--eeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQA--EEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888777654 45777888888888888888887666554433334333
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.67 E-value=77 Score=32.03 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=13.5
Q ss_pred CCccccccchHHHHHHHHHHHHHHH
Q 007091 428 VNSELEGRDLQEQVVWLKVELCSLL 452 (618)
Q Consensus 428 ~~~~~~~~~~~~q~~~~~~~~~~ll 452 (618)
|.....+|.++.|+.-++.+|-.+-
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446666666665555555443
No 49
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=57.13 E-value=3.4e+02 Score=31.16 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=64.7
Q ss_pred cCHHHHhccCCCCcccc-ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007091 417 ANLDEMLSGLSVNSELE-GRDLQEQVVWLKVELCSLLEDKRSAVLRAEEL----ETALMEMVKQDNRRQLSARIEQLEQE 491 (618)
Q Consensus 417 ~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l----~~~l~~~~~~~~~~~~~~~~~~~~~~ 491 (618)
..+...+.+.+...... .-.+..|...+++++-++=.|.+.-...-+++ ...+ -++...++....+++.|...
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~~sL~ek 163 (511)
T PF09787_consen 86 RSLSSQFDDLTEASSAKSSDSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRIL--SDESTVSRLQNGAPRSLQEK 163 (511)
T ss_pred hhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chhHHHHHHHHHHHhhHHHH
Confidence 34555555555444333 33556688888888766655555444444444 1111 23445556666666888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHH
Q 007091 492 VAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYA 540 (618)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (618)
+.+|..++.. +++.+...|+.=+..-.+..-.-+..+++=.|...|+
T Consensus 164 l~lld~al~~--~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~ 210 (511)
T PF09787_consen 164 LSLLDEALKR--EDGNAITAVVEFLKRTLKKEIERQELEERPKALRHYI 210 (511)
T ss_pred HHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887764 4556666555544444444333333344333333333
No 50
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=56.61 E-value=4.6 Score=44.45 Aligned_cols=34 Identities=32% Similarity=0.719 Sum_probs=30.5
Q ss_pred CCccccchhHHHHHhh-cCChhHHHHHHHHhHHhh
Q 007091 178 VGYCQAMNFFAGLLLL-LMPEENAFWTFVGIIDDY 211 (618)
Q Consensus 178 iGY~QGMn~Iaa~LLl-~~~EedAFw~l~~Lm~~~ 211 (618)
+|..|||++++|++|- +++|.++||||+++|.+.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcce
Confidence 6888999999999886 679999999999999963
No 51
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.24 E-value=2.2e+02 Score=28.50 Aligned_cols=62 Identities=27% Similarity=0.437 Sum_probs=38.7
Q ss_pred HHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007091 449 CSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQV 512 (618)
Q Consensus 449 ~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (618)
.+-|.+.....=..++--.-+|.=+.++|+ .|+.-++++++||.+|++-|.+ -+...+.|+.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~-~L~epL~~a~~e~~eL~k~L~~-y~kdK~~L~~ 90 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENK-RLSEPLKKAEEEVEELRKQLKN-YEKDKQSLQN 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333333333333333444445555666665 4789999999999999999987 3455554443
No 52
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=55.85 E-value=86 Score=33.59 Aligned_cols=72 Identities=25% Similarity=0.361 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQES 507 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (618)
.-.-+++|..|-.+++.|=...+.-...+|+|-..|.++ .|+.++|.|.+..|...-+|...+|.+-||+=+
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s--ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS--KESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888888888888888888888999999999887 899999999999999999999999999988744
No 53
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=55.50 E-value=4.6e+02 Score=31.93 Aligned_cols=109 Identities=26% Similarity=0.364 Sum_probs=65.3
Q ss_pred HHHHHHHHHhHHHhHhHHHHHHH----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007091 446 VELCSLLEDKRSAVLRAEELETA----------------LMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 509 (618)
Q Consensus 446 ~~~~~ll~e~~~~~~~~~~l~~~----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (618)
.+++.+.|+.|-....++- +.+ ..+-|++++-..+-++.-+-|+.++.-|..|++++.+..-
T Consensus 720 ~e~~e~~Ek~Ri~~~~ae~-e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~leaer~rl~erk~~R~e- 797 (988)
T KOG2072|consen 720 RELYEAREKQRIEAAIAER-ESAVKDKKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEARLEAERNRLAERKRARIE- 797 (988)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-
Confidence 4677777777766665543 333 3456788888889999999999999999889888776532
Q ss_pred HHHHHHHHHhh----hhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 510 IQVLMKVEQEQ----RITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAE 566 (618)
Q Consensus 510 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (618)
|+-| ++.|+.-+.+|..+.+++.-- +..--+......+||+|+-|-|
T Consensus 798 -------erk~~~~re~EEEr~Rr~EEe~~ae~~ee---~~e~akr~~~eRe~e~~~ak~e 848 (988)
T KOG2072|consen 798 -------ERKQAYYREIEEERARREEEEANAERQEE---AAERAKRTEEEREIENRVAKKE 848 (988)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 333444444554454443221 1111123344556666666555
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.14 E-value=1.7e+02 Score=29.57 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 544 LEEKYEKAMASVAQMEKRAVMAESMLEAT 572 (618)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (618)
|.+.|.++-..|+...+.+-.+|..+++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667666666666666666666655543
No 55
>PRK09039 hypothetical protein; Validated
Probab=54.94 E-value=3.1e+02 Score=29.78 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHH
Q 007091 479 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMAS 554 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (618)
..+.++..+|++++++.+...++.+-|=...=|-+-.++...--.+.+=..+|+.-+.++--..-|+.+-+.|+|.
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777665554444444444443333333333333333333333344456666666655
No 56
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.80 E-value=1.7e+02 Score=27.09 Aligned_cols=73 Identities=27% Similarity=0.416 Sum_probs=38.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQ-DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQV 512 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (618)
+..|+.++-.+-.|+.-|=++...-.-.-+++...|..+... |.-+..++ ++.+|++-+.+.+....++||.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~-------~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK-------EVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555545555555555554332 22233333 4444444555556667777776
Q ss_pred H
Q 007091 513 L 513 (618)
Q Consensus 513 ~ 513 (618)
|
T Consensus 91 l 91 (120)
T PF12325_consen 91 L 91 (120)
T ss_pred h
Confidence 6
No 57
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.59 E-value=4.6e+02 Score=31.35 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007091 477 NRRQLSARIEQLEQEVAELQQSLADKREQ 505 (618)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (618)
....|.++..++++++++++....++--+
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~ 317 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPR 317 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Confidence 34555666666676666666655554443
No 58
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.40 E-value=3.1e+02 Score=29.51 Aligned_cols=55 Identities=25% Similarity=0.365 Sum_probs=35.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 007091 468 ALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRI 522 (618)
Q Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (618)
+=..-+..+|+..+.+.-....+|...+++.+...+++...=.+.+.++|+|.+-
T Consensus 120 ~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~~~~~~e~ee~~ 174 (309)
T TIGR00570 120 KKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQM 174 (309)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678888888888888888888888777755444444433444455555543
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.78 E-value=1.9e+02 Score=26.72 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 007091 479 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
..|++.+-++|.|++.++.-++.-+.+...+-+=++++-.+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998888888777777777776443
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.25 E-value=3.9e+02 Score=31.47 Aligned_cols=73 Identities=11% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007091 445 KVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVE 517 (618)
Q Consensus 445 ~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (618)
+.++..++++...-...-+++...|...-..+.-..|..+++.++.++.+++..+...+++-...-.-+-+++
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555556666666555444555666666666666666666666555554444333333333
No 61
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=51.90 E-value=32 Score=27.90 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007091 479 RQLSARIEQLEQEVAELQQSLADKREQESA 508 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (618)
.+|.++|..|++|+.-++..+..|+-.-.|
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999876654
No 62
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=51.04 E-value=9.4 Score=46.11 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=86.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHH-------HHHHhHHHHHHHHH---HHHHHHHHHH
Q 007091 426 LSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALME-------MVKQDNRRQLSARI---EQLEQEVAEL 495 (618)
Q Consensus 426 ~~~~~~~~~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~---~~~~~~~~~~ 495 (618)
++....-.+..|+.-....+.+...|+++.++...|+||+|+.|-- +|+...| |||+| ++.|.|++|+
T Consensus 155 ~~~~~~q~i~~lE~el~~~r~~c~~l~~~a~~~~rr~Ee~e~ql~~a~~~na~lvEen~r--lsa~~~w~~~vE~enae~ 232 (1335)
T KOG3632|consen 155 VTKVTVQEIKNLETELNFFRTSCINLLEVAESNFRRFEEEESQLLTAPCPNALLVEENLR--LSALVSWSSPVESENAES 232 (1335)
T ss_pred cchHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhccCcchhhhhhccc--cceeecccchhhhhhhhh
Confidence 4444433467777778889999999999999999999999999853 3444433 56664 7889999999
Q ss_pred HH-HhhhHHHHHHHH-----H-HHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHH
Q 007091 496 QQ-SLADKREQESAM-----I-QVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKA 551 (618)
Q Consensus 496 ~~-~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (618)
|- ++-|-||.-.+- + -+++-.||-.++.-.+--.--|++-.+--|.++||+|.++-
T Consensus 233 rghl~~~~qeRd~~~~~~~~~~~~~l~~eq~L~~mae~a~rrqqlq~eh~qal~~l~~kqqEV 295 (1335)
T KOG3632|consen 233 RGHLCVDGQERDIVPGSYKCVEDIPLESEQNLSVMAETAHRRQQLQCEHIQALNELQVKQQEV 295 (1335)
T ss_pred hheeeccceeeccccccccccccchhhHHHHHHHHHHHhhhccchhhhhHHHhhhcccCHHHh
Confidence 84 445555544332 1 13455666666555444455678888888899999988764
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.81 E-value=1.1e+02 Score=34.63 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=34.1
Q ss_pred cCCCCcccc-ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHH
Q 007091 425 GLSVNSELE-GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELET 467 (618)
Q Consensus 425 ~~~~~~~~~-~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~ 467 (618)
+.-.+.-.| +.+|--|+..+..++-.|+.+|+.-.-+++.|-.
T Consensus 51 GiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 51 GIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556 7889999999999999999999988888887744
No 64
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.12 E-value=6.5e+02 Score=32.01 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=15.6
Q ss_pred hHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 527 RRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEK 560 (618)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (618)
+...+.+-...+.-...+...++++-..+.+++.
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555554444444443
No 65
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.02 E-value=6.5e+02 Score=32.00 Aligned_cols=92 Identities=28% Similarity=0.377 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHH--hHHH----------HHHHHHHHHHHHHHHHHHHhhhHH
Q 007091 436 DLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQ--DNRR----------QLSARIEQLEQEVAELQQSLADKR 503 (618)
Q Consensus 436 ~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 503 (618)
.+++++.-+...+-.+..+..+..-...+++..+.++=.+ +.++ .+..+.+++...+..+.+.+++..
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 750 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666665554321 1111 233555555555556655555555
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHh
Q 007091 504 EQESAMIQVLMKVEQEQRITEDAR 527 (618)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~ 527 (618)
+...-.-+.+..++.+..-.++..
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 751 EELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666665555544
No 66
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=49.12 E-value=7.2e+02 Score=32.27 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007091 545 EEKYEKAMASVAQMEKRAVMAESMLEATLQ 574 (618)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (618)
+.++++...-+.+.+.|+-.++.-+++++.
T Consensus 360 ~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~ 389 (1353)
T TIGR02680 360 ESRLEEERRRLDEEAGRLDDAERELRAARE 389 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777776666554
No 67
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.85 E-value=6.2e+02 Score=31.44 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 007091 481 LSARIEQLEQEVAELQQSLA 500 (618)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~ 500 (618)
+..++.+++.+...+++-+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~ 318 (1164)
T TIGR02169 299 LEAEIASLERSIAEKERELE 318 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 68
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.80 E-value=4.8e+02 Score=33.10 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007091 438 QEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 509 (618)
Q Consensus 438 ~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (618)
+.|..+|..|.-.+-.++ ..++.+-+...-..-.-+-.+..+.++++++|+++..|+..++.|+-+|...
T Consensus 172 ~a~~~~lqae~~~l~~~~--~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 172 QAQLTALQAESAALKALV--DELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777766553332 2222222222222223344566788999999999999999999998777665
No 69
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.73 E-value=2.6e+02 Score=29.38 Aligned_cols=58 Identities=28% Similarity=0.471 Sum_probs=40.7
Q ss_pred HHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 007091 462 AEELETALMEM--VKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (618)
Q Consensus 462 ~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
...|+..|.++ -.+..+..+.+.|.+||.|+.++|.-++.....=+.++-|=|.++.|
T Consensus 239 ~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~E 298 (312)
T PF00038_consen 239 NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAE 298 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45566666544 44566777888899999999998888877766655566655555555
No 70
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.67 E-value=2.1e+02 Score=29.39 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007091 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 520 (618)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (618)
-.+++.+.|.++++++++|.+-+.+-++-++.+.-+|.+|-.+.
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999888888877777666666665443
No 71
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.07 E-value=3.2e+02 Score=27.97 Aligned_cols=94 Identities=29% Similarity=0.321 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHH------
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYE------ 549 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 549 (618)
+.=|++=.++.+||..+..+++.+..-.++...|==.++++|+ ||++ ..+..++...|+++.--|++-.
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~--Ki~e---~~~~~~~l~ar~~~akA~~~v~~~~~~~ 159 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQ--KIAE---LRAKKEALKARKAAAKAQEKVNRSLGGG 159 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445566678888888888998888888888888777777765 4433 3466777777887777777654
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007091 550 ---KAMASVAQMEKRAVMAESMLEATLQ 574 (618)
Q Consensus 550 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (618)
.|+.+|..||.|+-..|...++--+
T Consensus 160 s~~sa~~~fer~e~kiee~ea~a~~~~e 187 (225)
T COG1842 160 SSSSAMAAFERMEEKIEEREARAEAAAE 187 (225)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6899999999999888777666543
No 72
>PRK11637 AmiB activator; Provisional
Probab=47.94 E-value=2.2e+02 Score=31.60 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHHHHhHH
Q 007091 436 DLQEQVVWLKVELCSLLEDKRS 457 (618)
Q Consensus 436 ~~~~q~~~~~~~~~~ll~e~~~ 457 (618)
++++++.-++.++-.+..+..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5777777666666555554443
No 73
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.91 E-value=2.2e+02 Score=30.73 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007091 481 LSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (618)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (618)
-...|+.|..++...+..|..|+..-..|++++
T Consensus 13 t~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 13 TEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788877777777776656666654
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.75 E-value=3.8e+02 Score=28.73 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=40.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHhH-HHhHhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKR-SAVLRAEELETALMEMVKQDNR-RQLSARIEQLEQEVAELQQSLADKREQESAMIQ 511 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~-~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (618)
+|.+.+.-.-|..|+-+|=.... -+....++|+.+=.++...+.. ....+++++|++++.+++..+.+..+|-+.
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~--- 255 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE--- 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44444444444444443332222 1333344444443333333221 223334444444444444444444433332
Q ss_pred HHHHHHHhhhhcHHHhHhhHhhH
Q 007091 512 VLMKVEQEQRITEDARRNAEQDA 534 (618)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~ 534 (618)
.+..+.+-+++-+..|.+...+.
T Consensus 256 l~~eI~e~~~~~~~~r~~t~~Ev 278 (325)
T PF08317_consen 256 LLAEIAEAEKIREECRGWTRSEV 278 (325)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH
Confidence 23334444445555555444443
No 75
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.06 E-value=1.2e+02 Score=29.08 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=33.6
Q ss_pred HHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 450 SLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 450 ~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
.|=++...-.-....|+..|..+-..--..+|...|++|++|+.+|..-|..
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444566677777777777777788888888887777665543
No 76
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=44.69 E-value=2.5e+02 Score=30.98 Aligned_cols=82 Identities=17% Similarity=0.333 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhHHHhHhHHHHHHHH----------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 444 LKVELCSLLEDKRSAVLRAEELETAL----------------------MEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 444 ~~~~~~~ll~e~~~~~~~~~~l~~~l----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
|..++.+.++|-.+..-.-+.|+.|+ +|+|+...-..|-..|.+|..-++.|++.|..
T Consensus 263 Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~ 342 (384)
T PF03148_consen 263 LEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDE 342 (384)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666655555556666665 45677777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHH
Q 007091 502 KREQESAMIQVLMKVEQEQRITED 525 (618)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~ 525 (618)
-+..-+.+....+++|.+-.+-..
T Consensus 343 a~~~l~~L~~~~~~Le~di~~K~~ 366 (384)
T PF03148_consen 343 AEASLQKLERTRLRLEEDIAVKNN 366 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765443
No 77
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=43.70 E-value=4.8 Score=44.54 Aligned_cols=108 Identities=23% Similarity=0.247 Sum_probs=73.5
Q ss_pred HHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHHHHhChhhhhhccc
Q 007091 168 LLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDY 247 (618)
Q Consensus 168 L~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LLk~~~P~L~~HL~~ 247 (618)
|.+|..+|+++||| +..+.+ ..+++...+...................+.-..|+..
T Consensus 24 l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (397)
T KOG1102|consen 24 LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQSSNERKLTELRDSPESIPDLSQSKRPGHVDS 80 (397)
T ss_pred ccCCCccccccccc--hhhhhh---------------------cccccccCCcccccccccCcccccccccccccccccc
Confidence 88899999999999 555544 2233443333333332222333344445666677777
Q ss_pred cccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 007091 248 LGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELY 300 (618)
Q Consensus 248 lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~ 300 (618)
.+ ........|..-.|..........++||.+..+|... +....-..++.+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (397)
T KOG1102|consen 81 SE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQE-LTALSSSWLKVI 131 (397)
T ss_pred cc-cccccccccccccccccccccccchhHHHHhhhhHHH-HHHHHHHhhhhc
Confidence 77 6777888999999999999999999999999999887 555444444443
No 78
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=43.49 E-value=5.7e+02 Score=29.52 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 007091 486 EQLEQEVAELQQSLAD 501 (618)
Q Consensus 486 ~~~~~~~~~~~~~~~~ 501 (618)
++++++..+|++.+.+
T Consensus 314 ~e~~~~~~~l~~~~~~ 329 (582)
T PF09731_consen 314 EEFEREREELEEKYEE 329 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 79
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.80 E-value=1.9e+02 Score=25.78 Aligned_cols=59 Identities=32% Similarity=0.459 Sum_probs=48.4
Q ss_pred HHHHHHHHHhHHHh-------------HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007091 446 VELCSLLEDKRSAV-------------LRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKRE 504 (618)
Q Consensus 446 ~~~~~ll~e~~~~~-------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (618)
.+|-+|..+.+... +..+++..+-..=.+...+.+|.+++..++.+-..|.+.+..+++
T Consensus 37 neLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 37 NELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47777777766655 567888888888888999999999999999999999888887664
No 80
>PRK11239 hypothetical protein; Provisional
Probab=39.30 E-value=41 Score=34.06 Aligned_cols=26 Identities=50% Similarity=0.569 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007091 479 RQLSARIEQLEQEVAELQQSLADKRE 504 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (618)
..|.++|..||+||++||..+..-..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999988876544
No 81
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=39.16 E-value=6.7e+02 Score=30.03 Aligned_cols=30 Identities=37% Similarity=0.567 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (618)
|-..+|.-+|-.||.+|. +++||+++||-=
T Consensus 331 ~~~~qL~~qVAsLQeev~--------sq~qEqaiLq~S 360 (739)
T PF07111_consen 331 DSVKQLRGQVASLQEEVA--------SQQQEQAILQHS 360 (739)
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 334445555555555553 456677777643
No 82
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.58 E-value=95 Score=30.21 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 007091 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 515 (618)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (618)
..+|..++++||.|+..|.+-++--+|-=.+|++++=|
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998888888899988754
No 83
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.41 E-value=3.8e+02 Score=25.99 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhHHHhHhHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007091 445 KVELCSLLEDKRSAVLRAEELETALM--EMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (618)
Q Consensus 445 ~~~~~~ll~e~~~~~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (618)
+.+.-+|..+.+...-.-...+..|. |=+-..-++.|..+|++|+.++..|...+.+-.+|
T Consensus 56 ~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 56 REDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQ 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33334444444433333333333333 33344456688889999999998888665554444
No 84
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=38.37 E-value=6.7e+02 Score=28.85 Aligned_cols=131 Identities=27% Similarity=0.236 Sum_probs=82.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHH-hH----HHHHHHHHHHHHHHHHH-----HHHHhhhHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQ-DN----RRQLSARIEQLEQEVAE-----LQQSLADKR 503 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~-~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 503 (618)
++-+++|+.-.-.+=.+.|.|.-++.=-.++|-.-|-..-.. .. .+-..-+++++++++.+ +++-|..-+
T Consensus 43 l~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~ 122 (522)
T PF05701_consen 43 LAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAR 122 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence 555556665555566677777777766677766666532211 11 12222355666666555 333333344
Q ss_pred HHHHHHH-------HHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 504 EQESAMI-------QVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVM 564 (618)
Q Consensus 504 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (618)
+|=...+ |=|-++.+|...+-|++-.|...|..---++++-.++-+....-|..|-.-...
T Consensus 123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443 456677888888899999999999988888888888888777766666544443
No 85
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.25 E-value=2.9e+02 Score=28.62 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=41.0
Q ss_pred ccCHHHHhccCCCCccccccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007091 416 AANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEV 492 (618)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (618)
+.++++|..+.+..--..+.|+.-.+..||. +|++=|.+ -+..|++..+|. .+.+.+++|.++||.++.+|
T Consensus 120 s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~-vlK~Rdqk---Q~d~E~l~E~l~--~rre~~~kLe~~ie~~~~~v 190 (240)
T cd07667 120 STALEELTEDMTEDFLPVLREYILYSESMKN-VLKKRDQV---QAEYEAKLEAVA--LRKEERPKVPTDVEKCQDRV 190 (240)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544333335555556666665 55544433 356777777773 45566666666666666666
No 86
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=37.32 E-value=3.5e+02 Score=25.39 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007091 471 EMVKQDNRRQLSARIEQLEQEVAELQ 496 (618)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (618)
+-.|.+..++|++.+.+++.|+..|.
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLe 40 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLE 40 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999998875
No 87
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.43 E-value=1.5e+02 Score=34.25 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007091 447 ELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKR 503 (618)
Q Consensus 447 ~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (618)
|+||+++-.+-++. ||| --|.+|...|+++.+.+.||+|.+-.||
T Consensus 83 e~~RI~~sVs~EL~---ele---------~krqel~seI~~~n~kiEelk~~i~~~q 127 (907)
T KOG2264|consen 83 EQKRILASVSLELT---ELE---------VKRQELNSEIEEINTKIEELKRLIPQKQ 127 (907)
T ss_pred HHHHHHHHHHHHHH---HHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHhH
Confidence 77777765543322 222 2467788889999999999999887665
No 88
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.40 E-value=7.1e+02 Score=28.28 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhH
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARR 528 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (618)
+.+..|.+++++|+.++.++-.-|..-.++=..+-.-.-.++.|.+..+..+.
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~ 410 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTD 410 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766655444444443333333333334444444344333
No 89
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.11 E-value=1.6e+02 Score=30.66 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHh--hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 484 RIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQ--DARAQRYAVNVLEEKYEKAMASVAQMEK 560 (618)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (618)
++.+|+.||+.|+..|..|.. |-+|-+.+||+------.| =--.++--++-||.|-++...++++|++
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq---------~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQ---------LILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHH---------HHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677777777777776542 2346666666532111111 1234556678899999999999999984
No 90
>PTZ00121 MAEBL; Provisional
Probab=35.06 E-value=1.2e+03 Score=30.74 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=10.2
Q ss_pred hcHHHhHhhHhhHHHhHHHHH
Q 007091 522 ITEDARRNAEQDARAQRYAVN 542 (618)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~ 542 (618)
+++.||+.|++-+..+|-|.+
T Consensus 1262 ~a~~A~r~aa~k~Ee~RrAee 1282 (2084)
T PTZ00121 1262 MAHFARRQAAIKAEEARKADE 1282 (2084)
T ss_pred HHHHHHHhHhhhhHHHHHHHH
Confidence 344444555544555555544
No 91
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=34.89 E-value=49 Score=32.15 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESA 508 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (618)
.-|++|...+-++|.|+..|||+|+-|+-+=.-
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~e 61 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAE 61 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345667777788899999999999998766443
No 92
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.64 E-value=3.3e+02 Score=24.10 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=55.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHH-------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELET-------------ALMEMVKQDNRRQLSARIEQLEQEVAELQQSLA 500 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~-------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (618)
..++++|..-|...+-.|--+.+....--+||+. +|++.=..+....|..+++.++.++..+...+.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~ 87 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEE 87 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777766666666666666663 455666778889999999999999999998888
Q ss_pred hHHHHHHH
Q 007091 501 DKREQESA 508 (618)
Q Consensus 501 ~~~~~~~~ 508 (618)
+.+.+=..
T Consensus 88 ~l~~~~~e 95 (105)
T cd00632 88 DLQEKLKE 95 (105)
T ss_pred HHHHHHHH
Confidence 88776443
No 93
>PRK02224 chromosome segregation protein; Provisional
Probab=34.09 E-value=9.3e+02 Score=29.24 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007091 437 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKV 516 (618)
Q Consensus 437 ~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (618)
++++..-+..++-.+-+......-..+.|...+... .+.+..|+.+.++|+....+|++.++..+.+-..+....-.+
T Consensus 270 ~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~--~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~ 347 (880)
T PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLD--DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESL 347 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007091 517 EQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATL 573 (618)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (618)
+....--++.....+.+++.-.=...-+..+-+.+-..+.++++..-=.+.-|+.+.
T Consensus 348 ~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~ 404 (880)
T PRK02224 348 REDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
No 94
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.52 E-value=5.5e+02 Score=26.36 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 007091 461 RAEELETALMEMV 473 (618)
Q Consensus 461 ~~~~l~~~l~~~~ 473 (618)
..+.|...+.+.+
T Consensus 35 ~~~~l~~~i~~~l 47 (302)
T PF10186_consen 35 ENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 95
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.35 E-value=6.5e+02 Score=27.17 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007091 549 EKAMASVAQMEKRAVMAESMLEA 571 (618)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~ 571 (618)
.++-+.+++++.+.--++.-|+.
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444443
No 96
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.28 E-value=2.5e+02 Score=24.23 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 471 EMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
+.|-.+--|+.-.+||.||+|-.++.+-..|
T Consensus 9 ~tva~~QLrafIerIERlEeEk~~i~~dikd 39 (85)
T COG3750 9 QTVAAGQLRAFIERIERLEEEKKTIADDIKD 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566667888888888777654444
No 97
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=32.63 E-value=32 Score=26.41 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 007091 479 RQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
++|..+|-.||.||..||+.=.|
T Consensus 14 e~l~vrv~eLEeEV~~LrKINrd 36 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKINRD 36 (48)
T ss_pred chheeeHHHHHHHHHHHHHHhHH
Confidence 57889999999999999997555
No 98
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.62 E-value=8.3e+02 Score=28.20 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=4.8
Q ss_pred CHHHHhccCC
Q 007091 418 NLDEMLSGLS 427 (618)
Q Consensus 418 ~~~~~~~~~~ 427 (618)
.+..+|.++.
T Consensus 227 el~~~~~~l~ 236 (582)
T PF09731_consen 227 ELVSIFNDLI 236 (582)
T ss_pred HHHHhccchh
Confidence 3444555553
No 99
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=32.14 E-value=17 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.2
Q ss_pred HHHHHHHHhHHHhHhHHHHHHHHHHH
Q 007091 447 ELCSLLEDKRSAVLRAEELETALMEM 472 (618)
Q Consensus 447 ~~~~ll~e~~~~~~~~~~l~~~l~~~ 472 (618)
++|+..+.+.++.+..+||...+..|
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 78999999999999999999887654
No 100
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.85 E-value=1e+03 Score=30.34 Aligned_cols=124 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEM------VKQDNRRQLSARIEQLEQEVAELQQSLADKREQES 507 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (618)
+.++++|++-|+.|+-.+=++... ..+-++|-+.+++| +..|--+++-.++++|++++..+.-.+..-.--.+
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~ 938 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHH
Q ss_pred HHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007091 508 AMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQM 558 (618)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (618)
-.=--+-+.|.+-+-+|+---.-.++.---+-.+--++..|.++.+++-+.
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~ 989 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEI 989 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
No 101
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.62 E-value=7.5e+02 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHhhcC--C---ChhhHHHHHHHHhc
Q 007091 71 EPYFPWKEELESLVHGG--V---PKDLRGELWQAFVG 102 (618)
Q Consensus 71 ~~~~~~~ekLk~lir~G--I---P~~lR~~VW~~LLG 102 (618)
.+.+.++.+|+..+..| + +..+|..|-..|+|
T Consensus 139 ~~~plt~~~l~~~l~~~~~~~~~~~~Yr~~v~~~lfG 175 (1353)
T TIGR02680 139 AGIPLTRDRLKEALGDGGEVFDTATDYRRAVDEELFG 175 (1353)
T ss_pred CCccCCHHHHHHHhCCCCeEEecHHHHHHHHHHHhcC
Confidence 46677888899877543 3 34488888888887
No 102
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=31.18 E-value=2.2e+02 Score=26.10 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=20.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007091 472 MVKQDNRRQLSARIEQLEQEVAELQQ 497 (618)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (618)
++.++--..|++||.+||+.+.+|+.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566667899999999999998864
No 103
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=30.19 E-value=5.7e+02 Score=25.56 Aligned_cols=85 Identities=28% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHH
Q 007091 478 RRQLSA---RIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMAS 554 (618)
Q Consensus 478 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (618)
+|.||| +|.+|..++.+++.-+.+-.--=.++=++-.|-|-...=.|+....--|--+.+.=-+.+|++.+-+....
T Consensus 4 ~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~ 83 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQ 83 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 007091 555 VAQMEKRA 562 (618)
Q Consensus 555 ~~~~~~~~ 562 (618)
.-.+|++.
T Consensus 84 ~r~~~~kl 91 (194)
T PF15619_consen 84 ERELERKL 91 (194)
T ss_pred HHHHHHHH
No 104
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=30.08 E-value=2.2e+02 Score=24.70 Aligned_cols=62 Identities=26% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007091 441 VVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQD---------NRRQLSARIEQLEQEVAELQQSLADK 502 (618)
Q Consensus 441 ~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (618)
-.-|..|..+|=.+.....--...|+.||+-....- +...|=+.|..||.||.-|.+-+.+-
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666677777788888888754433 56677777788888877777666553
No 105
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.35 E-value=5e+02 Score=31.05 Aligned_cols=87 Identities=29% Similarity=0.283 Sum_probs=0.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007091 430 SELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 509 (618)
Q Consensus 430 ~~~~~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (618)
..+.+|...-|...|..|--+|=...-++.-|+-+++..+ ...|.--.+|..++-+||+|..+++. +-+|+.-|
T Consensus 695 ~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~--~~~qeE~~~l~~r~~~le~e~r~~k~----~~~q~lq~ 768 (961)
T KOG4673|consen 695 LNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEY--LAAQEEADTLEGRANQLEVEIRELKR----KHKQELQE 768 (961)
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhH
Q ss_pred HHHHHHHHHhhhhcH
Q 007091 510 IQVLMKVEQEQRITE 524 (618)
Q Consensus 510 ~~~~~~~~~~~~~~~ 524 (618)
|||.||+++|-.|
T Consensus 769 --~ll~ve~~~k~~e 781 (961)
T KOG4673|consen 769 --VLLHVELIQKDLE 781 (961)
T ss_pred --HHHHHHHHHHHhh
No 106
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.82 E-value=8.4e+02 Score=29.71 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=19.4
Q ss_pred HHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHH
Q 007091 515 KVEQEQRITEDARRNAEQDARAQRYAVNVLEEKY 548 (618)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (618)
+.|.|.+..-----++|.+-+.-||-++|+++..
T Consensus 131 ~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 131 QAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333456777777777777776644
No 107
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.75 E-value=1.5e+03 Score=29.92 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhH----hhHHHhHHHHHHHHHHHHHHH
Q 007091 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAE----QDARAQRYAVNVLEEKYEKAM 552 (618)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 552 (618)
....+.++++.+++++.+++.-+++.+.+-...=+-+...++...-.+.|+-.-- -|...+. -.+-++++-++..
T Consensus 377 eleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~-~LenF~aklee~e 455 (1486)
T PRK04863 377 QQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED-WLEEFQAKEQEAT 455 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHHH
Confidence 3445567777777777777777776554444444444455555444444443321 0111111 1223455556666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007091 553 ASVAQMEKRAVMAESMLEA 571 (618)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~ 571 (618)
..+..+|.+..+++.-++.
T Consensus 456 ~qL~elE~kL~~lea~leq 474 (1486)
T PRK04863 456 EELLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666643
No 108
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.45 E-value=9.8e+02 Score=27.75 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=19.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 533 DARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESML 569 (618)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (618)
..+.+.=+...+++.|++....+.++++.-+....++
T Consensus 370 ~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l 406 (569)
T PRK04778 370 RIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEML 406 (569)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666666666666666655544444333
No 109
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.34 E-value=7.6e+02 Score=30.60 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhhhhcHHHhHhh
Q 007091 452 LEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLA-DKREQESAMIQVLMKVEQEQRITEDARRNA 530 (618)
Q Consensus 452 l~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (618)
|.|.++|.|-|||+.+.| -|-.-.|..||-+||.+|.+|-.+=. +.|=+|..==+++=-+|+=-+..---+..-
T Consensus 436 lkEQVDAAlGAE~MV~qL-----tdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~ 510 (1243)
T KOG0971|consen 436 LKEQVDAALGAEEMVEQL-----TDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQ 510 (1243)
T ss_pred HHHHHHHhhcHHHHHHHH-----HhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HhhHHHhHHHHHHHH--HHHHHHHHHH
Q 007091 531 EQDARAQRYAVNVLE--EKYEKAMASV 555 (618)
Q Consensus 531 ~~~~~~~~~~~~~~~--~~~~~~~~~~ 555 (618)
-+--|||..++..=| -||.+.|+-|
T Consensus 511 ~r~~aaqet~yDrdqTI~KfRelva~L 537 (1243)
T KOG0971|consen 511 KRVEAAQETVYDRDQTIKKFRELVAHL 537 (1243)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
No 110
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.31 E-value=1e+03 Score=29.00 Aligned_cols=104 Identities=26% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHHhHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHh---hHhhH
Q 007091 463 EELETALME--MVKQDNRRQL---SARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRN---AEQDA 534 (618)
Q Consensus 463 ~~l~~~l~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 534 (618)
+||-.-|-| ||-.+..+++ .|++|+-|.||.+||--|+|-|.-=-+-----+.--|--.--|.||.. +|--|
T Consensus 358 ~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~ 437 (1480)
T COG3096 358 EELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTA 437 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccch
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 535 RAQRYAVNVLEEKYEKAMASVAQMEKRAVMAE 566 (618)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (618)
.-----..-++-+-|.+...|-++|.+.-|++
T Consensus 438 ~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~ 469 (1480)
T COG3096 438 DSAEEWLETFQAKEEEATEKLLSLEQKMSMAQ 469 (1480)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhccHHH
No 111
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=28.17 E-value=3.7e+02 Score=31.87 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 007091 436 DLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 515 (618)
Q Consensus 436 ~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (618)
..+.|+.-+..++-++..+.-........+... -++.-+++++|+.+||.++++.+... .+=+.++|.|.|
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~-----~~~~~~~~~~~l~~le~~l~~~~~~~----~~L~~~~~~l~~ 413 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQ-----AQASVHQLDSQFAQLDGKLADAQSAQ----QALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 455567777778887777644433333333222 34566888999999999888865432 233334465544
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=27.41 E-value=5.7e+02 Score=24.71 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=30.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007091 432 LEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADK 502 (618)
Q Consensus 432 ~~~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (618)
.++.+.+.+...+..|+-.+=+...+-.-..+.+........ ...+...+++..++..+.++.+-+.|-
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR--ELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544333333333333333333222 333444455555555554444444433
No 113
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.03 E-value=6e+02 Score=29.31 Aligned_cols=74 Identities=20% Similarity=0.338 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHh---HHHHHHHHHHHHHHHHH
Q 007091 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQ---RYAVNVLEEKYEKAMAS 554 (618)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 554 (618)
++.+-|+|-.|-.||| ++.+..-.-=..-+-+..+-+|+--|..|.||..+|.-.+.- |++ -||+.||+-+.+
T Consensus 169 ~arm~aqi~~l~eEmS--~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~--~lq~l~Ee~l~a 244 (531)
T PF15450_consen 169 VARMQAQITKLGEEMS--LRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQ--KLQELTEERLRA 244 (531)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 5667799999999998 456655555566677788899999999999999999876432 332 366666666655
Q ss_pred H
Q 007091 555 V 555 (618)
Q Consensus 555 ~ 555 (618)
|
T Consensus 245 l 245 (531)
T PF15450_consen 245 L 245 (531)
T ss_pred H
Confidence 5
No 114
>PRK15396 murein lipoprotein; Provisional
Probab=27.01 E-value=1.9e+02 Score=24.76 Aligned_cols=16 Identities=38% Similarity=0.628 Sum_probs=8.7
Q ss_pred HHHhHhhHhhHHHhHH
Q 007091 524 EDARRNAEQDARAQRY 539 (618)
Q Consensus 524 ~~~~~~~~~~~~~~~~ 539 (618)
|-+|-+---|.-++.|
T Consensus 61 eA~raN~RlDn~~~sy 76 (78)
T PRK15396 61 DAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4455555556555555
No 115
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.68 E-value=8.3e+02 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007091 552 MASVAQMEKRAVMAESMLEATL 573 (618)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~ 573 (618)
.+.+.+++..+-+|+.+++..+
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l 298 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAAL 298 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665443
No 116
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=26.39 E-value=6.3e+02 Score=29.38 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhH-----------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVL-----------RAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADK 502 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (618)
...|...+.-++.|+|..++++..... +-++|...+.++.+.+.-..+..++.....++..|++-|+..
T Consensus 16 I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~ 95 (593)
T PF06248_consen 16 ISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEEN 95 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777788877777665433 334444445445544445556666666777777777666554
Q ss_pred H
Q 007091 503 R 503 (618)
Q Consensus 503 ~ 503 (618)
+
T Consensus 96 ~ 96 (593)
T PF06248_consen 96 E 96 (593)
T ss_pred H
Confidence 3
No 117
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.33 E-value=6.6e+02 Score=25.04 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 007091 476 DNRRQLSARIEQLEQEVAELQQS 498 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~ 498 (618)
.....+..++-.||+.+.+|++.
T Consensus 124 ~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 124 AELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665543
No 118
>PRK11281 hypothetical protein; Provisional
Probab=26.17 E-value=1.5e+03 Score=28.99 Aligned_cols=71 Identities=27% Similarity=0.283 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007091 437 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 509 (618)
Q Consensus 437 ~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (618)
.+.|..+|..|+-.|--++ ...+.+-....-..-..+-.|..+.++++++|+++..|+..++.|+-++...
T Consensus 190 ~~~~~~~l~ae~~~l~~~~--~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~ 260 (1113)
T PRK11281 190 RPSQRVLLQAEQALLNAQN--DLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEK 260 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888887665442 1222222211112223345667789999999999999999999998777665
No 119
>smart00150 SPEC Spectrin repeats.
Probab=26.13 E-value=3.7e+02 Score=22.03 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=35.2
Q ss_pred HHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007091 453 EDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (618)
Q Consensus 453 ~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (618)
+.....+-....+...|.... ......+..+++.|...-..|++.+.+++.+
T Consensus 48 ~~~~~~v~~~~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 99 (101)
T smart00150 48 EAHEERVEALNELGEQLIEEG-HPDAEEIEERLEELNERWEELKELAEERRQK 99 (101)
T ss_pred HHhHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555543 3455788999999999999999988887653
No 120
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=26.08 E-value=1.8e+03 Score=30.01 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 541 VNVLEEKYEKAMASVAQMEKRAVMAESM 568 (618)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (618)
.+-|+.+.+.--+.++++.|-+...++.
T Consensus 1078 l~~l~~k~e~e~~~~~~l~k~i~eL~~~ 1105 (1930)
T KOG0161|consen 1078 LSQLQSKLEDEQAEVAQLQKQIKELEAR 1105 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445556666566666666665555553
No 121
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.06 E-value=1.6e+02 Score=31.30 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007091 462 AEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKR 503 (618)
Q Consensus 462 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (618)
-|+|+.++..+ .+-.++|.-++..||.|+..|||++-.++
T Consensus 250 ~E~l~ge~~~L--e~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 250 KEALLGELEGL--EKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 34567899999999999999999987654
No 122
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=25.97 E-value=2.1e+02 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007091 474 KQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (618)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (618)
-+...++|..++..|.+|+..|+.-|.-..+..+-+|.+|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566788999999999999999998887777776666554
No 123
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=25.03 E-value=1.9e+03 Score=29.86 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007091 479 RQLSARIEQLEQEVAELQQSLA 500 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~ 500 (618)
..|.....+||+.++++...|.
T Consensus 1009 ~~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 1009 KSLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666555554
No 124
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.83 E-value=3e+02 Score=32.61 Aligned_cols=41 Identities=32% Similarity=0.513 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHH
Q 007091 478 RRQLSARIEQLEQEVAELQQSLAD----KREQESAMIQVLMKVEQ 518 (618)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 518 (618)
|++|-++||+|..++.++++-+.. --.||.++-|++..+.+
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~ 125 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISD 125 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888876643 34567777777766654
No 125
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.81 E-value=1.1e+03 Score=26.89 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 540 AVNVLEEKYEKAMASVAQMEKRAVMAES 567 (618)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (618)
....+.++++++-...+++++...+.+.
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~~~ 407 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777665544
No 126
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=24.44 E-value=2e+02 Score=25.31 Aligned_cols=46 Identities=35% Similarity=0.458 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHH--HHHHHHHHHhhhh
Q 007091 477 NRRQLSARIEQLEQEVAELQQSLA---DKREQESAM--IQVLMKVEQEQRI 522 (618)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~ 522 (618)
-|+||+.|-|...--+.+.|-.|. +--+|=.-| ||.|+.||||-++
T Consensus 38 wreqL~qkfe~IrwlI~e~r~~l~~tensf~qItfmqaLqlLlEve~eirt 88 (94)
T PF00601_consen 38 WREQLGQKFEEIRWLIEEHRHRLKITENSFEQITFMQALQLLLEVEQEIRT 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888887777777776553 445665544 8999999998654
No 127
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.24 E-value=7.7e+02 Score=25.13 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007091 551 AMASVAQMEKRAVMAESMLEAT 572 (618)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~ 572 (618)
-.+++.+-|||+|-.|-.+.-.
T Consensus 114 KLksi~~A~krpvsSEelIKyA 135 (272)
T KOG4552|consen 114 KLKSIKEAEKRPVSSEELIKYA 135 (272)
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 4567778889999998876533
No 128
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=24.18 E-value=4.5e+02 Score=29.70 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHh---------hHHHhHHHHHHHHHHHHHH
Q 007091 491 EVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQ---------DARAQRYAVNVLEEKYEKA 551 (618)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 551 (618)
++.||-.+..=| +-|+-|+| .-+.|||+-||. +-..+-||...+.-...+|
T Consensus 351 ~~eeLESIVRiK-qAEA~MFQ---------~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~ea 410 (446)
T PF07227_consen 351 QIEELESIVRIK-QAEAKMFQ---------LKADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLNEA 410 (446)
T ss_pred chHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Confidence 444444444433 46889998 347889988885 3344556655554444444
No 129
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.13 E-value=91 Score=31.28 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007091 473 VKQDNRRQLSARIEQLEQEVAELQQSLADKRE 504 (618)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (618)
..+.|-.-+..-|+-+|+.|..|..-|+.|++
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~ 188 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLSSKKQ 188 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778899999999999999988875
No 130
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=23.94 E-value=1.8e+02 Score=32.05 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=48.7
Q ss_pred HHH----HHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 007091 442 VWL----KVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSL 499 (618)
Q Consensus 442 ~~~----~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (618)
.|. |.=++-.+=..|=+-.+.+|...+|-..++. .-.--.+|+|-||+||-+|||-|
T Consensus 15 ~wyl~tsKlAlAlAIIrsKPpg~s~ReytE~La~~l~~-qd~~WK~kae~LE~EvLqlrQeL 75 (375)
T PF13971_consen 15 SWYLKTSKLALALAIIRSKPPGKSSREYTEHLAKRLSE-QDESWKSKAEALEAEVLQLRQEL 75 (375)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 677 8888888888888899999999999998876 33445689999999999999987
No 131
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.82 E-value=1.4e+02 Score=28.09 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007091 446 VELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQ 497 (618)
Q Consensus 446 ~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (618)
.++...+|+.+...|+-=. +.....-..|++||.+|+++|..|..
T Consensus 86 dklE~~fd~rV~~aL~rLg-------vPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 86 DKLEQAFDERVARALNRLG-------VPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666677776666655322 23455567899999999999998864
No 132
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.68 E-value=4.1e+02 Score=31.03 Aligned_cols=45 Identities=33% Similarity=0.416 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHh
Q 007091 480 QLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQ 537 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (618)
+|.+.-|+||+|..+-++- .=.|.|+|+|.-|+|++.-|.=.|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (567)
T PLN03086 4 ELRRAREKLEREQRERKQR-------------AKLKLERERKAKEEAAKQREAIEAAQ 48 (567)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776554433 33567778888776665555444444
No 133
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.43 E-value=6.5e+02 Score=24.57 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007091 481 LSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~ 501 (618)
...+...++.|+.+|++-|..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHH
Confidence 444555566666666666555
No 134
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=23.38 E-value=1.2e+03 Score=27.01 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=76.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHH----------HHHHHHHHHHH---HHHHHHHH
Q 007091 431 ELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR----------RQLSARIEQLE---QEVAELQQ 497 (618)
Q Consensus 431 ~~~~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~ 497 (618)
+-.+|++++-...|..+-|.|+- ..+.-++=|..+.-||-+..| +.|+.|+++|- .|.+.|--
T Consensus 165 ~ekLk~~~een~~lr~k~~llk~----Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 165 QEKLKPLEEENTQLRSKAMLLKT----ETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HhhcCChHHHHHHHHHHHHHHHh----hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488888888888888887754 467788889999988877655 23455655554 35556666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhhhc--HHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 498 SLADKREQESAMIQVLMKVEQEQRIT--EDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEK 560 (618)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (618)
.|.|+|+-+.+ +|||-|.... -.+.-.-+|+-|. -+.+|+||-+.|+-+++-|.
T Consensus 241 ql~d~qkk~k~-----~~~Ekeel~~~Lq~~~da~~ql~aE----~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 241 QLVDLQKKIKY-----LRHEKEELDEHLQAYKDAQRQLTAE----LEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHhhHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 77888887765 3556553321 1111122333333 35799999999988877654
No 135
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.34 E-value=9.4e+02 Score=25.78 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007091 479 RQLSARIEQLEQEVAELQQSLADKRE 504 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (618)
.++..+++.|++|..++.+-|..-+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~ 71 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEK 71 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 136
>PF13514 AAA_27: AAA domain
Probab=23.18 E-value=1.2e+03 Score=29.32 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=4.7
Q ss_pred hHHHHHHH
Q 007091 92 LRGELWQA 99 (618)
Q Consensus 92 lR~~VW~~ 99 (618)
.|-..|..
T Consensus 510 ~Rd~~W~~ 517 (1111)
T PF13514_consen 510 RRDAAWQL 517 (1111)
T ss_pred HHHHHhcc
Confidence 45556666
No 137
>smart00338 BRLZ basic region leucin zipper.
Probab=22.53 E-value=3.1e+02 Score=21.96 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007091 480 QLSARIEQLEQEVAELQQS 498 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~ 498 (618)
.|.++|.+|+.|+..|++.
T Consensus 44 ~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 44 RLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 138
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=22.53 E-value=9.6e+02 Score=25.62 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007091 461 RAEELETALMEMVKQDNRRQLSARIEQLE 489 (618)
Q Consensus 461 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 489 (618)
=.+-||.||||+....--..|.++-+..|
T Consensus 138 VgKtlEQAl~EV~EEeEL~~lr~~q~~fe 166 (291)
T PF06098_consen 138 VGKTLEQALMEVMEEEELAALRRQQRAFE 166 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999887665555555544443
No 139
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=21.96 E-value=2.9e+02 Score=30.20 Aligned_cols=63 Identities=32% Similarity=0.362 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHHHHHH--HHHhHHHhHhH--HH----HHHHH-------HHHHHHhHHHHH---HHHHHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSL--LEDKRSAVLRA--EE----LETAL-------MEMVKQDNRRQL---SARIEQLEQEVAEL 495 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~l--l~e~~~~~~~~--~~----l~~~l-------~~~~~~~~~~~~---~~~~~~~~~~~~~~ 495 (618)
-||..+|+.||..||..| +||++.+.=.+ +| |.+-| -|++.+|-|..+ +|++-=|+==.|||
T Consensus 37 spdf~~~i~wl~~Elr~L~k~eE~V~q~~~~~~~eF~~elS~lL~El~CPy~eLt~Gdi~~Rf~s~~a~~lLlsyL~SEl 116 (465)
T KOG3973|consen 37 SPDFANQIIWLCAELRELYKIEEYVRQPNDHNLLEFLYELSTLLLELECPYEELTCGDIRTRFQSSSAKKLLLSYLDSEL 116 (465)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCchHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998766 67887774222 22 22223 356778877654 35554444344444
Q ss_pred H
Q 007091 496 Q 496 (618)
Q Consensus 496 ~ 496 (618)
.
T Consensus 117 ~ 117 (465)
T KOG3973|consen 117 K 117 (465)
T ss_pred H
Confidence 3
No 140
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=21.78 E-value=2.4e+02 Score=30.40 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007091 540 AVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYE 576 (618)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (618)
....+.+.+++|...+..+++...-++.....+++|=
T Consensus 310 f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yf 346 (370)
T PF02181_consen 310 FKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYF 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999997
No 141
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=21.51 E-value=9.2e+02 Score=25.95 Aligned_cols=8 Identities=0% Similarity=0.464 Sum_probs=4.1
Q ss_pred CCCCcccc
Q 007091 426 LSVNSELE 433 (618)
Q Consensus 426 ~~~~~~~~ 433 (618)
+.+|..+.
T Consensus 77 v~~G~~V~ 84 (370)
T PRK11578 77 VAIGDKVK 84 (370)
T ss_pred cCCCCEEc
Confidence 44555554
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.42 E-value=5.1e+02 Score=31.18 Aligned_cols=63 Identities=27% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHhH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHH
Q 007091 472 MVKQDN-RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEK 550 (618)
Q Consensus 472 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (618)
+.+++. |.++..+|..|.++...-.+-|.+-++ +..-|+ -.|+.|.||||+
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e-~~~~l~---------------------------~~ae~LaeR~e~ 604 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQE-ERKSLR---------------------------ESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 007091 551 AMASVAQMEKRA 562 (618)
Q Consensus 551 ~~~~~~~~~~~~ 562 (618)
|..-=..+++|+
T Consensus 605 a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 605 AKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHH
No 143
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=3.9e+02 Score=29.14 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 007091 481 LSARIEQLEQEVAELQ 496 (618)
Q Consensus 481 ~~~~~~~~~~~~~~~~ 496 (618)
|.|-+|.|||++..|+
T Consensus 251 L~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 251 LVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.24 E-value=1e+03 Score=25.53 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 007091 555 VAQMEKRAVMAESMLE 570 (618)
Q Consensus 555 ~~~~~~~~~~~~~~~~ 570 (618)
+++++...--++.-++
T Consensus 248 l~~~~~~l~~~~~~l~ 263 (423)
T TIGR01843 248 LTEAQARLAELRERLN 263 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 145
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=21.20 E-value=4.5e+02 Score=28.10 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHH
Q 007091 504 EQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEK 547 (618)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (618)
|-|.-+.|-..+.+++..+.+.. .--+-||+|.+.+++.-
T Consensus 189 EkerR~~q~~~~~~~~~~~~~Ki----~Ar~~a~~yl~~l~~~v 228 (291)
T PF06098_consen 189 EKERRIKQQKERLEKEKELREKI----AARAFAQQYLSDLVPSV 228 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34445555555555544333221 11123455665555543
No 146
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.17 E-value=2.7e+02 Score=26.67 Aligned_cols=42 Identities=36% Similarity=0.420 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHH
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASV 555 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (618)
-+-+||.+=.+|++|||.-|+..|+ |.+.+|-||+++.++|
T Consensus 13 LsleQL~~lk~q~dqEl~~lq~Sl~---------------------------------------~L~~aq~k~~~~~~al 53 (153)
T KOG3048|consen 13 LSLEQLGALKKQFDQELNFLQDSLN---------------------------------------ALKGAQTKYEESIAAL 53 (153)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHHH
Confidence 4567899999999999998888775 3567889999999887
Q ss_pred H
Q 007091 556 A 556 (618)
Q Consensus 556 ~ 556 (618)
.
T Consensus 54 n 54 (153)
T KOG3048|consen 54 N 54 (153)
T ss_pred h
Confidence 5
No 147
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=20.75 E-value=5e+02 Score=25.02 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q 007091 477 NRRQLSARIE 486 (618)
Q Consensus 477 ~~~~~~~~~~ 486 (618)
+|.+++++|.
T Consensus 117 ~R~~i~~~i~ 126 (196)
T cd03401 117 QREEVSALIR 126 (196)
T ss_pred hHHHHHHHHH
Confidence 5777777765
No 148
>PRK03918 chromosome segregation protein; Provisional
Probab=20.71 E-value=1.5e+03 Score=27.28 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEM---VKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMI 510 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (618)
.+.+..++.-+..++-.+-++...-.-+-++|+..+-++ +..+.-..+.++++.++.++++++..+...+.+-...-
T Consensus 614 l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~ 693 (880)
T PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 007091 511 QVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQ 557 (618)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (618)
+-+-.++.+.+--+.+....+.-.++-...-. +.+.|..+.+.+.+
T Consensus 694 ~~i~~~~~~~~~l~~~~~~~~~l~~~~~~l~~-lr~~~~~~~~~l~~ 739 (880)
T PRK03918 694 KTLEKLKEELEEREKAKKELEKLEKALERVEE-LREKVKKYKALLKE 739 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
No 149
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.54 E-value=2e+02 Score=32.81 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHh
Q 007091 460 LRAEELETALMEMVKQDNR------RQLSARIEQLEQEVAELQQSL 499 (618)
Q Consensus 460 ~~~~~l~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 499 (618)
.+++|||..|-.+ ++++. ..+++||+.||.|++.|+.-+
T Consensus 76 ~kasELEKqLaaL-rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEI-RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
No 150
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.22 E-value=1.7e+03 Score=27.59 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=17.8
Q ss_pred HHHhhccCCHHHHHHHHHHhhHH
Q 007091 334 ACMGYLTVTEARLQELREKHRPA 356 (618)
Q Consensus 334 A~~~~~~i~~~~L~~LR~k~~~~ 356 (618)
-+..+..++++.++-+|..|...
T Consensus 209 lfkLHs~vp~dtLeghRdRf~~q 231 (980)
T KOG0980|consen 209 LFKLHSQVPPDTLEGHRDRFHTQ 231 (980)
T ss_pred HHHHHcCCCHHHhhhHHHHHHHH
Confidence 34456789999999999888754
No 151
>smart00338 BRLZ basic region leucin zipper.
Probab=20.06 E-value=3.1e+02 Score=21.98 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007091 474 KQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 509 (618)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (618)
+..-...|..+|+.|+++.++|+.-++.-+.+=..+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888887776655443333
No 152
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.05 E-value=1.8e+03 Score=27.90 Aligned_cols=124 Identities=22% Similarity=0.272 Sum_probs=77.4
Q ss_pred ccchHHHHHHHHHHHH-HHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELC-SLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQV 512 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~-~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (618)
+.++.+++..|+.+++ ..+.++...+...++...- +|+---.|..+++.....+.++|+-+++++.|.+...
T Consensus 257 ~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~-----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~-- 329 (1074)
T KOG0250|consen 257 LEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKK-----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELK-- 329 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--
Confidence 5566777778888876 4556666655555554332 2344457999999999999999999999999876532
Q ss_pred HHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 007091 513 LMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAM-------ASVAQMEKRAVMAESML 569 (618)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 569 (618)
-|++ +...=--.|-+|.-+-|-.++-++++|-.+- ..+..|||...=++-++
T Consensus 330 ---~e~~--~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 330 ---DEVD--AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred ---Hhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1111111233455555666666666665443 34556666666665555
No 153
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=20.04 E-value=55 Score=26.03 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=34.5
Q ss_pred HHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCC
Q 007091 230 FEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILP 269 (618)
Q Consensus 230 f~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp 269 (618)
|..+--++.|+.-..|++.||+.++-.++-|++||.++..
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 5666778899999999999999999999999999987653
Done!