Query 007091
Match_columns 618
No_of_seqs 317 out of 1762
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:56:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 1.3E-49 4.6E-54 420.7 21.0 281 76-367 37-330 (334)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.4E-49 8.3E-54 414.1 21.3 259 78-356 24-291 (310)
3 3qye_A TBC1 domain family memb 100.0 1.7E-48 6E-53 411.0 23.9 262 74-355 46-322 (331)
4 2qfz_A TBC1 domain family memb 100.0 2.7E-46 9.3E-51 396.5 20.8 255 75-338 38-333 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 2.3E-45 8E-50 396.8 23.6 252 75-336 21-377 (396)
6 4hl4_A TBC1 domain family memb 100.0 5.9E-46 2E-50 385.7 16.5 251 74-343 31-291 (292)
7 3qwl_A TBC1 domain family memb 100.0 6.2E-35 2.1E-39 303.4 13.1 228 70-337 33-282 (294)
8 1pd3_A Nonstructural protein N 84.6 1.9 6.5E-05 32.7 5.4 46 476-521 6-56 (58)
9 3vkg_A Dynein heavy chain, cyt 83.3 24 0.00082 47.1 18.5 62 447-514 1903-1965(3245)
10 3vkg_A Dynein heavy chain, cyt 78.0 52 0.0018 44.1 18.9 24 541-564 2044-2067(3245)
11 1hjb_A Ccaat/enhancer binding 75.9 5.7 0.0002 33.4 6.3 43 461-505 37-79 (87)
12 1c1g_A Tropomyosin; contractIl 72.7 64 0.0022 30.3 20.1 66 438-505 5-70 (284)
13 3oja_B Anopheles plasmodium-re 71.1 34 0.0012 37.5 13.1 28 537-564 528-555 (597)
14 1x79_B RAB GTPase binding effe 70.8 54 0.0019 28.7 12.7 102 440-542 7-110 (112)
15 1gu4_A CAAT/enhancer binding p 65.1 8.7 0.0003 31.7 4.9 39 461-501 37-75 (78)
16 3oja_B Anopheles plasmodium-re 60.5 1.2E+02 0.004 33.1 14.8 14 546-559 565-578 (597)
17 2dfs_A Myosin-5A; myosin-V, in 54.6 62 0.0021 38.9 11.8 19 85-103 314-332 (1080)
18 1i84_S Smooth muscle myosin he 53.3 24 0.00082 42.8 8.1 18 86-103 341-358 (1184)
19 1ci6_A Transcription factor AT 53.2 32 0.0011 26.9 6.2 38 462-501 25-62 (63)
20 1kd8_A GABH AIV, GCN4 acid bas 52.8 19 0.00065 25.1 4.0 17 480-496 5-21 (36)
21 1i84_S Smooth muscle myosin he 50.3 31 0.0011 41.8 8.4 21 481-501 918-938 (1184)
22 1t2k_D Cyclic-AMP-dependent tr 47.7 81 0.0028 24.2 7.7 21 479-499 39-59 (61)
23 3iox_A AGI/II, PA; alpha helix 44.9 1.3E+02 0.0044 32.8 11.2 66 476-551 2-67 (497)
24 2dfs_A Myosin-5A; myosin-V, in 44.9 2.1E+02 0.0073 34.3 14.3 10 418-427 925-934 (1080)
25 1t2k_D Cyclic-AMP-dependent tr 44.8 52 0.0018 25.3 6.1 56 451-514 5-60 (61)
26 2wt7_A Proto-oncogene protein 43.5 68 0.0023 24.9 6.7 31 474-504 21-51 (63)
27 3i00_A HIP-I, huntingtin-inter 43.2 1.6E+02 0.0054 26.0 9.8 46 440-497 16-61 (120)
28 1gk6_A Vimentin; intermediate 41.6 63 0.0022 24.8 6.1 40 480-519 4-43 (59)
29 2xv5_A Lamin-A/C; structural p 40.9 78 0.0027 25.6 6.8 42 478-519 7-48 (74)
30 3iv1_A Tumor susceptibility ge 40.4 1.5E+02 0.005 24.3 8.3 69 469-551 4-72 (78)
31 3syn_E ATP-binding protein YLX 40.1 20 0.00067 22.0 2.2 17 546-562 4-20 (23)
32 3tnu_A Keratin, type I cytoske 38.8 2E+02 0.007 25.3 12.2 79 434-519 40-120 (131)
33 1p9i_A Cortexillin I/GCN4 hybr 38.5 32 0.0011 22.5 3.2 23 469-492 7-29 (31)
34 1jcd_A Major outer membrane li 36.1 41 0.0014 25.5 4.0 18 480-497 15-32 (52)
35 1zme_C Proline utilization tra 36.1 26 0.0009 27.0 3.2 24 478-501 46-69 (70)
36 3mq9_A Bone marrow stromal ant 34.8 1.5E+02 0.0051 31.4 10.1 64 438-503 372-438 (471)
37 2k48_A Nucleoprotein; viral pr 34.3 82 0.0028 27.2 6.1 77 423-504 26-103 (107)
38 1kd8_B GABH BLL, GCN4 acid bas 33.7 57 0.002 22.7 4.0 16 480-495 5-20 (36)
39 1jnm_A Proto-oncogene C-JUN; B 33.3 46 0.0016 25.7 4.2 20 480-499 40-59 (62)
40 3swk_A Vimentin; cytoskeleton, 31.8 2.1E+02 0.0074 23.5 8.3 63 435-497 3-84 (86)
41 3mov_A Lamin-B1; LMNB1, B-type 31.7 1.9E+02 0.0064 24.4 8.0 43 477-519 38-80 (95)
42 3vem_A Helicase protein MOM1; 31.4 2.2E+02 0.0074 25.0 8.4 53 444-511 37-90 (115)
43 3vmx_A Voltage-gated hydrogen 31.3 1.2E+02 0.0041 22.6 5.8 29 486-515 14-42 (48)
44 3etw_A Adhesin A; antiparallel 29.9 2.2E+02 0.0076 25.1 8.4 25 533-559 37-61 (119)
45 3m48_A General control protein 29.8 75 0.0026 21.8 4.0 20 480-499 4-30 (33)
46 2lw1_A ABC transporter ATP-bin 27.9 46 0.0016 27.6 3.5 24 479-502 25-48 (89)
47 3viq_A SWI5-dependent recombin 27.3 65 0.0022 28.6 4.6 37 478-514 9-45 (122)
48 2jee_A YIIU; FTSZ, septum, coi 25.8 2.8E+02 0.0095 22.8 9.1 65 446-510 5-75 (81)
49 2zxx_A Geminin; coiled-coil, c 25.5 2.8E+02 0.0095 22.7 7.7 30 463-498 27-56 (79)
50 1x8y_A Lamin A/C; structural p 25.3 2.8E+02 0.0096 22.7 8.0 43 477-519 29-71 (86)
51 1ci6_A Transcription factor AT 24.5 2.1E+02 0.0071 22.1 6.6 39 475-514 22-60 (63)
52 2pnv_A Small conductance calci 23.7 1E+02 0.0035 22.4 4.2 26 475-500 15-40 (43)
53 1uii_A Geminin; human, DNA rep 23.4 2.1E+02 0.0071 23.7 6.5 34 463-502 39-72 (83)
54 1gk4_A Vimentin; intermediate 23.2 3E+02 0.01 22.3 8.0 55 465-519 13-69 (84)
55 3tnu_B Keratin, type II cytosk 22.6 3.9E+02 0.013 23.3 12.9 79 434-519 38-118 (129)
56 1jnm_A Proto-oncogene C-JUN; B 21.9 84 0.0029 24.2 3.8 40 474-513 20-59 (62)
57 2yy0_A C-MYC-binding protein; 21.6 89 0.003 23.6 3.7 21 479-499 29-49 (53)
58 2dgc_A Protein (GCN4); basic d 21.1 1.1E+02 0.0038 23.8 4.3 24 474-497 28-51 (63)
59 3s4r_A Vimentin; alpha-helix, 21.0 3.6E+02 0.012 22.4 8.2 57 440-501 10-67 (93)
60 2oqq_A Transcription factor HY 20.8 2.4E+02 0.0083 20.3 5.8 32 481-513 8-40 (42)
61 3lay_A Zinc resistance-associa 20.2 2.1E+02 0.0071 26.9 6.8 53 447-501 75-131 (175)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=420.75 Aligned_cols=281 Identities=25% Similarity=0.399 Sum_probs=237.4
Q ss_pred CHHHHHHHhhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccc-------c---CCCCCCchhhHHHHHhc
Q 007091 76 WKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKE-------H---DNSFGVPRKWKKQIEKD 145 (618)
Q Consensus 76 ~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~~~~-------~---~~~~~~~e~~~~qIekD 145 (618)
..++|+.++++|||+.+|+.||+.++|+.....++.|+.+++.....-.... . ...........++|++|
T Consensus 37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~I~~D 116 (334)
T 2qq8_A 37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLD 116 (334)
T ss_dssp CCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------CCHHHHHHHH
T ss_pred ChHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHHHHHH
Confidence 4578999999999999999999999999777778889988765431100000 0 00011124567999999
Q ss_pred CCCCCCCCCCCCh--hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhc-cccCChhhHH
Q 007091 146 IPRTFPAHPALNE--DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYF-DGYYTEEMIE 222 (618)
Q Consensus 146 v~RTfp~~~~f~~--~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l-~~yf~~~~~~ 222 (618)
|+||||++++|.. .+++.|+|||.+|+.+||++|||||||+|||+||++++|++|||||+++|+++. .+||..+..+
T Consensus 117 v~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~ 196 (334)
T 2qq8_A 117 ISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGL 196 (334)
T ss_dssp HHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSCCHH
T ss_pred HhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCChHH
Confidence 9999999999975 468999999999999999999999999999999999999999999999999874 5788888889
Q ss_pred HHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 007091 223 AQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGP 302 (618)
Q Consensus 223 l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~ 302 (618)
++..+.+|+.||+.++|+||+||.+.|+.+.+|+++||+|+|+++||++.++||||+||++|..+ +|++|+|||..+++
T Consensus 197 ~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~-l~~valaiL~~~~~ 275 (334)
T 2qq8_A 197 MLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEF-LFRTALGILKLFED 275 (334)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 89999999999999
Q ss_pred HhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhHHHHHHHHHHhhc
Q 007091 303 ALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKG 367 (618)
Q Consensus 303 ~LL~~~d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~~~r~~~ 367 (618)
.|+++ |+++++.+|+++|.. +|++.++..|....... +.|++..+.+.++++.+.
T Consensus 276 ~Ll~~-d~~~il~~L~~lp~~-~d~~~l~~~a~~l~~~~--------~~k~~~~~~~~~~~~~~~ 330 (334)
T 2qq8_A 276 ILTKM-DFIHMAQFLTRLPED-LPAEELFASIATIQMQS--------RNKKWAQVLTALQKDSRE 330 (334)
T ss_dssp HHHTC-CHHHHHHHHHSCCTT-CCHHHHHHHHHHCCCEE--------TTEEHHHHHHHHHC----
T ss_pred HHhcC-CHHHHHHHHHhCCCc-CCHHHHHHHHHHccCcH--------HHhhHHHHHHHHHHHHHh
Confidence 99997 899999999999864 89999999998754322 255666777777766554
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-49 Score=414.13 Aligned_cols=259 Identities=31% Similarity=0.589 Sum_probs=234.2
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHhcCccc-cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCC
Q 007091 78 EELESLVHGGVPKDLRGELWQAFVGVKAR-RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPAL 156 (618)
Q Consensus 78 ekLk~lir~GIP~~lR~~VW~~LLGv~~~-~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTfp~~~~f 156 (618)
++|+.++++|||+.+|+.||+.|+|+.+. ...+.|..++.... ...++|++|++||||++++|
T Consensus 24 ~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~~~~Y~~l~~~~~----------------~~~~~I~~Dv~Rt~p~~~~f 87 (310)
T 3hzj_A 24 KGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKDS----------------AQESVITRDIHRTFPAHDYF 87 (310)
T ss_dssp TTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHHHHHHHHHTTSCC----------------TTHHHHHHHHTTSSTTSTTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCcchhHHHHHHHHHhccC----------------CcHHHHHHHHHhhCCCchhh
Confidence 56999999999999999999999999763 34567877653211 13689999999999999999
Q ss_pred Ch---hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhh-ccccCChhhHHHHHHHHHHHH
Q 007091 157 NE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEE 232 (618)
Q Consensus 157 ~~---~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~-l~~yf~~~~~~l~~~~~vf~~ 232 (618)
.. .+++.|+|||.+|+.+||++|||||||+|+|+||++++|++|||||+++|.++ ++++|.+++++++..+.+|+.
T Consensus 88 ~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (310)
T 3hzj_A 88 KDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLER 167 (310)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHH
Confidence 64 47899999999999999999999999999999999999999999999999986 789999999999999999999
Q ss_pred HHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCCCHHH
Q 007091 233 LIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGD 312 (618)
Q Consensus 233 LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~LL~~~d~~e 312 (618)
+|+.++|+||+||.+.|+++.+|+++||+|+|++++|++.++||||+||++|.++ +|++|+||+..+++.|+++ |+++
T Consensus 168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~-l~~v~lail~~~~~~Ll~~-d~~~ 245 (310)
T 3hzj_A 168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNI-IFHVALALLKTSKEDLLQA-DFEG 245 (310)
T ss_dssp HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHTHHHHHTC-CHHH
T ss_pred HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHcC-CHHH
Confidence 9999999999999999999999999999999999999999999999999999998 8999999999999999997 9999
Q ss_pred HHHHHH-hccCC---CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhHH
Q 007091 313 AITLLQ-SLAGS---TFDSSQLVFTACMGYLTVTEARLQELREKHRPA 356 (618)
Q Consensus 313 i~~lLq-~l~~~---~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~ 356 (618)
++.+|+ .+|.. ..|++.|+..|+.. .++++.+.+++++|...
T Consensus 246 ~l~~l~~~lp~~~~~~~d~~~ll~~A~~l--~~~~~~l~~~~~ey~~~ 291 (310)
T 3hzj_A 246 ALKFFRVQLPKRYRAEENARRLMEQACNI--KVPTKKLKKYEKEYQTM 291 (310)
T ss_dssp HHHHHHTHHHHTTCSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 999997 45543 34788999999864 59999999999998863
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.7e-48 Score=410.98 Aligned_cols=262 Identities=28% Similarity=0.480 Sum_probs=234.5
Q ss_pred CCCHHHHHHHhhcCCChhhHHHHHHHHhcCccc---------cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHh
Q 007091 74 FPWKEELESLVHGGVPKDLRGELWQAFVGVKAR---------RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEK 144 (618)
Q Consensus 74 ~~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~---------~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIek 144 (618)
..+.++|+.++++|||+.+|+.||+.|+|+.+. ...+.|.++++... ...++|++
T Consensus 46 ~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~~----------------~~~~~I~~ 109 (331)
T 3qye_A 46 KFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLT----------------SQQHAILI 109 (331)
T ss_dssp CCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSCC----------------TTHHHHHH
T ss_pred cCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhcC----------------CchhHHHH
Confidence 346789999999999999999999999998651 23467888865421 12589999
Q ss_pred cCCCCCCCCCCCCh---hhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhh-ccccCChhh
Q 007091 145 DIPRTFPAHPALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTEEM 220 (618)
Q Consensus 145 Dv~RTfp~~~~f~~---~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~-l~~yf~~~~ 220 (618)
|++||||++++|.. .++..|+|||.+|+.+||++|||||||+|+|+||++++|++|||||+.+|.++ ++++|.+++
T Consensus 110 Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~ 189 (331)
T 3qye_A 110 DLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDM 189 (331)
T ss_dssp HHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTC
T ss_pred hhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCCh
Confidence 99999999999974 57899999999999999999999999999999999999999999999999987 789999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 007091 221 IEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELY 300 (618)
Q Consensus 221 ~~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~ 300 (618)
.+++..+.+|..+|+.++|+||+||.+.|+.+.+|+++||+|+|++.+|++.++||||+||++|.++ +|++|+|||..+
T Consensus 190 ~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~-l~~valaiL~~~ 268 (331)
T 3qye_A 190 IILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEV-IFKVALSLLGSH 268 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred hhHhhcCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhhccCCHHHHHHHHHHhhH
Q 007091 301 GPALVTTKDAGDAITLLQSLAGST--FDSSQLVFTACMGYLTVTEARLQELREKHRP 355 (618)
Q Consensus 301 k~~LL~~~d~~ei~~lLq~l~~~~--~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~ 355 (618)
++.|++++|+++++.+|++.++.. .|++.++..|+.. .+ ++.+.+++..|..
T Consensus 269 ~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l--~~-s~~l~~~e~ey~~ 322 (331)
T 3qye_A 269 KPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEM--DI-AKQLQAYEVEYHV 322 (331)
T ss_dssp HHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC--Cc-hHHHHHHHHHHHH
Confidence 999999999999999999855532 3778899999863 34 4778888877764
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=2.7e-46 Score=396.55 Aligned_cols=255 Identities=22% Similarity=0.372 Sum_probs=222.9
Q ss_pred CCHHHHHHHhhcCCChhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHh
Q 007091 75 PWKEELESLVHGGVPKDLRGELWQAFVGVKARR----------TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEK 144 (618)
Q Consensus 75 ~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIek 144 (618)
.+.++||.++++|||+.+|+.||+.++|+.+.. ....|..+++....... .....+..++|++
T Consensus 38 ~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~-------~~~~~~~~~~I~~ 110 (345)
T 2qfz_A 38 TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRN-------DEVHQDTYRQIHI 110 (345)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-------ccchHHHHHHHHH
Confidence 467899999999999999999999999986532 34679888876542210 0123456899999
Q ss_pred cCCCCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcC-------------------------Chh
Q 007091 145 DIPRTFPAHPALN-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-------------------------PEE 198 (618)
Q Consensus 145 Dv~RTfp~~~~f~-~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~-------------------------~Ee 198 (618)
||+||+|+ ++|. +.+++.|+|||.+|+.+||++|||||||+|+|+||+++ +|+
T Consensus 111 Dv~RT~p~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~ 189 (345)
T 2qfz_A 111 DIPRMSPE-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEA 189 (345)
T ss_dssp HGGGCSCH-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHH
T ss_pred hCcccCCc-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHH
Confidence 99999999 9986 45678999999999999999999999999999998764 289
Q ss_pred HHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHH
Q 007091 199 NAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWD 278 (618)
Q Consensus 199 dAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD 278 (618)
+|||||+.+|+++ +++|..++++++..+.+|+.||+.++|+||+||.+.|+++.+|+++||+|||+++||++.++||||
T Consensus 190 daF~~f~~lm~~~-~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD 268 (345)
T 2qfz_A 190 DTYWCMSKLLDGI-QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWD 268 (345)
T ss_dssp HHHHHHHHHHHTS-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHH
Confidence 9999999999986 778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCch--HHHHHHHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCC---CHHHHHHHHHHhh
Q 007091 279 VLLYEGNRV--MLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTF---DSSQLVFTACMGY 338 (618)
Q Consensus 279 ~ff~eG~~~--~LfrvaLALL~~~k~~LL~~~d~~ei~~lLq~l~~~~~---D~~~Li~~A~~~~ 338 (618)
+||++|..+ +++++|+|+|..+++.|+.+.|+++++.+|++++...+ |++.|+..|+...
T Consensus 269 ~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~ 333 (345)
T 2qfz_A 269 TYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLK 333 (345)
T ss_dssp HHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHH
Confidence 999999874 47789999999999999988899999999999998765 5788999997643
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.3e-45 Score=396.83 Aligned_cols=252 Identities=22% Similarity=0.370 Sum_probs=222.9
Q ss_pred CCHHHHHHHhhcCCChhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHh
Q 007091 75 PWKEELESLVHGGVPKDLRGELWQAFVGVKARR----------TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEK 144 (618)
Q Consensus 75 ~~~ekLk~lir~GIP~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIek 144 (618)
.+.++||.++++|||+.+|+.||+.|+|+.+.. ..+.|..+++..... ....+.+..++|++
T Consensus 21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~--------~~~~~~~~~~qI~~ 92 (396)
T 1fkm_A 21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSD--------QHSRDIPTWHQIEI 92 (396)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSS--------SCSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc--------cCcccHHHHHHHHH
Confidence 568999999999999999999999999997632 356799888765421 11234457899999
Q ss_pred cCCCCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhc----------------------CC-----
Q 007091 145 DIPRTFPAHPALN-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLL----------------------MP----- 196 (618)
Q Consensus 145 Dv~RTfp~~~~f~-~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~----------------------~~----- 196 (618)
||.||||++++|. +.+++.|+|||.+|+.+||++|||||||+|+++||++ ++
T Consensus 93 Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (396)
T 1fkm_A 93 DIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQIT 172 (396)
T ss_dssp HGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHH
T ss_pred HhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhh
Confidence 9999999999996 5678999999999999999999999999999999875 33
Q ss_pred --hhHHHHHHHHhHHhhccccCChhhHHHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHH
Q 007091 197 --EENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVL 274 (618)
Q Consensus 197 --EedAFw~l~~Lm~~~l~~yf~~~~~~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vl 274 (618)
|++|||||++||.++ .++|.+++.+++..+.+|+.||+.++|+||+||.+.|+.+.+|+++||+|||+++||++.++
T Consensus 173 ~~E~daF~~f~~lm~~~-~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vl 251 (396)
T 1fkm_A 173 DLEADTFWCLTKLLEQI-TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVI 251 (396)
T ss_dssp HHHHHHHHHHHHHHGGG-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHH
Confidence 899999999999984 78888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---------------------------------------------------C-----------chHHHHH
Q 007091 275 RVWDVLLYEG---------------------------------------------------N-----------RVMLFRT 292 (618)
Q Consensus 275 RIWD~ff~eG---------------------------------------------------~-----------~~~Lfrv 292 (618)
||||+||++| . ..+++++
T Consensus 252 rlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 331 (396)
T 1fkm_A 252 RMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFV 331 (396)
T ss_dssp HHHHHHHHHHC------------------------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHH
Confidence 9999999998 2 1247789
Q ss_pred HHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCC---CHHHHHHHHHH
Q 007091 293 ALALMELYGPALVTTKDAGDAITLLQSLAGSTF---DSSQLVFTACM 336 (618)
Q Consensus 293 aLALL~~~k~~LL~~~d~~ei~~lLq~l~~~~~---D~~~Li~~A~~ 336 (618)
|+|||..+++.|+++ |+++++.+|+++|...| |++.++..|+.
T Consensus 332 ~~AlL~~~r~~Ll~~-df~~~l~~L~~~p~~~~~~~di~~ll~~A~~ 377 (396)
T 1fkm_A 332 CAAFLIKWSDQLMEM-DFQETITFLQNPPTKDWTETDIEMLLSEAFI 377 (396)
T ss_dssp HHHHHHHTHHHHTTC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHhcCCCCCcccccHHHHHHHHHH
Confidence 999999999999984 89999999999988654 78899999874
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=5.9e-46 Score=385.72 Aligned_cols=251 Identities=17% Similarity=0.215 Sum_probs=221.2
Q ss_pred CCCHHHHHHHhhc--C-CChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 007091 74 FPWKEELESLVHG--G-VPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (618)
Q Consensus 74 ~~~~ekLk~lir~--G-IP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~~~qIekDv~RTf 150 (618)
..+.++|+.+++. | +|+.+|+.||+.|+|+.+...+..|...... +....++|++||+|||
T Consensus 31 ~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~~~~~~~~----------------~~~~~~qI~~Dv~RT~ 94 (292)
T 4hl4_A 31 PTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQ----------------MSKDYQQVLLDVRRSL 94 (292)
T ss_dssp SCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSCCCTTHHH----------------HCTTHHHHHHHHHTTG
T ss_pred cccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCchhhhhcc----------------cchhHHHHHHhhhhhh
Confidence 4568899999874 3 8999999999999999887655545322111 1124799999999999
Q ss_pred CCCCCCC-----hhhHHHHHHHHHHHHhhCCCCCccccchhHHHHHhhcCChhHHHHHHHHhHHhhccccCChhhHHHHH
Q 007091 151 PAHPALN-----EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQV 225 (618)
Q Consensus 151 p~~~~f~-----~~g~~~L~rIL~aya~~np~iGY~QGMn~Iaa~LLl~~~EedAFw~l~~Lm~~~l~~yf~~~~~~l~~ 225 (618)
|.++.|. ..+++.|+|||.+|+.+||++|||||||+|+|+||++++|++|||||+.+|..++++||.+++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~l~~~~~~~~~~~~~ 174 (292)
T 4hl4_A 95 RRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDPTMDNTKH 174 (292)
T ss_dssp GGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTTTTGGGCSSSCTTTG
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 9999874 23578999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCC-hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHh
Q 007091 226 DQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILP-WESVLRVWDVLLYEGNRVMLFRTALALMELYGPAL 304 (618)
Q Consensus 226 ~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp-~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~k~~L 304 (618)
.+.+++.+|+.++|+||+||.+.++ ..+|+++||+|+|++++| ++.++||||+||++|..+ ++++|+||+..+++.|
T Consensus 175 ~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~-~~~v~~ail~~~~~~L 252 (292)
T 4hl4_A 175 ILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLM-PIYFAAVIVLYREQEV 252 (292)
T ss_dssp GGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTH-HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 579999999999999996 999999999999999987 7789999999999999
Q ss_pred hcCC-CHHHHHHHHHhccCCCCCHHHHHHHHHHhhccCCH
Q 007091 305 VTTK-DAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTE 343 (618)
Q Consensus 305 L~~~-d~~ei~~lLq~l~~~~~D~~~Li~~A~~~~~~i~~ 343 (618)
++++ |++.++.+++++| ..+|++.++..|...+.+.++
T Consensus 253 l~~~~d~~~l~~~l~~lp-~~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 253 LDCDCDMASVHHLLSQIP-QDLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp HTSCCSTTHHHHHHHSCC-SSCCHHHHHHHHHHHHHHSCC
T ss_pred HcCCCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHCCC
Confidence 9985 7888888999987 478999999999988776654
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=303.45 Aligned_cols=228 Identities=17% Similarity=0.246 Sum_probs=183.8
Q ss_pred CCCCCCCHHHHHHHhhcC-CChhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhcccccccCCCCCCchhh
Q 007091 70 PEPYFPWKEELESLVHGG-VPKDLRGELWQAFVGVKARR----------TESYYQDLLAQEINADESKEHDNSFGVPRKW 138 (618)
Q Consensus 70 ~~~~~~~~ekLk~lir~G-IP~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~~~~~~~~~~~~~e~~ 138 (618)
+.+...+.++|++++|+| ||+.+|+.||++|+|+.+.. ..+.|.+++.... +
T Consensus 33 l~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~~-----------------~ 95 (294)
T 3qwl_A 33 LKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHALK-----------------V 95 (294)
T ss_dssp TTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHHH-----------------H
T ss_pred hcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhhh-----------------h
Confidence 345677899999999998 99999999999999996632 3466777776522 1
Q ss_pred HHHHHhcCCCCCCCCCCCChhhHHHHHHHHHHHHh----------hCCCCCccccchhHHHHHhhc-CChhHHHHHHHHh
Q 007091 139 KKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYAL----------HNPSVGYCQAMNFFAGLLLLL-MPEENAFWTFVGI 207 (618)
Q Consensus 139 ~~qIekDv~RTfp~~~~f~~~g~~~L~rIL~aya~----------~np~iGY~QGMn~Iaa~LLl~-~~EedAFw~l~~L 207 (618)
.++|..+ .|-+ ...+..|.. .+++ .++|||..|+++++.+ .+|++|||||+++
T Consensus 96 ~r~I~~~----tP~~-----------~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~L 159 (294)
T 3qwl_A 96 VRFVSDA----TPQA-----------EVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRF 159 (294)
T ss_dssp TTSCCTT----SCHH-----------HHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hhhhhcc----CchH-----------HHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2333332 2211 111222211 1222 2569999999998865 4899999999999
Q ss_pred HHhhccccCChhhHHHHHHHHHHHHHHHHhChhhhhhccccccccchhhhhhhhhhhcccCChHHHHHHHHHHHhcCCch
Q 007091 208 IDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRV 287 (618)
Q Consensus 208 m~~~l~~yf~~~~~~l~~~~~vf~~LLk~~~P~L~~HL~~lgi~~~~f~~~WfltLFs~~Lp~e~vlRIWD~ff~eG~~~ 287 (618)
|++ +.++|.++++|++. .++.||+.++|+||+||++.|+.+.+++.+||+|+|++++|++.++||||+||++|.++
T Consensus 160 m~~-l~~~f~~~~~gl~~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~ 235 (294)
T 3qwl_A 160 VNQ-LNTKYRDSLPQLPK---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKI 235 (294)
T ss_dssp HHH-HHTTTTTTGGGHHH---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTH
T ss_pred HHH-HHHhhCCChhHHHH---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchH
Confidence 999 56889999998876 35899999999999999999998888888999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHh
Q 007091 288 MLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMG 337 (618)
Q Consensus 288 ~LfrvaLALL~~~k~~LL~~~d~~ei~~lLq~l~~~~~D~~~Li~~A~~~ 337 (618)
++++|+|+|..+++.|+++++.++++.+|+++|. .|++.++..|+..
T Consensus 236 -l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~--~di~~ll~~A~~l 282 (294)
T 3qwl_A 236 -LVFVAVEILLTFKIKVMALNSAEKITKFLENIPQ--DSSDAIVSKAIDL 282 (294)
T ss_dssp -HHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCS--TTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCc--ccHHHHHHHHHHH
Confidence 7889999999999999999888999999999984 5799999999764
No 8
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=84.60 E-value=1.9 Score=32.65 Aligned_cols=46 Identities=35% Similarity=0.492 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHH--HHHHHHHHHhhh
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLA---DKREQESAM--IQVLMKVEQEQR 521 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~ 521 (618)
.-|+|||.|.|...==+.|+|..|. +-=||=.-| ||.|+.||||-+
T Consensus 6 kwReqL~qKFEeIRwlIeE~Rh~Lk~TensfeQItfmqalQLlleveqeir 56 (58)
T 1pd3_A 6 KWREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLLEVEQEIR 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999988999998774 555777766 899999999864
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.35 E-value=24 Score=47.12 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=40.5
Q ss_pred HHHHHHHHhHHHhHhHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 007091 447 ELCSLLEDKRSAVLRAE-ELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (618)
Q Consensus 447 ~~~~ll~e~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (618)
-...||.+++..+.... -|+.+|.-+ .+-+++|+.|..++++++..|..|+++-.+||+.+.
T Consensus 1903 ~y~~ll~~K~~el~~~~~rl~~GL~KL------~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1903 QVVLLINEKRDQLEEEQLHLNIGLKKL------RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665544332 344444443 234678899999999999999988887777766543
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.04 E-value=52 Score=44.07 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 541 VNVLEEKYEKAMASVAQMEKRAVM 564 (618)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~ 564 (618)
...||++|++|++--..++..+-.
T Consensus 2044 l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2044 IATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888777655554444333
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.94 E-value=5.7 Score=33.43 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007091 461 RAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (618)
Q Consensus 461 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (618)
+..+++....++ ..-...|.++|++|+.|+..|+++|.+..++
T Consensus 37 r~~e~~~r~~~L--e~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 37 RNLETQHKVLEL--TAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 334444333333 3345689999999999999999999987664
No 12
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=72.66 E-value=64 Score=30.34 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007091 438 QEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (618)
Q Consensus 438 ~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (618)
..-+.||+.++-.+..+...-.-.-.++...+...- .....+.++++.++.++.+++..+...+.+
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLE--DELVSLQKKLKATEDELDKYSEALKDAQEK 70 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444444444443333221 112333334444444444444444433333
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.12 E-value=34 Score=37.52 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007091 537 QRYAVNVLEEKYEKAMASVAQMEKRAVM 564 (618)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (618)
++=+++-.+++|++.-....+||++.-.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3334455666666655556666665433
No 14
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.81 E-value=54 Score=28.73 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007091 440 QVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR--RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVE 517 (618)
Q Consensus 440 q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (618)
|+.-|.+++-+|=++.-...--..+|+..+.+-.+.--. -.|-++++.-|+.+.+||++++.-+..=+-.|++|.. .
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~-~ 85 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ-S 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 444445555444443333334456778877665433222 2466788888999999999999988887777888764 3
Q ss_pred HhhhhcHHHhHhhHhhHHHhHHHHH
Q 007091 518 QEQRITEDARRNAEQDARAQRYAVN 542 (618)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (618)
+|+=-.|--|.-+|-|--.=||.+|
T Consensus 86 Re~V~~eL~rLQ~eNd~L~Gk~~~h 110 (112)
T 1x79_B 86 REQVSEELVRLQKDNDSLQGKHSLH 110 (112)
T ss_dssp HHHHHTC------------------
T ss_pred HHHHHHHHHHHHhhccchhhhhhhc
Confidence 4443344445555655554455444
No 15
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.15 E-value=8.7 Score=31.66 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 461 RAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 461 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
+..+++....++ ..-...|.++|++|+.|+..|+++|..
T Consensus 37 r~~e~~~r~~~L--~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLEL--TAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333 334567999999999999999998865
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.48 E-value=1.2e+02 Score=33.14 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 007091 546 EKYEKAMASVAQME 559 (618)
Q Consensus 546 ~~~~~~~~~~~~~~ 559 (618)
+.-..+.+.+.++|
T Consensus 565 ~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 565 QETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=54.63 E-value=62 Score=38.90 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=15.4
Q ss_pred hcCCChhhHHHHHHHHhcC
Q 007091 85 HGGVPKDLRGELWQAFVGV 103 (618)
Q Consensus 85 r~GIP~~lR~~VW~~LLGv 103 (618)
.-||+++-...||.+|.++
T Consensus 314 ~lg~~~~e~~~i~~ilaaI 332 (1080)
T 2dfs_A 314 LLGISDSYQMGIFRILAGI 332 (1080)
T ss_dssp HTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 3599999999999988654
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.27 E-value=24 Score=42.76 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=14.3
Q ss_pred cCCChhhHHHHHHHHhcC
Q 007091 86 GGVPKDLRGELWQAFVGV 103 (618)
Q Consensus 86 ~GIP~~lR~~VW~~LLGv 103 (618)
-||++.-...||.+|.++
T Consensus 341 lg~~~~e~~~i~~ilaai 358 (1184)
T 1i84_S 341 MGFTEEEQTSILRVVSSV 358 (1184)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHH
Confidence 488888888888888654
No 19
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.20 E-value=32 Score=26.86 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 462 AEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 462 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
.++|+...-++- .-+.+|.++|++|+.|+..|++.|.+
T Consensus 25 ~~~le~~~~~L~--~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 25 QEALTGECKELE--KKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555554442 23457888888888888888887754
No 20
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.75 E-value=19 Score=25.10 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007091 480 QLSARIEQLEQEVAELQ 496 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~~ 496 (618)
||.+|||.|..+.++|.
T Consensus 5 QLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLE 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 67788887766666654
No 21
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.30 E-value=31 Score=41.78 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007091 481 LSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~ 501 (618)
+.++.++|++++.++..-+.+
T Consensus 918 l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 918 LAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.67 E-value=81 Score=24.15 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007091 479 RQLSARIEQLEQEVAELQQSL 499 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~ 499 (618)
..|.++|.+|..|+..|++.|
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666666666654
No 23
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.90 E-value=1.3e+02 Score=32.85 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHH
Q 007091 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKA 551 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (618)
+|-..-.|++.+-++|++.++++=+|.++-=.+-|. -.-++-|+|-||-.|..||.|+. +.+||++
T Consensus 2 ~~~a~yq~~la~yq~elarvqkana~aka~Ye~~~a--------e~~a~n~~i~aeNeaikkrNa~a--ka~Ye~~ 67 (497)
T 3iox_A 2 ANEADYQAKLTAYQTELARVQKANADAKAAYEAAVA--------ANNAANAALTAENTAIKKRNADA--KADYEAK 67 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 456677899999999999999998886543222111 11135677889999999998875 4444444
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.90 E-value=2.1e+02 Score=34.28 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=0.0
Q ss_pred CHHHHhccCC
Q 007091 418 NLDEMLSGLS 427 (618)
Q Consensus 418 ~~~~~~~~~~ 427 (618)
.+++-+.+|.
T Consensus 925 ~LE~kl~eLq 934 (1080)
T 2dfs_A 925 GLENKIMQLQ 934 (1080)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3344344444
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.78 E-value=52 Score=25.29 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=36.6
Q ss_pred HHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 007091 451 LLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (618)
Q Consensus 451 ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (618)
.++.||-|..+..+ =+.+-...|..+|+.|+.+-++|+.-++.-+++-..+-|.||
T Consensus 5 r~erNr~AA~k~R~--------rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 5 FLERNRAAASRSRQ--------KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555555544432 244556677888888888888888888777766655555554
No 26
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.51 E-value=68 Score=24.89 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007091 474 KQDNRRQLSARIEQLEQEVAELQQSLADKRE 504 (618)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (618)
+.+-...|..+|+.|+.+-.+|+.-++.-++
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544333
No 27
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.23 E-value=1.6e+02 Score=26.02 Aligned_cols=46 Identities=24% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007091 440 QVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQ 497 (618)
Q Consensus 440 q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (618)
+++.|+.|+.+|=-+.-.=.+ =.+.--.+|..+|-+||+|+++-|+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~------------E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKT------------ESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777776444322211 1244445777888888888888663
No 28
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=41.56 E-value=63 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 007091 480 QLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
++.+++..||.+++.+|+-.+.--..=+..+-|=+++|.|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~E 43 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIE 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5678888999999988887766544446666776777766
No 29
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=40.91 E-value=78 Score=25.60 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 007091 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (618)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
|.++.+.|..||+++.++|+-++.....-+..+-|=+++|.|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~E 48 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888899999888887766544446667777777766
No 30
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=40.43 E-value=1.5e+02 Score=24.33 Aligned_cols=69 Identities=16% Similarity=0.314 Sum_probs=42.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHH
Q 007091 469 LMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKY 548 (618)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (618)
|+-.|..-.||.|..+++|--+|+..||+.=.+-.+=-+-.-=.+-|+++|+.- =.-.+.+|++|-
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~--------------l~~ni~~lk~K~ 69 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE--------------VDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 445577778888888888888888888877555444333333334456655432 223466777776
Q ss_pred HHH
Q 007091 549 EKA 551 (618)
Q Consensus 549 ~~~ 551 (618)
++.
T Consensus 70 ~EL 72 (78)
T 3iv1_A 70 EEL 72 (78)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 31
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=40.11 E-value=20 Score=22.01 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007091 546 EKYEKAMASVAQMEKRA 562 (618)
Q Consensus 546 ~~~~~~~~~~~~~~~~~ 562 (618)
..|++|-..-|.||||-
T Consensus 4 nrydqaatlrakmekre 20 (23)
T 3syn_E 4 NRYDQAATLRAKMEKRE 20 (26)
T ss_pred chHHHHHHHHHHHHHHh
Confidence 36899999999999985
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.84 E-value=2e+02 Score=25.29 Aligned_cols=79 Identities=25% Similarity=0.313 Sum_probs=52.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMV--KQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQ 511 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (618)
+.++.-++..|..|+-.+...+. .||.+|.++= ..-...++.+++..||.++..+|+-++.--..=+.++-
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~-------sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKA-------SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888866654433 3555554432 22344677889999999999999887765444456777
Q ss_pred HHHHHHHh
Q 007091 512 VLMKVEQE 519 (618)
Q Consensus 512 ~~~~~~~~ 519 (618)
|=|++|.|
T Consensus 113 vKl~Ld~E 120 (131)
T 3tnu_A 113 VKTRLEQE 120 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
No 33
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=38.50 E-value=32 Score=22.52 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=14.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 007091 469 LMEMVKQDNRRQLSARIEQLEQEV 492 (618)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~ 492 (618)
|......+| .||.||||.|-+.|
T Consensus 7 llasleaen-kqlkakveellakv 29 (31)
T 1p9i_A 7 LLASLEAEN-KQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHh
Confidence 333344444 57888888876655
No 34
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.13 E-value=41 Score=25.53 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007091 480 QLSARIEQLEQEVAELQQ 497 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~ 497 (618)
+|++||.||..+|..||.
T Consensus 15 ~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 15 TANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666666654
No 35
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.06 E-value=26 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 478 RRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
...|..+|++||+.|..|+..|++
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888888888887654
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=34.84 E-value=1.5e+02 Score=31.39 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHH---hHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007091 438 QEQVVWLKVELCSLLEDKRSA---VLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKR 503 (618)
Q Consensus 438 ~~q~~~~~~~~~~ll~e~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (618)
++=+.-+..++-++|++.+.. .=....|...|-+. ++|-.++.++...-..-|-.|+..|.-|.
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEA--QKGFQDVEAQAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHH--hhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 333444445555555555432 22233344444442 33333444443333333334444443333
No 37
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.27 E-value=82 Score=27.22 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=42.0
Q ss_pred hccCCCCccccccchHHHHHHHHHHHHHHHHHhHHHhHhHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 423 LSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEE-LETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 423 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
|++..+..-.++.+||+-+. .+..=|...+--+-.|++ .|.-=.+.=++ .-++=++-|..|+..+++|++.|+|
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~----~~E~QL~iArQKLkdAe~~~E~DPDevNK~-tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENIT----AHEQQLVTARQKLKDAEKAVEVDPDDVNKS-TLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77887777777777766544 233333333222222221 11000011111 1123356789999999999999999
Q ss_pred HHH
Q 007091 502 KRE 504 (618)
Q Consensus 502 ~~~ 504 (618)
...
T Consensus 101 ~va 103 (107)
T 2k48_A 101 LVA 103 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 38
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.69 E-value=57 Score=22.73 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 007091 480 QLSARIEQLEQEVAEL 495 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~ 495 (618)
||.+|||.|-.+-++|
T Consensus 5 QLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 6677777654433333
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=33.31 E-value=46 Score=25.71 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007091 480 QLSARIEQLEQEVAELQQSL 499 (618)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~ 499 (618)
.|.++|.+|+.|+..|++.|
T Consensus 40 ~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 40 ELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 40
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.76 E-value=2.1e+02 Score=23.50 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHH------HHHHHHHH-------------hHHHHHHHHHHHHHHHHHHH
Q 007091 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELET------ALMEMVKQ-------------DNRRQLSARIEQLEQEVAEL 495 (618)
Q Consensus 435 ~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~------~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 495 (618)
.+|..|+.-+..+=-+|.-|.......++++-. ++-.-|.. -+|-.|.+|||.|..|+.=|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887777666666665522 22222221 13556777777777777666
Q ss_pred HH
Q 007091 496 QQ 497 (618)
Q Consensus 496 ~~ 497 (618)
|+
T Consensus 83 kk 84 (86)
T 3swk_A 83 KK 84 (86)
T ss_dssp TT
T ss_pred hh
Confidence 54
No 41
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.69 E-value=1.9e+02 Score=24.41 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 007091 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (618)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
..+++.+.+..||+++..+|+-++..-..=+..+-|=+++|.|
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~E 80 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDME 80 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888899999888887776544345677777777766
No 42
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=31.37 E-value=2.2e+02 Score=24.98 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHH
Q 007091 444 LKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADK-REQESAMIQ 511 (618)
Q Consensus 444 ~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 511 (618)
|+.||.||--+.....=. +.|-+-||.+. .|+|++++++-.--| ||.|.+-+|
T Consensus 37 L~~ELeRLr~~~d~~~K~------------HE~kklqLkse---~e~E~ae~k~KYD~~lqe~ese~~~ 90 (115)
T 3vem_A 37 FLHELEKLRRESENSKKT------------FEEKKSILKAE---LERKMAEVQAEFRRKFHEVEAEHNT 90 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999987665544444 44457777665 677888888765332 455555444
No 43
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=31.32 E-value=1.2e+02 Score=22.57 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 007091 486 EQLEQEVAELQQSLADKREQESAMIQVLMK 515 (618)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (618)
++|-+.|.+| +-..++.|||..=|+-|+|
T Consensus 14 ~~L~~kv~~L-e~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 14 IQLATKIQHL-EFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHccHHHHHHHHHHHHHH
Confidence 4444455555 3467888899888888776
No 44
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=29.89 E-value=2.2e+02 Score=25.08 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=11.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007091 533 DARAQRYAVNVLEEKYEKAMASVAQME 559 (618)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (618)
++|+++-|-. ++.|++.-..++.|+
T Consensus 37 E~A~~~La~~--~~l~~~i~er~~~i~ 61 (119)
T 3etw_A 37 DAARQALAQN--EQVYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5555554443 444444444444433
No 45
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.81 E-value=75 Score=21.79 Aligned_cols=20 Identities=50% Similarity=0.753 Sum_probs=10.7
Q ss_pred HHHHHHHH-------HHHHHHHHHHHh
Q 007091 480 QLSARIEQ-------LEQEVAELQQSL 499 (618)
Q Consensus 480 ~~~~~~~~-------~~~~~~~~~~~~ 499 (618)
||..|||. ||+||..|+..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45555555 455555555544
No 46
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.95 E-value=46 Score=27.59 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q 007091 479 RQLSARIEQLEQEVAELQQSLADK 502 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~ 502 (618)
..|-++|++||+++++|...|+|-
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 367789999999999999888774
No 47
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=27.33 E-value=65 Score=28.61 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 007091 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (618)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (618)
++.|.++|..|+.++..|+|++.-+..-+.+-|+.|+
T Consensus 9 ~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI 45 (122)
T 3viq_A 9 RLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLI 45 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5678999999999999999998877777777788775
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.83 E-value=2.8e+02 Score=22.84 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=35.0
Q ss_pred HHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007091 446 VELCSLLEDKRSAVLRAEELETALMEMVKQDN------RRQLSARIEQLEQEVAELQQSLADKREQESAMI 510 (618)
Q Consensus 446 ~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (618)
.|++.=||.+....+.-..|=.-=.+=.|..| ..++.+..+.|.+|...|++-.+..++.=.++|
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677776666554433211111122222 123444555577777777777777777655544
No 49
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.52 E-value=2.8e+02 Score=22.73 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007091 463 EELETALMEMVKQDNRRQLSARIEQLEQEVAELQQS 498 (618)
Q Consensus 463 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (618)
.+|..+|.| .++|-..|+++..|++.|++-
T Consensus 27 ~AL~eaL~E------N~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 27 KALYEALKE------NEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 456666654 567888999999999888763
No 50
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.33 E-value=2.8e+02 Score=22.70 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 007091 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (618)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
...++.++|..||.+++++|.-++..-..=+..+-|=+++|.|
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~E 71 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455777888889888888887765543335566666666665
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.45 E-value=2.1e+02 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 007091 475 QDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (618)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (618)
.+-...|..+++.|+++.++|+.-++.-+ .|.++|--||
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~-~E~~~Lk~ll 60 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLA-KEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34456788888999999999888886554 4455554443
No 52
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.69 E-value=1e+02 Score=22.38 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007091 475 QDNRRQLSARIEQLEQEVAELQQSLA 500 (618)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (618)
++..+.|..++..||..+..|+..|+
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566688888888888888877664
No 53
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.41 E-value=2.1e+02 Score=23.70 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007091 463 EELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADK 502 (618)
Q Consensus 463 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (618)
.+|..+|.| .+.|-..|++|+.|++.|++.+..-
T Consensus 39 ~AL~eaL~E------N~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 39 KALYEALKE------NEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667755 4678888999999999998766443
No 54
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.18 E-value=3e+02 Score=22.32 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=36.2
Q ss_pred HHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 007091 465 LETALMEMVK--QDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (618)
Q Consensus 465 l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (618)
|+.+|.++=. .-...++.+++..||.++..+|+-++..-..=+..+-|=+++|.|
T Consensus 13 LE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 13 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444444322 233567788999999999999988765544445666666677765
No 55
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.61 E-value=3.9e+02 Score=23.34 Aligned_cols=79 Identities=11% Similarity=0.231 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007091 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMV--KQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQ 511 (618)
Q Consensus 434 ~~~~~~q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (618)
+.++.-++..|..|+--|...+ ..||.+|.++= ..-....+.+++..||.++..+|+-++.--..=+.++-
T Consensus 38 i~elrr~iq~L~~el~~l~~~~-------~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQC-------ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777776654433 34555555442 23345677889999999999999887654333355666
Q ss_pred HHHHHHHh
Q 007091 512 VLMKVEQE 519 (618)
Q Consensus 512 ~~~~~~~~ 519 (618)
|=|++|.|
T Consensus 111 vKl~Ld~E 118 (129)
T 3tnu_B 111 TKLALDVE 118 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66677665
No 56
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.90 E-value=84 Score=24.18 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007091 474 KQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (618)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (618)
+.+-...|..+|+.|+.+-++|+.-++.-+++=..+-|.|
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567778888888888888877766655544444444
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.61 E-value=89 Score=23.61 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007091 479 RQLSARIEQLEQEVAELQQSL 499 (618)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~ 499 (618)
..|.+|++.|.+++.||+.-|
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777654
No 58
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.08 E-value=1.1e+02 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=12.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 007091 474 KQDNRRQLSARIEQLEQEVAELQQ 497 (618)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~ 497 (618)
|++--..|.++|++|+.+-++|+.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544
No 59
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.01 E-value=3.6e+02 Score=22.42 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 007091 440 QVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQL-EQEVAELQQSLAD 501 (618)
Q Consensus 440 q~~~~~~~~~~ll~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 501 (618)
|+--|..+|---+|.+|.=--.+..|++.+..+..+. ...+..+ |.++++||+.+.+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~-----~~~~~~~ye~~i~~Lr~~i~~ 67 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG-----KSRLGDLYEEEMRELRRQVDQ 67 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCcHHHHHHHHHHHHHHHHH
Confidence 5666888888899998888888888999887665443 2334444 8888888877654
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.75 E-value=2.4e+02 Score=20.31 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHH
Q 007091 481 LSARIEQLEQEVAELQQSLADKREQESAMI-QVL 513 (618)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 513 (618)
|.+|+..||.-.+||..-+|--| -|..|| |||
T Consensus 8 LE~r~k~le~~naeLEervstLq-~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQ-NENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHh
Confidence 34444444444444444444333 356665 444
No 61
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.15 E-value=2.1e+02 Score=26.87 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHHhHhHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007091 447 ELCSLLEDKRSAVLRAE----ELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (618)
Q Consensus 447 ~~~~ll~e~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (618)
++-.|.++.+.....-. +...+|..++..|+-- .|+|++|-+|+++||+-+..
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~D--eakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPD--TAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 55556666655533211 2223344444333322 37889999999999886655
Done!