BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007092
         (618 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU
           PE=1 SV=1
          Length = 877

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/275 (58%), Positives = 208/275 (75%), Gaps = 5/275 (1%)

Query: 40  YDSGVCARRLMQYLYHQRQRPPDNTIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGV 99
           Y+ G+ A+RL QY+Y Q+ RP DN I +WRKFVAEY++P AKKRWC+S+Y + G    GV
Sbjct: 301 YEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMYGS-GRQTTGV 359

Query: 100 FPQAAMDAWQCDICGSKSGRGFEATFEVLPRLNEIKFGSGVIDELMFLDLPRECRFPSGI 159
           FPQ   D W C+IC  K GRGFEAT EVLPRL +IK+ SG ++EL+++D+PRE +  SG 
Sbjct: 360 FPQ---DVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPRESQNSSGQ 416

Query: 160 MMLEYGKAVQESVYEQLRIVREGQLRIIFTNDLKILSWEFCARRHEELLPRRLVAPQVNQ 219
           ++LEY KA QESV+E LR+VR+GQLRI+F+ DLKI SWEFCARRHEEL+PRRL+ PQV+Q
Sbjct: 417 IVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLIPQVSQ 476

Query: 220 LLQVAQKCQSTISESGSEGISQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRC 279
           L   AQK Q     + ++  +  +LQ N NM + + RQLAK+LE+  +NDLG++KRYVRC
Sbjct: 477 LGSAAQKYQQAAQNATTDS-ALPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRC 535

Query: 280 LQISEVVSSMKDLINFCWEQKVGPIEGLKSFPRHA 314
           LQISEVV+SMKDLI++  E + GPIE L  FPR  
Sbjct: 536 LQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRT 570


>sp|O74364|ADN1_SCHPO Adhesion defective protein 1 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=adn1 PE=3 SV=1
          Length = 391

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 121/291 (41%), Gaps = 45/291 (15%)

Query: 43  GVCARRLMQY---LYHQRQRPPDNTIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGV 99
           G    RL+QY   L    +    + I YWR+FV ++Y+ +   R+ +   D         
Sbjct: 18  GYGVLRLLQYNEQLMSGWESTMKDDIGYWRRFVHDFYTEKGTFRYNIDYKD--------- 68

Query: 100 FPQAAMDAWQCDICGSKSGRGFEATFEVLPRLNEIKFGSGVIDELMFLDLPRECRFPSGI 159
                          ++  + FE ++  LPR   + +   +      L   +E   P+  
Sbjct: 69  -------------SPNQEPKLFELSYAALPRFLYLSYCGKLKKMSFLLGNTKEFAIPNNG 115

Query: 160 MMLEYGKAVQESVYEQ-LRIVREGQLRIIFTND--LKILSWEFCARRHEELLPRRLVAPQ 216
             +E  +A     Y+  ++++  G LR  F     LK+ S EF A  H E L R L+   
Sbjct: 116 YFVESSRASILYQYQGGVQVIVSGHLRAHFFRAPLLKLDSLEFSAVGHSEYLLRELMT-N 174

Query: 217 VNQLLQVAQKCQSTISESG--SEGISQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSK 274
            +  L  ++  Q+ I   G  SE  S + +  NS+         +  L    +N+ G   
Sbjct: 175 ASLALSQSRPPQNQIQHDGVKSEDPSSESVNINSS---------SSLLPDSPVNEYGLEP 225

Query: 275 RYVRCLQISEVVSSMKDLINFCWEQKVGPIEGLKSFPRHATAA--KLQMQK 323
             +R ++I+E +S M+DLI F   Q+ GP   L  F   ATA   + QMQK
Sbjct: 226 HIMRFMEITETISGMRDLIAFTLAQRSGPTSALHKF---ATALQQQHQMQK 273


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,663,064
Number of Sequences: 539616
Number of extensions: 9597153
Number of successful extensions: 107849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 620
Number of HSP's that attempted gapping in prelim test: 53338
Number of HSP's gapped (non-prelim): 32331
length of query: 618
length of database: 191,569,459
effective HSP length: 124
effective length of query: 494
effective length of database: 124,657,075
effective search space: 61580595050
effective search space used: 61580595050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)