Query 007092
Match_columns 618
No_of_seqs 128 out of 179
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 82.2 0.29 9.9E-06 50.9 0.2 6 8-13 386-391 (449)
2 4b8c_D Glucose-repressible alc 76.1 0.64 2.2E-05 52.3 0.6 9 479-487 571-579 (727)
3 4b8c_D Glucose-repressible alc 65.6 1.3 4.5E-05 49.8 0.1 6 484-489 573-578 (727)
4 1nwd_B GAD, glutamate decarbox 13.8 80 0.0027 21.6 1.5 11 64-74 14-24 (28)
5 1uxx_X Xylanase U; carbohydrat 9.3 2.2E+02 0.0075 25.0 3.4 20 183-202 110-129 (133)
6 2qdz_A TPSB transporter FHAC; 9.0 1.7E+02 0.0059 30.9 3.0 20 3-22 6-25 (554)
7 1uy4_A Endo-1,4-beta-xylanase 8.0 2.9E+02 0.01 24.7 3.7 19 183-201 125-143 (145)
8 1kbh_B CREB-binding protein, n 7.4 1.8E+02 0.0062 23.4 1.7 30 477-506 6-36 (59)
9 1od3_A Putative xylanase; hydr 6.9 3.1E+02 0.011 25.4 3.4 20 183-202 147-166 (168)
10 2v4v_A GH59 galactosidase; hyd 6.7 3.1E+02 0.01 23.8 3.1 18 183-200 107-128 (129)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=82.15 E-value=0.29 Score=50.86 Aligned_cols=6 Identities=67% Similarity=0.722 Sum_probs=1.1
Q ss_pred HHHHHH
Q 007092 8 QLQQQQ 13 (618)
Q Consensus 8 ~~~~~~ 13 (618)
|.||||
T Consensus 386 ~~~~~~ 391 (449)
T 3iot_A 386 SFQQQQ 391 (449)
T ss_dssp HTC---
T ss_pred hhcccc
Confidence 333333
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=76.07 E-value=0.64 Score=52.27 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 007092 479 QMIQQLLQE 487 (618)
Q Consensus 479 ~~~~qllqe 487 (618)
.+|-..+.+
T Consensus 571 ~~l~~~l~~ 579 (727)
T 4b8c_D 571 GVLLDHLET 579 (727)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333433
No 3
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=65.61 E-value=1.3 Score=49.77 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=0.0
Q ss_pred HHHHHH
Q 007092 484 LLQEMS 489 (618)
Q Consensus 484 llqe~~ 489 (618)
|+.+|.
T Consensus 573 l~~~l~ 578 (727)
T 4b8c_D 573 LLDHLE 578 (727)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 334443
No 4
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=13.77 E-value=80 Score=21.60 Aligned_cols=11 Identities=55% Similarity=1.087 Sum_probs=9.3
Q ss_pred chhHHHHHHHH
Q 007092 64 TIAYWRKFVAE 74 (618)
Q Consensus 64 dI~YW~kFV~E 74 (618)
-|.-|.+||.|
T Consensus 14 mitawkkfvee 24 (28)
T 1nwd_B 14 MITAWKKFVEE 24 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46789999987
No 5
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=9.30 E-value=2.2e+02 Score=25.02 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=16.9
Q ss_pred EEEEEeCcccceEEEEEeec
Q 007092 183 QLRIIFTNDLKILSWEFCAR 202 (618)
Q Consensus 183 ~LRiiFd~~LKIEs~EF~~~ 202 (618)
.|++.|...+.|+||+|...
T Consensus 110 ~l~l~f~G~~nl~~~~f~~~ 129 (133)
T 1uxx_X 110 DLYLVFSGPVNIDYFIFDSN 129 (133)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEcC
Confidence 57788888999999999753
No 6
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=9.05 E-value=1.7e+02 Score=30.88 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007092 3 PLQRAQLQQQQQQQMQMRQQ 22 (618)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (618)
|-.+..+++|||+++++|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (554)
T 2qdz_A 6 PGARDLNRIDDRQRKEQLQR 25 (554)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHh
Confidence 44456666666555544433
No 7
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=7.99 E-value=2.9e+02 Score=24.75 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=16.2
Q ss_pred EEEEEeCcccceEEEEEee
Q 007092 183 QLRIIFTNDLKILSWEFCA 201 (618)
Q Consensus 183 ~LRiiFd~~LKIEs~EF~~ 201 (618)
.|++.|...+.|+||+|.-
T Consensus 125 ~lyl~f~g~~nl~~~~F~~ 143 (145)
T 1uy4_A 125 DIVLVFSGPVNVDNFIFSR 143 (145)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEeCCeEEEEEEEEe
Confidence 5778888889999999974
No 8
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=7.39 E-value=1.8e+02 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhcCCC-cccccCccCCCC
Q 007092 477 QQQMIQQLLQEMSNNNGG-VQQQSLSGQANG 506 (618)
Q Consensus 477 ~~~~~~qllqe~~nn~~~-~~~~~~~~~~~~ 506 (618)
.++.|+|||+-+++++.. .|||.+..-.+|
T Consensus 6 ~~~aLqqLl~tlksp~speqqqqvl~ILksN 36 (59)
T 1kbh_B 6 SPSALQDLLRTLKSPSSPQQQQQVLNILKSN 36 (59)
T ss_dssp STTHHHHHHHHHHSCTTTTCSTHHHHHHTTS
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Confidence 356799999999997763 556666654443
No 9
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A
Probab=6.90 E-value=3.1e+02 Score=25.36 Aligned_cols=20 Identities=10% Similarity=0.374 Sum_probs=16.8
Q ss_pred EEEEEeCcccceEEEEEeec
Q 007092 183 QLRIIFTNDLKILSWEFCAR 202 (618)
Q Consensus 183 ~LRiiFd~~LKIEs~EF~~~ 202 (618)
.|++.|...+.|+||+|...
T Consensus 147 dLylvf~G~~nldw~~F~~~ 166 (168)
T 1od3_A 147 DIVLVFSGPVNVDWFVFSKS 166 (168)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEeC
Confidence 57788888899999999753
No 10
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding module, CCCBM6; HET: XYP; 1.50A {Clostridium cellulolyticum}
Probab=6.70 E-value=3.1e+02 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.536 Sum_probs=0.0
Q ss_pred EEEEEeCcc----cceEEEEEe
Q 007092 183 QLRIIFTND----LKILSWEFC 200 (618)
Q Consensus 183 ~LRiiFd~~----LKIEs~EF~ 200 (618)
.|++.|... +.|+||+|.
T Consensus 107 ~l~l~f~g~~~~~~nld~~~f~ 128 (129)
T 2v4v_A 107 DVYLVFKGDSGYLFNLNWFTFS 128 (129)
T ss_dssp EEEEEEECSSSCCCEEEEEEEE
T ss_pred EEEEEEECCCCceEEEEEEEEE
Done!