Query 007092
Match_columns 618
No_of_seqs 128 out of 179
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 16:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007092.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007092hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oh0a_ d.17.4.3 (A:) Delta-5- 19.5 1.8E+02 0.013 22.0 9.7 69 124-198 47-115 (125)
2 d1uxxx_ b.18.1.10 (X:) Carbohy 18.4 39 0.0029 27.3 3.4 20 183-202 105-124 (125)
3 d1ohpa1 d.17.4.3 (A:1-125) Del 15.0 2.2E+02 0.016 21.1 9.4 68 123-198 46-113 (125)
4 d1od3a_ b.18.1.10 (A:) Putativ 14.6 56 0.004 26.4 3.4 19 183-201 112-130 (132)
5 d1uy4a_ b.18.1.10 (A:) Putativ 12.1 72 0.0053 25.9 3.4 19 183-201 112-130 (132)
6 d2fh1a3 d.109.1.1 (A:629-741) 10.9 29 0.0021 28.1 0.4 45 129-175 12-57 (113)
7 d2dsxa1 g.41.5.1 (A:1-52) Rubr 10.6 64 0.0046 23.5 2.2 34 88-122 12-50 (52)
8 d1svya_ d.109.1.1 (A:) Severin 9.8 35 0.0026 26.7 0.5 43 129-175 4-46 (102)
9 d1m98a2 d.17.4.6 (A:176-317) O 9.5 1.9E+02 0.014 24.2 5.4 114 43-201 19-132 (142)
10 d2hewf1 b.22.1.1 (F:58-185) Tu 9.3 1.6E+02 0.012 24.8 4.6 39 156-209 33-71 (128)
No 1
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=19.51 E-value=1.8e+02 Score=22.01 Aligned_cols=69 Identities=12% Similarity=0.010 Sum_probs=42.1
Q ss_pred cccchhHHHHHHhhcCcceEEEEeCCCcceecCCCcEEEEeCceEEEEEecCeEEEEEEEEEEEeCcccceEEEE
Q 007092 124 TFEVLPRLNEIKFGSGVIDELMFLDLPRECRFPSGIMMLEYGKAVQESVYEQLRIVREGQLRIIFTNDLKILSWE 198 (618)
Q Consensus 124 t~~vLPRfF~t~FeSGV~~~qL~Ld~prE~~LpNGsi~lE~~KAs~~y~Yegs~Vv~~G~LRiiFd~~LKIEs~E 198 (618)
+...|=+||...+..+-..... +.. -+..++...++. .......+|..+.+.|.-.+.||.+-||..+.
T Consensus 47 G~~~i~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~d~dGkI~~~~ 115 (125)
T d1oh0a_ 47 GREQIAAFYRQGLGGGKVRACL-TGP---VRASHNGCGAMP--FRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQ 115 (125)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEE-SSC---CEECSSSEEEEE--EEEEEESSSSEEEEEEEEEEEECTTSCEEEEE
T ss_pred cHHHHHHHHHHHHHhcccceEE-EEE---EEEcCCCEEEEE--EEEEeccccceEEEEEEEEEEECCCCeEEEEE
Confidence 4667888999888766443322 211 122333333322 11223445788889998889999999997654
No 2
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]}
Probab=18.42 E-value=39 Score=27.31 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.1
Q ss_pred EEEEEeCcccceEEEEEeec
Q 007092 183 QLRIIFTNDLKILSWEFCAR 202 (618)
Q Consensus 183 ~LRiiFd~~LKIEs~EF~~~ 202 (618)
+||+.|+-.+.|+||+|...
T Consensus 105 ~l~l~~~g~~Nid~~~F~~~ 124 (125)
T d1uxxx_ 105 DLYLVFSGPVNIDYFIFDSN 124 (125)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEeCCceEEEEEEEeC
Confidence 37888999999999999754
No 3
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=15.03 E-value=2.2e+02 Score=21.09 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=40.5
Q ss_pred EcccchhHHHHHHhhcCcceEEEEeCCCcceecCCCcEEEEeCceEEEEEecCeEEEEEEEEEEEeCcccceEEEE
Q 007092 123 ATFEVLPRLNEIKFGSGVIDELMFLDLPRECRFPSGIMMLEYGKAVQESVYEQLRIVREGQLRIIFTNDLKILSWE 198 (618)
Q Consensus 123 It~~vLPRfF~t~FeSGV~~~qL~Ld~prE~~LpNGsi~lE~~KAs~~y~Yegs~Vv~~G~LRiiFd~~LKIEs~E 198 (618)
.+...|-.||...+. ...++.+.. .....++..+++. ......+|-.+...|.-.+.|+.+-||..+.
T Consensus 46 ~G~~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~d~dGkI~~~~ 113 (125)
T d1ohpa1 46 SGTAAIREFYANSLK-LPLAVELTQ----EVRAVANEAAFAF---IVSFEYQGRKTVVAPIDHFRFNGAGKVVSMR 113 (125)
T ss_dssp ESHHHHHHHHHHHTS-SCCEEEECS----CCEEETTEEEEEE---EEEEEETTEEEEECCEEEEEECTTSCEEEEE
T ss_pred ccHHHHHHHHHHHhh-cCCceEEEE----EEEEecceEEEEE---EEEEecCCceEEEEEEEEEEECCCCeEEEEE
Confidence 345667777777666 333443321 1222344444432 1223335788888999999999999997764
No 4
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=14.59 E-value=56 Score=26.41 Aligned_cols=19 Identities=11% Similarity=0.398 Sum_probs=16.3
Q ss_pred EEEEEeCcccceEEEEEee
Q 007092 183 QLRIIFTNDLKILSWEFCA 201 (618)
Q Consensus 183 ~LRiiFd~~LKIEs~EF~~ 201 (618)
.||+.|+..+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nld~~~f~~ 130 (132)
T d1od3a_ 112 DIVLVFSGPVNVDWFVFSK 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEC
T ss_pred EEEEEEeCCceEEEEEEEe
Confidence 5778899899999999974
No 5
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=12.08 E-value=72 Score=25.90 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=16.4
Q ss_pred EEEEEeCcccceEEEEEee
Q 007092 183 QLRIIFTNDLKILSWEFCA 201 (618)
Q Consensus 183 ~LRiiFd~~LKIEs~EF~~ 201 (618)
.||+.|+..+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nid~~~F~~ 130 (132)
T d1uy4a_ 112 DIVLVFSGPVNVDNFIFSR 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEECCceEEEEEEEe
Confidence 5778899899999999974
No 6
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.91 E-value=29 Score=28.06 Aligned_cols=45 Identities=20% Similarity=0.097 Sum_probs=30.5
Q ss_pred hHHHHHHhhcCcceEEEEe-CCCcceecCCCcEEEEeCceEEEEEecC
Q 007092 129 PRLNEIKFGSGVIDELMFL-DLPRECRFPSGIMMLEYGKAVQESVYEQ 175 (618)
Q Consensus 129 PRfF~t~FeSGV~~~qL~L-d~prE~~LpNGsi~lE~~KAs~~y~Yeg 175 (618)
||+|+....+|...+..+. +..++...++..++|+|... +|++-|
T Consensus 12 prLf~~~~~~g~~~~~ev~~~~~q~dL~s~dvfILD~g~~--ifvW~G 57 (113)
T d2fh1a3 12 PRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQ--VFVWVG 57 (113)
T ss_dssp CEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSC--EEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEccCCCHHHCCCCceEEEECCCE--EEEEeC
Confidence 7777777667876666653 34456666788899999875 455544
No 7
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=10.64 E-value=64 Score=23.49 Aligned_cols=34 Identities=35% Similarity=0.811 Sum_probs=21.5
Q ss_pred ccCC-CCCCccccccccc----cccccccccCCCCCceeE
Q 007092 88 LYDN-VGHHALGVFPQAA----MDAWQCDICGSKSGRGFE 122 (618)
Q Consensus 88 ~~d~-~g~~s~Gvfp~~a----~d~w~cdic~sk~~K~FE 122 (618)
.||+ .|....|+=|.+. ++.|.|-+|+.. -..||
T Consensus 12 iYdp~~Gd~~~gi~pGT~F~~LP~~w~CP~C~a~-K~~F~ 50 (52)
T d2dsxa1 12 EYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS-KDAFE 50 (52)
T ss_dssp EECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB-GGGEE
T ss_pred EECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc-HHHhc
Confidence 3544 3555556655554 789999999864 23354
No 8
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=9.77 E-value=35 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=24.6
Q ss_pred hHHHHHHhhcCcceEEEEeCCCcceecCCCcEEEEeCceEEEEEecC
Q 007092 129 PRLNEIKFGSGVIDELMFLDLPRECRFPSGIMMLEYGKAVQESVYEQ 175 (618)
Q Consensus 129 PRfF~t~FeSGV~~~qL~Ld~prE~~LpNGsi~lE~~KAs~~y~Yeg 175 (618)
||+|+......|+-.++ +...+...+++.++|++.+. +|++.|
T Consensus 4 pRL~~v~G~~~~~~~ev--~~~~~~L~s~dvfILd~~~~--iyvW~G 46 (102)
T d1svya_ 4 PRLLHISGDKNAKVAEV--PLATSSLNSGDCFLLDAGLT--IYQFNG 46 (102)
T ss_dssp CEEEEEECTTSCEEEEE--CSSGGGCBTTSEEEEECSSE--EEEEEC
T ss_pred cEEEEEECCCceEEEEe--cCCHHHcCCCCeEEEEcCCE--EEEEEC
Confidence 56666543333333332 55566666677888998864 355544
No 9
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=9.49 E-value=1.9e+02 Score=24.25 Aligned_cols=114 Identities=9% Similarity=0.013 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHhcCCCccEEEEeeccCCCCCCccccccccccccccccccCCCCCceeE
Q 007092 43 GVCARRLMQYLYHQRQRPPDNTIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGVFPQAAMDAWQCDICGSKSGRGFE 122 (618)
Q Consensus 43 G~c~lRLlqfiehLs~rp~~ndI~YW~kFV~EFFSP~AvlR~tls~~d~~g~~s~Gvfp~~a~d~w~cdic~sk~~K~FE 122 (618)
|..---+..|++.++.. |.+- +.+.|+++|++. |+. .+.+
T Consensus 19 ~i~~~~V~~Y~~a~na~----D~d~----~~~lFa~Dav~~------~P~-------------------------~~p~- 58 (142)
T d1m98a2 19 GVTNSTVLQYMDNLNAN----DFDN----LISLFAEDGALQ------PPF-------------------------QKPI- 58 (142)
T ss_dssp TBCCHHHHHHHHHHHTT----CHHH----HHTTEEEEEEEE------CTT-------------------------SCCE-
T ss_pred cccHHHHHHHHHHHhcC----CHHH----HHHHcCCCeEEe------CCC-------------------------Cccc-
Confidence 33333477788888743 4333 456899998776 211 1233
Q ss_pred EcccchhHHHHHHhhcCcceEEEEeCCCcceecCCCcEEEEeCceEEEEEecCeEEEEEEEEEEEeCcccceEEEEEee
Q 007092 123 ATFEVLPRLNEIKFGSGVIDELMFLDLPRECRFPSGIMMLEYGKAVQESVYEQLRIVREGQLRIIFTNDLKILSWEFCA 201 (618)
Q Consensus 123 It~~vLPRfF~t~FeSGV~~~qL~Ld~prE~~LpNGsi~lE~~KAs~~y~Yegs~Vv~~G~LRiiFd~~LKIEs~EF~~ 201 (618)
.+...|-+||..-.. |+...... ...+. ..+|...++.. .....-+.|..+.++.-=+..||++-||-++++..
T Consensus 59 ~G~eaI~~f~~~~~~-~~~~~p~~--g~~~~-~~~g~~~v~vt-gkV~~~~~G~~~~vn~a~~F~ln~~GkI~~v~i~l 132 (142)
T d1m98a2 59 VGKENTLRFFREECQ-NLKLIPER--GVSEP-TEDGYTQIKVT-GKVQTPWFGGNVGMNIAWRFLLNPENKVFFVAIDL 132 (142)
T ss_dssp ESHHHHHHHHHHHCT-TCEEEEEE--EEEEE-CGGGCEEEEEE-EEEECTTTGGGCCEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCHHHHHHHHHHhcc-cceecccc--eeeEe-ecCCcEEEEEE-EEEecCCCCcceeeeeEEEEEECCCCcEEEEEeeh
Confidence 477888888886543 54443111 11111 23343333221 00111122334444444456788999999998765
No 10
>d2hewf1 b.22.1.1 (F:58-185) Tumor necrosis factor ligand superfamily member 4, OX40L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.30 E-value=1.6e+02 Score=24.77 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=26.6
Q ss_pred CCCcEEEEeCceEEEEEecCeEEEEEEEEEEEeCcccceEEEEEeecceecccc
Q 007092 156 PSGIMMLEYGKAVQESVYEQLRIVREGQLRIIFTNDLKILSWEFCARRHEELLP 209 (618)
Q Consensus 156 pNGsi~lE~~KAs~~y~Yegs~Vv~~G~LRiiFd~~LKIEs~EF~~~sHEEyIp 209 (618)
-|++++|.|+- .+++ .||+.|+++++|. ...|.-|+-+.
T Consensus 33 qnNSviI~CDG---------~Yli---sLKG~fsqelsi~---L~yrkg~~p~~ 71 (128)
T d2hewf1 33 QNNSVVIKCDG---------LYII---YLKGSFFQEVKID---LHFREDHNPIS 71 (128)
T ss_dssp ETTEEECCBCE---------EEEE---EEEEEESSCCCEE---EECCTTSCCEE
T ss_pred ecCcEEEecCc---------eEEE---EEeeeecceeEEE---EEEecCCCccc
Confidence 48888888854 4454 5899999999764 44555555543
Done!