BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007093
(618 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 332 bits (851), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 206/611 (33%), Positives = 329/611 (53%), Gaps = 40/611 (6%)
Query: 31 EEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNI 90
E ++K+LI D +S ++ V DL K G+T++ LI +DR P+ DVPA+YFV +++NI
Sbjct: 55 EIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENI 114
Query: 91 QRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN 150
I+ D + Y F++NF+SS+PR LLEDLA + + +I +V+DQYLDF+ E
Sbjct: 115 DIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPE 174
Query: 151 LFSLAQKSSYVQLNDPKAGDXXXXXXXXXXVNGLFCVLATLGVVPIIRCPRSGPAEMVAS 210
LFSL ++Y+ LNDPK + +GLF + T+ +PIIR + GPAE++A
Sbjct: 175 LFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAE 234
Query: 211 ALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLG 270
L KLRD +++ N+ + S +R +L I DRN + + H + Y+ V D+
Sbjct: 235 KLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASXFSHSWIYQCXVFDIFK 294
Query: 271 LKLNRLSV---QGEKG---------GMKSFELDSADPFWVANGWLEFPEVAVEIETQLNK 318
L N +++ E G K ++++ D FW N L FPE A +E LN
Sbjct: 295 LSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWXENSHLPFPEAAENVEAALNT 354
Query: 319 YKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLL 378
YK++ E+ ++TG + ++ D +T + V LPELT +K ID H NI LL
Sbjct: 355 YKEEAAEITRKTGVTNISDLDPNS-NNDTVQIQEVVKKLPELTAKKNTIDTHXNIFAALL 413
Query: 379 GEIKERSLDSYAKKENDMMIRGGIDRSELMGVLK-GKGSKM-DKLR-FAIIYLISSETIN 435
+++ +SLD++ + E D RS + +LK GK + + DKLR F ++YL S+ +
Sbjct: 414 SQLESKSLDTFFEVEQDP--GSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLP 471
Query: 436 QSEVEAVEAALRESEVDISAFQYVKKIKXXXXXXXXXXXXXXXXI-VDWAEK-------- 486
+ V+ VE +E++ DI+A +YV K++ D A K
Sbjct: 472 KDFVQNVENYFKENDYDINALKYVYKLREFXQLSNXSLQNKSLEDGSDSAFKPSNLTLSG 531
Query: 487 LYGQS-------ISAVTAGVKNLLSNDRQLALTRTVEALVE----GRPNPE-IDSYLMFD 534
+YG + + ++ +G+K LL + + +T V+A+ + + N E DSYL D
Sbjct: 532 IYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIXDPLNSSQKNLETTDSYLYID 591
Query: 535 PRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQ-QPVKHVIYGTTEILTG 593
P+ + S + + +++VF++GGGNY+EY +LQE A Q K V YG+T I T
Sbjct: 592 PKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVXYGSTAITTP 651
Query: 594 DEFVEQLALLG 604
EF+ +++ LG
Sbjct: 652 AEFLNEISRLG 662
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
Query: 1 MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHG 60
MA ++R++QT + RMLN N P + + E V+K+LIYDRF Q+I+SPL+ VK+LR G
Sbjct: 18 MAASIRERQTVALKRMLNFNVP-HVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMG 76
Query: 61 VTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLED 120
+TL+ L+ DR P+ DVPAVYFV +++NI R+ D LY+S++LNF S+I R+ LED
Sbjct: 77 ITLHLLLHSDRDPIRDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLED 136
Query: 121 LASGMLNSDSIQRISKVHDQYLD 143
+A+ L ++++ +++KV DQYL+
Sbjct: 137 IANAALAANAVTQVAKVFDQYLN 159
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 131/610 (21%), Positives = 253/610 (41%), Gaps = 97/610 (15%)
Query: 34 YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRI 93
+KI++ D F +LS + DL + G+T+ I K+R+PV + A+YF+ + +++
Sbjct: 32 WKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCF 91
Query: 94 IAD---ASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN 150
+ D S Y + ++ F+ P +L + + S SI+R +++ + F+ E
Sbjct: 92 LRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKASC--SKSIRRCKEIN---ISFIPQESQ 146
Query: 151 LFSLAQKSSYVQLNDPKAGDXXXXXXXXXXV-NGLFCVLATLGVVPIIRCPRSGP---AE 206
+++L ++ P + + + V ATL P +R +S P A
Sbjct: 147 VYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRY-KSKPLDNAS 205
Query: 207 MVASALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVH 266
+A +++KL D+ E G Q +L I DR F+ + H+ ++ + +
Sbjct: 206 KLAQLVEKKLEDYY-----KIDEKGLIKGKTQSQLL-IIDRGFDPVSTVLHELTFQAMAY 259
Query: 267 DVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEV 326
D+L ++ + + + G K L+ D WV + +AV +E ++ K K++
Sbjct: 260 DLLPIENDTYKYKTD-GKEKEAVLEEDDDLWVR---VRHRHIAVVLE-EIPKLMKEISST 314
Query: 327 NKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSL 386
K T G T L+ H ++ KQV+ H N+A + + K ++
Sbjct: 315 KKATEGKTSLSA-LTQLMKKMPHFRKQIS--------KQVV--HLNLAEDCMNKFK-LNI 362
Query: 387 DSYAKKENDMMIRGGIDRS---------ELMGVLKGKG-SKMDKLRFAIIYLISSETINQ 436
+ K E D+ + G D L+ VL K DK+R ++Y+ IN
Sbjct: 363 EKLCKTEQDLAL--GTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFG---ING 417
Query: 437 SEVEAVEAALRESEVDISAFQYVKKIKXXXXXXXXXXXXXXXXIVDWAEKLYGQSISAVT 496
+ E ++ + +++ + I +W+ G I +
Sbjct: 418 TTEENLDRLIHNVKIEDDS----------------------DMIRNWSH--LGVPIVPPS 453
Query: 497 AGVKNL---LSNDRQLALTRT---VEALVEGRPNPEIDSY-LMFDPRAPKSSSGS----- 544
K L S + L+R ++ ++E + +DS + R P +GS
Sbjct: 454 QQAKPLRKDRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSA 513
Query: 545 ------NHLKGPFKEA---IVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDE 595
N+L+ K I+F+IGG Y E E+++ + + VI G+T ILT +
Sbjct: 514 RQKPRTNYLELDRKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCE-VIIGSTHILTPRK 572
Query: 596 FVEQLALLGQ 605
++ + +L +
Sbjct: 573 LLDDIKMLNK 582
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/424 (20%), Positives = 172/424 (40%), Gaps = 47/424 (11%)
Query: 34 YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRI 93
+K+L+ D+ +LS + D+ G+T+ I+K R+P+ + AVY + S++++ +
Sbjct: 40 WKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSL 99
Query: 94 IA---DASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN 150
I+ D + Y + H+ F+ S P AL +L + S + + I + + + F+ E
Sbjct: 100 ISDFKDPPTAKYRAAHVFFTDSCPDALFNEL----VKSRAAKVIKTLTEINIAFLPYESQ 155
Query: 151 LFSLAQKSSYVQLNDPKAGDXXXXXXXXXXVNGLFCVLATLGVVPIIRCPRSGPAEMVAS 210
++SL S+ P + + ATL P +R + +
Sbjct: 156 VYSLDSADSFQSFYSPHKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLA 214
Query: 211 ALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLG 270
L Q D + + EG + A R L I DR F+ S + H+ ++ + +D+L
Sbjct: 215 QLIQDKLDAYKADDPTMGEGPDKA----RSQLLILDRGFDPSSPVLHELTFQAMSYDLLP 270
Query: 271 LKLNRLSVQGEKGG---MKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVN 327
++ + + G +K LD D W+A EV+ E+ L KD
Sbjct: 271 IENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSL----KDFSSSK 326
Query: 328 KRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLD 387
+ G D L + +P+ + H ++A + + ++D
Sbjct: 327 RMNTGEKTTMRD----------LSQMLKKMPQYQKELSKYSTHLHLAEDCMKHY-QGTVD 375
Query: 388 SYAKKENDMMIRGGID----------RSELMGVLKGKGSKMDKLRFAIIYL-----ISSE 432
+ E D+ + G D R+ + +L S DK+R ++Y+ I+ E
Sbjct: 376 KLCRVEQDLAM--GTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEE 433
Query: 433 TINQ 436
+N+
Sbjct: 434 NLNK 437
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/424 (20%), Positives = 172/424 (40%), Gaps = 47/424 (11%)
Query: 34 YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRI 93
+K+L+ D+ +LS + D+ G+T+ I+K R+P+ + AVY + S++++ +
Sbjct: 28 WKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSL 87
Query: 94 IA---DASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN 150
I+ D + Y + H+ F+ S P AL +L + S + + I + + + F+ E
Sbjct: 88 ISDFKDPPTAKYRAAHVFFTDSCPDALFNEL----VKSRAAKVIKTLTEINIAFLPYESQ 143
Query: 151 LFSLAQKSSYVQLNDPKAGDXXXXXXXXXXVNGLFCVLATLGVVPIIRCPRSGPAEMVAS 210
++SL S+ P + + ATL P +R + +
Sbjct: 144 VYSLDSADSFQSFYSPHKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLA 202
Query: 211 ALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLG 270
L Q D + + EG + A R L I DR F+ S + H+ ++ + +D+L
Sbjct: 203 QLIQDKLDAYKADDPTMGEGPDKA----RSQLLILDRGFDPSSPVLHELTFQAMSYDLLP 258
Query: 271 LKLNRLSVQGEKGG---MKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVN 327
++ + + G +K LD D W+A EV+ E+ L KD
Sbjct: 259 IENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSL----KDFSSSK 314
Query: 328 KRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLD 387
+ G D L + +P+ + H ++A + + ++D
Sbjct: 315 RMNTGEKTTMRD----------LSQMLKKMPQYQKELSKYSTHLHLAEDCMKHY-QGTVD 363
Query: 388 SYAKKENDMMIRGGID----------RSELMGVLKGKGSKMDKLRFAIIYL-----ISSE 432
+ E D+ + G D R+ + +L S DK+R ++Y+ I+ E
Sbjct: 364 KLCRVEQDLAM--GTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEE 421
Query: 433 TINQ 436
+N+
Sbjct: 422 NLNK 425
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 128/589 (21%), Positives = 238/589 (40%), Gaps = 50/589 (8%)
Query: 34 YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRI 93
+K+LI D+ ++S + ++ G+TL I++ R+P+ + AVY + ++++++ +
Sbjct: 25 WKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCL 84
Query: 94 IAD---ASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN 150
+AD Y H+ F+ + P L ++L S + + I + + + F+ E
Sbjct: 85 MADFQNPDNPQYRGAHIFFTEACPEELFKELC----KSTTARFIKTLKEINIAFLPYESQ 140
Query: 151 LFSLAQKSSY-VQLNDPKAGDXXXXXXXXXXVNGLFCVLATLGVVPIIRCPRSGPAEMVA 209
+FSL ++ V N +A C ATLG P +R
Sbjct: 141 IFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLC--ATLGEYPSVRYRSDFDENASF 198
Query: 210 SALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVL 269
+ L Q+ D + + EG R L I DR F+ + H+ ++ + +D+L
Sbjct: 199 AQLVQQKLDAYRADDPTMGEG----PQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLL 254
Query: 270 GLK---LNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEV 326
++ ++ G + K LD D WV + +AV + K K+ +E
Sbjct: 255 PIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVE---MRHQHIAVVSQNVTKKLKQFADE- 310
Query: 327 NKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSL 386
KR G D G K L + +P+ + H ++A + + ++ +
Sbjct: 311 -KRMGT-------AADKAG-IKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQH-V 360
Query: 387 DSYAKKENDMMIRGGID--------RSELMGVLKGKGSKMDKLRFAIIYLISSETINQSE 438
D K E D+ + D R+ + +L K S DK+R ++Y+I I++
Sbjct: 361 DKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEEN 420
Query: 439 V-EAVEAA--LRESEVDISAFQY--VKKIKXXXXXXXXXXXXXXXXIVDWAEKLYGQSIS 493
+ + V+ A E + I+ Q V I+ A+ Y +S
Sbjct: 421 LAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTY--QMS 478
Query: 494 AVTAGVKNLLSNDRQLAL-TRTVEALVEGRPNPEIDSYLMFD-PRAPKSSSGSNHLKGPF 551
T +K+++ + L TR L G P P + K +++ GP
Sbjct: 479 RWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGP- 537
Query: 552 KEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQL 600
I+F++GG +Y E S E+ + + VI G+T ILT + + L
Sbjct: 538 -RLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDL 585
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/421 (20%), Positives = 174/421 (41%), Gaps = 37/421 (8%)
Query: 34 YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRI 93
+K+L+ D+ ++S + ++ GVT+ + K RK + VYF++ +++N+ +
Sbjct: 25 WKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTEENLDYV 84
Query: 94 IADAS--ASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNL 151
I D + Y++ HL F S +P AL+ LAS + +++ + + + F+ E +
Sbjct: 85 IRDFADRTPTYEAAHLFFLSPVPDALMAKLAS----AKAVKYVKTLKEINTLFIPKEHRV 140
Query: 152 FSLAQKSSYVQLNDPKAGDXXXXXXXXXXVNGLFCVLATLGVVPIIR-CPRSGPAEMVAS 210
F+L + VQ G V L + T+ V PI+R S P +
Sbjct: 141 FTLNEPHGLVQY----YGSRSSSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMA 196
Query: 211 ALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLG 270
QK D +S+ + + G S F I DR +L + H+ Y+ +D+L
Sbjct: 197 MQLQKEIDMSVSQGLINAREGKLKSQF-----LILDRAVDLKSPLVHELTYQAAAYDLLN 251
Query: 271 LKLNRLSVQ----GEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEV 326
++ + S G + + L D W+ L EV ++++ +++ +
Sbjct: 252 IENDIYSYSTVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRL 311
Query: 327 NKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSL 386
G G L + LP+ E+ Q H +++ + ++
Sbjct: 312 QGLRDSQQGE--------GGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TI 362
Query: 387 DSYAKKENDMMI---RGGIDRSELMG-----VLKGKGSKMDKLRFAIIYLISSETINQSE 438
DS K E +++ + G + +G V+ + S DKLR ++ +++ + E
Sbjct: 363 DSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAKNGTSSHE 422
Query: 439 V 439
+
Sbjct: 423 L 423
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 87/418 (20%), Positives = 164/418 (39%), Gaps = 39/418 (9%)
Query: 34 YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRI 93
+K+LI D+ +S ++ G+TL I++ R+P+ + AVY + ++++++ +
Sbjct: 25 WKVLIVDQLSXRXVSACCKXHEIXSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCL 84
Query: 94 IAD---ASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN 150
AD Y H+ F+ + P L ++L S + + I + + + F+ E
Sbjct: 85 XADFQNPDNPQYRGAHIFFTEACPEELFKELC----KSTTARFIKTLKEINIAFLPYESQ 140
Query: 151 LFSLAQKSSY-VQLNDPKAGDXXXXXXXXXXVNGLFCVLATLGVVPIIRCPRSGPAEMVA 209
+FSL ++ V N +A C ATLG P +R
Sbjct: 141 IFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLC--ATLGEYPSVRYRSDFDENASF 198
Query: 210 SALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVL 269
+ L Q+ D + + EG R L I DR F+ + H+ ++ +D+L
Sbjct: 199 AQLVQQKLDAYRADDPTXGEG----PQKDRSQLLILDRGFDPISPLLHELTFQAXAYDLL 254
Query: 270 GLK---LNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEV 326
++ ++ G + K LD D WV V+ + +L ++ +
Sbjct: 255 PIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEXRHQHIAVVSQNVTKKLKQFADE---- 310
Query: 327 NKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSL 386
KR G D G K L + P+ + H ++A + ++ +
Sbjct: 311 -KRXGT-------AADKAG-IKDLSQXLKKXPQYQKELSKYSTHLHLAEDCXKQYQQH-V 360
Query: 387 DSYAKKENDMMIRGGID--------RSELMGVLKGKGSKMDKLRFAIIYLISSETINQ 436
D K E D+ D R+ + +L K S DK+R ++Y+I I++
Sbjct: 361 DKLCKVEQDLAXGTDADGEKIRDHXRNIVPILLDQKISAYDKIRIILLYIIHKGGISE 418
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 539 KSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVE 598
K +++ GP I+F++GG +Y E S E+ + + VI G+T ILT + +
Sbjct: 526 KDKGQASYKSGP--RLIIFVVGGISYSEXRSAYEVTQTAKNNWEVILGSTHILTPEGLLR 583
Query: 599 QL 600
L
Sbjct: 584 DL 585
>pdb|3IYU|X Chain X, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Y Chain Y, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Z Chain Z, Atomic Model Of An Infectious Rotavirus Particle
Length = 776
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 481 VDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS 540
VD+ L + V G N DR LA LVE E SY +F + +
Sbjct: 78 VDYWMLLAPTAAGVVVEGTNN---TDRWLA-----TILVEPNVTSETRSYTLFGTQEQIT 129
Query: 541 SSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKH 582
+ ++ + F + +V G+Y +YG LQ K +KH
Sbjct: 130 IANASQTQWKFID-VVKTTQNGSYSQYGPLQSTPKLYAVMKH 170
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 252 SVGIQHDFRYR-PLVHDVLGLK--LNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEV 308
++ +Q DF PL +++G+ +++L+V G++ G EL W+A+ +E P V
Sbjct: 599 ALSVQADFNVTTPL--EIIGIPKGISKLAVNGKELGYSVSELGD----WIAHPAIEIPHV 652
Query: 309 AVEIETQLNKYKKD 322
V T+L YK D
Sbjct: 653 QVPELTKLKWYKVD 666
>pdb|2P3I|A Chain A, Crystal Structure Of Rhesus Rotavirus Vp8 At 295k
pdb|2P3K|A Chain A, Crystal Structure Of Rhesus Rotavirus Vp8* At 100k
pdb|3TB0|A Chain A, Crystal Structure Of Rhesus Rotavirus Vp8 In Complex With
N- Glycolylneuraminic Acid
Length = 161
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 481 VDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS 540
VD+ L + V G N DR LA LVE E SY +F + +
Sbjct: 15 VDYWMLLAPTAAGVVVEGTNN---TDRWLATI-----LVEPNVTSETRSYTLFGTQEQIT 66
Query: 541 SSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKH 582
+ ++ + F + +V G+Y +YG LQ K +KH
Sbjct: 67 IANASQTQWKFID-VVKTTQNGSYSQYGPLQSTPKLYAVMKH 107
>pdb|1KQR|A Chain A, Crystal Structure Of The Rhesus Rotavirus Vp4 Sialic Acid
Binding Domain In Complex With
2-o-methyl-alpha-d-n-acetyl Neuraminic Acid
Length = 179
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 481 VDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS 540
VD+ L + V G N DR LA LVE E SY +F + +
Sbjct: 33 VDYWMLLAPTAAGVVVEGTNN---TDRWLATI-----LVEPNVTSETRSYTLFGTQEQIT 84
Query: 541 SSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKH 582
+ ++ + F + +V G+Y +YG LQ K +KH
Sbjct: 85 IANASQTQWKFID-VVKTTQNGSYSQYGPLQSTPKLYAVMKH 125
>pdb|1KRI|A Chain A, Nmr Solution Structures Of The Rhesus Rotavirus Vp4 Sialic
Acid Binding Domain Without Ligand
Length = 186
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 481 VDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS 540
VD+ L + V G N DR LA LVE E SY +F + +
Sbjct: 33 VDYWMLLAPTAAGVVVEGTNN---TDRWLATI-----LVEPNVTSETRSYTLFGTQEQIT 84
Query: 541 SSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKH 582
+ ++ + F + +V G+Y +YG LQ K +KH
Sbjct: 85 IANASQTQWKFID-VVKTTQNGSYSQYGPLQSTPKLYAVMKH 125
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 383 ERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAI-IYLISSETINQSEVEA 441
ER ++ YA K D+ R + R+E + +++G+G +K + ++ + +E ++Q
Sbjct: 304 ERFMERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEKDHIYLQLHHLPAEQLHQRLPGI 363
Query: 442 VEAALRESEVDIS 454
E A + VD++
Sbjct: 364 SETAKIFAGVDVT 376
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
Length = 485
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 310 VEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDK 369
V++ L+++ K + V K G A+ D DLI + L N E+ E++ DK
Sbjct: 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKK---EIIEKEAEADK 99
Query: 370 HTNIATVLLGEIKERSLDSYAKKENDMMIR 399
+ +G I S+ +EN+ ++R
Sbjct: 100 NLRSKINQVGNIVHESVVDSQDEENNELVR 129
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 310 VEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDK 369
V++ L+++ K + V K G A+ D DLI + L N E+ E++ DK
Sbjct: 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKK---EIIEKEAEADK 99
Query: 370 HTNIATVLLGEIKERSLDSYAKKENDMMIR 399
+ +G I S+ +EN+ ++R
Sbjct: 100 NLRSKINQVGNIVHESVVDSQDEENNELVR 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,881,888
Number of Sequences: 62578
Number of extensions: 687245
Number of successful extensions: 1555
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1527
Number of HSP's gapped (non-prelim): 26
length of query: 618
length of database: 14,973,337
effective HSP length: 105
effective length of query: 513
effective length of database: 8,402,647
effective search space: 4310557911
effective search space used: 4310557911
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)