Query 007093
Match_columns 618
No_of_seqs 162 out of 969
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 18:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1301 Vesicle trafficking pr 100.0 4E-107 9E-112 833.5 48.9 606 1-610 8-621 (621)
2 KOG1300 Vesicle trafficking pr 100.0 9.5E-90 2.1E-94 721.8 47.8 554 3-605 1-586 (593)
3 PF00995 Sec1: Sec1 family; I 100.0 4.3E-90 9.3E-95 777.9 43.9 536 34-600 1-564 (564)
4 COG5158 SEC1 Proteins involved 100.0 1.2E-85 2.6E-90 705.8 50.7 556 2-606 1-580 (582)
5 KOG1299 Vacuolar sorting prote 100.0 2.9E-84 6.4E-89 657.2 43.3 537 3-602 1-547 (549)
6 KOG1302 Vacuolar sorting prote 100.0 2.5E-82 5.3E-87 668.3 39.7 534 4-600 16-599 (600)
7 PF12327 FtsZ_C: FtsZ family, 46.8 41 0.00089 28.4 4.9 38 551-588 36-76 (95)
8 PF14071 YlbD_coat: Putative c 43.4 22 0.00047 31.6 2.7 39 344-382 64-104 (124)
9 cd00564 TMP_TenI Thiamine mono 36.3 36 0.00078 32.1 3.4 45 553-603 150-194 (196)
10 PRK05581 ribulose-phosphate 3- 34.2 44 0.00095 32.5 3.7 44 554-603 171-214 (220)
11 PRK08883 ribulose-phosphate 3- 33.6 44 0.00096 32.9 3.6 45 553-603 167-211 (220)
12 PLN02334 ribulose-phosphate 3- 32.7 42 0.00091 33.2 3.3 44 554-603 175-218 (229)
13 PHA02937 hypothetical protein; 30.2 3E+02 0.0065 27.4 8.3 68 302-380 183-250 (310)
14 KOG2884 26S proteasome regulat 30.0 1.6E+02 0.0035 28.8 6.5 58 548-606 104-164 (259)
15 PRK00043 thiE thiamine-phospha 28.1 55 0.0012 31.5 3.2 41 554-600 161-201 (212)
16 PRK10039 hypothetical protein; 22.3 1.7E+02 0.0036 26.2 4.7 43 559-601 80-125 (127)
17 TIGR01163 rpe ribulose-phospha 21.6 91 0.002 29.9 3.4 43 554-602 166-208 (210)
18 TIGR00693 thiE thiamine-phosph 21.1 88 0.0019 29.8 3.1 37 554-596 153-189 (196)
19 TIGR00282 metallophosphoestera 20.0 1.2E+02 0.0026 30.9 3.9 40 552-595 145-185 (266)
No 1
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-107 Score=833.54 Aligned_cols=606 Identities=51% Similarity=0.821 Sum_probs=548.1
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEE
Q 007093 1 MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAV 80 (618)
Q Consensus 1 ~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aI 80 (618)
|+.|||+.|-.+|.+||++++|++.......+-|||||+|..+..+||++++++||++||||++..|.+.|+|+|+++||
T Consensus 8 ~~~slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPAV 87 (621)
T KOG1301|consen 8 AAASLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPAV 87 (621)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCeE
Confidence 57899999999999999999998776666689999999999999999999999999999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHhhcCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCCcc
Q 007093 81 YFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSY 160 (618)
Q Consensus 81 y~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~~f 160 (618)
|||+||.||+++|++|+++..|.+||++|++++++..+|.||....+.|....|.+|++.++||+.+|+|+|+|.++++|
T Consensus 88 YFV~Pt~eNid~i~~Dl~~~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~~~~ 167 (621)
T KOG1301|consen 88 YFVSPTEENIDRIIQDLSKGLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQNSF 167 (621)
T ss_pred EEeCCchHhHHHHHHHHHHhhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhcccccc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCchHHHHHHHHHHHHHHHh-hcCCCCCCCCCCCCCCCC
Q 007093 161 VQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLL-SKNNLFSEGGNFASSFQR 239 (618)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~a~~va~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 239 (618)
..+++|+..+.+++..+++||++||++|.++|.+|.|||.+|++|++||++|.+||++++. ..+++|...+.+ ...+|
T Consensus 168 ~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~aAEmvA~kL~qKLRd~l~d~k~~lft~~~~~-~~~~R 246 (621)
T KOG1301|consen 168 HAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGGAAEMVARKLDQKLRDNLRDTKNNLFTMDGGG-AGFQR 246 (621)
T ss_pred hhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCCHHHHHHHHHHHHHHHHhHhhcccceeccCcc-cCCCC
Confidence 9999999999899999999999999999999999999999999999999999999999987 456666654322 23689
Q ss_pred ceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC--CceeEEecCCCChhHHhccCCCHHHHHHHHHHHHH
Q 007093 240 PILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK--GGMKSFELDSADPFWVANGWLEFPEVAVEIETQLN 317 (618)
Q Consensus 240 ~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~--~~~~~~~L~~~D~l~~~~R~~~i~~v~~~l~~~~~ 317 (618)
|.|+|+||++|++||+-|.||||||+||+|+++.|.|+++.++ +.+|.++|+.+|+||..+.+..|++|++.+.+++.
T Consensus 247 PvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~~~~~~k~yDld~~D~fW~~n~~~pFP~VAE~Ve~eL~ 326 (621)
T KOG1301|consen 247 PVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESESKRKKKKSYDLDPNDKFWRRNKGSPFPEVAENVEEELE 326 (621)
T ss_pred ceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccccCCCCccccCCCccHHHHhcCCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876 55789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Q 007093 318 KYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMM 397 (618)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~ 397 (618)
+|+++.++++++.|.++.++...+. ..+...+.++|+.||++.++++.+++|++||.++++.+++|+++.++++|++++
T Consensus 327 ~Yk~~~~ei~r~~G~sg~~e~~~~~-~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~IkeR~lD~ff~~E~~~~ 405 (621)
T KOG1301|consen 327 SYKNEEAEIKRKMGLSGEDEGAIDE-LNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIKERKLDDFFEVEKKIM 405 (621)
T ss_pred HHHhhHHHHHhhcCCCccccccccc-ccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhcccc
Confidence 9999999999987776555444433 445559999999999999999999999999999999999999999999999998
Q ss_pred hcCCCChHHHHHHh-c-cCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhhhhhcc--cC
Q 007093 398 IRGGIDRSELMGVL-K-GKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLAS--AN 473 (618)
Q Consensus 398 ~g~~~~~~~i~~~l-~-~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~~~~~~--~~ 473 (618)
+ ...+ ..+++++ . ...+++||||++++|.++...+++.++++++..+.+.|++..+++|+++++.+..+... +.
T Consensus 406 ~-~~l~-~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~et~~~s~le~~e~al~e~~~d~~Al~yvkr~k~~~~~~s~~~~~ 483 (621)
T KOG1301|consen 406 S-TTLD-RSLLDILEDGEAGTPEDKLRLFIIYYLSTETVPQSDLEAVENALTEAGCDLNALKYVKRLKEITKMSSATSAY 483 (621)
T ss_pred c-cccc-HHHHHHHhcccCCChHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccccc
Confidence 8 3344 3555555 3 57899999999999999999999999999999999999999999999999988755432 12
Q ss_pred CCCCCchhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCC-CCCCCCCCc
Q 007093 474 SASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSG-SNHLKGPFK 552 (618)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~ 552 (618)
....+.+..++++++.++.+.+.+||+|++|.++.-+++|+||.+++++.++++++|.|+||+..++++. ....+++.+
T Consensus 484 ~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~~DPk~~k~~~~~~~~~r~~f~ 563 (621)
T KOG1301|consen 484 SGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLYFDPKLSKGGSSSLPIKRQPFQ 563 (621)
T ss_pred cCCcccHHHHHHHHhhccHHHHHhhHHhcCcccccCcHHHHHHHhhCCCCCccccceEeeccccccCCCccccccccchh
Confidence 2235567788889999999999999999999999999999999999988777778899999998876432 123567789
Q ss_pred eEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhcccCCCC
Q 007093 553 EAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLG 610 (618)
Q Consensus 553 ~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~~~~~~ 610 (618)
+.|||||||++|-||..|.+|+++.+..++||||+|+|+||.+|++++..|+.++.++
T Consensus 564 eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~~~~~ 621 (621)
T KOG1301|consen 564 EAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLKMGSN 621 (621)
T ss_pred heEEEEEcCcCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhcccccCC
Confidence 9999999999999999999999886667899999999999999999999999987653
No 2
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-90 Score=721.81 Aligned_cols=554 Identities=22% Similarity=0.399 Sum_probs=455.6
Q ss_pred chHHHHHHHHH-HHHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEEE
Q 007093 3 LNLRQKQTECI-TRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVY 81 (618)
Q Consensus 3 ~~l~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy 81 (618)
++|++++++.+ .++++ . .....|||||+|+.+++++|+||+|++++++||++++.|++.|+|+|.+.|||
T Consensus 1 m~l~~l~~~kil~~v~~-~--------~k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY 71 (593)
T KOG1300|consen 1 MGLKELVKKKILEDVLR-V--------EKKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIY 71 (593)
T ss_pred CchHHHHHHHHHHHhcc-c--------CCCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEE
Confidence 46788888886 55666 2 24569999999999999999999999999999999999999999999999999
Q ss_pred EEccCHHHHHHHHHHhh--cCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCCc
Q 007093 82 FVQASQQNIQRIIADAS--ASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSS 159 (618)
Q Consensus 82 ~i~Pt~~~i~~i~~d~~--~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~~ 159 (618)
|++|+.+++++++.||. .|.|+.+|+||++.+++.++..|.. +...+.|.++.+++++|+|+|+++|+++.|++
T Consensus 72 ~i~pt~~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k----s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~ 147 (593)
T KOG1300|consen 72 FITPTEESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK----SRAAKKIKTLKEINLAFIPYESQVFTLDSPDA 147 (593)
T ss_pred EecCchhhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh----hhHhhhhhhheecccccceecceeeeecChhh
Confidence 99999999999999994 5799999999999999999999987 67889999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCC--chHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 007093 160 YVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSG--PAEMVASALDQKLRDHLLSKNNLFSEGGNFASSF 237 (618)
Q Consensus 160 f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~--~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (618)
|..+|.++ ........+..+|++|+++|.++|++|.|||.... .|..++..+..++++.+....+.++.+ +..
T Consensus 148 ~~~~y~~~-~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~va~~l~~~~~~~~~~~~~~----p~~ 222 (593)
T KOG1300|consen 148 FLQLYSPD-NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKVAAKLWDAYKAYKPSIGNG----PQK 222 (593)
T ss_pred HHHhcCch-hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHHHHHHHHHHHhcccccCCC----CCc
Confidence 99999887 33456688999999999999999999999998652 355789999999997776433333333 235
Q ss_pred CCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeC--CCC-ceeEEecCCCChhHHhccCCCHHHHHHHHHH
Q 007093 238 QRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQG--EKG-GMKSFELDSADPFWVANGWLEFPEVAVEIET 314 (618)
Q Consensus 238 ~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~--~~~-~~~~~~L~~~D~l~~~~R~~~i~~v~~~l~~ 314 (618)
+++.|||+||++|+++||+|+||||||+||+++|++|.+.+.. ..| +++++.|+++|++|.++||+||++|.+.|++
T Consensus 223 ~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~~kk~vllde~D~~WveLRH~HIadvse~l~~ 302 (593)
T KOG1300|consen 223 TRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGEKKKEVLLDEDDDLWVELRHKHIADVSERLTK 302 (593)
T ss_pred ccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCCccceeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998854 333 3688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 007093 315 QLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKEN 394 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq 394 (618)
++++|.........+ +...+++|+.++|++||+|+++..+++.|++||++|++.++. .+.+++.+||
T Consensus 303 ~~k~f~~~nk~~~~~------------~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQ 369 (593)
T KOG1300|consen 303 KMKNFSSKNKRLQTK------------SKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQ 369 (593)
T ss_pred HHHHHHhhhhhhhcc------------ccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999997763221111 114789999999999999999999999999999999999999 9999999999
Q ss_pred hhhhcCCCChHHH-------HHHh-ccCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 007093 395 DMMIRGGIDRSEL-------MGVL-KGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLN 466 (618)
Q Consensus 395 ~i~~g~~~~~~~i-------~~~l-~~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~ 466 (618)
+++.|.|..++.+ ++.+ .......|++|++++|.+..+|+.+.++. ++++..|+..+....+.++..+|
T Consensus 370 DLa~G~Daeg~kik~~~~~~~p~l~~~~~~~~dklR~Illy~~~~~Gi~ee~l~---kL~~~~~i~~~~~~ii~~~~~~~ 446 (593)
T KOG1300|consen 370 DLATGTDAEGEKIKDSLRDLLPILLESNVRLLDKLRLILLYIFERKGIIEENLA---KLLQHAGISVEEMQIIQNLHILG 446 (593)
T ss_pred HHhccCCcccccHHHHHHhhhhhhcccCchHHHHHHHHHHHHHhcCCccHHHHH---HHhcccCCCchHHHHHhhHHHhC
Confidence 9999977654333 3333 35788999999999999999999987775 66899999888899999998888
Q ss_pred hhhcccCCCCCC-chhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCC-CCCC-
Q 007093 467 VSLASANSASRN-NIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPK-SSSG- 543 (618)
Q Consensus 467 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~-~~~~- 543 (618)
..... +++..+ ..... + .+. .... +=.++|+|.+..++|++++++|+ .+.|||+..+... +++.
T Consensus 447 ~~~~~-~~~~~k~~~~~r--k------er~-~e~t-yqlSR~~P~Ik~ilE~~i~~~Ld--~~~fp~~~~~s~~~~~~~~ 513 (593)
T KOG1300|consen 447 VPVTK-DSFLLKFDPPER--K------ERV-EEQT-YQLSRWVPVIKNILEKLIEDRLD--KKHFPYLNDTSETSSGSAA 513 (593)
T ss_pred Ccccc-CcccccCCCCcc--c------ccc-ccce-eeeeeeehHHHHHHHHHHhccCC--hhhCccccCCccccccCcc
Confidence 54331 221100 00000 0 011 0000 00246789999999999999997 5999998765421 1111
Q ss_pred ----C--CC-------CCCCCceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhcc
Q 007093 544 ----S--NH-------LKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQ 605 (618)
Q Consensus 544 ----~--~~-------~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~ 605 (618)
. .+ .+.+.+++|||||||+||+|+|++|+++++. +++|+||||+|++|.+||+.|..+..
T Consensus 514 ~Sar~~~~~~~k~~~~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~--~~EViiGS~~iltP~~fL~~lk~~~~ 586 (593)
T KOG1300|consen 514 TSARYGHPLSNKTPSAFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKL--NREVIIGSDHILTPTKFLDDLKLLKF 586 (593)
T ss_pred ccccccCcccccCcchhhccCceEEEEEeCCccHHHHHHHHHHHHhh--CceEEECCcccCCHHHHHHHHhhccc
Confidence 0 00 1124578999999999999999999999987 79999999999999999999994333
No 3
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=4.3e-90 Score=777.93 Aligned_cols=536 Identities=30% Similarity=0.492 Sum_probs=412.7
Q ss_pred eEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEEEEEccCHHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 007093 34 YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSI 113 (618)
Q Consensus 34 ~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~ 113 (618)
|||||+|+.++++||++|++++|+++||++++.|+++|+|+|+++|||||+|+.+++++|++|++++.|++|||+|++.+
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~~~~~~~~i~f~~~~ 80 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKNPPYRSYHIFFTPRV 80 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHSTSBSEEEEEESS--
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHhcccccEEEEEehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCCccccccC-CCCCchHHHHHHHHHHHHHHHHHHHcC
Q 007093 114 PRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLND-PKAGDREIEEIIERIVNGLFCVLATLG 192 (618)
Q Consensus 114 ~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~~f~~~~~-~~~~~~~~~~~l~~ia~~L~~l~~~~g 192 (618)
++.+++.|++ .++.+.|.++.|+++||+|+|+|+|||++|++|..+|. .. ..+.++++|++|+++|.++|
T Consensus 81 ~~~~~~~l~~----~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~-----~~~~l~~~a~~L~~l~~~~g 151 (564)
T PF00995_consen 81 SESLLEILAE----SGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDG-----DESSLQRIADSLLSLQLTLG 151 (564)
T ss_dssp -HHHHHHHHH----SCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTG-----HHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHhhhh----cCccceecccccceeEEEEccchhhhhcccchHHHHhcccc-----chhHHHHHHHHHHHHHHHhC
Confidence 9999999999 78999998899999999999999999999999999987 33 35789999999999999999
Q ss_pred CccEEEeCCCCchHHHHHHHHHHHHHHHhh---cCCCCCCCCCCCCCCCCceEEEecCCCccccccccccchhhhhhhhh
Q 007093 193 VVPIIRCPRSGPAEMVASALDQKLRDHLLS---KNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVL 269 (618)
Q Consensus 193 ~~P~Iry~~g~~a~~va~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~ 269 (618)
.+|.|||.++..|+.||++|.+++++.... .++.+.. ....++++|||+||++|++||||||||||||+||+|
T Consensus 152 ~~p~I~~~g~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~d~~ 227 (564)
T PF00995_consen 152 EIPNIRYKGNSNAKRVAELLQKKLQENEDNFSSSNPDFPP----GSSFERPLLIILDRSVDLITPLLHQWTYEGLIDDLF 227 (564)
T ss_dssp ---EEEE-TTCHHHHHHHHHHHHHHHHHTTHCHCSTTTT-----SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHHHHS
T ss_pred CCCeEEEeCchhHHHHHHHHHHHhhhccccccccccccCC----ccccCCceEEEecccccccchhhcCceeeeEHHhhh
Confidence 999999986558999999999888875411 1111111 123456899999999999999999999999999999
Q ss_pred cccCCeEEeeCCC--Cc-eeEEecCCCChhHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccC
Q 007093 270 GLKLNRLSVQGEK--GG-MKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGN 346 (618)
Q Consensus 270 ~I~~~~v~~~~~~--~~-~~~~~L~~~D~l~~~~R~~~i~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (618)
||++|.|+++.+. ++ ++++.||++|++|+++||+||++|++.|.++++++++++ +..+ .+.++
T Consensus 228 ~i~~~~v~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~~~-------------~~~~~ 293 (564)
T PF00995_consen 228 GINNNKVEIPDEINSGENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EKSR-------------SKSKS 293 (564)
T ss_dssp TEBTTEEEEEECSSSSECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H-----------------STTT
T ss_pred hhcCCEeccccCCCccccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cccc-------------chhhH
Confidence 9999999997643 22 378999999999999999999999999999999998664 2111 12579
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhcCCCCh---HHHHHHh-ccCCCchhHHH
Q 007093 347 TKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDR---SELMGVL-KGKGSKMDKLR 422 (618)
Q Consensus 347 ~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~~---~~i~~~l-~~~~~~~d~LR 422 (618)
+++|++||++||+++++++.++.|++||++|++.+++++|.+++++||+|++|.+.+. +.++++| ....+..++||
T Consensus 294 ~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~~~~~~~~d~LR 373 (564)
T PF00995_consen 294 IQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELINSRKISIEDKLR 373 (564)
T ss_dssp HHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHHSTTSTHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhhccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999976653 4589999 68999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhhhhhccc--CCCC--CCchhhhhHHhhcccchhhhhc
Q 007093 423 FAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASA--NSAS--RNNIVDWAEKLYGQSISAVTAG 498 (618)
Q Consensus 423 Ll~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~s~~~~~ 498 (618)
|+|||+++. |+++++++.+++.+.+.|+..+++.++.+|+++|....+. ..+. +..+..+ .+..........++
T Consensus 374 Ll~L~sl~~-g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 451 (564)
T PF00995_consen 374 LLCLYSLTN-GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNSSNFQSIRKKLNLI-SKFNDKNDKNNPKD 451 (564)
T ss_dssp HHHHHHHHH--HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTTS--CTTC-TT----HHTTCCCSSSSCSC
T ss_pred HHHHHHHHh-cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCccchhhhccccccc-cccccccccccccc
Confidence 999999998 9999999999996655555555799999999998654431 0011 1112111 01000000111223
Q ss_pred ccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCC----CCCCC---------CCCCCCceEEEEEEcCccHH
Q 007093 499 VKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS----SSGSN---------HLKGPFKEAIVFMIGGGNYM 565 (618)
Q Consensus 499 ~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~----~~~~~---------~~~~~~~~viVf~iGGvTy~ 565 (618)
..+.+ .+|+|+++|+||.++++.++. .+.||++++..... .+... ....+++++||||||||||+
T Consensus 452 ~~~~~-~~y~Pli~rlve~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~vGGvTy~ 529 (564)
T PF00995_consen 452 ISYVY-SGYAPLIVRLVEDLIKGKLDK-EEEFPYLDPKPKNLNGSSFSLRSSKPSRSKTQPSNKPRKRVIVFFVGGVTYS 529 (564)
T ss_dssp CCSTT-CT---HHHHHHHHHHTTHSHH-TTTSEBSSTCC-----SSSSSS-------------S-SSEEEEEEETEBEHH
T ss_pred ccchh-cccccHHHHHHHHHhhccCCc-ccccccccccccccCCCCcccccccccccccccccCCCCEEEEEEEcCCcHH
Confidence 33333 347899999999999988741 37899988765210 00000 01234577999999999999
Q ss_pred hhHHHHHHHHhcCCCceEEEccccccChHHHHHHH
Q 007093 566 EYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQL 600 (618)
Q Consensus 566 Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l 600 (618)
|+++||+++++.+.+++|+||||+|+||++||++|
T Consensus 530 Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 530 EIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp HHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 99999999987633499999999999999999986
No 4
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-85 Score=705.80 Aligned_cols=556 Identities=30% Similarity=0.523 Sum_probs=447.2
Q ss_pred cchHHHHHHHHHHHHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEEE
Q 007093 2 ALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVY 81 (618)
Q Consensus 2 ~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy 81 (618)
+++++++|+++|.+++.+++| ...|||||+|+.+..+||+++++++|++|||++++.|+++|+|.++.+|||
T Consensus 1 ~~dl~e~q~~~i~~~i~~v~~--------~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~~~aiy 72 (582)
T COG5158 1 NMDLLELQKNKILDEIFLVQP--------ANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISDLPAIY 72 (582)
T ss_pred CccHHHHHHHHHHHHHHhcCC--------CcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCCCCEEE
Confidence 478999999999999997754 347999999999999999999999999999999999999999999999999
Q ss_pred EEccCHHHHHHHHHHhhc--CCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCCc
Q 007093 82 FVQASQQNIQRIIADASA--SLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSS 159 (618)
Q Consensus 82 ~i~Pt~~~i~~i~~d~~~--~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~~ 159 (618)
||+||.+++++|++|+.+ |.|..||+.|++.+.+.+++.+++ .+.+..|..|.++++||+++|+++|++++|..
T Consensus 73 ~v~pt~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e----s~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~ 148 (582)
T COG5158 73 FVRPTKENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE----SGVFEKILSVYEIYLDFFVLESDLFSLNLPES 148 (582)
T ss_pred EEcCchHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh----cCchhheeeeeeeecceEEechHhHhhcCchh
Confidence 999999999999999998 999999999999999999999998 89999999999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 007093 160 YVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQR 239 (618)
Q Consensus 160 f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (618)
|...+.+... ..+..++.+|+++|.++|.+|.|||.+|+.|+++|+++..++++......+.+-.. .+.+
T Consensus 149 ~~~~~~~~~~-----~~~~~~v~gl~S~~~slg~~P~Ir~~~~~~a~~~ak~l~~~~~~~~~~~~~~~~~~-----~~~~ 218 (582)
T COG5158 149 FLESSLPSTT-----EALIKIVNGLFSLCVSLGRIPIIRYSGGKNAEHMAKKLSDEIRNELSINFDGVVSK-----NPLR 218 (582)
T ss_pred hhhhcCCCch-----HHHHHHHhhHHHHHhhcCCcceEEecCCchHHHHHHHHHHHHHHHHHhhccccccc-----CCCC
Confidence 9988877631 34449999999999999999999999999999999999988886654321211111 2368
Q ss_pred ceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCC--CCceeEEec-CCCChhHHhccCCCHHHHHHHHHHHH
Q 007093 240 PILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGE--KGGMKSFEL-DSADPFWVANGWLEFPEVAVEIETQL 316 (618)
Q Consensus 240 ~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~--~~~~~~~~L-~~~D~l~~~~R~~~i~~v~~~l~~~~ 316 (618)
++|||+||+.|++|||+|+||||||+||++++++|.|+++.. .|..|++.+ +.+|++|+++||+||++|++.|.+.+
T Consensus 219 ~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~~ 298 (582)
T COG5158 219 PILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNGPEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKKLA 298 (582)
T ss_pred ceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEecccccccccceeccCCcccHhHHHhccCchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999532 344444554 58999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 007093 317 NKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDM 396 (618)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i 396 (618)
++++.+.+...+. +.+++.+|++||.+||++++.++.+.+|++||++|++.++++.|++++++||++
T Consensus 299 ~~l~~~~~~~~~~-------------~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l 365 (582)
T COG5158 299 KELKTKAQLRHKE-------------NAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNL 365 (582)
T ss_pred HHHHHHHhhhhhh-------------hcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999987765532 247999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChHHHHHHh---ccCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhhhhhccc-
Q 007093 397 MIRGGIDRSELMGVL---KGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASA- 472 (618)
Q Consensus 397 ~~g~~~~~~~i~~~l---~~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~~~~~~~- 472 (618)
.++.+. ...+.++| +......+||||+|||+|+++|+ .++.+.+ +++..-|+..+++.++.+|+.+|.+..+.
T Consensus 366 ~~~~~~-~~~i~Dli~~l~~~~~E~~klRllilysL~~~~~-~~~~~~~-~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~ 442 (582)
T COG5158 366 STGNDV-KSDISDLIELLESGVEEDDKLRLLILYSLTKDGL-IKDIDEL-RLLRIQGYGIEALNFFQRLKELGFLTLKDS 442 (582)
T ss_pred hcCCcc-hhhHHHHHHHHhcCchHHHHHHHHHHHHHhcCcc-hhHHHHH-HHHHhcCCCHHHHHHHHHHHHHhhhhhhcc
Confidence 988754 45566655 33333336999999999999997 5555544 45556677777899999999998653221
Q ss_pred --CCC--C-CCchhhhhHHhhc-----ccchhhhhcccccccccccchHHHHHHHHHcCCCCC----CCC-cccccCCCC
Q 007093 473 --NSA--S-RNNIVDWAEKLYG-----QSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNP----EID-SYLMFDPRA 537 (618)
Q Consensus 473 --~~~--~-~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~----~~~-~~p~~~~~~ 537 (618)
.+. + ...++.|.. .++ +++.....+| .+|.|...++...++.+.+.. ..+ .|-..+|+.
T Consensus 443 ~~~s~~~g~~d~l~~~~n-~y~~s~~~~~~~~~~~v~-----~~~iP~~k~~~~~~~~~~~~~~~~s~~~~s~~~~~~k~ 516 (582)
T COG5158 443 KTISLKRGDKDSLFQWFN-TYSLSREHQGVPDLENVY-----SGLIPLKKDIPIDLLVRRLFEPLKSSQQQSLRLSRPKG 516 (582)
T ss_pred cccccccCCcccccCccc-ccccccccCCCchHHHHH-----Hhhcchhcccchhhhhhhhcccccchhccceeeccccc
Confidence 110 1 122333321 121 1122222222 345666677666666654321 012 222223321
Q ss_pred CCCCCCCCCCCCCCceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhccc
Q 007093 538 PKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQK 606 (618)
Q Consensus 538 ~~~~~~~~~~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~~ 606 (618)
++. ..++.++++++|||+||+||.|++++++++.+. ++++|++|||.|++|.+||+++..++..
T Consensus 517 -~~~---~~~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~-~~~~ii~Gst~iltp~e~l~~v~~~~~~ 580 (582)
T COG5158 517 -RSR---SNKKIPQQRILVFVIGGVTYEELRVLYELNESQ-NSVRIIYGSTEILTPAEFLDEVKRLGGS 580 (582)
T ss_pred -ccc---cccccccceEEEEEECCeehHHHHHHHHHHhhc-CCeeEEEcCCceecHHHHHHHHHHhccc
Confidence 111 013456788999999999999999999999875 2499999999999999999999988653
No 5
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-84 Score=657.20 Aligned_cols=537 Identities=25% Similarity=0.406 Sum_probs=454.6
Q ss_pred chHHHHHHHHHHHHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccC-CCCCCCCCCEEE
Q 007093 3 LNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDK-DRKPVHDVPAVY 81 (618)
Q Consensus 3 ~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~-~r~~~~~~~aIy 81 (618)
|+|-...|.+|.+|+.. +++|.|||++|+.|..++|.+++.|+|+++.|.+++.|++ .|+.+.+..||+
T Consensus 1 Mnlv~~~k~yi~~m~~~----------~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khLkcvv 70 (549)
T KOG1299|consen 1 MNLVSSSKKYIEKMIQE----------SGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHLKCVV 70 (549)
T ss_pred CchHHHHHHHHHHHHHh----------cCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCceEEE
Confidence 45677889999999984 4679999999999999999999999999999999999986 888999999999
Q ss_pred EEccCHHHHHHHHHHhhcCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCCccc
Q 007093 82 FVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYV 161 (618)
Q Consensus 82 ~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~~f~ 161 (618)
||+||++||+++++++++|+|..|||+|++.+++..++.||+ +|....|+.|.|+++||+++++++|||++|+.|.
T Consensus 71 fiRPT~eniq~L~~ELrnPry~~Y~lyFsN~i~ks~le~LAe----sD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~ 146 (549)
T KOG1299|consen 71 FIRPTPENIQLLIEELRNPRYGEYHLYFSNIISKSDLERLAE----SDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFE 146 (549)
T ss_pred EeccChHHHHHHHHHhcCCcceeEEEEEeccCCHHHHHHHHh----cchHHHHHHHHHHHHhhhccCCceeecCCchhhc
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999887
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCC-chHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCc
Q 007093 162 QLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSG-PAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRP 240 (618)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~-~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (618)
...+ |+ ...+.++.+||.+++.+++..|.|||+.++ .|+++|+.+...+. .+..+|.... ....|
T Consensus 147 ~~~~---w~---~~~l~R~~~GI~AllLsLK~~P~IRYq~~S~~~~~lAe~vs~~i~----~E~~lFdfr~----~~~~p 212 (549)
T KOG1299|consen 147 SSLN---WD---PGALTRSTQGIIALLLSLKKKPVIRYQTSSRACKRLAEEVSYRIT----KESTLFDFRR----TDSPP 212 (549)
T ss_pred cccc---cC---hhhhhHhHhhHHHHHHhccCCCeeEeecCCHHHHHHHHHHHHHHh----hhhhhccccc----CCCCC
Confidence 6432 22 467999999999999999999999999885 47888887776654 3457777652 23568
Q ss_pred eEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCCC---ceeEEecC-CCChhHHhccCCCHHHHHHHHHHHH
Q 007093 241 ILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKG---GMKSFELD-SADPFWVANGWLEFPEVAVEIETQL 316 (618)
Q Consensus 241 ~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~~---~~~~~~L~-~~D~l~~~~R~~~i~~v~~~l~~~~ 316 (618)
+||||||+.|++||||+|||||||+||++||++|+|.+...++ .-++++|+ .+|+||++.++.+|+|++..|+..+
T Consensus 213 ~LLiLDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv 292 (549)
T KOG1299|consen 213 LLLILDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSKVPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLV 292 (549)
T ss_pred eEEEEecCCCCCchhhhHHHHHHHHHHHhccccCEEeeccCCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999965432 23678898 8999999999999999999998888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 007093 317 NKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDM 396 (618)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i 396 (618)
.+|+... +.+ ++..++.+|+.|+..+|++++....+++|+.+..++++.++.++|.+++|+||++
T Consensus 293 ~~fq~k~-~~~--------------~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l 357 (549)
T KOG1299|consen 293 SEFQFKT-KTN--------------SNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNL 357 (549)
T ss_pred HHHHHhh-hhc--------------hhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8887632 111 1367999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC--CChHHHHHHhc-cCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhhhhhcc-c
Q 007093 397 MIRGG--IDRSELMGVLK-GKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLAS-A 472 (618)
Q Consensus 397 ~~g~~--~~~~~i~~~l~-~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~~~~~~-~ 472 (618)
++.++ .+.+.|.++|. ...+..|++||+|||+|.+...++.++..|-++|..-|... -..+.-|.+.++...+ .
T Consensus 358 ~c~~~~~~~~~~i~~LL~n~~vs~~d~lrLv~lYaLr~e~~~~~~~~~L~~~l~~~~~~~--~~~v~~ll~~~G~~~R~~ 435 (549)
T KOG1299|consen 358 ACNGDHGADFNDIKKLLQNEKVSEIDRLRLVALYALRYERHPPNELRQLPQILREQGPKK--PELVPFLLKYAGLHVRQG 435 (549)
T ss_pred HhcCcchhhHHHHHHHHcCCcccHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCc--chhHHHHHHhcCcccccc
Confidence 99543 35678888995 57999999999999999999999999999988887777631 2223333344433322 3
Q ss_pred CCCCCCchhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCc
Q 007093 473 NSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFK 552 (618)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 552 (618)
+.++......+++++.. =++|+.|++ .+|+|.+.++++++++|++. .-.||++.+.. .+.+++
T Consensus 436 dlf~~~~~v~i~R~~~k-----glkgvENVy-tQH~P~lk~~l~~~~rgRl~--~~~~p~l~~~~---------s~~~pq 498 (549)
T KOG1299|consen 436 DLFGPNDLVPIARRFIK-----GLKGVENVY-TQHQPLLKSTLEDLFRGRLK--EIDYPFLGSQT---------SRDRPQ 498 (549)
T ss_pred cccCcchhHHHHHHHhh-----ccCcchhhh-hccCHHHHHHHHHHHhcccc--cCCCccccccc---------ccCCCc
Confidence 33444445555544321 156788887 47899999999999999985 25699986521 456788
Q ss_pred eEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHh
Q 007093 553 EAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLAL 602 (618)
Q Consensus 553 ~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~ 602 (618)
.||||||||+||+|.+.++++... +++.+|+.|+|.|+|.++|++++..
T Consensus 499 ~IIVfivGGaTYEEa~~V~~~N~t-n~g~rvvLgGttvlntk~f~~di~~ 547 (549)
T KOG1299|consen 499 DIIVFIVGGATYEEARVVHELNAT-NPGVRVVLGGTTVLNTKSFIDEIMA 547 (549)
T ss_pred eEEEEEECCccHHHHHHHHHHhcC-CCceEEEEcceEEechHHHHHHHhc
Confidence 999999999999999999999644 6799999999999999999999864
No 6
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-82 Score=668.28 Aligned_cols=534 Identities=20% Similarity=0.318 Sum_probs=439.6
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCC-CCCCEEEE
Q 007093 4 NLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPV-HDVPAVYF 82 (618)
Q Consensus 4 ~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~-~~~~aIy~ 82 (618)
.+|+..++.|.+.|. +.+|.|.||+|+.++++|+++.++|.|++|||..+..++.++.|. ...+.|||
T Consensus 16 ~lq~~a~~eL~~lLd-----------s~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~~vy~ 84 (600)
T KOG1302|consen 16 GLQEVARRELISLLD-----------SLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQVVYF 84 (600)
T ss_pred HHHHHHHHHHHHHHh-----------cCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCeEEEE
Confidence 488999999999999 468999999999999999999999999999999888998776444 45678999
Q ss_pred EccCHHHHHHHHHHhhc----CCCCeEEEEcCCC---CChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEec
Q 007093 83 VQASQQNIQRIIADASA----SLYDSFHLNFSSS---IPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLA 155 (618)
Q Consensus 83 i~Pt~~~i~~i~~d~~~----~~y~~~~l~f~~~---~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~ 155 (618)
++|+.++++.|++++.+ ..-+.||++|.|+ +|+.++|. +++++.+ .+.++.|+++|+|.|++||+
T Consensus 85 ~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~~P~~~~~c~~~Lee-------~gv~~~v-~~~e~~~~~lpld~DllSlE 156 (600)
T KOG1302|consen 85 VRPRLENMQLIAEHVENVQRDGFTRDYHVIFVPRRSSLCETLLEE-------EGVYGLV-LVEEQILDLLPLDGDLLSLE 156 (600)
T ss_pred EcCchHHHHHHHHHHhhhhhchhcceeEEEEeccHHHHHHHHHHh-------ccccccc-ccchhhhhhccccccchhcc
Confidence 99999999999999985 3567899999985 34444444 8999777 49999999999999999999
Q ss_pred CCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 007093 156 QKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFAS 235 (618)
Q Consensus 156 ~~~~f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~~ 235 (618)
.|++|.++|..++ ++.+..+|++|.+++..+|.+|.| |+.|..|+++++++.+.-++. ..-..+ .
T Consensus 157 l~~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v-~g~G~~ak~~~~l~~~l~~e~-----~t~n~~----~ 221 (600)
T KOG1302|consen 157 LPNSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKV-YGKGECAKRVWELLKKLEREE-----ATENNG----D 221 (600)
T ss_pred chHHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcce-eeccHHHHHHHHHHHHHhhcc-----ccccCC----C
Confidence 9999999886554 367999999999999999999999 888999999998885543322 111111 1
Q ss_pred CCCCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC---------C----ceeEEecCCCChhHHhccC
Q 007093 236 SFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK---------G----GMKSFELDSADPFWVANGW 302 (618)
Q Consensus 236 ~~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~---------~----~~~~~~L~~~D~l~~~~R~ 302 (618)
.++++++|++||++|++||||||+||+||+||+|||++|.|++|.+. + ..+...++..|++|+++|+
T Consensus 222 ~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deIy~eiR~ 301 (600)
T KOG1302|consen 222 RPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEIYAEIRN 301 (600)
T ss_pred ccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHHHHHHHH
Confidence 25788999999999999999999999999999999999999997631 1 1245556699999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhh
Q 007093 303 LEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIK 382 (618)
Q Consensus 303 ~~i~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~ 382 (618)
+||+.|++.+++++++++.+++.-. +.+++.||++||++||.++++++.++.|+++|+.+++.+.
T Consensus 302 k~f~~v~~~lsk~ak~l~~~~~~r~---------------~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~ 366 (600)
T KOG1302|consen 302 KHFNAVGPLLSKKAKELQAQYETRR---------------QAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVK 366 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875321 2579999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhhcCCCC--hHHHHHHhccCCCchhHHHHHHHHHHhcCCCChHHHHHHHH-HHHhCCCCchhHHHH
Q 007093 383 ERSLDSYAKKENDMMIRGGID--RSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEA-ALRESEVDISAFQYV 459 (618)
Q Consensus 383 ~~~l~~~~~~Eq~i~~g~~~~--~~~i~~~l~~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~-~l~~~g~~~~~~~~l 459 (618)
...|.+.+.+||+++.|.+.+ .+.|+|+|....+...+|||+||.|++.+|+++++++.+++ ++|.||+++ +..+
T Consensus 367 ~~~f~~~l~lE~ell~~~d~~k~~~~IeElI~~~~~~~~vLRLicL~Slt~~Gl~~k~l~~~rr~~lqsYG~eh--l~tl 444 (600)
T KOG1302|consen 367 NEDFRKLLKLEHELLEGNDSDKDFDYIEELIYQEVPLNNVLRLICLLSLTCNGLKPKDLDHYRREYLQSYGYEH--LLTL 444 (600)
T ss_pred hHHHHHHHHHHHHHHhccCcccchHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHH--HHHH
Confidence 989999999999999998765 36788899889999999999999999999999999999997 889999875 8999
Q ss_pred HHHHHhhhhhcccCCC------CCCchhhhhHHh----------hcccchhhhhcccccccccccchHHHHHHHHHcCCC
Q 007093 460 KKIKSLNVSLASANSA------SRNNIVDWAEKL----------YGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRP 523 (618)
Q Consensus 460 ~~l~~l~~~~~~~~~~------~~~~~~~~~~~~----------~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l 523 (618)
.||+++|.+..+.... ++..+..|++++ .+.|++|+|+|| .|+++||||.+++..+
T Consensus 445 ~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl~l~~~~~d~~~p~DiaYvySgy--------~PLs~rlve~~l~~~~ 516 (600)
T KOG1302|consen 445 QNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTLPLVDEENDESNPSDIAYVYSGY--------APLSCRLVEDLLKRRG 516 (600)
T ss_pred HHHHHcCCcccccCCCcchhhHHHHHHHHHHhcCCCcCCcccccCcccchhhhccc--------ccHHHHHHHHHhcccc
Confidence 9999999654432221 123455554332 356889999876 6899999999999854
Q ss_pred CCCCCcc--------cccCCCCC-CCCCCCCC-CCCCCceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccCh
Q 007093 524 NPEIDSY--------LMFDPRAP-KSSSGSNH-LKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTG 593 (618)
Q Consensus 524 ~~~~~~~--------p~~~~~~~-~~~~~~~~-~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~ 593 (618)
+. +.| |+++.... ..+..+.+ ..+..+.++|||+|||||+||+|+|+|++.. +++|+|+||+++||
T Consensus 517 w~--~~~~~i~~l~g~~~e~~~~~~~~~~~~~~~~g~~R~~lVff~GG~T~~EIAalr~l~~~~--~~~f~i~Tt~ling 592 (600)
T KOG1302|consen 517 WQ--ELYSKIRNLPGPHFEEVTWTPSDIASKNNSPGALRVTLVFFLGGCTYAEIAALRFLAKLE--GYRFLIATTGLING 592 (600)
T ss_pred hh--hhHHHHccCCCCchhhcccChhhhcccccCCCCcceEEEEEECCccHHHHHHHHHHHhhc--CceEEEEeccccch
Confidence 32 222 11111000 00001111 2234678999999999999999999999865 89999999999999
Q ss_pred HHHHHHH
Q 007093 594 DEFVEQL 600 (618)
Q Consensus 594 ~~fl~~l 600 (618)
.++|+.+
T Consensus 593 ~~ll~~~ 599 (600)
T KOG1302|consen 593 SSLLEAI 599 (600)
T ss_pred HHHHHhh
Confidence 9999875
No 7
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=46.80 E-value=41 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=28.2
Q ss_pred CceEEEEEEcC--ccHHhhHHHH-HHHHhcCCCceEEEccc
Q 007093 551 FKEAIVFMIGG--GNYMEYGSLQ-ELAKRQQPVKHVIYGTT 588 (618)
Q Consensus 551 ~~~viVf~iGG--vTy~Ei~al~-~l~~~~~~~~~iiigsT 588 (618)
-+.++|-|.|| +|+.|+..+- .+.++...+.+|++|.+
T Consensus 36 A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 36 AKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp -SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred hceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 37899999998 7899998775 45555567889999976
No 8
>PF14071 YlbD_coat: Putative coat protein
Probab=43.39 E-value=22 Score=31.58 Aligned_cols=39 Identities=8% Similarity=0.178 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHhh
Q 007093 344 IGNTKHLMNAVNS--LPELTERKQVIDKHTNIATVLLGEIK 382 (618)
Q Consensus 344 ~~~~~e~~~~v~~--lp~~~~~~~~l~~H~~i~~~i~~~~~ 382 (618)
...+..|..+|++ +-++++...+++.-++.+..++..++
T Consensus 64 ~d~~~ql~~~vKkmD~nq~q~hl~~~sqai~~vQ~~l~qFq 104 (124)
T PF14071_consen 64 NDWMSQLLSMVKKMDVNQMQKHLNNVSQAIGSVQQVLSQFQ 104 (124)
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466778888876 34555544444444444544444443
No 9
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=36.33 E-value=36 Score=32.11 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=30.5
Q ss_pred eEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhh
Q 007093 553 EAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALL 603 (618)
Q Consensus 553 ~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l 603 (618)
.+-|++.||++-..+..+... |.+.+..++.+....+..+.+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~~------Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLAA------GADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHHc------CCCEEEEehHhhcCCCHHHHHHHH
Confidence 356899999997655554332 788888888888655555555443
No 10
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=34.19 E-value=44 Score=32.53 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=31.5
Q ss_pred EEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhh
Q 007093 554 AIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALL 603 (618)
Q Consensus 554 viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l 603 (618)
..|.+.||+|-..++.+.. .+.++++.++.|++.++.-+.+..+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~------~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE------AGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred ceEEEECCCCHHHHHHHHH------cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 5677889999966555543 2899999999999766655554444
No 11
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.59 E-value=44 Score=32.94 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=31.0
Q ss_pred eEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhh
Q 007093 553 EAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALL 603 (618)
Q Consensus 553 ~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l 603 (618)
.+.|.+.||+|-..+..+.+- |.++++.++.|.+.+++-+.+..+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~a------GAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAEA------GADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred CeeEEEECCCCHHHHHHHHHc------CCCEEEEeHHHhCCCCHHHHHHHH
Confidence 367888999996665555332 899999999998655544444443
No 12
>PLN02334 ribulose-phosphate 3-epimerase
Probab=32.67 E-value=42 Score=33.18 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=31.7
Q ss_pred EEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhh
Q 007093 554 AIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALL 603 (618)
Q Consensus 554 viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l 603 (618)
+-|.++||+|-.-++.+... +.++++.++.|.+.++.-+.+..+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~a------Gad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAEA------GANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred CcEEEeCCCCHHHHHHHHHc------CCCEEEEChHHhCCCCHHHHHHHH
Confidence 35899999998876666443 788888888898766655554444
No 13
>PHA02937 hypothetical protein; Provisional
Probab=30.18 E-value=3e+02 Score=27.36 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 007093 302 WLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGE 380 (618)
Q Consensus 302 ~~~i~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~ 380 (618)
+..+.-....+-+.++.+.++.+.++..+ + ..+++.++.-|+++..++.+....+..-.++..++-+.
T Consensus 183 DetiKmlln~~~e~AK~L~~el~nfr~ek-------I----eITs~nDii~flKkis~LLe~sal~~~l~~li~~~ded 250 (310)
T PHA02937 183 DETIKMLLNVLLELAKILMKELQNFREEK-------I----EITSANDIILFLKKISQLLEDSALFTHLANLIDEIDED 250 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------e----eeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555544321 1 15788999999999999998876665555555554443
No 14
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=1.6e+02 Score=28.78 Aligned_cols=58 Identities=22% Similarity=0.164 Sum_probs=40.0
Q ss_pred CCCCceEEEEEEcCccHHhhHHHHHHHHhcCC---CceEEEccccccChHHHHHHHHhhccc
Q 007093 548 KGPFKEAIVFMIGGGNYMEYGSLQELAKRQQP---VKHVIYGTTEILTGDEFVEQLALLGQK 606 (618)
Q Consensus 548 ~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~---~~~iiigsT~i~n~~~fl~~l~~l~~~ 606 (618)
+.++.+++||+---+.++|- .|-.+++++.+ .++||.-+-.=-+++.+-.-+.-++-+
T Consensus 104 k~~~~riVvFvGSpi~e~ek-eLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~ 164 (259)
T KOG2884|consen 104 KNQKQRIVVFVGSPIEESEK-ELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK 164 (259)
T ss_pred CCcceEEEEEecCcchhhHH-HHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC
Confidence 34457888888888999998 77777776533 347777777766766665555555444
No 15
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=28.12 E-value=55 Score=31.54 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=28.3
Q ss_pred EEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHH
Q 007093 554 AIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQL 600 (618)
Q Consensus 554 viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l 600 (618)
+-|+..||+|-..++.+... |.+.+++++.|.+..+..+.+
T Consensus 161 ~~v~a~GGI~~~~i~~~~~~------Ga~gv~~gs~i~~~~d~~~~~ 201 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLEA------GADGVAVVSAITGAEDPEAAA 201 (212)
T ss_pred CCEEEECCcCHHHHHHHHHc------CCCEEEEeHHhhcCCCHHHHH
Confidence 67899999997665544332 889888888887654443333
No 16
>PRK10039 hypothetical protein; Provisional
Probab=22.31 E-value=1.7e+02 Score=26.21 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=28.0
Q ss_pred EcCccHHhhHHHHHHHHhcCC--CceEEEc-cccccChHHHHHHHH
Q 007093 559 IGGGNYMEYGSLQELAKRQQP--VKHVIYG-TTEILTGDEFVEQLA 601 (618)
Q Consensus 559 iGGvTy~Ei~al~~l~~~~~~--~~~iiig-sT~i~n~~~fl~~l~ 601 (618)
=||.|=-|.|+++|++..... .+.+++. .+.-++-++.++.+.
T Consensus 80 EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 80 EGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 499999999999999864321 1244444 444566666666553
No 17
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.59 E-value=91 Score=29.93 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=30.0
Q ss_pred EEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHh
Q 007093 554 AIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLAL 602 (618)
Q Consensus 554 viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~ 602 (618)
+-|++.||+|-.- +.++.+ .+.+.++.++.|+++.+.-+.+..
T Consensus 166 ~~i~v~GGI~~en---v~~l~~---~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 166 ILIEVDGGVNDDN---ARELAE---AGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred ceEEEECCcCHHH---HHHHHH---cCCCEEEEChHHhCCCCHHHHHHH
Confidence 4578999999644 444432 288989999999987766555443
No 18
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=21.13 E-value=88 Score=29.79 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=27.0
Q ss_pred EEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHH
Q 007093 554 AIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEF 596 (618)
Q Consensus 554 viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~f 596 (618)
+-|+.+||+|-..++.+.. . +.+.+..++.|.+.++-
T Consensus 153 ~pv~a~GGI~~~~~~~~~~----~--G~~gva~~~~i~~~~dp 189 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVLA----A--GADGVAVVSAIMQAADP 189 (196)
T ss_pred CCEEEECCcCHHHHHHHHH----c--CCCEEEEhHHhhCCCCH
Confidence 4599999999766555432 2 88999998888865543
No 19
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=20.01 E-value=1.2e+02 Score=30.86 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=30.2
Q ss_pred ceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEcc-ccccChHH
Q 007093 552 KEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGT-TEILTGDE 595 (618)
Q Consensus 552 ~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigs-T~i~n~~~ 595 (618)
.-+||-|-+|.|+. -.++.++- ..+++.++|| ||+.|++.
T Consensus 145 d~IIVd~HaeatsE-K~a~~~~l---dg~vsaVvGtHtHV~TaD~ 185 (266)
T TIGR00282 145 DLIFVDFHAETTSE-KNAFGMAF---DGYVTAVVGTHTHVPTADL 185 (266)
T ss_pred CEEEEEeCCCCHHH-HHHHHHHh---CCCccEEEeCCCCCCCCcc
Confidence 57899999999985 55565554 4589999998 57776653
Done!