Query 007093
Match_columns 618
No_of_seqs 162 out of 969
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mqs_A SLY1 protein, SLY1P; SM 100.0 6E-107 2E-111 923.6 48.8 608 2-613 16-671 (671)
2 1epu_A S-SEC1; parallel beta-s 100.0 2E-101 8E-106 869.7 42.0 557 3-605 1-590 (591)
3 2xhe_A UNC18; exocytosis, exoc 100.0 6E-100 2E-104 864.1 52.4 553 3-607 2-619 (650)
4 1dn1_A NSEC1, syntaxin binding 100.0 3E-100 9E-105 854.4 45.4 558 2-609 3-591 (594)
5 3c98_A Syntaxin-binding protei 100.0 8E-100 3E-104 858.9 44.6 557 3-608 16-602 (606)
6 3puk_A Syntaxin-binding protei 100.0 5E-100 2E-104 851.5 38.3 549 2-607 7-584 (592)
7 1y9j_A SEC1 family domain cont 100.0 3.6E-32 1.2E-36 249.5 9.9 142 1-143 18-159 (159)
8 3he4_B Synzip5; heterodimeric 41.0 67 0.0023 21.0 5.0 33 345-377 3-35 (46)
9 1y0e_A Putative N-acetylmannos 20.3 79 0.0027 29.3 4.1 45 553-603 175-220 (223)
10 1tqx_A D-ribulose-5-phosphate 17.9 74 0.0025 30.1 3.2 44 553-602 173-219 (227)
No 1
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=5.7e-107 Score=923.61 Aligned_cols=608 Identities=35% Similarity=0.592 Sum_probs=491.9
Q ss_pred cchHHHHHHHHHHHHhccCCCCCCC-CCC---------CCcceEEEEEccccccccccccChHHHhhcccceeecccCCC
Q 007093 2 ALNLRQKQTECITRMLNLNQPVNAT-GTA---------NEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDR 71 (618)
Q Consensus 2 ~~~l~~~~~~~l~~~l~~~~~~~~~-~~~---------~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r 71 (618)
..|||++|+++|.+||+++++.... ... ..++|||||+|+.++++||++|++++|+++||++++.|+.+|
T Consensus 16 ~~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~r 95 (671)
T 1mqs_A 16 DISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDR 95 (671)
T ss_dssp CCCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCC
T ss_pred cccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCCC
Confidence 4689999999999999998752111 111 368999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEccCHHHHHHHHHHhhcCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCe
Q 007093 72 KPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNL 151 (618)
Q Consensus 72 ~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~l 151 (618)
+|+|+++|||||+|+.+||++|++|+++++|++|||+|++.+|+.++++||+...++++.+.|.+|.|+++||+|+|+|+
T Consensus 96 ~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple~dl 175 (671)
T 1mqs_A 96 SPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPEL 175 (671)
T ss_dssp CCEEEEEEEEEECSCHHHHHHHHHHHHHTCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTTE
T ss_pred CCCCCceEEEEeCCCHHHHHHHHHHhhhcccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeeccCCE
Confidence 99999999999999999999999999999999999999999999999999986555789999989999999999999999
Q ss_pred EEecCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCchHHHHHHHHHHHHHHHhhcC-CCCCCC
Q 007093 152 FSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKN-NLFSEG 230 (618)
Q Consensus 152 fsl~~~~~f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~a~~va~~l~~~l~~~~~~~~-~~~~~~ 230 (618)
|||++|++|..+|.+.+|+...++.++++|++|+++|.++|.+|.|||++|+.|++||++|+++++++..... ++|+..
T Consensus 176 fsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~~a~~va~~L~~~l~~~~~~~~~~lf~~~ 255 (671)
T 1mqs_A 176 FSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTSTL 255 (671)
T ss_dssp EECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred EEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCChHHHHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999988777667789999999999999999999999999999999999999999998865432 445332
Q ss_pred CCCCCCCCCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC------------CceeEEecCCCChhHH
Q 007093 231 GNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK------------GGMKSFELDSADPFWV 298 (618)
Q Consensus 231 ~~~~~~~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~------------~~~~~~~L~~~D~l~~ 298 (618)
.. ..+.++++|||+||++|++|||+||||||||+||+|||++|+|+++... .+++++.|+++|++|+
T Consensus 256 ~~-~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~~w~ 334 (671)
T 1mqs_A 256 QG-NDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWM 334 (671)
T ss_dssp -------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCCSSCTTHH
T ss_pred cC-CCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEecCCCCHHHH
Confidence 10 1235789999999999999999999999999999999999999997531 2247899999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 007093 299 ANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLL 378 (618)
Q Consensus 299 ~~R~~~i~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~ 378 (618)
++||+||++|++.|.+++++|+++++++++.++..+.+++|+. ..+++++|++||++||+|+++++.+++|++||++|+
T Consensus 335 ~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~ 413 (671)
T 1mqs_A 335 ENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPN-SNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALL 413 (671)
T ss_dssp HHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCccccccc-ccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887765543332222221 246799999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHhhhhcCCCChHHHHHHhcc--CCCchhHHHHHHHHHHhcC-CCChHHHHHHHHHHHhCCCCchh
Q 007093 379 GEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKG--KGSKMDKLRFAIIYLISSE-TINQSEVEAVEAALRESEVDISA 455 (618)
Q Consensus 379 ~~~~~~~l~~~~~~Eq~i~~g~~~~~~~i~~~l~~--~~~~~d~LRLl~L~~l~~~-g~~~~~~~~l~~~l~~~g~~~~~ 455 (618)
+.+++++|++++++||+|+.+ .+.++++++|.. ..++.|||||+|||+++++ |+++++++.+++.++.+|++...
T Consensus 414 ~~i~~~~l~~~~e~EQ~l~~~--~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~~l~~~G~~~~~ 491 (671)
T 1mqs_A 414 SQLESKSLDTFFEVEQDPGST--KTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINA 491 (671)
T ss_dssp HHHHTTTCHHHHHHTSCCSSH--HHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHhHhhHHHHHHHHHHHhcC--chHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 999999999999999999732 236789999964 4599999999999999999 99999999999988999998778
Q ss_pred HHHHHHHHHhhhhh--cc-cC-------CC------CCCchhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHH
Q 007093 456 FQYVKKIKSLNVSL--AS-AN-------SA------SRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALV 519 (618)
Q Consensus 456 ~~~l~~l~~l~~~~--~~-~~-------~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~ 519 (618)
+.++.++..++... .. .. .. ..+....+.++.+..+.+.+.+|+++++|..+.|+++++||.++
T Consensus 492 ~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~r~~~~~~~~g~~~~~~~v~n~~P~~~~~~l~~ive~l~ 571 (671)
T 1mqs_A 492 LKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIM 571 (671)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCC------------------CHHHHHTTTSSCSSSHHHHHHTCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccccccccHHHHHHHHhccchhhHHHhHHhhCCCcccchHHHHHHHHH
Confidence 88888887765432 10 00 00 01112234444554344455678999999999999999999999
Q ss_pred cCCCCC-----CCCcccccCCCCCCCCCCCCCCCCCCceEEEEEEcCccHHhhHHHHHHHHhc-CCCceEEEccccccCh
Q 007093 520 EGRPNP-----EIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQ-QPVKHVIYGTTEILTG 593 (618)
Q Consensus 520 ~~~l~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~-~~~~~iiigsT~i~n~ 593 (618)
++.... ..++|||++|+....+...++.+++++++|||||||+||+|+++||+|+++. ..+++|+||||+|+||
T Consensus 572 ~~~~~~~k~~l~~~~y~~~~p~~~~~~~~~~~~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~ 651 (671)
T 1mqs_A 572 DPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTP 651 (671)
T ss_dssp CSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCH
T ss_pred hccccccccCCCccCceeeCCCCcCCCCCCCcccCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeeccccCH
Confidence 983211 1479999988643211111123456789999999999999999999999763 2479999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCC
Q 007093 594 DEFVEQLALLGQKMGLGNTV 613 (618)
Q Consensus 594 ~~fl~~l~~l~~~~~~~~~~ 613 (618)
++||++|..|++.....|++
T Consensus 652 ~~Fl~~l~~l~~~~~~~~~~ 671 (671)
T 1mqs_A 652 AEFLNEISRLGASNSSNNDA 671 (671)
T ss_dssp HHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHhCcccccCCCC
Confidence 99999999999987766654
No 2
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=2.2e-101 Score=869.71 Aligned_cols=557 Identities=20% Similarity=0.317 Sum_probs=459.2
Q ss_pred chHHHHHHHHHH-HHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEEE
Q 007093 3 LNLRQKQTECIT-RMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVY 81 (618)
Q Consensus 3 ~~l~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy 81 (618)
++|++++|++|. .|++..+ ..+||||||+|+.++++||++|++++|+++||++++.|+.+|+|+|+++|||
T Consensus 1 ~~l~~~~~~~~~~~i~~~~~--------~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy 72 (591)
T 1epu_A 1 MALKTAVHEKIMNDVVLAVK--------KNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVY 72 (591)
T ss_dssp -CHHHHHHHHHHHHTHHHHC--------SSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHhhc--------cCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEE
Confidence 579999999987 6777543 3469999999999999999999999999999999999999999999999999
Q ss_pred EEccCHHHHHHHHHHhhc---CCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCC
Q 007093 82 FVQASQQNIQRIIADASA---SLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKS 158 (618)
Q Consensus 82 ~i~Pt~~~i~~i~~d~~~---~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~ 158 (618)
||+|+.+|+++|++|+++ ++|++|||+|++.+++.+++.||+ +++.+.|.+|.|+++||+|+|+|+|||++|+
T Consensus 73 ~v~Pt~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~----~~~~~~i~~v~e~~ldf~ple~dlfsl~~~~ 148 (591)
T 1epu_A 73 LITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK----STTARFIKTLKEINIAFLPYESQIFSLDSPD 148 (591)
T ss_dssp EECCCHHHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHH----STTGGGEEEEEECCCCSEEEETTEEECCCTH
T ss_pred EecCCHHHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHh----CchHhhhceeeEeccceEecCCCEEEeCCcc
Confidence 999999999999999996 899999999999999999999999 6788999899999999999999999999999
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCC-chHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 007093 159 SYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSG-PAEMVASALDQKLRDHLLSKNNLFSEGGNFASSF 237 (618)
Q Consensus 159 ~f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~-~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (618)
+|..+|.+.+ ++...+.++++|++|+++|.++|.+|.|||.+++ .|++||+.++++++++...+ +.|+.+ .+.
T Consensus 149 ~~~~~~~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~-~~~~~~----~~~ 222 (591)
T 1epu_A 149 TFQVYYNPSR-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADD-PTMGEG----PQK 222 (591)
T ss_dssp HHHHHHCGGG-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTC-TTTTCH----HHH
T ss_pred HHHHhcCCcc-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcC-CCCCCC----CCC
Confidence 9999997642 1123578999999999999999999999999876 69999999999998876433 334332 235
Q ss_pred CCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC---CceeEEecCCCChhHHhccCCCHHHHHHHHHH
Q 007093 238 QRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK---GGMKSFELDSADPFWVANGWLEFPEVAVEIET 314 (618)
Q Consensus 238 ~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~---~~~~~~~L~~~D~l~~~~R~~~i~~v~~~l~~ 314 (618)
++++|||+||++|++|||+||||||||+||+|||++|+|+++... .+++++.||++|++|+++||+||++|++.|.+
T Consensus 223 ~~~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 302 (591)
T 1epu_A 223 DRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTK 302 (591)
T ss_dssp TSCEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-----------CEECCGGGSSHHHHTTSBHHHHHHHHHH
T ss_pred CCceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEecCCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999997532 23578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 007093 315 QLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKEN 394 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq 394 (618)
++++|+++.++.+. + ...++++|++||++||+++++++.+++|++||++|++.+++ +|++++++||
T Consensus 303 ~~~~~~~~~~~~~~---~----------~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ 368 (591)
T 1epu_A 303 KLKQFADEKRMGTA---A----------DKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQ 368 (591)
T ss_dssp HHHHHHHHTC---------------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHhcccccc---c----------cccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999887422110 0 13578899999999999999999999999999999999999 9999999999
Q ss_pred hhhhcCCCC-------hHHHHHHh-ccCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 007093 395 DMMIRGGID-------RSELMGVL-KGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLN 466 (618)
Q Consensus 395 ~i~~g~~~~-------~~~i~~~l-~~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~ 466 (618)
++++|.+.+ .+.++++| ....++.|||||+|||+++++|+++++++ ++++.+|++.+.+.++.+|.++|
T Consensus 369 ~l~~g~d~~g~~~k~~~~~i~~~l~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~---~ll~~~g~~~~~~~~i~~l~~~g 445 (591)
T 1epu_A 369 DLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLA---KLVQHAHIPAEEKWIINDMQNLG 445 (591)
T ss_dssp HHHHSBCTTSCBCCCCHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTCBCHHHHH---HHHHHTTCCHHHHHHHHHGGGGT
T ss_pred HHhcCCCccccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHH---HHHHhcCCCHHHHHHHHHHHHcC
Confidence 999997643 24788877 46889999999999999999999998875 57999999877899999999998
Q ss_pred hhhcccCCCCCCchh-hhhHH--hhcccchhhhhcccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCC
Q 007093 467 VSLASANSASRNNIV-DWAEK--LYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSG 543 (618)
Q Consensus 467 ~~~~~~~~~~~~~~~-~~~~~--~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~~~~ 543 (618)
....++.. ++..+. .+.+. ..+++.+|+++ +|.|+++|+||.+++++++ .+.|||++|+....+..
T Consensus 446 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~s--------~~~Pl~~~ive~l~~~~l~--~~~~~~~~~~~~~~~~~ 514 (591)
T 1epu_A 446 VPIIQDGG-RRKIPQPYHTHNRKERQADHTYQMS--------RWTPYMKDIMEAAVEDKLD--TRHYPFLNGGGPRPSCQ 514 (591)
T ss_dssp CCCBSCTT-SCCCCCTTSGGGSCCCCSCCSCGGG--------CCCCHHHHHHHHHHTTCSC--TTTSCBTTSCC------
T ss_pred CccccCCc-cccccccccccccccCCCCcccccc--------ccchhHHHHHHHHhcCCCC--cccCcccCCCCCccccC
Confidence 64433211 111111 01111 11223444444 5689999999999999876 58999998754221100
Q ss_pred -------CCCC-------CCCCceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhcc
Q 007093 544 -------SNHL-------KGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQ 605 (618)
Q Consensus 544 -------~~~~-------~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~ 605 (618)
+++. ...++++|||||||+||+|++++|+|+++...+++|+||||+|+||++||++|..|++
T Consensus 515 ~~~s~~~~~~~~~~~~~~~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~~~fl~~l~~l~~ 590 (591)
T 1epu_A 515 QPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISN 590 (591)
T ss_dssp -------------------CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHTTSC
T ss_pred CccccccCcccCCCCccccCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCHHHHHHHHHHhcC
Confidence 0000 1234569999999999999999999997434589999999999999999999999886
No 3
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=5.6e-100 Score=864.08 Aligned_cols=553 Identities=19% Similarity=0.310 Sum_probs=463.4
Q ss_pred chHHHHHHHHHH-HHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEEE
Q 007093 3 LNLRQKQTECIT-RMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVY 81 (618)
Q Consensus 3 ~~l~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy 81 (618)
++||+++|++|. ++| +.. ..++|||||+|+.++++||++|++++|+++||++++.|+.+|+|+|+++|||
T Consensus 2 ~~l~~~~r~~ll~~~l-~v~--------~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy 72 (650)
T 2xhe_A 2 MSLKSAVKTVLTNSLR-SVA--------DGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVY 72 (650)
T ss_dssp CCHHHHHHHHHHHHHT-TCC--------CCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEE
T ss_pred ccHHHHHHHHHHHHHh-ccc--------cCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEE
Confidence 689999999999 899 542 2469999999999999999999999999999999999999999999999999
Q ss_pred EEccCHHHHHHHHHHhhc--CCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCCc
Q 007093 82 FVQASQQNIQRIIADASA--SLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSS 159 (618)
Q Consensus 82 ~i~Pt~~~i~~i~~d~~~--~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~~ 159 (618)
||+|+.+|+++|++|+++ ++|+.|||+|++.+|+.+||+||+ +++.+.|.+|.|+++||+|+|+|+|||++|++
T Consensus 73 fv~Pt~~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~----~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~ 148 (650)
T 2xhe_A 73 FIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLAS----AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHG 148 (650)
T ss_dssp EECSCHHHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHH----SGGGGGEEEEEECCCCSEEEETTEEECSCTTH
T ss_pred EEcCCHHHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHh----cchhhhcCEEEEEccceEeccCCEEEeCCchH
Confidence 999999999999999998 899999999999999999999998 78899998999999999999999999999999
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCC--chHHHHHHHHHHHHHHHhhcCCCCC-CCCCCCCC
Q 007093 160 YVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSG--PAEMVASALDQKLRDHLLSKNNLFS-EGGNFASS 236 (618)
Q Consensus 160 f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~--~a~~va~~l~~~l~~~~~~~~~~~~-~~~~~~~~ 236 (618)
|..+|++.. ..+.++++|++|+++|.++|.+|.|||.+++ .|++||++|++++++ . .+ +.+. .+ .+
T Consensus 149 ~~~l~~~~~----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~-~-~~-~~~~~~~----~~ 217 (650)
T 2xhe_A 149 LVQYYGSRS----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDM-S-VS-QGLINAR----EG 217 (650)
T ss_dssp HHHHHSTTG----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHH-H-HT-TTSCCCC----CC
T ss_pred HHHhcCCcc----chHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHh-h-cc-CCcccCC----CC
Confidence 999986531 2467999999999999999999999999876 799999999988876 1 22 2222 11 23
Q ss_pred CCCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC----CceeEEecCCCChhHHhccCCCHHHHHHHH
Q 007093 237 FQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK----GGMKSFELDSADPFWVANGWLEFPEVAVEI 312 (618)
Q Consensus 237 ~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~----~~~~~~~L~~~D~l~~~~R~~~i~~v~~~l 312 (618)
.++++|||+||++|++|||+||||||||+||+|||++|+|+++... .+++++.||++|++|+++||+||++|++.|
T Consensus 218 ~~~~~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l 297 (650)
T 2xhe_A 218 KLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRKV 297 (650)
T ss_dssp SSCCEEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCSSCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHH
T ss_pred CCCCEEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCCCCCccceEEeCCCCCHHHHHHhccCHHHHHHHH
Confidence 5689999999999999999999999999999999999999997542 235889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007093 313 ETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKK 392 (618)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~ 392 (618)
.+++++|+++.++.+..+ . +. ++..++++|++||++||+++++++.+++|++||++|++.+++ +|.+++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~-~------~~-~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~ 368 (650)
T 2xhe_A 298 KSSFDEFCVSARRLQGLR-D------SQ-QGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKA 368 (650)
T ss_dssp HHHHHHHHHHHHHTTTCC-C------CC-CSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccc-c------cc-cccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999998876544110 0 00 125689999999999999999999999999999999999999 99999999
Q ss_pred HHhhhhcCCCC-------hHHHHHHhc-cCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007093 393 ENDMMIRGGID-------RSELMGVLK-GKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKS 464 (618)
Q Consensus 393 Eq~i~~g~~~~-------~~~i~~~l~-~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~ 464 (618)
||++++|.+.+ .+.++++|. ...++.|||||+|||+++++|+++++++ ++++.||++.+.+.++.||++
T Consensus 369 EQ~l~~g~d~~g~~~~~~~~~i~~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~---~ll~~~G~~~~~~~~i~nL~~ 445 (650)
T 2xhe_A 369 EQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELN---NLLDNANIATPSRSAIYNLEM 445 (650)
T ss_dssp HHHHHHSBCSSCCBCCCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHH---HHHHHTTCCGGGGHHHHGGGG
T ss_pred HHHHhcCCcccccchhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHH---HHHHHcCCCHHHHHHHHHHHH
Confidence 99999997642 257788885 6889999999999999999999998875 579999998778999999999
Q ss_pred hhhhhcccCCCCCCchhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCC-----
Q 007093 465 LNVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPK----- 539 (618)
Q Consensus 465 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~----- 539 (618)
+|....++. .++..+.. . +. .++.+|++ ++|.|+++|+||++++++++ .+.||+++++...
T Consensus 446 lgl~~~~~~-~~~~~~~~-~-rk-~~~~~yv~--------s~y~Pl~~rlve~l~~~~l~--~~~~p~~~~~~~~~~~~~ 511 (650)
T 2xhe_A 446 LGATVVADR-RGRKPKTM-K-RI-ERDMPYVL--------SRWTPIVKDLMEYIATGQLD--LESYPAVRDGPSVVQPKR 511 (650)
T ss_dssp GTCCCBGGG-CCCCCCCC-C-CC-CCCCCSTT--------CCCCCHHHHHHHHHTTTCSC--TTTSCBSSCGGGSCCCC-
T ss_pred hCCcccccc-cccccccc-c-cc-ccCCccee--------ccchHHHHHHHHHHhcCCCC--cccCceeCCCCccccccc
Confidence 986543321 11111110 0 00 11113333 45789999999999999987 5899998663211
Q ss_pred --------CCCC-------CCC----------------------C-----CCCCceEEEEEEcCccHHhhHHHHHHHHhc
Q 007093 540 --------SSSG-------SNH----------------------L-----KGPFKEAIVFMIGGGNYMEYGSLQELAKRQ 577 (618)
Q Consensus 540 --------~~~~-------~~~----------------------~-----~~~~~~viVf~iGGvTy~Ei~al~~l~~~~ 577 (618)
.+.. +++ . ..+++++||||||||||+|++++|+|+++
T Consensus 512 ~~~~~~~~~~~~~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~- 590 (650)
T 2xhe_A 512 ASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQS- 590 (650)
T ss_dssp --------------------------------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhc-
Confidence 0000 000 0 13457799999999999999999999975
Q ss_pred CCCceEEEccccccChHHHHHHHHhhcccC
Q 007093 578 QPVKHVIYGTTEILTGDEFVEQLALLGQKM 607 (618)
Q Consensus 578 ~~~~~iiigsT~i~n~~~fl~~l~~l~~~~ 607 (618)
.+++|+||||+|+||++||++|..++++.
T Consensus 591 -~~~~viigsT~Iln~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 591 -SGYEVYIGAHNIATPAEFVELVSLLDKAD 619 (650)
T ss_dssp -SSSEEEEEEEEECCHHHHHHHHHTTTC--
T ss_pred -CCCEEEEeeCCcCCHHHHHHHHHHcCCCc
Confidence 48999999999999999999999998863
No 4
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=2.6e-100 Score=854.38 Aligned_cols=558 Identities=19% Similarity=0.335 Sum_probs=463.3
Q ss_pred cchHHHHHHHHHHH-HhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEE
Q 007093 2 ALNLRQKQTECITR-MLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAV 80 (618)
Q Consensus 2 ~~~l~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aI 80 (618)
.++||+++|++|.+ ||++.+ ..++|||||+|+.++++||++|++++|+++||++++.|+.+|+|+|+++||
T Consensus 3 ~~~lk~~~~~~l~~~~l~~~~--------~~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aI 74 (594)
T 1dn1_A 3 PIGLKAVVGEKIMHDVIKKVK--------KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAV 74 (594)
T ss_dssp -CCHHHHHHHHHHHHTTGGGC--------CTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEE
T ss_pred chhHHHHHHHHHHHHHHhhcc--------cCCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceE
Confidence 47899999999977 888653 467999999999999999999999999999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHhhc---CCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCC
Q 007093 81 YFVQASQQNIQRIIADASA---SLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQK 157 (618)
Q Consensus 81 y~i~Pt~~~i~~i~~d~~~---~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~ 157 (618)
|||+||.+||++|++||++ ++|++|||+|++.+++.+++.||+ +++.+.|++|.|+++||+|+|+++|||++|
T Consensus 75 Yfv~Pt~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~----~~~~~~i~~v~e~~ldfiple~dlFsL~~p 150 (594)
T 1dn1_A 75 YLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK----SRAAKVIKTLTEINIAFLPYESQVYSLDSA 150 (594)
T ss_dssp EEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH----SGGGGTEEEEEECCCCSEEEETTEEECCCT
T ss_pred EEEeCCHHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh----cchHhhhcchheeeeeeEEccCCEEEecCc
Confidence 9999999999999999985 699999999999999999999998 789999999999999999999999999999
Q ss_pred CccccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCc-hHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 007093 158 SSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGP-AEMVASALDQKLRDHLLSKNNLFSEGGNFASS 236 (618)
Q Consensus 158 ~~f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~-a~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~ 236 (618)
++|..+|.+.+++ ...+.++++|++|+++|.++|.+|.|||.++.. |+++|++++++|+++...++. +..+ .+
T Consensus 151 ~~f~~l~~~~~~~-~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~-~~~~----~~ 224 (594)
T 1dn1_A 151 DSFQSFYSPHKAQ-MKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPT-MGEG----PD 224 (594)
T ss_dssp THHHHHHCGGGTT-SHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTT-TTCS----TT
T ss_pred chHHHHhCCcccc-cchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCcc-ccCC----CC
Confidence 9999999876533 456889999999999999999999999986653 789999999999886532222 2211 23
Q ss_pred CCCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC---CceeEEecCCCChhHHhccCCCHHHHHHHHH
Q 007093 237 FQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK---GGMKSFELDSADPFWVANGWLEFPEVAVEIE 313 (618)
Q Consensus 237 ~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~---~~~~~~~L~~~D~l~~~~R~~~i~~v~~~l~ 313 (618)
.++++|||+||++|++|||+||||||||+||+|||++|+|+++... .+++++.|+++|++|.++||+||++|++.|.
T Consensus 225 ~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 225 KARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCCCCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 5689999999999999999999999999999999999999997542 2368899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 007093 314 TQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKE 393 (618)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~E 393 (618)
+++++|+++.+..+ + ...+++||++||++||+++++++.+++|++||++|++.+++ .|++++++|
T Consensus 305 ~~~~~~~~~~~~~~--~------------~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~E 369 (594)
T 1dn1_A 305 RSLKDFSSSKRMNT--G------------EKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVE 369 (594)
T ss_dssp HHHHHHHHHTTC---------------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHhhhcc--c------------ccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999987642210 0 14577899999999999999999999999999999999997 899999999
Q ss_pred HhhhhcCCCC-------hHHHHHHh-ccCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 007093 394 NDMMIRGGID-------RSELMGVL-KGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSL 465 (618)
Q Consensus 394 q~i~~g~~~~-------~~~i~~~l-~~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l 465 (618)
|++++|.+.+ .+.|+++| ....+..|||||+|||+|+++|+++++++ ++++++|++...+.++.||.++
T Consensus 370 Q~l~~g~d~~~~~~k~~~~~i~~lL~~~~~~~~dkLRL~~Ly~l~~~g~~~~~~~---~L~~~~~~~~~~~~~i~nl~~l 446 (594)
T 1dn1_A 370 QDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLN---KLIQHAQIPPEDSEIITNMAHL 446 (594)
T ss_dssp HHHHHSBCSSCCBCCCTHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHH---HHHHHHTCCHHHHHHHHHGGGG
T ss_pred HHHHcCCCcccchhHHHHHHHHHHHhCCCCChHhHHHHHHHHHHHcCCCCHHHHH---HHHHHcCCCHHHHHHHHHHHHh
Confidence 9999987642 25677788 46889999999999999999999998886 4577888888889999999999
Q ss_pred hhhhcccCCCCCCchhhhhHHhhcccchhhhhccccccc-ccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCC---C
Q 007093 466 NVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLS-NDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS---S 541 (618)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~---~ 541 (618)
|....+..... ... +... -..+..+.|. ++|+|.+.+++|++++|+|+ .+.|||+.++.... +
T Consensus 447 G~~~~~~~~~~--k~~----~~~~-----k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~--~~~fP~~~~~~~~~~~~~ 513 (594)
T 1dn1_A 447 GVPIVTDSTLR--RRS----KPER-----KERISEQTYQLSRWTPIIKDIMEDTIEDKLD--TKHYPYISTRSSASFSTT 513 (594)
T ss_dssp TCCCBCCCGGG--CCC----CCCC-----CCCCCSCCCTTCCCCCHHHHHHHHHHTTCSC--TTTSCCSSCC--------
T ss_pred CCccccccccc--ccc----cccc-----ccCCCCccceeeccchHHHHHHHHHHhCCCC--cccCCccCCCCCcccccc
Confidence 85432211000 000 0000 0123445553 68999999999999999997 58999986543210 0
Q ss_pred CC----CCCC--C-----CCCceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhcccCCC
Q 007093 542 SG----SNHL--K-----GPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGL 609 (618)
Q Consensus 542 ~~----~~~~--~-----~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~~~~~ 609 (618)
.. +++. + .+.+++|||||||+||+|+|++|+++++. ++++|++|||+|+||.+||++|..+.++...
T Consensus 514 ~~s~r~~~w~~~~~~~~~~~~~riivFivGG~Ty~E~r~~~els~~~-~~~~VilG~t~il~p~~Fl~~l~~l~~~~~~ 591 (594)
T 1dn1_A 514 AVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQAN-GKWEVLIGSTHILTPQKLLDTLKKLNKTDEE 591 (594)
T ss_dssp ------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHH-SSCEEEEEESSEECHHHHHHHHTTTTSCSSC
T ss_pred ccccccccccccCCccccccCCcEEEEEeCCccHHHHHHHHHHHhhc-CCceEEEeeCCcCCHHHHHHHHHHhCCCccc
Confidence 00 0111 1 13467999999999999999999999874 4699999999999999999999998775543
No 5
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=8e-100 Score=858.89 Aligned_cols=557 Identities=19% Similarity=0.337 Sum_probs=457.2
Q ss_pred chHHHHHHHHHH-HHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEEE
Q 007093 3 LNLRQKQTECIT-RMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVY 81 (618)
Q Consensus 3 ~~l~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy 81 (618)
++||++++++|. +||++.+ ...+|||||+|+.+++|||++|++++|+++||++++.|+++|+|+|+++|||
T Consensus 16 ~~l~~~~~~~~l~~~i~~v~--------~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIy 87 (606)
T 3c98_A 16 IGLKAVVGEKIMHDVIKKVK--------KKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVY 87 (606)
T ss_dssp CCHHHHHHHHHHHHTHHHHC--------BTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhccC--------CCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEE
Confidence 579999999975 5998653 3567999999999999999999999999999999999999999999999999
Q ss_pred EEccCHHHHHHHHHHhhc---CCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCC
Q 007093 82 FVQASQQNIQRIIADASA---SLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKS 158 (618)
Q Consensus 82 ~i~Pt~~~i~~i~~d~~~---~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~ 158 (618)
||+||.+||++|++||++ ++|++|||+|++.+++.++++||+ ++..+.|.+|.|+++||+|+|+|+|||++|+
T Consensus 88 fv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~----~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~ 163 (606)
T 3c98_A 88 LITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK----SRAAKVIKTLTEINIAFLPYESQVYSLDSAD 163 (606)
T ss_dssp EECCCHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHT----SGGGGTEEEEEECCCCSEECSSSEEECCCTT
T ss_pred EEcCCHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh----cCcccccCeEEEEecchhhcCCcEEEecCCc
Confidence 999999999999999986 489999999999999999999998 7899999999999999999999999999999
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCC-chHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 007093 159 SYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSG-PAEMVASALDQKLRDHLLSKNNLFSEGGNFASSF 237 (618)
Q Consensus 159 ~f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~-~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (618)
+|..+|.+.+.+ ...+.++++|++|+++|.++|.+|.|||.+++ .|+.+|++++++++.+...++. +..+ .+.
T Consensus 164 ~~~~l~~~~~~~-~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~~~l~~~~~~~~~-~~~~----~~~ 237 (606)
T 3c98_A 164 SFQSFYSPHKAQ-MKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPT-MGEG----PDK 237 (606)
T ss_dssp HHHHHHCGGGTT-SCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHHHHHHHHHHHCTT-TTCS----TTT
T ss_pred hHHHhcCCcccc-cchHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHHHHHHHHHhcCCc-ccCC----CCC
Confidence 999999765432 23578999999999999999999999998765 4778999999988877544332 3322 246
Q ss_pred CCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC---CceeEEecCCCChhHHhccCCCHHHHHHHHHH
Q 007093 238 QRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK---GGMKSFELDSADPFWVANGWLEFPEVAVEIET 314 (618)
Q Consensus 238 ~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~---~~~~~~~L~~~D~l~~~~R~~~i~~v~~~l~~ 314 (618)
++++|||+||++|++|||+||||||||+||+|||++|.|+++... +.++++.|+++|++|.++||+||++|++.|.+
T Consensus 238 ~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l~~ 317 (606)
T 3c98_A 238 ARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTR 317 (606)
T ss_dssp TSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESSSSEEEEEEECSTTCHHHHHHTTSBHHHHHHHHHH
T ss_pred CCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCCCCCccceEeecCCCchhHHHHhccCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999996532 23578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 007093 315 QLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKEN 394 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq 394 (618)
++++++++.++.+ + ...++++|++||++||+++++++.+++|++||++|++.++ ++|++++++||
T Consensus 318 ~~~~~~~~~~~~~---~-----------~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ 382 (606)
T 3c98_A 318 SLKDFSSSKRMNT---G-----------EKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQ 382 (606)
T ss_dssp HHHHHHHHTTC---------------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred HHHHHHHHHhhhc---c-----------cccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999987632111 0 1457789999999999999999999999999999999996 48999999999
Q ss_pred hhhhcCCCC-------hHHHHHHhc-cCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 007093 395 DMMIRGGID-------RSELMGVLK-GKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLN 466 (618)
Q Consensus 395 ~i~~g~~~~-------~~~i~~~l~-~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~ 466 (618)
++++|.+.+ .+.++++|. ...+..|||||+|||+++++|+++++++.+ ++..|++.....++.++..+|
T Consensus 383 ~l~~~~d~~~~~~~~~~~~i~~ll~~~~~~~~dkLRL~lLy~l~~~g~~~~~l~~~---~~~~~~~~~~~~~i~~l~~lg 459 (606)
T 3c98_A 383 DLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKL---IQHAQIPPEDSEIITNMAHLG 459 (606)
T ss_dssp HHHHSBCTTSCBCSCTHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTSBCHHHHHHH---HHHHTCCHHHHHHHHHGGGGT
T ss_pred HHHhCCCcchhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHcCCCHHHHHHHHHHHHhC
Confidence 999987653 256778774 678999999999999999999999887644 556688777888999998888
Q ss_pred hhhcccCCCCCCchhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCC---
Q 007093 467 VSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSG--- 543 (618)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~~~~--- 543 (618)
.................. ....+.+|.+ .+|+|++++++|.+++++++ .+.|||+++........
T Consensus 460 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------s~~~Pll~~lle~l~k~~L~--~~~~p~~~~~~~~~~~~~~~ 527 (606)
T 3c98_A 460 VPIVTDSTLRRRSKPERK--ERISEQTYQL--------SRWTPIIKDIMEDTIEDKLD--TKHYPYISTRSSASFSTTAV 527 (606)
T ss_dssp CCCBCCCTTTCCCCCCCC--CCCCCCCCTT--------CCCCCHHHHHHHHHHTTCSC--TTTSCCSSCC----------
T ss_pred Cccccccccccccchhhc--cCCcccccce--------ecchHHHHHHHHHHHhCCCC--cccCcccCCCCccccccccc
Confidence 543321111100000000 0111223333 46789999999999999987 58999987654321100
Q ss_pred ----CC-------CCCCCCceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhcccCC
Q 007093 544 ----SN-------HLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMG 608 (618)
Q Consensus 544 ----~~-------~~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~~~~ 608 (618)
+. ....+++++|||||||+||+|++++|+|+++. ++++|+||||+|+||++||++|..|+++..
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~-~~~~viiGsT~Iln~~~fl~~L~~L~k~~~ 602 (606)
T 3c98_A 528 SARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQAN-GKWEVLIGSTHILTPQKLLDTLKKLNKTDE 602 (606)
T ss_dssp ----------------CCCSEEEEEEETCEEHHHHHHHHHHHHHH-SSCEEEEEESSEECHHHHHHHHTTTTSCCS
T ss_pred ccccCCccccCCCCCCCCCCEEEEEEECCcCHHHHHHHHHHHHHc-CCcEEEEEeCCeeCHHHHHHHHHHhCCCch
Confidence 00 01223567999999999999999999999774 468999999999999999999999998654
No 6
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=5.4e-100 Score=851.46 Aligned_cols=549 Identities=18% Similarity=0.308 Sum_probs=454.7
Q ss_pred cchHHHHHHHHHHH-HhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEE
Q 007093 2 ALNLRQKQTECITR-MLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAV 80 (618)
Q Consensus 2 ~~~l~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aI 80 (618)
.++||+++|++|.+ ||++.+ ..++|||||+|+.+++|||++|++++|+++||++++.|+.+|+|+|+++||
T Consensus 7 ~~~lk~~~~~~l~~~~l~~v~--------~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aI 78 (592)
T 3puk_A 7 ERGLKSVVWRKIKTAVFDDCR--------KEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKAL 78 (592)
T ss_dssp CCCHHHHHHHHHHHHTTGGGC--------CTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEE
T ss_pred ChhHHHHHHHHHHHHHHHhhc--------ccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEE
Confidence 36899999999987 898653 468999999999999999999999999999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHhhcC---CCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCC
Q 007093 81 YFVQASQQNIQRIIADASAS---LYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQK 157 (618)
Q Consensus 81 y~i~Pt~~~i~~i~~d~~~~---~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~ 157 (618)
|||+||.+||++|++|++++ +|++|||+|++.+++.+++.| + +++.+.|++|.|+++||+|+|+++|||++|
T Consensus 79 Yfv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~----~~~~~~I~~v~e~~ldfiple~~lFsL~~p 153 (592)
T 3puk_A 79 YFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K----ASCSKSIRRCKEINISFIPQESQVYTLDVP 153 (592)
T ss_dssp EEECSCHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H----HSCCSSEEEEEECCCCEEEEETTEEEECCT
T ss_pred EEEeCCHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H----hhHHhhcCEEEEEeeeeEeccCCEEEecCC
Confidence 99999999999999999975 999999999999999999999 5 688999999999999999999999999999
Q ss_pred CccccccCCCCCc-hHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCC--chHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 007093 158 SSYVQLNDPKAGD-REIEEIIERIVNGLFCVLATLGVVPIIRCPRSG--PAEMVASALDQKLRDHLLSKNNLFSEGGNFA 234 (618)
Q Consensus 158 ~~f~~~~~~~~~~-~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~--~a~~va~~l~~~l~~~~~~~~~~~~~~~~~~ 234 (618)
++|..+|.+++++ +..++.++++|++|+++|.++|.+|.|||.++. .|++||++++++|+++...+.+.+..
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~----- 228 (592)
T 3puk_A 154 DAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIK----- 228 (592)
T ss_dssp THHHHHSCCSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHHHHHHHHHSSSSCSSCSCC-----
T ss_pred chHHHHcCCcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHHHHHHHHHHHhccCCCcCC-----
Confidence 9999999887642 356789999999999999999999999999764 47799999998887632221111111
Q ss_pred CCCCCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCCCceeEEecCCCChhHHhccCCCHHHHHHHHHH
Q 007093 235 SSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIET 314 (618)
Q Consensus 235 ~~~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~~~~~~~~L~~~D~l~~~~R~~~i~~v~~~l~~ 314 (618)
..++++|||+||++|++|||+||||||||+||+|||++|.|+++.. |+++++.|+++|++|.++||+||++|++.|.+
T Consensus 229 -~~~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~~-g~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 306 (592)
T 3puk_A 229 -GKTQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKTD-GKEKEAVLEEDDDLWVRVRHRHIAVVLEEIPK 306 (592)
T ss_dssp -SCCSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCSS-SSCCEEECSTTSSSTTTTTTSBHHHHHTTSCS
T ss_pred -CCCCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecCC-CceeEEecCCCCHHHHHHhccCHHHHHHHHHH
Confidence 2578999999999999999999999999999999999999999863 45688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 007093 315 QLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKEN 394 (618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq 394 (618)
++++|+++.++.. ...++++|++||++||+++++++.+++|++||++|++.+++ +|++++++||
T Consensus 307 ~~~~~~~~~~~~~---------------~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ 370 (592)
T 3puk_A 307 LMKEISSTKKATE---------------GKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQ 370 (592)
T ss_dssp CSTTTTTCC----------------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHH
T ss_pred HHHHHHHHhhccc---------------CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9998876542211 14678899999999999999999999999999999999998 8999999999
Q ss_pred hhhhcCCCC-------hHHHHHHhc-cCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 007093 395 DMMIRGGID-------RSELMGVLK-GKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLN 466 (618)
Q Consensus 395 ~i~~g~~~~-------~~~i~~~l~-~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~ 466 (618)
++++|.+.+ .+.|+++|. ...+..|||||+|||+|+++|+++++++ ++++.+|++. ....+.||..+|
T Consensus 371 ~l~~g~d~~~~~~k~~~~~i~~~L~~~~~~~~dkLRL~lLy~L~~~g~~~~~~~---~Ll~~~g~~~-~~~~i~nl~~lg 446 (592)
T 3puk_A 371 DLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEENLD---RLIHNVKIED-DSDMIRNWSHLG 446 (592)
T ss_dssp HHHSSSCTTCCSCSCCHHHHTTTTTSCSCCHHHHHHHHHHHHHHSCBCCHHHHH---HHHHHTCCCT-TTHHHHGGGGGT
T ss_pred HHHhCCCccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHH---HHHHHcCCCh-HHHHHHHHHHhC
Confidence 999987543 135566664 6789999999999999999999998875 4588899986 688899999988
Q ss_pred hhhcccCCCCCCchhhhhHHhhcccchhhhhccccccc-ccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCC--C-C
Q 007093 467 VSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLS-NDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS--S-S 542 (618)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~--~-~ 542 (618)
....+.. +.++..+ +. .+..+.|. ++|+|++.+++|++++|+++ .+.|||+.++.... + .
T Consensus 447 ~~~~~~~-~~~~~~r----k~---------~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~--~~~fP~~~~~~~~~~~~~~ 510 (592)
T 3puk_A 447 VPIVPPS-QQAKPLR----KD---------RSAEETFQLSRWTPFIKDIMEDAIDNRLD--SKEWPYCSRCPAVWNGSGA 510 (592)
T ss_dssp CCSSSSB-SSCCCCC----CC---------CCCCCGGGSCCCCCTTHHHHHHHHTCCCC--TTTSCC-------------
T ss_pred CccccCc-cccCccc----cc---------CCCCcceeeeccchHHHHHHHHHHhCCCC--cccCCccCCCCCCccCCcc
Confidence 5432211 1111110 10 12233332 57899999999999999997 58999986543110 0 0
Q ss_pred C----CCC------CCCCCceEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhcccC
Q 007093 543 G----SNH------LKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKM 607 (618)
Q Consensus 543 ~----~~~------~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~~~ 607 (618)
. +++ ...+++++|||||||+||+|+|++|+++++. ++++|+||||+|+||.+||++|..+.++.
T Consensus 511 ~s~r~~~w~~~~~~~~~~~~riiVFivGGvTysE~r~~~els~~~-~~~~vilG~T~i~np~~fl~~l~~l~~~~ 584 (592)
T 3puk_A 511 VSARQKPRTNYLELDRKNGSRLIIFVIGGITYSEMRCAYEVSQAH-KSCEVIIGSTHILTPRKLLDDIKMLNKSK 584 (592)
T ss_dssp -------CCCCCCCCCSCCSEEEEEEETCEEHHHHHHHHHHHHHC-CSSEEEEEESSEECHHHHHHHHSSTTSCC
T ss_pred ccccccccccCccccccCCCeEEEEEeCCcCHHHHHHHHHHHhhc-CCceEEEeeCCcCCHHHHHHHHHHhCCcc
Confidence 0 011 1123468999999999999999999999874 56999999999999999999999998754
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.97 E-value=3.6e-32 Score=249.48 Aligned_cols=142 Identities=48% Similarity=0.839 Sum_probs=129.0
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEE
Q 007093 1 MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAV 80 (618)
Q Consensus 1 ~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aI 80 (618)
|+.+||++||++|.+||+++++.++ ...+.++|||||+|+.++++||++|++++|+++||++++.|+++|+|+|+++||
T Consensus 18 m~~sLr~~qr~~l~~mL~~~~~~~~-~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aI 96 (159)
T 1y9j_A 18 MAASIRERQTVALKRMLNFNVPHVK-NSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAV 96 (159)
T ss_dssp --CHHHHHHHHHHHHHTTCCCSCCC-SSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCE
T ss_pred hHHHHHHHHHHHHHHHHhccCCccc-ccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEE
Confidence 5679999999999999998765322 234578999999999999999999999999999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHhhcCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeee
Q 007093 81 YFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLD 143 (618)
Q Consensus 81 y~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~d 143 (618)
|||+||.+|+++|++||++++|++|||+|++.+++.++++||++.++++..+.|+.|.|+++|
T Consensus 97 Yfv~Pt~enI~~i~~D~~~~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 97 YFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp EEECCCHHHHHHHHHHHHHTCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred EEecCCHHHHHHHHHHhhhcccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 999999999999999999999999999999999999999999877678888899888887765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.04 E-value=67 Score=21.04 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=26.8
Q ss_pred cCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 007093 345 GNTKHLMNAVNSLPELTERKQVIDKHTNIATVL 377 (618)
Q Consensus 345 ~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i 377 (618)
.+++++++++..|.+-..+.+.+.-|+..+.+-
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfakae 35 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKAE 35 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 578899999998888888888888888777643
No 9
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=20.29 E-value=79 Score=29.27 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=34.6
Q ss_pred eEEEEEEcCc-cHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhh
Q 007093 553 EAIVFMIGGG-NYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALL 603 (618)
Q Consensus 553 ~viVf~iGGv-Ty~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l 603 (618)
.+-|+..||+ |...+..+... +.+.++.++.+.+|....+.+.+.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~------Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDL------GVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHT------TCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHc------CCCEEEEChHHcCcHHHHHHHHHH
Confidence 3568999999 88877776442 688777778899999888887643
No 10
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=17.87 E-value=74 Score=30.11 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=31.5
Q ss_pred eEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccCh---HHHHHHHHh
Q 007093 553 EAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTG---DEFVEQLAL 602 (618)
Q Consensus 553 ~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~---~~fl~~l~~ 602 (618)
.+.|.+-||++-.-+..+.+. |.++++.++.|.+. .+-++.|..
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~a------GAd~~V~GsaIf~~~d~~~~i~~l~~ 219 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISASH------GANIIVAGTSIFNAEDPKYVIDTMRV 219 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHHH------TCCEEEESHHHHTCSSHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHc------CCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 567899999998755555332 89999999999965 344555543
Done!