Query 007094
Match_columns 618
No_of_seqs 282 out of 1457
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 4.2E-66 9.1E-71 550.3 28.6 306 23-353 105-410 (545)
2 cd02661 Peptidase_C19E A subfa 100.0 2.4E-56 5.1E-61 465.9 30.2 304 26-351 1-304 (304)
3 cd02668 Peptidase_C19L A subfa 100.0 2.1E-56 4.5E-61 472.6 29.3 298 28-351 1-324 (324)
4 cd02663 Peptidase_C19G A subfa 100.0 3.1E-56 6.7E-61 466.4 28.0 286 28-351 1-300 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 5.9E-56 1.3E-60 469.2 30.3 301 27-351 1-328 (328)
6 cd02664 Peptidase_C19H A subfa 100.0 6.8E-56 1.5E-60 469.2 25.7 276 28-351 1-327 (327)
7 cd02671 Peptidase_C19O A subfa 100.0 2.4E-55 5.2E-60 464.5 28.5 280 19-351 17-332 (332)
8 cd02667 Peptidase_C19K A subfa 100.0 1.9E-54 4.1E-59 448.4 25.0 246 28-351 1-279 (279)
9 cd02659 peptidase_C19C A subfa 100.0 2E-53 4.3E-58 451.0 28.3 295 26-354 2-333 (334)
10 cd02658 Peptidase_C19B A subfa 100.0 2.1E-53 4.5E-58 446.8 28.0 277 28-351 1-311 (311)
11 cd02657 Peptidase_C19A A subfa 100.0 2.9E-53 6.2E-58 444.4 26.3 283 28-351 1-305 (305)
12 cd02669 Peptidase_C19M A subfa 100.0 1.4E-50 3.1E-55 444.0 29.2 293 26-351 119-440 (440)
13 COG5560 UBP12 Ubiquitin C-term 100.0 4.2E-51 9.2E-56 435.2 14.4 323 23-354 263-823 (823)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 2.1E-49 4.6E-54 392.5 18.4 331 15-353 60-414 (415)
15 cd02662 Peptidase_C19F A subfa 100.0 5.7E-48 1.2E-52 391.4 23.1 209 28-351 1-240 (240)
16 cd02674 Peptidase_C19R A subfa 100.0 1.6E-45 3.4E-50 369.8 20.3 200 121-351 21-230 (230)
17 COG5077 Ubiquitin carboxyl-ter 100.0 2.1E-47 4.6E-52 412.4 6.7 311 9-359 177-517 (1089)
18 KOG1866 Ubiquitin carboxyl-ter 100.0 1.3E-46 2.9E-51 406.1 5.3 320 8-360 78-441 (944)
19 cd02666 Peptidase_C19J A subfa 100.0 7.3E-44 1.6E-48 377.1 17.7 285 26-351 1-343 (343)
20 PF00443 UCH: Ubiquitin carbox 100.0 7.8E-43 1.7E-47 353.8 23.8 256 26-350 1-269 (269)
21 KOG1868 Ubiquitin C-terminal h 100.0 5.4E-44 1.2E-48 397.4 14.7 328 21-357 296-650 (653)
22 KOG0944 Ubiquitin-specific pro 100.0 8.9E-43 1.9E-47 374.8 18.3 310 5-353 281-762 (763)
23 cd02665 Peptidase_C19I A subfa 100.0 2.4E-42 5.1E-47 344.7 17.6 197 121-351 21-228 (228)
24 cd02673 Peptidase_C19Q A subfa 100.0 1.6E-41 3.5E-46 344.2 20.1 215 113-351 24-245 (245)
25 cd02257 Peptidase_C19 Peptidas 100.0 4.6E-40 1E-44 328.6 22.1 215 121-351 21-255 (255)
26 KOG1867 Ubiquitin-specific pro 100.0 3.2E-40 6.8E-45 361.2 17.3 309 26-356 161-487 (492)
27 KOG4598 Putative ubiquitin-spe 100.0 1.1E-41 2.5E-46 364.2 2.9 267 25-358 86-446 (1203)
28 COG5207 UBP14 Isopeptidase T [ 100.0 4.8E-38 1E-42 328.0 16.8 314 4-352 276-748 (749)
29 KOG1863 Ubiquitin carboxyl-ter 100.0 4.6E-38 1E-42 374.7 13.6 305 19-359 163-491 (1093)
30 KOG1873 Ubiquitin-specific pro 100.0 7.1E-38 1.5E-42 339.8 10.1 324 27-353 206-877 (877)
31 cd02672 Peptidase_C19P A subfa 100.0 7.8E-37 1.7E-41 313.9 13.9 234 23-351 12-268 (268)
32 KOG1870 Ubiquitin C-terminal h 100.0 3.2E-35 7E-40 342.6 15.1 321 23-354 244-842 (842)
33 PF13423 UCH_1: Ubiquitin carb 100.0 4E-33 8.6E-38 291.2 22.8 280 27-332 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 2.8E-32 6E-37 274.5 14.5 176 121-351 22-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 5.6E-32 1.2E-36 300.7 14.2 318 26-354 232-573 (587)
36 KOG1871 Ubiquitin-specific pro 100.0 1.3E-28 2.8E-33 252.6 12.5 319 24-354 26-420 (420)
37 KOG1872 Ubiquitin-specific pro 99.9 7.9E-29 1.7E-33 260.3 6.9 299 23-353 102-469 (473)
38 KOG2026 Spindle pole body prot 99.9 2.7E-23 5.7E-28 212.6 12.0 280 27-353 135-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 1.6E-18 3.5E-23 192.6 13.3 300 24-350 497-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.4 1.7E-06 3.6E-11 86.1 11.4 132 167-332 120-253 (275)
41 KOG1864 Ubiquitin-specific pro 97.0 0.0015 3.3E-08 74.2 7.3 112 29-140 34-152 (587)
42 KOG3556 Familial cylindromatos 96.7 0.00048 1E-08 74.4 0.4 101 23-138 365-472 (724)
43 KOG1887 Ubiquitin carboxyl-ter 96.5 0.00049 1.1E-08 78.5 -1.1 218 121-353 548-790 (806)
44 PF08715 Viral_protease: Papai 95.2 0.24 5.2E-06 52.4 12.1 76 27-138 103-179 (320)
45 PF05408 Peptidase_C28: Foot-a 89.3 0.16 3.5E-06 48.6 1.1 52 298-359 130-181 (193)
46 PF05408 Peptidase_C28: Foot-a 77.5 8.3 0.00018 37.3 7.0 22 27-48 34-55 (193)
47 PF10163 EnY2: Transcription f 76.6 3.1 6.7E-05 35.4 3.6 30 573-602 16-45 (86)
48 PF14353 CpXC: CpXC protein 61.0 12 0.00025 34.1 4.2 48 181-238 1-48 (128)
49 COG3478 Predicted nucleic-acid 53.2 12 0.00026 29.8 2.4 36 227-262 3-40 (68)
50 KOG4479 Transcription factor e 45.0 27 0.00059 29.2 3.3 19 581-599 25-43 (92)
51 PF03292 Pox_P4B: Poxvirus P4B 40.6 36 0.00078 38.8 4.5 70 251-332 479-570 (666)
52 PF02099 Josephin: Josephin; 31.9 56 0.0012 31.1 3.8 32 297-334 99-130 (157)
53 PF01473 CW_binding_1: Putativ 28.3 61 0.0013 19.1 2.2 14 316-330 3-16 (19)
54 KOG2906 RNA polymerase III sub 28.1 1.5E+02 0.0033 25.8 5.3 72 175-249 15-86 (105)
55 cd01269 PLX Pollux (PLX) Phosp 21.5 2.6E+02 0.0056 25.6 5.8 27 293-319 81-107 (129)
56 PF03765 CRAL_TRIO_N: CRAL/TRI 20.7 1.3E+02 0.0028 22.8 3.3 34 568-601 3-42 (55)
57 PF09855 DUF2082: Nucleic-acid 20.5 79 0.0017 25.4 2.1 33 229-261 1-35 (64)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-66 Score=550.33 Aligned_cols=306 Identities=44% Similarity=0.805 Sum_probs=285.8
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 102 (618)
.+.+.||.|+|||||+||+||||.++||+.+||+...+...| . +...|++|.++..+.+.+...+..+.
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C-----~------~~~~C~lc~~q~hi~~A~~~~g~pis 173 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSC-----H------RAKFCMLCTFQAHITRALHNPGHPIS 173 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhc-----c------ccCeeeehHHHHHHHHHhcCCCCccC
Confidence 477789999999999999999999999999999999998777 3 37889999999999999999988999
Q ss_pred hHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 007094 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i 182 (618)
|..|+..|+.+...|+.|.|+||||||+++++.|+..++.-.+ .........++|+++|+|.+++++
T Consensus 174 P~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~-------------~~~~~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 174 PSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHK-------------QVDPRSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred hHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCc-------------cCCcccccceehhhhhccchhhce
Confidence 9999999999999999999999999999999999999862221 111223567899999999999999
Q ss_pred EeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeee
Q 007094 183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (618)
Q Consensus 183 ~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~ 262 (618)
+|..|.+++.++|+.++|+|+|....+|++||+.|+..|.|+|+|+|.|++|+++..|.|+++|.++|.||+|+||||+.
T Consensus 241 kC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~ 320 (545)
T KOG1865|consen 241 KCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN 320 (545)
T ss_pred ecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhcc
Q 007094 263 IFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS 342 (618)
Q Consensus 263 ~~~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s 342 (618)
...+||.+.|.||++|||.+||+.. .+...+|.|+|||+|.|.+..+|||+||||...|.||.+||+.|+.++.+.|++
T Consensus 321 ~~~gKI~K~I~fPE~LDl~PyMS~~-~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLs 399 (545)
T KOG1865|consen 321 GTGGKISKPVSFPETLDLQPYMSQP-NEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLS 399 (545)
T ss_pred CcccccccccCCcccccccccccCC-CCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceec
Confidence 8889999999999999999999943 356789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEc
Q 007094 343 EKVYILFFIRA 353 (618)
Q Consensus 343 ~~aYmLfY~R~ 353 (618)
+.||||||.|.
T Consensus 400 q~AYmLfY~R~ 410 (545)
T KOG1865|consen 400 QQAYILFYARK 410 (545)
T ss_pred ccceEEEEEee
Confidence 99999999998
No 2
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-56 Score=465.88 Aligned_cols=304 Identities=50% Similarity=0.867 Sum_probs=269.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHH
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~ 105 (618)
|+||.|+||||||||+||+|+++|+||++++...+...+ .....|++|+|..++.+++......+.|..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~ 69 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC-----------CNEGFCMMCALEAHVERALASSGPGSAPRI 69 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc-----------cCCcchHHHHHHHHHHHHHhCCCCccChHH
Confidence 689999999999999999999999999999875543211 124458899999999999888888999999
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~ 185 (618)
|..++..+.+.|..+.||||+|||.+||+.|+.++........ .........+++.++|+|.+.++++|.
T Consensus 70 ~~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~----------~~~~~~~~~~~i~~~F~g~~~~~~~C~ 139 (304)
T cd02661 70 FSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLK----------AVDPSSQETTLVQQIFGGYLRSQVKCL 139 (304)
T ss_pred HHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhccccc----------ccCccccCCChhhhcCCcEEeeeEEeC
Confidence 9999999999999999999999999999999988654322100 001122345789999999999999999
Q ss_pred CCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeeccC
Q 007094 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (618)
Q Consensus 186 ~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~~ 265 (618)
.|+..+.+.+.|..|+|++++..+|+++|+.++.+|.+++.++|.|++|++...+.++..|.++|++|+|+|+||.++..
T Consensus 140 ~C~~~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~ 219 (304)
T cd02661 140 NCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRG 219 (304)
T ss_pred CCCCCcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCc
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999998756
Q ss_pred CccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhccCCe
Q 007094 266 GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKV 345 (618)
Q Consensus 266 ~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~a 345 (618)
.|+.+.|.||..|+|.+|+... ......|+|+|||+|.|.+.++|||++|+|.++++||+|||+.|+++++++|++..|
T Consensus 220 ~Ki~~~v~f~~~L~l~~~~~~~-~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~a 298 (304)
T cd02661 220 GKINKQISFPETLDLSPYMSQP-NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKA 298 (304)
T ss_pred cccCCeEecCCeechhhccccC-CCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCc
Confidence 8999999999999999998753 245789999999999997679999999999988999999999999999999999999
Q ss_pred EEEEEE
Q 007094 346 YILFFI 351 (618)
Q Consensus 346 YmLfY~ 351 (618)
|||||.
T Consensus 299 Yil~Y~ 304 (304)
T cd02661 299 YILFYI 304 (304)
T ss_pred EEEEeC
Confidence 999994
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-56 Score=472.55 Aligned_cols=298 Identities=26% Similarity=0.445 Sum_probs=254.3
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHHHH
Q 007094 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (618)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~~~ 107 (618)
||.|+||||||||+||+|+++|+||++++............ .. .+......+++++|+.+|..++.+....++|..|.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKN-MP-PDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCccccccccc-cc-ccCCcccchHHHHHHHHHHHHHhCCCceEChHHHH
Confidence 89999999999999999999999999998765432110000 00 00001235788999999999998888899999999
Q ss_pred HHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCC
Q 007094 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (618)
Q Consensus 108 ~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C 187 (618)
.++. |..++||||+|||..||+.|++++..... ....++|.++|.|.+...++|..|
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~------------------~~~~~~i~~~F~G~~~~~~~C~~C 135 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN------------------PDLKNIVQDLFRGEYSYVTQCSKC 135 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccC------------------CcccchhhhhcceEEEEEEEeCCC
Confidence 8874 66789999999999999999988753211 123478999999999999999999
Q ss_pred CCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc---
Q 007094 188 GAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--- 264 (618)
Q Consensus 188 ~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~--- 264 (618)
+..+.+.|+|+.|+|++++..+|+++|+.|+.+|.++|+++|.|++|+....+.|+..|.++|+||+|||+||.++.
T Consensus 136 ~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~ 215 (324)
T cd02668 136 GRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTG 215 (324)
T ss_pred CCccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred -CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEecCCceeecchhhh--
Q 007094 265 -GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEV-- 340 (618)
Q Consensus 265 -~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~-~~~W~~fNDs~Vt~v~~~ev-- 340 (618)
..|++..|.||..|||.+|+.... .....|+|+|||+|.|.++++|||+||+|+. .++||+|||+.|++++++.+
T Consensus 216 ~~~Ki~~~v~fp~~Ldl~~~~~~~~-~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~ 294 (324)
T cd02668 216 AKKKLNASISFPEILDMGEYLAESD-EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKL 294 (324)
T ss_pred cceeCCcEEECCCeEechhhccccc-CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhc
Confidence 369999999999999999986543 4567899999999999778999999999985 48999999999999987765
Q ss_pred -------------------ccCCeEEEEEE
Q 007094 341 -------------------LSEKVYILFFI 351 (618)
Q Consensus 341 -------------------~s~~aYmLfY~ 351 (618)
.+..||||||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 295 GNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccccccccccccCCCccccCceEEEEeC
Confidence 24689999996
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-56 Score=466.37 Aligned_cols=286 Identities=30% Similarity=0.481 Sum_probs=246.1
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCC--CccChHH
Q 007094 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL--TLDAPAK 105 (618)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~i~p~~ 105 (618)
||.|+||||||||+||+|++ .++++.|..+|..++.... ..++|..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~ 48 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------------------ENLLTCLKDLFESISEQKKRTGVISPKK 48 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHH
Confidence 89999999999999999987 1245677777777776543 5699999
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~ 185 (618)
|+++|....+.|..++||||+|||..||+.|++++....+..... .............++|.++|+|.+.++++|.
T Consensus 49 f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~ 124 (300)
T cd02663 49 FITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN----RKLNNNNNAEPQPTWVHEIFQGILTNETRCL 124 (300)
T ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc----ccccccccCCcCCCChhhhCceEEEeeEEeC
Confidence 999999989999999999999999999999999987654322111 0000111123346789999999999999999
Q ss_pred CCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc-
Q 007094 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF- 264 (618)
Q Consensus 186 ~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~- 264 (618)
.|+..+.+.|+|++|+|+++...+|+++|+.|+.+|.++++++|.|++|+..+.+.|+..|.++|+||+|||+||.++.
T Consensus 125 ~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~ 204 (300)
T cd02663 125 TCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQ 204 (300)
T ss_pred CCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred ---CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhc
Q 007094 265 ---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVL 341 (618)
Q Consensus 265 ---~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~ 341 (618)
..|++..|.||..|+|..+... .......|+|+|||+|.|.++++|||+||+|. .+.||+|||+.|+++++++|.
T Consensus 205 ~~~~~Ki~~~v~fp~~L~~~~~~~~-~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~ 282 (300)
T cd02663 205 LNRYIKLFYRVVFPLELRLFNTTDD-AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVE 282 (300)
T ss_pred cCCceecCceEecCcEEeccccccc-cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHH
Confidence 3699999999999999876432 22446799999999999976899999999999 899999999999999999886
Q ss_pred --------cCCeEEEEEE
Q 007094 342 --------SEKVYILFFI 351 (618)
Q Consensus 342 --------s~~aYmLfY~ 351 (618)
+.+||||||+
T Consensus 283 ~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 283 EFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred HhcCCCCCCCceEEEEeC
Confidence 5789999995
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-56 Score=469.22 Aligned_cols=301 Identities=33% Similarity=0.585 Sum_probs=260.9
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcC-CCCccChHH
Q 007094 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV-DLTLDAPAK 105 (618)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~p~~ 105 (618)
+||.|+||||||||+||+|+++|+||++++...+...+ .......|+.|+|..++..++.. ....+.|..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~---------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 71 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTC---------LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPIN 71 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccc---------ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHH
Confidence 69999999999999999999999999999886543211 01224568899999999988443 446789999
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~ 185 (618)
|+.++....+.|..+.||||+|||..||+.|++++....+... ......++|.++|+|.+...++|.
T Consensus 72 ~l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~-------------~~~~~~~~i~~~F~g~~~~~~~C~ 138 (328)
T cd02660 72 LLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN-------------DESHCNCIIHQTFSGSLQSSVTCQ 138 (328)
T ss_pred HHHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhccccccc-------------ccccCCceeEEecccEEEeeeEcC
Confidence 9999988888899999999999999999999998754322100 011335789999999999999999
Q ss_pred CCCCeeeeeeeeEEEEEeeccc---------------CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCC
Q 007094 186 ACGAESNKVDEIMDISLDILNS---------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSP 250 (618)
Q Consensus 186 ~C~~~s~~~E~f~~LsL~i~~~---------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP 250 (618)
.|++.+.+.++|+.|+|+++.. .+|+++|+.|+.+|.+++.+ |.|++|+....+.++..|.++|
T Consensus 139 ~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP 217 (328)
T cd02660 139 RCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLP 217 (328)
T ss_pred CCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCC
Confidence 9999999999999999999875 89999999999999999877 9999999999999999999999
Q ss_pred ceEEEEEeeeeecc---CCccceeEeccchhhhcccccc--------CCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc
Q 007094 251 NILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCK--------ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD 319 (618)
Q Consensus 251 ~iLiI~LkRF~~~~---~~K~~~~V~fP~~LdL~~~~~~--------~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~ 319 (618)
++|+|||+||.++. ..|+...|.||.+|||.+|+.. ........|+|+|||+|.| +.++|||++|+|.
T Consensus 218 ~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~~~~~~ 296 (328)
T cd02660 218 PVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQ 296 (328)
T ss_pred ceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeec-cCCCCcEEEEEEC
Confidence 99999999999854 3699999999999999999874 2234577999999999999 5889999999999
Q ss_pred CCCceEEecCCceeecchhhhccCCeEEEEEE
Q 007094 320 AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (618)
Q Consensus 320 ~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~ 351 (618)
.+++||+|||+.|+++++++|+...||||||.
T Consensus 297 ~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 297 GDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 77999999999999999999999999999994
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-56 Score=469.18 Aligned_cols=276 Identities=33% Similarity=0.635 Sum_probs=239.1
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHH-H
Q 007094 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK-I 106 (618)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~-~ 106 (618)
||.|+||||||||+||+|+++|+||+++++...... ....+..++|+.++..+.......+.|.. +
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~-------------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~ 67 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL-------------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYF 67 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc-------------CCcchHHHHHHHHHHHHhhcCCcccCCHHHH
Confidence 899999999999999999999999999998764311 12234567788877777666556666665 6
Q ss_pred HHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCC
Q 007094 107 QSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLA 186 (618)
Q Consensus 107 ~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~ 186 (618)
+.++. .+.|..++||||+||+..||+.|+. +|.++|+|.+.+.++|..
T Consensus 68 l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~------------------------------~i~~~F~G~~~~~i~C~~ 115 (327)
T cd02664 68 LEASR--PPWFTPGSQQDCSEYLRYLLDRLHT------------------------------LIEKMFGGKLSTTIRCLN 115 (327)
T ss_pred HHHhc--ccccCCCCcCCHHHHHHHHHHHHHH------------------------------HHHhhCcEEeEeEEEcCC
Confidence 55543 4678889999999999999999982 477899999999999999
Q ss_pred CCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeeccC-
Q 007094 187 CGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG- 265 (618)
Q Consensus 187 C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~~- 265 (618)
|+..+.+.|+|..|+|+++ +|+++|+.|+.+|.++|+++|+|++|++...+.++..|.++|+||+|||+||.++..
T Consensus 116 C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~ 192 (327)
T cd02664 116 CNSTSARTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKT 192 (327)
T ss_pred CCCEecccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcccc
Confidence 9999999999999999998 899999999999999999999999999999999999999999999999999998542
Q ss_pred ---CccceeEeccchhhhccccccC------------------CCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC---
Q 007094 266 ---GKIDKAIAFEEVLVLSSFMCKA------------------SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI--- 321 (618)
Q Consensus 266 ---~K~~~~V~fP~~LdL~~~~~~~------------------~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~--- 321 (618)
.|+++.|.||..|||..++... .......|+|+|||+|.|.++++|||+||+|...
T Consensus 193 ~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~ 272 (327)
T cd02664 193 HVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDAD 272 (327)
T ss_pred CcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccc
Confidence 6999999999999999886311 1124578999999999997789999999999854
Q ss_pred ------------------CceEEecCCceeecchhhhcc-------CCeEEEEEE
Q 007094 322 ------------------GRWYCCNDSYVSVSTLQEVLS-------EKVYILFFI 351 (618)
Q Consensus 322 ------------------~~W~~fNDs~Vt~v~~~ev~s-------~~aYmLfY~ 351 (618)
+.||+|||+.|++++.++|.+ .+||||||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 273 STGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred cccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 799999999999999999986 899999995
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-55 Score=464.52 Aligned_cols=280 Identities=30% Similarity=0.480 Sum_probs=237.4
Q ss_pred ccCCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCC
Q 007094 19 KRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL 98 (618)
Q Consensus 19 ~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (618)
+|+..-+++||.|+||||||||+||+|+++|+||+++......... ......+...+..++....
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~---------------~~~~q~~~~~l~~~~~~~~ 81 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISS---------------VEQLQSSFLLNPEKYNDEL 81 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCc---------------HHHHHHHHHHHHHHHhhcc
Confidence 4555566699999999999999999999999999998765311100 0011112222333344444
Q ss_pred CccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEE
Q 007094 99 TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGAL 178 (618)
Q Consensus 99 ~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l 178 (618)
....|..|+++++...+.|..+.||||+|||..||+.|+. .|.++|+|.+
T Consensus 82 ~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~------------------------------~i~~~F~g~~ 131 (332)
T cd02671 82 ANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE------------------------------LVEKDFQGQL 131 (332)
T ss_pred cccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHH------------------------------HHHhhhceEE
Confidence 5567999999999999999999999999999999999984 4668999999
Q ss_pred EEEEEeCCCCCeeeeeeeeEEEEEeeccc-------------------CCHHHHHHhcccccccCCCCcccCCccCccce
Q 007094 179 QSQVKCLACGAESNKVDEIMDISLDILNS-------------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (618)
Q Consensus 179 ~~~i~C~~C~~~s~~~E~f~~LsL~i~~~-------------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~ 239 (618)
.+.++|..|+..+.+.|+|++|+|+++.. .+|++||+.|+.+|.++|+|+|.|++|+..+.
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~ 211 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTE 211 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCcee
Confidence 99999999999999999999999999864 58999999999999999999999999999999
Q ss_pred eEEEEEEeeCCceEEEEEeeeeecc--------CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCC
Q 007094 240 ARKQMSILQSPNILVIQLKRFEGIF--------GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSG 311 (618)
Q Consensus 240 a~k~~~i~~lP~iLiI~LkRF~~~~--------~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sG 311 (618)
+.|+..|.++|+||+|||+||.+.. ..|+++.|.||..|++.++... .....|+|+|||+|.|.+.++|
T Consensus 212 a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~---~~~~~Y~L~~VI~H~G~~~~~G 288 (332)
T cd02671 212 AERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK---PKNDVYRLFAVVMHSGATISSG 288 (332)
T ss_pred EEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCC---CCCCeEEEEEEEEEcCCCCCCC
Confidence 9999999999999999999999631 3699999999999999877543 3467999999999999778999
Q ss_pred cEEEEEEcCCCceEEecCCceeecchhhhc---------cCCeEEEEEE
Q 007094 312 HYYAYIKDAIGRWYCCNDSYVSVSTLQEVL---------SEKVYILFFI 351 (618)
Q Consensus 312 HY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~---------s~~aYmLfY~ 351 (618)
||+||+| ||+|||+.|++++++++. ..+||||||+
T Consensus 289 HY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 289 HYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred eEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999999 999999999999887775 2689999995
No 8
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-54 Score=448.36 Aligned_cols=246 Identities=39% Similarity=0.727 Sum_probs=223.4
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHHHH
Q 007094 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (618)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~~~ 107 (618)
||.|+||||||||+||+|+++|+||++++. .|..|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------------------~P~~~~ 36 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------------------TPKELF 36 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------------------CHHHHH
Confidence 899999999999999999999999999864 566677
Q ss_pred HHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCC
Q 007094 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (618)
Q Consensus 108 ~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C 187 (618)
..+....+.|..++||||+|||..||+.|+. +|.++|.|.+.+.++|..|
T Consensus 37 ~~l~~~~~~f~~~~QqDA~Efl~~lld~l~~------------------------------~i~~~F~G~~~~~i~C~~C 86 (279)
T cd02667 37 SQVCRKAPQFKGYQQQDSHELLRYLLDGLRT------------------------------FIDSIFGGELTSTIMCESC 86 (279)
T ss_pred HHHHHhhHhhcCCchhhHHHHHHHHHHHHHH------------------------------hhhhhcceEEEEEEEcCCC
Confidence 7777777889999999999999999999982 4778999999999999999
Q ss_pred CCeeeeeeeeEEEEEeecc----cCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeec
Q 007094 188 GAESNKVDEIMDISLDILN----SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI 263 (618)
Q Consensus 188 ~~~s~~~E~f~~LsL~i~~----~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~ 263 (618)
+..+.+.|+|+.|+|+++. ..+|++||+.|+.+|.++++++|.|++|++ +.++..|.++|++|+|||+||.++
T Consensus 87 ~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~ 163 (279)
T cd02667 87 GTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQP 163 (279)
T ss_pred CCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccC
Confidence 9999999999999998753 578999999999999999999999999987 889999999999999999999985
Q ss_pred cC---CccceeEeccchhhhccccccC----CCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC----------------
Q 007094 264 FG---GKIDKAIAFEEVLVLSSFMCKA----SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---------------- 320 (618)
Q Consensus 264 ~~---~K~~~~V~fP~~LdL~~~~~~~----~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~---------------- 320 (618)
.. .|+++.|.||..|||.+|+... .......|+|+|||+|.|. .++|||+||+|..
T Consensus 164 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~-~~~GHY~a~v~~~~~~~~~~~~~~~~~~~ 242 (279)
T cd02667 164 RSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGT-MRSGHYVAYVKVRPPQQRLSDLTKSKPAA 242 (279)
T ss_pred cccCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCC-CCCCEeEEEEEcCcccccccccccccccc
Confidence 43 7999999999999999998762 2335679999999999995 5999999999973
Q ss_pred ------CCceEEecCCceeecchhhhccCCeEEEEEE
Q 007094 321 ------IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (618)
Q Consensus 321 ------~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~ 351 (618)
++.||+|||+.|++++.++|++..||||||+
T Consensus 243 ~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 243 DEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred ccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 5799999999999999999999999999995
No 9
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-53 Score=451.01 Aligned_cols=295 Identities=29% Similarity=0.513 Sum_probs=250.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHH
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~ 105 (618)
++||.|+||||||||+||+|+++|+||++++...... ......++.+.++.+|..+.......+.|..
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~------------~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~ 69 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE------------DDDDNKSVPLALQRLFLFLQLSESPVKTTEL 69 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc------------cCcccccHHHHHHHHHHHHHhCCccccCcch
Confidence 4899999999999999999999999999999863211 0113456788999998888876655555554
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~ 185 (618)
+..+.......|..++||||+|||..||+.|+.++... ...++|.++|.|.+...++|.
T Consensus 70 ~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------~~~~~i~~lF~g~~~~~~~C~ 128 (334)
T cd02659 70 TDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT---------------------GQEGLIKNLFGGKLVNYIICK 128 (334)
T ss_pred hheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccC---------------------cccchhhhhCceEEEeEEEec
Confidence 43222222456778999999999999999999876421 123689999999999999999
Q ss_pred CCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc-
Q 007094 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF- 264 (618)
Q Consensus 186 ~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~- 264 (618)
.|+..+...++|+.|+|++++..+|+++|+.|+.+|.+++.+.|.|++|++...+.++..|.++|++|+|||+||.++.
T Consensus 129 ~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~ 208 (334)
T cd02659 129 ECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFE 208 (334)
T ss_pred CCCceecccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred ---CCccceeEeccchhhhccccccCC----------CCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEecCC
Q 007094 265 ---GGKIDKAIAFEEVLVLSSFMCKAS----------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDS 330 (618)
Q Consensus 265 ---~~K~~~~V~fP~~LdL~~~~~~~~----------~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~fNDs 330 (618)
..|++..|.||..|+|.+|+.... ......|+|+|||+|.| +.++|||++|+|. .++.||+|||+
T Consensus 209 ~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~ 287 (334)
T cd02659 209 TMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDD 287 (334)
T ss_pred cCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCc
Confidence 368999999999999999986542 23567899999999999 6899999999998 47999999999
Q ss_pred ceeecchhhhc----------------------cCCeEEEEEEEcC
Q 007094 331 YVSVSTLQEVL----------------------SEKVYILFFIRAN 354 (618)
Q Consensus 331 ~Vt~v~~~ev~----------------------s~~aYmLfY~R~~ 354 (618)
.|+++++++|+ +..||||||+|.+
T Consensus 288 ~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 288 VVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 99999999985 2469999999965
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-53 Score=446.82 Aligned_cols=277 Identities=31% Similarity=0.423 Sum_probs=239.4
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCC----------
Q 007094 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD---------- 97 (618)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------- 97 (618)
||.|+||||||||+||+|+++|+||++++.......+ .......++++++.+++..++...
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~---------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 71 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPS---------DVVDPANDLNCQLIKLADGLLSGRYSKPASLKSE 71 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCC---------CcCCccccHHHHHHHHHHHhcCCCcCCCcccccc
Confidence 8999999999999999999999999999874322111 011245578899998888776532
Q ss_pred ----CCccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccc
Q 007094 98 ----LTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEI 173 (618)
Q Consensus 98 ----~~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~l 173 (618)
...+.|..|..++....+.|..++||||+||+++||+.|++++... ....+.++
T Consensus 72 ~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------------~~~~~~~~ 129 (311)
T cd02658 72 NDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN----------------------LGLNPNDL 129 (311)
T ss_pred ccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc----------------------ccCCchhh
Confidence 2468999999999999999999999999999999999999886411 12457899
Q ss_pred cceEEEEEEEeCCCCCeeeeeeeeEEEEEeeccc--------------CCHHHHHHhcccccccCCCCcccCCccCccce
Q 007094 174 FGGALQSQVKCLACGAESNKVDEIMDISLDILNS--------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (618)
Q Consensus 174 F~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~--------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~ 239 (618)
|+|.+.+.++|..|+..+.+.++|.+|+|+++.. .+|+++|+.|+.+|.++ +.|++|+....
T Consensus 130 f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~ 205 (311)
T cd02658 130 FKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTT 205 (311)
T ss_pred eEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCccc
Confidence 9999999999999999999999999999999753 38999999999999998 68999999999
Q ss_pred eEEEEEEeeCCceEEEEEeeeeecc---CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEE
Q 007094 240 ARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAY 316 (618)
Q Consensus 240 a~k~~~i~~lP~iLiI~LkRF~~~~---~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ay 316 (618)
+.++.+|.++|+||+|||+||.+.. ..|+...|.||..| ....|+|+|||+|.|.+.++|||++|
T Consensus 206 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l------------~~~~Y~L~~vI~H~G~~~~~GHY~~~ 273 (311)
T cd02658 206 ATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL------------GPGKYELIAFISHKGTSVHSGHYVAH 273 (311)
T ss_pred EEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC------------CCCcEEEEEEEEccCCCCCCcceEEE
Confidence 9999999999999999999999832 35889999999877 24589999999999977999999999
Q ss_pred EEcC---CCceEEecCCceeecchhhhccCCeEEEEEE
Q 007094 317 IKDA---IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (618)
Q Consensus 317 vr~~---~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~ 351 (618)
+|.. .++||+|||+.|++++..++.+.+||||||+
T Consensus 274 vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 274 IKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9995 3899999999999999999999999999996
No 11
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-53 Score=444.42 Aligned_cols=283 Identities=26% Similarity=0.359 Sum_probs=244.6
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHHHH
Q 007094 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (618)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~~~ 107 (618)
||.|+||||||||+||+|+++|+||++++........ ......+++++|.+++..+.... ..+.|..|+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~----------~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~ 69 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRG----------ANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFL 69 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccc----------cccchhHHHHHHHHHHHHHHhCC-CcCCcHHHH
Confidence 8999999999999999999999999999886543210 11234568889998888887655 489999999
Q ss_pred HHHHhhhcccC------CCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEE
Q 007094 108 SCLRIFAEHFK------CGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQ 181 (618)
Q Consensus 108 ~~L~~l~~~f~------~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~ 181 (618)
..|....+.|. .++||||+||+..||+.|++++... ....+.|.++|+|.+.+.
T Consensus 70 ~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~--------------------~~~~~~i~~~F~g~~~~~ 129 (305)
T cd02657 70 QLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA--------------------GSKGSFIDQLFGIELETK 129 (305)
T ss_pred HHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc--------------------CCCCcHHHHhhceEEEEE
Confidence 99998888884 4599999999999999999986421 123578999999999999
Q ss_pred EEeCCCC-CeeeeeeeeEEEEEeeccc---CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEE
Q 007094 182 VKCLACG-AESNKVDEIMDISLDILNS---CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQL 257 (618)
Q Consensus 182 i~C~~C~-~~s~~~E~f~~LsL~i~~~---~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~L 257 (618)
++|..|+ ..+.+.|+|..|+|+++.. .+|+++|+.++.++.. ..|+.|+....+.|+.+|.++|++|+|||
T Consensus 130 ~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~L 204 (305)
T cd02657 130 MKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQF 204 (305)
T ss_pred EEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEE
Confidence 9999999 7899999999999999875 6899999999876654 46899998888999999999999999999
Q ss_pred eeeeecc----CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEecCCce
Q 007094 258 KRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYV 332 (618)
Q Consensus 258 kRF~~~~----~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~-~~W~~fNDs~V 332 (618)
+||.++. ..|+++.|.||..|||.+|+. ....|+|+|||+|.|.++++|||+||+|... +.||+|||+.|
T Consensus 205 kRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V 279 (305)
T cd02657 205 VRFFWKRDIQKKAKILRKVKFPFELDLYELCT-----PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKV 279 (305)
T ss_pred ECCccccccCceeecCcEEECCceEecccccC-----CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCce
Confidence 9999743 258899999999999999986 3469999999999997789999999999955 89999999999
Q ss_pred eecchhhhcc-------CCeEEEEEE
Q 007094 333 SVSTLQEVLS-------EKVYILFFI 351 (618)
Q Consensus 333 t~v~~~ev~s-------~~aYmLfY~ 351 (618)
++++.++|.. ..||||||+
T Consensus 280 ~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 280 SEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9999999974 689999996
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-50 Score=443.95 Aligned_cols=293 Identities=21% Similarity=0.325 Sum_probs=238.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCC--CCccCh
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD--LTLDAP 103 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~i~p 103 (618)
++||.|+||||||||+||+|+++|+||++++...+.... .....++.+++..++..++... ...++|
T Consensus 119 ~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~-----------~~~~~~l~~~l~~l~~kl~~~~~~~~~isP 187 (440)
T cd02669 119 FVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI-----------KDRKSELVKRLSELIRKIWNPRNFKGHVSP 187 (440)
T ss_pred ccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc-----------cCCCcHHHHHHHHHHHHHhccccCCCccCH
Confidence 499999999999999999999999999999976542211 0123357778888888887654 368999
Q ss_pred HHHHHHHHhhh-cccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 007094 104 AKIQSCLRIFA-EHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (618)
Q Consensus 104 ~~~~~~L~~l~-~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i 182 (618)
..|+.++.... +.|..++||||+|||.+||+.|++++.... ....++|+++|+|++.+.+
T Consensus 188 ~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~-------------------~~~~~ii~~~F~G~l~~~~ 248 (440)
T cd02669 188 HELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK-------------------KPNSSIIHDCFQGKVQIET 248 (440)
T ss_pred HHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC-------------------CCCCCcceeccCceEEEEE
Confidence 99999998764 678899999999999999999999875321 1245899999999999999
Q ss_pred EeCCCC---------------CeeeeeeeeEEEEEeecccCCHHH-----HHHhcccccccCCCCcccCCccCccceeEE
Q 007094 183 KCLACG---------------AESNKVDEIMDISLDILNSCSLKE-----AMQKFFQPEVLDGNNKYKCDNCKKLVSARK 242 (618)
Q Consensus 183 ~C~~C~---------------~~s~~~E~f~~LsL~i~~~~sLed-----~L~~~~~~E~l~g~nky~C~~C~~~~~a~k 242 (618)
+|..|. ..+.+.++|++|+|+|+....+.+ +|..+...|.++ +|.|+.|.....+.|
T Consensus 249 ~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k 325 (440)
T cd02669 249 QKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLK 325 (440)
T ss_pred EeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceE
Confidence 987654 245678999999999987533222 222233334444 388899998889999
Q ss_pred EEEEeeCCceEEEEEeeeeecc--CCccceeEeccch-hhhccccccCC--CCCCCceEEEEEEEeecCCCCCCcEEEEE
Q 007094 243 QMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEV-LVLSSFMCKAS--QDPQPEYKLFGTIVHSGFSPDSGHYYAYI 317 (618)
Q Consensus 243 ~~~i~~lP~iLiI~LkRF~~~~--~~K~~~~V~fP~~-LdL~~~~~~~~--~~~~~~Y~L~aVI~H~G~s~~sGHY~ayv 317 (618)
+++|.++|+||+||||||.+.. ..|+.+.|.||.. |||.+|+.... ......|+|+|||+|.|...++|||+||+
T Consensus 326 ~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v 405 (440)
T cd02669 326 RYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQL 405 (440)
T ss_pred EEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEE
Confidence 9999999999999999999843 3699999999986 89999986432 24567999999999999544999999999
Q ss_pred Ec-CCCceEEecCCceeecchhhhccCCeEEEEEE
Q 007094 318 KD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (618)
Q Consensus 318 r~-~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~ 351 (618)
|+ ..++||+|||+.|++++.++|+..+||||||+
T Consensus 406 ~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 406 RHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 98 47899999999999999999999999999995
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-51 Score=435.17 Aligned_cols=323 Identities=29% Similarity=0.511 Sum_probs=273.0
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 102 (618)
.|. +||.|+||||||||+||||.|++++|+|++.-.+.... +..+ +..-..........++.+++.....++.
T Consensus 263 ~Gt-cGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~i---Ne~N---plgmhg~vAsayadLik~ly~~~~haf~ 335 (823)
T COG5560 263 AGT-CGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESI---NEEN---PLGMHGSVASAYADLIKQLYDGNLHAFT 335 (823)
T ss_pred ccc-cceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhh---cccC---ccchhhhHHHHHHHHHHHHhCccccccC
Confidence 454 89999999999999999999999999999986664332 1111 2223333444556667777777789999
Q ss_pred hHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCC-----------CCCcccCCCCccc
Q 007094 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGG-----------GGETINGGSSVVK 171 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~s~I~ 171 (618)
|..|...++.++..|.++.|||.+||+.+|||.||++++++.+..........++. |+.....+.++|.
T Consensus 336 Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiIt 415 (823)
T COG5560 336 PSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIIT 415 (823)
T ss_pred hHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999999999999988764433322211111 1222567889999
Q ss_pred cccceEEEEEEEeCCCCCeeeeeeeeEEEEEeeccc--------------------------------------------
Q 007094 172 EIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS-------------------------------------------- 207 (618)
Q Consensus 172 ~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~-------------------------------------------- 207 (618)
++|.|...++..|..|+.++.+++||++|+||+|-.
T Consensus 416 dLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~g 495 (823)
T COG5560 416 DLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLG 495 (823)
T ss_pred HHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999720
Q ss_pred --------------------------------------------------------------------------------
Q 007094 208 -------------------------------------------------------------------------------- 207 (618)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (618)
T Consensus 496 c~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~ 575 (823)
T COG5560 496 CFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIY 575 (823)
T ss_pred ccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007094 208 -------------------------------------------------------------------------------- 207 (618)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (618)
T Consensus 576 ~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~ 655 (823)
T COG5560 576 DKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLS 655 (823)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhh
Confidence
Q ss_pred -------------------CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeee--ccCC
Q 007094 208 -------------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG--IFGG 266 (618)
Q Consensus 208 -------------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~--~~~~ 266 (618)
.+|++||..|.++|.+...+.|+|+.|+....|.|++.|+++|.||+||||||+. .+..
T Consensus 656 lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrd 735 (823)
T COG5560 656 LFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735 (823)
T ss_pred hhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchh
Confidence 1799999999999999988899999999999999999999999999999999997 4457
Q ss_pred ccceeEecc-chhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEecCCceeecchhhhccCC
Q 007094 267 KIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEK 344 (618)
Q Consensus 267 K~~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~-~~~W~~fNDs~Vt~v~~~ev~s~~ 344 (618)
|+.+-|+|| ..|||+.+...- +++.-.|+|+||-.|+| ...+|||+||+|+. +++||+|||++|+++.+++.+.+.
T Consensus 736 KiddlVeyPiddldLs~~~~~~-~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtss 813 (823)
T COG5560 736 KIDDLVEYPIDDLDLSGVEYMV-DDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSS 813 (823)
T ss_pred hhhhhhccccccccccceEEee-cCcceEEEeeecccccc-ccCCcceeeeeecccCCceEEecCccccccCccccccce
Confidence 999999999 679998776544 34458899999999999 79999999999994 679999999999999999999999
Q ss_pred eEEEEEEEcC
Q 007094 345 VYILFFIRAN 354 (618)
Q Consensus 345 aYmLfY~R~~ 354 (618)
||+|||+|+.
T Consensus 814 aYvLFyrrk~ 823 (823)
T COG5560 814 AYVLFYRRKS 823 (823)
T ss_pred eEEEEEEecC
Confidence 9999999963
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-49 Score=392.46 Aligned_cols=331 Identities=25% Similarity=0.388 Sum_probs=250.0
Q ss_pred ccccccCCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccC-chHHHHHHHHHHh
Q 007094 15 LLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRE-CPFCILEKRIVRS 93 (618)
Q Consensus 15 ~~~~~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 93 (618)
+..+.+++..+|+||.|.|||||||++||||+.+..+...|........ ++-+. +..... ..+..+..+...+
T Consensus 60 ~~~s~~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~---INtd~---prg~~g~~~~k~F~~l~~~~ 133 (415)
T COG5533 60 MVVSKRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQN---INTDF---PRGKPGSNAFKQFIALYETP 133 (415)
T ss_pred chhhhhhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhh---ccCCC---CCCCcchhHHHHHHHHHhcc
Confidence 5566777889999999999999999999999999999885544332211 11111 111111 2333444444445
Q ss_pred hcCCCCccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCC---------CCC--CCCCc
Q 007094 94 LSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSS---------GGG--GGGET 162 (618)
Q Consensus 94 ~~~~~~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~---------~~~--~~~~~ 162 (618)
.......++|..|+..+..+++.|....|||+|||+.++||.||++++......+...... ... ..-+|
T Consensus 134 ~~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EW 213 (415)
T COG5533 134 GCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEW 213 (415)
T ss_pred ccCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhh
Confidence 5555678999999999999999999999999999999999999999875443211110000 000 00112
Q ss_pred ---ccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeecc--cCCHHHHHHhcccccccCCCCcccCCccCcc
Q 007094 163 ---INGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKL 237 (618)
Q Consensus 163 ---~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~l~g~nky~C~~C~~~ 237 (618)
.....++|.+.|.|+..+++.|..|+++|++..+|..|.++++. ...|++||++|.++|.++|.+.|+|++|+++
T Consensus 214 n~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k 293 (415)
T COG5533 214 NLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRK 293 (415)
T ss_pred HHhhccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhccc
Confidence 45667899999999999999999999999999999999999987 3569999999999999999999999999999
Q ss_pred ceeEEEEEEeeCCceEEEEEeeeee--ccCCccceeE----eccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCC
Q 007094 238 VSARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAI----AFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSG 311 (618)
Q Consensus 238 ~~a~k~~~i~~lP~iLiI~LkRF~~--~~~~K~~~~V----~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sG 311 (618)
..++|++.|.++|++|||+|+||.. ....|++.+- .++-+..+.+.+.....-.+..|.|+|||||.| +.++|
T Consensus 294 ~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G-~L~gG 372 (415)
T COG5533 294 ESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG-TLNGG 372 (415)
T ss_pred ccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc-eecCc
Confidence 9999999999999999999999984 1112333321 122222222222222233567999999999999 79999
Q ss_pred cEEEEEEcCCCceEEecCCceeecchhhhc-cCCeEEEEEEEc
Q 007094 312 HYYAYIKDAIGRWYCCNDSYVSVSTLQEVL-SEKVYILFFIRA 353 (618)
Q Consensus 312 HY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~-s~~aYmLfY~R~ 353 (618)
||+++|+. ++.|+.|||+.|++++...-. ...+|+|||+|.
T Consensus 373 HY~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 373 HYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred eeEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 99999999 799999999999999754443 457999999995
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-48 Score=391.36 Aligned_cols=209 Identities=35% Similarity=0.635 Sum_probs=189.9
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHHHH
Q 007094 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (618)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~~~ 107 (618)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999876410
Q ss_pred HHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCC
Q 007094 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (618)
Q Consensus 108 ~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C 187 (618)
+||||+|||..||+.|+. .+.++|.|.+.+.++|..|
T Consensus 33 -------------~QqDa~EFl~~ll~~l~~------------------------------~i~~~F~g~~~~~i~C~~C 69 (240)
T cd02662 33 -------------EQQDAHELFQVLLETLEQ------------------------------LLKFPFDGLLASRIVCLQC 69 (240)
T ss_pred -------------hhcCHHHHHHHHHHHHHH------------------------------hccCccccEEEEEEEeCCC
Confidence 799999999999999993 3668899999999999999
Q ss_pred CCeee-eeeeeEEEEEeeccc-----CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeee
Q 007094 188 GAESN-KVDEIMDISLDILNS-----CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFE 261 (618)
Q Consensus 188 ~~~s~-~~E~f~~LsL~i~~~-----~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~ 261 (618)
+..+. +.|+|..|+|+++.. .+|+++|+.|+.+|.+++ |.|++| +..|.++|++|+|||+||.
T Consensus 70 ~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~ 138 (240)
T cd02662 70 GESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSV 138 (240)
T ss_pred CCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEE
Confidence 99876 489999999999975 599999999999999987 999999 5679999999999999999
Q ss_pred ecc---CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC------------------
Q 007094 262 GIF---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA------------------ 320 (618)
Q Consensus 262 ~~~---~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~------------------ 320 (618)
++. ..|+++.|.||..| ....|+|+|||+|.|. ..+|||+||+|.+
T Consensus 139 ~~~~~~~~K~~~~v~fp~~l------------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~ 205 (240)
T cd02662 139 FDGRGTSTKNSCKVSFPERL------------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGP 205 (240)
T ss_pred EcCCCceeeeccEEECCCcc------------CCceEEEEEEEEEecc-CCCceEEEEEeCCCccccccccccccccccc
Confidence 854 25999999999988 3569999999999995 5999999999985
Q ss_pred ---CCceEEecCCceeecchhhh-ccCCeEEEEEE
Q 007094 321 ---IGRWYCCNDSYVSVSTLQEV-LSEKVYILFFI 351 (618)
Q Consensus 321 ---~~~W~~fNDs~Vt~v~~~ev-~s~~aYmLfY~ 351 (618)
.+.||+|||+.|++++.++| .+.+||||||+
T Consensus 206 ~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 206 SSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred CccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 38999999999999999999 88999999995
No 16
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-45 Score=369.79 Aligned_cols=200 Identities=35% Similarity=0.638 Sum_probs=183.4
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEE
Q 007094 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (618)
Q Consensus 121 ~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~L 200 (618)
+||||+||+++||+.|+ +.+.++|+|.+...++|..|+..+.+.++|..|
T Consensus 21 ~QqDa~Ef~~~ll~~l~------------------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l 70 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH------------------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYL 70 (230)
T ss_pred hhhhHHHHHHHHHHHHh------------------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEE
Confidence 79999999999999998 247789999999999999999999999999999
Q ss_pred EEeecccC------CHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc--CCccceeE
Q 007094 201 SLDILNSC------SLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAI 272 (618)
Q Consensus 201 sL~i~~~~------sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~--~~K~~~~V 272 (618)
+|+++... +|+++|+.++.+|.+++.+++.|++|+....+.++..|.++|++|+|+|+||.+.. ..|++..|
T Consensus 71 ~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v 150 (230)
T cd02674 71 SLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPV 150 (230)
T ss_pred EEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceE
Confidence 99998644 99999999999999999999999999999999999999999999999999999853 57999999
Q ss_pred ecc-chhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEecCCceeecchhhhccCCeEEEEE
Q 007094 273 AFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLSEKVYILFF 350 (618)
Q Consensus 273 ~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~-~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY 350 (618)
.|| +.|++.+|+.........+|+|+|||+|.|. ..+|||+||+|... ++||+|||+.|++++.+++...+||||||
T Consensus 151 ~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y 229 (230)
T cd02674 151 TFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGS-LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFY 229 (230)
T ss_pred eccccccccccccCcccCCCCceEEEEEEEEeeCC-CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEe
Confidence 999 4689998865555567789999999999995 49999999999954 89999999999999999998999999999
Q ss_pred E
Q 007094 351 I 351 (618)
Q Consensus 351 ~ 351 (618)
+
T Consensus 230 ~ 230 (230)
T cd02674 230 E 230 (230)
T ss_pred C
Confidence 6
No 17
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-47 Score=412.37 Aligned_cols=311 Identities=29% Similarity=0.467 Sum_probs=264.5
Q ss_pred ccccCCccccccCCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHH
Q 007094 9 MSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEK 88 (618)
Q Consensus 9 ~~W~~~~~~~~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (618)
+-|+....-.+.+.+|+ |||+|+|.||||||+||.|+.+..||+.+........ +.......+|++
T Consensus 177 VLWHsF~nYnSKkeTGY-VGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p-------------~grdSValaLQr 242 (1089)
T COG5077 177 VLWHSFLNYNSKKETGY-VGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHP-------------RGRDSVALALQR 242 (1089)
T ss_pred ceeecccccccccceee-eeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCC-------------CccchHHHHHHH
Confidence 46887777667777776 9999999999999999999999999999988764321 133335578999
Q ss_pred HHHHhhcCCCCccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCC
Q 007094 89 RIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSS 168 (618)
Q Consensus 89 ~~~~~~~~~~~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s 168 (618)
.|.++.... .++++.+|...+. +..+....|||.|||.+.|.|.|+...... .-..
T Consensus 243 ~Fynlq~~~-~PvdTteltrsfg--Wds~dsf~QHDiqEfnrVl~DnLEksmrgt---------------------~VEn 298 (1089)
T COG5077 243 LFYNLQTGE-EPVDTTELTRSFG--WDSDDSFMQHDIQEFNRVLQDNLEKSMRGT---------------------VVEN 298 (1089)
T ss_pred HHHHHhccC-CCcchHHhhhhcC--cccchHHHHHhHHHHHHHHHHHHHHhhcCC---------------------hhhh
Confidence 999988766 5777777765543 333444589999999999999999854321 1235
Q ss_pred ccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEee
Q 007094 169 VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQ 248 (618)
Q Consensus 169 ~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~ 248 (618)
-+..+|-|.+.+.++|.+-.+++.+.|.|++++|++++..+|++++++|...|+++|+|+|.|++-| .+.|.|..-|.+
T Consensus 299 aln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeS 377 (1089)
T COG5077 299 ALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFES 377 (1089)
T ss_pred HHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeecc
Confidence 6889999999999999999999999999999999999999999999999999999999999999975 588999999999
Q ss_pred CCceEEEEEeeeeecc----CCccceeEeccchhhhccccccCC---CCCCCceEEEEEEEeecCCCCCCcEEEEEEc-C
Q 007094 249 SPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS---QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-A 320 (618)
Q Consensus 249 lP~iLiI~LkRF~~~~----~~K~~~~V~fP~~LdL~~~~~~~~---~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~ 320 (618)
+|+||.|+||||++++ ..|++++++||.++||.+|++.+. ++.++.|.|+||++|.| +.+.|||+|++|. .
T Consensus 378 lPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsG-Dl~~GHyYallKpe~ 456 (1089)
T COG5077 378 LPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSG-DLHEGHYYALLKPEK 456 (1089)
T ss_pred CchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEecc-ccCCceEEEEecccc
Confidence 9999999999999854 369999999999999999998764 34568999999999999 7999999999997 5
Q ss_pred CCceEEecCCceeecchhhhcc----------------------CCeEEEEEEEcCCCCCC
Q 007094 321 IGRWYCCNDSYVSVSTLQEVLS----------------------EKVYILFFIRANQRPVS 359 (618)
Q Consensus 321 ~~~W~~fNDs~Vt~v~~~ev~s----------------------~~aYmLfY~R~~~~~~~ 359 (618)
+|+||+|||++|++++..+|+. -.||||+|-|++...-.
T Consensus 457 dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ddL 517 (1089)
T COG5077 457 DGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDL 517 (1089)
T ss_pred CCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHHhh
Confidence 7999999999999999999883 26899999999875444
No 18
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-46 Score=406.12 Aligned_cols=320 Identities=27% Similarity=0.497 Sum_probs=275.4
Q ss_pred cccccCCccccccCCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHH
Q 007094 8 QMSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILE 87 (618)
Q Consensus 8 ~~~W~~~~~~~~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (618)
-+.|.-.++..+|+..|. |||+|-|+|||||+++|-|+++|-+|..+....+.....+.. .....+|+++
T Consensus 78 lyE~~YlppVgsRpp~gf-VGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s---------~~e~vl~~lQ 147 (944)
T KOG1866|consen 78 LYEWEYLPPVGSRPPEGF-VGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMS---------GDEKVLRHLQ 147 (944)
T ss_pred ccCcccCCCcCCCCCcce-eeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhc---------chHHHHHHHH
Confidence 356776666555666565 999999999999999999999999999887766542111111 1122899999
Q ss_pred HHHHHhhcCCCCccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCC
Q 007094 88 KRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGS 167 (618)
Q Consensus 88 ~~~~~~~~~~~~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (618)
.+|..+..+..+.+-|..|-+.++..+......+||||.|||..|+|.|++.+.+... .
T Consensus 148 ~iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~---------------------p 206 (944)
T KOG1866|consen 148 VIFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGH---------------------P 206 (944)
T ss_pred HHHHHHHHHhhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCC---------------------c
Confidence 9999999999999999999999998888888899999999999999999998865533 3
Q ss_pred CccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEe
Q 007094 168 SVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSIL 247 (618)
Q Consensus 168 s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~ 247 (618)
.++.+.|+|....+-.|..|.+.....|.|..|+|+|. ..+|+++|+.|++.|+++|.|.|+|++|+++....|++.|+
T Consensus 207 ~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik 285 (944)
T KOG1866|consen 207 QLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIK 285 (944)
T ss_pred HHHHHHhcCccchhhhhccCCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHh
Confidence 57889999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred eCCceEEEEEeeeeeccC----CccceeEeccchhhhccccccCC----------------CCCCCceEEEEEEEeecCC
Q 007094 248 QSPNILVIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKAS----------------QDPQPEYKLFGTIVHSGFS 307 (618)
Q Consensus 248 ~lP~iLiI~LkRF~~~~~----~K~~~~V~fP~~LdL~~~~~~~~----------------~~~~~~Y~L~aVI~H~G~s 307 (618)
+||++|+|||+||.|+.. .|-+..+.||..|||.+|+..+. .....+|+|+|||+|+| .
T Consensus 286 ~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG-q 364 (944)
T KOG1866|consen 286 KLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG-Q 364 (944)
T ss_pred hCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc-c
Confidence 999999999999999553 59999999999999999976431 12456899999999999 6
Q ss_pred CCCCcEEEEEEcC----CCceEEecCCceeecchhhhcc--------------------CCeEEEEEEEcCCCCCCC
Q 007094 308 PDSGHYYAYIKDA----IGRWYCCNDSYVSVSTLQEVLS--------------------EKVYILFFIRANQRPVSA 360 (618)
Q Consensus 308 ~~sGHY~ayvr~~----~~~W~~fNDs~Vt~v~~~ev~s--------------------~~aYmLfY~R~~~~~~~~ 360 (618)
+.+|||++||++. .++||+|||..|++.+..++-. =+||||||+|.+..|...
T Consensus 365 AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~ 441 (944)
T KOG1866|consen 365 ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDD 441 (944)
T ss_pred ccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCccc
Confidence 9999999999872 4799999999999997665432 179999999999887664
No 19
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-44 Score=377.12 Aligned_cols=285 Identities=22% Similarity=0.345 Sum_probs=220.6
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchh--------hcccCCCch-hhhhccCchHHHHHHHHHHhhcC
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLC--------KQLTGDSAL-DAERKRECPFCILEKRIVRSLSV 96 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 96 (618)
|+||.|+||||||||+||+|+++|+||++++.+...... ....+.... .......+++++|+.+|..+..+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999987532110 000000000 00011235788999999999988
Q ss_pred CCCccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccce
Q 007094 97 DLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (618)
Q Consensus 97 ~~~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g 176 (618)
....+.|..++..+.. .||||+||+..||+.|+.++....... .+ ..........++|+++|.|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~------~~--~~~~~~~~~~~~I~~lF~G 144 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAF------AG--PDTEDDKEQSDLIKRLFSG 144 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccc------cC--cccccccchhhhhhHhcee
Confidence 8889999999877652 899999999999999999875332100 00 0001112446899999999
Q ss_pred EEEEEEEeCCCC---CeeeeeeeeEEEEEeecc----------cCCHHHHHHhcccccccCCCCcccCCccCccceeEEE
Q 007094 177 ALQSQVKCLACG---AESNKVDEIMDISLDILN----------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQ 243 (618)
Q Consensus 177 ~l~~~i~C~~C~---~~s~~~E~f~~LsL~i~~----------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~ 243 (618)
++.+.++|..|+ ..+.+.|+|++|+++|.. ..+|.++|+.|+..|.
T Consensus 145 ~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~--------------------- 203 (343)
T cd02666 145 KTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS--------------------- 203 (343)
T ss_pred eEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh---------------------
Confidence 999999999997 678899999999999984 6899999999998776
Q ss_pred EEEeeCCceEEEEEeeeee--ccCCccceeEeccchhhhccccccCC---------------------------CCCCCc
Q 007094 244 MSILQSPNILVIQLKRFEG--IFGGKIDKAIAFEEVLVLSSFMCKAS---------------------------QDPQPE 294 (618)
Q Consensus 244 ~~i~~lP~iLiI~LkRF~~--~~~~K~~~~V~fP~~LdL~~~~~~~~---------------------------~~~~~~ 294 (618)
|.++|++|.|||+ +.+ ....+..++++||..++..+++.... +.....
T Consensus 204 --~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 280 (343)
T cd02666 204 --LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYG 280 (343)
T ss_pred --hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Confidence 8899999999999 333 22356778888887777766643311 125778
Q ss_pred eEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEecCCceeecchhhhcc------CCeEEEEEE
Q 007094 295 YKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS------EKVYILFFI 351 (618)
Q Consensus 295 Y~L~aVI~H~G~s~~sGHY~ayvr~~-~~~W~~fNDs~Vt~v~~~ev~s------~~aYmLfY~ 351 (618)
|+|+|||+|.| +.++|||++|+|+. .+.||+|||..|++++.++++. .+||||+|+
T Consensus 281 Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 281 YRLHAVFIHRG-EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eEEEEEEEeec-CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 99999999999 56999999999984 5899999999999999999885 589999995
No 20
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=7.8e-43 Score=353.81 Aligned_cols=256 Identities=36% Similarity=0.606 Sum_probs=203.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcC--CCCccCh
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV--DLTLDAP 103 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~i~p 103 (618)
|+||.|.||||||||+||+|+++|+||++|+........ ..........++++.+..++..++.. ....+.|
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~ 74 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKEN------NESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISP 74 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHH------HCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHC
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhh------ccccccccccchhhhhhhhhhhhhhhcccccceee
Confidence 699999999999999999999999999999976221111 00011223445888999999999887 5688999
Q ss_pred HHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEE
Q 007094 104 AKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVK 183 (618)
Q Consensus 104 ~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~ 183 (618)
..|..+|....+.|..+.||||+|||..||+.|++++........ .........+++.++|.+.+...++
T Consensus 75 ~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~f~~~~~~~~~ 144 (269)
T PF00443_consen 75 SDFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKS----------WKNTNSSEDSLISDLFGGQFESSIK 144 (269)
T ss_dssp HHHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHH----------HHHHHCCEESHHHHHH-EEEEEEEE
T ss_pred ccccccccccccccccccccchhhhhcccccccchhhcccccccc----------ccccccccccccccccccccccccc
Confidence 999999999998999999999999999999999998754221000 0001123467899999999999999
Q ss_pred eCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeec
Q 007094 184 CLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI 263 (618)
Q Consensus 184 C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~ 263 (618)
|..|+.. ...|.++|++|+|+|+||.+.
T Consensus 145 c~~c~~~----------------------------------------------------~~~~~~~P~~L~i~l~R~~~~ 172 (269)
T PF00443_consen 145 CSSCKNS----------------------------------------------------QSSISSLPPILIIQLKRFEFD 172 (269)
T ss_dssp ETTTTCE----------------------------------------------------EEEEEEBBSEEEEEEE-EEEE
T ss_pred ccccccc----------------------------------------------------ccccccccceeeeccccceec
Confidence 9999987 456999999999999999663
Q ss_pred c----CCccceeEecc-chhhhccccccCCCC--CCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEecCCceeec
Q 007094 264 F----GGKIDKAIAFE-EVLVLSSFMCKASQD--PQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVS 335 (618)
Q Consensus 264 ~----~~K~~~~V~fP-~~LdL~~~~~~~~~~--~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~-~~W~~fNDs~Vt~v 335 (618)
. ..|+...|.|| +.|+|.+++..+... ....|+|+|||+|.| +.++|||+||+|+.. ++|++|||++|+++
T Consensus 173 ~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~ 251 (269)
T PF00443_consen 173 QETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEV 251 (269)
T ss_dssp STSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred cccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEEC
Confidence 3 36999999999 799999998765422 467999999999999 899999999999854 46999999999999
Q ss_pred chhhhcc---CCeEEEEE
Q 007094 336 TLQEVLS---EKVYILFF 350 (618)
Q Consensus 336 ~~~ev~s---~~aYmLfY 350 (618)
++++|.. .+||||||
T Consensus 252 ~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 252 SWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp SHHHHCCGGSTCEEEEEE
T ss_pred CHHHHhhccCCceEEEeC
Confidence 9999988 89999999
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-44 Score=397.37 Aligned_cols=328 Identities=30% Similarity=0.453 Sum_probs=259.3
Q ss_pred CCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcC-CCC
Q 007094 21 KRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV-DLT 99 (618)
Q Consensus 21 ~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 99 (618)
......+||.|+|||||||++||||+.++.||..++...+..... .+.......+.......+...+.. ...
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~-------~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 368 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN-------LDLFFGAEELESACAKLLQKLWHGHGQF 368 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc-------cCCcccchhHHHHHHHhhhhhccCCCce
Confidence 334445999999999999999999999999997777655443221 001112223444555555555554 447
Q ss_pred ccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhh---hccCCCC-------CCCCC----CCCCcccC
Q 007094 100 LDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKK---LRRKGGG-------SSGGG----GGGETING 165 (618)
Q Consensus 100 ~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~---~~~~~~~-------~~~~~----~~~~~~~~ 165 (618)
.+.|..|+..+..+.+.|.+..|||+|||+.++++.||++++.... ..+...+ .+... .+......
T Consensus 369 s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~ 448 (653)
T KOG1868|consen 369 SVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEE 448 (653)
T ss_pred ecCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccc
Confidence 7999999999999999999989999999999999999999987543 1111101 00000 01111233
Q ss_pred CCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeecc------cCCHHHHHHhcccccccCCCCcccCCccCccce
Q 007094 166 GSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (618)
Q Consensus 166 ~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~ 239 (618)
..+.|.++|.|++.+.++|..|++.+.++++|.+++|+|+. ..+|++|+..|+..|.+++++.|.|++|+....
T Consensus 449 ~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~ 528 (653)
T KOG1868|consen 449 EDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKES 528 (653)
T ss_pred cchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccc
Confidence 44558999999999999999999999999999999999986 245999999999999999999999999999998
Q ss_pred eE--EEEEEeeCCceEEEEEeeeeec--cCCccceeEeccc-hhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEE
Q 007094 240 AR--KQMSILQSPNILVIQLKRFEGI--FGGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYY 314 (618)
Q Consensus 240 a~--k~~~i~~lP~iLiI~LkRF~~~--~~~K~~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ 314 (618)
.. |+..|.++|++|+|||+||..+ ...|....|+||. ..++.++..... +....|+|+|||+|.| +.++|||+
T Consensus 529 ~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~-~~~~~Y~L~aVv~H~G-tl~sGHYt 606 (653)
T KOG1868|consen 529 SKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKG-NNPKSYRLYAVVNHSG-TLNSGHYT 606 (653)
T ss_pred ccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccC-CCccceeeEEEEeccC-cccCCceE
Confidence 86 9999999999999999999985 5578888899995 455665443332 3455699999999999 89999999
Q ss_pred EEEEc-CCCceEEecCCceeecchhhhccCCeEEEEEEEcCCCC
Q 007094 315 AYIKD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP 357 (618)
Q Consensus 315 ayvr~-~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~~~ 357 (618)
||++. ..+.|+.|||+.|+.+....+....||||||.|....+
T Consensus 607 a~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 607 AYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred EEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 99987 46899999999999999999988999999999987654
No 22
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-43 Score=374.82 Aligned_cols=310 Identities=29% Similarity=0.429 Sum_probs=255.1
Q ss_pred ccccccccCCccccccCC----CCC-CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhcc
Q 007094 5 HELQMSWQPSLLSEKRKR----GGP-PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKR 79 (618)
Q Consensus 5 ~~~~~~W~~~~~~~~r~~----~g~-pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 79 (618)
.+++--|.+....+.+.. .|+ ++||.|+||+||||||+|+|+.+|.|....+.....-.+ .+..+.
T Consensus 281 l~~N~i~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~---------~~~~P~ 351 (763)
T KOG0944|consen 281 LDQNRIWEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNC---------YPKDPT 351 (763)
T ss_pred HHhhcccCceeeccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeec---------CCCCcc
Confidence 344455665544333332 233 399999999999999999999999999877765222212 133466
Q ss_pred CchHHHHHHHHHHhhcCCC----------CccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccC
Q 007094 80 ECPFCILEKRIVRSLSVDL----------TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRK 149 (618)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~----------~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~ 149 (618)
.++.|++.+++..|.+... ..|.|..|...+.+-.+.|+..+||||+|||.+||+.|++-..
T Consensus 352 ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~r-------- 423 (763)
T KOG0944|consen 352 NDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSR-------- 423 (763)
T ss_pred hhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccc--------
Confidence 7799999999998876543 3689999999999999999999999999999999999987421
Q ss_pred CCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeecc------cCCHHHHHHhccccccc
Q 007094 150 GGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVL 223 (618)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~l 223 (618)
.....+.++|...+..++.|..|..++++.+.-+.|+|+++. ...+.+||+.||.+.+.
T Consensus 424 ---------------s~~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~ 488 (763)
T KOG0944|consen 424 ---------------SSLPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVD 488 (763)
T ss_pred ---------------ccCCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcch
Confidence 112568899999999999999999999998888889999875 35999999999999444
Q ss_pred CCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeee--ccCCccceeEeccchhhhccccccCCC------------
Q 007094 224 DGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAIAFEEVLVLSSFMCKASQ------------ 289 (618)
Q Consensus 224 ~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~--~~~~K~~~~V~fP~~LdL~~~~~~~~~------------ 289 (618)
+ |.|..|+.+..+.|..+|.++|++|+||+.||.+ ....|+...+++|+.||++.|...+..
T Consensus 489 d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~ 564 (763)
T KOG0944|consen 489 D----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPE 564 (763)
T ss_pred h----hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcc
Confidence 4 9999999999999999999999999999999998 223799999999999999998876510
Q ss_pred --------------------------------------------------------------------------------
Q 007094 290 -------------------------------------------------------------------------------- 289 (618)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (618)
T Consensus 565 ~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~s 644 (763)
T KOG0944|consen 565 TSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVS 644 (763)
T ss_pred cCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeee
Confidence
Q ss_pred ---------------------------------------------------------CCCCceEEEEEEEeecCCCCCCc
Q 007094 290 ---------------------------------------------------------DPQPEYKLFGTIVHSGFSPDSGH 312 (618)
Q Consensus 290 ---------------------------------------------------------~~~~~Y~L~aVI~H~G~s~~sGH 312 (618)
+...+|.|+|+|+|.|+++.+||
T Consensus 645 mGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGH 724 (763)
T KOG0944|consen 645 MGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGH 724 (763)
T ss_pred ecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcc
Confidence 04558999999999999999999
Q ss_pred EEEEEEcCCCceEEecCCceeecchhhhccCCeEEEEEEEc
Q 007094 313 YYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 353 (618)
Q Consensus 313 Y~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~ 353 (618)
|+|++|. .|+|+.|||++|-. .++-....+||+||+|.
T Consensus 725 YV~hirK-egkWVlfNDeKv~~--S~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 725 YVCHIRK-EGKWVLFNDEKVAA--SQEPPKDLGYVYLYTRI 762 (763)
T ss_pred eEEEEee-cCcEEEEcchhhhh--ccCChhhcceEEEEEec
Confidence 9999999 58899999999972 33334678999999996
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-42 Score=344.71 Aligned_cols=197 Identities=22% Similarity=0.330 Sum_probs=164.3
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEE
Q 007094 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (618)
Q Consensus 121 ~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~L 200 (618)
.||||+||++.||+.|+..+....... .......++|.++|.|++.+++.| |+..+.+.|+|++|
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~-------------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L 85 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAI-------------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQY 85 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc-------------cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEE
Confidence 599999999999999999875321100 001134578999999999987777 77888999999999
Q ss_pred EEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc--CCccceeEeccchh
Q 007094 201 SLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEVL 278 (618)
Q Consensus 201 sL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~--~~K~~~~V~fP~~L 278 (618)
+|+|.+..+|++||+.++.+|.+++.+.++ ...+.++..|.++|+||+|||+||.++. ..|+++.|+||..|
T Consensus 86 ~l~i~~~~~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l 159 (228)
T cd02665 86 PLQVNGYGNLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII 159 (228)
T ss_pred EEEECCCCCHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc
Confidence 999999999999999999998888743322 2335566779999999999999999854 47999999999887
Q ss_pred hhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEecCCceeecchhhhcc--------CCeEEEE
Q 007094 279 VLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLS--------EKVYILF 349 (618)
Q Consensus 279 dL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~fNDs~Vt~v~~~ev~s--------~~aYmLf 349 (618)
....|+|+|||+|.| ++++|||++|+|+ ..+.||+|||+.|++++.++|.. ..|||||
T Consensus 160 ------------~~~~Y~L~aVi~H~G-~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLf 226 (228)
T cd02665 160 ------------QQVPYELHAVLVHEG-QANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLM 226 (228)
T ss_pred ------------CCceeEEEEEEEecC-CCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEE
Confidence 235899999999999 4899999999997 47899999999999999999873 4799999
Q ss_pred EE
Q 007094 350 FI 351 (618)
Q Consensus 350 Y~ 351 (618)
|.
T Consensus 227 Yv 228 (228)
T cd02665 227 YI 228 (228)
T ss_pred EC
Confidence 95
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-41 Score=344.21 Aligned_cols=215 Identities=23% Similarity=0.344 Sum_probs=170.8
Q ss_pred hhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeee
Q 007094 113 FAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESN 192 (618)
Q Consensus 113 l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~ 192 (618)
..+.|..++||||||||++||+.|++++.......... .. ........++|.|.+.+.++|..|++++.
T Consensus 24 ~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~---~~--------~~~~~~~~~~F~~~l~s~i~C~~C~~~s~ 92 (245)
T cd02673 24 INTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPS---NI--------EIKRLNPLEAFKYTIESSYVCIGCSFEEN 92 (245)
T ss_pred hhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCC---cc--------cccccCHhHheeeEEEeEEEecCCCCeee
Confidence 35568899999999999999999998775432111000 00 00112345889999999999999999999
Q ss_pred eeeeeEEEEEeecc--cCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeeccCCccce
Q 007094 193 KVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDK 270 (618)
Q Consensus 193 ~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~~~K~~~ 270 (618)
+.++|++|+|+++. ...+++++..+...+.++ |.|++|+.. .+.+..+|.++|+||+|||+||.+.. +...
T Consensus 93 ~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~ 165 (245)
T cd02673 93 VSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSD 165 (245)
T ss_pred eccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccc
Confidence 99999999999987 367888888888777765 899999875 78888899999999999999998643 2222
Q ss_pred eEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC--CCceEEecCCceeecchhhhc---cCCe
Q 007094 271 AIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA--IGRWYCCNDSYVSVSTLQEVL---SEKV 345 (618)
Q Consensus 271 ~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~--~~~W~~fNDs~Vt~v~~~ev~---s~~a 345 (618)
.+.+ ..+++.+|.. ....|+|+|||+|.|.+.++|||+||+|.. .++||+|||+.|+++++++|+ ++.|
T Consensus 166 ~~~~-~~~~~~~~~~-----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~a 239 (245)
T cd02673 166 YLKK-NEEIMKKYCG-----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSG 239 (245)
T ss_pred cccc-cccccccccC-----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCce
Confidence 2222 2345666654 356899999999999778999999999984 589999999999999999998 5799
Q ss_pred EEEEEE
Q 007094 346 YILFFI 351 (618)
Q Consensus 346 YmLfY~ 351 (618)
|||||+
T Consensus 240 YiLFY~ 245 (245)
T cd02673 240 YLIFYD 245 (245)
T ss_pred EEEEEC
Confidence 999995
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.6e-40 Score=328.57 Aligned_cols=215 Identities=38% Similarity=0.662 Sum_probs=182.5
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEE
Q 007094 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (618)
Q Consensus 121 ~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~L 200 (618)
.||||+|||..+|+.|+.++...... ........+.+.++|.+.+...+.|..|+..+.....+..+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~-------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l 87 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR-------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFL 87 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeE
Confidence 79999999999999999987643221 00012335789999999999999999999887776677777
Q ss_pred EEeecc----cCCHHHHHHhcccccccCCCCcccCCccC--ccceeEEEEEEeeCCceEEEEEeeeeecc---CCcccee
Q 007094 201 SLDILN----SCSLKEAMQKFFQPEVLDGNNKYKCDNCK--KLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKA 271 (618)
Q Consensus 201 sL~i~~----~~sLed~L~~~~~~E~l~g~nky~C~~C~--~~~~a~k~~~i~~lP~iLiI~LkRF~~~~---~~K~~~~ 271 (618)
.|+++. ..+|+++|+.++..|.+.+ +.|..|+ ....+.++..|.++|++|+|+|+||.+.. ..|+...
T Consensus 88 ~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~ 164 (255)
T cd02257 88 SLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTK 164 (255)
T ss_pred EeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCe
Confidence 777765 4899999999999999987 7888897 68888899999999999999999999743 5799999
Q ss_pred Eeccchhhhcccccc-----CCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEecCCceeecchhhh-----
Q 007094 272 IAFEEVLVLSSFMCK-----ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEV----- 340 (618)
Q Consensus 272 V~fP~~LdL~~~~~~-----~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~-~~W~~fNDs~Vt~v~~~ev----- 340 (618)
|.||..|++..++.. ........|+|+|||+|.|.+..+|||+||+|... ++||+|||..|++++++++
T Consensus 165 v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~ 244 (255)
T cd02257 165 VSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGS 244 (255)
T ss_pred EeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccC
Confidence 999999999988752 23346779999999999997669999999999965 9999999999999999999
Q ss_pred ccCCeEEEEEE
Q 007094 341 LSEKVYILFFI 351 (618)
Q Consensus 341 ~s~~aYmLfY~ 351 (618)
...+||||||+
T Consensus 245 ~~~~~yll~Y~ 255 (255)
T cd02257 245 LSSSAYILFYE 255 (255)
T ss_pred CCCceEEEEEC
Confidence 46899999995
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-40 Score=361.23 Aligned_cols=309 Identities=33% Similarity=0.540 Sum_probs=265.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCC-CCccChH
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD-LTLDAPA 104 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~p~ 104 (618)
..||.|+|+|||||++||.|.+.+..+...+...+.... . .....|+.|++.+++..+++.. ...+.|.
T Consensus 161 l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~-----~-----~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~ 230 (492)
T KOG1867|consen 161 LRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEP-----S-----SSGSSCLVCDLDRLFQALYSGHNRTPYSPF 230 (492)
T ss_pred ccccccccHHHHHHHHHHHhhccchhhccchhhhcccCC-----C-----CCCCcchhhhhhhhhhHhhcCCCCCCcChH
Confidence 379999999999999999999999999887776664111 1 1136788999999999999988 7899999
Q ss_pred HHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEe
Q 007094 105 KIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKC 184 (618)
Q Consensus 105 ~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C 184 (618)
.+++.+....+.+.+.+||||+||+..+++.++.+.....+.. ...+......++++.+|.|.+.+.++|
T Consensus 231 ~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~----------~~~~~~~~c~~iv~~~F~G~L~~~v~c 300 (492)
T KOG1867|consen 231 ELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL----------IASQSNKQCPCIVHTIFSGTLQSDVTC 300 (492)
T ss_pred HHHHHHHHhCcccccccccchHHHHHHhccccccccccccccc----------ccccCCcccccccceeecceeccceee
Confidence 9999999999999999999999999999999998751111100 001111244789999999999999999
Q ss_pred CCCCCeeeeeeeeEEEEEeeccc----------CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEE
Q 007094 185 LACGAESNKVDEIMDISLDILNS----------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILV 254 (618)
Q Consensus 185 ~~C~~~s~~~E~f~~LsL~i~~~----------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLi 254 (618)
..|+..+...++|++|+|+++.. .++.+++..+...|......++.|..|+.++.+.|+..|.++|.+|.
T Consensus 301 ~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~ 380 (492)
T KOG1867|consen 301 QTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLC 380 (492)
T ss_pred hhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceee
Confidence 99999998899999999999853 56999999999999888888899999999999999999999999999
Q ss_pred EEEeeeeec---cCCccceeEeccchhhhccccccCC----CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEe
Q 007094 255 IQLKRFEGI---FGGKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCC 327 (618)
Q Consensus 255 I~LkRF~~~---~~~K~~~~V~fP~~LdL~~~~~~~~----~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~f 327 (618)
+|++||++. ...|+++.|.||..|+|.+|+..+. +.....|+|.|||+|+|. .++|||+||.|. .+.||+|
T Consensus 381 ~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~-~~~~~~~ 458 (492)
T KOG1867|consen 381 LHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ-SGGWFKC 458 (492)
T ss_pred eeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEe-CCCcEEE
Confidence 999999982 1239999999999999999988521 235789999999999995 999999999999 8899999
Q ss_pred cCCceeecchhhhccCCeEEEEEEEcCCC
Q 007094 328 NDSYVSVSTLQEVLSEKVYILFFIRANQR 356 (618)
Q Consensus 328 NDs~Vt~v~~~ev~s~~aYmLfY~R~~~~ 356 (618)
||+.|+.++.++|++..||+|||.+....
T Consensus 459 dDs~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 459 DDSTVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred cCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence 99999999999999999999999987543
No 27
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=364.16 Aligned_cols=267 Identities=31% Similarity=0.549 Sum_probs=229.0
Q ss_pred CCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChH
Q 007094 25 PPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPA 104 (618)
Q Consensus 25 ~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~ 104 (618)
.+|||.|+..|||+|+.+|+|+..|+|++.++.... ..+.+.
T Consensus 86 ~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~--------------------------------------~~~et~ 127 (1203)
T KOG4598|consen 86 RYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN--------------------------------------DSLETK 127 (1203)
T ss_pred ceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc--------------------------------------ccccch
Confidence 359999999999999999999999999998873221 111111
Q ss_pred HHHHHHHhhhcccCC-----CCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEE
Q 007094 105 KIQSCLRIFAEHFKC-----GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQ 179 (618)
Q Consensus 105 ~~~~~L~~l~~~f~~-----g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~ 179 (618)
.+ ...|+| ++|||++|+-+.++++|+...... ....+|.+++.|++.
T Consensus 128 dl-------t~sfgw~s~ea~~qhdiqelcr~mfdalehk~k~t---------------------~~~~li~~ly~g~m~ 179 (1203)
T KOG4598|consen 128 DL-------TQSFGWTSNEAYDQHDVQELCRLMFDALEHKWKGT---------------------EHEKLIQDLYRGTME 179 (1203)
T ss_pred hh-------HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhhcCc---------------------hHHHHHHHHhcchHH
Confidence 12 233444 489999999999999999765432 224789999999999
Q ss_pred EEEEeCCCCCeeeeeeeeEEEEEeecc------cCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceE
Q 007094 180 SQVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNIL 253 (618)
Q Consensus 180 ~~i~C~~C~~~s~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iL 253 (618)
..+.|.+|+.++.+.+.|++|.|++.. ..+++++|..|..+|.++|.|+|-|++|+++..|.|.++|..+|-+|
T Consensus 180 d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~l 259 (1203)
T KOG4598|consen 180 DFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLL 259 (1203)
T ss_pred HHHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceee
Confidence 999999999999999999999999975 47999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeeeccC----CccceeEeccchhhhccccccCC-----------------------------------------
Q 007094 254 VIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKAS----------------------------------------- 288 (618)
Q Consensus 254 iI~LkRF~~~~~----~K~~~~V~fP~~LdL~~~~~~~~----------------------------------------- 288 (618)
+||||||.+++. .|+++++.||+.|+|..|+....
T Consensus 260 t~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~ 339 (1203)
T KOG4598|consen 260 TIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPN 339 (1203)
T ss_pred EEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcc
Confidence 999999998664 69999999999999999976432
Q ss_pred ------------------------CCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEecCCceeecchhhhc--
Q 007094 289 ------------------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVL-- 341 (618)
Q Consensus 289 ------------------------~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~fNDs~Vt~v~~~ev~-- 341 (618)
..++..|+|++|.+|.| ++.+|||+||+++ .+++||.|||.+|+-++.+++.
T Consensus 340 ~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~s 418 (1203)
T KOG4598|consen 340 RYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKS 418 (1203)
T ss_pred cccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecC-CCCCceeeeeecccCcCceEEecCccccccCHHHHHHh
Confidence 01567899999999999 7999999999999 5689999999999999988876
Q ss_pred -----------cCCeEEEEEEEcCCCCC
Q 007094 342 -----------SEKVYILFFIRANQRPV 358 (618)
Q Consensus 342 -----------s~~aYmLfY~R~~~~~~ 358 (618)
+.+||||+|+|.+....
T Consensus 419 fgg~~~~~~~s~tnaymlmyr~id~krn 446 (1203)
T KOG4598|consen 419 FGGHPSGWNQSNTNAYMLMYRRIDPKRN 446 (1203)
T ss_pred hCCCCCCccccCcchhhhhhhhcCcccc
Confidence 25899999999987543
No 28
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-38 Score=327.98 Aligned_cols=314 Identities=26% Similarity=0.425 Sum_probs=254.9
Q ss_pred cccccccccCCcccc---ccCC--CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhc
Q 007094 4 AHELQMSWQPSLLSE---KRKR--GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERK 78 (618)
Q Consensus 4 ~~~~~~~W~~~~~~~---~r~~--~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~ 78 (618)
+.+.+..|.+-.-.. ..+. -++.+||.|+||+||+||++|.|+....+...+....+...+ ....+
T Consensus 276 q~eqn~nw~F~~~~~~~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~---------~~~~P 346 (749)
T COG5207 276 QSEQNANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEIC---------YMKNP 346 (749)
T ss_pred HHhhhcCcchhccccCchhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceee---------eecCC
Confidence 345567787653211 1111 344699999999999999999999988887766554443322 12236
Q ss_pred cCchHHHHHHHHHHhhcCCC----CccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCC
Q 007094 79 RECPFCILEKRIVRSLSVDL----TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSS 154 (618)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~----~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~ 154 (618)
..|++|++.+++..+..... ..+.|..|..++..-.+.|+..+||||+|||.+||+.|..-...
T Consensus 347 ~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S------------ 414 (749)
T COG5207 347 LECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS------------ 414 (749)
T ss_pred chhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch------------
Confidence 77899999999998887652 56899999999999999999999999999999999999864321
Q ss_pred CCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeecc---cCCHHHHHHhcccccccCCCCcccC
Q 007094 155 GGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN---SCSLKEAMQKFFQPEVLDGNNKYKC 231 (618)
Q Consensus 155 ~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~---~~sLed~L~~~~~~E~l~g~nky~C 231 (618)
...+.|.++|...+..++.|..|+.+++..++...+.+++.+ ..++.++++.||.++.++ |.|
T Consensus 415 ----------~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~C 480 (749)
T COG5207 415 ----------YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSC 480 (749)
T ss_pred ----------hcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eeh
Confidence 223678899999999999999999999999999999998876 468999999999999999 999
Q ss_pred CccCccceeEEEEEEeeCCceEEEEEeeeee-cc-CCccceeEecc--chhhhccccccCCC------------------
Q 007094 232 DNCKKLVSARKQMSILQSPNILVIQLKRFEG-IF-GGKIDKAIAFE--EVLVLSSFMCKASQ------------------ 289 (618)
Q Consensus 232 ~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~-~~-~~K~~~~V~fP--~~LdL~~~~~~~~~------------------ 289 (618)
+.|+.+..|.+...|+++|++||++..||.. .+ ..|+..++.+. ..++++.||+....
T Consensus 481 enCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs 560 (749)
T COG5207 481 ENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQS 560 (749)
T ss_pred hhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHH
Confidence 9999999999999999999999999999986 22 24666666654 45778877765110
Q ss_pred -------------------------C------------------------------------------------------
Q 007094 290 -------------------------D------------------------------------------------------ 290 (618)
Q Consensus 290 -------------------------~------------------------------------------------------ 290 (618)
+
T Consensus 561 ~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rk 640 (749)
T COG5207 561 LIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRK 640 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHH
Confidence 0
Q ss_pred -------------------------------------------CCCceEEEEEEEeecCCCCCCcEEEEEEcC---CCce
Q 007094 291 -------------------------------------------PQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---IGRW 324 (618)
Q Consensus 291 -------------------------------------------~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~---~~~W 324 (618)
...-|.|.|||||.|.++++|||++|||.. .-+|
T Consensus 641 al~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kW 720 (749)
T COG5207 641 ALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKW 720 (749)
T ss_pred HHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeE
Confidence 122499999999999999999999999982 3489
Q ss_pred EEecCCceeecchhhhccCCeEEEEEEE
Q 007094 325 YCCNDSYVSVSTLQEVLSEKVYILFFIR 352 (618)
Q Consensus 325 ~~fNDs~Vt~v~~~ev~s~~aYmLfY~R 352 (618)
+.|||+.+-.++.-+++..+.|++||.|
T Consensus 721 vl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 721 VLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred EEEccchheehhhHHHHhhCCeEEEEec
Confidence 9999999999988889999999999998
No 29
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-38 Score=374.74 Aligned_cols=305 Identities=27% Similarity=0.463 Sum_probs=262.5
Q ss_pred ccCCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCC
Q 007094 19 KRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL 98 (618)
Q Consensus 19 ~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (618)
.++.+|.|+||.|+||||||||+||+|+.++.||+.++........ ..+......+|+++|..+..+..
T Consensus 163 ~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~-----------~~~~~~v~~~lq~lF~~LQ~s~~ 231 (1093)
T KOG1863|consen 163 SKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGH-----------EDPRRSIPLALQRLFYELQMSKR 231 (1093)
T ss_pred hhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCc-----------ccccchHHHHHHHHHHHHhhcCC
Confidence 4555899999999999999999999999999999999988742111 11223367789999999999988
Q ss_pred CccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEE
Q 007094 99 TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGAL 178 (618)
Q Consensus 99 ~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l 178 (618)
+.+++..+...+.... ....+|||++||++.|++.|+..+.... ....|.++|.|.+
T Consensus 232 k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~---------------------~~~~l~~lf~g~~ 288 (1093)
T KOG1863|consen 232 KYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK---------------------VENTLQDLFTGKM 288 (1093)
T ss_pred CCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh---------------------hhhhhhhhhcCCc
Confidence 8999999999987544 4557999999999999999998765332 1357899999999
Q ss_pred EEEEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEe
Q 007094 179 QSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLK 258 (618)
Q Consensus 179 ~~~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~Lk 258 (618)
.+.+.|..|...+.+.|.|+++.+++.+..++.++|..|+..|.++|+|+ .|..|...+.+.+...+..+|++|.|+|+
T Consensus 289 ~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~ 367 (1093)
T KOG1863|consen 289 KSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLM 367 (1093)
T ss_pred ceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred eeeecc----CCccceeEeccchhhhcccccc--CCCCCC-CceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEecCC
Q 007094 259 RFEGIF----GGKIDKAIAFEEVLVLSSFMCK--ASQDPQ-PEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDS 330 (618)
Q Consensus 259 RF~~~~----~~K~~~~V~fP~~LdL~~~~~~--~~~~~~-~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~fNDs 330 (618)
||.++. ..|+++.+.||..|+|.+|+.. ...... +.|.|+||++|.| ..++|||++|++. ..++|++|||.
T Consensus 368 Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfdd~ 446 (1093)
T KOG1863|consen 368 RFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFDDL 446 (1093)
T ss_pred heeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhcccc-cccCccceeeecchhhccceeccCc
Confidence 999943 3699999999999999999873 222233 5999999999977 7999999999997 47999999999
Q ss_pred ceeecchhhhcc----------------CCeEEEEEEEcCCCCCC
Q 007094 331 YVSVSTLQEVLS----------------EKVYILFFIRANQRPVS 359 (618)
Q Consensus 331 ~Vt~v~~~ev~s----------------~~aYmLfY~R~~~~~~~ 359 (618)
.|+.++..+++. ..||||+|.|.+.....
T Consensus 447 ~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~ 491 (1093)
T KOG1863|consen 447 VVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKI 491 (1093)
T ss_pred eeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhh
Confidence 999999877763 12899999998765433
No 30
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-38 Score=339.83 Aligned_cols=324 Identities=31% Similarity=0.496 Sum_probs=245.7
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcc------cCCCchhhhhccCchHHHHHHHHHHhhcCCCCc
Q 007094 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQL------TGDSALDAERKRECPFCILEKRIVRSLSVDLTL 100 (618)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (618)
+||.|+|||||+|||+|.|..+|.+|+.|.........-.+ ..............++.+|.. +..|......+
T Consensus 206 rGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~ksv 284 (877)
T KOG1873|consen 206 RGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETTKSV 284 (877)
T ss_pred cccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhccCCc
Confidence 79999999999999999999999999999887654311000 001111111222334444444 55566666689
Q ss_pred cChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhc---cCCCCCCC--CCC-------CCCcccCCCC
Q 007094 101 DAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLR---RKGGGSSG--GGG-------GGETINGGSS 168 (618)
Q Consensus 101 i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~---~~~~~~~~--~~~-------~~~~~~~~~s 168 (618)
+.|..|...+....++|.+++||||||+|+.|||.|..|-.+..+.. ..+..... .+. ..+......-
T Consensus 285 ~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~ 364 (877)
T KOG1873|consen 285 ITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSL 364 (877)
T ss_pred cCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccCCc
Confidence 99999999999999999999999999999999999987654333311 01111100 000 0111233345
Q ss_pred ccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeeccc-----------------------------------------
Q 007094 169 VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS----------------------------------------- 207 (618)
Q Consensus 169 ~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~----------------------------------------- 207 (618)
++...|.|.+.+++.|..|. ++...+.|.+.+++|-..
T Consensus 365 ~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~~ 443 (877)
T KOG1873|consen 365 PVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLDS 443 (877)
T ss_pred ccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccccc
Confidence 56689999999999999999 666778888888877210
Q ss_pred --------------------------------------------------------------------------------
Q 007094 208 -------------------------------------------------------------------------------- 207 (618)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (618)
T Consensus 444 ~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~~~ 523 (877)
T KOG1873|consen 444 LTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANMDE 523 (877)
T ss_pred ccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007094 208 -------------------------------------------------------------------------------- 207 (618)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (618)
T Consensus 524 ~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~~~ 603 (877)
T KOG1873|consen 524 FSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDKTV 603 (877)
T ss_pred cccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------CCHHHH
Q 007094 208 --------------------------------------------------------------------------CSLKEA 213 (618)
Q Consensus 208 --------------------------------------------------------------------------~sLed~ 213 (618)
.+++.|
T Consensus 604 g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq~C 683 (877)
T KOG1873|consen 604 GDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQRC 683 (877)
T ss_pred cccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHHHH
Confidence 169999
Q ss_pred HHhcccccccCCCCcccCCccCcc---------------------------ceeEEEEEEeeCCceEEEEEeeeeeccC-
Q 007094 214 MQKFFQPEVLDGNNKYKCDNCKKL---------------------------VSARKQMSILQSPNILVIQLKRFEGIFG- 265 (618)
Q Consensus 214 L~~~~~~E~l~g~nky~C~~C~~~---------------------------~~a~k~~~i~~lP~iLiI~LkRF~~~~~- 265 (618)
|.+|+..|++.|+|+|.|+.|.+. ..+.|++.|..+|+||+|||+||.....
T Consensus 684 L~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~~~ 763 (877)
T KOG1873|consen 684 LKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDIRG 763 (877)
T ss_pred HHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhhhc
Confidence 999999999999999999999651 1245778889999999999999987332
Q ss_pred --CccceeEeccchhhhccccccCC----CCCCCceEEEEEEEeecCCCCCCcEEEEEEc--------------------
Q 007094 266 --GKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-------------------- 319 (618)
Q Consensus 266 --~K~~~~V~fP~~LdL~~~~~~~~----~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-------------------- 319 (618)
.|.+..+.|++.+||.+|+.... ......|+|+|||.|.| ++..|||++|+|.
T Consensus 764 ~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsg-tm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~ 842 (877)
T KOG1873|consen 764 RLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSG-TMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAG 842 (877)
T ss_pred hhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccc-cccCCcchhhhhccchhhccCccccccchhccC
Confidence 58899999999999999986432 12455899999999999 7999999999983
Q ss_pred -CCCceEEecCCceeecchhhhccCCeEEEEEEEc
Q 007094 320 -AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 353 (618)
Q Consensus 320 -~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~ 353 (618)
+.++||+..|+.|.++++++|+..+||||||+|.
T Consensus 843 ~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 843 IPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred CCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2478999999999999999999999999999995
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.8e-37 Score=313.89 Aligned_cols=234 Identities=25% Similarity=0.420 Sum_probs=190.3
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 102 (618)
...++||.|.|.|||+||+||+|+++|+||+++..... ......|++|+|..+|
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~el~~lf------------ 65 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILV--------------ACPKESCLLCELGYLF------------ 65 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHHHhhcc--------------cCCcCccHHHHHHHHH------------
Confidence 34469999999999999999999999999998322111 1236679999999998
Q ss_pred hHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 007094 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i 182 (618)
..+ .+-|.++|++.+..+... .+
T Consensus 66 -s~~------------------iq~F~~fll~~i~~~~~~------------------------------~~-------- 88 (268)
T cd02672 66 -STL------------------IQNFTRFLLETISQDQLG------------------------------TP-------- 88 (268)
T ss_pred -HHH------------------HHHHHHHHHHHHHHHhcc------------------------------cC--------
Confidence 111 233778888888855210 00
Q ss_pred EeCCCCCeeeeeeeeEEEEEeecc-----cCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCc----eE
Q 007094 183 KCLACGAESNKVDEIMDISLDILN-----SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPN----IL 253 (618)
Q Consensus 183 ~C~~C~~~s~~~E~f~~LsL~i~~-----~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~----iL 253 (618)
..|+..+.+.++|..|+|+++. ..+|++||+.++..|... ++.|++|++.+.+.|+.+|.++|+ ||
T Consensus 89 --~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL 163 (268)
T cd02672 89 --FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVL 163 (268)
T ss_pred --CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceE
Confidence 5699999999999999999985 469999999999998654 599999999999999999999999 99
Q ss_pred EEEEeeeeecc---------CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC----
Q 007094 254 VIQLKRFEGIF---------GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---- 320 (618)
Q Consensus 254 iI~LkRF~~~~---------~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~---- 320 (618)
+|||+||.+.. ..|+...|.||..+++..+...+ .....+|+|+|||+|.|.+.++|||+||+|..
T Consensus 164 ~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~-~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~ 242 (268)
T cd02672 164 VINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRG-QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEES 242 (268)
T ss_pred EEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccC-CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCC
Confidence 99999998522 24677789999887766554433 24567899999999999666999999999984
Q ss_pred -CCceEEecCCceeecchhhhccCCeEEEEEE
Q 007094 321 -IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (618)
Q Consensus 321 -~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~ 351 (618)
.++||+|||..|++|+. .||||||+
T Consensus 243 ~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 243 THGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred CCCcEEEecCeEEEEcCc------hheeeecC
Confidence 57899999999999987 99999995
No 32
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-35 Score=342.60 Aligned_cols=321 Identities=31% Similarity=0.499 Sum_probs=263.7
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 102 (618)
.|. +||.|+|||||||+.+|+|.+.++++++++...+.... +..... .....+-..+..++..++......+.
T Consensus 244 ~g~-~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ei---n~~n~~---~~~~~~~~~~~~l~~~~~s~~~~~v~ 316 (842)
T KOG1870|consen 244 RGE-TGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREI---NESNPL---GSAGEVASSFADLIKQLWSGNKSAVA 316 (842)
T ss_pred ccc-cccccCCccccchhhhhhhccCcchhHHHHhHhhHhhh---cccCCC---cccceechhhhhHHHHhccCCccccC
Confidence 344 89999999999999999999999999999876554311 111111 11111222333445555555545899
Q ss_pred hHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC--------CCCCCcccCCCCcccccc
Q 007094 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGG--------GGGGETINGGSSVVKEIF 174 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~I~~lF 174 (618)
|..+...+..+.+.|.+..|||.+||+-+++|-+|+.+................ ..+........++|.++|
T Consensus 317 ~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~ 396 (842)
T KOG1870|consen 317 PTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLF 396 (842)
T ss_pred chhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeee
Confidence 999999999999999999999999999999999999998776642111111110 012223566778999999
Q ss_pred ceEEEEEEEeCCCCCeeeeeeeeEEEEEeeccc-----------------------------------------------
Q 007094 175 GGALQSQVKCLACGAESNKVDEIMDISLDILNS----------------------------------------------- 207 (618)
Q Consensus 175 ~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~----------------------------------------------- 207 (618)
.|.+.+...|..|+..+.++++|.+|+++++..
T Consensus 397 ~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 476 (842)
T KOG1870|consen 397 DGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSW 476 (842)
T ss_pred cceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999998721
Q ss_pred --------------------------------------------------------------------------------
Q 007094 208 -------------------------------------------------------------------------------- 207 (618)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (618)
T Consensus 477 ~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 477 ELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred hcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007094 208 -------------------------------------------------------------------------------- 207 (618)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (618)
T Consensus 557 ~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (842)
T KOG1870|consen 557 VLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALR 636 (842)
T ss_pred ccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccc
Confidence
Q ss_pred -----------------------------------------------------------CCHHHHHHhcccccccCCCCc
Q 007094 208 -----------------------------------------------------------CSLKEAMQKFFQPEVLDGNNK 228 (618)
Q Consensus 208 -----------------------------------------------------------~sLed~L~~~~~~E~l~g~nk 228 (618)
.+|++||..|+.+|.|..+++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~ 716 (842)
T KOG1870|consen 637 FFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDR 716 (842)
T ss_pred ccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCcccc
Confidence 169999999999999999999
Q ss_pred ccCCccCccceeEEEEEEeeCCceEEEEEeeeee--ccCCccceeEecc-chhhhccccccCCCCCCCceEEEEEEEeec
Q 007094 229 YKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSG 305 (618)
Q Consensus 229 y~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~--~~~~K~~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G 305 (618)
|.|++|+++..|.|++.++++|+||+||||||.+ ....|+.+.|+|| ..||+++|+..... ..|+|+||++|+|
T Consensus 717 w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~---~~Y~l~av~nHyG 793 (842)
T KOG1870|consen 717 WYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ---VLYDLYAVGNHYG 793 (842)
T ss_pred ccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc---ceeeeeeeecccC
Confidence 9999999999999999999999999999999998 3347999999999 57999999886652 8999999999999
Q ss_pred CCCCCCcEEEEEEc-CCCceEEecCCceeecchhhhccCCeEEEEEEEcC
Q 007094 306 FSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (618)
Q Consensus 306 ~s~~sGHY~ayvr~-~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~ 354 (618)
...+|||+||.|. .+++||.|||+.|.+++.+++..+.||+|||+|++
T Consensus 794 -~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 794 -QLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred -CcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 5999999999999 58999999999999999999999999999999974
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=4e-33 Score=291.22 Aligned_cols=280 Identities=24% Similarity=0.365 Sum_probs=237.6
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhh-cCCCCccChHH
Q 007094 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSL-SVDLTLDAPAK 105 (618)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~p~~ 105 (618)
+||.|.+++||+||+||+|+++|++|+.++... . | ....|+.|+|..+|.++. ...+..+.+..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~-c------------~~e~cL~cELgfLf~ml~~~~~g~~cq~sN 65 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E-C------------PKEFCLLCELGFLFDMLDSKAKGINCQASN 65 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C-C------------CccccHHHHHHHHHHHhhhhcCCCcChHHH
Confidence 599999999999999999999999999998765 1 2 267799999999999999 88888999999
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~ 185 (618)
|.++|+........+.|+|+++|+++|+++|+.++......... ..........+.|.++|+......++|.
T Consensus 66 flr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~f~~~~~~~~~c~ 137 (295)
T PF13423_consen 66 FLRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFH--------TSENSSSSPESSISQLFGTSFETTIRCT 137 (295)
T ss_pred HHHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCccccc--------ccccccCCCcchHHHHhCcceeeeeccc
Confidence 99999988766667789999999999999999998765431000 0000112345789999999999999999
Q ss_pred CCCCeeeeeeeeEEEEEeecc---cCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeee
Q 007094 186 ACGAESNKVDEIMDISLDILN---SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (618)
Q Consensus 186 ~C~~~s~~~E~f~~LsL~i~~---~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~ 262 (618)
.|+..+.+.+....+.+..+. ..++.++|+.++..|.... ..|++|++......+..|.++|+||.|.++|+..
T Consensus 138 ~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~ 214 (295)
T PF13423_consen 138 SCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSE 214 (295)
T ss_pred ccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCc
Confidence 999999998888888888876 5799999999999998886 8999999999999999999999999999999876
Q ss_pred c--cCCccceeEeccchhhhccccccCC------CCCCCceEEEEEEEeecCCCCCCcEEEEEEcC---CCceEEecCCc
Q 007094 263 I--FGGKIDKAIAFEEVLVLSSFMCKAS------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---IGRWYCCNDSY 331 (618)
Q Consensus 263 ~--~~~K~~~~V~fP~~LdL~~~~~~~~------~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~---~~~W~~fNDs~ 331 (618)
. ...|....+.+|..+++..++..+. .....+|+|.|+|||.|.+..+|||++|||.. +++||.|||..
T Consensus 215 ~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDfl 294 (295)
T PF13423_consen 215 EEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFL 294 (295)
T ss_pred ccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEe
Confidence 3 2357778899999999998876543 34677999999999999889999999999984 47999999976
Q ss_pred e
Q 007094 332 V 332 (618)
Q Consensus 332 V 332 (618)
|
T Consensus 295 V 295 (295)
T PF13423_consen 295 V 295 (295)
T ss_pred C
Confidence 5
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=2.8e-32 Score=274.53 Aligned_cols=176 Identities=22% Similarity=0.378 Sum_probs=136.0
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEE
Q 007094 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (618)
Q Consensus 121 ~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~L 200 (618)
+|||+.||+.+|++.++..+.. +.-++|.|-...+-. . +.-.|.++.|
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~--------------------------~~~~~~~~g~~~~~~---~---~~~~e~~l~l 69 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE--------------------------PKVDIIHGGKKDQDD---D---KLVNERLLQI 69 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh--------------------------HHHHHHhcCcccccc---c---cccccceEEe
Confidence 6899999999999998864432 223444442111100 0 2234667667
Q ss_pred EEeec---ccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc--CCccceeEecc
Q 007094 201 SLDIL---NSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE 275 (618)
Q Consensus 201 sL~i~---~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~--~~K~~~~V~fP 275 (618)
.++.. +..+|++||+.|+..|. |.++|++|+||||||.+.. ..|+++.|.||
T Consensus 70 ~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP 126 (241)
T cd02670 70 PVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP 126 (241)
T ss_pred ecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC
Confidence 76654 35799999999998876 8899999999999999844 46999999999
Q ss_pred chhhhccccccCC---------------------CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC------------C
Q 007094 276 EVLVLSSFMCKAS---------------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI------------G 322 (618)
Q Consensus 276 ~~LdL~~~~~~~~---------------------~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~------------~ 322 (618)
..|||.+|+.... .....+|+|+|||+|.|.+.++|||+||+|... +
T Consensus 127 ~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~ 206 (241)
T cd02670 127 DEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNA 206 (241)
T ss_pred CcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCC
Confidence 9999999986542 124568999999999998799999999999853 7
Q ss_pred ceEEecCCceeecchh------hhccCCeEEEEEE
Q 007094 323 RWYCCNDSYVSVSTLQ------EVLSEKVYILFFI 351 (618)
Q Consensus 323 ~W~~fNDs~Vt~v~~~------ev~s~~aYmLfY~ 351 (618)
.||+|||..|+.+... .+..+.||||||+
T Consensus 207 ~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 207 QWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred eEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 9999999988876432 4567999999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-32 Score=300.73 Aligned_cols=318 Identities=26% Similarity=0.400 Sum_probs=244.2
Q ss_pred CcccccCCCcchHH--HHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhc--CCCCcc
Q 007094 26 PLGLRNLGNSCYLN--SVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLS--VDLTLD 101 (618)
Q Consensus 26 pvGL~N~GNTCYlN--SvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~i 101 (618)
.-|..|.+++|+.| ++.|.++.+-.+++.......... .... .+ ...+..+...+..... .....+
T Consensus 232 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~i 301 (587)
T KOG1864|consen 232 VFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLK------RSYI---IK-EELLTCLLDLFSSISSRKKLVGRI 301 (587)
T ss_pred ccCccccCccccccchhhHHHHHhhhhhcccccchhhccc------chhh---hh-HHHHHHhhhhccchhhhccccccc
Confidence 36889999999999 999999999988864443322110 0000 00 0111111111111111 112568
Q ss_pred ChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCC---CCCCCCC--------CcccCCCCcc
Q 007094 102 APAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGS---SGGGGGG--------ETINGGSSVV 170 (618)
Q Consensus 102 ~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~s~I 170 (618)
.|..++..+.+....|..+.||||+||+.++++.+++.+............. .+..... ........++
T Consensus 302 ~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v 381 (587)
T KOG1864|consen 302 SPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWV 381 (587)
T ss_pred CcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHH
Confidence 9999999999999999999999999999999999998765544211111110 1111111 1123345789
Q ss_pred ccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeec--ccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEee
Q 007094 171 KEIFGGALQSQVKCLACGAESNKVDEIMDISLDIL--NSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQ 248 (618)
Q Consensus 171 ~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~--~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~ 248 (618)
+.+|.|.+..++.|..|...+.+.+.|.++++++. ...++..+|..|...|.+.|+++|.|++|...+.|.+.+.+.+
T Consensus 382 ~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~ 461 (587)
T KOG1864|consen 382 SKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKK 461 (587)
T ss_pred HHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccC
Confidence 99999999999999999999999999999999999 5899999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeeeeec----cCCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCce
Q 007094 249 SPNILVIQLKRFEGI----FGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRW 324 (618)
Q Consensus 249 lP~iLiI~LkRF~~~----~~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W 324 (618)
+|.+|+|+||||.+. ...|+...+.+|.++.+.....++. .+..+|.|+|||||.|.+++.|||+||+|...-.|
T Consensus 462 lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~-~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nW 540 (587)
T KOG1864|consen 462 LPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDN-NPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNW 540 (587)
T ss_pred Ccceeeeehhccccccccccccccccccccccceeecccccccc-CccceeeEEEEEEeccCCCCCcceEEEEeeCCCCc
Confidence 999999999999984 2358888899999988886655443 22579999999999999999999999999955559
Q ss_pred EEecCCceeecchhhhcc---CCeEEEEEEEcC
Q 007094 325 YCCNDSYVSVSTLQEVLS---EKVYILFFIRAN 354 (618)
Q Consensus 325 ~~fNDs~Vt~v~~~ev~s---~~aYmLfY~R~~ 354 (618)
++|||..|+.++.++|.. ..+|+++|...-
T Consensus 541 l~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 541 LLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred eecccccccccCcchhhhccCCCccceeeeEEe
Confidence 999999999999888874 567777777643
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-28 Score=252.57 Aligned_cols=319 Identities=25% Similarity=0.338 Sum_probs=222.4
Q ss_pred CCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHh----------
Q 007094 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRS---------- 93 (618)
Q Consensus 24 g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 93 (618)
..|+|+.|-||-|||||+||+|+.|+||.+.+........-.........+ .+..+.+.|..+
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~ld-------a~~~~~~df~n~~~~k~~r~N~ 98 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLD-------ASRPASSDFNNDSDAKLPRKNS 98 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHH-------HHHHHHhhccccchhhhhhhcc
Confidence 346999999999999999999999999999876554221110000000000 011111111100
Q ss_pred hc---------------CCCCccChHHHHHHHHhh--hcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCC----
Q 007094 94 LS---------------VDLTLDAPAKIQSCLRIF--AEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGG---- 152 (618)
Q Consensus 94 ~~---------------~~~~~i~p~~~~~~L~~l--~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~---- 152 (618)
+. .+...+.|..+...+... .+...+|.|+||.||+..++|.||+++.+..+.......
T Consensus 99 ~~~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~ 178 (420)
T KOG1871|consen 99 LRVPEHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTP 178 (420)
T ss_pred CCccccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccc
Confidence 00 001222333333333221 244567999999999999999999998776642111000
Q ss_pred ----CCCC-CCC-----------CC--------------cccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEE
Q 007094 153 ----SSGG-GGG-----------GE--------------TINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISL 202 (618)
Q Consensus 153 ----~~~~-~~~-----------~~--------------~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL 202 (618)
.++. ++. .. +..-..++|+++|+|++++...-. -.+++...+||..|+|
T Consensus 179 ~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~-~nkeS~tlqPF~tlql 257 (420)
T KOG1871|consen 179 RGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQP-SNKESATLQPFFTLQL 257 (420)
T ss_pred cccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecc-ccccccccCccceeee
Confidence 0000 000 00 022334789999999999877654 3556788999999999
Q ss_pred ee--cccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeec-cC--CccceeEeccch
Q 007094 203 DI--LNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI-FG--GKIDKAIAFEEV 277 (618)
Q Consensus 203 ~i--~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~-~~--~K~~~~V~fP~~ 277 (618)
++ .+..++++++..+...|.+.+ |.-. -+....+.+++.+.++|++|++|++||.|. .+ .|+.+.+++|-+
T Consensus 258 diq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~ 333 (420)
T KOG1871|consen 258 DIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWT 333 (420)
T ss_pred eeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccce
Confidence 99 567899999999999999986 5544 567788889999999999999999999983 22 588888999877
Q ss_pred hhhcccccc-----CCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEecCCceeecchhhhcc----CCeEE
Q 007094 278 LVLSSFMCK-----ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLS----EKVYI 347 (618)
Q Consensus 278 LdL~~~~~~-----~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~fNDs~Vt~v~~~ev~s----~~aYm 347 (618)
+.+..-+.. ........|+|.+||.|.|.++..|||..-+.+ ..+.|+++||..|..+..++|.. .+||+
T Consensus 334 l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yl 413 (420)
T KOG1871|consen 334 LKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYL 413 (420)
T ss_pred eeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchhe
Confidence 766643321 112345689999999999999999999999987 45789999999999999999985 68999
Q ss_pred EEEEEcC
Q 007094 348 LFFIRAN 354 (618)
Q Consensus 348 LfY~R~~ 354 (618)
|+|+|.+
T Consensus 414 lyY~~~d 420 (420)
T KOG1871|consen 414 LYYIEAD 420 (420)
T ss_pred eEeeecC
Confidence 9999864
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.9e-29 Score=260.30 Aligned_cols=299 Identities=21% Similarity=0.216 Sum_probs=222.4
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 102 (618)
-+.|+||.|+|||||||+.+|+|..+|+++..+......... .. .......++.++...|..+... ..+.
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~-----~~---t~~~a~~i~~~mR~~f~~~~~~--~~v~ 171 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGR-----GD---TWERRRRISIETRTCFRPLCEK--GAVA 171 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccC-----Cc---hhhhhhhHHHHHHHHHHhhhcc--CCcc
Confidence 577899999999999999999999999998876654422110 10 1111233455566666666655 7899
Q ss_pred hHHHHHHHHhhhcccCC------CCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccce
Q 007094 103 PAKIQSCLRIFAEHFKC------GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~------g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g 176 (618)
|..+.+.+....+.|.- ..||||.|++..++..++..+...... ......+..+|+.
T Consensus 172 pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~-----------------~~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 172 PINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEA-----------------PCLEAEAAAGFGA 234 (473)
T ss_pred hHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccc-----------------cchhHHHHHhhcc
Confidence 99999999888877754 689999999999999998764322110 0234568899999
Q ss_pred EEEEEEEeCCCCCeeee--eeeeEEEEEeecc-cCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceE
Q 007094 177 ALQSQVKCLACGAESNK--VDEIMDISLDILN-SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNIL 253 (618)
Q Consensus 177 ~l~~~i~C~~C~~~s~~--~E~f~~LsL~i~~-~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iL 253 (618)
.+..+..|.+-...... .|.|..|..-+.. ...+...|..-+..++-. .-+.-+......|...|.++|.+|
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~yl 309 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYL 309 (473)
T ss_pred ccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccc
Confidence 99999999987666443 7888888888865 344444554443322211 112222333445777899999999
Q ss_pred EEEEeeeeecc----CCccceeEeccchhhhccccccCCCC---------------------------------------
Q 007094 254 VIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQD--------------------------------------- 290 (618)
Q Consensus 254 iI~LkRF~~~~----~~K~~~~V~fP~~LdL~~~~~~~~~~--------------------------------------- 290 (618)
+|+..||.+.. ..|+.+.|.||..||..+++......
T Consensus 310 Tvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~ 389 (473)
T KOG1872|consen 310 TVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEG 389 (473)
T ss_pred eEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccc
Confidence 99999999832 36888899999999999888754210
Q ss_pred ---------C-CCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhcc-------CCeEEEEEEEc
Q 007094 291 ---------P-QPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS-------EKVYILFFIRA 353 (618)
Q Consensus 291 ---------~-~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s-------~~aYmLfY~R~ 353 (618)
. ...|+|.|||.|.|.+..+|||++|+|...+.|++|||..|+.+..+++.+ ..||+|+|.-+
T Consensus 390 ~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 390 MYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred hhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 1 457999999999999999999999999988899999999999999888874 68999999754
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.89 E-value=2.7e-23 Score=212.64 Aligned_cols=280 Identities=20% Similarity=0.301 Sum_probs=208.8
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCC--CccChH
Q 007094 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL--TLDAPA 104 (618)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~i~p~ 104 (618)
|||.|+.++-|+|++||+|.+.+++|+|++....... ....+...+..++..+|+... ..++|.
T Consensus 135 VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d--------------~~~~lv~rl~~l~rklw~~r~fk~hvSph 200 (442)
T KOG2026|consen 135 VGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFD--------------NLTELVQRLGELIRKLWNPRNFKGHVSPH 200 (442)
T ss_pred eccchhhhHHHHHHHHHHHhccchhhhhhcccccccc--------------hhHHHHHHHHHHHHHhcChhhhcccCCHH
Confidence 9999999999999999999999999999986532110 112244455566666666654 678999
Q ss_pred HHHHHHHhh-hcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEE
Q 007094 105 KIQSCLRIF-AEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVK 183 (618)
Q Consensus 105 ~~~~~L~~l-~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~ 183 (618)
+++++...+ .+.|..++|-|+.|||.|||+.||..+.... ...++|+..|.|.++...+
T Consensus 201 e~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k--------------------~~~SIi~~~fqG~~ri~k~ 260 (442)
T KOG2026|consen 201 EFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK--------------------KASSIIHKSFQGEVRIVKE 260 (442)
T ss_pred HHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC--------------------CchhHhhHhhcceEEeeee
Confidence 998887665 5679999999999999999999999875433 2358999999999976544
Q ss_pred eCC----CCCeeeeeeeeEEEEEeecccCC--------------HHHHHHhcccccccCCCCcccCCccCccceeEEEEE
Q 007094 184 CLA----CGAESNKVDEIMDISLDILNSCS--------------LKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMS 245 (618)
Q Consensus 184 C~~----C~~~s~~~E~f~~LsL~i~~~~s--------------Led~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~ 245 (618)
-.. -.......-+|+.|+|++|..+- |-+.|..|-..-.-+ +. ....+ ++..
T Consensus 261 ~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~ 330 (442)
T KOG2026|consen 261 KQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFR 330 (442)
T ss_pred ccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hhee
Confidence 332 11223456799999999987544 445555543321111 11 11122 7788
Q ss_pred EeeCCceEEEEEeeeee--ccCCccceeEecc-chhhhccccccC--CCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-
Q 007094 246 ILQSPNILVIQLKRFEG--IFGGKIDKAIAFE-EVLVLSSFMCKA--SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD- 319 (618)
Q Consensus 246 i~~lP~iLiI~LkRF~~--~~~~K~~~~V~fP-~~LdL~~~~~~~--~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~- 319 (618)
+.++|++|++|++||.- .+..|+.+.++|| ..+++.++.... .......|.|.|-++|. ..-|||...+++
T Consensus 331 l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~ 407 (442)
T KOG2026|consen 331 LTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDN 407 (442)
T ss_pred eecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeC
Confidence 99999999999999986 3457999999999 556655544322 22233689999999996 678999999998
Q ss_pred CCCceEEecCCceeecchhhhccCCeEEEEEEEc
Q 007094 320 AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 353 (618)
Q Consensus 320 ~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~ 353 (618)
..++||..+|-+|++...+-+.-..+||-+|++.
T Consensus 408 ~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 408 SSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred CCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 4689999999999999999998889999888874
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.77 E-value=1.6e-18 Score=192.64 Aligned_cols=300 Identities=20% Similarity=0.252 Sum_probs=210.8
Q ss_pred CCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccCh
Q 007094 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAP 103 (618)
Q Consensus 24 g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p 103 (618)
..+.||.-.+-+-|.|++||+|+++|+||.+++.+.. .+..|+.|+|..+|.++-.+.+..+..
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C----------------~~e~CL~CELGFLF~Ml~~S~G~~Cqa 560 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC----------------TKEFCLLCELGFLFTMLDSSTGDPCQA 560 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc----------------chhHHHHHHHHHHHHHHhhhcCCccch
Confidence 4458999999999999999999999999999987632 367899999999999999999899999
Q ss_pred HHHHHHHHhhhcccCCC---Cc-------------CcHHHHHHHHHHHHH--HHhhhhhhhccCCCCCCCCCCCCCcccC
Q 007094 104 AKIQSCLRIFAEHFKCG---RQ-------------EDAHEFLRYVIDACH--NTCLRLKKLRRKGGGSSGGGGGGETING 165 (618)
Q Consensus 104 ~~~~~~L~~l~~~f~~g---~Q-------------qDA~Efl~~LLd~L~--~el~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (618)
..|+.+++.....-..| .+ |||..|......... ..+.......... .......
T Consensus 561 ~NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~--------~~~~~vn 632 (1118)
T KOG1275|consen 561 NNFLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVD--------GESFKVN 632 (1118)
T ss_pred hHHHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhccc--------Cceeeec
Confidence 99999998775433222 11 233322222111110 0111111100000 1111234
Q ss_pred CCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeeccc---------CCHHHHHHhcccccccCCCCcccCCccCc
Q 007094 166 GSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS---------CSLKEAMQKFFQPEVLDGNNKYKCDNCKK 236 (618)
Q Consensus 166 ~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~---------~sLed~L~~~~~~E~l~g~nky~C~~C~~ 236 (618)
....+.+.|+..+.....|..|+..+.+......+.+..+.. ..+.+.|++... +..+-.-.|+.|++
T Consensus 633 ~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~---l~kn~~~~C~~C~k 709 (1118)
T KOG1275|consen 633 YAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLS---LFKNKQAWCETCTK 709 (1118)
T ss_pred chhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhh---cccccccccccccC
Confidence 557899999999999999999999987765666666666542 233334443222 11112268999999
Q ss_pred cceeEEEEEEeeCCceEEEEEeeeee------ccCCccceeEeccchhhhccccccC-----------------CCCCCC
Q 007094 237 LVSARKQMSILQSPNILVIQLKRFEG------IFGGKIDKAIAFEEVLVLSSFMCKA-----------------SQDPQP 293 (618)
Q Consensus 237 ~~~a~k~~~i~~lP~iLiI~LkRF~~------~~~~K~~~~V~fP~~LdL~~~~~~~-----------------~~~~~~ 293 (618)
......+..+..+|.+|.|...-+.. ....|....|-+|..+.+...-... .+..-.
T Consensus 710 ~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~ 789 (1118)
T KOG1275|consen 710 PEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAV 789 (1118)
T ss_pred CCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceE
Confidence 99999999999999999998876653 1123556678888877765431111 012336
Q ss_pred ceEEEEEEEeecCCCCCCcEEEEEEc---------CCCceEEecCCceeecchhhhcc-----CCeEEEEE
Q 007094 294 EYKLFGTIVHSGFSPDSGHYYAYIKD---------AIGRWYCCNDSYVSVSTLQEVLS-----EKVYILFF 350 (618)
Q Consensus 294 ~Y~L~aVI~H~G~s~~sGHY~ayvr~---------~~~~W~~fNDs~Vt~v~~~ev~s-----~~aYmLfY 350 (618)
+|+|.|+|+|.|.+.+.+|.+++|+. .+.+||.|||.-|.+++++|++. +.|.||+|
T Consensus 790 vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 790 VYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred EEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 89999999999988899999999984 13599999999999999999985 78999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.43 E-value=1.7e-06 Score=86.15 Aligned_cols=132 Identities=17% Similarity=0.373 Sum_probs=84.7
Q ss_pred CCccccccceEEEEEEEeCCCCCeeee-e-eeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEE
Q 007094 167 SSVVKEIFGGALQSQVKCLACGAESNK-V-DEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQM 244 (618)
Q Consensus 167 ~s~I~~lF~g~l~~~i~C~~C~~~s~~-~-E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~ 244 (618)
...+.++|...+.=...|..||+.... . -....++--+|. |- .+.-..--.|.+|+.+ ..++++
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pd----------wh---PLnA~h~~pCn~C~~k-sQ~rkM 185 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPD----------WH---PLNAVHFGPCNSCNSK-SQRRKM 185 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCC----------CC---cccccccCCCcccCCh-HHhHhh
Confidence 466889999999999999999987432 1 111111111111 11 1111112479999764 456677
Q ss_pred EEeeCCceEEEEEeeeeeccCCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCce
Q 007094 245 SILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRW 324 (618)
Q Consensus 245 ~i~~lP~iLiI~LkRF~~~~~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W 324 (618)
.+.++|+|+++|+. .. +|.. |+..|-.. -....|++.+||-+.- +--|+++|+++.+|.|
T Consensus 186 vlekv~~vfmLHFV---eG----------LP~n-dl~~ysF~---feg~~Y~Vt~VIQY~~---~~~HFvtWi~~~dGsW 245 (275)
T PF15499_consen 186 VLEKVPPVFMLHFV---EG----------LPHN-DLQHYSFH---FEGCLYQVTSVIQYQA---NLNHFVTWIRDSDGSW 245 (275)
T ss_pred hhhcCchhhhhhhh---cc----------CCcc-CCCcccee---ecCeeEEEEEEEEEec---cCceeEEEEEcCCCCe
Confidence 89999999999943 22 1211 22221110 1245899999999975 3689999999999999
Q ss_pred EEecCCce
Q 007094 325 YCCNDSYV 332 (618)
Q Consensus 325 ~~fNDs~V 332 (618)
..|||-+=
T Consensus 246 LecDDLkg 253 (275)
T PF15499_consen 246 LECDDLKG 253 (275)
T ss_pred EeeccCCC
Confidence 99999643
No 41
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0015 Score=74.19 Aligned_cols=112 Identities=25% Similarity=0.237 Sum_probs=57.6
Q ss_pred cccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHh--hcCCCCc--cChH
Q 007094 29 LRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRS--LSVDLTL--DAPA 104 (618)
Q Consensus 29 L~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~--i~p~ 104 (618)
|.|.||+||.|++||+|..+|+|+--+..+...........+..........+-.+.+....... ....... ..-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999976554322110000000111111111111111111111111 1111111 1222
Q ss_pred HHHHHHHh---hhcccCCCCcCcHHHHHHHHHHHHHHHh
Q 007094 105 KIQSCLRI---FAEHFKCGRQEDAHEFLRYVIDACHNTC 140 (618)
Q Consensus 105 ~~~~~L~~---l~~~f~~g~QqDA~Efl~~LLd~L~~el 140 (618)
.+...+.. ....|....|+||++++..++-.+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 22222221 2345777899999999999988887654
No 42
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=96.68 E-value=0.00048 Score=74.39 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=55.9
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHH----HHHHHHHhhcCCC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCI----LEKRIVRSLSVDL 98 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~ 98 (618)
.|...|++-.-|.||+||.|-+++.-......++--.+... ...-+-+ |...+.+.++...
T Consensus 365 ~gk~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~---------------d~~nYse~q~~LRseiVnplr~n~ 429 (724)
T KOG3556|consen 365 EGKIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPS---------------DSMNYSEMQHSLRSEIVNPLRRNQ 429 (724)
T ss_pred hcccccccCCcchhhccccccccccccccccccccCCCCcc---------------cccccHHHHHHHHHhhhchhhhcc
Confidence 46667999999999999999888865443333222111110 0001112 2223333333332
Q ss_pred --CccChHHHHHHHHhhhcccCCC-CcCcHHHHHHHHHHHHHH
Q 007094 99 --TLDAPAKIQSCLRIFAEHFKCG-RQEDAHEFLRYVIDACHN 138 (618)
Q Consensus 99 --~~i~p~~~~~~L~~l~~~f~~g-~QqDA~Efl~~LLd~L~~ 138 (618)
......+++..|..++...+.. +..|+.|||..++..+-.
T Consensus 430 fVr~~~~mklR~~ldql~~~sG~tceekdpEEFLn~l~t~i~r 472 (724)
T KOG3556|consen 430 FVRQNPAMKLRVELDQLNFRSGDTCEEKDPEEFLNGLKTLIAR 472 (724)
T ss_pred eeecCHHHHHHHHHHhhhccccCcccccCHHHHHHHHHHHhcc
Confidence 2333445666666654443322 567999999988887654
No 43
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.00049 Score=78.52 Aligned_cols=218 Identities=15% Similarity=0.186 Sum_probs=129.7
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCc-ccCCCCccccccceEEEEEEEeCCCCCeeeee-eeeE
Q 007094 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGET-INGGSSVVKEIFGGALQSQVKCLACGAESNKV-DEIM 198 (618)
Q Consensus 121 ~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~-E~f~ 198 (618)
...++.++|..++..|+............ .......+..| .....++++++|+.....+..|..|....+-. ..-+
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v--~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~ 625 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADV--VVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSY 625 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHH--HHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhh
Confidence 45588889999999888765432110000 00000111112 12334788899999999999999998875432 2222
Q ss_pred EEEEeecc---------cCCHHHHHHhcccccccCCCCcccCC----ccCccceeEEEEEEeeCCceEEEEEeeeeeccC
Q 007094 199 DISLDILN---------SCSLKEAMQKFFQPEVLDGNNKYKCD----NCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (618)
Q Consensus 199 ~LsL~i~~---------~~sLed~L~~~~~~E~l~g~nky~C~----~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~~ 265 (618)
.+.+.... ..++++.|.. ...+ .+..|+ +||+..-... .|.++|+|++|.+.+-.--..
T Consensus 626 ~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~-----~~m~cD~~~gGCgk~n~v~h--~is~~P~vftIvlewEk~ETe 697 (806)
T KOG1887|consen 626 GIVIAADSLRQLKCAFQNITFEDILKN-IRMN-----DKMLCDKETGGCGKANLVHH--ILSPCPPVFTIVLEWEKSETE 697 (806)
T ss_pred hhhccchhhhhHHHHhhhhhHHHHHHH-hhhh-----hhhcccccCCCCcchhhhhh--hcCCCCCeeEeeeehhcccch
Confidence 22222222 1233333333 1111 123454 4776544433 378899999997665321110
Q ss_pred -CccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceE--EecCCceeec-chhhhc
Q 007094 266 -GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWY--CCNDSYVSVS-TLQEVL 341 (618)
Q Consensus 266 -~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~--~fNDs~Vt~v-~~~ev~ 341 (618)
.--.+...+..++|++..+. ...++...|+|+++|..+.. .++|.|+.+. .++|+ ..+|..+..+ +|.+|+
T Consensus 698 ~eI~~T~~aL~teidis~~y~-~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 698 KEISETTKALATEIDISRLYR-EGLEPNTKYRLVSMVGNHEE---GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred HHHHHHHHHHHhhhhHHHHhh-hccCcCceeEEEEEeeeccc---cceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 11122344567788887665 33467889999999988741 5999999999 67777 9999988887 577776
Q ss_pred c------CCeEEEEEEEc
Q 007094 342 S------EKVYILFFIRA 353 (618)
Q Consensus 342 s------~~aYmLfY~R~ 353 (618)
+ -.+-+|||++.
T Consensus 773 r~c~e~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 773 RFCGERKVRPEILFYEAQ 790 (806)
T ss_pred HHHhcccccHHHHHHHHH
Confidence 4 24677777763
No 44
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=95.16 E-value=0.24 Score=52.36 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=38.5
Q ss_pred cccccCCCcchHHHHHHHHhcChH-HHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHH
Q 007094 27 LGLRNLGNSCYLNSVLQCLTYTPP-LANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (618)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~-Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~ 105 (618)
+=|+=.-|+||+||++=+|-++.. |+... +.++.. .+ ..-+|..
T Consensus 103 ~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~~---------------------------l~~aw~---~f-----~~G~~~~ 147 (320)
T PF08715_consen 103 RVLKQSDNNCWVNAACLQLQALKIKFKSPG---------------------------LDEAWN---EF-----KAGDPAP 147 (320)
T ss_dssp EEE---TTTHHHHHHHHHHTTST--BSSHH---------------------------HHHHHH---HH-----HTT--HH
T ss_pred EEEEecCCCcHHHHHHHHHHhcCCccCCHH---------------------------HHHHHH---HH-----hCCChHH
Confidence 556666799999999977755432 22110 111111 11 1235666
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHH
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHN 138 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~ 138 (618)
|...+.. ......|+..||+++|..|++.+..
T Consensus 148 fVa~~Ya-~~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 148 FVAWCYA-STNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHHHHH-HTT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHHHHH-HcCCCCCCCcCHHHHHHHHHHhccc
Confidence 6666554 3345568899999999999886653
No 45
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=89.30 E-value=0.16 Score=48.64 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=35.3
Q ss_pred EEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhccCCeEEEEEEEcCCCCCC
Q 007094 298 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVS 359 (618)
Q Consensus 298 ~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~~~~~ 359 (618)
.+-|.-.|. ||.+.+.+. .+.||.+||+.+.+.++... -+|.|..-+..+..
T Consensus 130 ~agi~~~g~----~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~Epl~ 181 (193)
T PF05408_consen 130 HAGIFLKGQ----EHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEPLP 181 (193)
T ss_dssp EEEEEEEST----TEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESSSS-TT
T ss_pred hhHheecCC----cceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccCcccCC
Confidence 344455554 999999998 78999999999998754332 24778887776654
No 46
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=77.50 E-value=8.3 Score=37.29 Aligned_cols=22 Identities=41% Similarity=0.788 Sum_probs=15.8
Q ss_pred cccccCCCcchHHHHHHHHhcC
Q 007094 27 LGLRNLGNSCYLNSVLQCLTYT 48 (618)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~i 48 (618)
.|+.|.+|+||+||++|++...
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp E----SSSTHHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHHc
Confidence 5999999999999999998643
No 47
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=76.62 E-value=3.1 Score=35.36 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhh
Q 007094 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKR 602 (618)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (618)
++.|++.-..-|..|||.|+|...-|..=|
T Consensus 16 ~~~L~~~L~~rL~e~GW~d~vr~~~re~i~ 45 (86)
T PF10163_consen 16 YERLKELLRQRLIECGWRDEVRQLCREIIR 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 444555556678999999999988776433
No 48
>PF14353 CpXC: CpXC protein
Probab=60.99 E-value=12 Score=34.06 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=26.9
Q ss_pred EEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccc
Q 007094 181 QVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLV 238 (618)
Q Consensus 181 ~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~ 238 (618)
+++|..|++..... ..-.++....+.+.+.|- ..+... +.|+.||...
T Consensus 1 ~itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il---~g~l~~----~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFE---VWTSINADEDPELKEKIL---DGSLFS----FTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHH---cCCcCE----EECCCCCCce
Confidence 36899999875432 112333333334444443 333333 9999999754
No 49
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=53.23 E-value=12 Score=29.82 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=28.0
Q ss_pred CcccCCccCccceeEEEEEEe--eCCceEEEEEeeeee
Q 007094 227 NKYKCDNCKKLVSARKQMSIL--QSPNILVIQLKRFEG 262 (618)
Q Consensus 227 nky~C~~C~~~~~a~k~~~i~--~lP~iLiI~LkRF~~ 262 (618)
+++.|++|+...-.++..... .+-+++=||.++|-.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 457799999887777776554 577899999999864
No 50
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=45.00 E-value=27 Score=29.16 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=14.8
Q ss_pred hhhhhhccchHHHHHHHHh
Q 007094 581 SSVLQSCGWSEKVLSYMRS 599 (618)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~ 599 (618)
-+-|--|||-|+|-...|.
T Consensus 25 ~trLvECGW~d~ik~mcrn 43 (92)
T KOG4479|consen 25 HTRLVECGWHDDIKEMCRN 43 (92)
T ss_pred HHHHHHcccHHHHHHHHHH
Confidence 4668889999999776554
No 51
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=40.62 E-value=36 Score=38.81 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=41.7
Q ss_pred ceEEEEEeeeee----------ccC-CccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCC----------
Q 007094 251 NILVIQLKRFEG----------IFG-GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPD---------- 309 (618)
Q Consensus 251 ~iLiI~LkRF~~----------~~~-~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~---------- 309 (618)
.+|++.+.|-.. .+. .-++.++++..++.+. ...|+|.+.|||.-...-
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in----------gimyrL~SAVCYK~~d~~~d~C~~~dif 548 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN----------GIMYRLKSAVCYKIGDQFFDGCNGNDIF 548 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec----------ceeeeeehhheeeccccccCCCCCCcce
Confidence 689999988532 111 2334556666666555 458999999999642211
Q ss_pred -CCcEEEEEEcCCCceEEecCCce
Q 007094 310 -SGHYYAYIKDAIGRWYCCNDSYV 332 (618)
Q Consensus 310 -sGHY~ayvr~~~~~W~~fNDs~V 332 (618)
-|||+ .++.+. .|+.||-..|
T Consensus 549 lkG~yt-IlfTe~-Gpw~YDP~s~ 570 (666)
T PF03292_consen 549 LKGYYT-ILFTEM-GPWMYDPLSI 570 (666)
T ss_pred eceeEE-EEEecC-CceeeCchhh
Confidence 26665 455534 4666665444
No 52
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=31.93 E-value=56 Score=31.06 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=25.7
Q ss_pred EEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceee
Q 007094 297 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSV 334 (618)
Q Consensus 297 L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~ 334 (618)
..|+||+.+ .|++|..|- ++.||-+|-..-.+
T Consensus 99 ~~gfI~N~~-----~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNLS-----RHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEECT-----TEEEEEEEE-TTEEEEECTTTSS-
T ss_pred ceEEEeccC-----cceEEEEee-CCeeEeccCCCCCC
Confidence 568999966 899998888 89999999755443
No 53
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=28.28 E-value=61 Score=19.10 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=10.9
Q ss_pred EEEcCCCceEEecCC
Q 007094 316 YIKDAIGRWYCCNDS 330 (618)
Q Consensus 316 yvr~~~~~W~~fNDs 330 (618)
+++. ++.||.|++.
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 5666 6899999875
No 54
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=28.10 E-value=1.5e+02 Score=25.84 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=38.1
Q ss_pred ceEEEEEEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeC
Q 007094 175 GGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (618)
Q Consensus 175 ~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~l 249 (618)
.|...++..|..|.+..........=..+ ....+++.|..--.-+..+. ..-.|++|+.......++.+.++
T Consensus 15 ~g~~~~rf~C~tCpY~~~I~~ei~~r~~~--~~Kevd~vlgg~~a~~nv~~-t~~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 15 SGESCNRFSCRTCPYVFPISREISSRKYP--KLKEVDDVLGGDEAWENVDQ-TEATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred cCCeEeeEEcCCCCceeeEeeeeeccccC--chhhhhhhcCCcccccchhh-ccCcCCCCCCCceEEEEeeeccC
Confidence 34457888999999986533222211111 12345555544211122221 12589999987666666555543
No 55
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.45 E-value=2.6e+02 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=22.0
Q ss_pred CceEEEEEEEeecCCCCCCcEEEEEEc
Q 007094 293 PEYKLFGTIVHSGFSPDSGHYYAYIKD 319 (618)
Q Consensus 293 ~~Y~L~aVI~H~G~s~~sGHY~ayvr~ 319 (618)
..-+.+|+|+-......+-||+|||.+
T Consensus 81 ~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 81 KHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred CCcceEEEEeccCCCCCcceEEEEEEE
Confidence 356789999998865566899999987
No 56
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=20.72 E-value=1.3e+02 Score=22.78 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhh----hhhhccchHH--HHHHHHhhh
Q 007094 568 KLQELEEVLKKEASS----VLQSCGWSEK--VLSYMRSRK 601 (618)
Q Consensus 568 ~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~ 601 (618)
++++|++.|...... ....-+|.|+ ++-|+|+||
T Consensus 3 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~llRFLRARk 42 (55)
T PF03765_consen 3 KLKQLREHLSELDEKAPGLWDDEKEDHDDNFLLRFLRARK 42 (55)
T ss_dssp HHHHHHHHHHH--GGGTHHHTTHTSS-SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccchhcccccccCCCCHHHHHHHHHHcc
Confidence 577888888875433 2233344444 567999976
No 57
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=20.49 E-value=79 Score=25.41 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=18.4
Q ss_pred ccCCccCccceeEEEEEEe--eCCceEEEEEeeee
Q 007094 229 YKCDNCKKLVSARKQMSIL--QSPNILVIQLKRFE 261 (618)
Q Consensus 229 y~C~~C~~~~~a~k~~~i~--~lP~iLiI~LkRF~ 261 (618)
|.|++|+...-..++.... .+-.++-|+.++|.
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~ 35 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFT 35 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEE
Confidence 6899999755444443321 23344555555554
Done!