Query 007094
Match_columns 618
No_of_seqs 282 out of 1457
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 7.1E-61 2.4E-65 512.7 31.0 325 26-359 8-364 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 9.2E-60 3.2E-64 498.1 29.1 321 24-355 7-344 (348)
3 3i3t_A Ubiquitin carboxyl-term 100.0 1.7E-59 6E-64 497.4 25.5 319 26-357 3-354 (355)
4 2gfo_A Ubiquitin carboxyl-term 100.0 5E-59 1.7E-63 504.0 28.7 321 25-354 61-396 (396)
5 1nb8_A Ubiquitin carboxyl-term 100.0 1.4E-57 4.8E-62 485.4 29.5 292 26-356 6-317 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 5.6E-58 1.9E-62 495.7 25.1 321 21-357 9-397 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 6.2E-56 2.1E-60 490.5 29.3 310 26-354 141-474 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 5E-56 1.7E-60 482.9 27.4 296 23-354 21-414 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 4.7E-55 1.6E-59 489.1 26.9 294 23-356 173-486 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 3.5E-52 1.2E-56 487.1 27.8 292 25-354 343-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.9 4.1E-28 1.4E-32 253.0 7.6 227 23-329 6-308 (374)
12 3mp2_A Non-structural protein 97.1 0.007 2.4E-07 58.4 13.7 34 299-336 162-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 95.8 0.047 1.6E-06 55.9 11.1 37 298-337 260-296 (315)
14 3mhs_B Protein SUS1; multi-pro 81.7 1.1 3.7E-05 37.8 3.6 30 573-602 22-51 (96)
15 4dhx_B Enhancer of yellow 2 tr 77.6 1.7 5.7E-05 37.0 3.5 28 573-600 26-53 (101)
16 1qmy_A Protease, leader protea 72.7 1.6 5.6E-05 38.9 2.2 52 297-358 109-160 (167)
17 1zso_A Hypothetical protein; s 39.9 1E+02 0.0035 28.2 8.3 87 229-339 71-158 (164)
18 3c0t_B Mediator of RNA polymer 35.5 15 0.0005 23.4 1.2 17 591-607 11-27 (33)
19 3e1k_B Lactose regulatory prot 32.8 17 0.00058 21.4 1.1 8 590-597 10-17 (22)
20 1qmy_A Protease, leader protea 31.6 1E+02 0.0035 27.5 6.4 23 26-48 13-35 (167)
21 3a43_A HYPD, hydrogenase nicke 27.9 79 0.0027 28.0 5.3 50 177-238 66-117 (139)
22 2oxg_Z SOXZ protein; immunoglo 27.1 1.1E+02 0.0038 25.8 5.9 56 294-355 19-83 (108)
23 1v8h_A Sulfur oxidation protei 25.7 1.6E+02 0.0055 24.7 6.7 58 292-355 16-82 (107)
24 3bts_E Regulatory protein GAL4 25.0 29 0.00098 21.3 1.2 9 590-598 8-16 (26)
25 3o65_A Putative ataxin-3-like 21.2 68 0.0023 30.2 3.7 51 297-353 110-168 (191)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.1e-61 Score=512.69 Aligned_cols=325 Identities=29% Similarity=0.466 Sum_probs=269.0
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHH
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~ 105 (618)
++||.|+||||||||+||+|+++|+||++|+...+.... ... .+.....++.+++..++..++......+.|..
T Consensus 8 ~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~ 81 (367)
T 2y6e_A 8 LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEI---NRD---NPLGMKGEIAEAYAELIKQMWSGRDAHVAPRM 81 (367)
T ss_dssp CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGC---CSS---CTTSCTTHHHHHHHHHHHHHTSSSCSEECCHH
T ss_pred CcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhc---ccc---CCCCcchHHHHHHHHHHHHHHcCCCCCcCHHH
Confidence 499999999999999999999999999999976543221 001 11122345778888899999888778999999
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCC---------cccCCCCccccccce
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGE---------TINGGSSVVKEIFGG 176 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~I~~lF~g 176 (618)
|+.++....+.|..++||||+|||.+||+.|++++....+........ ..+..+. ......++|.++|+|
T Consensus 82 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~-~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G 160 (367)
T 2y6e_A 82 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKD-ANGRPDAVVAKEAWENHRLRNDSVIVDTFHG 160 (367)
T ss_dssp HHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCC-CCSCCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccccc-ccCCchhHHHHHHHHHHHHhcCCccccccCc
Confidence 999999999999999999999999999999999976543311110000 0000000 011245789999999
Q ss_pred EEEEEEEeCCCCCeeeeeeeeEEEEEeecc-------------------cCCHHHHHHhcccccccCCCCcccCCccCcc
Q 007094 177 ALQSQVKCLACGAESNKVDEIMDISLDILN-------------------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKL 237 (618)
Q Consensus 177 ~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~-------------------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~ 237 (618)
.+.++++|..|++.+.+.|+|++|+|+|+. ..+|++||+.|+.+|.++++|+|.|++|+..
T Consensus 161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~ 240 (367)
T 2y6e_A 161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH 240 (367)
T ss_dssp EEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence 999999999999999999999999999975 2589999999999999999999999999999
Q ss_pred ceeEEEEEEeeCCceEEEEEeeeeecc--CCccceeEeccc-hhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEE
Q 007094 238 VSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYY 314 (618)
Q Consensus 238 ~~a~k~~~i~~lP~iLiI~LkRF~~~~--~~K~~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ 314 (618)
+.+.|+..|.++|+||+|||+||.++. ..|+++.|.||. .|||.+|+.... .....|+|+|||+|.| +.++|||+
T Consensus 241 ~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G-~~~~GHY~ 318 (367)
T 2y6e_A 241 QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS-ARPYVYDLIAVSNHYG-AMGVGHYT 318 (367)
T ss_dssp ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS-SCCCEEEEEEEEEEEC-SSSSCEEE
T ss_pred ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC-CCCceEEEEEEeecCC-CCCCCeee
Confidence 999999999999999999999999843 369999999996 799999987543 3467999999999999 58999999
Q ss_pred EEEEcC-CCceEEecCCceeecchhhhccCCeEEEEEEEcCCCCCC
Q 007094 315 AYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVS 359 (618)
Q Consensus 315 ayvr~~-~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~~~~~ 359 (618)
||+|+. +++||+|||+.|+++++++|++..||||||+|.+..+..
T Consensus 319 a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~ 364 (367)
T 2y6e_A 319 AYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYK 364 (367)
T ss_dssp EEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC----
T ss_pred EEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCCC
Confidence 999995 789999999999999999999999999999999876543
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=9.2e-60 Score=498.15 Aligned_cols=321 Identities=30% Similarity=0.487 Sum_probs=269.0
Q ss_pred CCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhh-cCCCCccC
Q 007094 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSL-SVDLTLDA 102 (618)
Q Consensus 24 g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~ 102 (618)
..++||.|+||||||||+||+|+++|+||++++...+.... .. ......++.+++..++..++ ......+.
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~-----~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 78 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL-----HH---GSNAHTALVEEFAKLIQTIWTSSPNDVVS 78 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTS-----CS---SCCTTHHHHHHHHHHHHHHTTCCTTCEEC
T ss_pred CCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhh-----cc---CCCcccHHHHHHHHHHHHHHcCCCCCccC
Confidence 34599999999999999999999999999999875443221 10 11234467888889898888 45568899
Q ss_pred hHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCC--------CCCcccCCCCcccccc
Q 007094 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGG--------GGETINGGSSVVKEIF 174 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~I~~lF 174 (618)
|..|..++....+.|..++||||+|||.+||+.|++++.................. +........++|.++|
T Consensus 79 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F 158 (348)
T 3nhe_A 79 PSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLF 158 (348)
T ss_dssp CHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCcccccc
Confidence 99999999999999999999999999999999999998654321111100000000 0001234567899999
Q ss_pred ceEEEEEEEeCCCCCeeeeeeeeEEEEEeeccc----CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCC
Q 007094 175 GGALQSQVKCLACGAESNKVDEIMDISLDILNS----CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSP 250 (618)
Q Consensus 175 ~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~----~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP 250 (618)
+|.+.+.++|..|+..+.+.++|++|+|+++.. .+|+++|+.|+.+|.++++++|.|++|+....+.|+..|.++|
T Consensus 159 ~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP 238 (348)
T 3nhe_A 159 VGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFP 238 (348)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECC
T ss_pred ceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCC
Confidence 999999999999999999999999999999874 4999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeeeecc--CCccceeEecc-chhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEE
Q 007094 251 NILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYC 326 (618)
Q Consensus 251 ~iLiI~LkRF~~~~--~~K~~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~ 326 (618)
+||+|||+||.+.. ..|+.+.|.|| +.|||.+|+.... ....|+|+|||+|.| +..+|||+||+|+ ..++||+
T Consensus 239 ~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~ 315 (348)
T 3nhe_A 239 KILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHT 315 (348)
T ss_dssp SEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEE
T ss_pred ceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEE
Confidence 99999999998743 47999999999 6899999987543 467899999999999 6899999999998 4789999
Q ss_pred ecCCceeecchhhhccCCeEEEEEEEcCC
Q 007094 327 CNDSYVSVSTLQEVLSEKVYILFFIRANQ 355 (618)
Q Consensus 327 fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~ 355 (618)
|||+.|+++++++|.+.+||||||+|.+.
T Consensus 316 ~nD~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 316 FNDSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp EETTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred EeCCCceECCHHHcCCCCceEEEEEecCC
Confidence 99999999999999999999999999864
No 3
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.7e-59 Score=497.37 Aligned_cols=319 Identities=30% Similarity=0.488 Sum_probs=259.6
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCC-CccChH
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL-TLDAPA 104 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~i~p~ 104 (618)
++||.|+||||||||+||+|+++|+||++++........ . ......++.+.+..++..++.... ..++|.
T Consensus 3 ~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~-----~----~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~ 73 (355)
T 3i3t_A 3 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV-----P----GGGRAQELTEAFADVIGALWHPDSCEAVNPT 73 (355)
T ss_dssp CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------------CHHHHHHHHHHHHTSSCSSCCCBCCH
T ss_pred CcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhc-----C----CCCchhHHHHHHHHHHHHHhcCCCCCcccHH
Confidence 499999999999999999999999999999875443221 0 111334577888888888887654 789999
Q ss_pred HHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCC------CCC---C-C-------------C
Q 007094 105 KIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSG------GGG---G-G-------------E 161 (618)
Q Consensus 105 ~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~------~~~---~-~-------------~ 161 (618)
.|..++....+.|..++||||+|||.+||+.|++++....+..+....... ... . . .
T Consensus 74 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
T 3i3t_A 74 RFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKR 153 (355)
T ss_dssp HHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998654432111000000 000 0 0 0
Q ss_pred cccCCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeecc------cCCHHHHHHhcccccccCCCCcccCCccC
Q 007094 162 TINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVLDGNNKYKCDNCK 235 (618)
Q Consensus 162 ~~~~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~l~g~nky~C~~C~ 235 (618)
......++|.++|+|.+.+.++|..|++.+.+.++|++|+|+++. ..+|+++|+.|+..|.++++|+|.|++|+
T Consensus 154 ~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~ 233 (355)
T 3i3t_A 154 YLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCR 233 (355)
T ss_dssp HHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSC
T ss_pred hhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCC
Confidence 012245789999999999999999999999999999999999976 35999999999999999999999999999
Q ss_pred ccceeEEEEEEeeCCceEEEEEeeeeecc--CCccceeEecc-chhhhccccccCCCCCCCceEEEEEEEeecCCCCCCc
Q 007094 236 KLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGH 312 (618)
Q Consensus 236 ~~~~a~k~~~i~~lP~iLiI~LkRF~~~~--~~K~~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGH 312 (618)
....+.|+..|.++|+||+|||+||.+.. ..|+...|.|| +.|||.+|+.... ....|+|+|||+|.| +.++||
T Consensus 234 ~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~L~avv~H~G-~~~~GH 310 (355)
T 3i3t_A 234 QKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQLYALCNHSG-SVHYGH 310 (355)
T ss_dssp CCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEEEEEEEEEEE-ETTEEE
T ss_pred CccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC--CCcceEEEEEEEecC-CCCCCe
Confidence 99999999999999999999999999843 35999999999 6699999986543 467899999999999 799999
Q ss_pred EEEEEEcCCCceEEecCCceeecchhhhccCCeEEEEEEEcCCCC
Q 007094 313 YYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP 357 (618)
Q Consensus 313 Y~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~~~ 357 (618)
|+||+|. .+.||+|||+.|+++++++|++..||||||+|.+..+
T Consensus 311 Y~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 311 YTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred EEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence 9999999 5679999999999999999999999999999987543
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=5e-59 Score=504.03 Aligned_cols=321 Identities=27% Similarity=0.462 Sum_probs=264.5
Q ss_pred CCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChH
Q 007094 25 PPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPA 104 (618)
Q Consensus 25 ~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~ 104 (618)
.++||.|+||||||||+||+|+++|+||++|+........ .... ......++.+++..++..++......+.|.
T Consensus 61 g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~---~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~ 134 (396)
T 2gfo_A 61 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDI---NRSN---LLGHKGEVAEEFGIIMKALWTGQYRYISPK 134 (396)
T ss_dssp TCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHC---CTTC---TTSCTTHHHHHHHHHHHHHHHSCEEEECCH
T ss_pred CcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhh---cccC---CCCcccHHHHHHHHHHHHHHcCCCceECHH
Confidence 3599999999999999999999999999999875442211 0010 111223456677777888887777889999
Q ss_pred HHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCC---------CcccCCCCccccccc
Q 007094 105 KIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGG---------ETINGGSSVVKEIFG 175 (618)
Q Consensus 105 ~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~I~~lF~ 175 (618)
.|+.++....+.|..++||||+|||.+||+.|++++.......... ....+.... .......++|.++|+
T Consensus 135 ~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~-~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~ 213 (396)
T 2gfo_A 135 DFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK-EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQ 213 (396)
T ss_dssp HHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC----------TTSCHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccc-cccccccchhhHHHHHHHHhhhccCCccchhhC
Confidence 9999999999999999999999999999999999976443211100 000000000 001224678999999
Q ss_pred eEEEEEEEeCCCCCeeeeeeeeEEEEEeecc--cCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceE
Q 007094 176 GALQSQVKCLACGAESNKVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNIL 253 (618)
Q Consensus 176 g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iL 253 (618)
|++.++++|..|+..+.+.|+|++|+|+|+. ..+|++||+.|+.+|.++++|+|.|++|+....+.|+..|.++|+||
T Consensus 214 G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL 293 (396)
T 2gfo_A 214 GQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVL 293 (396)
T ss_dssp EEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEE
T ss_pred cEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEE
Confidence 9999999999999999999999999999986 46899999999999999999999999999999999999999999999
Q ss_pred EEEEeeeeecc--CCccceeEecc-chhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEecC
Q 007094 254 VIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCND 329 (618)
Q Consensus 254 iI~LkRF~~~~--~~K~~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~-~~~W~~fND 329 (618)
+|||+||.++. ..|+.+.|.|| +.|||.+|+.... .....|+|+|||+|.| +.++|||+||+|+. +++||+|||
T Consensus 294 iihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD 371 (396)
T 2gfo_A 294 LVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPK-NNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDD 371 (396)
T ss_dssp EEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCC-SSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEET
T ss_pred EEEecceeccCccceecCceEecchhhccccccccCCC-CCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeC
Confidence 99999999843 36999999999 5799999987532 3457899999999999 89999999999984 689999999
Q ss_pred CceeecchhhhccCCeEEEEEEEcC
Q 007094 330 SYVSVSTLQEVLSEKVYILFFIRAN 354 (618)
Q Consensus 330 s~Vt~v~~~ev~s~~aYmLfY~R~~ 354 (618)
+.|+++++++|.+..||||||+|.+
T Consensus 372 ~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 372 HEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp TEEEECCHHHHSCTTEEEEEEECC-
T ss_pred CCeEECCHHHcCCCCceEEEEEEcC
Confidence 9999999999999999999999864
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.4e-57 Score=485.38 Aligned_cols=292 Identities=27% Similarity=0.435 Sum_probs=253.0
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHH
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~ 105 (618)
++||.|+||||||||+||+|+++|+||++++...... . ....++.++|..+|..++.+. ..+.|..
T Consensus 6 ~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-------~------~~~~~~~~~l~~lf~~l~~~~-~~~~~~~ 71 (353)
T 1nb8_A 6 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-------D------DSSKSVPLALQRVFYELQHSD-KPVGTKK 71 (353)
T ss_dssp CCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-------S------CTTTCHHHHHHHHHHHHHHCS-SCBCCHH
T ss_pred CCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-------C------cccccHHHHHHHHHHHHhhcC-CCCCCHH
Confidence 5999999999999999999999999999997643211 0 123457788888888887655 5788888
Q ss_pred HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 007094 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (618)
Q Consensus 106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i~C~ 185 (618)
|...+. ++.|..++||||+|||.+||+.|++++... ...++|.++|+|.+.+.++|.
T Consensus 72 l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~---------------------~~~s~i~~~F~g~~~~~i~C~ 128 (353)
T 1nb8_A 72 LTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------------CVEGTIPKLFRGKMVSYIQCK 128 (353)
T ss_dssp HHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS---------------------TTTTHHHHHHCEEEEEEEEES
T ss_pred HHhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC---------------------CccchhhhhceeEEEEEEEec
Confidence 887765 467889999999999999999999875321 124689999999999999999
Q ss_pred CCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc-
Q 007094 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF- 264 (618)
Q Consensus 186 ~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~- 264 (618)
.|+..+.+.++|++|+|++++..+|+++|..|+.+|.++++++|.|+.|+ .+.+.|+..|.++|+||+|||+||.++.
T Consensus 129 ~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~ 207 (353)
T 1nb8_A 129 EVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQ 207 (353)
T ss_dssp SSCCEEEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC----
T ss_pred cCCCeeceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecc
Confidence 99999999999999999999999999999999999999999999999996 5678999999999999999999999843
Q ss_pred ---CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEecCCceeecchhhh
Q 007094 265 ---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEV 340 (618)
Q Consensus 265 ---~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~fNDs~Vt~v~~~ev 340 (618)
..|+++.|.||..|||.+|+..........|+|+|||+|.| +.++|||+||+|+ .+++||+|||+.|+++++++|
T Consensus 208 ~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v 286 (353)
T 1nb8_A 208 TDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEA 286 (353)
T ss_dssp ----CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEES-STTCCCEEEEECTTSSSCCEEEETTEEEECCHHHH
T ss_pred cCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeC-CCCCcEEEEEEecCCCCCEEEEECcceEECCHHHH
Confidence 36999999999999999999865545678999999999999 4899999999996 578999999999999999988
Q ss_pred cc---------------CCeEEEEEEEcCCC
Q 007094 341 LS---------------EKVYILFFIRANQR 356 (618)
Q Consensus 341 ~s---------------~~aYmLfY~R~~~~ 356 (618)
+. .+||||||+|.+..
T Consensus 287 ~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 287 IEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (353)
T ss_dssp TGGGSCCC-------CCEEEEEEEEEETTTH
T ss_pred HHHhcCCCccccccCcCCeEEEEEEEECchh
Confidence 73 57999999998764
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=5.6e-58 Score=495.72 Aligned_cols=321 Identities=20% Similarity=0.265 Sum_probs=255.9
Q ss_pred CCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCc
Q 007094 21 KRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTL 100 (618)
Q Consensus 21 ~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (618)
+....|+||.|+||||||||+||+|+++|+||++|+........ .. ......++.++|..+|..++... ..
T Consensus 9 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~-----~~---~~~~~~~l~~~l~~lf~~l~~~~-~~ 79 (404)
T 2ayn_A 9 SAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRA-----SG---EMASAQYITAALRDLFDSMDKTS-SS 79 (404)
T ss_dssp --CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC--------------CHHHHHHHHHHHHHHHHHHHC-SE
T ss_pred hccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-----CC---CCCcccHHHHHHHHHHHHHhcCC-Cc
Confidence 33567799999999999999999999999999999986543100 00 11134568899999999888765 88
Q ss_pred cChHHHHHHHHhhhcccCC------CCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCcccccc
Q 007094 101 DAPAKIQSCLRIFAEHFKC------GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIF 174 (618)
Q Consensus 101 i~p~~~~~~L~~l~~~f~~------g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF 174 (618)
+.|..|+.+|+...+.|.+ ++||||+|||.+||+.|++++...... ...+......+........++|.++|
T Consensus 80 v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~s~i~~~F 157 (404)
T 2ayn_A 80 IPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDD--SVKETDSSSASAATPSKKKSLIDQFF 157 (404)
T ss_dssp ECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC--------------------CCHHHHHT
T ss_pred CChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCC--cccccchhhhhhhhccccCchhhhhc
Confidence 9999999999999898984 899999999999999999987432110 00000000001111234567999999
Q ss_pred ceEEEEEEEeCCCCCee--eeeeeeEEEEEeeccc-CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCc
Q 007094 175 GGALQSQVKCLACGAES--NKVDEIMDISLDILNS-CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPN 251 (618)
Q Consensus 175 ~g~l~~~i~C~~C~~~s--~~~E~f~~LsL~i~~~-~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~ 251 (618)
+|.+.++++|..|+..+ .+.|+|++|+|+|+.. .+|+++|+.|+. |.++ |.|++|+....+.|+.+|.++|+
T Consensus 158 ~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~ 232 (404)
T 2ayn_A 158 GVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPA 232 (404)
T ss_dssp CEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCS
T ss_pred cEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCC
Confidence 99999999999999995 7899999999999974 689999999987 4444 89999999999999999999999
Q ss_pred eEEEEEeeeeecc----CCccceeEeccchhhhccccccCC---------------------------------------
Q 007094 252 ILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS--------------------------------------- 288 (618)
Q Consensus 252 iLiI~LkRF~~~~----~~K~~~~V~fP~~LdL~~~~~~~~--------------------------------------- 288 (618)
||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 233 vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 312 (404)
T 2ayn_A 233 YLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYE 312 (404)
T ss_dssp SEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------C
T ss_pred ceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhcccccccccccccc
Confidence 9999999999843 379999999999999999986420
Q ss_pred ---------CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhccCC-------eEEEEEEE
Q 007094 289 ---------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEK-------VYILFFIR 352 (618)
Q Consensus 289 ---------~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~-------aYmLfY~R 352 (618)
......|+|+|||+|.|.++++|||+||+|+.+++||+|||+.|+++++++|+... ||||||+|
T Consensus 313 ~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r 392 (404)
T 2ayn_A 313 PFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGP 392 (404)
T ss_dssp CCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEEC
T ss_pred ccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEe
Confidence 12357899999999999779999999999998899999999999999999998755 99999999
Q ss_pred cCCCC
Q 007094 353 ANQRP 357 (618)
Q Consensus 353 ~~~~~ 357 (618)
.+...
T Consensus 393 ~~~~~ 397 (404)
T 2ayn_A 393 RRVEI 397 (404)
T ss_dssp C----
T ss_pred cCCCC
Confidence 87643
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=6.2e-56 Score=490.55 Aligned_cols=310 Identities=30% Similarity=0.549 Sum_probs=260.7
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCC-------
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL------- 98 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------- 98 (618)
.+||.|+||||||||+||+|+++|+||++++...+...+ . ......|+.+++..++..++....
T Consensus 141 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~-----~----~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~ 211 (476)
T 3mhs_A 141 LSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNC-----K----VRSPDKCFSCALDKIVHELYGALNTKQASSS 211 (476)
T ss_dssp CCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHC-----S----SCCTTTCHHHHHHHHHHHHHSCCCC------
T ss_pred CCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhc-----c----CCCcccchHHHHHHHHHHHhhcccccccccc
Confidence 499999999999999999999999999999875543332 1 112456788999999988876432
Q ss_pred --CccChHHHHHHHH---hhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccc
Q 007094 99 --TLDAPAKIQSCLR---IFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEI 173 (618)
Q Consensus 99 --~~i~p~~~~~~L~---~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~l 173 (618)
..+.|..+...+. ...+.|.+++||||+|||.+||+.|++++.......... .........++|.++
T Consensus 212 ~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~--------~~~~~~~~~s~i~~~ 283 (476)
T 3mhs_A 212 STSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEV--------SRANNKQCECIVHTV 283 (476)
T ss_dssp --CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC---------------CCCSCCSHHHHH
T ss_pred cccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccc--------cccccccCCCcceee
Confidence 2456666666554 678899999999999999999999999876543211000 001113446899999
Q ss_pred cceEEEEEEEeCCCCCeee-eeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCce
Q 007094 174 FGGALQSQVKCLACGAESN-KVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNI 252 (618)
Q Consensus 174 F~g~l~~~i~C~~C~~~s~-~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~i 252 (618)
|+|.+.++++|..|+.++. +.++|++|+|++++..+|+++|+.|+.+|.+++.+ |.|++|+....+.|+.+|.++|+|
T Consensus 284 F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~v 362 (476)
T 3mhs_A 284 FEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSV 362 (476)
T ss_dssp SCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSE
T ss_pred cceEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcc
Confidence 9999999999999999975 48999999999999999999999999999999755 999999999999999999999999
Q ss_pred EEEEEeeeeecc---CCccceeEeccchhhhccccccCCC--------CCCCceEEEEEEEeecCCCCCCcEEEEEEcCC
Q 007094 253 LVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQ--------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI 321 (618)
Q Consensus 253 LiI~LkRF~~~~---~~K~~~~V~fP~~LdL~~~~~~~~~--------~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~ 321 (618)
|+|||+||.+.. ..|+++.|.||..|||.+|+..... .....|+|+|||+|.| +.++|||+||+|..+
T Consensus 363 L~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~vr~~~ 441 (476)
T 3mhs_A 363 LVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISG 441 (476)
T ss_dssp EEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEE-CSSSEEEEEEEECTT
T ss_pred eEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCC-CCCCCceEEEEECCC
Confidence 999999999742 3699999999999999999876543 2456799999999999 699999999999888
Q ss_pred CceEEecCCceeecchhhhccCCeEEEEEEEcC
Q 007094 322 GRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (618)
Q Consensus 322 ~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~ 354 (618)
++||+|||+.|+++++++|+..+||||||+|++
T Consensus 442 ~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 442 GQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp SCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 999999999999999999999999999999975
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=5e-56 Score=482.93 Aligned_cols=296 Identities=21% Similarity=0.307 Sum_probs=247.1
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCc-hhhhhccCchHHHHHHHHHHhhcCCCCcc
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSA-LDAERKRECPFCILEKRIVRSLSVDLTLD 101 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 101 (618)
...|+||.|+||||||||+||+|+++|+||++|+.......+ ... ........++.++|..+|..++......+
T Consensus 21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v 95 (415)
T 1vjv_A 21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGV-----SNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSV 95 (415)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCC-----SCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEE
T ss_pred CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-----CCcccccccchhHHHHHHHHHHHHHhcCCCCcc
Confidence 566799999999999999999999999999999986543221 100 00011244789999999999998777899
Q ss_pred ChHHHHHHHHhhhcccC-------CCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCcccccc
Q 007094 102 APAKIQSCLRIFAEHFK-------CGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIF 174 (618)
Q Consensus 102 ~p~~~~~~L~~l~~~f~-------~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF 174 (618)
.|..|+.+|....+.|. .++||||+|||.+||+.|++++.. ++|.++|
T Consensus 96 ~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------------------------~~i~~~F 150 (415)
T 1vjv_A 96 LPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------------------KFSEDFR 150 (415)
T ss_dssp CCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------------------HHHTTTC
T ss_pred CHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-------------------------chHHHHH
Confidence 99999999999999998 789999999999999999998631 5789999
Q ss_pred ceEEEEEEEeCCCCCee--eeeeeeEEEEEeeccc-CCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCc
Q 007094 175 GGALQSQVKCLACGAES--NKVDEIMDISLDILNS-CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPN 251 (618)
Q Consensus 175 ~g~l~~~i~C~~C~~~s--~~~E~f~~LsL~i~~~-~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~ 251 (618)
+ .+.++++|..|+..+ .+.|+|++|+|+++.. .+|+++|+.|+..+ ++ |.|++|+....+.|+.+|.++|+
T Consensus 151 ~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~----~~c~~c~~~~~a~k~~~i~~lP~ 224 (415)
T 1vjv_A 151 I-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-IE----KRSDLTGANSIYSVEKKISRLPK 224 (415)
T ss_dssp E-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEEEEEEEEECBS
T ss_pred H-hheEEEEECCCCCCccccccccceeeeeccccccchHHHHHHHHhhhh-hh----hcccccCCcccEEEEEEcccCCC
Confidence 9 999999999999997 5899999999999875 58999999998743 44 79999999999999999999999
Q ss_pred eEEEEEeeeeecc----CCccceeEeccchhhhccccccC----------------------------------------
Q 007094 252 ILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKA---------------------------------------- 287 (618)
Q Consensus 252 iLiI~LkRF~~~~----~~K~~~~V~fP~~LdL~~~~~~~---------------------------------------- 287 (618)
||+|||+||.++. ..|+++.|.||..|||.+|+...
T Consensus 225 vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~ 304 (415)
T 1vjv_A 225 FLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVM 304 (415)
T ss_dssp EEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CC
T ss_pred eeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhcccccccccccc
Confidence 9999999999853 27999999999999999998531
Q ss_pred ----------------------------------CCCCCCceEEEEEEEeecCCCCCCcEEEEEEc--CCCceEEecCCc
Q 007094 288 ----------------------------------SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD--AIGRWYCCNDSY 331 (618)
Q Consensus 288 ----------------------------------~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~--~~~~W~~fNDs~ 331 (618)
.......|+|+|||+|.|.++.+|||+||+|+ ..++||+|||+.
T Consensus 305 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~ 384 (415)
T 1vjv_A 305 TPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDK 384 (415)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTE
T ss_pred ccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCc
Confidence 01234789999999999977999999999998 679999999999
Q ss_pred eeecchhhhccCC-------eEEEEEEEcC
Q 007094 332 VSVSTLQEVLSEK-------VYILFFIRAN 354 (618)
Q Consensus 332 Vt~v~~~ev~s~~-------aYmLfY~R~~ 354 (618)
|+++++++|.... ||||||+|++
T Consensus 385 V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 385 VSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 9999999998754 9999999975
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=4.7e-55 Score=489.06 Aligned_cols=294 Identities=28% Similarity=0.438 Sum_probs=253.2
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 102 (618)
.| ++||.|+||||||||+||+|+++|+||++++...... . ....++.++|+++|..++... ..+.
T Consensus 173 ~g-~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~-------~------~~~~~~~~~l~~lf~~l~~~~-~~~~ 237 (522)
T 2f1z_A 173 TG-YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-------D------DSSKSVPLALQRVFYELQHSD-KPVG 237 (522)
T ss_dssp TS-CCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS-------S------CTTTCHHHHHHHHHHHHHHCS-SCBC
T ss_pred CC-ccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC-------C------cccchHHHHHHHHHHHHhcCC-CccC
Confidence 44 5999999999999999999999999999997643211 0 123457788889888887765 5678
Q ss_pred hHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 007094 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i 182 (618)
|..|+..+. .+.|..++||||+|||.+||+.|++++... ...++|.++|+|++.+.+
T Consensus 238 ~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~---------------------~~~s~i~~lF~G~~~s~i 294 (522)
T 2f1z_A 238 TKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------------CVEGTIPKLFRGKMVSYI 294 (522)
T ss_dssp CTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS---------------------TTTTHHHHHHCEEEEEEE
T ss_pred cHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC---------------------ccccchhhheeEEEEEEE
Confidence 888877654 367888999999999999999999976421 124689999999999999
Q ss_pred EeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeee
Q 007094 183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (618)
Q Consensus 183 ~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~ 262 (618)
+|..|++.+.+.++|++|+|+|++..+|+++|..|+..|.++++++|.|+.|+ .+.+.|+..|.++|+||+|||+||.+
T Consensus 295 ~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~ 373 (522)
T 2f1z_A 295 QCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMY 373 (522)
T ss_dssp CCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEE
T ss_pred EcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEE
Confidence 99999999999999999999999999999999999999999999999999996 57889999999999999999999998
Q ss_pred cc----CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEecCCceeecch
Q 007094 263 IF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTL 337 (618)
Q Consensus 263 ~~----~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~-~~~~W~~fNDs~Vt~v~~ 337 (618)
+. ..|+++.|.||..|||.+|+..........|+|+|||+|.| +.++|||+||+|+ ..++||+|||+.|+++++
T Consensus 374 ~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~ 452 (522)
T 2f1z_A 374 DPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTK 452 (522)
T ss_dssp CSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEC-SSSCSEEEEEECTTSSSCCEEEETTEEEECCH
T ss_pred cccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEecc-cCCCceEEEEEecCCCCCEEEEECceeEECCH
Confidence 43 36999999999999999999865545678999999999999 5899999999996 578999999999999999
Q ss_pred hhhcc---------------CCeEEEEEEEcCCC
Q 007094 338 QEVLS---------------EKVYILFFIRANQR 356 (618)
Q Consensus 338 ~ev~s---------------~~aYmLfY~R~~~~ 356 (618)
++|+. .+||||||+|.+..
T Consensus 453 ~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 453 EEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 486 (522)
T ss_dssp HHHSTTSSCCC--------CEEEEEEEEEETTSH
T ss_pred HHHHHhhcCCCccccccCcCCceEEEEEEECCch
Confidence 99874 57999999998764
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-52 Score=487.07 Aligned_cols=292 Identities=27% Similarity=0.353 Sum_probs=251.0
Q ss_pred CCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCC-------
Q 007094 25 PPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD------- 97 (618)
Q Consensus 25 ~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------- 97 (618)
.++||.|+||||||||+||+|+++|+||++|+........ . .......++.+++.+++..++...
T Consensus 343 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-----~---~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~ 414 (854)
T 3ihp_A 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQ-----N---APTDPTQDFSTQVAKLGHGLLSGEYSKPVPE 414 (854)
T ss_dssp TCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHH-----H---CCSCGGGCHHHHHHHHHHHHHSCC-------
T ss_pred CccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhc-----c---ccCCccccHHHHHHHHHHHHhcccccccccc
Confidence 3499999999999999999999999999999754321110 0 011244578889999888887532
Q ss_pred -------------CCccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCccc
Q 007094 98 -------------LTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETIN 164 (618)
Q Consensus 98 -------------~~~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~ 164 (618)
...+.|..|+.++....+.|..++||||+|||.+||+.|++++.
T Consensus 415 ~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~----------------------- 471 (854)
T 3ihp_A 415 SGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR----------------------- 471 (854)
T ss_dssp --------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-----------------------
T ss_pred ccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc-----------------------
Confidence 35899999999999999999999999999999999999998752
Q ss_pred CCCCccccccceEEEEEEEeCCCCCeeeeeeeeEEEEEeeccc--------------------------------CCHHH
Q 007094 165 GGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS--------------------------------CSLKE 212 (618)
Q Consensus 165 ~~~s~I~~lF~g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~--------------------------------~sLed 212 (618)
..+.|.++|.|.+.++++|..|+.++.+.++|++|+|+|+.. .+|++
T Consensus 472 -~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~d 550 (854)
T 3ihp_A 472 -SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSS 550 (854)
T ss_dssp -TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHH
T ss_pred -ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHH
Confidence 136789999999999999999999999999999999999852 49999
Q ss_pred HHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeeecc---CCccceeEeccchhhhccccccCC-
Q 007094 213 AMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKAS- 288 (618)
Q Consensus 213 ~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~---~~K~~~~V~fP~~LdL~~~~~~~~- 288 (618)
||+.|+.+|.+++ |.|++|+..+.+.|+.+|.++|+||+|||+||.++. ..|+++.|.||..|||.+|+..+.
T Consensus 551 cL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q 627 (854)
T 3ihp_A 551 CLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 627 (854)
T ss_dssp HHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSC
T ss_pred HHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCC
Confidence 9999999999997 999999999999999999999999999999999832 369999999999999999965311
Q ss_pred --------------------------------------------------------------------------------
Q 007094 289 -------------------------------------------------------------------------------- 288 (618)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (618)
T Consensus 628 ~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~ 707 (854)
T 3ihp_A 628 PGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSS 707 (854)
T ss_dssp TTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC---
T ss_pred CCceecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007094 289 -------------------------------------------------------------------------------- 288 (618)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (618)
T Consensus 708 ~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (854)
T 3ihp_A 708 GPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVG 787 (854)
T ss_dssp -----------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------
T ss_pred cccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccccccccccccccccccccccccccccc
Confidence
Q ss_pred ---CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhccCCeEEEEEEEcC
Q 007094 289 ---QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (618)
Q Consensus 289 ---~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~ 354 (618)
.+....|+|+|||+|.|.+.++|||+||+|. .++||+|||+.|+++ ++.....||||||+|.+
T Consensus 788 ~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 788 PKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred CCCCCCCceEEEEEEEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 0012269999999999988999999999999 799999999999997 45677899999999976
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.94 E-value=4.1e-28 Score=253.01 Aligned_cols=227 Identities=22% Similarity=0.289 Sum_probs=152.4
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (618)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 102 (618)
.|.|.||.|+||||||||.||+|+++|++++.|+.+...... .. ....+...|.+.+...++. ..+.
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-----~~------~~~~l~~~L~r~i~~~Lrk--~~~~ 72 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-----VE------YYSETQELLRTEIVNPLRI--YGYV 72 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-----CT------THHHHHHHHHHTTHHHHHH--TSEE
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-----ch------hHHHHHHHHHHHHHHHHhh--cCCC
Confidence 577899999999999999999999999999999987542210 00 0001344453444444444 7888
Q ss_pred hHHHHHHHHhhhcccCC-----CCcCcHHHHHHHHHHHHHHH-hh-hhhhhccCCCCCCCCCCCCCcccCCCCccccccc
Q 007094 103 PAKIQSCLRIFAEHFKC-----GRQEDAHEFLRYVIDACHNT-CL-RLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFG 175 (618)
Q Consensus 103 p~~~~~~L~~l~~~f~~-----g~QqDA~Efl~~LLd~L~~e-l~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~ 175 (618)
|..++..|+...+.|.. .+||||.||+..||..|... .. .... .. .....+.+.++|.
T Consensus 73 P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s---~~------------~~~~~~~~~q~f~ 137 (374)
T 2vhf_A 73 CATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRS---AG------------QKVQDCYFYQIFM 137 (374)
T ss_dssp CHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEE---TT------------CCCEEESCEECCC
T ss_pred cHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhccccccccc---cc------------ccccccHHHHHhc
Confidence 99999999988887755 58999999999999988753 10 1000 00 0011245666665
Q ss_pred eEEEEEEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEE
Q 007094 176 GALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVI 255 (618)
Q Consensus 176 g~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI 255 (618)
. ..+. . ...++.++++..+- -+| +.|.++|++|+|
T Consensus 138 --------------E--~~e~---~-----~~e~~~qL~e~nfl---~~g------------------ikisrLP~yLtV 172 (374)
T 2vhf_A 138 --------------E--KNEK---V-----GVPTIQQLLEWSFI---NSN------------------LKFAEAPSCLII 172 (374)
T ss_dssp --------------C--CC-----C-----CCCBHHHHHHHHHH---HHT------------------EEESSCCSEEEE
T ss_pred --------------C--cccc---c-----CCcHHHHhhhHHHH---HcC------------------CeeecCCcceEE
Confidence 0 0000 0 02344555433211 111 239999999999
Q ss_pred EEeeeeeccCCccceeEeccchhhhccccccCC--------------------------C--------------------
Q 007094 256 QLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKAS--------------------------Q-------------------- 289 (618)
Q Consensus 256 ~LkRF~~~~~~K~~~~V~fP~~LdL~~~~~~~~--------------------------~-------------------- 289 (618)
|+.||. ...|+.+.|.||.+||+.+++.+.. .
T Consensus 173 q~vRFg--KkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (374)
T 2vhf_A 173 QMPRFG--KDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLN 250 (374)
T ss_dssp ECCCCS--SSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTT
T ss_pred eeeccC--ccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhc
Confidence 999993 4469999999999999988865321 0
Q ss_pred ---------------------CCCCceEEEEEEEeecCCCCCCcEEEEEEc--CCCceEEecC
Q 007094 290 ---------------------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKD--AIGRWYCCND 329 (618)
Q Consensus 290 ---------------------~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~--~~~~W~~fND 329 (618)
.+...|+|+|||+ +++|||+||||. .+++|+.||-
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 251 HKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp CCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred ccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 0126899999999 677999999998 5799999986
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.10 E-value=0.007 Score=58.40 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.2
Q ss_pred EEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecc
Q 007094 299 GTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVST 336 (618)
Q Consensus 299 aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~ 336 (618)
+-+++.| +.++|||+.+.... + +.+|-..+.+++
T Consensus 162 ~~~vF~G-~~~~GHY~~~~~~~-~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTG-TTQNGHYMVDDIEH-G--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEES-CTTTCEEEEEETTT-T--EEEETTEEECCC
T ss_pred eEEEEEc-CCCCceEEEEeccc-c--eEEeCCceeEcc
Confidence 4567799 79999999997662 2 888888888876
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.82 E-value=0.047 Score=55.88 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.6
Q ss_pred EEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecch
Q 007094 298 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTL 337 (618)
Q Consensus 298 ~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~ 337 (618)
++..++.| +.++|||+.+... ... |++|-..+.+++.
T Consensus 260 ~~a~vF~G-~~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTG-NYQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEES-CGGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred EEEEEEEC-CCCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 34455689 6789999999875 233 7999999988863
No 14
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=81.72 E-value=1.1 Score=37.80 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhh
Q 007094 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKR 602 (618)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (618)
.+.|++--..-|..|||.|+|...-|+.=|
T Consensus 22 ~erL~~lL~~rL~EcGW~Devr~~~r~~i~ 51 (96)
T 3mhs_B 22 YELISNELKARLLQEGWVDKVKDLTKSEMN 51 (96)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 345555556679999999999998887543
No 15
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=77.62 E-value=1.7 Score=36.99 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhh
Q 007094 573 EEVLKKEASSVLQSCGWSEKVLSYMRSR 600 (618)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (618)
.+.|++.-..-|.-|||.|+|...-|..
T Consensus 26 ~erL~~lL~~rL~EcGW~Devr~~~r~~ 53 (101)
T 4dhx_B 26 RERLKELLRAKLIECGWKDQLKAHCKEV 53 (101)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 3445555556789999999999887764
No 16
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=72.71 E-value=1.6 Score=38.94 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=34.0
Q ss_pred EEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhccCCeEEEEEEEcCCCCC
Q 007094 297 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPV 358 (618)
Q Consensus 297 L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~~~~ 358 (618)
..|-|.-.|. +|-+-++-. +..||.+||+...+...... =+|+|.--++.|.
T Consensus 109 fhAgIflkg~----eHAVFa~~T-S~GWyaiDDe~fypwtPdps-----dVLVfvPyDqEpl 160 (167)
T 1qmy_A 109 FHAGIFLKGQ----EHAVFACVT-SNGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEPL 160 (167)
T ss_dssp EEEEEEEETT----TEEEEEECC-TTSSEEEETTEEEECCCCGG-----GEEEEEECC----
T ss_pred hhhheeecCC----CceEEEEEc-cCceEEecccccccCCCChh-----hEEEEccCCcccc
Confidence 3555666665 898888877 78899999999998753221 2466666665543
No 17
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=39.86 E-value=1e+02 Score=28.18 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=43.4
Q ss_pred ccCCccCccceeEEEEEEeeCCceEEEEEeeeeeccCCccceeEecc-chhhhccccccCCCCCCCceEEEEEEEeecCC
Q 007094 229 YKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFS 307 (618)
Q Consensus 229 y~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~~~~~K~~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s 307 (618)
++|..|++...+. |...|.+ ..+......|....+.|. .-|.+..|.-. ..|... +
T Consensus 71 ~KCk~C~re~Si~----i~~~~~~-----~~y~~~d~~k~~~i~~FDCRGlEp~eF~p~------~~w~a~--------~ 127 (164)
T 1zso_A 71 IKWTEYPKYSTIN----FVNTKNS-----CSYEEVNNNEWRDFASFECRGIELIDFFPS------NNFIVE--------D 127 (164)
T ss_dssp ECCSSSSCCEEEE----EECCTTT-----TEEEGGGTTSCEEEEEEEEESEEEEEECCC------SCEEEE--------E
T ss_pred EeccccCCcceEE----EEeCCCC-----cccccccCCCceEEEEEECCCeeeEEEecC------CcEEEE--------E
Confidence 6999998654443 4444421 012112234445555555 23444444322 223322 2
Q ss_pred CCCCcEEEEEEcCCCceEEecCCceeecchhh
Q 007094 308 PDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQE 339 (618)
Q Consensus 308 ~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~e 339 (618)
..+| -+.-|--..+.|+-||+..-.+|+..+
T Consensus 128 ~esG-~f~dvDLse~eW~DYDEk~~~~VsI~e 158 (164)
T 1zso_A 128 TKGK-LYYDVNLSDQNWCDYNEEHEMCVGIYN 158 (164)
T ss_dssp TTSC-EEEEECCTTSCEEEEETTTTEEEEEEE
T ss_pred CCCC-cEEeeecCCCceeccccCCCCeEEEEE
Confidence 4567 333232245789999997766665443
No 18
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=35.52 E-value=15 Score=23.44 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhhhhc
Q 007094 591 EKVLSYMRSRKRQCAHE 607 (618)
Q Consensus 591 ~~~~~~~~~~~~~~~~~ 607 (618)
-++.+||.|-||..+.+
T Consensus 11 tdilsfmksgkraaale 27 (33)
T 3c0t_B 11 TDILSFMKSGKRAAALE 27 (33)
T ss_dssp HHHHHHHHHCCCCGGGC
T ss_pred HHHHHHHHcchHHHHHH
Confidence 46889999999987765
No 19
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=32.82 E-value=17 Score=21.45 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=6.8
Q ss_pred hHHHHHHH
Q 007094 590 SEKVLSYM 597 (618)
Q Consensus 590 ~~~~~~~~ 597 (618)
+|+||+|+
T Consensus 10 mddvynyl 17 (22)
T 3e1k_B 10 MDDVYNYI 17 (26)
T ss_pred HHHHHHHh
Confidence 78999986
No 20
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=31.55 E-value=1e+02 Score=27.55 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.1
Q ss_pred CcccccCCCcchHHHHHHHHhcC
Q 007094 26 PLGLRNLGNSCYLNSVLQCLTYT 48 (618)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~i 48 (618)
..|+.|..++|++|++||+...+
T Consensus 13 fys~pN~hdncWLNtilQLfryv 35 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRYV 35 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHHc
Confidence 45999999999999999998754
No 21
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.94 E-value=79 Score=28.00 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=26.2
Q ss_pred EEEEEEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHH--hcccccccCCCCcccCCccCccc
Q 007094 177 ALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQ--KFFQPEVLDGNNKYKCDNCKKLV 238 (618)
Q Consensus 177 ~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~--~~~~~E~l~g~nky~C~~C~~~~ 238 (618)
...-...|..||+.....+... .|.+..+ ..|.+|.+.. .+.|+.|+...
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~----------~~~~~~~~~~h~~p~~~~~--~~~CP~Cgs~~ 117 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKD----------KFDERIKEDIHFIPEVVHA--FLACPKCGSHD 117 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTT----------CCSCCCGGGCCCCGGGCGG--GCSCSSSSCCC
T ss_pred ecCCcEECCCCCCEEecccccc----------ccccccccccccccccccc--CCcCccccCCc
Confidence 3344678999998865332111 1111111 1234444432 26899999754
No 22
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=27.08 E-value=1.1e+02 Score=25.85 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=42.6
Q ss_pred ceEEEEEEEeecCC--C-------CCCcEEEEEEcCCCceEEecCCceeecchhhhccCCeEEEEEEEcCC
Q 007094 294 EYKLFGTIVHSGFS--P-------DSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQ 355 (618)
Q Consensus 294 ~Y~L~aVI~H~G~s--~-------~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~ 355 (618)
..++...|.|-=.+ . --.||+..+.- .+||..|-.+++...++++||+-|+-+...
T Consensus 19 ~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~------~~ng~~v~~~~~~~~iS~NP~~~F~~~~~~ 83 (108)
T 2oxg_Z 19 TVTVKALISHKMESGQRKDADGKLIPRSIINRFTC------ELNGVNVVDVAIDPAVSTNPYFEFDAKVDA 83 (108)
T ss_dssp EEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEEEECTTBCSSCEEEEEEEECS
T ss_pred CEEEEEEeECCCccccccCcCCCccchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecCC
Confidence 46677778884321 1 12789888874 489999999999999999999999988643
No 23
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=25.67 E-value=1.6e+02 Score=24.74 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=44.4
Q ss_pred CCceEEEEEEEeecCC---------CCCCcEEEEEEcCCCceEEecCCceeecchhhhccCCeEEEEEEEcCC
Q 007094 292 QPEYKLFGTIVHSGFS---------PDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQ 355 (618)
Q Consensus 292 ~~~Y~L~aVI~H~G~s---------~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~ 355 (618)
....++...|.|-=.+ .--.||+..+.- .+||..|-.+++...++++||+-|+-+...
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~~------~~ng~~v~~~~~~~~iS~nP~~~F~~~~~~ 82 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEV------YFEGEKVAEARPGPSTSANPLYAFKFKAEK 82 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEECCCSSCCSSCEEEEEEECCS
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecCC
Confidence 3456777788884322 112789888874 489999999999999999999999988643
No 24
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=25.01 E-value=29 Score=21.31 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.6
Q ss_pred hHHHHHHHH
Q 007094 590 SEKVLSYMR 598 (618)
Q Consensus 590 ~~~~~~~~~ 598 (618)
+|+||+|+-
T Consensus 8 MDDvyNylF 16 (26)
T 3bts_E 8 MDDVYNYLF 16 (26)
T ss_pred HHHHHHHhc
Confidence 799999974
No 25
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=21.25 E-value=68 Score=30.15 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=36.7
Q ss_pred EEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhh--------ccCCeEEEEEEEc
Q 007094 297 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEV--------LSEKVYILFFIRA 353 (618)
Q Consensus 297 L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev--------~s~~aYmLfY~R~ 353 (618)
..|+||+.. -|++|..|- ++.||-+|-..-.+.-..+. +....|-+|-.+-
T Consensus 110 ~~~FI~N~~-----~HWfaiRki-gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g 168 (191)
T 3o65_A 110 ERSFICNYK-----QHWFTIRKF-GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKG 168 (191)
T ss_dssp CCEEEEEES-----SCEEEEEEE-TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEES
T ss_pred hhhhhhccc-----cceeeEEec-CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcC
Confidence 458999986 899998888 78999999765444322211 1367888888884
Done!