BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007095
(618 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana
GN=ARI9 PE=2 SV=1
Length = 543
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 22/180 (12%)
Query: 371 DASCLAGLRKHWN------TPLPHEVEDLVGQLVTSCGDDDENSNLNRKWLLS-SKPVVA 423
D SCL R WN +P+ D V + + D+ EN N W+L+ SKP
Sbjct: 237 DVSCLCSYRFCWNCSEDAHSPVDC---DTVSKWIFKNQDESENKN----WMLANSKPCPE 289
Query: 424 VGAGASAVVGASSLSKVLPASTFMKVVSFKA-----PASLKLIMTQTQKAVAIALGKTKV 478
G + ++ P + KA A + ++ Q + A+ + K
Sbjct: 290 CKRPIEKNDGCNHMTCSAPCGHEFCWICLKAYRRHSGACNRFVVEQAESKRALLQSEIKR 349
Query: 479 VAPGLVTSGSNTSPILKAAASAEKIRTVTHSVIASMEKTSFSAMR---TAFYEIMRKRRV 535
V N S LKA EK+++V ++ + TS + ++ A+ +I+ RRV
Sbjct: 350 YTHYYVRWAENQSSRLKAMRDLEKLQSVQLKELSDNQCTSETQLQFTVDAWLQIIECRRV 409
>sp|O23736|GSH1_BRAJU Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea
GN=GSH1 PE=1 SV=1
Length = 514
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 149 HLFAAKRVAKEVGSSF--MVVESRIVRNSIPDNPSGEVDVMNKVQGLVSSLVPQKVGFVV 206
HL+ K VA+E+G F M + + R IP P G D+M V SL G +
Sbjct: 184 HLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSL-----GLDM 238
Query: 207 SSRSRSFRITNDI--ESQMVKLLSSNL 231
R+ + ++ D E+ M++ + L
Sbjct: 239 MLRTCTVQVNLDFSSEADMIRKFRAGL 265
>sp|Q9ZNX6|GSH1_MEDTR Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula
GN=GSH1 PE=2 SV=1
Length = 508
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 149 HLFAAKRVAKEVGSSFMVV--ESRIVRNSIPDNPSGEVDVMNKVQGLVSSLVPQKVGFVV 206
HL+ K VA+E+G F+ + + + R IP P G ++M K V SL G +
Sbjct: 178 HLYQVKAVAEEMGIGFLGIGFQPKWERKDIPMMPKGRYEIMKKYMPKVGSL-----GLDM 232
Query: 207 SSRSRSFRITNDI--ESQMVKLLSSNL 231
R+ + ++ D E+ M++ + L
Sbjct: 233 MFRTCTVQVNLDFSSEADMIRKFRAGL 259
>sp|Q46DY5|FAEHP_METBF Bifunctional enzyme fae/hps OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=faeB-hpsB PE=1 SV=1
Length = 392
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 49 PKSQSVIYILCAQNLSERSAIDTECLIREVRPDA-VVAQVGVLSEVQCEESELGDNGNDP 107
PKS VI I L +R +D IREVRPDA +VA + L E + D D
Sbjct: 195 PKSDHVI-IEAGTPLIKRYGMDVISRIREVRPDAFIVADLKTLDTGNLEARMVADAAGDA 253
Query: 108 LPTSSFGVLKRCFVDKVNKETYE 130
+ S+ + +DK+ +E ++
Sbjct: 254 IVVSALAPI--STIDKLIEEAHK 274
>sp|Q8PXE1|FAEHP_METMA Bifunctional enzyme fae/hps OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=fae-hps PE=3 SV=1
Length = 392
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 41 EFVF-AIRE-PKSQSVIYILCAQNLSERSAIDTECLIREVRPDA-VVAQVGVLSEVQCEE 97
EFV AI E PKS VI I L +R D IR+VRPDA +VA + L E
Sbjct: 185 EFVLSAISEIPKSDHVI-IEAGTPLIKRYGTDVISKIRQVRPDAFIVADLKTLDTGNLEA 243
Query: 98 SELGDNGNDPLPTSSFGVLKRCFVDKVNKETYE 130
+ D D + S+ + +DK+ +E ++
Sbjct: 244 RMVADAAGDAIVVSALAPI--STIDKLIEEAHK 274
>sp|Q8BJM3|R3HCL_MOUSE R3H and coiled-coil domain-containing protein 1-like OS=Mus
musculus GN=R3hcc1l PE=2 SV=1
Length = 775
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 319 NNASRLPINKLRDSNLSNIDFSELALEDKSSALLAQAL 356
+ AS LPI K DSN++ SEL++ D S LL AL
Sbjct: 468 DGASSLPIKKTADSNIATCLDSELSMSDASDVLLESAL 505
>sp|Q02RE5|PLSB_PSEAB Glycerol-3-phosphate acyltransferase OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=plsB PE=3 SV=1
Length = 834
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 13 WPFSFFKYDDLRASKELVNRLSIPEHTKEFVFAIREPKSQSVIYILCAQNLSERSAIDTE 72
+PF F + LR L R E + F ++ +S+ V+Y+L ++S+ + +DTE
Sbjct: 4 YPFRRFGFGALRRLLYLWVR---SETINQSAFTLKIDRSKPVLYVLQQPSVSDLAVVDTE 60
Query: 73 C----LIREVRPDAV 83
C L R V P AV
Sbjct: 61 CRKAGLPRPVMPVAV 75
>sp|A6V1B5|PLSB_PSEA7 Glycerol-3-phosphate acyltransferase OS=Pseudomonas aeruginosa
(strain PA7) GN=plsB PE=3 SV=1
Length = 834
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 13 WPFSFFKYDDLRASKELVNRLSIPEHTKEFVFAIREPKSQSVIYILCAQNLSERSAIDTE 72
+PF F + LR L R E + F ++ +S+ V+Y+L ++S+ + +DTE
Sbjct: 4 YPFRRFGFGALRRLLYLWVR---SETINQSAFTLKIDRSKPVLYVLQQPSVSDLAVVDTE 60
Query: 73 C----LIREVRPDAV 83
C L R V P AV
Sbjct: 61 CRKAGLPRPVMPVAV 75
>sp|Q9HXW7|PLSB_PSEAE Glycerol-3-phosphate acyltransferase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=plsB PE=3 SV=1
Length = 834
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 13 WPFSFFKYDDLRASKELVNRLSIPEHTKEFVFAIREPKSQSVIYILCAQNLSERSAIDTE 72
+PF F + LR L R E + F ++ +S+ V+Y+L ++S+ + +DTE
Sbjct: 4 YPFRRFGFGALRRLLYLWVR---SETINQSAFTLKIDRSKPVLYVLQQPSVSDLAVVDTE 60
Query: 73 C----LIREVRPDAV 83
C L R V P AV
Sbjct: 61 CRKAGLPRPVMPVAV 75
>sp|B7V2U0|PLSB_PSEA8 Glycerol-3-phosphate acyltransferase OS=Pseudomonas aeruginosa
(strain LESB58) GN=plsB PE=3 SV=1
Length = 834
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 13 WPFSFFKYDDLRASKELVNRLSIPEHTKEFVFAIREPKSQSVIYILCAQNLSERSAIDTE 72
+PF F + LR L R E + F ++ +S+ V+Y+L ++S+ + +DTE
Sbjct: 4 YPFRRFGFGALRRLLYLWVR---SETINQSAFTLKIDRSKPVLYVLQQPSVSDLAVVDTE 60
Query: 73 C----LIREVRPDAV 83
C L R V P AV
Sbjct: 61 CRKAGLPRPVMPVAV 75
>sp|Q02963|POLG_PVYHU Genome polyprotein OS=Potato virus Y (strain Hungarian) PE=3 SV=1
Length = 3061
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 52/252 (20%)
Query: 294 EAVDTEVISEVCTFRIAVEGLRIALNNASRLPINKLRD--SNLS-NIDFSELALEDKS-- 348
E V+ E I C F + + L IA+N ++++ S+L N DFS +
Sbjct: 2609 ECVEFEEIDSTCVFFVNGDDLLIAVNPEKESILDRMSQHFSDLGLNYDFSSRTRRKEELW 2668
Query: 349 ----SALLAQALQNQAKKFKTVVAVVDASCLAGLRKHWN-TPLP-HEVEDLVGQLVTSCG 402
LL + + + + +V+++ W+ LP H +E + ++ S G
Sbjct: 2669 FMSHRGLLIEGMYVPKLEEERIVSIL----------QWDRADLPEHRLEAICAAMIESWG 2718
Query: 403 DDDENSNLNR--KWLLSSKPVVAVGA-GASAVVGASSLSKV----------LPASTFMKV 449
+ + R WLL +P + G + + + +L K+ L A T M V
Sbjct: 2719 YSELTHQIRRFYSWLLQQQPFSTIAQEGKAPYIASMALKKLYMNRTVDEEELKAFTEMMV 2778
Query: 450 V------------------SFKAPASLKLIMTQTQKAVAIALGKTKVVAPGLVTSGSNTS 491
+ A S K Q Q ++ L K K + TSG++T
Sbjct: 2779 ALDDELECDTYEVHHQGNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTV 2838
Query: 492 PILKAAASAEKI 503
P +KA S ++
Sbjct: 2839 PRIKAITSKMRM 2850
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,608,312
Number of Sequences: 539616
Number of extensions: 7824778
Number of successful extensions: 22146
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 22137
Number of HSP's gapped (non-prelim): 24
length of query: 618
length of database: 191,569,459
effective HSP length: 124
effective length of query: 494
effective length of database: 124,657,075
effective search space: 61580595050
effective search space used: 61580595050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)