Query 007095
Match_columns 618
No_of_seqs 20 out of 22
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 17:01:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vzf_A NADH-dependent FMN redu 53.9 22 0.00076 31.9 6.0 67 349-429 18-113 (197)
2 1f4p_A Flavodoxin; electron tr 44.3 35 0.0012 28.6 5.4 67 349-429 14-95 (147)
3 3f02_C Neuroserpin; cleaved fo 39.6 21 0.00072 27.2 2.9 35 40-74 12-48 (48)
4 2a5l_A Trp repressor binding p 32.7 70 0.0024 27.9 5.7 72 348-429 18-119 (200)
5 2h4p_B MENT, heterochromatin-a 32.0 38 0.0013 23.7 3.0 24 40-63 9-32 (34)
6 5nul_A Flavodoxin; electron tr 30.3 53 0.0018 27.3 4.3 64 350-428 13-89 (138)
7 3f6r_A Flavodoxin; FMN binding 29.3 89 0.0031 26.2 5.5 66 350-429 16-96 (148)
8 3fvw_A Putative NAD(P)H-depend 27.4 71 0.0024 28.8 4.9 63 354-429 59-121 (192)
9 1hle_B Horse leukocyte elastas 26.8 41 0.0014 23.1 2.4 19 40-58 8-26 (31)
10 2ark_A Flavodoxin; FMN, struct 25.5 1.3E+02 0.0044 26.6 6.1 68 349-427 18-97 (188)
11 3b6i_A Flavoprotein WRBA; flav 24.6 99 0.0034 26.9 5.1 72 349-430 15-117 (198)
12 2xn6_B Thyroxine-binding globu 24.1 63 0.0021 22.9 3.1 24 40-63 9-32 (35)
13 4b63_A L-ornithine N5 monooxyg 23.5 21 0.00071 36.9 0.6 16 416-431 244-259 (501)
14 2q62_A ARSH; alpha/beta, flavo 23.1 1.8E+02 0.0061 27.9 7.0 72 349-429 50-147 (247)
15 2fz5_A Flavodoxin; alpha/beta 21.9 1.2E+02 0.0041 24.7 4.8 63 350-427 14-89 (137)
16 4afx_B Protein Z dependent pro 21.7 56 0.0019 23.3 2.4 23 40-62 10-32 (36)
17 2xpn_B SPT6, chromatin structu 21.5 15 0.00052 25.7 -0.5 7 139-145 6-12 (26)
18 2h7o_A Protein kinase YPKA; YO 21.0 1E+02 0.0034 31.7 4.9 63 241-305 94-166 (303)
19 1czn_A Flavodoxin; FMN binding 20.1 81 0.0028 27.1 3.6 65 350-429 15-91 (169)
20 3ndd_B Alpha-1-antitrypsin; se 20.0 88 0.003 22.3 3.2 24 40-63 10-33 (36)
No 1
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=53.88 E-value=22 Score=31.87 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=42.0
Q ss_pred hHHHHHHHHHH-HHhcCcEEEEEecchhh-------------------hhhh---------hcCCCCChhHHHhhhhhcc
Q 007095 349 SALLAQALQNQ-AKKFKTVVAVVDASCLA-------------------GLRK---------HWNTPLPHEVEDLVGQLVT 399 (618)
Q Consensus 349 ~aLlaQALqsQ-~r~fktVVAVVDaS~lA-------------------GiRk---------hWnTpvP~Ev~~l~~~~~~ 399 (618)
-..+++++.++ +++.|.-|-++|-..+- -|.. -||--+|+.++..++.+
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l-- 95 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDIL-- 95 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhc--
Confidence 34577777777 77667667777765431 1111 15555666666666665
Q ss_pred ccCCCCCCCccccccccCCCCeEEEcCcce
Q 007095 400 SCGDDDENSNLNRKWLLSSKPVVAVGAGAS 429 (618)
Q Consensus 400 ~~d~d~~~~~~dkk~~~~~kpvVaVGAGAt 429 (618)
. ...+.+||++++|.|+.
T Consensus 96 -------~-----~~~~~gK~~~~~~tgg~ 113 (197)
T 2vzf_A 96 -------P-----QFALAGKAALPLATGGS 113 (197)
T ss_dssp -------C-----TTTTTTCEEEEEEEESS
T ss_pred -------c-----ccccCCCEEEEEEECCC
Confidence 1 12468999999988654
No 2
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=44.31 E-value=35 Score=28.64 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhcCcEEEEEecchh--hhhhh-----------hcCCC--CChhHHHhhhhhccccCCCCCCCccccc
Q 007095 349 SALLAQALQNQAKKFKTVVAVVDASCL--AGLRK-----------HWNTP--LPHEVEDLVGQLVTSCGDDDENSNLNRK 413 (618)
Q Consensus 349 ~aLlaQALqsQ~r~fktVVAVVDaS~l--AGiRk-----------hWnTp--vP~Ev~~l~~~~~~~~d~d~~~~~~dkk 413 (618)
-.-+|++|.+++++-|--|-++|.... .-+.. ||+-. +|+.+++..+.+..
T Consensus 14 t~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~-------------- 79 (147)
T 1f4p_A 14 TEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEE-------------- 79 (147)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGG--------------
T ss_pred HHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHh--------------
Confidence 346889999999887877777776542 23433 33444 56667776666510
Q ss_pred cccCCCCeEEEcCcce
Q 007095 414 WLLSSKPVVAVGAGAS 429 (618)
Q Consensus 414 ~~~~~kpvVaVGAGAt 429 (618)
..+.+|++.++|.|..
T Consensus 80 ~~l~~k~~~v~~~g~~ 95 (147)
T 1f4p_A 80 TGAQGRKVACFGCGDS 95 (147)
T ss_dssp SCCTTCEEEEEEEECT
T ss_pred cccCCCEEEEEeecCC
Confidence 1367899999998754
No 3
>3f02_C Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein, protease inhibitor, secreted, serine protease inhibitor, hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 1jjo_E
Probab=39.57 E-value=21 Score=27.20 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=20.2
Q ss_pred cceeEEeecCCCCceEEEeecccccc--cccccHHHH
Q 007095 40 KEFVFAIREPKSQSVIYILCAQNLSE--RSAIDTECL 74 (618)
Q Consensus 40 kqFVfA~R~p~sqsviYiL~aqnLSE--rSa~Da~~L 74 (618)
+-|+|.|++.++++++++=--.|-+. -+.+|.++|
T Consensus 12 rPFlf~I~~~~t~~iLF~G~v~~P~~~~~~~~~~~~~ 48 (48)
T 3f02_C 12 HPFFFLIRNRRTGTILFMGRVMHPETMNTSGHDFEEL 48 (48)
T ss_dssp SCEEEEEEETTTCCEEEEEEESCCCC-----------
T ss_pred CCEEEEEEECCCCcEEEEEEeCCCCcccccccccccC
Confidence 56999999999999998855554433 344555543
No 4
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=32.71 E-value=70 Score=27.90 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHhcCcEEEEEecchh---------------------hhhhh---------hcCCCCChhHHHhhhhh
Q 007095 348 SSALLAQALQNQAKKFKTVVAVVDASCL---------------------AGLRK---------HWNTPLPHEVEDLVGQL 397 (618)
Q Consensus 348 s~aLlaQALqsQ~r~fktVVAVVDaS~l---------------------AGiRk---------hWnTpvP~Ev~~l~~~~ 397 (618)
.-..+|+++.+.+++-|.-|-++|.... .-|.. -|+--+|+.++.+++.+
T Consensus 18 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~ 97 (200)
T 2a5l_A 18 ATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGT 97 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHHHH
Confidence 3456788888888877766667776542 22222 25566777788777776
Q ss_pred ccccCCCCCCCccccccccCCCCeEEEcCcce
Q 007095 398 VTSCGDDDENSNLNRKWLLSSKPVVAVGAGAS 429 (618)
Q Consensus 398 ~~~~d~d~~~~~~dkk~~~~~kpvVaVGAGAt 429 (618)
.... ....+.+||+++++.++.
T Consensus 98 ~~~~----------~~~~l~~K~~~~~~t~g~ 119 (200)
T 2a5l_A 98 SSLW----------LTGSLVGKPAAVFTSTAS 119 (200)
T ss_dssp HHHH----------HHTTTTTCEEEEEEEBSC
T ss_pred HHHh----------hccccCCCEEEEEEecCC
Confidence 2210 012368999999888553
No 5
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=31.95 E-value=38 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=19.0
Q ss_pred cceeEEeecCCCCceEEEeecccc
Q 007095 40 KEFVFAIREPKSQSVIYILCAQNL 63 (618)
Q Consensus 40 kqFVfA~R~p~sqsviYiL~aqnL 63 (618)
+-|+|+|||.++++++++---.|-
T Consensus 9 rPFlf~I~~~~t~~iLF~G~v~~P 32 (34)
T 2h4p_B 9 HPFHFFIRHNKSKTILFFGRFCCP 32 (34)
T ss_dssp SCEEEEEEETTTTEEEEEEEECSC
T ss_pred CCEEEEEEECCCCeEEEEEEeCCC
Confidence 459999999999999887655443
No 6
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=30.34 E-value=53 Score=27.31 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecchh--h----------hhhhhcCCCCCh-hHHHhhhhhccccCCCCCCCcccccccc
Q 007095 350 ALLAQALQNQAKKFKTVVAVVDASCL--A----------GLRKHWNTPLPH-EVEDLVGQLVTSCGDDDENSNLNRKWLL 416 (618)
Q Consensus 350 aLlaQALqsQ~r~fktVVAVVDaS~l--A----------GiRkhWnTpvP~-Ev~~l~~~~~~~~d~d~~~~~~dkk~~~ 416 (618)
..+|++|.+.+++.|--|-++|.+.. . |-=-||....|+ .+++..+++ . + .+
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l---------~----~--~l 77 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEI---------S----T--KI 77 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHH---------G----G--GC
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHH---------H----h--hc
Confidence 35788888888877755666666532 1 222234444565 788888877 1 1 17
Q ss_pred CCCCeEEEcCcc
Q 007095 417 SSKPVVAVGAGA 428 (618)
Q Consensus 417 ~~kpvVaVGAGA 428 (618)
.+|++.++|.++
T Consensus 78 ~~k~~~~f~t~g 89 (138)
T 5nul_A 78 SGKKVALFGSYG 89 (138)
T ss_dssp TTCEEEEEEEES
T ss_pred CCCEEEEEEecC
Confidence 899999999754
No 7
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=29.30 E-value=89 Score=26.21 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecchh--hhhh-h---------hcCC---CCChhHHHhhhhhccccCCCCCCCcccccc
Q 007095 350 ALLAQALQNQAKKFKTVVAVVDASCL--AGLR-K---------HWNT---PLPHEVEDLVGQLVTSCGDDDENSNLNRKW 414 (618)
Q Consensus 350 aLlaQALqsQ~r~fktVVAVVDaS~l--AGiR-k---------hWnT---pvP~Ev~~l~~~~~~~~d~d~~~~~~dkk~ 414 (618)
--+|++|.+++++.|--|-++|.... .-|. + -|+. .+|+.+++..+.+- ..
T Consensus 16 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~--------------~~ 81 (148)
T 3f6r_A 16 ESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFD--------------RI 81 (148)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGG--------------GT
T ss_pred HHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhh--------------cc
Confidence 46889999999888877777776642 1222 1 1443 67777777777761 11
Q ss_pred ccCCCCeEEEcCcce
Q 007095 415 LLSSKPVVAVGAGAS 429 (618)
Q Consensus 415 ~~~~kpvVaVGAGAt 429 (618)
-+.+|++.++|.|..
T Consensus 82 ~l~~k~~~vfg~G~~ 96 (148)
T 3f6r_A 82 GLAGRKVAAFASGDQ 96 (148)
T ss_dssp CCTTCEEEEEEEECT
T ss_pred CCCCCEEEEEEeCCC
Confidence 367899999988654
No 8
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=27.36 E-value=71 Score=28.84 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCcEEEEEecchhhhhhhhcCCCCChhHHHhhhhhccccCCCCCCCccccccccCCCCeEEEcCcce
Q 007095 354 QALQNQAKKFKTVVAVVDASCLAGLRKHWNTPLPHEVEDLVGQLVTSCGDDDENSNLNRKWLLSSKPVVAVGAGAS 429 (618)
Q Consensus 354 QALqsQ~r~fktVVAVVDaS~lAGiRkhWnTpvP~Ev~~l~~~~~~~~d~d~~~~~~dkk~~~~~kpvVaVGAGAt 429 (618)
+.++.+.++...||-+. =-||--+|+-.|..++.+......- +..+ ...+.+||++++++++.
T Consensus 59 ~~~~~~i~~AD~iV~~s---------P~y~~~~p~~lK~~iD~~~~~~~~~--~~~g--~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 59 AHAREEVQEADAIWIFS---------PVYNYAIPGPVKNLLDWLSRSLDLS--DPTG--PSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHHHHHHHHCSEEEEEC---------CCBTTBCCHHHHHHHHHHTSCSCSS--CTTS--CCTTTTCEEEEEEESCC
T ss_pred HHHHHHHHhCCEEEEEC---------cccccCCCHHHHHHHHHhhcccccc--CCCC--CccCCCCEEEEEEeCCC
Confidence 44455555555444332 1366777777777777775422111 1111 23689999999988654
No 9
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=26.81 E-value=41 Score=23.10 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=16.0
Q ss_pred cceeEEeecCCCCceEEEe
Q 007095 40 KEFVFAIREPKSQSVIYIL 58 (618)
Q Consensus 40 kqFVfA~R~p~sqsviYiL 58 (618)
+-|.|+|||.++++++++-
T Consensus 8 rPFlf~I~~~~t~~iLF~G 26 (31)
T 1hle_B 8 HPFIFFIRHNPSANILFLG 26 (31)
T ss_dssp SCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEE
Confidence 4599999999999887764
No 10
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=25.47 E-value=1.3e+02 Score=26.59 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHh-cCcEEEEEecchh--hhhhh---------hcCCCCChhHHHhhhhhccccCCCCCCCcccccccc
Q 007095 349 SALLAQALQNQAKK-FKTVVAVVDASCL--AGLRK---------HWNTPLPHEVEDLVGQLVTSCGDDDENSNLNRKWLL 416 (618)
Q Consensus 349 ~aLlaQALqsQ~r~-fktVVAVVDaS~l--AGiRk---------hWnTpvP~Ev~~l~~~~~~~~d~d~~~~~~dkk~~~ 416 (618)
-..+|+++.+.+++ -|--|-++|.... .-|.+ -|+--+|+.++..++.+.... ...+
T Consensus 18 T~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~-----------~~~l 86 (188)
T 2ark_A 18 TKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDL-----------WGEI 86 (188)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGT-----------TTSC
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhh-----------HHHh
Confidence 45689999999988 7766777887653 33433 277889999999999883210 0236
Q ss_pred CCCCeEEEcCc
Q 007095 417 SSKPVVAVGAG 427 (618)
Q Consensus 417 ~~kpvVaVGAG 427 (618)
.+||++++|.+
T Consensus 87 ~gk~~~~~~t~ 97 (188)
T 2ark_A 87 DGKIACAFSSS 97 (188)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEEEC
Confidence 78999999883
No 11
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=24.58 E-value=99 Score=26.91 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHh-cCcEEEEEecch---------------------hhhhhh---------hcCCCCChhHHHhhhhh
Q 007095 349 SALLAQALQNQAKK-FKTVVAVVDASC---------------------LAGLRK---------HWNTPLPHEVEDLVGQL 397 (618)
Q Consensus 349 ~aLlaQALqsQ~r~-fktVVAVVDaS~---------------------lAGiRk---------hWnTpvP~Ev~~l~~~~ 397 (618)
-..+|+++.+++++ -|.-|-++|... ..-|.. -|+--+|+.++.+++.+
T Consensus 15 t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~ 94 (198)
T 3b6i_A 15 IETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQT 94 (198)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEETTEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhcCCchHHHHHHHHHh
Confidence 45688899999888 676677777653 122222 14455566666666555
Q ss_pred ccccCCCCCCCccccccccCCCCeEEEcCccee
Q 007095 398 VTSCGDDDENSNLNRKWLLSSKPVVAVGAGASA 430 (618)
Q Consensus 398 ~~~~d~d~~~~~~dkk~~~~~kpvVaVGAGAtA 430 (618)
..-. ....+.+||+++++.++..
T Consensus 95 ~~~~----------~~~~l~~K~~~~~~t~g~~ 117 (198)
T 3b6i_A 95 GGLW----------ASGALYGKLASVFSSTGTG 117 (198)
T ss_dssp HHHH----------HHTTTTTCEEEEEEEESSS
T ss_pred hhhh----------hhcccCCCEEEEEEeCCCC
Confidence 2110 0124789999999886543
No 12
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=24.06 E-value=63 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.4
Q ss_pred cceeEEeecCCCCceEEEeecccc
Q 007095 40 KEFVFAIREPKSQSVIYILCAQNL 63 (618)
Q Consensus 40 kqFVfA~R~p~sqsviYiL~aqnL 63 (618)
+-|+|+|||.++++++++---.|-
T Consensus 9 rPFlf~I~~~~t~~iLF~G~v~~P 32 (35)
T 2xn6_B 9 RSFMLLILERSTRSILFLGKVVNP 32 (35)
T ss_dssp BCEEEEEEETTTTEEEEEEEESCT
T ss_pred CCEEEEEEECCCCcEEEEEEeCCc
Confidence 569999999999999887655543
No 13
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=23.48 E-value=21 Score=36.89 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.4
Q ss_pred cCCCCeEEEcCcceee
Q 007095 416 LSSKPVVAVGAGASAV 431 (618)
Q Consensus 416 ~~~kpvVaVGAGAtAv 431 (618)
+++|.|+|||+|++|+
T Consensus 244 ~~gKrV~VVG~G~SA~ 259 (501)
T 4b63_A 244 SKPYNIAVLGSGQSAA 259 (501)
T ss_dssp TSCCEEEEECCSHHHH
T ss_pred cCCcEEEEECCcHHHH
Confidence 5889999999999986
No 14
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=23.08 E-value=1.8e+02 Score=27.90 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhcCcEEEEEecchhhh-------------hh-------------hhcCCCCChhHHHhhhhhccccC
Q 007095 349 SALLAQALQNQAKKFKTVVAVVDASCLAG-------------LR-------------KHWNTPLPHEVEDLVGQLVTSCG 402 (618)
Q Consensus 349 ~aLlaQALqsQ~r~fktVVAVVDaS~lAG-------------iR-------------khWnTpvP~Ev~~l~~~~~~~~d 402 (618)
-..|++++.+.+++-|.-|-++|-..+-= ++ =-||--+|.-.|.+++.+....
T Consensus 50 t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~- 128 (247)
T 2q62_A 50 SRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLST- 128 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCB-
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhcc-
Confidence 34566777777776666677777554320 00 0255555555555555553211
Q ss_pred CCCCCCccccccccCCCCeEEEcCcce
Q 007095 403 DDDENSNLNRKWLLSSKPVVAVGAGAS 429 (618)
Q Consensus 403 ~d~~~~~~dkk~~~~~kpvVaVGAGAt 429 (618)
. ....+.+||+++|++++.
T Consensus 129 -------~-~~~~l~gK~v~~v~tsG~ 147 (247)
T 2q62_A 129 -------G-SIRPTQGKTLAVMQVSGG 147 (247)
T ss_dssp -------T-TBCSSTTCEEEEEEECSS
T ss_pred -------C-cccccCCCEEEEEEeCCC
Confidence 0 123479999999998543
No 15
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=21.88 E-value=1.2e+02 Score=24.65 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecchh--hhhh----------hhcCCCCCh-hHHHhhhhhccccCCCCCCCcccccccc
Q 007095 350 ALLAQALQNQAKKFKTVVAVVDASCL--AGLR----------KHWNTPLPH-EVEDLVGQLVTSCGDDDENSNLNRKWLL 416 (618)
Q Consensus 350 aLlaQALqsQ~r~fktVVAVVDaS~l--AGiR----------khWnTpvP~-Ev~~l~~~~~~~~d~d~~~~~~dkk~~~ 416 (618)
.-+|++|.+++++.|.-|-++|.... ..+. -||....|+ ++++.++.+. ..+
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~---------------~~l 78 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLA---------------PKL 78 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHG---------------GGC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhh---------------hhc
Confidence 45788888888776655666665432 1122 234444444 3888888871 146
Q ss_pred CCCCeEEEcCc
Q 007095 417 SSKPVVAVGAG 427 (618)
Q Consensus 417 ~~kpvVaVGAG 427 (618)
.+||+.++|.+
T Consensus 79 ~~k~~~~~~t~ 89 (137)
T 2fz5_A 79 KGKKVGLFGSY 89 (137)
T ss_dssp SSCEEEEEEEE
T ss_pred CCCEEEEEEec
Confidence 88999999853
No 16
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=21.75 E-value=56 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=18.2
Q ss_pred cceeEEeecCCCCceEEEeeccc
Q 007095 40 KEFVFAIREPKSQSVIYILCAQN 62 (618)
Q Consensus 40 kqFVfA~R~p~sqsviYiL~aqn 62 (618)
+-|.|+|+|.++++++++---.|
T Consensus 10 rPFlf~I~~~~t~~iLF~G~v~~ 32 (36)
T 4afx_B 10 RPFHFMIYEETSGMLLFLGRVVN 32 (36)
T ss_dssp SCEEEEEEETTTTEEEEEEEESC
T ss_pred CCEEEEEEECCCCcEEEEEEecC
Confidence 45999999999999888754443
No 17
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=21.47 E-value=15 Score=25.66 Aligned_cols=7 Identities=71% Similarity=1.141 Sum_probs=5.5
Q ss_pred HHHhccc
Q 007095 139 REIFGIG 145 (618)
Q Consensus 139 reIFGtg 145 (618)
-||||||
T Consensus 6 yEIFGtG 12 (26)
T 2xpn_B 6 FEIFGTG 12 (26)
T ss_pred EEEecCC
Confidence 3789987
No 18
>2h7o_A Protein kinase YPKA; YOPO, GDI, signaling protein; 2.00A {Yersinia pseudotuberculosis} PDB: 2h7v_C*
Probab=21.04 E-value=1e+02 Score=31.65 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=40.2
Q ss_pred CccccCCCCCCCCcchhhhhHHHHHHH------hhccCCCchhHHHHHHHHHHHHh----hcCcccchhhhhchh
Q 007095 241 SKEVQPRSSYHVPSFAQSVYPLLVDLH------DVFIDLPSITRALAFAQKMFYDV----NRGEAVDTEVISEVC 305 (618)
Q Consensus 241 ~~E~~p~~~~e~P~FAqsvyPLL~dLh------~iF~dlpsig~AlA~Aqkml~dV----~rGe~vd~~~lsevy 305 (618)
..|.-|--+.++ |-|-.-|-|..+| .-|.||-++-|++.|-+-||.-+ .+|++++.|+++..|
T Consensus 94 s~E~S~~ls~~i--~~q~aEP~Lk~i~~~l~~~~~~~di~tl~r~~q~lET~lsvl~~ss~q~~~~s~evy~~L~ 166 (303)
T 2h7o_A 94 STEVSPYHRSNF--MLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVTLSQQGQPVSSETYGFLN 166 (303)
T ss_dssp ----------CH--HHHTHHHHHHHHHGGGGSCCCGGGHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred CCCcChHHhHHH--HHHhccHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhccCccCCCCCHHHHHHHH
Confidence 445555444455 8888899999999 56889989999999999888765 688999876555444
No 19
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=20.07 E-value=81 Score=27.08 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecchh--hhhhh----------hcCCCCChhHHHhhhhhccccCCCCCCCccccccccC
Q 007095 350 ALLAQALQNQAKKFKTVVAVVDASCL--AGLRK----------HWNTPLPHEVEDLVGQLVTSCGDDDENSNLNRKWLLS 417 (618)
Q Consensus 350 aLlaQALqsQ~r~fktVVAVVDaS~l--AGiRk----------hWnTpvP~Ev~~l~~~~~~~~d~d~~~~~~dkk~~~~ 417 (618)
-.+|++|.+++.+- ..|-++|.... ..+.+ ||.-.+|+.+++..+.+ . +.-+.
T Consensus 15 ~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l---------~-----~~~l~ 79 (169)
T 1czn_A 15 QTIAESIQQEFGGE-SIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDL---------D-----SVNFQ 79 (169)
T ss_dssp HHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGG---------G-----GSCCT
T ss_pred HHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHh---------h-----hhccC
Confidence 35788888888653 23556665432 22222 34466788787777765 1 12367
Q ss_pred CCCeEEEcCcce
Q 007095 418 SKPVVAVGAGAS 429 (618)
Q Consensus 418 ~kpvVaVGAGAt 429 (618)
+|++.++|.|..
T Consensus 80 gk~~~~f~t~~~ 91 (169)
T 1czn_A 80 GKKVAYFGAGDQ 91 (169)
T ss_dssp TCEEEEEEECCT
T ss_pred CCEEEEEEECCC
Confidence 899999998654
No 20
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=20.04 E-value=88 Score=22.26 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=19.2
Q ss_pred cceeEEeecCCCCceEEEeecccc
Q 007095 40 KEFVFAIREPKSQSVIYILCAQNL 63 (618)
Q Consensus 40 kqFVfA~R~p~sqsviYiL~aqnL 63 (618)
+-|.|+|+|.++++++++--..|-
T Consensus 10 rPFlf~I~~~~t~~iLF~G~v~~P 33 (36)
T 3ndd_B 10 KPFVFLMIEQNTKSPLFMGKVVNP 33 (36)
T ss_dssp SCEEEEEEETTTCCEEEEEEESSC
T ss_pred CCEEEEEEECCCCcEEEEEEecCC
Confidence 459999999999999887655443
Done!