BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007096
         (618 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
           Neurolysin Specificity In Neurotensin Cleavage Site
          Length = 674

 Score = 32.7 bits (73), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 23/95 (24%)

Query: 341 DRTKKIGIWRIVVIHNPPYSDARRTGKIPKLLAH---------------RLFPNARFSLW 385
           D +++I I  +V     P +DA      P LL H               +L   A F+++
Sbjct: 423 DGSRQIAIAAMVANFTKPTADA------PSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMF 476

Query: 386 IDGKLE--LVVDPYQILERHLWRKNATFAISRHYK 418
               +E   V  P Q+LE  +W +     +SRHY+
Sbjct: 477 SGTHVETDFVEAPSQMLENWVWEQEPLLRMSRHYR 511


>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
          Length = 674

 Score = 32.7 bits (73), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 23/95 (24%)

Query: 341 DRTKKIGIWRIVVIHNPPYSDARRTGKIPKLLAH---------------RLFPNARFSLW 385
           D +++I I  +V     P +DA      P LL H               +L   A F+++
Sbjct: 423 DGSRQIAIAAMVANFTKPTADA------PSLLQHDEVETYFHEFGHVMHQLCSQAEFAMF 476

Query: 386 IDGKLE--LVVDPYQILERHLWRKNATFAISRHYK 418
               +E   V  P Q+LE  +W +     +SRHY+
Sbjct: 477 SGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYR 511


>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
           Diphtheriae, Northeast Structural Genomics Consortium
           Target Cdr78
 pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
           Diphtheriae, Northeast Structural Genomics Consortium
           Target Cdr78
 pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
           Diphtheriae, Northeast Structural Genomics Consortium
           Target Cdr78
 pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
           Diphtheriae, Northeast Structural Genomics Consortium
           Target Cdr78
          Length = 361

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 115 EQTKKMYNETSFNNIESQNSIANSVEAMDKMVSVRPIESTVFP--PPPPSYFLGYTLPPG 172
           EQT+ +Y +   + +  +NS+A +V A+   V +R  ES +     P  S   G  + PG
Sbjct: 52  EQTESIYLDGLNDEVAERNSLAKTVYAI--FVPLREGESQIAAEITPXRSERFGVDVLPG 109

Query: 173 HPCNS 177
           HP  S
Sbjct: 110 HPALS 114


>pdb|1BG5|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of
           Alpha-Na, K-Atpase As A Fusion Protein With Glutathione
           S-Transferase
          Length = 254

 Score = 29.3 bits (64), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 212 VPSFSPVLKNLTYITEPVLNREAEFGGSDFGGYPPLAQRNNSY 254
           +P     LK+  YI  P+   +A FGG D      L  R +SY
Sbjct: 186 IPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKSDLVPRGSSY 228


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,343,052
Number of Sequences: 62578
Number of extensions: 732804
Number of successful extensions: 1350
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 6
length of query: 618
length of database: 14,973,337
effective HSP length: 105
effective length of query: 513
effective length of database: 8,402,647
effective search space: 4310557911
effective search space used: 4310557911
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)