BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007096
         (618 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8ZW25|PRMA_DESOH Ribosomal protein L11 methyltransferase OS=Desulfococcus oleovorans
           (strain DSM 6200 / Hxd3) GN=prmA PE=3 SV=1
          Length = 302

 Score = 38.1 bits (87), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 493 RFTSRDQISFSTVRDKLWAKTNWTVNMFLDCERRNFVVQKYHRDHILPNPPPVPVDLEPP 552
           R   R  + F+   D+ WA   W  + F+    RN VV+   RDH+ P P  V +DL+ P
Sbjct: 80  RHPVRCTLEFTPCDDQDWANA-WKDHFFVQKIGRNIVVRPTWRDHV-PEPGEVVIDLD-P 136

Query: 553 PLSLAVEAPPPPALVSDLPKK-------FPLETTGERVVRVPTRKVSPR 594
            ++      P  A+  ++ +K       F    TG  ++ +  +K+  +
Sbjct: 137 GMAFGTGTHPTTAMCLEMVEKHLAPGTAFLDVGTGSGILMIAAQKLGAK 185


>sp|Q24UT2|SYA_DESHY Alanine--tRNA ligase OS=Desulfitobacterium hafniense (strain Y51)
           GN=alaS PE=3 SV=1
          Length = 875

 Score = 35.0 bits (79), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 514 NWTVNMFLDCERRNFVVQKYHRDHILPNPPPVPVDLEPPPLSLAVEAPPPPALVSDLPKK 573
           N   +MFL     NF   K HR  ILP+   +P D     L++A   P  P  +  +   
Sbjct: 5   NQLRDMFL-----NFFASKGHR--ILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPP 57

Query: 574 FPLETTGERVVRVPTRKV 591
           FP  TT ++ VR P  +V
Sbjct: 58  FPRATTSQKCVRTPDLEV 75


>sp|Q9Y2G9|SBNO2_HUMAN Protein strawberry notch homolog 2 OS=Homo sapiens GN=SBNO2 PE=2
           SV=3
          Length = 1366

 Score = 34.7 bits (78), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 20/92 (21%)

Query: 145 MVSVRPIESTVFPP--PPPSYFLGYTLPPGHPC-------NSFTLPPPPADKKRT----- 190
           M++V P     +P   PPP+  L Y+ PP           N+F+LPP PA    +     
Sbjct: 1   MLAVGPAMDRDYPQHEPPPAGSLLYSPPPLQSAMLHCPYWNTFSLPPYPAFSSDSRPFMS 60

Query: 191 -----GPRPCP-VCYLPVEEVIALMPKVPSFS 216
                G +PCP   Y PV    +L PK   F+
Sbjct: 61  SASFLGSQPCPDTSYAPVATASSLPPKTCDFA 92


>sp|Q10327|YD72_SCHPO Uncharacterized protein C32A11.02c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC32A11.02c PE=4 SV=1
          Length = 851

 Score = 34.3 bits (77), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 25/112 (22%)

Query: 196 PVCYLPVEEVIALMPKVPSFSPVLKNLTYITEPVLNREAEFGGSDFGGYPPLAQRNNSYD 255
           P+  L +E+        P F  VL+NL   T  VL + AEF  ++F  + P A   N   
Sbjct: 435 PIPRLEIEQ--------PDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYA---NITS 483

Query: 256 IRESM------SVHCG------FVKGKPGRGTGYDLDEEDILDMEQCHGIVV 295
            RE+M      ++ C       ++K K G  T  DL   D+L  +Q  G+VV
Sbjct: 484 FRENMINVHLSNIQCDLKDVNYYIKRKQGFPTFTDLGVVDLLIGKQ--GMVV 533


>sp|A5UKU6|SYA_METS3 Alanine--tRNA ligase OS=Methanobrevibacter smithii (strain PS /
           ATCC 35061 / DSM 861) GN=alaS PE=3 SV=1
          Length = 897

 Score = 34.3 bits (77), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 392 LVVDPYQILERHLWRKNATFAISR------HYKRFDVLVEAEANKAAKKYDNASIDFQIE 445
           +V    +IL  H+W+  A   +SR      HYKR       E  K A +Y   +I+  I+
Sbjct: 597 IVAAARKILGEHIWQAGAQKGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIK 656

Query: 446 FY 447
           FY
Sbjct: 657 FY 658


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,650,649
Number of Sequences: 539616
Number of extensions: 11918277
Number of successful extensions: 45016
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 41301
Number of HSP's gapped (non-prelim): 3484
length of query: 618
length of database: 191,569,459
effective HSP length: 124
effective length of query: 494
effective length of database: 124,657,075
effective search space: 61580595050
effective search space used: 61580595050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)