Query 007096
Match_columns 618
No_of_seqs 120 out of 137
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 18:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 1E-113 3E-118 874.9 28.4 304 221-534 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 94.9 0.048 1E-06 53.5 5.7 97 318-417 29-131 (248)
3 cd00505 Glyco_transf_8 Members 92.6 0.73 1.6E-05 45.7 9.2 160 318-509 29-200 (246)
4 PF01501 Glyco_transf_8: Glyco 90.0 0.54 1.2E-05 44.6 5.2 116 366-509 85-205 (250)
5 cd06429 GT8_like_1 GT8_like_1 67.2 9 0.00019 39.5 5.0 96 318-416 28-148 (257)
6 PF03407 Nucleotid_trans: Nucl 66.7 13 0.00029 35.7 5.8 90 379-510 66-156 (212)
7 cd06432 GT8_HUGT1_C_like The C 53.2 14 0.00029 37.8 3.4 96 318-416 29-130 (248)
8 cd02537 GT8_Glycogenin Glycoge 52.3 83 0.0018 31.6 8.7 53 349-402 53-112 (240)
9 PLN02742 Probable galacturonos 46.2 30 0.00064 39.9 5.0 95 318-415 255-386 (534)
10 PF05637 Glyco_transf_34: gala 45.4 15 0.00032 37.4 2.3 44 464-508 143-192 (239)
11 PLN03181 glycosyltransferase; 43.7 26 0.00056 39.5 4.0 122 361-525 176-322 (453)
12 PLN02718 Probable galacturonos 42.1 62 0.0013 37.9 6.7 96 318-416 341-452 (603)
13 cd06430 GT8_like_2 GT8_like_2 41.4 40 0.00087 36.2 4.8 34 370-403 87-120 (304)
14 PF03452 Anp1: Anp1; InterPro 40.6 25 0.00054 37.2 3.2 47 370-419 133-179 (269)
15 cd06431 GT8_LARGE_C LARGE cata 36.8 36 0.00077 35.6 3.5 99 317-416 28-135 (280)
16 PF15471 TMEM171: Transmembran 33.8 1.1E+02 0.0023 33.2 6.4 27 149-175 212-238 (319)
17 PF03314 DUF273: Protein of un 31.3 37 0.00081 35.2 2.6 60 373-438 35-94 (222)
18 PRK15171 lipopolysaccharide 1, 28.4 65 0.0014 34.4 3.9 94 318-414 54-153 (334)
19 PF06716 DUF1201: Protein of u 28.0 31 0.00067 28.4 1.1 17 64-80 16-32 (54)
20 PLN02769 Probable galacturonos 25.0 1.3E+02 0.0029 35.6 5.8 49 365-415 431-485 (629)
21 cd02515 Glyco_transf_6 Glycosy 24.0 58 0.0013 34.7 2.5 113 276-397 19-141 (271)
22 PF07172 GRP: Glycine rich pro 21.1 67 0.0015 29.1 2.0 6 63-68 6-11 (95)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=1.4e-113 Score=874.90 Aligned_cols=304 Identities=59% Similarity=1.005 Sum_probs=297.1
Q ss_pred ceeeeccCCcccccCCCCCCCCCCCChhhhccccCCCCCeeeccccccCCCCCCCCCcCCHhhHHHHhccCcEEEEEeee
Q 007096 221 NLTYITEPVLNREAEFGGSDFGGYPPLAQRNNSYDIRESMSVHCGFVKGKPGRGTGYDLDEEDILDMEQCHGIVVVSAIF 300 (618)
Q Consensus 221 ~l~Yi~~~~~~~~~~~~~~~FgG~~sl~~R~~sF~~~~s~~vhCGF~~g~pg~~~Gfdi~e~D~~~m~~C~kVVVYTAIF 300 (618)
||+||.+|+++. +.++++|||||||+||++||+++++|+|||||++ ||||||+|.|+.||++|+ ||||||||
T Consensus 1 nl~y~~~~~~~~--~~~~~~f~g~~s~~~R~~sf~~~~~~~v~Cgf~~-----~~gf~i~~~d~~~m~~c~-vvV~saIF 72 (305)
T PF04765_consen 1 NLTYIEEENKPE--SGRGPSFGGNQSLEERESSFDIQEDMTVHCGFVK-----NTGFDISESDRRYMEKCR-VVVYSAIF 72 (305)
T ss_pred CCcccccccccc--cCCCCCcCCcCCHHHHHHhcCCCCCceecccccc-----CCCCCCCHHHHHHHhcCC-EEEEEEec
Confidence 799999998766 8889999999999999999999999999999999 789999999999999999 99999999
Q ss_pred CCCcccCCCCCCCccCCCCeeEEEEechhhHHHHhhccCC-CCCCcccceEEEEcCCCCCCCccccCCcccccccccCCC
Q 007096 301 GAFDDINQPSNISEYSRKTVCFVMFVDEETEAYLKANSGL-DRTKKIGIWRIVVIHNPPYSDARRTGKIPKLLAHRLFPN 379 (618)
Q Consensus 301 GnYD~L~qP~~Is~~s~~~VcFicFTDe~tl~~l~~~~~~-~~~~k~G~WRIV~V~nlpy~D~RRngRipKiLpHrLFPn 379 (618)
|+||+|+||++|++++.++|||+||||+.|+++|++++.+ ++++++|+||||+|+++||+|+|||||+||||||+||||
T Consensus 73 G~yD~l~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~d~rr~~r~~K~lpHrlfp~ 152 (305)
T PF04765_consen 73 GNYDKLRQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYDDPRRNGRIPKLLPHRLFPN 152 (305)
T ss_pred CCCccccCchhhCHHHhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCcchhhcCcccceeccccCCC
Confidence 9999999999999999999999999999999999998865 888999999999999999999999999999999999999
Q ss_pred CCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCcccCC
Q 007096 380 ARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFYKNEGLTPYSEAK 459 (618)
Q Consensus 380 yrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAckr~~Kyd~~~I~~Qme~Yk~eGLp~~s~~k 459 (618)
|+|||||||||+|++||++||+++||+++++|||++||.|+||||||+||++++||+++.|++||++|+++|||+|+.+|
T Consensus 153 y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~~eGlp~~s~~k 232 (305)
T PF04765_consen 153 YDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYKQEGLPPWSPAK 232 (305)
T ss_pred CceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceEEEcccCCchhHHHHHHHHHHhcCCCCCCchHHHHHhhhccCCCccccccccchhhhhhhhccc
Q 007096 460 LPITSDVPEGCVIIREHVPISNLFVCLWFNEVDRFTSRDQISFSTVRDKLWAKTNWTVNMFLDCERRNFVVQKYH 534 (618)
Q Consensus 460 lP~~sgLpEg~VIIReHtp~snlFmclWFNEV~rfS~RDQLSF~YVl~Kl~~~~~~~lnMF~dcerr~~v~~~~H 534 (618)
+|+.+|||||+||||+|++++|+|||+|||||++||+||||||+||+||++. +|++|||+||||+++|++++|
T Consensus 233 ~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~--~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 233 LPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGP--KFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred cccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCC--cccchhhhHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999997 699999999999999999998
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=94.87 E-value=0.048 Score=53.53 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCCCcc-ccCC-----cccccccccCCCCCEEEEEeCceE
Q 007096 318 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYSDAR-RTGK-----IPKLLAHRLFPNARFSLWIDGKLE 391 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~nlpy~D~R-RngR-----ipKiLpHrLFPnyrYSIWIDgKIq 391 (618)
..++|++++|+.+...++.-..+.... ....+++.++...+.+.. ...+ +.|++...+||+|+.-||||+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~l 107 (248)
T cd04194 29 RDYDFYILNDDISEENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADII 107 (248)
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEE
Confidence 478999999875543322111110000 122344545432121111 1222 348899999999999999999999
Q ss_pred EecCHHHHHHHHhhccCCcEEEecCC
Q 007096 392 LVVDPYQILERHLWRKNATFAISRHY 417 (618)
Q Consensus 392 L~~DP~~LLe~~Lwr~n~~fAIskHp 417 (618)
+.+|+..|.+.-+ ++..+|+..|.
T Consensus 108 v~~di~~L~~~~~--~~~~~aa~~d~ 131 (248)
T cd04194 108 VLGDLSELFDIDL--GDNLLAAVRDP 131 (248)
T ss_pred ecCCHHHHhcCCc--CCCEEEEEecc
Confidence 9999999987544 46678887764
No 3
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=92.57 E-value=0.73 Score=45.66 Aligned_cols=160 Identities=13% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCC------CccccCCcccccccccCCCCCEEEEEeCceE
Q 007096 318 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYS------DARRTGKIPKLLAHRLFPNARFSLWIDGKLE 391 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~nlpy~------D~RRngRipKiLpHrLFPnyrYSIWIDgKIq 391 (618)
+.+.|+.++|.......+.-..+-.. .....+++.++...+. ......-+.|++..+|||+++--||+|+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~i 107 (246)
T cd00505 29 KPLRFHVLTNPLSDTFKAALDNLRKL-YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADIL 107 (246)
T ss_pred CCeEEEEEEccccHHHHHHHHHHHhc-cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCee
Confidence 47899999998654322211111000 0123455555432221 2223445789999999999999999999999
Q ss_pred EecCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHH-HHCCCCCcccCCCCCCCCCCcce
Q 007096 392 LVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFY-KNEGLTPYSEAKLPITSDVPEGC 470 (618)
Q Consensus 392 L~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAckr~~Kyd~~~I~~Qme~Y-k~eGLp~~s~~klP~~sgLpEg~ 470 (618)
+..|+..|.+--+ ++..+|+..-.. .. ... +.| +..|++. ....+-++
T Consensus 108 v~~di~~L~~~~l--~~~~~aav~d~~----~~------~~~-----------~~~~~~~~~~~--------~~~yfNsG 156 (246)
T cd00505 108 VLTDIDELWDTPL--GGQELAAAPDPG----DR------REG-----------KYYRQKRSHLA--------GPDYFNSG 156 (246)
T ss_pred eccCHHHHhhccC--CCCeEEEccCch----hh------hcc-----------chhhcccCCCC--------CCCceeee
Confidence 9999999998666 466788764321 00 000 111 1223321 22345567
Q ss_pred EEEcccCC-----chhHHHHHHHHHHhcCCCCCCchHHHHHhhh
Q 007096 471 VIIREHVP-----ISNLFVCLWFNEVDRFTSRDQISFSTVRDKL 509 (618)
Q Consensus 471 VIIReHtp-----~snlFmclWFNEV~rfS~RDQLSF~YVl~Kl 509 (618)
|++=+-.. +.......|.+...+..--||=.++.++...
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcC
Confidence 77732221 2222234455556678889999999998874
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=89.99 E-value=0.54 Score=44.56 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCcccccccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHH
Q 007096 366 GKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIE 445 (618)
Q Consensus 366 gRipKiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAckr~~Kyd~~~I~~Qme 445 (618)
.-+.|++.+.+|++|+--||+|+-+.+.+|+..|.+.-+ ++..+|+... ....
T Consensus 85 ~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~-------------------------~~~~ 137 (250)
T PF01501_consen 85 ATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED-------------------------ESFD 137 (250)
T ss_dssp GGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-----------------------------H
T ss_pred HHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc-------------------------chhh
Confidence 345699999999999999999999999999999998666 3566777665 0001
Q ss_pred HHHHCCCCCcccCCCCCCCCCCcceEEEcccCCch-hHHHHHHHHHHh----cCCCCCCchHHHHHhhh
Q 007096 446 FYKNEGLTPYSEAKLPITSDVPEGCVIIREHVPIS-NLFVCLWFNEVD----RFTSRDQISFSTVRDKL 509 (618)
Q Consensus 446 ~Yk~eGLp~~s~~klP~~sgLpEg~VIIReHtp~s-nlFmclWFNEV~----rfS~RDQLSF~YVl~Kl 509 (618)
.+ ..+-........+...+.+-++|++=+-.... +.+...+.+.++ +..-.||=-|++++...
T Consensus 138 ~~-~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~~ 205 (250)
T PF01501_consen 138 NF-PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFYGN 205 (250)
T ss_dssp HH-HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHTTG
T ss_pred hh-hhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhccce
Confidence 11 11111112223344566777887774332211 122222222222 24558999999998843
No 5
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=67.19 E-value=9 Score=39.54 Aligned_cols=96 Identities=13% Similarity=0.233 Sum_probs=62.2
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCCC-----c---------------ccc-----CCccccc
Q 007096 318 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYSD-----A---------------RRT-----GKIPKLL 372 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~nlpy~D-----~---------------RRn-----gRipKiL 372 (618)
.+++|..|||..+...++.--.... ...-..+++.+++..+.+ + .+. .-+.+++
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ 106 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDLNP-LKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFARFY 106 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHhcC-CCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHHHHHH
Confidence 5789999999888766554221110 112346666664422211 1 111 1145667
Q ss_pred ccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEecC
Q 007096 373 AHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRH 416 (618)
Q Consensus 373 pHrLFPnyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskH 416 (618)
.-.+||+++--||+|+-+.+.+|..+|.+.=+ ++..+|+...
T Consensus 107 ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 107 LPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 77889999999999999999999999998655 4566766554
No 6
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=66.73 E-value=13 Score=35.72 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=62.6
Q ss_pred CCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCcccC
Q 007096 379 NARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFYKNEGLTPYSEA 458 (618)
Q Consensus 379 nyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAckr~~Kyd~~~I~~Qme~Yk~eGLp~~s~~ 458 (618)
+|+ -+++|+-+.+..||..+++. .+.++.++.-...... .+.
T Consensus 66 G~~-vl~~D~Dvv~~~dp~~~~~~----~~~Di~~~~d~~~~~~-----------------------~~~---------- 107 (212)
T PF03407_consen 66 GYD-VLFSDADVVWLRDPLPYFEN----PDADILFSSDGWDGTN-----------------------SDR---------- 107 (212)
T ss_pred CCc-eEEecCCEEEecCcHHhhcc----CCCceEEecCCCcccc-----------------------hhh----------
Confidence 444 56899999999999999821 4677777652211000 000
Q ss_pred CCCCCCCCCcceEEEcccCCchhHHHHHHHHHHhcCCC-CCCchHHHHHhhhc
Q 007096 459 KLPITSDVPEGCVIIREHVPISNLFVCLWFNEVDRFTS-RDQISFSTVRDKLW 510 (618)
Q Consensus 459 klP~~sgLpEg~VIIReHtp~snlFmclWFNEV~rfS~-RDQLSF~YVl~Kl~ 510 (618)
..+.+-+++++=+.++.+..|+..|-......+. .||-.|..++....
T Consensus 108 ----~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 108 ----NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQA 156 (212)
T ss_pred ----cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcc
Confidence 0112235666666689999999999999999955 79999999999865
No 7
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=53.21 E-value=14 Score=37.79 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCC-CCCCCccccC--C--cccccccccCC-CCCEEEEEeCceE
Q 007096 318 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHN-PPYSDARRTG--K--IPKLLAHRLFP-NARFSLWIDGKLE 391 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~n-lpy~D~RRng--R--ipKiLpHrLFP-nyrYSIWIDgKIq 391 (618)
..+.|++++|..+.+.++.-..+.+. ....=.++.++. ..+....... . +..+++..+|| +++--||+|+-+.
T Consensus 29 ~~~~fyil~~~is~e~~~~l~~~~~~-~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~vdkvLYLD~Dil 107 (248)
T cd06432 29 SPVKFWFIKNFLSPQFKEFLPEMAKE-YGFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQI 107 (248)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHH-hCCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhccCEEEEEcCCce
Confidence 46899999997764433221111000 001113344431 1111111111 1 22366777899 6999999999999
Q ss_pred EecCHHHHHHHHhhccCCcEEEecC
Q 007096 392 LVVDPYQILERHLWRKNATFAISRH 416 (618)
Q Consensus 392 L~~DP~~LLe~~Lwr~n~~fAIskH 416 (618)
+++|...|.+-=+ ++.-+|+..|
T Consensus 108 v~~dL~eL~~~dl--~~~~~Aav~d 130 (248)
T cd06432 108 VRTDLKELMDMDL--KGAPYGYTPF 130 (248)
T ss_pred ecccHHHHHhcCc--CCCeEEEeec
Confidence 9999999887655 4667888765
No 8
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=52.28 E-value=83 Score=31.56 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=38.8
Q ss_pred eEEEEcCCCCCC-------CccccCCcccccccccCCCCCEEEEEeCceEEecCHHHHHHH
Q 007096 349 WRIVVIHNPPYS-------DARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILER 402 (618)
Q Consensus 349 WRIV~V~nlpy~-------D~RRngRipKiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe~ 402 (618)
++++.|+.+... +.+-.+-+.|+..-.+ .+|+--||||+-+.+..|+..|.+.
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~l-~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 53 WIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWNL-TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred CEEEecCccCCcchhhhccchHHHHHhHHHHhccc-cccceEEEEeCCeeEccCHHHHhCC
Confidence 677777654322 2233445778887776 5899999999999999998888764
No 9
>PLN02742 Probable galacturonosyltransferase
Probab=46.21 E-value=30 Score=39.91 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=60.2
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCCCCCCc-------------------------------cccC
Q 007096 318 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNPPYSDA-------------------------------RRTG 366 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~nlpy~D~-------------------------------RRng 366 (618)
.++-|..+||..+...++.==. ....+.-.|+|..+++..+... .|+-
T Consensus 255 ~~~VFHiVTD~~n~~aM~~WF~-~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p 333 (534)
T PLN02742 255 DQLVFHLVTDEVNYGAMQAWFA-MNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNP 333 (534)
T ss_pred CcEEEEEeechhhHHHHHHHHh-hCCCCccEEEEEEeccccccccccchHHHHhhhhhhhhhhcccccccccccccccCc
Confidence 4589999999999887764110 1112234677777765322110 1111
Q ss_pred Ccc------cccccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEec
Q 007096 367 KIP------KLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISR 415 (618)
Q Consensus 367 Rip------KiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIsk 415 (618)
++. +++.-++||+.+--||+|+-+.+.+|+..|.+-=| ++.-+|+..
T Consensus 334 ~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL--~~~viaAVe 386 (534)
T PLN02742 334 KYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDL--HGNVNGAVE 386 (534)
T ss_pred ccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCC--CCCEEEEeC
Confidence 222 22333689999999999999999999999887545 355666653
No 10
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=45.42 E-value=15 Score=37.43 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred CCCCcceEEEcccCCchhHHHHHHHHHHhcCC------CCCCchHHHHHhh
Q 007096 464 SDVPEGCVIIREHVPISNLFVCLWFNEVDRFT------SRDQISFSTVRDK 508 (618)
Q Consensus 464 sgLpEg~VIIReHtp~snlFmclWFNEV~rfS------~RDQLSF~YVl~K 508 (618)
.||=-|.+|||.+ +-+..|.+.|+....+.. ..||=+|.|.+..
T Consensus 143 ~gLNtGsFliRns-~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~ 192 (239)
T PF05637_consen 143 NGLNTGSFLIRNS-PWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQW 192 (239)
T ss_dssp ---------------------------------------------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 5555578899985 656668899996654432 2457777766654
No 11
>PLN03181 glycosyltransferase; Provisional
Probab=43.67 E-value=26 Score=39.52 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=75.3
Q ss_pred CccccCCccccccc----ccCCCCCEEEEEeCceEEecC-HHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccC
Q 007096 361 DARRTGKIPKLLAH----RLFPNARFSLWIDGKLELVVD-PYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKY 435 (618)
Q Consensus 361 D~RRngRipKiLpH----rLFPnyrYSIWIDgKIqL~~D-P~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAckr~~Ky 435 (618)
++.+.+.|-|+..- .-||+++|-.|+|...-|+.- ..+=+++|. +.. +..|..=.-||++
T Consensus 176 d~~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIMNp~~sLPl~ry~---~~N--Lvvhg~p~~vy~~---------- 240 (453)
T PLN03181 176 HPKMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFTDMDFKLPLHRYR---DHN--LVVHGWPKLIYEK---------- 240 (453)
T ss_pred CccCchhhhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhhcC---Ccc--ccccCCccccccc----------
Confidence 33445555555322 339999999999999988632 111133332 122 2233221112221
Q ss_pred ChHHHHHHHHHHHHCCCCCcccCCCCCCCCCCcceEEEcccCCchhHHHHHHHH------------HHh--------cCC
Q 007096 436 DNASIDFQIEFYKNEGLTPYSEAKLPITSDVPEGCVIIREHVPISNLFVCLWFN------------EVD--------RFT 495 (618)
Q Consensus 436 d~~~I~~Qme~Yk~eGLp~~s~~klP~~sgLpEg~VIIReHtp~snlFmclWFN------------EV~--------rfS 495 (618)
.. ..|+=-|.++||+| +-+-.|+..||. ++. -|-
T Consensus 241 -----------------qd--------w~GlN~GsFLIRNc-qWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~e 294 (453)
T PLN03181 241 -----------------RS--------WTALNAGVFLIRNC-QWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPE 294 (453)
T ss_pred -----------------cc--------ccccceeeeEEecC-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCC
Confidence 11 36666789999987 666678999997 221 144
Q ss_pred CCCCchHHHHHhhhccCCCccccccccchh
Q 007096 496 SRDQISFSTVRDKLWAKTNWTVNMFLDCER 525 (618)
Q Consensus 496 ~RDQLSF~YVl~Kl~~~~~~~lnMF~dcer 525 (618)
+=||=++-|.+-+.+. +|.-..|...++
T Consensus 295 aDDQsaLvyll~~~~~--~w~~k~ylE~~y 322 (453)
T PLN03181 295 SDDQSALVYLLYKHKE--KWGDKIYLEGEY 322 (453)
T ss_pred ccchHHHHHHHHhccc--hhccceeeecce
Confidence 5799999999998765 488888887764
No 12
>PLN02718 Probable galacturonosyltransferase
Probab=42.07 E-value=62 Score=37.95 Aligned_cols=96 Identities=13% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCC---C--CCC-----ccccCC------cccccccccCCCCC
Q 007096 318 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNP---P--YSD-----ARRTGK------IPKLLAHRLFPNAR 381 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~nl---p--y~D-----~RRngR------ipKiLpHrLFPnyr 381 (618)
.++.|..|||..+...++.--.+.. .....+.|+.+++. | |.+ +..+.+ +.+++...+||+++
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~~-~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~ 419 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLNP-PGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPGLN 419 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhCC-CCCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHhcccC
Confidence 4689999999988776653211111 11346777776532 1 111 011112 23566667899999
Q ss_pred EEEEEeCceEEecCHHHHHHHHhhccCCcEEEecC
Q 007096 382 FSLWIDGKLELVVDPYQILERHLWRKNATFAISRH 416 (618)
Q Consensus 382 YSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskH 416 (618)
--||+|+-+.+.+|+..|.+-=+ ++.-+|+...
T Consensus 420 KvLYLD~DvVV~~DL~eL~~iDl--~~~v~aaVed 452 (603)
T PLN02718 420 KIVLFDHDVVVQRDLSRLWSLDM--KGKVVGAVET 452 (603)
T ss_pred EEEEEECCEEecCCHHHHhcCCC--CCcEEEEecc
Confidence 99999999999999999987545 3556666643
No 13
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=41.36 E-value=40 Score=36.17 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=31.0
Q ss_pred cccccccCCCCCEEEEEeCceEEecCHHHHHHHH
Q 007096 370 KLLAHRLFPNARFSLWIDGKLELVVDPYQILERH 403 (618)
Q Consensus 370 KiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe~~ 403 (618)
.++...+||+.+--||+|+-+.+.+|+..|.+-|
T Consensus 87 RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~ 120 (304)
T cd06430 87 RLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFL 120 (304)
T ss_pred HHHHHHHhhhhceEEEeccceeecCCHHHHHHHH
Confidence 4888999999999999999999999999999863
No 14
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=40.63 E-value=25 Score=37.20 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=37.8
Q ss_pred cccccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEecCCCC
Q 007096 370 KLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKR 419 (618)
Q Consensus 370 KiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R 419 (618)
-+|.|-|=|..++.+|+|+-|. ..|-.||+.++. .+.+|-+++=..+
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli~-~~kdIivPn~~~~ 179 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIV--ETPPTLIQDLIA-HDKDIIVPNCWRR 179 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcc--cCChHHHHHHHh-CCCCEEccceeec
Confidence 4677778889999999999887 889999999997 5778876554443
No 15
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=36.75 E-value=36 Score=35.58 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCCC--CC---CCccccCCc--ccccccccCC-CCCEEEEEeC
Q 007096 317 RKTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHNP--PY---SDARRTGKI--PKLLAHRLFP-NARFSLWIDG 388 (618)
Q Consensus 317 ~~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~nl--py---~D~RRngRi--pKiLpHrLFP-nyrYSIWIDg 388 (618)
...++|+.|+|+...+.++.-...-+ .....+.++.+++. .+ ......+.+ .+++.+.+|| +++--||+|+
T Consensus 28 ~~~~~fhii~d~~s~~~~~~l~~~~~-~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~ 106 (280)
T cd06431 28 RNPLHFHLITDEIARRILATLFQTWM-VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDT 106 (280)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHhcc-ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEEEcC
Confidence 35699999999876554432211100 11234555655321 11 111222222 4888999999 7999999999
Q ss_pred ceEEecCHHHHHHHHh-hccCCcEEEecC
Q 007096 389 KLELVVDPYQILERHL-WRKNATFAISRH 416 (618)
Q Consensus 389 KIqL~~DP~~LLe~~L-wr~n~~fAIskH 416 (618)
-+.+.+|+.+|.+-+. ..++.-+|+..+
T Consensus 107 Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 107 DITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred CEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 9999999999998741 113445666654
No 16
>PF15471 TMEM171: Transmembrane protein family 171
Probab=33.83 E-value=1.1e+02 Score=33.18 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=20.3
Q ss_pred cccccccCCCCCCcccccCCCCCCCCC
Q 007096 149 RPIESTVFPPPPPSYFLGYTLPPGHPC 175 (618)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (618)
++...|.+|||||.||...+.+..-+|
T Consensus 212 VGDaViiFPPPPPPYF~ess~~a~t~~ 238 (319)
T PF15471_consen 212 VGDAVIIFPPPPPPYFPESSASAVTRS 238 (319)
T ss_pred ecCEEEEcCCccCCCCCCCCcccccCC
Confidence 455678999999999998876643333
No 17
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=31.30 E-value=37 Score=35.23 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=42.8
Q ss_pred ccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChH
Q 007096 373 AHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNA 438 (618)
Q Consensus 373 pHrLFPnyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAckr~~Kyd~~ 438 (618)
.+.++|++++-++||+-|-+ ++|...||.|+. .+.++-.+.-.. -.|+.|..-+-|=+..
T Consensus 35 va~~L~~~~~vlflDaDigV-vNp~~~iEefid-~~~Di~fydR~~----n~Ei~agsYlvkNT~~ 94 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADIGV-VNPNRRIEEFID-EGYDIIFYDRFF----NWEIAAGSYLVKNTEY 94 (222)
T ss_pred HHHHhccCCEEEEEcCCcee-ecCcccHHHhcC-CCCcEEEEeccc----chhhhhccceeeCCHH
Confidence 45778999999999999876 789999999995 677887754332 2566664333333333
No 18
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=28.36 E-value=65 Score=34.41 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=53.5
Q ss_pred CCeeEEEEechhhHHHHhhccCCCCCCcccceEEEEcCC-----CCCCCccccCCcccccccccCC-CCCEEEEEeCceE
Q 007096 318 KTVCFVMFVDEETEAYLKANSGLDRTKKIGIWRIVVIHN-----PPYSDARRTGKIPKLLAHRLFP-NARFSLWIDGKLE 391 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~WRIV~V~n-----lpy~D~RRngRipKiLpHrLFP-nyrYSIWIDgKIq 391 (618)
..++|+.|+|+.+....+.-..+.... ...=+++.|+. +|-.+.-...-+.+++.-.||| +++--||+|+-+.
T Consensus 54 ~~~~f~Il~~~is~e~~~~l~~l~~~~-~~~i~~~~id~~~~~~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Dii 132 (334)
T PRK15171 54 KSLVFHVFTDYISDADKQRFSALAKQY-NTRINIYLINCERLKSLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIA 132 (334)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEeCHHHHhCCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEE
Confidence 357999999977654333211110000 00112223322 1111111223345677778898 6999999999999
Q ss_pred EecCHHHHHHHHhhccCCcEEEe
Q 007096 392 LVVDPYQILERHLWRKNATFAIS 414 (618)
Q Consensus 392 L~~DP~~LLe~~Lwr~n~~fAIs 414 (618)
+.+|...|.+-=+ ++..+|+.
T Consensus 133 v~~dl~~L~~~dl--~~~~~aav 153 (334)
T PRK15171 133 CKGSIKELIDLDF--AENEIAAV 153 (334)
T ss_pred ecCCHHHHHhccC--CCCeEEEE
Confidence 9999999887655 33445554
No 19
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=28.02 E-value=31 Score=28.38 Aligned_cols=17 Identities=29% Similarity=0.905 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhheeee
Q 007096 64 MLLLCVISAAVFLWVLY 80 (618)
Q Consensus 64 ~l~l~~~~~~~f~~~~~ 80 (618)
+++|+++.+++|+|.+|
T Consensus 16 lIC~Fl~~~~~F~~F~~ 32 (54)
T PF06716_consen 16 LICLFLFCLVVFIWFVY 32 (54)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44677788999999988
No 20
>PLN02769 Probable galacturonosyltransferase
Probab=25.04 E-value=1.3e+02 Score=35.56 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=37.5
Q ss_pred cCCccccccc------ccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEec
Q 007096 365 TGKIPKLLAH------RLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISR 415 (618)
Q Consensus 365 ngRipKiLpH------rLFPnyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIsk 415 (618)
+.++..++.| ++||+.+--||+|.-+.+..|...|.+-=| ++.-+|+..
T Consensus 431 ~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL--~gkviAAVe 485 (629)
T PLN02769 431 RTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDM--GGKVNGAVQ 485 (629)
T ss_pred CcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCC--CCCeEEEeh
Confidence 4455555555 689999999999999999999999987545 355677653
No 21
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=23.97 E-value=58 Score=34.73 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=68.0
Q ss_pred CCcCCHhhHHHHhccCcEEEEEeeeCCCcccCCCC-------CCCccCCCCeeEEEEechhhHHHHhhccCCCCCCcccc
Q 007096 276 GYDLDEEDILDMEQCHGIVVVSAIFGAFDDINQPS-------NISEYSRKTVCFVMFVDEETEAYLKANSGLDRTKKIGI 348 (618)
Q Consensus 276 Gfdi~e~D~~~m~~C~kVVVYTAIFGnYD~L~qP~-------~Is~~s~~~VcFicFTDe~tl~~l~~~~~~~~~~k~G~ 348 (618)
-|+.+=-|..|-.+.-+|.+.---+|.|-...+.= .+ ..-+|-|+.|||.... +++- .++... .
T Consensus 19 tf~~~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm---~g~~v~YyVFTD~~~~--~p~v-~lg~~r---~ 89 (271)
T cd02515 19 TFNPDVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFM---VGYRVIYYIFTDKPAA--VPEV-ELGPGR---R 89 (271)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhcc---CCCeeEEEEEeCCccc--Cccc-ccCCCc---e
Confidence 47766677777777776777666778887543321 12 1257899999998753 1110 111111 2
Q ss_pred eEEEEc-CCCCCCC--ccccCCcccccccccCCCCCEEEEEeCceEEecCHH
Q 007096 349 WRIVVI-HNPPYSD--ARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPY 397 (618)
Q Consensus 349 WRIV~V-~nlpy~D--~RRngRipKiLpHrLFPnyrYSIWIDgKIqL~~DP~ 397 (618)
=+++.| ....+.| .+|..-+-+...-+++-++||-...|+++.+..+..
T Consensus 90 ~~V~~v~~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 90 LTVLKIAEESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred eEEEEeccccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 234444 3455544 444423333333346889999999999999997765
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.06 E-value=67 Score=29.08 Aligned_cols=6 Identities=33% Similarity=-0.014 Sum_probs=2.2
Q ss_pred hHHHHH
Q 007096 63 GMLLLC 68 (618)
Q Consensus 63 ~~l~l~ 68 (618)
.|||.+
T Consensus 6 ~llL~l 11 (95)
T PF07172_consen 6 FLLLGL 11 (95)
T ss_pred HHHHHH
Confidence 333333
Done!