Query 007096
Match_columns 618
No_of_seqs 120 out of 137
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g9r_A Glycosyl transferase; a 87.5 1.1 3.9E-05 44.4 7.3 109 368-508 84-198 (311)
2 3tzt_A Glycosyl transferase fa 81.1 0.85 2.9E-05 45.0 3.1 93 318-417 34-136 (276)
3 3u2u_A Glycogenin-1, GN-1, GN1 34.1 71 0.0024 31.6 6.6 52 349-401 57-117 (263)
4 1xv3_A Penaeidin-4D, PEN-4D; a 29.2 56 0.0019 25.6 3.8 17 191-207 19-36 (47)
5 1ll2_A Glycogenin-1; protein-s 25.6 68 0.0023 32.5 4.9 52 349-401 56-116 (333)
6 2jwa_A Receptor tyrosine-prote 24.2 33 0.0011 26.4 1.7 17 62-78 19-35 (44)
7 2bn5_B U1 small nuclear ribonu 13.9 1.3E+02 0.0044 20.6 2.6 13 176-188 8-20 (26)
8 2ki9_A Cannabinoid receptor 2; 12.9 66 0.0023 21.8 1.0 21 60-80 2-22 (33)
9 3j1r_A Archaeal adhesion filam 12.8 75 0.0026 22.2 1.2 16 63-78 8-23 (26)
10 2lxi_A RNA-binding protein 10; 9.7 2.6E+02 0.009 22.2 3.7 53 265-332 4-58 (91)
No 1
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=87.54 E-value=1.1 Score=44.44 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=67.2
Q ss_pred cccccccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCcEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHH
Q 007096 368 IPKLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFY 447 (618)
Q Consensus 368 ipKiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAckr~~Kyd~~~I~~Qme~Y 447 (618)
+.|++...+||+++-.||||+-+.+.+|+..|.+.=+ ++..+|+..+ | +.+ ..+ +..
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~~----------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQE----------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TST----------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hhH----------HHH
Confidence 5577888889999999999999999999999887434 3566777653 2 222 010 112
Q ss_pred HHCCCCCcccCCCCCCCCCCcceEEEcccC-----CchhHHHHHHHHHHh-cCCCCCCchHHHHHhh
Q 007096 448 KNEGLTPYSEAKLPITSDVPEGCVIIREHV-----PISNLFVCLWFNEVD-RFTSRDQISFSTVRDK 508 (618)
Q Consensus 448 k~eGLp~~s~~klP~~sgLpEg~VIIReHt-----p~snlFmclWFNEV~-rfS~RDQLSF~YVl~K 508 (618)
...|+++ ..+.+-++|++=+-. ...+. ...|.++.. ++.--||=-++.++..
T Consensus 141 ~~~~~~~--------~~~yfNsGv~linl~~~r~~~~~~~-~~~~~~~~~~~~~~~DQd~lN~~f~~ 198 (311)
T 1g9r_A 141 QKIGMAD--------GEYYFNAGVLLINLKKWRRHDIFKM-SSEWVEQYKDVMQYQDQDILNGLFKG 198 (311)
T ss_dssp HHTTCCT--------TSCCEEEEEEEECHHHHTTSCHHHH-HHHHHHHHTTTCSSHHHHHHHHHHTT
T ss_pred HhcCCCC--------CCceEeeeeeeeeHHHHHhcchHHH-HHHHHHhccCcCccCCcCHHHHHHcC
Confidence 3446643 234566788763221 22222 223444432 3555799888888764
No 2
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=81.12 E-value=0.85 Score=45.01 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCeeEEEEechhhHHH---HhhccCCCCCCccc-ceEEEEcCCCCCCCccccCC-----cccccccccCC-CCCEEEEEe
Q 007096 318 KTVCFVMFVDEETEAY---LKANSGLDRTKKIG-IWRIVVIHNPPYSDARRTGK-----IPKLLAHRLFP-NARFSLWID 387 (618)
Q Consensus 318 ~~VcFicFTDe~tl~~---l~~~~~~~~~~k~G-~WRIV~V~nlpy~D~RRngR-----ipKiLpHrLFP-nyrYSIWID 387 (618)
..++|++++|+.+... |+.-. . ..| .-+++.++...+.....+.+ +.|++...+|| +++--||+|
T Consensus 34 ~~~~~~il~~~is~~~~~~L~~~~--~---~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD 108 (276)
T 3tzt_A 34 RIFDVYLIHSRISEDKLKDLGEDL--K---KFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLD 108 (276)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHH--H---TTTCEEEEEECC-------------CHHHHHHHTHHHHSCTTCCEEEEEC
T ss_pred CceEEEEEeCCCCHHHHHHHHHHH--H---HcCCEEEEEEeCHHHHhcCccccccCHHHHHHHHHHHHcccccCeEEEEe
Confidence 5789999999765433 22211 0 011 22333333322322111222 56888999999 699999999
Q ss_pred CceEEecCHHHHHHHHhhccCCcEEEecCC
Q 007096 388 GKLELVVDPYQILERHLWRKNATFAISRHY 417 (618)
Q Consensus 388 gKIqL~~DP~~LLe~~Lwr~n~~fAIskHp 417 (618)
+-+.+..|+..|.+.-+ ++..+|+..+.
T Consensus 109 ~D~iv~~di~~L~~~dl--~~~~~aav~d~ 136 (276)
T 3tzt_A 109 PDMLVINPLDDLLRTDI--SDYILAAASHT 136 (276)
T ss_dssp SSEEECSCSHHHHTCCC--TTSSEEEEEC-
T ss_pred CCeeecCCHHHHhhcCC--CCCeEEEEEec
Confidence 99999999999987434 45678887654
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=34.12 E-value=71 Score=31.63 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=38.1
Q ss_pred eEEEEcCCCCCCC---------ccccCCcccccccccCCCCCEEEEEeCceEEecCHHHHHH
Q 007096 349 WRIVVIHNPPYSD---------ARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILE 401 (618)
Q Consensus 349 WRIV~V~nlpy~D---------~RRngRipKiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe 401 (618)
++++.|+.+...+ ++...-+.|++..+|. +|+--||+|+-+.+..|+..|.+
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 6678886553322 2334457799999876 69999999999999999776653
No 4
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=29.17 E-value=56 Score=25.58 Aligned_cols=17 Identities=35% Similarity=0.825 Sum_probs=12.8
Q ss_pred CCCCCcccc-cCHHHHHh
Q 007096 191 GPRPCPVCY-LPVEEVIA 207 (618)
Q Consensus 191 ~~~pc~vc~-lp~e~~~~ 207 (618)
+|--|..|| |+..+|++
T Consensus 19 rp~gC~sC~~is~s~Ar~ 36 (47)
T 1xv3_A 19 RPIGCDVCYGIPSSTARL 36 (47)
T ss_dssp CCSSTTCTTTSCHHHHHH
T ss_pred CCcCCccccccCHHHHHH
Confidence 455599998 68888875
No 5
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=25.60 E-value=68 Score=32.51 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=37.5
Q ss_pred eEEEEcCCCCCCCc---------cccCCcccccccccCCCCCEEEEEeCceEEecCHHHHHH
Q 007096 349 WRIVVIHNPPYSDA---------RRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILE 401 (618)
Q Consensus 349 WRIV~V~nlpy~D~---------RRngRipKiLpHrLFPnyrYSIWIDgKIqL~~DP~~LLe 401 (618)
++|+.|+.+...++ ....-+.|++...| ++|+--||||+-+.+..|+..|.+
T Consensus 56 ~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 56 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp SEEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred CEEEEEeecCCcchhhcccccccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 46777765533221 11233678888885 899999999999999999887764
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.21 E-value=33 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHhhee
Q 007096 62 VGMLLLCVISAAVFLWV 78 (618)
Q Consensus 62 ~~~l~l~~~~~~~f~~~ 78 (618)
||+|+++++++++|+|+
T Consensus 19 VGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 56556666666666664
No 7
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=13.90 E-value=1.3e+02 Score=20.65 Aligned_cols=13 Identities=46% Similarity=1.022 Sum_probs=10.0
Q ss_pred CCccCCCCCCCCC
Q 007096 176 NSFTLPPPPADKK 188 (618)
Q Consensus 176 ~~f~~~~p~~~~~ 188 (618)
+-|++||||.-.+
T Consensus 8 nmfsvppppi~gr 20 (26)
T 2bn5_B 8 NMFSVPPPPILGR 20 (26)
T ss_dssp CCCSCCCCSCCCC
T ss_pred ceecCCCCCcccC
Confidence 6799999986543
No 8
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=12.91 E-value=66 Score=21.81 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=14.8
Q ss_pred chhhHHHHHHHHHHHhheeee
Q 007096 60 KKVGMLLLCVISAAVFLWVLY 80 (618)
Q Consensus 60 ~~~~~l~l~~~~~~~f~~~~~ 80 (618)
+|+.-.+++++++.+.||.=|
T Consensus 2 ~k~~k~l~~vv~~F~icW~P~ 22 (33)
T 2ki9_A 2 VRLAKTLGLVLAVLLICWFPV 22 (33)
T ss_dssp CSSSSHHHHHHHHHTTTSSHH
T ss_pred chhhhhHHHHHHHHHHHHhHH
Confidence 455556667778888899755
No 9
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=12.78 E-value=75 Score=22.17 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHhhee
Q 007096 63 GMLLLCVISAAVFLWV 78 (618)
Q Consensus 63 ~~l~l~~~~~~~f~~~ 78 (618)
.||++..++|+|.+|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555666666554
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=9.67 E-value=2.6e+02 Score=22.25 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=29.8
Q ss_pred ccccCCCCCCCCCcCCHhhHHHH-hccCcEEEEEeeeC-CCcccCCCCCCCccCCCCeeEEEEechhhHH
Q 007096 265 GFVKGKPGRGTGYDLDEEDILDM-EQCHGIVVVSAIFG-AFDDINQPSNISEYSRKTVCFVMFVDEETEA 332 (618)
Q Consensus 265 GF~~g~pg~~~Gfdi~e~D~~~m-~~C~kVVVYTAIFG-nYD~L~qP~~Is~~s~~~VcFicFTDe~tl~ 332 (618)
=|++| .-++++|+|+..+ +++ | .-..++-+..-..-...+++||-|.|.+...
T Consensus 4 i~v~n-----Lp~~~te~~l~~~F~~~----------G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~ 58 (91)
T 2lxi_A 4 VMLRM-----LPQAATEDDIRGQLQSH----------GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDAT 58 (91)
T ss_dssp EEEET-----CCSSCCHHHHHHHHHHH----------TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHH
T ss_pred EEEeC-----CCCCCCHHHHHHHHHHh----------CCEeEEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 35664 3368899888754 443 3 2233332221111123689999999876643
Done!