BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007097
         (618 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2POZ|A Chain A, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
 pdb|2POZ|B Chain B, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
 pdb|2POZ|C Chain C, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
 pdb|2POZ|D Chain D, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
 pdb|2POZ|E Chain E, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
 pdb|2POZ|F Chain F, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
 pdb|2POZ|G Chain G, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
 pdb|2POZ|H Chain H, Crystal Structure Of A Putative Dehydratase From
           Mesorhizobium Loti
          Length = 392

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/23 (69%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 598 GAAIAPAGI--IEQALWKIAGKC 618
           G AI  AGI  IEQALW I GKC
Sbjct: 85  GGAIIFAGISAIEQALWDIKGKC 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,998,401
Number of Sequences: 62578
Number of extensions: 725647
Number of successful extensions: 1805
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1805
Number of HSP's gapped (non-prelim): 4
length of query: 618
length of database: 14,973,337
effective HSP length: 105
effective length of query: 513
effective length of database: 8,402,647
effective search space: 4310557911
effective search space used: 4310557911
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)