Query 007097
Match_columns 618
No_of_seqs 299 out of 1040
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.3 6.3E-13 2.2E-17 113.2 3.6 60 421-480 7-70 (82)
2 1hlo_A Protein (transcription 99.2 1.5E-11 5.3E-16 104.0 4.3 61 419-479 11-76 (80)
3 1nkp_B MAX protein, MYC proto- 99.1 2.1E-11 7E-16 103.9 4.2 60 421-480 3-67 (83)
4 4h10_B Circadian locomoter out 99.1 3.3E-11 1.1E-15 99.9 5.1 55 420-474 8-66 (71)
5 1nkp_A C-MYC, MYC proto-oncoge 99.1 4.2E-11 1.4E-15 103.3 4.5 59 420-478 6-70 (88)
6 1an4_A Protein (upstream stimu 99.1 2.6E-11 9E-16 98.6 2.1 49 421-469 6-63 (65)
7 4ati_A MITF, microphthalmia-as 99.1 1.3E-10 4.6E-15 105.3 5.9 57 421-477 28-91 (118)
8 1a0a_A BHLH, protein (phosphat 99.0 3.9E-11 1.3E-15 97.4 0.3 49 422-470 4-62 (63)
9 1nlw_A MAD protein, MAX dimeri 99.0 4.5E-10 1.5E-14 95.2 5.5 58 422-479 3-66 (80)
10 4h10_A ARYL hydrocarbon recept 99.0 1.4E-10 4.7E-15 96.7 1.9 47 421-467 10-63 (73)
11 3u5v_A Protein MAX, transcript 98.8 7E-10 2.4E-14 93.2 1.3 56 419-474 4-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 98.4 9E-08 3.1E-12 78.7 3.1 52 419-470 11-67 (68)
13 2ql2_B Neurod1, neurogenic dif 98.4 2.9E-07 1E-11 73.9 4.4 49 422-470 4-58 (60)
14 4f3l_A Mclock, circadian locom 98.2 7.1E-07 2.4E-11 94.0 4.5 48 421-468 13-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.0 2.6E-06 9E-11 90.8 4.0 48 420-467 13-67 (387)
16 2lfh_A DNA-binding protein inh 97.8 7.3E-06 2.5E-10 67.0 2.0 41 427-467 21-67 (68)
17 1zpv_A ACT domain protein; str 97.1 0.0045 1.5E-07 51.7 10.7 67 548-616 5-71 (91)
18 4ath_A MITF, microphthalmia-as 96.9 0.00083 2.8E-08 57.0 4.6 43 433-475 8-54 (83)
19 4aya_A DNA-binding protein inh 96.6 0.0017 5.9E-08 56.6 4.8 39 433-471 41-82 (97)
20 1u8s_A Glycine cleavage system 95.7 0.029 1E-06 53.5 8.4 66 548-616 6-71 (192)
21 2ko1_A CTR148A, GTP pyrophosph 95.1 0.048 1.6E-06 44.7 6.9 63 548-612 5-67 (88)
22 2nyi_A Unknown protein; protei 95.0 0.047 1.6E-06 52.6 7.5 64 548-614 5-72 (195)
23 1f5m_A GAF; CGMP binding, sign 94.9 0.015 5E-07 55.4 3.5 73 82-160 92-173 (180)
24 2nyi_A Unknown protein; protei 94.8 0.071 2.4E-06 51.3 8.3 66 548-616 93-164 (195)
25 1u8s_A Glycine cleavage system 94.3 0.15 5E-06 48.6 8.9 67 548-616 93-167 (192)
26 3dba_A CONE CGMP-specific 3',5 93.8 0.025 8.7E-07 52.7 2.5 77 82-160 81-167 (180)
27 3e0y_A Conserved domain protei 93.5 0.064 2.2E-06 47.9 4.5 74 83-158 77-158 (181)
28 2e4s_A CAMP and CAMP-inhibited 92.9 0.09 3.1E-06 47.6 4.6 75 82-158 84-168 (189)
29 2vjw_A GAF-B, GAF family prote 92.8 0.08 2.7E-06 48.2 4.2 49 82-143 54-107 (149)
30 1vhm_A Protein YEBR; structura 92.8 0.059 2E-06 52.2 3.3 74 82-161 87-168 (195)
31 3hcy_A Putative two-component 92.5 0.29 1E-05 42.8 7.4 60 85-145 51-115 (151)
32 3mmh_A FRMSR, methionine-R-sul 92.1 0.067 2.3E-06 50.5 2.8 73 82-160 76-156 (167)
33 3trc_A Phosphoenolpyruvate-pro 91.3 0.095 3.2E-06 46.4 2.7 61 83-145 72-137 (171)
34 2jhe_A Transcription regulator 91.3 0.45 1.5E-05 43.4 7.4 60 550-614 2-61 (190)
35 3ksh_A Putative uncharacterize 90.5 0.16 5.6E-06 47.8 3.6 73 82-160 75-155 (160)
36 2w3g_A DOSS, two component sen 90.5 0.18 6.1E-06 43.5 3.6 72 83-157 56-136 (153)
37 3k2n_A Sigma-54-dependent tran 90.4 0.71 2.4E-05 41.2 7.6 62 83-145 72-142 (177)
38 3n0v_A Formyltetrahydrofolate 90.3 1.5 5.2E-05 44.9 10.9 67 548-616 8-76 (286)
39 3rfb_A Putative uncharacterize 89.8 0.21 7.2E-06 47.6 3.8 75 82-162 76-158 (171)
40 3ci6_A Phosphoenolpyruvate-pro 89.8 0.21 7E-06 43.5 3.4 61 83-145 74-139 (171)
41 3obi_A Formyltetrahydrofolate 89.8 1.9 6.5E-05 44.2 11.2 69 547-616 5-75 (288)
42 3p96_A Phosphoserine phosphata 89.7 0.62 2.1E-05 49.2 7.8 68 547-615 11-78 (415)
43 2qyb_A Membrane protein, putat 89.7 0.48 1.6E-05 42.7 5.9 72 87-160 71-152 (181)
44 3oov_A Methyl-accepting chemot 88.9 0.17 5.8E-06 44.6 2.2 73 86-158 71-154 (169)
45 2zmf_A CAMP and CAMP-inhibited 87.7 0.32 1.1E-05 43.6 3.3 75 82-157 84-167 (189)
46 3lou_A Formyltetrahydrofolate 87.7 2.8 9.6E-05 43.1 10.7 68 547-615 9-80 (292)
47 3o1l_A Formyltetrahydrofolate 87.6 2.4 8.1E-05 43.9 10.1 67 548-615 22-90 (302)
48 2f1f_A Acetolactate synthase i 85.6 1.5 5.2E-05 41.4 6.8 64 549-615 4-69 (164)
49 1y7p_A Hypothetical protein AF 84.4 1.9 6.6E-05 42.7 7.1 62 548-614 4-70 (223)
50 1ykd_A Adenylate cyclase; GAF 83.5 0.97 3.3E-05 46.6 4.9 63 82-144 261-331 (398)
51 3nrb_A Formyltetrahydrofolate 82.6 5.4 0.00018 40.8 9.9 67 547-616 6-74 (287)
52 2pc6_A Probable acetolactate s 82.5 1.9 6.6E-05 40.8 6.1 65 549-616 5-71 (165)
53 3ibj_A CGMP-dependent 3',5'-cy 80.6 0.85 2.9E-05 51.6 3.4 76 82-159 244-330 (691)
54 3p01_A Two-component response 80.1 0.81 2.8E-05 41.8 2.5 69 87-157 94-170 (184)
55 2fgc_A Acetolactate synthase, 77.8 6.3 0.00022 38.3 8.1 64 549-615 30-95 (193)
56 1mc0_A 3',5'-cyclic nucleotide 77.7 1.9 6.4E-05 43.6 4.6 75 82-158 244-329 (368)
57 1mc0_A 3',5'-cyclic nucleotide 77.5 0.81 2.8E-05 46.4 1.8 76 81-159 73-159 (368)
58 1ykd_A Adenylate cyclase; GAF 77.2 0.87 3E-05 46.9 1.9 62 82-143 74-143 (398)
59 3o5y_A Sensor protein; GAF dom 74.1 5.1 0.00017 36.9 6.2 74 83-158 54-135 (165)
60 2k2n_A Sensor protein, SYB-CPH 73.8 5.5 0.00019 35.8 6.2 57 88-145 78-143 (172)
61 2lb5_A Sensor histidine kinase 72.3 6.8 0.00023 36.3 6.6 66 94-160 118-191 (208)
62 3bjc_A CGMP-specific 3',5'-cyc 62.6 1.6 5.4E-05 51.1 0.0 76 82-159 224-312 (878)
63 2f06_A Conserved hypothetical 59.7 33 0.0011 30.4 8.3 56 551-613 75-130 (144)
64 3ibj_A CGMP-dependent 3',5'-cy 58.4 3.4 0.00012 46.6 1.8 70 82-155 75-155 (691)
65 3bjc_A CGMP-specific 3',5'-cyc 56.7 2.3 7.8E-05 49.7 0.0 61 82-144 406-477 (878)
66 2dt9_A Aspartokinase; protein- 53.4 47 0.0016 30.4 8.5 53 543-595 11-67 (167)
67 2re1_A Aspartokinase, alpha an 47.5 83 0.0028 28.8 9.2 65 542-615 97-164 (167)
68 2re1_A Aspartokinase, alpha an 47.3 34 0.0011 31.5 6.4 54 542-595 19-74 (167)
69 2dtj_A Aspartokinase; protein- 41.8 73 0.0025 29.6 7.9 40 543-582 10-50 (178)
70 3ld7_A LIN0431 protein; DUF131 37.6 16 0.00053 31.8 2.2 50 82-133 33-82 (101)
71 3s1t_A Aspartokinase; ACT doma 35.8 1.5E+02 0.0052 27.6 9.1 52 544-595 12-67 (181)
72 2dt9_A Aspartokinase; protein- 35.1 1.5E+02 0.0053 26.9 8.9 66 541-615 88-156 (167)
73 2dtj_A Aspartokinase; protein- 34.5 88 0.003 29.0 7.2 65 542-615 89-156 (178)
74 2f06_A Conserved hypothetical 34.1 1.7E+02 0.0058 25.6 8.8 42 550-591 8-51 (144)
75 2kpp_A LIN0431 protein; soluti 33.7 14 0.00049 32.8 1.4 49 89-140 40-88 (114)
76 3ab4_A Aspartokinase; aspartat 32.7 2.3E+02 0.008 29.8 11.0 54 542-595 258-315 (421)
77 4esn_A Hypothetical protein; p 32.4 18 0.0006 31.8 1.7 47 91-140 45-91 (104)
78 2qmx_A Prephenate dehydratase; 31.4 1.5E+02 0.0051 30.1 8.7 64 551-616 203-267 (283)
79 2lqj_A Mg2+ transport protein; 29.6 1.4E+02 0.0047 25.3 6.9 62 548-614 8-74 (94)
80 3s1t_A Aspartokinase; ACT doma 28.9 1.9E+02 0.0065 26.9 8.5 66 541-615 89-157 (181)
81 2oqq_A Transcription factor HY 28.0 19 0.00067 26.5 1.0 21 460-480 3-23 (42)
82 2er8_A Regulatory protein Leu3 27.8 32 0.0011 27.0 2.4 22 459-480 48-69 (72)
83 3luy_A Probable chorismate mut 24.4 4E+02 0.014 27.6 10.6 58 557-616 217-275 (329)
84 1rwu_A Hypothetical UPF0250 pr 23.9 2E+02 0.0069 25.1 7.0 62 547-611 35-99 (109)
85 1xkm_B Distinctin chain B; por 23.7 66 0.0023 20.8 2.8 20 452-471 3-22 (26)
86 3mwb_A Prephenate dehydratase; 22.9 2.2E+02 0.0075 29.3 8.2 64 550-615 203-268 (313)
87 1hwt_C Protein (heme activator 22.2 47 0.0016 26.5 2.5 21 459-479 57-77 (81)
88 2l5g_A GPS2 protein, G protein 21.9 57 0.002 23.5 2.4 31 448-478 3-33 (38)
89 2qmw_A PDT, prephenate dehydra 20.3 2.5E+02 0.0087 28.1 7.9 65 549-616 187-255 (267)
90 3mah_A Aspartokinase; aspartat 20.0 2.2E+02 0.0076 25.5 6.9 66 541-615 81-149 (157)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.31 E-value=6.3e-13 Score=113.23 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=55.8
Q ss_pred ccchhhHHHHhH---HHhHHHhHhcCCCC-CCccccchHHHHHHHHHHHHHHHHHHHhccccCC
Q 007097 421 CEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSVD 480 (618)
Q Consensus 421 ~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l~ 480 (618)
..+|+.+||+|| |+.|..|++|||.. .|+||++||.+||+||+.|+.+++.|+.++..+.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999 99999999999987 8999999999999999999999999999886554
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.16 E-value=1.5e-11 Score=104.04 Aligned_cols=61 Identities=16% Similarity=0.358 Sum_probs=56.2
Q ss_pred ccccchhhHHHHhH---HHhHHHhHhcCCCC--CCccccchHHHHHHHHHHHHHHHHHHHhccccC
Q 007097 419 NFCEEHISSDKRTE---NEKFMVLRSMVPYI--SEVDKASILSDTIKYLKKLEARVEELESCMYSV 479 (618)
Q Consensus 419 ~~~~~h~~~ER~RR---n~~f~~LrslvP~~--~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l 479 (618)
....+|+..||+|| |+.|..|+++||.. .|++|++||..||+||+.|+.++++|+.+++.+
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999 99999999999976 689999999999999999999999999988754
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.14 E-value=2.1e-11 Score=103.87 Aligned_cols=60 Identities=17% Similarity=0.373 Sum_probs=54.3
Q ss_pred ccchhhHHHHhH---HHhHHHhHhcCCCC--CCccccchHHHHHHHHHHHHHHHHHHHhccccCC
Q 007097 421 CEEHISSDKRTE---NEKFMVLRSMVPYI--SEVDKASILSDTIKYLKKLEARVEELESCMYSVD 480 (618)
Q Consensus 421 ~~~h~~~ER~RR---n~~f~~LrslvP~~--~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l~ 480 (618)
..+|+..||+|| |+.|..|+++||.. .|++|++||..||+||+.|+.++++|+.+++.+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999 99999999999974 8999999999999999999999999998776543
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=99.85 Aligned_cols=55 Identities=27% Similarity=0.324 Sum_probs=50.2
Q ss_pred cccchhhHHHHhH---HHhHHHhHhcCCCC-CCccccchHHHHHHHHHHHHHHHHHHHh
Q 007097 420 FCEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELES 474 (618)
Q Consensus 420 ~~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~ 474 (618)
...+|.++||+|| |+.|..|++|||.. .|+||++||..||+||+.|+.++..|+-
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 3568999999999 99999999999965 6999999999999999999999988763
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.10 E-value=4.2e-11 Score=103.31 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=53.2
Q ss_pred cccchhhHHHHhH---HHhHHHhHhcCCCC---CCccccchHHHHHHHHHHHHHHHHHHHhcccc
Q 007097 420 FCEEHISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVEELESCMYS 478 (618)
Q Consensus 420 ~~~~h~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~ 478 (618)
....|+..||+|| |+.|..||.+||.. .|++|++||..||+||+.|+.+.+.|+..++.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999 99999999999976 59999999999999999999999988776543
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.08 E-value=2.6e-11 Score=98.60 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=44.9
Q ss_pred ccchhhHHHHhH---HHhHHHhHhcCCCCC------CccccchHHHHHHHHHHHHHHH
Q 007097 421 CEEHISSDKRTE---NEKFMVLRSMVPYIS------EVDKASILSDTIKYLKKLEARV 469 (618)
Q Consensus 421 ~~~h~~~ER~RR---n~~f~~LrslvP~~~------k~dKaSIL~daI~Yik~L~~~v 469 (618)
..+|+.+||+|| |+.|..|++|||... |++|++||..||+||+.|+.+.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 458999999999 999999999999864 7899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.05 E-value=1.3e-10 Score=105.31 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=49.4
Q ss_pred ccchhhHHHHhH---HHhHHHhHhcCCCCC----CccccchHHHHHHHHHHHHHHHHHHHhccc
Q 007097 421 CEEHISSDKRTE---NEKFMVLRSMVPYIS----EVDKASILSDTIKYLKKLEARVEELESCMY 477 (618)
Q Consensus 421 ~~~h~~~ER~RR---n~~f~~LrslvP~~~----k~dKaSIL~daI~Yik~L~~~v~~Le~~~~ 477 (618)
..+|+.+||+|| |+.|..|++|||... |++|++||..||+||+.|+.+++.|+....
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558999999999 999999999999864 678999999999999999999999987543
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.01 E-value=3.9e-11 Score=97.35 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=43.7
Q ss_pred cchhhHHHHhH---HHhHHHhHhcCCCC-------CCccccchHHHHHHHHHHHHHHHH
Q 007097 422 EEHISSDKRTE---NEKFMVLRSMVPYI-------SEVDKASILSDTIKYLKKLEARVE 470 (618)
Q Consensus 422 ~~h~~~ER~RR---n~~f~~LrslvP~~-------~k~dKaSIL~daI~Yik~L~~~v~ 470 (618)
.+|.++||+|| |..|..|++|||.. .|..||+||..||+||+.||++++
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999 99999999999964 456699999999999999997653
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.97 E-value=4.5e-10 Score=95.22 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=52.7
Q ss_pred cchhhHHHHhH---HHhHHHhHhcCCCC---CCccccchHHHHHHHHHHHHHHHHHHHhccccC
Q 007097 422 EEHISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVEELESCMYSV 479 (618)
Q Consensus 422 ~~h~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l 479 (618)
..|+..||+|| |..|..||++||.+ .|..|++||..|++||+.|+.+.+.|+.+++.+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999999975 677899999999999999999999999887644
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.96 E-value=1.4e-10 Score=96.73 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=43.4
Q ss_pred ccchhhHHHHhH---HHhHHHhHhcCCCC----CCccccchHHHHHHHHHHHHH
Q 007097 421 CEEHISSDKRTE---NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKLEA 467 (618)
Q Consensus 421 ~~~h~~~ER~RR---n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L~~ 467 (618)
..+|..+||+|| |+.|..|++|||.. +|+||++||..||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 458999999999 99999999999965 799999999999999999863
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.82 E-value=7e-10 Score=93.17 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=45.1
Q ss_pred ccccchhhHHHHhH---HHhHHHhHhcCCCC---CCc-cccchHHHHHHHHHHHHHHHHHHHh
Q 007097 419 NFCEEHISSDKRTE---NEKFMVLRSMVPYI---SEV-DKASILSDTIKYLKKLEARVEELES 474 (618)
Q Consensus 419 ~~~~~h~~~ER~RR---n~~f~~LrslvP~~---~k~-dKaSIL~daI~Yik~L~~~v~~Le~ 474 (618)
+....|+..||+|| |+.|..||.+||.. .|. .|++||..||+||+.|++++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34568999999999 99999999999953 344 4677999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.42 E-value=9e-08 Score=78.71 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=45.8
Q ss_pred ccccchhhHHHHhH---HHhHHHhHhcCCCC--CCccccchHHHHHHHHHHHHHHHH
Q 007097 419 NFCEEHISSDKRTE---NEKFMVLRSMVPYI--SEVDKASILSDTIKYLKKLEARVE 470 (618)
Q Consensus 419 ~~~~~h~~~ER~RR---n~~f~~LrslvP~~--~k~dKaSIL~daI~Yik~L~~~v~ 470 (618)
.....|...||+|+ |+.|..||.+||.. .|+.|+.||..||+||..|+..++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34567999999999 99999999999974 688999999999999999997653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.35 E-value=2.9e-07 Score=73.86 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=43.8
Q ss_pred cchhhHHHHhH---HHhHHHhHhcCCCC---CCccccchHHHHHHHHHHHHHHHH
Q 007097 422 EEHISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVE 470 (618)
Q Consensus 422 ~~h~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~ 470 (618)
..|...||+|+ |+.|..||.+||.. .|..|+.||..||+||..|+..++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999 99999999999975 578899999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.20 E-value=7.1e-07 Score=94.04 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=39.4
Q ss_pred ccchhhHHHHhH---HHhHHHhHhcCC-CCCCccccchHHHHHHHHHHHHHH
Q 007097 421 CEEHISSDKRTE---NEKFMVLRSMVP-YISEVDKASILSDTIKYLKKLEAR 468 (618)
Q Consensus 421 ~~~h~~~ER~RR---n~~f~~LrslvP-~~~k~dKaSIL~daI~Yik~L~~~ 468 (618)
...|..+||+|| |+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 557999999999 999999999999 568999999999999999999754
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.00 E-value=2.6e-06 Score=90.76 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=44.3
Q ss_pred cccchhhHHHHhH---HHhHHHhHhcCC----CCCCccccchHHHHHHHHHHHHH
Q 007097 420 FCEEHISSDKRTE---NEKFMVLRSMVP----YISEVDKASILSDTIKYLKKLEA 467 (618)
Q Consensus 420 ~~~~h~~~ER~RR---n~~f~~LrslvP----~~~k~dKaSIL~daI~Yik~L~~ 467 (618)
...+|..+||+|| |+.|..|++||| ...|+||+|||..||.|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3568999999999 999999999999 56899999999999999999874
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.77 E-value=7.3e-06 Score=67.04 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=35.8
Q ss_pred HHHHhH---HHhHHHhHhcCCCC---CCccccchHHHHHHHHHHHHH
Q 007097 427 SDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEA 467 (618)
Q Consensus 427 ~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~ 467 (618)
.||+|+ |+-|..||.+||.. .|+.|+-||.-||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 366666 99999999999976 677899999999999999984
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.06 E-value=0.0045 Score=51.74 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=58.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
.+.|.|.|+.|+|++.+|..+|.+.+..|.+++....++.+...+...+.+ ......|.++|.++..
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHHH
Confidence 477999999999999999999999999999998887778888888888765 3578999999987653
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=96.89 E-value=0.00083 Score=57.00 Aligned_cols=43 Identities=21% Similarity=0.461 Sum_probs=37.4
Q ss_pred HHhHHHhHhcCCCC----CCccccchHHHHHHHHHHHHHHHHHHHhc
Q 007097 433 NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKLEARVEELESC 475 (618)
Q Consensus 433 n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L~~~v~~Le~~ 475 (618)
|.++..|..|||.. .|..|.+||.-|++||+.|++.++.+...
T Consensus 8 N~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 8 NDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999964 57789999999999999998877766543
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.65 E-value=0.0017 Score=56.65 Aligned_cols=39 Identities=31% Similarity=0.578 Sum_probs=35.0
Q ss_pred HHhHHHhHhcCCCC---CCccccchHHHHHHHHHHHHHHHHH
Q 007097 433 NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVEE 471 (618)
Q Consensus 433 n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~~ 471 (618)
|+-|..||.+||.. .|.-|+-+|.-||+||+.|+.-+++
T Consensus 41 N~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 41 NDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999965 5778888999999999999988764
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.66 E-value=0.029 Score=53.50 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=54.8
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
.+.|.|.|+.|+|++.+|..+|.++|+.|+.++..+..|.+.+.+.+.... .....|+++|.+++.
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999888778877777776432 356788888887653
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.13 E-value=0.048 Score=44.70 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=47.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHH
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALW 612 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~ 612 (618)
.+.|+|.++.|+|+|.+|..+|.+.++.|.++.....++.....|...+.+. ....++.++|.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~--~~l~~l~~~L~ 67 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT--DKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH--HHHHHHHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 4678899999999999999999999999999998876665556666665432 23344544444
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.00 E-value=0.047 Score=52.57 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=51.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccC----HHHHHHHHHHH
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAP----AGIIEQALWKI 614 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s----~~~IkqAL~~v 614 (618)
.+.|.|.|+.|+|++..|..+|.++|+.|+.++..+..|.|.+.+.+.... .. ...|+++|..+
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~---~~~~~~~~~l~~~L~~~ 72 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA---KDGKLIQSALESALPGF 72 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS---SSSHHHHHHHHHHSTTC
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC---ccchhHHHHHHHHHHHH
Confidence 478999999999999999999999999999999987777776677766543 13 56666666543
No 23
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=94.88 E-value=0.015 Score=55.39 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=55.3
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC------ceeEeecccc---ccCChhH
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD------GVIELGVTEL---VPEDPSL 152 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~------GVvELGSte~---v~Ed~~l 152 (618)
..|..|+|+.|+|+.+|+++++.+...-+.. .+...+++.++|||+.. |||++++.+. -.+|..+
T Consensus 92 ~~i~~g~Gi~G~aa~~g~~v~v~Dv~~dp~~------~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~ 165 (180)
T 1f5m_A 92 QMIQFGKGVCGTAASTKETQIVPDVNKYPGH------IACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEF 165 (180)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHH
T ss_pred eeecCCCcchhhhhhcCCEEEeCCcccCccc------cccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHH
Confidence 4688999999999999999999887553322 24557899999999976 9999999764 2345566
Q ss_pred HHHHHHHh
Q 007097 153 LQHIKASL 160 (618)
Q Consensus 153 v~~ik~~F 160 (618)
++.+-...
T Consensus 166 L~~la~~~ 173 (180)
T 1f5m_A 166 LEKLAKLI 173 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.83 E-value=0.071 Score=51.32 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=54.0
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC------ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD------GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~d------g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
.+.|+|.|+.|+|++.+|-.+|-++|+.|+.++..+.. ++|...+...+.. ... ..|+++|..+..
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHH
Confidence 47899999999999999999999999999999887654 7777777766543 245 889999887653
No 25
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.28 E-value=0.15 Score=48.62 Aligned_cols=67 Identities=4% Similarity=0.047 Sum_probs=53.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--------CceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--------DGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~--------dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
.+.|.|.|+.|+|++.+|.++|.+.+++|..+...+. .++|...+...+.. ..+...|+++|..+..
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999887653 35676666665542 4678999999987654
No 26
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=93.78 E-value=0.025 Score=52.65 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=53.9
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHH-hhhcCCcEEEEeeeCC-----ceeEeeccccc----cCChh
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLL-AKSASIQTVICFPHLD-----GVIELGVTELV----PEDPS 151 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~-a~~agIQTvvciP~~~-----GVvELGSte~v----~Ed~~ 151 (618)
..|+.|.|+.|+++.+|+++++.++...+ .|.+..- .....++.++|+|+.. |||.|.+...- .+|..
T Consensus 81 ~~~~~~~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~ 158 (180)
T 3dba_A 81 TVFPLDIGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEE 158 (180)
T ss_dssp CEECTTSSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHH
T ss_pred eeeeCCCCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHH
Confidence 36889999999999999999999875432 3333221 2235679999999954 99999886532 34566
Q ss_pred HHHHHHHHh
Q 007097 152 LLQHIKASL 160 (618)
Q Consensus 152 lv~~ik~~F 160 (618)
+++.+-...
T Consensus 159 lL~~lA~~a 167 (180)
T 3dba_A 159 VFKKYLNFI 167 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555443
No 27
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=93.46 E-value=0.064 Score=47.87 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=48.4
Q ss_pred eecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeeccccc---cCChhHHH
Q 007097 83 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELV---PEDPSLLQ 154 (618)
Q Consensus 83 ~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~v---~Ed~~lv~ 154 (618)
.++.|.|+.|+++.+++++++.+...... |.....+...|++.++|||+.. |||.+++.+.- .+|..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~ 154 (181)
T 3e0y_A 77 RIKIGDGITGSVARDGQYISLSRASQDPR--YRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVS 154 (181)
T ss_dssp EEETTTSSHHHHHHHCCCEEEEEECCCCC--C---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccCCCCeeeehhhcCCeEEecCcccCcc--ccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHH
Confidence 67889999999999999999987654322 2222234467999999999954 89999988632 23444555
Q ss_pred HHHH
Q 007097 155 HIKA 158 (618)
Q Consensus 155 ~ik~ 158 (618)
.+-.
T Consensus 155 ~la~ 158 (181)
T 3e0y_A 155 IIAN 158 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 28
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=92.91 E-value=0.09 Score=47.60 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=53.1
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhH-HHhhhcCCcEEEEeeeCC-----ceeEeeccccc----cCChh
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRS-LLAKSASIQTVICFPHLD-----GVIELGVTELV----PEDPS 151 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~-~~a~~agIQTvvciP~~~-----GVvELGSte~v----~Ed~~ 151 (618)
..|+.|.|+.|+++.+|+++++.+..... .|.+. ......+++.++|+|+.. |||.+++...- .+|..
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~ 161 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADP--RFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDEN 161 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGST--TCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHH
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCc--ccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHH
Confidence 46788999999999999999998765432 23222 223348899999999942 99999987643 34555
Q ss_pred HHHHHHH
Q 007097 152 LLQHIKA 158 (618)
Q Consensus 152 lv~~ik~ 158 (618)
+++.+-.
T Consensus 162 ll~~la~ 168 (189)
T 2e4s_A 162 NFKMFAV 168 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 29
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=92.85 E-value=0.08 Score=48.15 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=41.5
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeecc
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVT 143 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSt 143 (618)
..|+.|.|+.|+++.+|+++|+.+....+ |+..++|||+.. |||.|+..
T Consensus 54 ~~~~~~~g~~g~v~~~g~~v~v~d~~~d~-------------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 54 SAIPVQDNAIGQAFRDRAPRRLDVLDGPG-------------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp CEEESSSSHHHHHHHHCCCEEESCCCTTS-------------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccCCCCCHHHHHhhcCceEEecCcccCC-------------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 46788999999999999999998875322 789999999853 99999886
No 30
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=92.76 E-value=0.059 Score=52.22 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=54.9
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeecccc---ccCChhHH
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTEL---VPEDPSLL 153 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~---v~Ed~~lv 153 (618)
..|+.|+|+.|+|+.+|+++.+.+...-+. +++...+.+.++|||+.. |||++++.+. -.+|..++
T Consensus 87 ~~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~------~~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L 160 (195)
T 1vhm_A 87 VRIPVGRGVCGTAVARNQVQRIEDVHVFDG------HIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 160 (195)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCTTTCTT------CCCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred eEecCCCChHHHHHhcCCEEEECCcccCcc------hhhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHH
Confidence 468899999999999999999998765322 123345789999999842 9999999764 23466677
Q ss_pred HHHHHHhc
Q 007097 154 QHIKASLL 161 (618)
Q Consensus 154 ~~ik~~F~ 161 (618)
+.+-....
T Consensus 161 ~~lA~~ia 168 (195)
T 1vhm_A 161 RQLVAQLE 168 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 31
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=92.55 E-value=0.29 Score=42.82 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=42.0
Q ss_pred cCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeecccc
Q 007097 85 SSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTEL 145 (618)
Q Consensus 85 ~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~ 145 (618)
..|.|..|+++.+|+++++.+....+.. ......+...||+.++|+|+.. |||.+.+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~i~d~~~~~~~-~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~ 115 (151)
T 3hcy_A 51 VDGHSPWITGANEPEPIFVENVDDAEFS-RELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRP 115 (151)
T ss_dssp TCBCCSCC---CCCCCEEESCGGGSCCC-HHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSC
T ss_pred ccCCCchhhhhhcCCcEEEeChhhCccc-chhHHHHHhcCchheEEeceEECCEEEEEEEEecCCC
Confidence 4688999999999999999876554322 1222346678999999999954 8899987654
No 32
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=92.14 E-value=0.067 Score=50.50 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=54.1
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeeccccc---cCChhHH
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELV---PEDPSLL 153 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~v---~Ed~~lv 153 (618)
..|+.|+|+.|+|+.+|+++.+.+...-+.. ++...+++..+|||+.. |||++.+.+.- .+|..++
T Consensus 76 ~~i~~geGi~G~v~~~g~~~~v~Dv~~~p~~------~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L 149 (167)
T 3mmh_A 76 TRIPFGRGVCGQAWAKGGTVVVGDVDAHPDH------IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYL 149 (167)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred eEeccCCChHHHHHhCCcEEEECCcccCcch------hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 3689999999999999999999987653321 23346889999999943 99999996542 3456666
Q ss_pred HHHHHHh
Q 007097 154 QHIKASL 160 (618)
Q Consensus 154 ~~ik~~F 160 (618)
+.+-...
T Consensus 150 ~~lA~~l 156 (167)
T 3mmh_A 150 GELAKIL 156 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 33
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=91.33 E-value=0.095 Score=46.38 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=45.5
Q ss_pred eecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeecccc
Q 007097 83 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTEL 145 (618)
Q Consensus 83 ~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~ 145 (618)
.++.|.|+.|+++.+++++++.+...... |.........|++.++|+|+.. |||.+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~ 137 (171)
T 3trc_A 72 RLKFGEGLIGLVGEREEPINLADAPLHPA--YKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLES 137 (171)
T ss_dssp EEETTCHHHHHHHHHTSCEEESCGGGSTT--CCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSS
T ss_pred eecCCCChhhHHHhcCCeEEeCCCCCCCc--ccccccCCcccccEEEEEeEEECCEEEEEEEEeecCC
Confidence 57889999999999999999987644221 1111122458999999999843 9999998754
No 34
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=91.31 E-value=0.45 Score=43.40 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=42.9
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 007097 550 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKI 614 (618)
Q Consensus 550 lIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 614 (618)
-|+|.|..|.|+|.+|+++|.+.++++..+++... |.+.+. +.....-....+.++|.++
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~i~~~----~~~~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIYLN----FAELEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TEEEEE----ECCCCHHHHHHHHHHHHHS
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CEEEEE----EEeCCHHHHHHHHHHHHcC
Confidence 48899999999999999999999999999999776 653322 2221122344555555543
No 35
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=90.51 E-value=0.16 Score=47.75 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=54.3
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeeccccc---cCChhHH
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELV---PEDPSLL 153 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~v---~Ed~~lv 153 (618)
..++.|+|+.|+|+.+|+++-+.+...-+.. ++...+.+..+|||+.. |||.+.|.+.- .+|..++
T Consensus 75 ~ri~~GeGv~G~aa~~~~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L 148 (160)
T 3ksh_A 75 VHIPIGKGVCGTAVSERRTQVVADVHQFKGH------IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHL 148 (160)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTTC------CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHH
T ss_pred EEeeCCCCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 4689999999999999999999988664432 23345788999999842 99999996542 3556666
Q ss_pred HHHHHHh
Q 007097 154 QHIKASL 160 (618)
Q Consensus 154 ~~ik~~F 160 (618)
+.+-...
T Consensus 149 ~~lA~~l 155 (160)
T 3ksh_A 149 EAIVKII 155 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 36
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=90.47 E-value=0.18 Score=43.55 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=49.8
Q ss_pred eecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeecccc----ccCChhHH
Q 007097 83 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTEL----VPEDPSLL 153 (618)
Q Consensus 83 ~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~----v~Ed~~lv 153 (618)
.|+.+.|+.|+++.+++++++.+...... |... .....|++.++|+|+.. |||.+++... -.+|..++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l 132 (153)
T 2w3g_A 56 HLPKGLGVIGLLIEDPKPLRLDDVSAHPA--SIGF-PPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLV 132 (153)
T ss_dssp SCCCSCTHHHHHHHSCSCEEESSGGGSTT--CCCC-CTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHH
T ss_pred cCCCCCCHHHHHHhcCCcEEecCcccCch--hcCC-CCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHH
Confidence 67889999999999999999987543221 1111 11457899999999843 9999998765 22344455
Q ss_pred HHHH
Q 007097 154 QHIK 157 (618)
Q Consensus 154 ~~ik 157 (618)
+.+-
T Consensus 133 ~~la 136 (153)
T 2w3g_A 133 QALA 136 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 37
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=90.38 E-value=0.71 Score=41.16 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=44.2
Q ss_pred eecCCCCccceeeeCCCcEEEeCCCCCCC-chhh-hH--HHhhhcCCcEEEEeeeCC-----ceeEeecccc
Q 007097 83 VFSSGQGLPGRALANSETIWLCNAQCADS-KVFS-RS--LLAKSASIQTVICFPHLD-----GVIELGVTEL 145 (618)
Q Consensus 83 ~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~-~~~~-R~--~~a~~agIQTvvciP~~~-----GVvELGSte~ 145 (618)
.++.+.|+.|+++.+++++.+ +....+. ..+. +. ......|++.++|+|+.. |||.+++...
T Consensus 72 ~~~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~ 142 (177)
T 3k2n_A 72 TRSIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEE 142 (177)
T ss_dssp EEECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred cCCccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCC
Confidence 456788999999999999998 4444222 1222 22 235678999999999843 9999998654
No 38
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=90.28 E-value=1.5 Score=44.92 Aligned_cols=67 Identities=9% Similarity=-0.043 Sum_probs=54.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
.+.|.+.|+.|+|+..+|-..|-+.|+.++.++.. ...|.|...+.....+ ..+..+++++|..+..
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAERSE 76 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHHHG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 47799999999999999999999999999998877 4567776655555433 4788999999987643
No 39
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=89.84 E-value=0.21 Score=47.56 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=57.2
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeeccccc---cCChhHH
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELV---PEDPSLL 153 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~v---~Ed~~lv 153 (618)
..++.|+|+.|+|+.+|+++-+.++..-+.. ++...+.+..+|||+.. |||.+.|.+.- .+|..++
T Consensus 76 ~ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L 149 (171)
T 3rfb_A 76 IRIALGKGVCGEAAHFQETVIVGDVTTYLNY------ISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYL 149 (171)
T ss_dssp CEEETTSHHHHHHHHTTSCEEESCTTSCSSC------CCSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred eEeeCCcCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 4689999999999999999999988764432 12335678999999842 99999996542 4677788
Q ss_pred HHHHHHhcc
Q 007097 154 QHIKASLLD 162 (618)
Q Consensus 154 ~~ik~~F~~ 162 (618)
+.+-.....
T Consensus 150 ~~lA~~la~ 158 (171)
T 3rfb_A 150 EQFVAILLE 158 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776654
No 40
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=89.79 E-value=0.21 Score=43.54 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=41.9
Q ss_pred eecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeC-----CceeEeecccc
Q 007097 83 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTEL 145 (618)
Q Consensus 83 ~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~-----~GVvELGSte~ 145 (618)
.|+.+.|+.|+++.+++++++.+...... |.........|+..++|+|+. -|||.+++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~ 139 (171)
T 3ci6_A 74 SLQLSEGLVGLVGQREEIVNLENASKHER--FAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQP 139 (171)
T ss_dssp EEETTSHHHHHHHHHTSCEEESSGGGSTT--C---------CCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred eeeccCCeehhhhccCceEEecCCCcCcc--hhccccccccccceEEEEeEEECCEEEEEEEEecCCC
Confidence 56778899999999999999986544322 221222256789999999984 28999998854
No 41
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=89.78 E-value=1.9 Score=44.22 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=55.5
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 547 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 547 ~dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
..+.|.+.|+.|+|+..+|-..|-++|+.++.++.. ...|.|..-+...+.+. ..+..+++++|..+..
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLASLRTGFGVIAA 75 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999988864 45677766666665442 3688999999976643
No 42
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=89.73 E-value=0.62 Score=49.18 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=56.5
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 547 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 547 ~dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
..+.|.|.|+.|+|+...|...|-++|..|+.++-....|.|...+...+... ..+.+.|+++|..+.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-VADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-HHTSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-cCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998888888877777766442 235688999987664
No 43
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=89.68 E-value=0.48 Score=42.67 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=49.3
Q ss_pred CCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeC------CceeEeec-cccc---cCChhHHHHH
Q 007097 87 GQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL------DGVIELGV-TELV---PEDPSLLQHI 156 (618)
Q Consensus 87 G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~------~GVvELGS-te~v---~Ed~~lv~~i 156 (618)
|.|+.|+++.+|+++.+.+...... ...+. .+...|++.++|||+. -|||.+++ ...- .+|..+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~-~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~l 148 (181)
T 2qyb_A 71 IETYIGEAFLSNRLQFVNDTQYMTK-PLTRE-LMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESL 148 (181)
T ss_dssp TTSHHHHHHHHTSCEEESCGGGCSC-HHHHH-HHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHH
T ss_pred CCCchhhhhhcCCCEEecChhcCCc-hhhHH-HHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 7899999999999999987654333 22222 3445799999999983 38999998 5432 2344555555
Q ss_pred HHHh
Q 007097 157 KASL 160 (618)
Q Consensus 157 k~~F 160 (618)
-..+
T Consensus 149 a~~~ 152 (181)
T 2qyb_A 149 AGQL 152 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 44
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=88.91 E-value=0.17 Score=44.61 Aligned_cols=73 Identities=8% Similarity=0.114 Sum_probs=50.1
Q ss_pred CCCCccceeeeCCCcEEEeCCCCCCCchhhhH--HHhhhcCCcEEEEeeeCC-----ceeEeecccc----ccCChhHHH
Q 007097 86 SGQGLPGRALANSETIWLCNAQCADSKVFSRS--LLAKSASIQTVICFPHLD-----GVIELGVTEL----VPEDPSLLQ 154 (618)
Q Consensus 86 ~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~--~~a~~agIQTvvciP~~~-----GVvELGSte~----v~Ed~~lv~ 154 (618)
.|.|+.|+++.+++++|+.+..........+. ......|++.++|+|+.. |||.+++... -.+|..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~ 150 (169)
T 3oov_A 71 QRGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIK 150 (169)
T ss_dssp GGGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHH
T ss_pred cccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHH
Confidence 37899999999999999987655432222221 234568999999999953 9999998643 234555555
Q ss_pred HHHH
Q 007097 155 HIKA 158 (618)
Q Consensus 155 ~ik~ 158 (618)
.+-.
T Consensus 151 ~~a~ 154 (169)
T 3oov_A 151 LFAD 154 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 45
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=87.69 E-value=0.32 Score=43.60 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=51.1
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeecccc----ccCChhH
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTEL----VPEDPSL 152 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~----v~Ed~~l 152 (618)
..|+.|.|+.|+++.+|+++++.+...... ...........+++.++|+|+.. |||.+..... -.+|..|
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~-~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~l 162 (189)
T 2zmf_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPR-FNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENN 162 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTT-CCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHH
T ss_pred cccCCCccHHHHHHHhCCeEEEeccccccc-ccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHH
Confidence 357889999999999999999987654332 22333444567899999999843 7888764432 2244555
Q ss_pred HHHHH
Q 007097 153 LQHIK 157 (618)
Q Consensus 153 v~~ik 157 (618)
++.+-
T Consensus 163 l~~lA 167 (189)
T 2zmf_A 163 FKMFA 167 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 46
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.66 E-value=2.8 Score=43.07 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=52.8
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeC--CCcccCHHHHHHHHHHHh
Q 007097 547 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFR--GAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 547 ~dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS--~~dg~l~~ti~aKv~--~~~~~s~~~IkqAL~~vi 615 (618)
..+.|.+.|+.|+|+..+|-..|-+.|+.|+.++.. ...|.|...+..... +. ..+..+++++|..+.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~-~~~~~~L~~~f~~la 80 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDAD-ALRVDALRREFEPIA 80 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCccc-CCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999998877 456777655544443 21 367899999987654
No 47
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=87.56 E-value=2.4 Score=43.88 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=53.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
.+.|.+.|+.|+|+...|-..|-+.|+.|+.++.... .|.|..-+.....+. ..+..+++++|..+.
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~~~~~L~~~l~~la 90 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PFDLDGFREAFTPIA 90 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SSCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CCCHHHHHHHHHHHH
Confidence 4779999999999999999999999999999887743 577765555444332 368899999997654
No 48
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=85.58 E-value=1.5 Score=41.43 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=50.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-C-CceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 549 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-L-DGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 549 vlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~-~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
..|.|....++|+|.+|..+|.+.|+.+.++.+.. . .++..++|.+. .+ ....+.|.+.|++++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC--HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc--HHHHHHHHHHHcCCC
Confidence 45788899999999999999999999888877753 3 37888888877 22 345677888887765
No 49
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=84.39 E-value=1.9 Score=42.71 Aligned_cols=62 Identities=10% Similarity=-0.010 Sum_probs=45.5
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-----CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 007097 548 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-----DGVLTLALKSTFRGAAIAPAGIIEQALWKI 614 (618)
Q Consensus 548 dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~-----dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 614 (618)
.+.|.|.+..|+|+|.+|+.+|.+.+..+.+++.+.. ++....+ .++.+. ..+.|-+.|+++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~---~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG---DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS---CHHHHHHHHHTC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC---CHHHHHHHHhCC
Confidence 4678999999999999999999999999999998875 4565444 666542 777777777653
No 50
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=83.51 E-value=0.97 Score=46.57 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=44.8
Q ss_pred eeecCCCCccceeeeCCCcEEEe-CCCCCCCchhhhHHHh-hhcCCcEEEEeeeCC------ceeEeeccc
Q 007097 82 FVFSSGQGLPGRALANSETIWLC-NAQCADSKVFSRSLLA-KSASIQTVICFPHLD------GVIELGVTE 144 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~-~~~~~~~~~~~R~~~a-~~agIQTvvciP~~~------GVvELGSte 144 (618)
..++.|.|+.|+++.+|+++++. +..........+.... ..++++.++|||+.+ |||.+.+..
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 261 LRVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEEETTSHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eeccCCCchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 46788999999999999999998 6654332222211211 234578899999974 999998866
No 51
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=82.57 E-value=5.4 Score=40.82 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=49.8
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 547 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 547 ~dvlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
..+.|.+.|+.|+|+..+|-..|-++|+.|+..+.. ...|.|...+...... ....+++++|..+..
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---AGVNDFNSAFGKVVE 74 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC------CHHHHHHHHHHG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---CCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999988764 4567776544444322 334588888876543
No 52
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=82.52 E-value=1.9 Score=40.77 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=50.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cC-CceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 549 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NL-DGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 549 vlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS-~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
-.|.|....++|+|.+|..+|...|+.+.++.+. +. .|+..++|.+. .+ ....+.|...|.+++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d--~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP--DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC--HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc--HHHHHHHHHHhcCCCC
Confidence 4578888999999999999999998888887765 33 48888888886 22 3466778888877653
No 53
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=80.59 E-value=0.85 Score=51.60 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=51.4
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhh-hcCCcEEEEeeeC---C---ceeEeeccccc----cCCh
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAK-SASIQTVICFPHL---D---GVIELGVTELV----PEDP 150 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~-~agIQTvvciP~~---~---GVvELGSte~v----~Ed~ 150 (618)
..++.|.|+.|+++.+|+++++.++...+. |.+..... .++++.++|+|+. + |||.+.+...- .+|.
T Consensus 244 ~~~~~~~gi~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp EEEETTSHHHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTT
T ss_pred eeccCCCCHHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHH
Confidence 467889999999999999999987655332 22222111 2569999999983 2 89999876542 4566
Q ss_pred hHHHHHHHH
Q 007097 151 SLLQHIKAS 159 (618)
Q Consensus 151 ~lv~~ik~~ 159 (618)
.+++.+-..
T Consensus 322 ~ll~~lA~~ 330 (691)
T 3ibj_A 322 DLATAFSIY 330 (691)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 54
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=80.11 E-value=0.81 Score=41.82 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=46.3
Q ss_pred CCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeeccccc---cCChhHHHHHH
Q 007097 87 GQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELV---PEDPSLLQHIK 157 (618)
Q Consensus 87 G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~v---~Ed~~lv~~ik 157 (618)
+.|+.|+++.+|+++.+.+....+ .|.........|++.++|||+.. |||.+++...- .+|..|++.|-
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA 170 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDP--KLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSA 170 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCH--HHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCc--cccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHH
Confidence 467788999999999997754322 33333444567999999999843 99999765432 23444555443
No 55
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=77.79 E-value=6.3 Score=38.26 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=51.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 549 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 549 vlIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS-~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
-.|.|.-+.++|.|.+|...+...|+.|.+..+. +.+ ++..++|++.-. ...++.|.+.|.+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~---e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC---HHHHHHHHHHhcCcC
Confidence 5678888999999999999999999999987775 334 788888888632 356788888888765
No 56
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=77.74 E-value=1.9 Score=43.62 Aligned_cols=75 Identities=20% Similarity=0.300 Sum_probs=50.2
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhh-hcCCcEEEEeeeCC------ceeEeeccccc----cCCh
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAK-SASIQTVICFPHLD------GVIELGVTELV----PEDP 150 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~-~agIQTvvciP~~~------GVvELGSte~v----~Ed~ 150 (618)
..|+.|.|+.|+++.+|+++++.+..... .|.+..... ...++.++|+|+.. |||.+++...- .+|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~ 321 (368)
T 1mc0_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHP--LFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (368)
T ss_dssp CEECTTSHHHHHHHHHCCCEEESCSTTCT--TCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHH
T ss_pred eeecCCCceeeeehhhCCEEEecCcccCc--ccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHH
Confidence 46788899999999999999998775433 232222211 23459999999943 89999987643 2444
Q ss_pred hHHHHHHH
Q 007097 151 SLLQHIKA 158 (618)
Q Consensus 151 ~lv~~ik~ 158 (618)
.|++.+-.
T Consensus 322 ~ll~~la~ 329 (368)
T 1mc0_A 322 DLATAFSI 329 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 57
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=77.46 E-value=0.81 Score=46.36 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred eeeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeC-C------ceeEeecccc----ccCC
Q 007097 81 SFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-D------GVIELGVTEL----VPED 149 (618)
Q Consensus 81 ~~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~-~------GVvELGSte~----v~Ed 149 (618)
...|+.|.|+.|.++.+++++++.+...... .....+..++++.++|+|+. + |||.+.+... -.+|
T Consensus 73 ~~~~~~~~g~~g~~~~~~~~~~i~d~~~~~~---~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d 149 (368)
T 1mc0_A 73 EVSFPLTMGRLGQVVEDKQCIQLKDLTSDDV---QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDED 149 (368)
T ss_dssp EEEEESSSSSHHHHHHHCCCEEGGGSCHHHH---HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHH
T ss_pred ceeeccccCHHHHHHhcCCeEEecccccccc---cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHH
Confidence 3568899999999999999999986543211 11112234678999999983 3 8899876543 2345
Q ss_pred hhHHHHHHHH
Q 007097 150 PSLLQHIKAS 159 (618)
Q Consensus 150 ~~lv~~ik~~ 159 (618)
..+++.+-..
T Consensus 150 ~~~l~~la~~ 159 (368)
T 1mc0_A 150 EHVIQHCFHY 159 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566554443
No 58
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=77.16 E-value=0.87 Score=46.92 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=45.5
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCC-chhhhHHHh-hhcCCcEEEEeeeCC------ceeEeecc
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADS-KVFSRSLLA-KSASIQTVICFPHLD------GVIELGVT 143 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~-~~~~R~~~a-~~agIQTvvciP~~~------GVvELGSt 143 (618)
+.++.|.|+.|.++.+|+++++.+....+. ..|.+.... ..+++++++|+|+.. |||.+...
T Consensus 74 ~~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 74 IRIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp CEEETTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred eecCCCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 367889999999999999999988755322 334333322 246789999999852 78888765
No 59
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=74.12 E-value=5.1 Score=36.93 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=48.7
Q ss_pred eecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeeccccc---cCChhHHH
Q 007097 83 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELV---PEDPSLLQ 154 (618)
Q Consensus 83 ~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~v---~Ed~~lv~ 154 (618)
.++.|.++.|+++.+|+++=+..+ . +...|.....+...|++.++|+|+.. |||-|++...- .+|..+++
T Consensus 54 ~ip~~~s~~~~v~~~~~~~v~~~~-~-~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~ 131 (165)
T 3o5y_A 54 TIPKEQSLYWSALDQRQTIFRSLT-D-TQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLE 131 (165)
T ss_dssp EECSTTCHHHHHHHHTSCEEEESC-C-TTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred ccCCccCHHHHHHHhCCeEEEcCc-c-cccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 455566777899999999854322 2 22344444556788999999999842 89999987542 23444555
Q ss_pred HHHH
Q 007097 155 HIKA 158 (618)
Q Consensus 155 ~ik~ 158 (618)
.+-.
T Consensus 132 ~la~ 135 (165)
T 3o5y_A 132 QLTD 135 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 60
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=73.81 E-value=5.5 Score=35.85 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=40.8
Q ss_pred CCccce----eeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeecccc
Q 007097 88 QGLPGR----ALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTEL 145 (618)
Q Consensus 88 ~GlpG~----a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~ 145 (618)
.|..|. ++.+|+++.+.+....+...+.+..+ ...|++.++|||+.. |||.+.....
T Consensus 78 ~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~-~~~~~~s~l~vPi~~~~~l~G~l~~~~~~~ 143 (172)
T 2k2n_A 78 AQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEP 143 (172)
T ss_dssp GCCCCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHH-HTTTCSEEEECCCSCSSCCCEEEEEEECSC
T ss_pred ccccccccccccccCCceeccchhhcCCCHHHHHHH-HhcCCeEEEEEEEEECCEEEEEEEEEeCCC
Confidence 455554 48999999999876554444434333 468999999999843 9999988743
No 61
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=72.35 E-value=6.8 Score=36.26 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=43.9
Q ss_pred eeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-----ceeEeeccccc---cCChhHHHHHHHHh
Q 007097 94 ALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELV---PEDPSLLQHIKASL 160 (618)
Q Consensus 94 a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-----GVvELGSte~v---~Ed~~lv~~ik~~F 160 (618)
++.+|+++-+.++...+...+.+..+ ...|++.++|||+.. |||.+.+...- .+|..|++.|-..+
T Consensus 118 ~~~~~~~i~i~d~~~~~~~~~~~~~l-~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~ 191 (208)
T 2lb5_A 118 SWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQV 191 (208)
T ss_dssp CCCCCSCCCCCSCSSCCCCHHHHHHH-HHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhccCCHHHHHHH-HhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHH
Confidence 68889998887765544444444444 468999999999842 99999887432 23445555554433
No 62
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=62.64 E-value=1.6 Score=51.09 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHH-HhhhcCCcEEEEeeeCC------ceeEeecccc------ccC
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSL-LAKSASIQTVICFPHLD------GVIELGVTEL------VPE 148 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~-~a~~agIQTvvciP~~~------GVvELGSte~------v~E 148 (618)
..|+.|.|+.|.++.+|+++++.++...+ .|.+.. .....+++.++|+|+.. |||.+.+... -.+
T Consensus 224 ~~~p~~~gi~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~ 301 (878)
T 3bjc_A 224 IRLEWNKGIVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEK 301 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeCCccHHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHH
Confidence 45788999999999999999998765422 222222 12245689999999964 8899886542 234
Q ss_pred ChhHHHHHHHH
Q 007097 149 DPSLLQHIKAS 159 (618)
Q Consensus 149 d~~lv~~ik~~ 159 (618)
|..+++.+-..
T Consensus 302 D~~lL~~lA~~ 312 (878)
T 3bjc_A 302 DEKDFAAYLAF 312 (878)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 63
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=59.70 E-value=33 Score=30.43 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=38.1
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 007097 551 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWK 613 (618)
Q Consensus 551 IeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 613 (618)
|-+.-+.+||.+.+|+++|.+.|+.|...-++..++...+.|+. + ..+...++|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S-----CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C-----CHHHHHHHHHH
Confidence 45556899999999999999999999664443223433344433 2 45667777765
No 64
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=58.41 E-value=3.4 Score=46.61 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=46.8
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCC-------ceeEeecccc----ccCCh
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-------GVIELGVTEL----VPEDP 150 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~-------GVvELGSte~----v~Ed~ 150 (618)
..++.| |+.|+++.+|+|+++.++.... .|.. .......+++++|+|+.. |||.+..... -.+|.
T Consensus 75 ~~~p~~-Gi~g~v~~~~~pv~i~d~~~~~--~~~~-~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~ 150 (691)
T 3ibj_A 75 VSFPLT-GCLGQVVEDKKSIQLKDLTSED--VQQL-QSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDE 150 (691)
T ss_dssp EEEECC-SSSHHHHHHCCCEEGGGSCHHH--HHHH-HHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHH
T ss_pred eecCCc-cHHHHHHHHCCeEEeccchhcc--cccc-ccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHH
Confidence 468899 9999999999999998764321 1111 112235689999999943 7888765422 34555
Q ss_pred hHHHH
Q 007097 151 SLLQH 155 (618)
Q Consensus 151 ~lv~~ 155 (618)
.+++.
T Consensus 151 ~lL~~ 155 (691)
T 3ibj_A 151 HVIQH 155 (691)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 65
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=56.68 E-value=2.3 Score=49.70 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhh-h---cCCcEEEEeeeCC-------ceeEeeccc
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAK-S---ASIQTVICFPHLD-------GVIELGVTE 144 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~-~---agIQTvvciP~~~-------GVvELGSte 144 (618)
..|+.|.|+.|+++.+|+++++.++.... .|.+..... . ++++.++|+|+.. |||+|....
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~ 477 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKM 477 (878)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcC
Confidence 45778899999999999999998764432 233332222 1 5699999999842 788886643
No 66
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=53.43 E-value=47 Score=30.42 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=36.7
Q ss_pred EEeCCeEEEEEEc-cCCCChHHHHHHHHHccCCeEEEEEeecC---CceEEEEEEEE
Q 007097 543 SIQEMDVLIEMRC-PSREYILLDIMDAINNLHLDAYSVVSSNL---DGVLTLALKST 595 (618)
Q Consensus 543 si~e~dvlIeI~C-~~r~glL~~Im~aLe~L~LdV~svqsS~~---dg~l~~ti~aK 595 (618)
....+.++|.|.. +.++|.+.+|+.+|.+.++.|.....+.. +|...++|.+.
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 3455667777765 67899999999999998888876544432 35444555554
No 67
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=47.55 E-value=83 Score=28.77 Aligned_cols=65 Identities=5% Similarity=0.013 Sum_probs=42.9
Q ss_pred EEEeCCeEEEEEEccC---CCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 542 VSIQEMDVLIEMRCPS---REYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 542 Vsi~e~dvlIeI~C~~---r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
|.+..+-+.|.|.... ++|++.+++++|.+.++.|.... +....+.+.|.. -......++|++.+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~-------~d~~~av~~Lh~~f 164 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDE-------KYMELATRVLHKAF 164 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEG-------GGHHHHHHHHHHHT
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeH-------HHHHHHHHHHHHHh
Confidence 4445667788888765 79999999999999999998754 333344444421 12345555666543
No 68
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=47.35 E-value=34 Score=31.50 Aligned_cols=54 Identities=11% Similarity=0.346 Sum_probs=37.1
Q ss_pred EEEeCCeEEEEEEc-cCCCChHHHHHHHHHccCCeEEEEEee-cCCceEEEEEEEE
Q 007097 542 VSIQEMDVLIEMRC-PSREYILLDIMDAINNLHLDAYSVVSS-NLDGVLTLALKST 595 (618)
Q Consensus 542 Vsi~e~dvlIeI~C-~~r~glL~~Im~aLe~L~LdV~svqsS-~~dg~l~~ti~aK 595 (618)
|....+.++|.|.. +.++|.+.+|+.+|.+.++.|.....+ ..+|...++|.+.
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 33456667788874 889999999999999999998875543 2346444444443
No 69
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=41.78 E-value=73 Score=29.56 Aligned_cols=40 Identities=5% Similarity=0.125 Sum_probs=30.1
Q ss_pred EEeCCeEEEEEE-ccCCCChHHHHHHHHHccCCeEEEEEee
Q 007097 543 SIQEMDVLIEMR-CPSREYILLDIMDAINNLHLDAYSVVSS 582 (618)
Q Consensus 543 si~e~dvlIeI~-C~~r~glL~~Im~aLe~L~LdV~svqsS 582 (618)
....+.++|.|. -+.++|.+.+|+++|.+.++.|.....+
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 345667778874 4788999999999999999666554433
No 70
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=37.57 E-value=16 Score=31.83 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=34.9
Q ss_pred eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeee
Q 007097 82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPH 133 (618)
Q Consensus 82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~ 133 (618)
|.|....|..-..-..+.-+|+..++ ++.+.|.+...-...| |||||+|-
T Consensus 33 ~~i~~~~G~~n~ieI~dg~vrv~es~-CPdkiCv~~GwIs~~G-q~IVCLPn 82 (101)
T 3ld7_A 33 FTIKGKGAQYNLMEVDGERIRIKEDN-SPDQVGVKMGWKSKAG-DTIVCLPH 82 (101)
T ss_dssp EEEECSTTCEEEEEEETTEEEEEEEC-CSSCHHHHHCCBCSTT-CEEEETTT
T ss_pred EEEEcCCCCEEEEEEECCEEEEEECC-CCCcccccCCCcCCCC-CEEEEcCC
Confidence 44443344345677788889998764 6778898776665554 89999984
No 71
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=35.79 E-value=1.5e+02 Score=27.62 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=36.0
Q ss_pred EeCCeEEEEEEc-cCCCChHHHHHHHHHccCCeEEEEE-e-ecC-CceEEEEEEEE
Q 007097 544 IQEMDVLIEMRC-PSREYILLDIMDAINNLHLDAYSVV-S-SNL-DGVLTLALKST 595 (618)
Q Consensus 544 i~e~dvlIeI~C-~~r~glL~~Im~aLe~L~LdV~svq-s-S~~-dg~l~~ti~aK 595 (618)
...+.++|.|.. +.++|.+.+|+.+|.+.++.|.... . +.. +|...++|...
T Consensus 12 ~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 12 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 345666676653 6789999999999999988887653 2 321 56655566555
No 72
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.08 E-value=1.5e+02 Score=26.87 Aligned_cols=66 Identities=6% Similarity=0.021 Sum_probs=44.0
Q ss_pred EEEEeCCeEEEEEEccC---CCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 541 KVSIQEMDVLIEMRCPS---REYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 541 eVsi~e~dvlIeI~C~~---r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
.|.+.++-+.|.|.... ++|++.+++++|.+-++.|.-...| +-.+.+.| +. -..+...++|++.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S--e~~is~vv--~~-----~d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS--EVRISVII--PA-----EYAEAALRAVHQAF 156 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC--SSEEEEEE--EG-----GGHHHHHHHHHHHT
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc--CCEEEEEE--eH-----HHHHHHHHHHHHHH
Confidence 55666777888888764 8999999999999999999655433 33333333 32 23456666666554
No 73
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=34.50 E-value=88 Score=29.01 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 542 VSIQEMDVLIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 542 Vsi~e~dvlIeI~C~---~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
|.+.++-++|.|... ..+|++.+++.+|.+.++.|.-...| +-.+.+.| . .-......++|++.+
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS--e~~Is~vV--~-----~~d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS--EIRISVLI--R-----EDDLDAAARALHEQF 156 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TTEEEEEE--E-----GGGHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC--CCeEEEEE--e-----HHHHHHHHHHHHHHH
Confidence 555677788888876 57899999999999999998765533 32333333 2 133456666676654
No 74
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=34.15 E-value=1.7e+02 Score=25.60 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=30.9
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCC-ceEEEE
Q 007097 550 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLD-GVLTLA 591 (618)
Q Consensus 550 lIeI~C~~r~glL~~Im~aLe~L~LdV~svqsS-~~d-g~l~~t 591 (618)
.|.|.-+.++|.|.+|..+|.+.|+.|...... +.+ |++.++
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~ 51 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI 51 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence 456677899999999999999999888876544 334 443333
No 75
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=33.75 E-value=14 Score=32.78 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=34.6
Q ss_pred CccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCCceeEe
Q 007097 89 GLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIEL 140 (618)
Q Consensus 89 GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~GVvEL 140 (618)
|..-..-..+.-+|+..+ .++-+.|.+...-...| |||||+|-. =|||+
T Consensus 40 G~~n~IeIkdg~vrv~es-~CPdkiCv~~GwIsk~G-q~IVCLPnk-vvI~I 88 (114)
T 2kpp_A 40 AQYNLMEVDGERIRIKED-NSPDQVGVKMGWKSKAG-DTIVCLPHK-VFVEI 88 (114)
T ss_dssp TEEEEEEEESSCEEEEEE-CCSSCHHHHHCSBCSTT-CEEEEGGGT-EEEEE
T ss_pred CCEEEEEEECCEEEEEEC-CCCCeehhhcCCcCCCC-CEEEEcCCE-EEEEE
Confidence 433456667778899876 46778999887776677 999999853 24444
No 76
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=32.74 E-value=2.3e+02 Score=29.85 Aligned_cols=54 Identities=9% Similarity=0.209 Sum_probs=39.5
Q ss_pred EEEeCCeEEEEEE-ccCCCChHHHHHHHHHccCCeEEEEEeecC---CceEEEEEEEE
Q 007097 542 VSIQEMDVLIEMR-CPSREYILLDIMDAINNLHLDAYSVVSSNL---DGVLTLALKST 595 (618)
Q Consensus 542 Vsi~e~dvlIeI~-C~~r~glL~~Im~aLe~L~LdV~svqsS~~---dg~l~~ti~aK 595 (618)
|....+.++|.|. .+.++|.+.+|+.+|.+.++.|.....++. +|...++|.+.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 4456778888888 578899999999999999999887643333 45444555544
No 77
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=32.44 E-value=18 Score=31.76 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=35.0
Q ss_pred cceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCCceeEe
Q 007097 91 PGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIEL 140 (618)
Q Consensus 91 pG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~GVvEL 140 (618)
.-..-..+.-+|+..+ .++-+.|.+...-...| ||+||+|-. =|||+
T Consensus 45 ~n~IeI~dg~vrv~es-~CPdkiCv~~GwIs~~G-q~IVCLPnk-lvI~I 91 (104)
T 4esn_A 45 GNRLRIQNGQAKMEWA-DCPDQLCVHQKAISRTG-ESIICLPNQ-VVVSV 91 (104)
T ss_dssp TEEEEEETTEEEEEEE-CCSSCHHHHSCCBCSTT-CEEEETTTT-EEEEE
T ss_pred cEEEEEECCEEEEEEC-CCCCcchhhCCCcCCCC-CEEEEcCCE-EEEEE
Confidence 4566677888999876 47778999888777778 999999852 23555
No 78
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=31.38 E-value=1.5e+02 Score=30.10 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=46.0
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 551 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 551 IeI~C~~r~glL~~Im~aLe~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
|-+.-+.++|.|.++|..+...||..+...|--.. +..-+.|.+.+.|. ..-..+++||..+-.
T Consensus 203 l~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~--~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 203 IVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH--REDQNVHNALENLRE 267 (283)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC--TTSHHHHHHHHHHHT
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC--CCcHHHHHHHHHHHH
Confidence 33444689999999999999999999999986543 33455666666653 233567888876543
No 79
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=29.65 E-value=1.4e+02 Score=25.34 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=43.1
Q ss_pred eEEEEEEccCC--CChHHHHHHHHHccCCeEEEEEeec-CCc-e-EEEEEEEEeCCCcccCHHHHHHHHHHH
Q 007097 548 DVLIEMRCPSR--EYILLDIMDAINNLHLDAYSVVSSN-LDG-V-LTLALKSTFRGAAIAPAGIIEQALWKI 614 (618)
Q Consensus 548 dvlIeI~C~~r--~glL~~Im~aLe~L~LdV~svqsS~-~dg-~-l~~ti~aKv~~~~~~s~~~IkqAL~~v 614 (618)
.+.|.|.|... ..+...++++|+..++-+.++.+.. .++ + +.+++.+.- ....+|.+.+.++
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~-----~~~~~Le~iv~rL 74 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVG-----HTPAKLERLVAEL 74 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEES-----CCHHHHHHHHHHH
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecC-----CCHHHHHHHHHHH
Confidence 47899999875 5788899999999999999999554 244 4 556666553 3344555554443
No 80
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=28.90 E-value=1.9e+02 Score=26.93 Aligned_cols=66 Identities=8% Similarity=0.031 Sum_probs=43.8
Q ss_pred EEEEeCCeEEEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 541 KVSIQEMDVLIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 541 eVsi~e~dvlIeI~C~---~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
+|.+.++-+.|.|... ..+|++.+++++|.+-++.|..+..| +-.+++.|.. -..+...++|++.+
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS--ei~Is~vV~~-------~d~~~Av~aLH~~f 157 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS--EIRISVLCRD-------TELDKAVVALHEAF 157 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TTEEEEEEEG-------GGHHHHHHHHHHHH
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC--CCEEEEEEeH-------HHHHHHHHHHHHHH
Confidence 3445567778887764 67999999999999999998776643 3233333331 23455666676654
No 81
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.99 E-value=19 Score=26.51 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q 007097 460 KYLKKLEARVEELESCMYSVD 480 (618)
Q Consensus 460 ~Yik~L~~~v~~Le~~~~~l~ 480 (618)
.|+.+|+.++.+|+.+..+++
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 488888888888887776554
No 82
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=27.76 E-value=32 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhccccCC
Q 007097 459 IKYLKKLEARVEELESCMYSVD 480 (618)
Q Consensus 459 I~Yik~L~~~v~~Le~~~~~l~ 480 (618)
-.||..|+.+|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887554
No 83
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=24.37 E-value=4e+02 Score=27.56 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 557 SREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 557 ~r~glL~~Im~aLe~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
.++|.|.++|..+...||..+...|--.. +..-+.|.+.+.+. ..-..|++||..+-.
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~AL~~L~~ 275 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA--PWEERFRDALVEIAE 275 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC--TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC--cCCHHHHHHHHHHHH
Confidence 47999999999999999999999987544 44577788888774 333578888877643
No 84
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=23.87 E-value=2e+02 Score=25.11 Aligned_cols=62 Identities=5% Similarity=0.062 Sum_probs=45.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHcc---CCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHH
Q 007097 547 MDVLIEMRCPSREYILLDIMDAINNL---HLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQAL 611 (618)
Q Consensus 547 ~dvlIeI~C~~r~glL~~Im~aLe~L---~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL 611 (618)
.++.++|-.+..+++...|.++++.+ +.++ ..+-|..+..+.++|.+.+... -.+..|-++|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S~--eQv~aiY~~L 99 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATHI--EQVETLYEEL 99 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSSH--HHHHHHHHHH
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECCH--HHHHHHHHHH
Confidence 35677777788999999999999987 6776 6688888888888888776542 2334444444
No 85
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.68 E-value=66 Score=20.79 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 007097 452 ASILSDTIKYLKKLEARVEE 471 (618)
Q Consensus 452 aSIL~daI~Yik~L~~~v~~ 471 (618)
+|-|-+|-.|+.+|.++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999988753
No 86
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=22.88 E-value=2.2e+02 Score=29.31 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred EEEEEcc-CCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 550 LIEMRCP-SREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 550 lIeI~C~-~r~glL~~Im~aLe~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
.|-+.-+ .++|.|.++|..+...+|..+...|--.. +..-+.|.+.+.+. ..-..+++||..+-
T Consensus 203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~aL~~L~ 268 (313)
T 3mwb_A 203 TVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH--ATDSRVADALAGLH 268 (313)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC--TTSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC--CCcHHHHHHHHHHH
Confidence 3445555 78999999999999999999999986432 22234444555443 23356777776653
No 87
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.23 E-value=47 Score=26.49 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhccccC
Q 007097 459 IKYLKKLEARVEELESCMYSV 479 (618)
Q Consensus 459 I~Yik~L~~~v~~Le~~~~~l 479 (618)
-.||..|+.+|..||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999887644
No 88
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.85 E-value=57 Score=23.46 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.3
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHhcccc
Q 007097 448 EVDKASILSDTIKYLKKLEARVEELESCMYS 478 (618)
Q Consensus 448 k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~ 478 (618)
.|..+.-|+++-+-|..|+.+++.|+.++..
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778999999999999999999987743
No 89
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=20.26 E-value=2.5e+02 Score=28.13 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=43.9
Q ss_pred EEEEEEc---cCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 007097 549 VLIEMRC---PSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 616 (618)
Q Consensus 549 vlIeI~C---~~r~glL~~Im~aLe~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 616 (618)
..|-+.. +.++|.|.++|..+...||..+...|--.. +..-+.|-+.+. . ..-..+++||..+-.
T Consensus 187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~--~~d~~v~~aL~~L~~ 255 (267)
T 2qmw_A 187 TSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S--AITTDIKKVIAILET 255 (267)
T ss_dssp SEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C--CSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c--CCcHHHHHHHHHHHH
Confidence 3445556 688999999999999999999999986433 222344444444 2 222567777776543
No 90
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=20.01 E-value=2.2e+02 Score=25.54 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=40.2
Q ss_pred EEEEeCCeEEEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 007097 541 KVSIQEMDVLIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 615 (618)
Q Consensus 541 eVsi~e~dvlIeI~C~---~r~glL~~Im~aLe~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 615 (618)
.|++.++-++|.|... ..+|++.+++++|. ++.|.-+.-.+.+-.+.+.+.. -......++|++.+
T Consensus 81 ~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~-------~d~~~a~~~Lh~~f 149 (157)
T 3mah_A 81 DVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKA-------EDKKKALIALSNKL 149 (157)
T ss_dssp EEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEG-------GGHHHHHHHHHHHH
T ss_pred eEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcH-------HHHHHHHHHHHHHH
Confidence 4455566778888775 46899999999999 7776655422333334443332 23456667777654
Done!