Query 007099
Match_columns 618
No_of_seqs 250 out of 780
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 18:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03106 WRKY: WRKY DNA -bindi 100.0 3.7E-30 8E-35 209.4 2.3 59 359-418 1-59 (60)
2 smart00774 WRKY DNA binding do 100.0 1.1E-29 2.4E-34 206.3 4.5 59 359-417 1-59 (59)
3 PF03101 FAR1: FAR1 DNA-bindin 92.9 0.074 1.6E-06 45.2 2.5 32 389-421 60-91 (91)
4 PF04500 FLYWCH: FLYWCH zinc f 90.4 0.09 2E-06 41.1 0.3 49 359-417 12-62 (62)
5 TIGR00219 mreC rod shape-deter 88.8 0.38 8.2E-06 50.4 3.4 26 165-190 65-90 (283)
6 PRK11677 hypothetical protein; 85.7 2.3 5.1E-05 40.6 6.5 45 154-198 31-79 (134)
7 TIGR02894 DNA_bind_RsfA transc 84.9 2.2 4.7E-05 42.1 6.0 43 153-195 105-147 (161)
8 KOG4196 bZIP transcription fac 84.8 2 4.3E-05 41.2 5.5 42 156-197 78-119 (135)
9 PRK13922 rod shape-determining 83.9 0.98 2.1E-05 46.4 3.5 22 161-182 71-92 (276)
10 PF06295 DUF1043: Protein of u 82.8 3.8 8.2E-05 38.4 6.5 44 155-198 28-75 (128)
11 PF00170 bZIP_1: bZIP transcri 81.9 5.6 0.00012 32.6 6.5 41 156-196 23-63 (64)
12 COG4026 Uncharacterized protei 80.9 3.1 6.7E-05 43.3 5.6 40 160-199 164-203 (290)
13 PF06005 DUF904: Protein of un 77.0 13 0.00029 32.0 7.4 43 160-202 19-68 (72)
14 KOG0646 WD40 repeat protein [G 74.4 7.6 0.00016 43.8 6.7 44 159-202 428-471 (476)
15 COG1792 MreC Cell shape-determ 73.3 3.3 7.1E-05 43.7 3.5 26 160-185 84-109 (284)
16 PF04977 DivIC: Septum formati 73.2 7.5 0.00016 32.1 4.9 38 155-192 20-57 (80)
17 PRK00888 ftsB cell division pr 72.9 8.4 0.00018 35.1 5.6 35 155-189 30-64 (105)
18 TIGR03752 conj_TIGR03752 integ 70.9 11 0.00025 42.7 7.1 32 154-185 68-99 (472)
19 PF07412 Geminin: Geminin; In 70.5 3.5 7.6E-05 41.9 2.8 26 160-185 133-158 (200)
20 PF05377 FlaC_arch: Flagella a 70.5 19 0.00041 30.0 6.5 45 157-202 5-49 (55)
21 PF04201 TPD52: Tumour protein 70.0 18 0.00038 35.9 7.4 48 157-204 27-78 (162)
22 PF14645 Chibby: Chibby family 68.2 12 0.00027 34.9 5.6 44 153-196 72-115 (116)
23 PF13851 GAS: Growth-arrest sp 66.6 23 0.0005 35.7 7.6 51 156-206 90-140 (201)
24 PF06156 DUF972: Protein of un 66.3 14 0.0003 34.1 5.5 20 160-179 23-42 (107)
25 PF14775 NYD-SP28_assoc: Sperm 64.5 10 0.00023 31.6 4.0 26 159-184 33-58 (60)
26 smart00338 BRLZ basic region l 64.0 26 0.00056 28.7 6.2 39 158-196 25-63 (65)
27 PF07407 Seadorna_VP6: Seadorn 62.6 16 0.00035 40.0 6.0 13 521-533 397-409 (420)
28 KOG4378 Nuclear protein COP1 [ 62.5 5.5 0.00012 45.5 2.6 20 161-180 652-671 (673)
29 PF07795 DUF1635: Protein of u 62.5 24 0.00052 36.5 6.9 42 159-200 15-60 (214)
30 PHA03155 hypothetical protein; 61.9 8.1 0.00018 36.3 3.2 26 158-183 7-32 (115)
31 PF11266 DUF3066: Protein of u 60.7 21 0.00046 36.4 6.1 46 157-202 145-191 (219)
32 PF12711 Kinesin-relat_1: Kine 60.3 18 0.0004 32.4 5.0 47 143-189 12-67 (86)
33 PF08650 DASH_Dad4: DASH compl 59.7 11 0.00025 32.7 3.5 36 160-196 26-62 (72)
34 PF15066 CAGE1: Cancer-associa 59.6 23 0.0005 40.3 6.7 45 160-204 398-442 (527)
35 PF07716 bZIP_2: Basic region 59.0 24 0.00051 28.2 5.0 29 158-186 24-52 (54)
36 PF02183 HALZ: Homeobox associ 57.5 24 0.00052 28.0 4.7 31 157-187 10-40 (45)
37 PRK15422 septal ring assembly 57.2 52 0.0011 29.3 7.1 43 160-202 19-61 (79)
38 PF05812 Herpes_BLRF2: Herpesv 56.6 15 0.00033 34.7 4.1 24 160-183 4-27 (118)
39 PHA03162 hypothetical protein; 56.4 14 0.0003 35.7 3.8 23 160-182 14-36 (135)
40 PRK14983 aldehyde decarbonylas 55.8 19 0.0004 37.1 4.8 46 157-202 155-201 (231)
41 PRK13169 DNA replication intia 54.5 20 0.00043 33.4 4.4 23 160-182 23-45 (110)
42 PF15079 DUF4546: Domain of un 54.2 39 0.00084 34.1 6.6 48 153-204 48-95 (205)
43 PF06696 Strep_SA_rep: Strepto 53.8 23 0.0005 25.2 3.6 20 160-179 6-25 (25)
44 PRK13923 putative spore coat p 53.6 27 0.00059 34.9 5.4 39 157-195 109-147 (170)
45 PF11830 DUF3350: Domain of un 53.0 16 0.00034 30.6 3.1 32 148-179 18-56 (56)
46 PF04111 APG6: Autophagy prote 52.9 51 0.0011 35.4 7.8 43 162-204 74-116 (314)
47 PF07875 Coat_F: Coat F domain 52.8 22 0.00047 29.2 3.9 31 173-203 27-57 (64)
48 TIGR02209 ftsL_broad cell divi 51.9 27 0.00058 29.6 4.5 32 156-187 28-59 (85)
49 PF13118 DUF3972: Protein of u 51.8 32 0.00069 33.0 5.4 32 160-191 79-110 (126)
50 COG3105 Uncharacterized protei 51.2 48 0.001 32.1 6.4 43 157-199 39-85 (138)
51 PF15619 Lebercilin: Ciliary p 49.6 55 0.0012 33.1 7.0 50 155-204 15-67 (194)
52 PF07407 Seadorna_VP6: Seadorn 49.3 34 0.00073 37.7 5.7 26 160-185 33-58 (420)
53 TIGR02894 DNA_bind_RsfA transc 49.1 62 0.0013 32.2 7.0 46 155-200 100-145 (161)
54 KOG4571 Activating transcripti 48.8 50 0.0011 35.7 6.8 40 159-198 248-287 (294)
55 PF15294 Leu_zip: Leucine zipp 48.2 26 0.00056 37.5 4.6 38 162-199 128-172 (278)
56 PF08614 ATG16: Autophagy prot 48.0 59 0.0013 32.2 6.9 43 157-199 121-163 (194)
57 COG3074 Uncharacterized protei 45.2 1E+02 0.0023 27.1 6.9 38 160-197 19-56 (79)
58 PF12325 TMF_TATA_bd: TATA ele 44.7 85 0.0018 29.6 7.0 18 155-172 26-43 (120)
59 PF03962 Mnd1: Mnd1 family; I 44.7 56 0.0012 32.7 6.1 40 159-198 117-167 (188)
60 PF03112 DUF244: Uncharacteriz 43.5 32 0.00069 33.9 4.1 20 159-178 77-96 (158)
61 COG3352 FlaC Putative archaeal 42.4 64 0.0014 32.0 6.0 44 154-197 67-110 (157)
62 PF15233 SYCE1: Synaptonemal c 42.0 51 0.0011 31.9 5.1 35 162-196 37-71 (134)
63 PF01920 Prefoldin_2: Prefoldi 41.9 36 0.00077 29.5 3.9 43 160-202 63-105 (106)
64 COG4026 Uncharacterized protei 40.4 63 0.0014 34.0 5.9 60 123-199 116-175 (290)
65 PF01166 TSC22: TSC-22/dip/bun 40.1 43 0.00092 28.4 3.8 25 157-181 19-43 (59)
66 KOG4010 Coiled-coil protein TP 39.4 76 0.0016 32.5 6.1 39 158-196 43-81 (208)
67 PRK13169 DNA replication intia 38.3 69 0.0015 29.9 5.3 35 160-194 9-43 (110)
68 PF09730 BicD: Microtubule-ass 38.2 71 0.0015 38.3 6.6 41 157-197 39-79 (717)
69 PRK10884 SH3 domain-containing 37.9 1.1E+02 0.0024 31.2 7.1 44 156-199 97-151 (206)
70 PF15035 Rootletin: Ciliary ro 37.3 78 0.0017 31.7 5.9 36 162-197 84-119 (182)
71 PRK09413 IS2 repressor TnpA; R 37.1 49 0.0011 30.3 4.1 26 157-182 76-101 (121)
72 PF11932 DUF3450: Protein of u 36.7 1.2E+02 0.0027 31.0 7.4 41 159-199 56-96 (251)
73 PF04999 FtsL: Cell division p 36.6 56 0.0012 28.6 4.3 32 156-187 39-70 (97)
74 PF09789 DUF2353: Uncharacteri 36.5 95 0.0021 33.9 6.8 47 156-202 5-52 (319)
75 smart00340 HALZ homeobox assoc 36.5 78 0.0017 25.4 4.5 26 160-185 6-31 (44)
76 PRK14127 cell division protein 35.6 95 0.0021 29.0 5.7 37 161-197 32-68 (109)
77 PF09726 Macoilin: Transmembra 35.6 96 0.0021 37.1 7.2 50 156-205 422-485 (697)
78 PF06005 DUF904: Protein of un 35.6 1.1E+02 0.0023 26.6 5.6 30 162-191 35-64 (72)
79 PF13815 Dzip-like_N: Iguana/D 34.3 93 0.002 28.7 5.5 34 160-193 81-114 (118)
80 PF06305 DUF1049: Protein of u 34.1 35 0.00075 27.8 2.4 25 155-179 44-68 (68)
81 PF05377 FlaC_arch: Flagella a 33.8 1.1E+02 0.0023 25.7 5.1 35 156-190 11-45 (55)
82 PF10226 DUF2216: Uncharacteri 33.7 46 0.001 34.0 3.6 45 159-203 55-109 (195)
83 COG5124 Protein predicted to b 33.2 1.1E+02 0.0025 31.2 6.2 26 160-185 83-108 (209)
84 KOG2070 Guanine nucleotide exc 33.1 99 0.0022 35.9 6.4 43 157-199 614-656 (661)
85 PF12808 Mto2_bdg: Micro-tubul 33.0 65 0.0014 26.6 3.7 25 161-185 24-48 (52)
86 PF05529 Bap31: B-cell recepto 32.9 65 0.0014 31.6 4.5 36 164-199 152-187 (192)
87 PF07334 IFP_35_N: Interferon- 32.7 81 0.0018 27.9 4.5 13 170-182 4-16 (76)
88 KOG3705 Glycoprotein 6-alpha-L 32.7 57 0.0012 37.0 4.4 35 160-195 45-79 (580)
89 PF10482 CtIP_N: Tumour-suppre 32.4 47 0.001 31.5 3.2 22 161-182 98-119 (120)
90 KOG4673 Transcription factor T 32.1 1.1E+02 0.0025 36.8 6.8 44 160-203 881-927 (961)
91 PF04420 CHD5: CHD5-like prote 32.0 1.3E+02 0.0028 29.3 6.3 39 159-197 40-90 (161)
92 PF14662 CCDC155: Coiled-coil 31.9 1.2E+02 0.0026 31.1 6.2 47 153-199 89-135 (193)
93 TIGR03689 pup_AAA proteasome A 31.5 83 0.0018 36.3 5.6 39 161-199 3-41 (512)
94 PF14662 CCDC155: Coiled-coil 31.2 1.3E+02 0.0027 30.9 6.2 40 154-193 17-56 (193)
95 PRK13922 rod shape-determining 31.0 1.1E+02 0.0023 31.7 5.9 24 164-187 67-90 (276)
96 PF10198 Ada3: Histone acetylt 30.5 1.3E+02 0.0027 28.8 5.8 40 153-192 34-73 (131)
97 PF15058 Speriolin_N: Sperioli 30.5 68 0.0015 32.9 4.2 29 162-190 8-36 (200)
98 KOG4005 Transcription factor X 30.4 1.4E+02 0.003 31.8 6.5 45 156-200 87-134 (292)
99 TIGR00219 mreC rod shape-deter 30.1 92 0.002 32.9 5.3 31 153-183 74-108 (283)
100 PF13094 CENP-Q: CENP-Q, a CEN 30.0 1.8E+02 0.0038 27.9 6.8 42 160-201 42-83 (160)
101 PRK14127 cell division protein 29.9 87 0.0019 29.2 4.5 34 159-192 37-70 (109)
102 PRK10803 tol-pal system protei 29.9 1.4E+02 0.0031 31.1 6.6 39 161-199 56-94 (263)
103 PF14988 DUF4515: Domain of un 29.7 1.2E+02 0.0026 30.9 5.9 41 164-204 154-194 (206)
104 PF10168 Nup88: Nuclear pore c 29.5 1.3E+02 0.0029 36.0 7.0 45 160-204 580-624 (717)
105 PRK10884 SH3 domain-containing 29.2 1.7E+02 0.0036 30.0 6.8 38 160-197 126-163 (206)
106 PF09755 DUF2046: Uncharacteri 28.9 1.4E+02 0.003 32.6 6.4 44 155-198 250-293 (310)
107 PF14282 FlxA: FlxA-like prote 28.9 2.3E+02 0.005 25.8 7.0 50 155-204 22-75 (106)
108 PF08826 DMPK_coil: DMPK coile 28.0 2.7E+02 0.006 23.6 6.7 38 162-199 14-51 (61)
109 PRK14148 heat shock protein Gr 27.4 1.5E+02 0.0033 30.2 6.1 40 159-198 40-79 (195)
110 TIGR03789 pdsO proteobacterial 26.6 1.8E+02 0.0038 30.5 6.6 43 159-205 84-126 (239)
111 PF04888 SseC: Secretion syste 26.5 2E+02 0.0042 30.2 7.0 42 160-201 245-286 (306)
112 PRK13729 conjugal transfer pil 26.5 1.2E+02 0.0026 34.8 5.7 38 159-196 83-120 (475)
113 PF07526 POX: Associated with 25.6 1.5E+02 0.0033 28.5 5.5 35 165-202 72-106 (140)
114 PF10224 DUF2205: Predicted co 25.5 2E+02 0.0044 25.6 5.8 36 160-202 31-66 (80)
115 COG2433 Uncharacterized conser 25.2 1.1E+02 0.0024 36.2 5.2 35 156-190 433-467 (652)
116 PF13851 GAS: Growth-arrest sp 25.0 2.7E+02 0.006 28.1 7.4 38 162-199 44-81 (201)
117 PF01486 K-box: K-box region; 25.0 75 0.0016 28.2 3.1 25 159-183 75-99 (100)
118 PRK14143 heat shock protein Gr 24.6 3.6E+02 0.0078 28.3 8.4 41 158-198 66-106 (238)
119 PF12999 PRKCSH-like: Glucosid 24.6 3.7E+02 0.008 27.2 8.1 43 159-201 125-167 (176)
120 PF12107 VEK-30: Plasminogen ( 24.0 61 0.0013 21.3 1.6 12 165-176 2-13 (17)
121 KOG1962 B-cell receptor-associ 23.7 1.7E+02 0.0037 30.4 5.7 37 161-197 153-189 (216)
122 PF04156 IncA: IncA protein; 22.9 2.8E+02 0.0061 26.8 6.9 40 154-193 83-122 (191)
123 TIGR03752 conj_TIGR03752 integ 22.9 1.9E+02 0.0041 33.3 6.4 42 159-200 66-107 (472)
124 PRK14163 heat shock protein Gr 22.7 4.1E+02 0.0089 27.6 8.2 40 160-199 41-80 (214)
125 TIGR02268 Myxococcus xanthus p 22.6 72 0.0016 34.5 3.0 25 160-184 132-156 (295)
126 PRK14162 heat shock protein Gr 22.5 2.9E+02 0.0063 28.2 7.0 46 153-198 33-78 (194)
127 PF12709 Kinetocho_Slk19: Cent 22.4 2.2E+02 0.0047 25.9 5.4 32 157-188 47-78 (87)
128 KOG1103 Predicted coiled-coil 22.2 1.3E+02 0.0027 33.8 4.7 25 563-587 500-524 (561)
129 PF06632 XRCC4: DNA double-str 22.1 3E+02 0.0064 30.4 7.5 46 160-205 145-194 (342)
130 PF12017 Tnp_P_element: Transp 22.0 1.8E+02 0.0038 30.4 5.5 43 155-197 14-56 (236)
131 PF07989 Microtub_assoc: Micro 21.8 1.7E+02 0.0037 25.4 4.6 31 157-187 41-71 (75)
132 PRK14872 rod shape-determining 21.0 89 0.0019 34.3 3.3 33 152-184 64-99 (337)
133 PF06818 Fez1: Fez1; InterPro 20.6 2.9E+02 0.0062 28.6 6.5 45 160-204 132-194 (202)
134 PLN03097 FHY3 Protein FAR-RED 20.5 94 0.002 38.0 3.6 36 385-422 156-191 (846)
135 KOG3119 Basic region leucine z 20.4 81 0.0018 33.2 2.8 38 163-200 219-256 (269)
No 1
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.96 E-value=3.7e-30 Score=209.37 Aligned_cols=59 Identities=66% Similarity=1.288 Sum_probs=52.3
Q ss_pred CCccchhhcccccccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCC
Q 007099 359 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP 418 (618)
Q Consensus 359 ~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~~gCparKqVQR~~~D~~i~~~tY~G~HnH~ 418 (618)
++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 479999999999999999999999999996 99999999999999999999999999997
No 2
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.96 E-value=1.1e-29 Score=206.26 Aligned_cols=59 Identities=59% Similarity=1.203 Sum_probs=57.0
Q ss_pred CCccchhhcccccccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCC
Q 007099 359 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 417 (618)
Q Consensus 359 ~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~~gCparKqVQR~~~D~~i~~~tY~G~HnH 417 (618)
++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 37999999999999999999999999999679999999999999999999999999998
No 3
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=92.90 E-value=0.074 Score=45.24 Aligned_cols=32 Identities=41% Similarity=0.692 Sum_probs=27.7
Q ss_pred CCCccccceeeecCCCcEEEEEecccCCCCCCc
Q 007099 389 VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 421 (618)
Q Consensus 389 ~gCparKqVQR~~~D~~i~~~tY~G~HnH~~P~ 421 (618)
.+|+|+=.|-+.. |....++.+..+|||++-|
T Consensus 60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P 91 (91)
T PF03101_consen 60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP 91 (91)
T ss_pred cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence 5999999999877 6778899999999999754
No 4
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=90.44 E-value=0.09 Score=41.12 Aligned_cols=49 Identities=29% Similarity=0.581 Sum_probs=26.2
Q ss_pred CCccchhhcccccccCCCCCCccccccccC--CCCccccceeeecCCCcEEEEEecccCCC
Q 007099 359 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNH 417 (618)
Q Consensus 359 ~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~--~gCparKqVQR~~~D~~i~~~tY~G~HnH 417 (618)
+-|||.-+++... ..+.|+||+.. .+|+|+=.+. .++.. ++...++|||
T Consensus 12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~--~~~~~~~HnH 62 (62)
T PF04500_consen 12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGR--VVRTNGEHNH 62 (62)
T ss_dssp EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTE--EEE-S---SS
T ss_pred EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCE--EEECCCccCC
Confidence 5689887776555 45699999985 3799998887 44443 3444499999
No 5
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.76 E-value=0.38 Score=50.44 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHH
Q 007099 165 QVELQQMNTENQRLRDMLSQVTNNYN 190 (618)
Q Consensus 165 QaELeRVkEENqRLK~MLsqVtknYn 190 (618)
=.++.++.+||++||.=|.++...+.
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777766655543333
No 6
>PRK11677 hypothetical protein; Provisional
Probab=85.70 E-value=2.3 Score=40.61 Aligned_cols=45 Identities=22% Similarity=0.408 Sum_probs=36.5
Q ss_pred cchhhHhHHHHHHHHHHhHHHH----HHHHHHHHHHHHhHHHHHHHHHH
Q 007099 154 EKRTKIELTQLQVELQQMNTEN----QRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 154 d~~~k~ELa~LQaELeRVkEEN----qRLK~MLsqVtknYnALQmqL~~ 198 (618)
.++.+.||..+|.||++.+.|= -+--+||++++++|+.|+.||..
T Consensus 31 q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 31 QQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456668888888888877764 36778999999999999999964
No 7
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.89 E-value=2.2 Score=42.08 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=37.4
Q ss_pred ccchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 007099 153 DEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMH 195 (618)
Q Consensus 153 ~d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmq 195 (618)
+.++.+.|++.|+.+++.+..||++|+.=+..|.++|.+|=..
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777899999999999999999999999999999997533
No 8
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=84.84 E-value=2 Score=41.16 Aligned_cols=42 Identities=31% Similarity=0.468 Sum_probs=35.8
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
..+.+-..|+.|++++++||.+|+.=|+-....|.+||.--+
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344456789999999999999999999999999999986544
No 9
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.94 E-value=0.98 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~ML 182 (618)
+..|++|-+++++||.+|+.-+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 71 LFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 10
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=82.83 E-value=3.8 Score=38.43 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=34.6
Q ss_pred chhhHhHHHHHHHHHHhHHHHHH----HHHHHHHHHHhHHHHHHHHHH
Q 007099 155 KRTKIELTQLQVELQQMNTENQR----LRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqR----LK~MLsqVtknYnALQmqL~~ 198 (618)
...+.||..+|.||++.+.|=.. =-++|++|+++|+.|+.||..
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~ 75 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAK 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888877443 345999999999999999864
No 11
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=81.85 E-value=5.6 Score=32.59 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=35.7
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
+.|..+..|+.++..+..||..|+.-+..+...+.+|....
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34458899999999999999999999999999999988654
No 12
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.93 E-value=3.1 Score=43.27 Aligned_cols=40 Identities=28% Similarity=0.432 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
|+..+|.+|+|+..||-+|-+||..+--.|..|..+|-.+
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 3445555666666677777777777777778887777655
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.97 E-value=13 Score=32.03 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTE-------NQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEE-------NqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.++.||.|+++++++ |..|+.-..++...+++.|-|+-.++.+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777665 7777888888888999999998888765
No 14
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=74.45 E-value=7.6 Score=43.81 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
++-..+++|+.|.++|++|+=.||.+--+.|+.++.-+.+-|||
T Consensus 428 ~~s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee~~~ 471 (476)
T KOG0646|consen 428 TRSLELEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEEHQQ 471 (476)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999988777666655
No 15
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=73.31 E-value=3.3 Score=43.68 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
|+..++.|++.+++||+|||++|+-.
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55666677777777777777776543
No 16
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.19 E-value=7.5 Score=32.14 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=31.3
Q ss_pred chhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 007099 155 KRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNAL 192 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnAL 192 (618)
.+.+.|+..|+.++.++++||++|+.-++++.++-..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34556899999999999999999999999995554444
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=72.94 E-value=8.4 Score=35.14 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=30.0
Q ss_pred chhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 007099 155 KRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNY 189 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknY 189 (618)
.+.+.|++.++.|+.++++||++|+.=+..+.++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~ 64 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ 64 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence 34556899999999999999999999998888764
No 18
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.93 E-value=11 Score=42.67 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=21.4
Q ss_pred cchhhHhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 154 EKRTKIELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 154 d~~~k~ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
-+..+.|+..|..|=+++++||+|||.+...|
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSI 99 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34455577777777777778888887754433
No 19
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=70.54 E-value=3.5 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
++..+++||.++++||..|+.+.+++
T Consensus 133 ~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 133 EIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777666554
No 20
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.51 E-value=19 Score=30.01 Aligned_cols=45 Identities=13% Similarity=0.353 Sum_probs=35.6
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.++++..+..+++-++.||+.||.-|+.|.++-..|=+ |+.++-+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs~ 49 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 45678889999999999999999999999999877743 4444443
No 21
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=69.97 E-value=18 Score=35.95 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=40.6
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI----IALMQQQQ 204 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL----~~lMQQqq 204 (618)
.+.|-+.|+.||-+|.||-+-||..|.-=.+....|+.+| +.-|+|.-
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnl 78 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNL 78 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHH
Confidence 3446688999999999999999999999999999999997 54556644
No 22
>PF14645 Chibby: Chibby family
Probab=68.24 E-value=12 Score=34.87 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=32.5
Q ss_pred ccchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 153 DEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 153 ~d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
+..+.+.+..+|++|-.-++-+++-|=+||.+.+-.|+.++..|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566677777777777777777799999999988877654
No 23
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.55 E-value=23 Score=35.69 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=45.8
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQEN 206 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq~k 206 (618)
..|..+..++.||..++-|++-|..-+.+|...+..|+..|..+++.-+++
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999988876654
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.30 E-value=14 Score=34.14 Aligned_cols=20 Identities=50% Similarity=0.723 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLR 179 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK 179 (618)
+++.|+..|..+-|||.+||
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556666655555555554
No 25
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=64.46 E-value=10 Score=31.57 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQ 184 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsq 184 (618)
.+-+.|..|-+.+.+||..||.+|.|
T Consensus 33 ~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 33 LDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36688999999999999999999976
No 26
>smart00338 BRLZ basic region leucin zipper.
Probab=63.99 E-value=26 Score=28.74 Aligned_cols=39 Identities=23% Similarity=0.513 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
+..+..|+.++..+..||..|+.=++++...+..|.-.+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999999999998888877777776544
No 27
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=62.61 E-value=16 Score=39.97 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=8.5
Q ss_pred hcccccCCCcccc
Q 007099 521 GQALYNQSKFSGL 533 (618)
Q Consensus 521 ~~~~~~~~~~~~~ 533 (618)
.|+.||..||-|.
T Consensus 397 ~~~~~~~~~~~~~ 409 (420)
T PF07407_consen 397 DQGAWNRNKFMGH 409 (420)
T ss_pred ccccccccccccc
Confidence 3566777777654
No 28
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=62.54 E-value=5.5 Score=45.54 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRD 180 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~ 180 (618)
.+.|++||++++||||+||-
T Consensus 652 Ne~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 652 NEMLKAELKFLREENQTLRC 671 (673)
T ss_pred hHHHHHHHHHHHHhhhhhhc
Confidence 34577888999999998873
No 29
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=62.47 E-value=24 Score=36.46 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=37.0
Q ss_pred HhHHH----HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 159 IELTQ----LQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALM 200 (618)
Q Consensus 159 ~ELa~----LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lM 200 (618)
.||++ .++||+|.++|=.+|+.+|..+.+.=-..|-|+-.+|
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38877 7999999999999999999999998888888886665
No 30
>PHA03155 hypothetical protein; Provisional
Probab=61.85 E-value=8.1 Score=36.33 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.7
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLs 183 (618)
..-++.|.+||.|++-||+.||.-|-
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999996553
No 31
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=60.65 E-value=21 Score=36.37 Aligned_cols=46 Identities=35% Similarity=0.416 Sum_probs=37.1
Q ss_pred hhHhHHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRL-RDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRL-K~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.|.-++..++||++++.||--| +.||+||..+-..|.|-=.++|..
T Consensus 145 Lk~~f~~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lved 191 (219)
T PF11266_consen 145 LKANFEQSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVED 191 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3456789999999999999876 799999999999999987666543
No 32
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=60.30 E-value=18 Score=32.44 Aligned_cols=47 Identities=28% Similarity=0.460 Sum_probs=31.0
Q ss_pred cCCCCCCc---ccccchhhHhHHHHHH------HHHHhHHHHHHHHHHHHHHHHhH
Q 007099 143 VDDGVSSD---HADEKRTKIELTQLQV------ELQQMNTENQRLRDMLSQVTNNY 189 (618)
Q Consensus 143 vDdG~S~~---~~~d~~~k~ELa~LQa------ELeRVkEENqRLK~MLsqVtknY 189 (618)
++++.+.. .++.+..+.|+..|++ ||-|-..||.|||+.|-+.-+=|
T Consensus 12 ~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 12 LDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445443 2234556678888886 66677889999998887765544
No 33
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=59.72 E-value=11 Score=32.75 Aligned_cols=36 Identities=28% Similarity=0.610 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH-HHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNA-LQMHI 196 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnA-LQmqL 196 (618)
-++.|-.+|++++..|+.| +++.||+++|+. .|-||
T Consensus 26 sv~~lN~~l~eIn~~N~~l-e~~~qm~enY~~nv~fnL 62 (72)
T PF08650_consen 26 SVAELNQELEEINRANKNL-EIVAQMWENYQRNVQFNL 62 (72)
T ss_pred HHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999 999999999974 45444
No 34
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=59.58 E-value=23 Score=40.33 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq 204 (618)
-|+..|-.|.+-+.|++-|-.=|..|.-+|-.||-+.++.|||..
T Consensus 398 ~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 398 ALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 367789999999999999999999999999999999999999953
No 35
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=58.96 E-value=24 Score=28.23 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=22.8
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLSQVT 186 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLsqVt 186 (618)
|.....|+.++..+.+||..|+..+..+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888888888888888888777654
No 36
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.52 E-value=24 Score=27.96 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=24.6
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtk 187 (618)
-|..-..|++|-.++..||++|+.+|..+..
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888999999999999988877654
No 37
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.17 E-value=52 Score=29.32 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.++-||.|++++||+|..|..=.+.+..+-.+|...--.+-|+
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6788999999999999999998888777777777766655443
No 38
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=56.65 E-value=15 Score=34.71 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLs 183 (618)
-++.|.+||.|++-||+.||.-|-
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999995443
No 39
>PHA03162 hypothetical protein; Provisional
Probab=56.44 E-value=14 Score=35.65 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~ML 182 (618)
.++.|.+||.|++-||+.||.-|
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999655
No 40
>PRK14983 aldehyde decarbonylase; Provisional
Probab=55.77 E-value=19 Score=37.10 Aligned_cols=46 Identities=33% Similarity=0.391 Sum_probs=39.2
Q ss_pred hhHhHHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRL-RDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRL-K~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.|.-++..|+||++++.||--| +.||+||..+-..|.|-=.++|..
T Consensus 155 Lk~~f~~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lved 201 (231)
T PRK14983 155 LKANFETSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVED 201 (231)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556889999999999999866 899999999999999976666544
No 41
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=54.51 E-value=20 Score=33.44 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~ML 182 (618)
+++.|+.+|..+-|||.+|+.--
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777776443
No 42
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=54.19 E-value=39 Score=34.09 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=39.2
Q ss_pred ccchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 153 DEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 153 ~d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq 204 (618)
.-++.|+||..+++||.+--||-+.+|.+.+ ++|--||- |+.||..-|
T Consensus 48 ~T~eLkNeLREVREELkEKmeEIKQIKdiMD---KDFDKL~E-FVEIMKeMQ 95 (205)
T PF15079_consen 48 GTQELKNELREVREELKEKMEEIKQIKDIMD---KDFDKLHE-FVEIMKEMQ 95 (205)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHH-HHHHHHHHH
Confidence 3466889999999999999999999998765 68888874 778877643
No 43
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=53.79 E-value=23 Score=25.24 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLR 179 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK 179 (618)
-|+.-|+||.||+.+|...+
T Consensus 6 kla~YqaeLa~vqk~na~~~ 25 (25)
T PF06696_consen 6 KLAQYQAELARVQKANADYE 25 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 47899999999999998753
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=53.64 E-value=27 Score=34.91 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=34.5
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMH 195 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmq 195 (618)
.+.++..|+.+.++...||++|+.=+.-+.++|.+|-..
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999998543
No 45
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=52.97 E-value=16 Score=30.60 Aligned_cols=32 Identities=47% Similarity=0.598 Sum_probs=22.6
Q ss_pred CCcccccchhhHhHHHH-------HHHHHHhHHHHHHHH
Q 007099 148 SSDHADEKRTKIELTQL-------QVELQQMNTENQRLR 179 (618)
Q Consensus 148 S~~~~~d~~~k~ELa~L-------QaELeRVkEENqRLK 179 (618)
++.....+|.+.||-.| |.=|-||-.||+||+
T Consensus 18 ~~~~~~~krt~eelR~LWrkAI~QqIlL~RMEKEN~kLq 56 (56)
T PF11830_consen 18 SSPVEKKKRTREELRELWRKAIHQQILLLRMEKENQKLQ 56 (56)
T ss_pred CccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33343567777777544 566899999999984
No 46
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.86 E-value=51 Score=35.38 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq 204 (618)
+.|..||..+.+|=++|+..-.+..+.||.||+++..+.++..
T Consensus 74 ~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 74 EELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555666666778889999999887655443
No 47
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=52.79 E-value=22 Score=29.18 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 173 TENQRLRDMLSQVTNNYNALQMHIIALMQQQ 203 (618)
Q Consensus 173 EENqRLK~MLsqVtknYnALQmqL~~lMQQq 203 (618)
..|..||..|.++-+.....|..++++|.++
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688999999999999999999999999983
No 48
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.94 E-value=27 Score=29.62 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=26.8
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqVtk 187 (618)
....+++.++.|+.+.++||.+|+.-++.+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34458899999999999999999988877665
No 49
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=51.81 E-value=32 Score=32.96 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNA 191 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnA 191 (618)
=|++.++=++-+++||+=||+-|-.+-+-|..
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~e 110 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEE 110 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777788999999999999999999999943
No 50
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.23 E-value=48 Score=32.12 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=33.6
Q ss_pred hhHhHHHHHHHHHHhHHHHH----HHHHHHHHHHHhHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQ----RLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENq----RLK~MLsqVtknYnALQmqL~~l 199 (618)
...||..+|.+|+.-+.|=. +=-+||+.+..+|..|+.|+.+-
T Consensus 39 ~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~s 85 (138)
T COG3105 39 LQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAKS 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577778887777777754 35689999999999999998754
No 51
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=49.64 E-value=55 Score=33.05 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=37.4
Q ss_pred chhhHhHHHHHHHHHHhHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHH
Q 007099 155 KRTKIELTQLQVELQQMNTENQRLRDMLSQ---VTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqRLK~MLsq---VtknYnALQmqL~~lMQQqq 204 (618)
++.++++..|+.+|.+++.||+-||.+--+ --..|-.-+..|-.+|+++.
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 456789999999999999999999988665 23555555666666666543
No 52
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.25 E-value=34 Score=37.66 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
|+..||.|=.++|.||..||.=|+++
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.15 E-value=62 Score=32.25 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=28.2
Q ss_pred chhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 155 KRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALM 200 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lM 200 (618)
...+.|...|+.|+.++.++|+.|..=+..+.+.+..++--.-.|+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666666666666655544433
No 54
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=48.78 E-value=50 Score=35.66 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
.|.+.|..|++-+..+|++||+-++++.+--.-|+-=|..
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999988754443
No 55
>PF15294 Leu_zip: Leucine zipper
Probab=48.19 E-value=26 Score=37.49 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=28.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhH-------HHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNY-------NALQMHIIAL 199 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknY-------nALQmqL~~l 199 (618)
+-|..|+.|+++||++||.-|-.+...| ..|+.+|-.+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5599999999999999999665554444 4567777655
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.98 E-value=59 Score=32.17 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=34.9
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.+.+++.|+.++....+|-+-+...+..+..-|-+||++|..+
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777888888888888888889999999999998644
No 57
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.16 E-value=1e+02 Score=27.15 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
.+.-||.|++++||+|..|..=....-..--+|+..=-
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 56779999999999999887655554455555554433
No 58
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.72 E-value=85 Score=29.64 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=10.6
Q ss_pred chhhHhHHHHHHHHHHhH
Q 007099 155 KRTKIELTQLQVELQQMN 172 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVk 172 (618)
++-+.|+..||.||.++.
T Consensus 26 r~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 26 RRLEGELASLQEELARLE 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666666663
No 59
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.66 E-value=56 Score=32.68 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=32.2
Q ss_pred HhHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 159 IELTQLQVELQ-----------QMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 159 ~ELa~LQaELe-----------RVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
.++..|++||. ++++|.+++|.-+++.|.|...|+-++..
T Consensus 117 ~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 117 KELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35555665554 78889999999999999999999988865
No 60
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=43.52 E-value=32 Score=33.93 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHhHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRL 178 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRL 178 (618)
.|+..||.||+++..||+++
T Consensus 77 ~EI~~lq~ElnKiqnEn~k~ 96 (158)
T PF03112_consen 77 MEIDSLQTELNKIQNENKKR 96 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999886
No 61
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=42.40 E-value=64 Score=31.97 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=38.2
Q ss_pred cchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 154 EKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 154 d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
..-.|..++..+.||+|+.++=++|....+.|+++.|-+.-++.
T Consensus 67 ~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~ 110 (157)
T COG3352 67 IEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTP 110 (157)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhH
Confidence 34456678999999999999999999999999999999876653
No 62
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=42.00 E-value=51 Score=31.88 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
.+|+.||..++.|.=+|++.|+.--.-|.-||.|-
T Consensus 37 eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhc 71 (134)
T PF15233_consen 37 EALQRELDSLNGEKVHLEEILNKKQETLRILQLHC 71 (134)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999998875
No 63
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=41.92 E-value=36 Score=29.55 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
-+..|+.+++.+.+|=.+|+..+..+.+.+..|+..|..++++
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999999999999998876654
No 64
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.40 E-value=63 Score=34.04 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=45.8
Q ss_pred cccccccccccccCCCCccccCCCCCCcccccchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 123 DVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 123 ~VNtGL~Llt~~NtgSDqS~vDdG~S~~~~~d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
-|-.||.-|+ |+.+=+ ..|.-+..+++.|++..+||.-|+.-|+++...|+++|-+|-.+
T Consensus 116 lvRAGLktL~-------------~v~~~~----d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 116 LVRAGLKTLQ-------------RVPEYM----DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHh-------------ccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888887 444322 24445677888888888999999999999999999999888655
No 65
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=40.06 E-value=43 Score=28.38 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=18.9
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDM 181 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~M 181 (618)
-|..++.|++...++..||..||..
T Consensus 19 LK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 19 LKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778888888888888888753
No 66
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=39.36 E-value=76 Score=32.53 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=35.3
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
+.|-..|+.||-+|-||-.-||.+|.-=.+.+..|...|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345568999999999999999999999999999999887
No 67
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.26 E-value=69 Score=29.90 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQM 194 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQm 194 (618)
.++.|..-|+.+-+|=..||..|.++.+-=.+|++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666566654
No 68
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.19 E-value=71 Score=38.32 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=32.9
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
.++|+..++.|+.+++.||.||-.+..++.+++..|-.+.-
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~ 79 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERK 79 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588889999999999999999998888887776665543
No 69
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.94 E-value=1.1e+02 Score=31.25 Aligned_cols=44 Identities=9% Similarity=0.173 Sum_probs=24.4
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDM-----------LSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~M-----------LsqVtknYnALQmqL~~l 199 (618)
+.+.|++.|++||.++..+....+.= .+++.+.|..|+.+|..+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777665553333322 222566666666666544
No 70
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=37.31 E-value=78 Score=31.71 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
+.|++.|+.++..|+.|+.=|.+++.++..|+--|.
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999987664
No 71
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=37.05 E-value=49 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=17.7
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~ML 182 (618)
.+.|+..|+.||++++.||.-||.-+
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777777776543
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.68 E-value=1.2e+02 Score=30.98 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.|+..|+.|++.++..|++|...++...+.=..|+.++-.+
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777777777776666666666666554
No 73
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=36.62 E-value=56 Score=28.63 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=24.0
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqVtk 187 (618)
....|+..++.|..++++||++|+-=++..++
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34457889999999999999999865555443
No 74
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.52 E-value=95 Score=33.90 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=41.9
Q ss_pred hhhH-hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 156 RTKI-ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 156 ~~k~-ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
++|. -|-.|-.||+.-.+|=-+.|.|.+++...|.+|+....+++++
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~ 52 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQE 52 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3555 4788999999999999999999999999999999999888765
No 75
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.47 E-value=78 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
+-+-|+.=-+.+.+||+||+.=|.++
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777788889999888655544
No 76
>PRK14127 cell division protein GpsB; Provisional
Probab=35.63 E-value=95 Score=29.02 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
|..+-.+++++..||.+|++.+.++...-..|+.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555556666666666666666655555455555443
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.60 E-value=96 Score=37.06 Aligned_cols=50 Identities=32% Similarity=0.457 Sum_probs=36.1
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHh
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDM--------------LSQVTNNYNALQMHIIALMQQQQE 205 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~M--------------LsqVtknYnALQmqL~~lMQQqq~ 205 (618)
|.+.|+..||+||..++..=+.||.. |.++-.++-.||.++..|+++.++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777776655555555 777788888999999988887653
No 78
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.57 E-value=1.1e+02 Score=26.61 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNA 191 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnA 191 (618)
..|+.|-..+++||++||.=-+.+...-.+
T Consensus 35 ~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 35 NELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555665555444444444333
No 79
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.26 E-value=93 Score=28.67 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQ 193 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQ 193 (618)
++..|++++..+.+|+++|+..+.+..+.-..|+
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888877777766666554
No 80
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.10 E-value=35 Score=27.79 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=18.9
Q ss_pred chhhHhHHHHHHHHHHhHHHHHHHH
Q 007099 155 KRTKIELTQLQVELQQMNTENQRLR 179 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqRLK 179 (618)
.+.+.++..++.|++++.+|+++||
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556677888888888888888775
No 81
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.75 E-value=1.1e+02 Score=25.67 Aligned_cols=35 Identities=9% Similarity=0.305 Sum_probs=23.4
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYN 190 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYn 190 (618)
+.+..+..+|.|.+.++++.++|.+-+-.|..=|-
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777766665555553
No 82
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=33.68 E-value=46 Score=33.96 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLS----------QVTNNYNALQMHIIALMQQQ 203 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLs----------qVtknYnALQmqL~~lMQQq 203 (618)
.|+..|+....|+.+||+.||+..- ++.+.++-+-.+-..+|+|.
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~e 109 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQE 109 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHH
Confidence 3888999999999999999998652 24455555555556666664
No 83
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=33.18 E-value=1.1e+02 Score=31.17 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
-+..|+++++||+-.-.++|+-++.-
T Consensus 83 ~~~~l~~~~~~~kqdi~t~~e~i~~e 108 (209)
T COG5124 83 SSELLKKKIQEVKQDIATYKEEIDKE 108 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56789999999999999999888754
No 84
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=33.12 E-value=99 Score=35.92 Aligned_cols=43 Identities=12% Similarity=0.253 Sum_probs=34.8
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.-..+-+|+-|+.+|+.||+|+|..|++=-+.-..|+.-|..+
T Consensus 614 lvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~ 656 (661)
T KOG2070|consen 614 LVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKM 656 (661)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678999999999999999999999888888887655443
No 85
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=32.99 E-value=65 Score=26.56 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqV 185 (618)
-..+..+|.++..||+.||.-|+..
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988653
No 86
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.90 E-value=65 Score=31.58 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=23.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 164 LQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 164 LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.++|....++|-++||.=|++...++.+|+.|.-.+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777777765443
No 87
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=32.70 E-value=81 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=6.3
Q ss_pred HhHHHHHHHHHHH
Q 007099 170 QMNTENQRLRDML 182 (618)
Q Consensus 170 RVkEENqRLK~ML 182 (618)
++.+||.|||+-|
T Consensus 4 ei~eEn~~Lk~ei 16 (76)
T PF07334_consen 4 EIQEENARLKEEI 16 (76)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555433
No 88
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.65 E-value=57 Score=36.99 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMH 195 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmq 195 (618)
++.+..+-|+++++.|+-||.||+.+...-+ ++.+
T Consensus 45 ~~sq~l~~le~l~qqNEdLk~~~e~lr~~~~-~d~~ 79 (580)
T KOG3705|consen 45 AWSQTLEALEKLQQQNEDLKSILEKLRQERN-DDHK 79 (580)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcccc-cchh
Confidence 6888999999999999999999999998877 4444
No 89
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=32.41 E-value=47 Score=31.51 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~ML 182 (618)
+..|..||..+++||++|++=|
T Consensus 98 i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 98 IFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHh
Confidence 5677899999999999999744
No 90
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=32.10 E-value=1.1e+02 Score=36.75 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRD---MLSQVTNNYNALQMHIIALMQQQ 203 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~---MLsqVtknYnALQmqL~~lMQQq 203 (618)
+-.+|-+||-+|-.||.+||+ |+.-|..-|.+||.+.-+++|--
T Consensus 881 ~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lqmy 927 (961)
T KOG4673|consen 881 IRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMY 927 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445677788888889999986 66677889999999999998874
No 91
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.01 E-value=1.3e+02 Score=29.29 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHhHHHHH------------HHHHHHHHHHHhHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQ------------RLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENq------------RLK~MLsqVtknYnALQmqL~ 197 (618)
.|...||.|+.++++|+. ||+.-++++.+.+..|+..+.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777775 688888888888888776654
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.87 E-value=1.2e+02 Score=31.07 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=38.1
Q ss_pred ccchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 153 DEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 153 ~d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.-+..+.|.-.|-+||+.+.+||.+|..=.+-+.+.|..|.+.=.++
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHH
Confidence 34555667788999999999999999999999999999987755544
No 93
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=31.49 E-value=83 Score=36.25 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
+..|+.++..+.+.|+||.++|.+.......|+.++-.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 41 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQL 41 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999998766
No 94
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.24 E-value=1.3e+02 Score=30.95 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=31.6
Q ss_pred cchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 007099 154 EKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQ 193 (618)
Q Consensus 154 d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQ 193 (618)
+++-..|.+.|+..++-|-+.|.||..=+..+.+.|.+||
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567788888888888888888888888888888887
No 95
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.02 E-value=1.1e+02 Score=31.66 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 164 LQVELQQMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 164 LQaELeRVkEENqRLK~MLsqVtk 187 (618)
.-..+.++++||++||.=+.++..
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~ 90 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELES 90 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777777655554433
No 96
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=30.51 E-value=1.3e+02 Score=28.83 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=33.3
Q ss_pred ccchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 007099 153 DEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNAL 192 (618)
Q Consensus 153 ~d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnAL 192 (618)
+|.+.-.||-.||.||..+...|...|..|-.+.+.--+-
T Consensus 34 eDDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~ 73 (131)
T PF10198_consen 34 EDDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMAR 73 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777999999999999999999999998888764333
No 97
>PF15058 Speriolin_N: Speriolin N terminus
Probab=30.45 E-value=68 Score=32.89 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYN 190 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYn 190 (618)
+.|+..|+|+-.||++||..+.-|-+|+-
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56888999999999999988877776643
No 98
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=30.42 E-value=1.4e+02 Score=31.79 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHH---HHHHHHHHhHHHHHHHHHHHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLR---DMLSQVTNNYNALQMHIIALM 200 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK---~MLsqVtknYnALQmqL~~lM 200 (618)
|.|..++.+.-||..+-|||++|+ +.|-+++++.-+=++-|...|
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~l 134 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSEL 134 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.07 E-value=92 Score=32.94 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=15.3
Q ss_pred ccchhhHhHHHHHHHHH----HhHHHHHHHHHHHH
Q 007099 153 DEKRTKIELTQLQVELQ----QMNTENQRLRDMLS 183 (618)
Q Consensus 153 ~d~~~k~ELa~LQaELe----RVkEENqRLK~MLs 183 (618)
|+++.|.|++.|+++|. ++++||+|||.+|+
T Consensus 74 EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 74 ENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444433333 25666666665543
No 100
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.04 E-value=1.8e+02 Score=27.90 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQ 201 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQ 201 (618)
.++.||+|+.++..+.++-...|.++.++..++...+-....
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999977765433
No 101
>PRK14127 cell division protein GpsB; Provisional
Probab=29.92 E-value=87 Score=29.25 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNAL 192 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnAL 192 (618)
.++..|..|+.++++||.+|+.=|.+....=...
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4677888888888888888888887776644443
No 102
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.91 E-value=1.4e+02 Score=31.13 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
+..|+..|+.++.|..+||+.+++....-..|+-+--++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998665555554444333
No 103
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=29.68 E-value=1.2e+02 Score=30.87 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=33.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 164 LQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 164 LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq 204 (618)
+-.--..|..||++|+.=|.+....|..|+.+=..|-.+++
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~ 194 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQ 194 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555679999999999999999999999998877755533
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.53 E-value=1.3e+02 Score=36.03 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq 204 (618)
+|..++.|++.+++.-++|.+-++++.+.+..|..++-.++|.-+
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777777888888888888888888777777643
No 105
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.22 E-value=1.7e+02 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
+++.++.++.++++||++|+.=|.+..+.=..|+.++-
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555777777777777666666555555543
No 106
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.87 E-value=1.4e+02 Score=32.64 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=0.0
Q ss_pred chhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 155 KRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
......++....|...+++||+||+.-|.+-..-.-+|=.||..
T Consensus 250 ~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 250 QEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 107
>PF14282 FlxA: FlxA-like protein
Probab=28.85 E-value=2.3e+02 Score=25.85 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=36.6
Q ss_pred chhhHhHHHHHHHHHHhHH-HH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 155 KRTKIELTQLQVELQQMNT-EN---QRLRDMLSQVTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkE-EN---qRLK~MLsqVtknYnALQmqL~~lMQQqq 204 (618)
++.+.++..|+.+|..|.+ +. +.-+.....|..--..|+.||..+..++.
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688999999999988 33 55566666777777888888877755543
No 108
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.05 E-value=2.7e+02 Score=23.58 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=33.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
-.++.||.+|++.|.-+..-|..--..-..|+.++-.+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999889999887655
No 109
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.40 E-value=1.5e+02 Score=30.15 Aligned_cols=40 Identities=5% Similarity=0.155 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
.++..|+.+|..+++|.+.||+.+-+..-+|-.++.+...
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888887777777777777766543
No 110
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=26.57 E-value=1.8e+02 Score=30.50 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQE 205 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq~ 205 (618)
.+|+.-+.+|-.++++|++| .++...|..+|.||-.+.+++++
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 126 (239)
T TIGR03789 84 QHIAQQRQQMVALTQKQQAL----EQLEAEYQQAQVHLETLQQDQQQ 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778999999999998 67778999999999887545443
No 111
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=26.49 E-value=2e+02 Score=30.21 Aligned_cols=42 Identities=17% Similarity=0.357 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQ 201 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQ 201 (618)
|+..+++++..++.+-+.|..++++..+.+..++-.+-++|+
T Consensus 245 ~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~ 286 (306)
T PF04888_consen 245 EAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMK 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666655554444
No 112
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.46 E-value=1.2e+02 Score=34.84 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
.+|+.|+.||+.|...++.|...|+.+...-..|+.|+
T Consensus 83 KqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 83 KQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35666777777666667777777777777777777775
No 113
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=25.64 E-value=1.5e+02 Score=28.54 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 165 QVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 165 QaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
+.|+++.| -||-.||++|.+.|+.-..|+-.++--
T Consensus 72 ~~e~q~kK---~KLl~mL~eVd~RY~qY~~Qmq~Vvss 106 (140)
T PF07526_consen 72 RQELQRKK---AKLLSMLDEVDRRYRQYYDQMQAVVSS 106 (140)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 489999999999999887776555443
No 114
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.50 E-value=2e+02 Score=25.57 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.|..|-..++.|++||.+|+ ..=.-||..+-.||..
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~-------~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLE-------SENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 45556667778889998887 3445688888888776
No 115
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.23 E-value=1.1e+02 Score=36.23 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=26.7
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYN 190 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYn 190 (618)
+.+.|...|+.||++|+.|+.+|+.=|+++-..+.
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888888888888887766544
No 116
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.04 E-value=2.7e+02 Score=28.10 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
...+-+|.++..||+||++=|.+....-..|+.+|..+
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777766666666554
No 117
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.01 E-value=75 Score=28.22 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLs 183 (618)
.++..|+.....+.+||..|+.++.
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999998875
No 118
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.65 E-value=3.6e+02 Score=28.30 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=31.7
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
..++..|+.||..+++|.+.|+..+-++..+|-.++.+...
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888877777777777777643
No 119
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.65 E-value=3.7e+02 Score=27.23 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=36.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQ 201 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQ 201 (618)
.....++.+++.+++=.++...|+.+.-+.+..|+.++..+-+
T Consensus 125 ~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ 167 (176)
T PF12999_consen 125 EYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEK 167 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888889999999999999999999999999887633
No 120
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=24.04 E-value=61 Score=21.32 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=8.8
Q ss_pred HHHHHHhHHHHH
Q 007099 165 QVELQQMNTENQ 176 (618)
Q Consensus 165 QaELeRVkEENq 176 (618)
.+||+|+++|-.
T Consensus 2 ~aeLerLknerH 13 (17)
T PF12107_consen 2 EAELERLKNERH 13 (17)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHhcc
Confidence 478888888743
No 121
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.68 E-value=1.7e+02 Score=30.44 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
.+.+.+|++..++|=++...=|+...+++-+|++|+-
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 122
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.88 E-value=2.8e+02 Score=26.82 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=31.3
Q ss_pred cchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 007099 154 EKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQ 193 (618)
Q Consensus 154 d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQ 193 (618)
....+..+..++.||.++.+....+...|..+.+.|..++
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445557788888888888888888888888888888887
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.87 E-value=1.9e+02 Score=33.30 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALM 200 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lM 200 (618)
.++.+++.||.++..||++||.=.+++.+.=.++--|+-..+
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 488999999999999999999988888776666655554444
No 124
>PRK14163 heat shock protein GrpE; Provisional
Probab=22.74 E-value=4.1e+02 Score=27.60 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
+...|+.+|..+++|.+.|+..|=+..-+|..++.+...-
T Consensus 41 ~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 41 ATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888777777777777777666443
No 125
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=22.63 E-value=72 Score=34.48 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQ 184 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsq 184 (618)
..+.+++|+.+.++||++|++=+++
T Consensus 132 t~es~~~E~~~~r~~~~~~~~e~~~ 156 (295)
T TIGR02268 132 TAASYQQEVVELRARNQLLEEENAR 156 (295)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544444
No 126
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.47 E-value=2.9e+02 Score=28.19 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=33.9
Q ss_pred ccchhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 153 DEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 153 ~d~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
++...-.++..|+.+|..+.+|...|++-|-++..+|..++.+...
T Consensus 33 ~~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 33 EDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445777888888888888888888777777777777776643
No 127
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.42 E-value=2.2e+02 Score=25.93 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=25.1
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNN 188 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtkn 188 (618)
-+..+..|+.|+.....||++||.=|+..+..
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999877766544
No 128
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=22.20 E-value=1.3e+02 Score=33.78 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=16.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHH
Q 007099 563 DTVSAATAAITADPNFTAALAAAIT 587 (618)
Q Consensus 563 ~tv~aat~ai~~dP~f~~alaaAis 587 (618)
+-+.||.....+-|.-..||---++
T Consensus 500 ~d~~AA~Qla~~gps~~q~l~Rf~S 524 (561)
T KOG1103|consen 500 EDLEAAIQLANAGPSSNQALERFLS 524 (561)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHh
Confidence 4456666666778888887765443
No 129
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=22.07 E-value=3e+02 Score=30.38 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHh
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNN----YNALQMHIIALMQQQQE 205 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtkn----YnALQmqL~~lMQQqq~ 205 (618)
+...|+.|-+|+++|..+|..-|++.++. =.+|...|+.||-..+.
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~ 194 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKA 194 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444445555555555544444444432 24677888888766543
No 130
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=21.96 E-value=1.8e+02 Score=30.45 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=32.2
Q ss_pred chhhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 155 KRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 155 ~~~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
+..+.|...|+.++.++..+.++||.-|+...+=++.|..-|.
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~Fs 56 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIFS 56 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455688999999999999999999888766655556644443
No 131
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.85 E-value=1.7e+02 Score=25.44 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=25.9
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtk 187 (618)
.-.|...|++|+..++.|.++++.+|.+..+
T Consensus 41 ~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 41 LLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778999999999999999999988764
No 132
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=20.96 E-value=89 Score=34.32 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred cccchhhHhHHHHHHHHHHhH---HHHHHHHHHHHH
Q 007099 152 ADEKRTKIELTQLQVELQQMN---TENQRLRDMLSQ 184 (618)
Q Consensus 152 ~~d~~~k~ELa~LQaELeRVk---EENqRLK~MLsq 184 (618)
+|+++-|.|++.|++|+.+.. .||.+||..|+.
T Consensus 64 ~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~~ 99 (337)
T PRK14872 64 TENFLLKERIALLEERLKSYEEANQTPPLFSEILSP 99 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 133
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.57 E-value=2.9e+02 Score=28.58 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNY------------------NALQMHIIALMQQQQ 204 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknY------------------nALQmqL~~lMQQqq 204 (618)
.+..|+.|++|++.|=.++|.-.++...+| ..||++++.+.|..+
T Consensus 132 ~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~ 194 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQ 194 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777666555554 568888888887754
No 134
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=20.48 E-value=94 Score=38.00 Aligned_cols=36 Identities=31% Similarity=0.612 Sum_probs=29.0
Q ss_pred cccCCCCccccceeeecCCCcEEEEEecccCCCCCCcc
Q 007099 385 CTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPA 422 (618)
Q Consensus 385 Ct~~~gCparKqVQR~~~D~~i~~~tY~G~HnH~~P~~ 422 (618)
|+- .||+|+=.|.+..+ ..-.++-+..+|||++-+.
T Consensus 156 ~tR-tGC~A~m~Vk~~~~-gkW~V~~fv~eHNH~L~p~ 191 (846)
T PLN03097 156 CAK-TDCKASMHVKRRPD-GKWVIHSFVKEHNHELLPA 191 (846)
T ss_pred ccC-CCCceEEEEEEcCC-CeEEEEEEecCCCCCCCCc
Confidence 554 59999999988544 4578999999999998654
No 135
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.42 E-value=81 Score=33.20 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=23.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 163 QLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALM 200 (618)
Q Consensus 163 ~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lM 200 (618)
.++.-...+..||+.||.-++++.+.=..|.-.|+.++
T Consensus 219 e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 219 EMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455667888888777777766666665555443
Done!