Query 007099
Match_columns 618
No_of_seqs 250 out of 780
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.8E-33 6.1E-38 237.3 6.3 74 347-421 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.7E-33 1.2E-37 236.3 4.5 75 346-421 4-78 (78)
3 2zxx_A Geminin; coiled-coil, c 92.4 0.082 2.8E-06 45.2 3.3 36 159-202 41-76 (79)
4 1wlq_A Geminin; coiled-coil; 2 86.5 0.56 1.9E-05 40.4 3.8 27 159-185 45-71 (83)
5 1uii_A Geminin; human, DNA rep 85.6 0.8 2.7E-05 39.5 4.4 26 160-185 54-79 (83)
6 2j5u_A MREC protein; bacterial 82.6 0.75 2.6E-05 46.0 3.4 31 153-183 27-60 (255)
7 1t2k_D Cyclic-AMP-dependent tr 79.9 3 0.0001 33.1 5.4 41 157-197 20-60 (61)
8 2wvr_A Geminin; DNA replicatio 79.8 1.5 5.2E-05 43.2 4.4 35 160-202 123-157 (209)
9 2wt7_A Proto-oncogene protein 76.7 7.1 0.00024 31.3 6.7 40 157-196 21-60 (63)
10 1ci6_A Transcription factor AT 73.0 8.2 0.00028 31.1 6.2 40 158-197 22-61 (63)
11 2rpr_A Flywch-type zinc finger 72.3 1.4 4.8E-05 36.9 1.6 51 357-420 22-74 (87)
12 1ci6_A Transcription factor AT 72.2 3.4 0.00012 33.3 3.8 30 156-185 34-63 (63)
13 2wt7_B Transcription factor MA 71.8 3.6 0.00012 35.8 4.1 36 158-193 54-89 (90)
14 1jnm_A Proto-oncogene C-JUN; B 69.4 4.7 0.00016 32.1 4.0 40 158-197 21-60 (62)
15 4dzo_A Mitotic spindle assembl 69.4 6.2 0.00021 35.8 5.3 35 159-193 4-38 (123)
16 3s9g_A Protein hexim1; cyclin 69.1 3.3 0.00011 36.8 3.3 20 160-179 66-85 (104)
17 1hjb_A Ccaat/enhancer binding 68.7 9.6 0.00033 32.9 6.1 38 161-198 38-75 (87)
18 1hjb_A Ccaat/enhancer binding 65.5 5 0.00017 34.6 3.7 29 159-187 50-78 (87)
19 1t6f_A Geminin; coiled-coil, c 64.8 4.4 0.00015 30.0 2.7 24 158-181 13-36 (37)
20 3oja_A Leucine-rich immune mol 64.4 14 0.00046 39.0 7.5 45 159-203 435-479 (487)
21 3hnw_A Uncharacterized protein 62.8 17 0.00058 33.5 6.9 41 159-199 89-129 (138)
22 1t2k_D Cyclic-AMP-dependent tr 60.8 8.9 0.0003 30.3 4.1 26 157-182 34-59 (61)
23 1dh3_A Transcription factor CR 58.5 11 0.00038 29.6 4.3 33 157-189 20-52 (55)
24 1gu4_A CAAT/enhancer binding p 56.8 12 0.0004 31.7 4.3 37 161-197 38-74 (78)
25 2w6b_A RHO guanine nucleotide 54.5 40 0.0014 27.1 6.7 37 160-196 11-47 (56)
26 2oa5_A Hypothetical protein BQ 54.1 7 0.00024 35.2 2.7 23 159-181 8-30 (110)
27 2oc5_A Hypothetical protein; D 54.1 13 0.00046 36.8 4.9 46 157-202 169-215 (244)
28 3m91_A Proteasome-associated A 53.8 45 0.0015 26.2 6.9 41 159-199 9-49 (51)
29 3q8t_A Beclin-1; autophagy, AT 53.0 49 0.0017 28.6 7.8 43 161-203 34-76 (96)
30 1gu4_A CAAT/enhancer binding p 52.9 6 0.0002 33.5 1.9 26 160-185 51-76 (78)
31 3a7p_A Autophagy protein 16; c 50.8 40 0.0014 31.9 7.3 41 159-199 68-115 (152)
32 1wrd_A TOM1, target of MYB pro 50.7 39 0.0013 29.5 6.9 26 160-185 7-32 (103)
33 1gd2_E Transcription factor PA 49.9 15 0.00052 30.5 3.9 29 160-188 37-65 (70)
34 2yy0_A C-MYC-binding protein; 49.6 14 0.00047 29.1 3.4 26 157-182 24-49 (53)
35 2dgc_A Protein (GCN4); basic d 49.1 23 0.00077 28.6 4.7 30 160-189 31-60 (63)
36 3l4f_A RHO guanine nucleotide 48.8 58 0.002 26.6 7.0 43 162-204 10-52 (61)
37 2wt7_A Proto-oncogene protein 47.5 22 0.00077 28.3 4.4 27 157-183 35-61 (63)
38 2jee_A YIIU; FTSZ, septum, coi 45.3 77 0.0026 27.1 7.6 43 160-202 21-63 (81)
39 2xdj_A Uncharacterized protein 44.6 64 0.0022 27.4 7.1 42 161-202 22-63 (83)
40 3a5t_A Transcription factor MA 44.0 0.29 9.7E-06 43.9 -7.9 37 162-198 68-104 (107)
41 4etp_A Kinesin-like protein KA 42.7 39 0.0013 35.8 6.7 42 160-201 4-45 (403)
42 2c9l_Y EB1, zebra, BZLF1 trans 41.2 29 0.001 27.9 4.1 18 170-187 33-50 (63)
43 2yy0_A C-MYC-binding protein; 41.2 45 0.0015 26.1 5.2 28 160-187 20-47 (53)
44 1wmi_B RELB, hypothetical prot 40.1 14 0.00048 30.2 2.2 20 164-183 9-28 (67)
45 3n7n_E Monopolin complex subun 40.1 6 0.00021 34.8 0.0 25 157-181 48-72 (95)
46 3mud_A DNA repair protein XRCC 39.8 27 0.00091 33.8 4.4 32 159-190 142-173 (175)
47 3a7o_A Autophagy protein 16; c 39.5 65 0.0022 27.1 6.1 40 160-199 19-58 (75)
48 1zxa_A CGMP-dependent protein 38.1 37 0.0013 28.1 4.4 27 160-186 26-52 (67)
49 1jnm_A Proto-oncogene C-JUN; B 37.7 14 0.00047 29.4 1.8 26 158-183 35-60 (62)
50 3m9b_A Proteasome-associated A 36.5 33 0.0011 34.8 4.6 40 160-199 55-94 (251)
51 4h22_A Leucine-rich repeat fli 36.4 78 0.0027 28.2 6.5 24 174-197 52-75 (103)
52 3m9b_A Proteasome-associated A 36.1 23 0.0008 35.8 3.5 32 168-199 56-87 (251)
53 1lwu_C Fibrinogen gamma chain; 35.7 77 0.0026 33.0 7.4 44 159-202 12-55 (323)
54 3q4f_C DNA repair protein XRCC 34.6 27 0.00091 34.0 3.5 21 160-180 162-182 (186)
55 1wt6_A Myotonin-protein kinase 33.7 97 0.0033 26.6 6.4 38 162-199 27-64 (81)
56 1uii_A Geminin; human, DNA rep 33.7 50 0.0017 28.4 4.7 27 160-186 47-73 (83)
57 2wuj_A Septum site-determining 33.4 33 0.0011 27.0 3.3 30 157-186 25-54 (57)
58 3mtu_E Head morphogenesis prot 33.1 60 0.0021 27.6 5.0 34 157-190 42-75 (77)
59 2efr_A General control protein 31.6 1E+02 0.0036 29.0 6.9 40 160-199 106-145 (155)
60 2wg5_A General control protein 31.3 36 0.0012 29.9 3.5 22 161-182 9-30 (109)
61 2z5i_A TM, general control pro 30.6 41 0.0014 26.3 3.4 32 159-190 19-50 (52)
62 1am9_A Srebp-1A, protein (ster 30.4 49 0.0017 27.6 4.1 25 160-184 51-75 (82)
63 3v86_A De novo design helix; c 28.6 47 0.0016 22.7 2.9 22 157-178 5-26 (27)
64 2xdj_A Uncharacterized protein 28.6 1.3E+02 0.0043 25.6 6.3 43 159-201 27-69 (83)
65 3u06_A Protein claret segregat 28.1 1.1E+02 0.0037 32.6 7.2 36 162-197 6-41 (412)
66 1oxz_A ADP-ribosylation factor 27.2 1.4E+02 0.0048 28.8 7.2 25 160-184 70-94 (186)
67 2wvr_A Geminin; DNA replicatio 27.1 1.4E+02 0.0046 29.6 7.0 26 160-185 116-141 (209)
68 1nkp_B MAX protein, MYC proto- 26.8 46 0.0016 27.5 3.3 9 123-131 16-24 (83)
69 1naf_A ADP-ribosylation factor 25.8 1.4E+02 0.0047 28.2 6.7 43 160-202 54-113 (158)
70 3bas_A Myosin heavy chain, str 25.8 1.5E+02 0.0052 25.0 6.4 37 160-196 22-58 (89)
71 3hnw_A Uncharacterized protein 25.3 1.8E+02 0.0061 26.6 7.2 40 160-199 83-122 (138)
72 1o3x_A ADP-ribosylation factor 24.8 1.6E+02 0.0056 27.0 6.8 26 160-185 45-70 (140)
73 3o0z_A RHO-associated protein 24.6 2.2E+02 0.0075 27.3 7.8 33 161-193 99-138 (168)
74 3iox_A AGI/II, PA; alpha helix 24.0 1.7E+02 0.0059 32.3 7.8 27 160-186 10-36 (497)
75 3f6n_A Virion-associated prote 23.8 1E+02 0.0036 28.3 5.2 32 160-191 3-34 (129)
76 3oja_B Anopheles plasmodium-re 23.8 1.6E+02 0.0054 31.4 7.6 36 161-196 511-546 (597)
77 2oxj_A Hybrid alpha/beta pepti 23.7 1.1E+02 0.0037 22.4 4.2 22 162-183 11-32 (34)
78 1p9i_A Cortexillin I/GCN4 hybr 23.2 73 0.0025 22.4 3.1 23 164-186 4-26 (31)
79 4etp_A Kinesin-like protein KA 22.8 1.3E+02 0.0046 31.7 6.7 43 160-202 11-56 (403)
80 3w03_C DNA repair protein XRCC 22.2 88 0.003 30.3 4.7 26 160-185 153-178 (184)
81 2wg5_A General control protein 21.9 64 0.0022 28.3 3.4 19 178-196 12-30 (109)
82 3u06_A Protein claret segregat 21.8 1.4E+02 0.0049 31.7 6.7 38 157-194 8-45 (412)
83 3sjb_C Golgi to ER traffic pro 21.5 1.9E+02 0.0064 25.4 6.1 39 160-198 24-74 (93)
84 2oqq_A Transcription factor HY 21.4 1.1E+02 0.0038 23.3 4.1 23 160-182 18-40 (42)
85 1go4_E MAD1 (mitotic arrest de 21.4 1.1E+02 0.0037 27.1 4.7 24 160-183 13-36 (100)
86 3sja_C Golgi to ER traffic pro 21.2 1.8E+02 0.0062 23.9 5.6 37 160-196 7-55 (65)
87 1nlw_A MAD protein, MAX dimeri 21.0 79 0.0027 26.4 3.6 20 163-182 58-77 (80)
88 2zqm_A Prefoldin beta subunit 20.5 1.6E+02 0.0055 25.0 5.6 43 160-202 71-113 (117)
89 3s9g_A Protein hexim1; cyclin 20.4 2.8E+02 0.0095 24.7 7.0 38 162-199 40-77 (104)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.98 E-value=1.8e-33 Score=237.26 Aligned_cols=74 Identities=53% Similarity=1.115 Sum_probs=71.5
Q ss_pred EEEEEecCCCCCCCccchhhcccccccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCc
Q 007099 347 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 421 (618)
Q Consensus 347 rvsv~~~se~~~~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~~gCparKqVQR~~~D~~i~~~tY~G~HnH~~P~ 421 (618)
||+|++.++..+++|||+|||||||.|||+++||+|||||+ .+|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 79999999999999999999999999999999999999998 599999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=3.7e-33 Score=236.31 Aligned_cols=75 Identities=55% Similarity=1.051 Sum_probs=68.7
Q ss_pred eEEEEEecCCCCCCCccchhhcccccccCCCCCCccccccccCCCCccccceeeecCCCcEEEEEecccCCCCCCc
Q 007099 346 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 421 (618)
Q Consensus 346 ~rvsv~~~se~~~~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~~gCparKqVQR~~~D~~i~~~tY~G~HnH~~P~ 421 (618)
.+|+|+++++.++++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 368899999999999999999999999999999999999999 699999999999999999999999999999873
No 3
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=92.44 E-value=0.082 Score=45.17 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.++..+++||.++++||+.|+.|++++. ||..++++
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~--------~laevl~~ 76 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHVQ--------YMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 3677889999999999999999999874 45555553
No 4
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=86.48 E-value=0.56 Score=40.39 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
.++..++.|+.++++||++||.+-+++
T Consensus 45 ~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 45 KEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888877765
No 5
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=85.63 E-value=0.8 Score=39.46 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
++..|+.|+..+++||++||.+.+++
T Consensus 54 ~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666554
No 6
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=82.65 E-value=0.75 Score=45.99 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=19.3
Q ss_pred ccchhhHhHH---HHHHHHHHhHHHHHHHHHHHH
Q 007099 153 DEKRTKIELT---QLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 153 ~d~~~k~ELa---~LQaELeRVkEENqRLK~MLs 183 (618)
|+++.|.|++ ....+++++++||+|||.+|+
T Consensus 27 eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 27 ENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555444 444556667778888887765
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.92 E-value=3 Score=33.08 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=35.3
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
.|..+..|+.+.+.+..||..|+.-+..+......|...|+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34478899999999999999999999999998888887764
No 8
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=79.79 E-value=1.5 Score=43.17 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
++..|+.|+.++++||++||.+.+++. +|..++.+
T Consensus 123 ~ie~l~eEi~~LkeEn~eLkeLae~~q--------~la~vi~~ 157 (209)
T 2wvr_A 123 EIEQKDNEIARLKKENKELAEVAEHVQ--------YMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 556777777788888888887777652 45666555
No 9
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.65 E-value=7.1 Score=31.28 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=33.4
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
.+..+..|+.|.+.+..||..|+.-++++...+..|...|
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999999988888887777554
No 10
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.03 E-value=8.2 Score=31.05 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=32.3
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
|.+...|+.|.+.+..||..|+.-++++..-+..|..-|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477889999999999999999999888888887765443
No 11
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=72.33 E-value=1.4 Score=36.89 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=32.9
Q ss_pred CCCCccchhhcccccccCCCCCCccccccccC--CCCccccceeeecCCCcEEEEEecccCCCCCC
Q 007099 357 PMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNHPLP 420 (618)
Q Consensus 357 ~~~~DGy~WRKYGQK~ikgn~~pRsYYRCt~~--~gCparKqVQR~~~D~~i~~~tY~G~HnH~~P 420 (618)
-++-|||...+--+ . ..+.|.||+.. .+|.|+=.... ++ +...+.|||+..
T Consensus 22 ~Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCC
T ss_pred EEEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCc
Confidence 35679998775321 1 24689999973 48999855542 22 224688999743
No 12
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.19 E-value=3.4 Score=33.30 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.6
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 156 RTKIELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 156 ~~k~ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
..+.+...|+.++.++..|++.||.||-+|
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344577899999999999999999999764
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=71.75 E-value=3.6 Score=35.84 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=32.1
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQ 193 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQ 193 (618)
+.|...|+.|++++++||.+++.=++.+-..|.+|+
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999999885
No 14
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.39 E-value=4.7 Score=32.10 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=31.2
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
+..+..|+.+.+.+..||..|+.-++++......|...|+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999888888777766554
No 15
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=69.38 E-value=6.2 Score=35.82 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQ 193 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQ 193 (618)
.|++.||+|++....-|+|||++-.+=...|..-=
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999888777776543
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.10 E-value=3.3 Score=36.78 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLR 179 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK 179 (618)
.+..|++||+|++.||++|+
T Consensus 66 ~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999997
No 17
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.69 E-value=9.6 Score=32.87 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
...++.+...+.+||.+||.-+.++......|..-|+.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999988888866553
No 18
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.53 E-value=5 Score=34.63 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtk 187 (618)
.|...|++|++.++.|...||.||.++-.
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 46688999999999999999999887543
No 19
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=64.80 E-value=4.4 Score=29.98 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.4
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDM 181 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~M 181 (618)
-.++.+-++|+.++++||..|+++
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhh
Confidence 347888999999999999999863
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.41 E-value=14 Score=38.96 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQ 203 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQq 203 (618)
.+....+.|.++++|||.||+..|.++...-..-...+.+++++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 355677778888889999999988887776666665666666654
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.75 E-value=17 Score=33.47 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.|+..|+.||...+++++.++.-++++.+.+++||.++..+
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666677777777777777777777777777766
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.82 E-value=8.9 Score=30.34 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.5
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~ML 182 (618)
.+.+...|+.|+..+.+|+..||.+|
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577899999999999999999987
No 23
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.52 E-value=11 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=27.9
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNY 189 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknY 189 (618)
.+.-+..|..++..+.+||..|+.-|+.+...|
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345688999999999999999999988887655
No 24
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.81 E-value=12 Score=31.72 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
...++.+...+..||.+|+.-+.++......|..-|+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999988888777775443
No 25
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=54.47 E-value=40 Score=27.07 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
-.=+|+-|+.+++.||++|+..|++=.+.-..|-.=+
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999988777666665433
No 26
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=54.14 E-value=7 Score=35.22 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDM 181 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~M 181 (618)
.-++.|.+||.|++-||+.||.-
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkk 30 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQK 30 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999953
No 27
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=54.12 E-value=13 Score=36.82 Aligned_cols=46 Identities=37% Similarity=0.430 Sum_probs=38.2
Q ss_pred hhHhHHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRL-RDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRL-K~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.|.-++..++||++++.||--| +.||+||..+-..|+|-=.++|..
T Consensus 169 Lk~~f~~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~Mekealved 215 (244)
T 2oc5_A 169 LKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIED 215 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3456789999999999999876 799999999999999876655443
No 28
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=53.81 E-value=45 Score=26.20 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
..+..|+.++..+.+-|+||-.+|.+--..-..|.-++-.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999998888777777766543
No 29
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=53.00 E-value=49 Score=28.64 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQ 203 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQq 203 (618)
-+.|..||..+.+|=++|..==.+..+.||+++.+++...-+.
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~ 76 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDEL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666677889999999998774443
No 30
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.89 E-value=6 Score=33.48 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
|...|+.|+..+..|...||.||.++
T Consensus 51 eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56778888888888888888877654
No 31
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.79 E-value=40 Score=31.91 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHhHHHHHHHH-------HHHHHHHHhHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLR-------DMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK-------~MLsqVtknYnALQmqL~~l 199 (618)
.++..|+.|+..++.+.+.|+ ..++.|..-|-+||.||..+
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888887 67888999999999998644
No 32
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=50.74 E-value=39 Score=29.50 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
+++.++.||++|+.==+-|.+||+..
T Consensus 7 q~~k~~~el~~v~~n~~lL~EML~~~ 32 (103)
T 1wrd_A 7 QIGKLRSELEMVSGNVRVMSEMLTEL 32 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999853
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=49.92 E-value=15 Score=30.46 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNN 188 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtkn 188 (618)
++..|+.+...+..||+.||..+..+...
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667777777777666544
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.61 E-value=14 Score=29.10 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=14.8
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~ML 182 (618)
.+.|++.||.+++.++++++.|+.=|
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666555544
No 35
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=49.14 E-value=23 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNY 189 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknY 189 (618)
.+..|+.+++.+..||..|+.-++++..-|
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999988777665443
No 36
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=48.76 E-value=58 Score=26.60 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQ 204 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQqq 204 (618)
=+|+-|+..+++||++++..|++.-+-=..|..=+-.+.+|..
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4688999999999999999999999888888877777766643
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.50 E-value=22 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLs 183 (618)
.+.+...|+.|+..+.+|...|+.||.
T Consensus 35 L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 35 LEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778899999999999999999985
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.31 E-value=77 Score=27.14 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.+.-||.|++++|++|..|..=..++...--+|....-.+-++
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5678999999999999998887777666666666665555333
No 39
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.64 E-value=64 Score=27.43 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
+..|+..|+.++.|..+||+.+++....-+.|+.+--++.++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888889999999999999998887777777666555443
No 40
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=43.97 E-value=0.29 Score=43.90 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~ 198 (618)
..|+.|++++++||.+|+.=++.+-..|.+|+.++..
T Consensus 68 ~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~s 104 (107)
T 3a5t_A 68 AELQQEVEKLASENASMKLELDALRSKYEALQNFART 104 (107)
T ss_dssp TTTSSTTTTTTSTTSHHHHTTTSSSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999976644
No 41
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.71 E-value=39 Score=35.80 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQ 201 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQ 201 (618)
++++|+.||.++++|.+.|..-+.++...+..|+.+|....+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666655433
No 42
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=41.22 E-value=29 Score=27.91 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 007099 170 QMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 170 RVkEENqRLK~MLsqVtk 187 (618)
--.+||.|||-++.|+|-
T Consensus 33 aks~en~rlr~l~kqmcp 50 (63)
T 2c9l_Y 33 AKSSENDRLRLLLKQMCP 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHCT
T ss_pred hhcccchHHHHHHHHhCC
Confidence 346799999988887763
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.21 E-value=45 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTN 187 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtk 187 (618)
+...|+.|+.+++.++..|+.-+.+++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888877777776666554
No 44
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=40.09 E-value=14 Score=30.24 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 007099 164 LQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 164 LQaELeRVkEENqRLK~MLs 183 (618)
+-.||+|+|.|-|||-.||=
T Consensus 9 vl~ELeRlkveiQRLE~ml~ 28 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAMLM 28 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55799999999999999974
No 45
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=40.06 E-value=6 Score=34.79 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDM 181 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~M 181 (618)
.+.++..|-.||..++.||.+||++
T Consensus 48 LQrQv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 48 LQRQIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5558899999999999999999965
No 46
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=39.80 E-value=27 Score=33.76 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYN 190 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYn 190 (618)
.++..|+.||.+.+++|+.+..+|+|....-+
T Consensus 142 keiD~LEDeL~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 142 KSIDDLEEKVAHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999999998776544
No 47
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=39.51 E-value=65 Score=27.15 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.++.||.||..--.|-.+|++.|.-=.++|-.|---++.+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 7899999999999999999999999999998887776543
No 48
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.12 E-value=37 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVT 186 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVt 186 (618)
-+..|+.+|+.-.+|++.||.-|+++.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998887754
No 49
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.66 E-value=14 Score=29.36 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=18.6
Q ss_pred hHhHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 158 KIELTQLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 158 k~ELa~LQaELeRVkEENqRLK~MLs 183 (618)
+.+...|+.|+..+.+|+..||.||-
T Consensus 35 ~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 35 KAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999998874
No 50
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.55 E-value=33 Score=34.83 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
.+..|+.++..+.+.|++|+..|.+..+....|+.++-.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999998765
No 51
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.43 E-value=78 Score=28.23 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 174 ENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 174 ENqRLK~MLsqVtknYnALQmqL~ 197 (618)
|++....=+++....+..|+.+|-
T Consensus 52 e~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 52 QYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443
No 52
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.08 E-value=23 Score=35.85 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 168 LQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 168 LeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
++++..++..|......+....+.|+.++..+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~L 87 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLAL 87 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666665544
No 53
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.69 E-value=77 Score=33.02 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
.|+..|+.-|.+..++-+.|+.+|.........|+.++..++++
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888889999999999999999999999888777554
No 54
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=34.61 E-value=27 Score=34.02 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRD 180 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~ 180 (618)
.++.||+|-+.+.+||+||..
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999974
No 55
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.72 E-value=97 Score=26.59 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
..+++||.+|++.|.-+-.=|-.....+..|+.++-.+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998888888999999999887654
No 56
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.67 E-value=50 Score=28.43 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVT 186 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVt 186 (618)
|...|..+++...+|+..||.|++++.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777776654
No 57
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=33.39 E-value=33 Score=27.02 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=20.7
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVT 186 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVt 186 (618)
...=|..+..+++++.+||+.||.-|.++.
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333567788888888888888887776553
No 58
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=33.07 E-value=60 Score=27.60 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=26.8
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYN 190 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYn 190 (618)
.+.++.-|..+|..-|++|+.+..+|++....-+
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELn 75 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 3446778888888999999999999988876544
No 59
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=31.57 E-value=1e+02 Score=28.99 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
++..|..+|...++.++.+..+|+++....+.++..|..+
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 6677888888899999999999999999999998888765
No 60
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=31.34 E-value=36 Score=29.91 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~ML 182 (618)
+.+|++|+.++++|.++||+-|
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel 30 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEV 30 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777766666666433
No 61
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.64 E-value=41 Score=26.27 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYN 190 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYn 190 (618)
.++..|..||..-+++++.+..+|++.-..++
T Consensus 19 k~ID~LEdeL~~eKek~~~i~~eLD~tl~el~ 50 (52)
T 2z5i_A 19 KLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 47788999999999999999999999765544
No 62
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.43 E-value=49 Score=27.57 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQ 184 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsq 184 (618)
=+..|+.++.++.+||..|+..+.+
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999986654
No 63
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.61 E-value=47 Score=22.71 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=13.7
Q ss_pred hhHhHHHHHHHHHHhHHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRL 178 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRL 178 (618)
.|.|...|+.|.+-++.|-+-|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4556666666666666665555
No 64
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.57 E-value=1.3e+02 Score=25.65 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 159 IELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQ 201 (618)
Q Consensus 159 ~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQ 201 (618)
..|..|+.|+.+++=.++.+.--|+++.+.-..++..|-..+.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999998888888888888877754443
No 65
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.08 E-value=1.1e+02 Score=32.58 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHII 197 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~ 197 (618)
..|++||.+++++.+.|+.-+.+....+..|..+|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 66
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=27.24 E-value=1.4e+02 Score=28.76 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQ 184 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsq 184 (618)
.++.+..||++|+.==+-|.+||+.
T Consensus 70 ~~~k~~~eLe~V~~nv~LL~EML~~ 94 (186)
T 1oxz_A 70 KISKRVNAIEEVNNNVKLLTEMVMS 94 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999995
No 67
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.08 E-value=1.4e+02 Score=29.65 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
|...|..+++...+|..+||.|+.++
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666554
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.84 E-value=46 Score=27.47 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=4.6
Q ss_pred ccccccccc
Q 007099 123 DVNTGLHLL 131 (618)
Q Consensus 123 ~VNtGL~Ll 131 (618)
.||.++.-|
T Consensus 16 ~in~~f~~L 24 (83)
T 1nkp_B 16 HIKDSFHSL 24 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 356555443
No 69
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=25.84 E-value=1.4e+02 Score=28.17 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQ-----------------VTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsq-----------------VtknYnALQmqL~~lMQQ 202 (618)
.++.+..||++|+.==+-|.+||+. +...|..+|-.|+.+...
T Consensus 54 ~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 54 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999995 455556666666655543
No 70
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.82 E-value=1.5e+02 Score=25.01 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
++..|+..|.+....=+.|..-..++...++.|+.++
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql 58 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSM 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555566666666777777777764
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.27 E-value=1.8e+02 Score=26.65 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
++..+..|+..++.|...++.=++.+.+.+..|+-.+-.+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666666666666666544
No 72
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=24.77 E-value=1.6e+02 Score=27.01 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
.++.+..||++|+.==+-|.+||+..
T Consensus 45 ~~~k~~~eLe~v~~n~~LL~EML~~~ 70 (140)
T 1o3x_A 45 KISKRVNAIEEVNNNVKLLTEMVMSH 70 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999999964
No 73
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.57 E-value=2.2e+02 Score=27.28 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=25.8
Q ss_pred HHHHHHHHHHh-------HHHHHHHHHHHHHHHHhHHHHH
Q 007099 161 LTQLQVELQQM-------NTENQRLRDMLSQVTNNYNALQ 193 (618)
Q Consensus 161 La~LQaELeRV-------kEENqRLK~MLsqVtknYnALQ 193 (618)
+..|+.||+|+ ..||++|-+.|+.+.+.+..|.
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555554 5599999999999999999998
No 74
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.95 E-value=1.7e+02 Score=32.32 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVT 186 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVt 186 (618)
+|+.-|.||.||+..|+.+|.-.++-.
T Consensus 10 ~la~yq~elarvqkana~aka~Ye~~~ 36 (497)
T 3iox_A 10 KLTAYQTELARVQKANADAKAAYEAAV 36 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443333
No 75
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=23.83 E-value=1e+02 Score=28.30 Aligned_cols=32 Identities=13% Similarity=0.324 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNA 191 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnA 191 (618)
-|+.+++|++++.+|=+.|+.|+.+|-++-.+
T Consensus 3 nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999888766
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.81 E-value=1.6e+02 Score=31.41 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007099 161 LTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 161 La~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL 196 (618)
+..++.+......|+++++.=.++..+.|..|+...
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQEN 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhh
Confidence 334444444444444555544444445555444333
No 77
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.71 E-value=1.1e+02 Score=22.45 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLs 183 (618)
..|-.|=..+..|..|||.||.
T Consensus 11 EeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 11 XELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhHHHHHHHHHHHHh
Confidence 4555666677788889999885
No 78
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=23.23 E-value=73 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 007099 164 LQVELQQMNTENQRLRDMLSQVT 186 (618)
Q Consensus 164 LQaELeRVkEENqRLK~MLsqVt 186 (618)
|.+=|..+..||++||.-++++.
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566678999987777654
No 79
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.76 E-value=1.3e+02 Score=31.69 Aligned_cols=43 Identities=5% Similarity=0.111 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNA---LQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnA---LQmqL~~lMQQ 202 (618)
|+..|+.|++++.++.++|+.-|.++...|.. ++.+|..-+|.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555554444 33344444444
No 80
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.17 E-value=88 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQV 185 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqV 185 (618)
....|+++..++.+||+||+.=.+++
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888544443
No 81
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.86 E-value=64 Score=28.26 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 007099 178 LRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 178 LK~MLsqVtknYnALQmqL 196 (618)
|+..+.++.+.+..|+-.+
T Consensus 12 l~~~~~~l~~~i~~lkeel 30 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEV 30 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455444
No 82
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.78 E-value=1.4e+02 Score=31.68 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=24.6
Q ss_pred hhHhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 007099 157 TKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQM 194 (618)
Q Consensus 157 ~k~ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQm 194 (618)
.+.||..|+++++.+.+++++++.-|.++...|...++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 45 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNM 45 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777776666666666655443
No 83
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.47 E-value=1.9e+02 Score=25.38 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhHHHHH------------HHHHHHHHHHHhHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQ------------RLRDMLSQVTNNYNALQMHIIA 198 (618)
Q Consensus 160 ELa~LQaELeRVkEENq------------RLK~MLsqVtknYnALQmqL~~ 198 (618)
+...|+.|+-+++.|+. ||+.=++.+...|..|...|..
T Consensus 24 ~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888885 8999999999999999887753
No 84
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.40 E-value=1.1e+02 Score=23.32 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~ML 182 (618)
-.+.|.+-+.-+..||+-||.+|
T Consensus 18 ~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 34667777777888999888776
No 85
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.37 E-value=1.1e+02 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLS 183 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLs 183 (618)
++..|+.|++.++.||.|||.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888776554
No 86
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.20 E-value=1.8e+02 Score=23.95 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhHHHHH------------HHHHHHHHHHHhHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQ------------RLRDMLSQVTNNYNALQMHI 196 (618)
Q Consensus 160 ELa~LQaELeRVkEENq------------RLK~MLsqVtknYnALQmqL 196 (618)
+...|+.|+-+++.|+. ||+.=++.+...|..|-..+
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888885 88888999998888887655
No 87
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.04 E-value=79 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=8.5
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 007099 163 QLQVELQQMNTENQRLRDML 182 (618)
Q Consensus 163 ~LQaELeRVkEENqRLK~ML 182 (618)
.++.|+++++.||+-|+.-|
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 88
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.48 E-value=1.6e+02 Score=24.95 Aligned_cols=43 Identities=9% Similarity=0.249 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007099 160 ELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 202 (618)
Q Consensus 160 ELa~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~lMQQ 202 (618)
-+..|...++.+.++-++|..-++.+.+.+..|+.+|..++++
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467888888888999999999999999999999999887654
No 89
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.44 E-value=2.8e+02 Score=24.72 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007099 162 TQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIAL 199 (618)
Q Consensus 162 a~LQaELeRVkEENqRLK~MLsqVtknYnALQmqL~~l 199 (618)
=.|...|+++.+||.|||..-.+.+..-.+|+.-+-.+
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL 77 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRL 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 46888999999999999998777777777777766554
Done!