BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007100
(618 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55C58|VPS16_DICDI Vacuolar protein sorting-associated protein 16 homolog
OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2
Length = 832
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/604 (40%), Positives = 362/604 (59%), Gaps = 33/604 (5%)
Query: 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDML 60
M VSP G +ACF G L++ T+ S+ D A + WCG D V++YW+ +
Sbjct: 223 MVVSPCGKKLACFDTKGTLLILKTDGSTTNPDRMDTKATKSPVLKWCGSDGVMMYWDSI- 281
Query: 61 VMVAPQAEPVQYFY-----------DEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIF 109
+P+ +++ D+P+ L+ E DG+RI+S+++ EF +V T IF
Sbjct: 282 ------KDPILFYFSKGDSWAKFTLDQPVSLVTEIDGLRIISDTTSEFFHKVSDVTIDIF 335
Query: 110 AIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLL 169
IG+TSPA++LYDA DHF +S +ADE++R I L AV CI AAG EF+ Q LL
Sbjct: 336 KIGTTSPASILYDATDHFISKSPQADESIRSINDQLEDAVNDCILAAGFEFNGGEQSKLL 395
Query: 170 RAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINA 229
+AAS+G+ F N+ + MC++LRVLNA R EIGIPLSI+QY + LI RLI+
Sbjct: 396 KAASFGKCFLENYNPSQFVTMCRSLRVLNAVRHHEIGIPLSIKQYYHIGIEELIDRLISR 455
Query: 230 NCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVA 289
HLLA RI +YL + +VV+ HWAC+K+ IPD L +I++ KL+ GIS+A +A
Sbjct: 456 RKHLLAWRICDYLKIKSDVVLNHWACTKVRTD--IPDQELGKIIIKKLESVPGISFANIA 513
Query: 290 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQ 349
+ A +GR KLA L+E+EP++++QVP L+ +GE AL KA ESGDTDLVYLV+ + +
Sbjct: 514 SAAYLAGRSKLATKLLEYEPKAAEQVPPLIKMGESGLALNKAIESGDTDLVYLVLLAMQR 573
Query: 350 KRPALEFFGMIQTRPLACDLFTVYARCYKHEF--LKDFFLSTGQLQEVAFLLWKESWELG 407
P +F + ++ +A DL + K++F L++ + Q +E+ + +E+
Sbjct: 574 SLPLADFLELTFSKVVALDLLISMCK-QKNDFPLLREIYHIKDQSKEMGNIYLQEA---- 628
Query: 408 KNPMASNGSALHGPRIKRIEKA--HSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQ 465
++S+ S L RIK K+ H S+ K+ SK ++ KL +Q ELE + +
Sbjct: 629 ---LSSHPSQLDQ-RIKAYNKSIEHYHHSKDKDDQATSKFIDDQIKLEMLQKELETNLQD 684
Query: 466 AIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSK 525
FV SI+DTI I + + A +++EFKV +KR++W+K+ AL+ DW+ L +FSK
Sbjct: 685 ESFVGISINDTIYKLITMNQPKKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSK 744
Query: 526 EKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDG 585
EK+ PIGY PFVE C+D + EALKYIPK+ D + + Y +IG +EAAD A + K+
Sbjct: 745 EKKSPIGYEPFVEVCLDQKNQIEALKYIPKITDILPKIQFYIQIGYFREAADIAFKEKNF 804
Query: 586 ELLG 589
+LL
Sbjct: 805 DLLN 808
>sp|Q920Q4|VPS16_MOUSE Vacuolar protein sorting-associated protein 16 homolog OS=Mus
musculus GN=Vps16 PE=1 SV=3
Length = 839
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/620 (37%), Positives = 349/620 (56%), Gaps = 25/620 (4%)
Query: 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLY 55
MAVS ++A FT G + + + + + +C PP+Q+ WC +V++
Sbjct: 225 MAVSFTYRYLALFTDTGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVA 284
Query: 56 WNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTS 115
W L++V E +Q+ DE L+PE DGVRI S S+ EFL VP ++E+IF I S +
Sbjct: 285 WERRLMVVGNAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMA 344
Query: 116 PAALLYDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAAS 173
P ALL +A +++ S KADE LR I+ L +AV+ CI+AAGHE Q++LLRAAS
Sbjct: 345 PGALLLEAQKEYEKESQKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKSLLRAAS 404
Query: 174 YGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHL 233
+G+ F F D MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ +
Sbjct: 405 FGKCFLDRFPPDSFVHMCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYP 464
Query: 234 LALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVA 289
LA++I EYL + + ++ HWAC K A + D + + KL G+SY+ +A
Sbjct: 465 LAIQICEYLRLPEVQGVSRILAHWACYKARA-WDMRDEDVARAINQKLGDTPGVSYSDIA 523
Query: 290 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQ 349
A A GR +LA L+E+EPRS +QVPLLL + AL KA ESGDTDLV+ V+ H+
Sbjct: 524 ARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKN 583
Query: 350 KRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKN 409
+ +FF ++ +P+A L+ + + + + LKD + QE+ + S+
Sbjct: 584 ELNRGDFFMTLRNQPMALSLYRQFCKHQELDTLKDLYNQDDNHQELGSFHIRASY----- 638
Query: 410 PMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFV 469
+ + G R+ ++ A F + K + F +KA E+ +LLRIQ LE F+
Sbjct: 639 ---AAEERIEG-RVAALQTAADAFYKAK-NEFAAKATEDQMRLLRIQRRLE-DELGGRFL 692
Query: 470 DSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRP 529
D S+ DT+ T I+ G+++ A ++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+
Sbjct: 693 DLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSKKS 752
Query: 530 PIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLG 589
PIGY PFVE C+ K EA KY + V P ++ +A +G +AA+ A + ++ L
Sbjct: 753 PIGYLPFVEICMKQHNKHEAKKYASR-VGPEQKVKALLLVGDVAQAAEVAIEHRNETELS 811
Query: 590 RLKLTFAQNAAASSIFDTLR 609
L L+ A +I D ++
Sbjct: 812 -LVLSHCTGATDGAIADKIQ 830
>sp|Q9H269|VPS16_HUMAN Vacuolar protein sorting-associated protein 16 homolog OS=Homo
sapiens GN=VPS16 PE=1 SV=2
Length = 839
Score = 362 bits (928), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 226/595 (37%), Positives = 339/595 (56%), Gaps = 24/595 (4%)
Query: 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLY 55
MAVS +A FT G + + + + + +C PP+Q+ WC +V++
Sbjct: 225 MAVSFTYRHLALFTDTGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVA 284
Query: 56 WNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTS 115
W L++V E +Q+ DE L+PE DGVRI S S+ EFL VPA++E+IF I S +
Sbjct: 285 WERRLMVVGDAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMA 344
Query: 116 PAALLYDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAAS 173
P ALL +A +++ S KADE LR I+ L +AV+ CI+AAGHE Q++LLRAAS
Sbjct: 345 PGALLLEAQKEYEKESQKADEYLREIQELGQLTQAVQQCIEAAGHEHQPDMQKSLLRAAS 404
Query: 174 YGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHL 233
+G+ F F D MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ +
Sbjct: 405 FGKCFLDRFPPDSFVHMCQDLRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYP 464
Query: 234 LALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVA 289
LA++I EYL + + ++ HWAC K+ + D + + KL G+SY+ +A
Sbjct: 465 LAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIA 523
Query: 290 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQ 349
A A GR +LA L+E+EPRS +QVPLLL + AL KA ESGDTDLV+ V+ H+
Sbjct: 524 ARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKN 583
Query: 350 KRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKN 409
+ +FF ++ +P+A L+ + + + E LKD + QE+ + S+
Sbjct: 584 ELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASY----- 638
Query: 410 PMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFV 469
+ + G R+ ++ A F + K + F +KA E+ +LLR+Q LE F+
Sbjct: 639 ---AAEERIEG-RVAALQTAADAFYKAK-NEFAAKATEDQMRLLRLQRRLE-DELGGQFL 692
Query: 470 DSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRP 529
D S+ DT+ T I+ G+++ A ++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+
Sbjct: 693 DLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKS 752
Query: 530 PIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKD 584
PIGY PFVE C+ K EA KY + V P ++ +A +G +AAD A + ++
Sbjct: 753 PIGYLPFVEICMKQHNKYEAKKYASR-VGPEQKVKALLLVGDVAQAADVAIEHRN 806
>sp|Q5E9L7|VPS16_BOVIN Vacuolar protein sorting-associated protein 16 homolog OS=Bos
taurus GN=VPS16 PE=2 SV=1
Length = 839
Score = 360 bits (925), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 225/595 (37%), Positives = 338/595 (56%), Gaps = 24/595 (4%)
Query: 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLY 55
MAVS +A FT G + + + + + +C PP+Q+ WC +V++
Sbjct: 225 MAVSFTYRHLALFTDTGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVA 284
Query: 56 WNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTS 115
W L++V E +Q+ DE L+PE DGVR+ S S+ EFL VP ++E+IF I S +
Sbjct: 285 WERRLMVVGDAPESIQFVLDEDSYLVPELDGVRVFSRSTHEFLHEVPVASEEIFKIASMA 344
Query: 116 PAALLYDALDHFDRRSAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAAS 173
P ALL +A +++ S KADE LR I+ LP+AV+ CI+AAGHE Q++LLRAAS
Sbjct: 345 PGALLLEAQKEYEKESQKADEYLREIQELGQLPQAVQQCIEAAGHEHWPDMQKSLLRAAS 404
Query: 174 YGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHL 233
+G+ F F D MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ +
Sbjct: 405 FGKCFLDRFPPDSFVRMCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYP 464
Query: 234 LALRISEYLGMNQ----EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVA 289
LA++I EYL + + ++ HWAC K+ + D + + KL G+SY+ +A
Sbjct: 465 LAIQICEYLRLPEVQGVSRILAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIA 523
Query: 290 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQ 349
A A GR +LA L+E+EPRS +QVPLLL + AL KA ESGDTDLV+ V+ H+
Sbjct: 524 ARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKN 583
Query: 350 KRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKN 409
+ +FF ++ +P+A L+ + + + E LKD + QE+ + S+
Sbjct: 584 ELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASY----- 638
Query: 410 PMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFV 469
+ + G R+ ++ A F + K + F +KA E+ +LLR+Q LE F+
Sbjct: 639 ---AAEERIEG-RVAALQTAADAFYKAK-NEFAAKATEDQMRLLRLQRRLE-DELGGQFL 692
Query: 470 DSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRP 529
D S+ DT+ T I+ G ++ A ++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+
Sbjct: 693 DLSLHDTVTTLILSGQNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKS 752
Query: 530 PIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKD 584
PIGY PFVE C+ K EA KY + V P ++ +A +G +AAD A + ++
Sbjct: 753 PIGYLPFVEICMKQHNKYEAKKYASR-VGPEQKVKALLLVGDVAQAADVAIEHRN 806
>sp|Q9UT38|VPS16_SCHPO Probable vacuolar protein sorting-associated protein 16 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps16 PE=3 SV=1
Length = 835
Score = 311 bits (798), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 192/599 (32%), Positives = 329/599 (54%), Gaps = 22/599 (3%)
Query: 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVID-----ESCESALPPEQIAWCGMDSVLLY 55
+++SPN ++A + G++ V +++FS ++D E++L +Q+AWCG D+V+L
Sbjct: 229 ISISPNARYLALYESVGKVRVISSDFSKELLDLRLPETVAEASL--KQMAWCGNDAVVLV 286
Query: 56 WNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTS 115
++L +V P V Y Y+ ++ E DGVRIL+ S EFL++VPA E IF IGS +
Sbjct: 287 HENLLTLVGPFGGSVPYLYNHTPIVSTEVDGVRILTKDSSEFLRKVPAPLENIFHIGSKT 346
Query: 116 PAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYG 175
P A L +A +S A++ L ++ L AV+ C+ A+ +EF I Q+ LL AAS G
Sbjct: 347 PGAKLVEAFQKMKLKSVFAEKMLLELKDELHDAVDTCVQASLNEFSIEWQKVLLEAASLG 406
Query: 176 QAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLA 235
+ + ++C+ LRVLNAARDP +GI ++ ++Y L LI R + LA
Sbjct: 407 KNSLRMYNHQEYVDVCRELRVLNAARDPNVGIYITHEEYLHLGLERLIQRFSCRQLYGLA 466
Query: 236 LRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKS 295
++ S ++ + + V + WA + I S + P+ +L+ ++ +L K ISY +A A +
Sbjct: 467 VQASMWMQIPCDWVYIQWAQTYIKQS-SEPEEVVLDNIVKRLSSRKYISYEKIARTAYQE 525
Query: 296 GRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALE 355
GR L+ L++ EP + QV LLL++ + AL K E+ D +L+ V+ I Q+
Sbjct: 526 GRLILSTKLLDFEPLAKHQVMLLLNMEAYEQALKKVIETMDNNLIIYVVLQIKQQMAIAS 585
Query: 356 FFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNG 415
FF ++ P A ++ +A+ + L DFF Q +A L +++ +
Sbjct: 586 FFQILNEYPDAVKVYVEFAKKNDRKTLHDFFYQDDNKQGIAVLAVEDTLK---------- 635
Query: 416 SALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISD 475
+A RI ++ A + SE+KE + E K + KLL++Q E FV ++++
Sbjct: 636 TATVNQRITSLKSAAKVCSESKELSLEEKCLGDEIKLLQLQQTYE-DQFTGNFVGLTVNE 694
Query: 476 TIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKE-KRPPIGYR 534
+ I + + A K++++F++ EKR+ WLK+ AL RDW +E+++ +R PIG+
Sbjct: 695 VVVKLIQINQTQRANKLRSDFQIPEKRFAWLKLRALVAIRDWVQIEQWAGSMRRSPIGFE 754
Query: 535 PFVEACVDADEKGEALKYIPKL--VDPRERAEAYARIGMAKEAADAASQAKDGELLGRL 591
PFV + A K EA KYIP+ + +E+ + + ++G K A++ A+++K G +LG L
Sbjct: 755 PFVTEILSAGNKKEAAKYIPRCTQLTTQEKVDMWVQVGDVKSASEEAAKSKSGSVLGDL 813
>sp|Q03308|VPS16_YEAST Vacuolar protein sorting-associated protein 16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS16 PE=1
SV=2
Length = 798
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 151/562 (26%), Positives = 259/562 (46%), Gaps = 42/562 (7%)
Query: 41 PEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLV-LIPECDGVRILSNSSMEFLQ 99
P+ I WCG D+V + D + + P V ++Y + L E DG+++++ + FL
Sbjct: 232 PDDICWCGNDTVACSFEDEIKLYGPDGLYVTFWYPFTVTNLRAEVDGLKVITTEKIYFLS 291
Query: 100 RVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHE 159
RV T IF IGST P A+L D+ + + KA E L+ L K V CI AA E
Sbjct: 292 RVQPQTSNIFRIGSTEPGAMLVDSFSLLEDHAPKAIEILK--NFVLEKGVLDCIAAAIDE 349
Query: 160 FDISRQRTLLRAASYGQAFCS--NFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSL 217
F+ Q+ LL AASYG+A +F C T+++LN R GI L++++Y+ +
Sbjct: 350 FEPKLQKMLLNAASYGKASLQYKSFDASIFVNACNTIKLLNCFR--SFGIFLTVEEYRCI 407
Query: 218 TASVLIGRLINANCHLLALRISEY------LGMNQEVVIMHWACSKITASLAIPDVTLLE 271
+ +I RL+ + + ++I + LG V WA KI S + D LL+
Sbjct: 408 SLKGVIDRLLKYHRYYECIQICKLANERFLLGY----VFTEWAKDKIKGSPDMEDDELLD 463
Query: 272 IL---LDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTAL 328
+ L + + + AVA A GR +L+ L E ++ L ++ ++ AL
Sbjct: 464 KIKSRLSVIDMTDTLQMVAVAKVAYLEGRFQLSRNLALLEKNEEARIEQLYNLDDDSIAL 523
Query: 329 VKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLS 388
+ + + L ++ + +K + ++ L+ Y R K +L DF+
Sbjct: 524 KECIKVQNYSLTISLLIALSKKLTNSQLTKLLIIDMFNNPLYLYYMRMDK-AYLYDFYRQ 582
Query: 389 TGQLQEVAFLLWKESWELGKNPMASNGSALHG--PRIKRIEKAHSLFSETKEHTFESKAA 446
T + ++A +L ++ E +LH P+IK + + SE +T E
Sbjct: 583 TDRFIDLAHVLLQQGKE---------QQSLHSFLPQIKDL-YSQVQNSEVVNNTIEQLQR 632
Query: 447 EEHAKLLRIQHELEVSTKQAI-FVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYW 505
+E KL Q L + AI F + ++ T+ I G + ++ +FK+SEK+ Y
Sbjct: 633 QE--KLWIYQESL--GKRFAISFTNMTLDQTLSKLIETGQDKQVKEIVKKFKISEKKLYH 688
Query: 506 LKVFALATKRDWDALERFSKEKRPPIGYRPF---VEACVDADEKGEALKYIPKLVDPRER 562
LK L + +D L +F++ ++ PIGY PF +++ D+ + IP L +E+
Sbjct: 689 LKCKTLVEAKKFDELLQFAQSRKSPIGYMPFYTYLKSRGHMDKASPYVNMIPGL-SYQEK 747
Query: 563 AEAYARIGMAKEAADAASQAKD 584
+ Y ++A A + KD
Sbjct: 748 KKLYVECRGFRDAIQLAGKEKD 769
>sp|Q11182|VPS16_CAEEL Vacuolar protein sorting-associated protein 16 homolog
OS=Caenorhabditis elegans GN=vps-16 PE=3 SV=2
Length = 852
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 152/630 (24%), Positives = 278/630 (44%), Gaps = 70/630 (11%)
Query: 3 VSPNGNFVACFTHDGRLVVNNTNFSSPV----IDES---CESALPPEQIA------WCGM 49
V N +V C D R + S + ID S C + IA W G
Sbjct: 222 VDSNTKYVKCVVDDARSRIAMMTESGKIQIVSIDLSTCFCTVEITDHDIAKCINFGWVGN 281
Query: 50 DSVLLYWNDMLVM---VAPQAEP---VQYFYDEPLV----LIPECDGVRILSNSSMEFLQ 99
+V + + L++ V+ + +P VQ + E + + E DG+R+ ++ +EF
Sbjct: 282 SAVFVQMSPSLIVFVNVSARRKPGDEVQIY--EKMTANAKISIEPDGIRLFESTQVEF-- 337
Query: 100 RVPASTEQIFAIGSTSP---AALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAA 156
V A++ + A+ + +P A LY A + + + L KA++ CI A
Sbjct: 338 -VEAASREKIAVLNRNPNEDGAHLYKAAQEMSQGTGHNSFAASTVIQDLYKAIDDCISTA 396
Query: 157 GHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEM--CKTLRVLNAARDPEIGIPLSIQQY 214
+ Q+ LL+AA +G A+ +N D + M K +RVLN R GIPL+ +Q+
Sbjct: 397 CDTWQPEEQKLLLKAARFGMAY-TNTTPDTTKLMRAIKEIRVLNELRMVRTGIPLTHRQF 455
Query: 215 KSLTASVLIGRLINANCHLLALRISEYLG----MNQEVVIMHW---ACSKITASLAIPDV 267
+++ + +I RLI+ + +A++++++LG N + V++ W + SK++ S D
Sbjct: 456 RAIGETCVINRLIDMGSYSVAIKVAQWLGGETSENVDRVLLEWVRRSISKVSKSNMKMDQ 515
Query: 268 TLLEILLDKL--KLCK--GISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGE 323
LE L +K+ KL + +S A A A ++ +LA + + E + V +LL + +
Sbjct: 516 PALEALDEKISAKLLQFPHVSIADAARRAIEAKLPELARLFIRRETDDANHVAVLLQLND 575
Query: 324 EDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLK 383
AL KA+ S L++ V+ H+ + I PLA +C + ++
Sbjct: 576 VSAALQKASASQRPQLIHQVVRHLMNSESRSSYELAISRIPLA--------QCLYQDLVR 627
Query: 384 DFFLSTGQLQEVAFLLWKESWELGKNPM----ASNGSALHGPRIKRIEKAHSLFSETKEH 439
+ G L +++ + + + + R+ + +A +
Sbjct: 628 QEGETRGASSRQMLALLEQASDFERQTLFHFDVAETERNPDERLNALRRA-----KDAAK 682
Query: 440 TFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAM-KVKTEFKV 498
+ KA EE + L++ QA D S+ DT+ I + + A + ++K + ++
Sbjct: 683 SMGDKAIEEILNDVSAFAPLQIQRGQA---DMSVRDTV---IEMAHDTAKVAQLKQQARL 736
Query: 499 SEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVD 558
++K+ + LA K + L + +KR PIGY PFV+ACV E KY K+
Sbjct: 737 TDKQVLLWTIEGLAKKGKMEQLFDLA-QKRSPIGYAPFVKACVRYKRLDEIKKYFAKVNG 795
Query: 559 PRERAEAYARIGMAKEAADAASQAKDGELL 588
+ A+ + EAA A +D ++L
Sbjct: 796 YPDLVAAHLAMKNYVEAAKLAYDRRDRDVL 825
>sp|Q60V75|VPS16_CAEBR Vacuolar protein sorting-associated protein 16 homolog
OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1
Length = 858
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 129/496 (26%), Positives = 222/496 (44%), Gaps = 49/496 (9%)
Query: 83 ECDGVRILSNSSMEFLQRVPASTEQIFAIGST--SPAALLYDALDHFDRRSAKADENLRL 140
E DG+R+ ++ +EF++ AS E+I + + A LY A ++ +
Sbjct: 329 EPDGIRLFESTRVEFVE--AASREKIAVLNRSLNEDGAYLYKAAQEMEQGTGHNSFAAST 386
Query: 141 IRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEM--CKTLRVLN 198
+ + KA++ CI A + Q+ LL+AA +G A+ +N D + M K +RVLN
Sbjct: 387 VIQDMYKAIDDCISTACDTWQPEEQKLLLKAARFGMAY-TNTTPDTTKLMRAIKEIRVLN 445
Query: 199 AARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHW- 253
R GIPL+ +QY+ + + +I RLI+ + +A++++++LG + V++ W
Sbjct: 446 ELRMVRTGIPLTHRQYRIIGDTCIINRLIDMGSYSVAIKVAQWLGGENCESVDRVLLEWV 505
Query: 254 --ACSKITASLAIPDVTLLEILLDKL--KLCK--GISYAAVAAHADKSGRRKLAAMLVEH 307
+ SK++ S D LE L +K+ KL + +S A A A ++ +LA + +
Sbjct: 506 RRSISKVSRSNMKMDQPALEALDEKISAKLLQFPHVSMADAARRAIEAKLPELARLFIRR 565
Query: 308 EPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLAC 367
E V +LL + + AL KA S L++ V+ H+ + I PLA
Sbjct: 566 ETDDESHVAVLLQLNDVSAALTKAAASQRPQLIHQVVRHLMTSESRSSYELAISRIPLAQ 625
Query: 368 DLFTVYAR-------CYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHG 420
L+ R + L L E L + E+ +NP
Sbjct: 626 CLYQDLVRQEGETRGISSRQMLA--LLEQASDFERQTLFHFDVAEIERNP---------S 674
Query: 421 PRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTC 480
R+ + +A + + KA EE + L++ QA D S+ DTI
Sbjct: 675 ERLNALRRA-----KDAAKSMGDKAIEEILNDVSAFAPLQIQRGQA---DMSVRDTI--- 723
Query: 481 IVLGNHRAAM-KVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEA 539
I + + A + ++K + ++++K+ + LA K + L + +KR PIGY PFV+A
Sbjct: 724 IEIADDTAKVAQLKQQARLNDKQVLLWTIEGLAKKGKMEQLFDLA-QKRSPIGYAPFVKA 782
Query: 540 CVDADEKGEALKYIPK 555
CV E KY K
Sbjct: 783 CVRYKRNEEVNKYFAK 798
>sp|A2CEZ5|ZN326_DANRE DBIRD complex subunit ZNF326 OS=Danio rerio GN=znf326 PE=2 SV=1
Length = 451
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 437 KEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKV-KTE 495
K HTFE K E+H + L+ +QA F D IS + C+V H+ + K +
Sbjct: 267 KFHTFEDKDIEKHFGSTYHRETLDYIRRQAKFDDKVIS-FLHDCMVNKFHKTVSNLHKLK 325
Query: 496 FKVSEKRWYWLKVFALATKRDW 517
F + W K+ T+ D+
Sbjct: 326 FSCGRSKDEWAKIMEGVTEDDY 347
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 553 IPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGR-LKLTFAQNA 599
+PK D R A+A A+EAA+A K+ LLGR L L +A NA
Sbjct: 752 VPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYASNA 799
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,412,330
Number of Sequences: 539616
Number of extensions: 8431773
Number of successful extensions: 20711
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 20671
Number of HSP's gapped (non-prelim): 33
length of query: 618
length of database: 191,569,459
effective HSP length: 124
effective length of query: 494
effective length of database: 124,657,075
effective search space: 61580595050
effective search space used: 61580595050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)