Query 007100
Match_columns 618
No_of_seqs 137 out of 275
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 96.5 0.18 6.3E-06 61.2 22.8 165 424-592 1090-1257(1630)
2 1b89_A Protein (clathrin heavy 96.2 0.0037 1.3E-07 67.4 5.4 169 424-595 17-187 (449)
3 1xi4_A Clathrin heavy chain; a 95.9 3.5 0.00012 50.4 28.8 302 219-580 988-1304(1630)
4 3mkq_A Coatomer beta'-subunit; 95.3 0.73 2.5E-05 52.3 20.0 110 223-338 659-779 (814)
5 3mkq_A Coatomer beta'-subunit; 94.0 0.19 6.5E-06 57.2 10.9 107 478-586 660-779 (814)
6 2xpi_A Anaphase-promoting comp 90.8 20 0.00067 38.4 28.1 84 219-306 87-174 (597)
7 2xpi_A Anaphase-promoting comp 90.8 20 0.00068 38.4 27.4 105 475-579 446-573 (597)
8 1b89_A Protein (clathrin heavy 89.1 0.67 2.3E-05 49.8 7.5 106 472-582 124-233 (449)
9 3mkq_B Coatomer subunit alpha; 88.0 1.7 5.7E-05 40.7 8.5 90 508-597 54-143 (177)
10 1w3b_A UDP-N-acetylglucosamine 76.3 65 0.0022 32.1 25.1 100 480-579 247-362 (388)
11 1pby_B Quinohemoprotein amine 75.0 6 0.0002 38.6 7.5 63 1-67 246-310 (337)
12 4g26_A Pentatricopeptide repea 71.6 8.3 0.00028 41.8 8.1 86 498-583 102-202 (501)
13 3ro2_A PINS homolog, G-protein 69.0 79 0.0027 29.9 16.7 53 503-555 225-288 (338)
14 3i4r_B Nuclear pore complex pr 67.4 23 0.00078 39.7 10.6 237 308-557 328-611 (644)
15 3hym_B Cell division cycle pro 65.4 95 0.0032 29.5 22.7 103 480-582 169-296 (330)
16 3ow8_A WD repeat-containing pr 65.4 25 0.00086 34.8 9.7 49 1-50 170-218 (321)
17 4aow_A Guanine nucleotide-bind 65.3 29 0.00099 33.7 10.1 63 1-65 221-284 (340)
18 3sf4_A G-protein-signaling mod 65.1 1.1E+02 0.0037 30.1 16.6 44 536-579 273-330 (406)
19 3frx_A Guanine nucleotide-bind 64.6 24 0.00082 34.8 9.4 61 1-63 202-263 (319)
20 4g26_A Pentatricopeptide repea 63.6 6.3 0.00021 42.8 5.1 86 472-557 107-202 (501)
21 3lrv_A PRE-mRNA-splicing facto 63.4 39 0.0013 33.4 10.8 64 1-64 176-241 (343)
22 3zwl_B Eukaryotic translation 60.3 15 0.00051 36.1 6.9 49 1-51 80-128 (369)
23 3zwl_B Eukaryotic translation 59.2 32 0.0011 33.5 9.2 64 1-65 38-103 (369)
24 3mkq_B Coatomer subunit alpha; 58.4 51 0.0017 30.5 9.5 119 219-344 8-138 (177)
25 1gxr_A ESG1, transducin-like e 58.4 28 0.00096 33.6 8.5 49 1-50 57-109 (337)
26 4h5i_A Guanine nucleotide-exch 58.1 9.5 0.00032 38.9 5.0 48 1-48 275-322 (365)
27 3ow8_A WD repeat-containing pr 57.8 27 0.00093 34.5 8.4 98 1-99 128-242 (321)
28 2fo7_A Synthetic consensus TPR 56.9 34 0.0012 27.3 7.6 78 501-578 35-125 (136)
29 3vl1_A 26S proteasome regulato 56.8 36 0.0012 34.3 9.3 48 1-49 145-192 (420)
30 3i5p_A Nucleoporin NUP170; hel 56.7 41 0.0014 36.7 10.0 160 324-499 165-337 (525)
31 2y4t_A DNAJ homolog subfamily 56.3 1.7E+02 0.0058 29.4 21.7 43 537-579 302-352 (450)
32 1pby_B Quinohemoprotein amine 56.2 26 0.00089 33.9 7.8 66 1-69 87-165 (337)
33 1r5m_A SIR4-interacting protei 56.0 20 0.00067 36.0 7.1 55 1-55 155-223 (425)
34 4ery_A WD repeat-containing pr 55.2 40 0.0014 32.6 9.0 48 1-49 29-76 (312)
35 4eqf_A PEX5-related protein; a 54.6 1.2E+02 0.0041 29.7 12.7 82 500-581 212-306 (365)
36 4a11_B DNA excision repair pro 54.3 72 0.0025 31.5 11.0 28 1-28 251-278 (408)
37 1r5m_A SIR4-interacting protei 54.2 26 0.0009 35.0 7.7 48 1-50 114-161 (425)
38 2ojh_A Uncharacterized protein 53.4 80 0.0027 29.3 10.6 52 1-53 47-99 (297)
39 3vl1_A 26S proteasome regulato 52.7 22 0.00074 36.1 6.7 51 1-51 253-303 (420)
40 1pgu_A Actin interacting prote 52.6 36 0.0012 36.3 8.8 48 1-48 494-541 (615)
41 1erj_A Transcriptional repress 51.8 49 0.0017 33.5 9.4 46 1-47 129-174 (393)
42 3f3f_A Nucleoporin SEH1; struc 51.7 45 0.0015 31.9 8.6 47 1-48 17-67 (351)
43 3lvg_A Clathrin heavy chain 1; 50.9 0.33 1.1E-05 52.7 -7.6 90 506-596 121-210 (624)
44 1gxr_A ESG1, transducin-like e 50.8 49 0.0017 31.7 8.8 48 1-50 230-277 (337)
45 3ieg_A DNAJ homolog subfamily 49.7 1.8E+02 0.0061 27.7 18.4 20 286-305 7-26 (359)
46 3v7d_B Cell division control p 49.6 44 0.0015 34.4 8.7 99 1-100 316-427 (464)
47 3uq3_A Heat shock protein STI1 49.3 1.5E+02 0.0051 26.7 13.1 82 500-581 138-232 (258)
48 4aez_A CDC20, WD repeat-contai 49.1 50 0.0017 33.4 8.9 48 1-49 140-187 (401)
49 3gyz_A Chaperone protein IPGC; 48.7 1.2E+02 0.0043 26.4 10.4 125 473-612 11-150 (151)
50 4h5i_A Guanine nucleotide-exch 48.4 18 0.00061 36.8 5.2 45 1-47 139-185 (365)
51 3e5z_A Putative gluconolactona 48.3 1E+02 0.0035 29.4 10.7 68 1-70 177-249 (296)
52 1na0_A Designed protein CTPR3; 48.2 96 0.0033 24.2 9.2 76 504-579 12-100 (125)
53 2aq5_A Coronin-1A; WD40 repeat 47.8 31 0.0011 34.9 7.1 55 1-55 182-237 (402)
54 1elw_A TPR1-domain of HOP; HOP 47.3 62 0.0021 25.1 7.6 78 502-579 5-95 (118)
55 2pm9_A Protein WEB1, protein t 46.5 62 0.0021 32.3 9.1 47 1-48 73-123 (416)
56 4a1s_A PINS, partner of inscut 46.5 2.3E+02 0.0078 28.0 19.8 78 503-580 265-367 (411)
57 3upv_A Heat shock protein STI1 46.3 61 0.0021 26.4 7.5 78 504-581 7-97 (126)
58 3dw8_B Serine/threonine-protei 46.1 1.1E+02 0.0037 30.9 10.9 33 1-34 291-324 (447)
59 1k8k_C P40, ARP2/3 complex 41 45.9 39 0.0013 33.2 7.3 49 1-49 102-153 (372)
60 3u4y_A Uncharacterized protein 45.8 57 0.002 31.5 8.4 65 1-67 45-117 (331)
61 3vgz_A Uncharacterized protein 45.3 62 0.0021 31.4 8.6 102 1-102 190-311 (353)
62 1ri6_A Putative isomerase YBHE 45.2 83 0.0028 30.2 9.5 65 1-65 134-207 (343)
63 1hh8_A P67PHOX, NCF-2, neutrop 44.9 56 0.0019 29.3 7.7 99 482-580 18-145 (213)
64 2ho1_A Type 4 fimbrial biogene 44.7 1.3E+02 0.0046 27.3 10.6 103 479-581 80-200 (252)
65 3u4y_A Uncharacterized protein 44.5 1.3E+02 0.0045 28.8 10.9 64 1-66 181-251 (331)
66 3as5_A MAMA; tetratricopeptide 44.5 79 0.0027 26.8 8.4 80 501-580 76-168 (186)
67 3vgz_A Uncharacterized protein 44.0 69 0.0024 31.1 8.7 64 1-66 46-119 (353)
68 2vyi_A SGTA protein; chaperone 43.6 1.2E+02 0.004 23.9 9.6 78 502-579 13-103 (131)
69 3mmy_A MRNA export factor; mRN 43.2 19 0.00066 35.2 4.4 49 1-50 279-327 (368)
70 3mkr_A Coatomer subunit epsilo 42.9 2.4E+02 0.0081 27.2 19.4 51 289-339 6-65 (291)
71 2pm9_A Protein WEB1, protein t 42.9 60 0.0021 32.4 8.3 65 1-65 171-247 (416)
72 3vu4_A KMHSV2; beta-propeller 42.6 90 0.0031 31.1 9.5 50 1-50 201-252 (355)
73 3mkr_A Coatomer subunit epsilo 42.5 2.4E+02 0.0082 27.2 12.9 133 446-581 6-155 (291)
74 1pgu_A Actin interacting prote 42.3 58 0.002 34.6 8.4 66 1-66 212-282 (615)
75 1fch_A Peroxisomal targeting s 41.6 2.5E+02 0.0085 27.1 14.8 76 480-555 227-310 (368)
76 3ieg_A DNAJ homolog subfamily 41.2 2.4E+02 0.0082 26.8 14.3 80 501-580 154-258 (359)
77 3dw8_B Serine/threonine-protei 41.0 43 0.0015 34.0 6.9 25 1-25 34-58 (447)
78 4aez_A CDC20, WD repeat-contai 40.3 1.4E+02 0.0047 30.1 10.6 47 1-48 223-269 (401)
79 4ery_A WD repeat-containing pr 39.7 1.4E+02 0.0047 28.5 10.1 47 1-47 155-201 (312)
80 1got_B GT-beta; complex (GTP-b 39.6 55 0.0019 32.3 7.2 46 1-47 190-235 (340)
81 1yfq_A Cell cycle arrest prote 39.0 95 0.0032 29.9 8.8 92 1-93 199-311 (342)
82 1sq9_A Antiviral protein SKI8; 38.9 44 0.0015 33.3 6.4 34 1-34 297-330 (397)
83 1fch_A Peroxisomal targeting s 38.8 2.7E+02 0.0094 26.8 14.1 81 501-581 217-310 (368)
84 3sfz_A APAF-1, apoptotic pepti 38.7 59 0.002 38.6 8.4 65 1-65 1133-1205(1249)
85 2xzm_R RACK1; ribosome, transl 37.7 1.3E+02 0.0045 29.4 9.8 47 1-49 219-266 (343)
86 1vyk_A Oxygen-evolving enhance 37.7 26 0.00088 31.6 3.8 107 468-613 40-149 (149)
87 2ecf_A Dipeptidyl peptidase IV 37.6 99 0.0034 34.1 9.7 63 1-65 114-179 (741)
88 3dwl_C Actin-related protein 2 37.5 57 0.002 32.3 7.0 24 1-24 152-175 (377)
89 2xcb_A PCRH, regulatory protei 36.8 1.4E+02 0.005 24.8 8.7 100 506-614 23-138 (142)
90 2j04_A TAU60, YPL007P, hypothe 36.5 50 0.0017 36.6 6.6 64 1-65 135-209 (588)
91 3lrv_A PRE-mRNA-splicing facto 36.3 1.7E+02 0.0057 28.6 10.3 53 1-53 131-185 (343)
92 3fp2_A TPR repeat-containing p 36.3 3.7E+02 0.013 27.5 15.7 229 353-617 263-536 (537)
93 3vu4_A KMHSV2; beta-propeller 36.1 60 0.0021 32.4 6.9 24 1-24 246-269 (355)
94 2oit_A Nucleoporin 214KDA; NH2 35.9 41 0.0014 35.2 5.8 55 1-56 198-258 (434)
95 4gqb_B Methylosome protein 50; 34.1 1E+02 0.0035 30.7 8.3 46 1-47 133-178 (344)
96 3as5_A MAMA; tetratricopeptide 34.0 1.2E+02 0.0042 25.5 7.9 82 500-581 41-135 (186)
97 2q7f_A YRRB protein; TPR, prot 33.8 79 0.0027 28.6 6.9 80 500-579 124-216 (243)
98 2ynn_A Coatomer subunit beta'; 33.5 83 0.0028 30.4 7.3 32 2-33 235-266 (304)
99 1sq9_A Antiviral protein SKI8; 33.3 64 0.0022 32.0 6.6 48 1-48 239-301 (397)
100 2vxg_A LD41624, GE-1, CG6181-P 33.3 29 0.001 30.8 3.4 39 313-355 5-43 (139)
101 1xip_A Nucleoporin NUP159; bet 33.2 43 0.0015 34.9 5.3 54 1-56 168-231 (388)
102 1vyh_C Platelet-activating fac 33.1 1.2E+02 0.004 30.9 8.7 28 2-29 241-268 (410)
103 4a11_B DNA excision repair pro 32.8 1E+02 0.0035 30.4 8.0 48 1-48 49-109 (408)
104 2vq2_A PILW, putative fimbrial 32.7 2E+02 0.0069 25.1 9.4 104 478-581 50-172 (225)
105 3iz6_a 40S ribosomal protein R 32.5 61 0.0021 32.7 6.3 49 1-49 304-355 (380)
106 2ynn_A Coatomer subunit beta'; 32.4 1.2E+02 0.004 29.2 8.2 110 1-110 146-275 (304)
107 1jmx_B Amine dehydrogenase; ox 32.3 1.8E+02 0.0061 27.9 9.6 66 1-66 5-73 (349)
108 2vdu_B TRNA (guanine-N(7)-)-me 32.3 1.1E+02 0.0037 31.5 8.3 47 1-47 201-250 (450)
109 3mmy_A MRNA export factor; mRN 32.1 1E+02 0.0036 29.7 7.8 48 1-49 45-97 (368)
110 2ho1_A Type 4 fimbrial biogene 32.1 2.8E+02 0.0097 24.9 17.3 116 478-602 113-246 (252)
111 3k26_A Polycomb protein EED; W 32.0 63 0.0022 31.4 6.2 65 1-65 121-190 (366)
112 3fm0_A Protein CIAO1; WDR39,SG 32.0 1.5E+02 0.005 29.2 9.0 90 1-90 111-221 (345)
113 3sfz_A APAF-1, apoptotic pepti 32.0 1.1E+02 0.0037 36.2 9.2 49 1-50 621-669 (1249)
114 1elr_A TPR2A-domain of HOP; HO 31.7 1.4E+02 0.0049 23.4 7.5 44 561-614 84-127 (131)
115 3odt_A Protein DOA1; ubiquitin 31.5 1.3E+02 0.0045 28.2 8.3 48 1-49 65-115 (313)
116 2fbn_A 70 kDa peptidylprolyl i 31.3 1.5E+02 0.005 26.3 8.2 78 503-580 40-146 (198)
117 3gre_A Serine/threonine-protei 31.0 39 0.0013 34.5 4.5 47 1-47 220-266 (437)
118 1u89_A Talin 1, talin; 4-helix 30.8 1.3E+02 0.0043 26.7 7.0 50 123-173 58-111 (139)
119 4g56_B MGC81050 protein; prote 30.8 53 0.0018 33.0 5.4 56 1-56 48-112 (357)
120 3iz6_a 40S ribosomal protein R 30.6 81 0.0028 31.7 6.9 30 1-30 255-284 (380)
121 1k8k_C P40, ARP2/3 complex 41 30.5 45 0.0015 32.7 4.8 48 1-49 208-255 (372)
122 3no2_A Uncharacterized protein 30.2 1.4E+02 0.0048 28.8 8.3 70 2-74 131-202 (276)
123 1l0q_A Surface layer protein; 30.2 1.3E+02 0.0045 29.6 8.4 64 1-66 37-104 (391)
124 2a7w_A PRA-PH, phosphoribosyl- 30.1 2.6E+02 0.0089 23.9 9.5 83 267-363 7-92 (116)
125 3jrp_A Fusion protein of prote 29.9 37 0.0013 33.3 4.0 46 1-47 17-64 (379)
126 2ymu_A WD-40 repeat protein; u 29.9 2.1E+02 0.0072 29.9 10.4 46 1-48 432-477 (577)
127 3f3f_A Nucleoporin SEH1; struc 29.9 99 0.0034 29.3 7.1 29 1-29 116-146 (351)
128 3odt_A Protein DOA1; ubiquitin 29.8 1.9E+02 0.0065 27.0 9.1 48 1-50 190-237 (313)
129 3fqm_A NS5A, non-structural pr 29.8 29 0.00099 31.5 2.7 86 5-90 28-129 (177)
130 4gco_A Protein STI-1; structur 29.6 1.1E+02 0.0039 25.3 6.6 61 537-606 54-122 (126)
131 1yfq_A Cell cycle arrest prote 29.6 46 0.0016 32.2 4.6 64 1-67 107-179 (342)
132 2vgx_A Chaperone SYCD; alterna 29.2 1.5E+02 0.005 25.4 7.5 102 504-614 24-141 (148)
133 4g56_B MGC81050 protein; prote 29.1 61 0.0021 32.4 5.6 47 1-48 145-191 (357)
134 1jmx_B Amine dehydrogenase; ox 28.9 1.1E+02 0.0037 29.5 7.3 44 2-49 261-305 (349)
135 3bws_A Protein LP49; two-domai 28.7 81 0.0028 31.8 6.5 46 1-48 350-410 (433)
136 1l0q_A Surface layer protein; 28.7 1.2E+02 0.004 30.1 7.6 48 1-50 79-127 (391)
137 3e5z_A Putative gluconolactona 28.6 1.4E+02 0.0047 28.5 7.9 6 41-46 258-263 (296)
138 1yvw_A PRA-PH, phosphoribosyl- 28.6 2.7E+02 0.0094 23.7 9.2 83 267-363 6-91 (115)
139 3sz7_A HSC70 cochaperone (SGT) 28.5 82 0.0028 27.1 5.7 79 502-580 12-103 (164)
140 2pm7_A Protein WEB1, protein t 28.3 2.5E+02 0.0086 29.2 10.2 167 132-312 144-366 (399)
141 2z3z_A Dipeptidyl aminopeptida 28.3 1.3E+02 0.0045 32.9 8.6 13 2-14 187-199 (706)
142 3spa_A Mtrpol, DNA-directed RN 27.9 42 0.0014 39.8 4.4 86 471-556 128-227 (1134)
143 2q7f_A YRRB protein; TPR, prot 27.9 68 0.0023 29.0 5.2 103 479-581 66-184 (243)
144 2pbi_B Guanine nucleotide-bind 27.7 1.7E+02 0.0059 28.9 8.7 24 1-24 70-93 (354)
145 1z68_A Fibroblast activation p 27.7 1.7E+02 0.0058 32.1 9.3 62 2-65 66-137 (719)
146 2aq5_A Coronin-1A; WD40 repeat 27.7 2.1E+02 0.0073 28.5 9.5 48 1-48 137-186 (402)
147 4gga_A P55CDC, cell division c 27.6 1.5E+02 0.0051 30.0 8.3 47 1-48 153-199 (420)
148 2lni_A Stress-induced-phosphop 27.6 1.1E+02 0.0037 24.3 6.0 20 561-580 89-108 (133)
149 2ovr_B FBW7, F-BOX/WD repeat p 27.6 1.8E+02 0.0062 29.5 9.0 98 3-101 285-398 (445)
150 2mad_H Methylamine dehydrogena 27.5 2.3E+02 0.008 28.6 9.8 69 1-70 71-159 (373)
151 3vtx_A MAMA; tetratricopeptide 27.2 1.6E+02 0.0055 25.4 7.5 78 503-580 75-165 (184)
152 3pe7_A Oligogalacturonate lyas 27.0 2.4E+02 0.008 27.7 9.6 65 2-67 42-111 (388)
153 3ei3_B DNA damage-binding prot 27.0 1.9E+02 0.0066 28.4 8.9 48 1-48 79-128 (383)
154 2vdu_B TRNA (guanine-N(7)-)-me 27.0 1.1E+02 0.0039 31.3 7.4 47 1-49 313-365 (450)
155 3dwl_C Actin-related protein 2 26.9 50 0.0017 32.7 4.4 25 1-25 211-235 (377)
156 2dba_A Smooth muscle cell asso 26.5 1.5E+02 0.0051 24.1 6.9 62 537-607 72-141 (148)
157 3k26_A Polycomb protein EED; W 26.5 80 0.0027 30.6 5.8 28 1-28 291-320 (366)
158 3q49_B STIP1 homology and U bo 26.2 1.1E+02 0.0037 24.9 5.8 79 503-581 11-102 (137)
159 4ga2_A E3 SUMO-protein ligase 26.2 99 0.0034 26.5 5.7 95 509-611 39-146 (150)
160 2ecf_A Dipeptidyl peptidase IV 26.1 2.7E+02 0.0093 30.4 10.7 28 1-28 42-75 (741)
161 2fo7_A Synthetic consensus TPR 26.0 69 0.0024 25.3 4.4 78 504-581 4-94 (136)
162 2ymu_A WD-40 repeat protein; u 26.0 2.4E+02 0.0081 29.6 9.9 47 1-49 63-109 (577)
163 3v7d_B Cell division control p 25.6 69 0.0024 32.9 5.3 47 2-49 398-444 (464)
164 3bws_A Protein LP49; two-domai 25.5 1.6E+02 0.0055 29.5 8.1 48 1-50 308-356 (433)
165 3fvz_A Peptidyl-glycine alpha- 25.4 3.8E+02 0.013 25.9 10.7 68 1-68 29-122 (329)
166 3dm0_A Maltose-binding peripla 24.9 2E+02 0.007 31.4 9.4 63 1-65 567-630 (694)
167 2pbi_B Guanine nucleotide-bind 24.8 2E+02 0.0068 28.4 8.5 43 4-47 207-249 (354)
168 1pul_A Hypothetical protein C3 24.6 2.5E+02 0.0085 24.3 7.7 41 158-198 17-58 (125)
169 1vyh_C Platelet-activating fac 24.1 1.7E+02 0.006 29.6 8.1 46 1-47 156-201 (410)
170 3dsm_A Uncharacterized protein 24.1 2.2E+02 0.0074 27.9 8.6 30 40-69 132-163 (328)
171 2z3z_A Dipeptidyl aminopeptida 24.0 2.2E+02 0.0074 31.1 9.3 25 1-26 126-150 (706)
172 2j04_A TAU60, YPL007P, hypothe 23.9 3.6E+02 0.012 29.7 10.7 70 1-73 188-261 (588)
173 1ri6_A Putative isomerase YBHE 23.8 71 0.0024 30.7 4.7 49 1-51 43-96 (343)
174 2ynq_A ESSB; membrane protein, 23.8 1E+02 0.0035 28.0 5.2 54 296-349 43-114 (161)
175 2xev_A YBGF; tetratricopeptide 23.6 2.7E+02 0.0093 21.9 9.7 19 561-579 81-99 (129)
176 2y4t_A DNAJ homolog subfamily 23.6 5.4E+02 0.019 25.4 22.5 105 477-581 184-320 (450)
177 3hym_B Cell division cycle pro 23.6 4.5E+02 0.015 24.4 14.1 52 503-554 127-183 (330)
178 3scy_A Hypothetical bacterial 23.4 2.5E+02 0.0086 27.3 9.0 102 1-102 160-303 (361)
179 2ovr_B FBW7, F-BOX/WD repeat p 23.2 1.7E+02 0.0059 29.7 7.8 47 2-49 124-170 (445)
180 3nf1_A KLC 1, kinesin light ch 23.1 4.4E+02 0.015 24.2 10.7 54 503-556 155-221 (311)
181 3pbp_A Nucleoporin NUP82; beta 22.9 83 0.0028 33.5 5.2 65 1-66 71-157 (452)
182 3uq3_A Heat shock protein STI1 22.4 50 0.0017 30.2 3.2 75 502-581 80-164 (258)
183 3i2n_A WD repeat-containing pr 22.4 1.3E+02 0.0045 28.9 6.4 44 2-47 175-218 (357)
184 3cv0_A Peroxisome targeting si 22.3 4.7E+02 0.016 24.2 13.4 102 479-580 181-310 (327)
185 3vtx_A MAMA; tetratricopeptide 22.2 2.7E+02 0.0091 23.9 8.0 99 482-580 17-131 (184)
186 2pm7_B Protein transport prote 22.0 1.3E+02 0.0043 28.9 6.2 46 1-47 15-62 (297)
187 1got_B GT-beta; complex (GTP-b 21.9 83 0.0028 31.0 4.9 25 1-25 276-300 (340)
188 3u4t_A TPR repeat-containing p 21.5 2.9E+02 0.01 25.1 8.6 109 474-582 7-134 (272)
189 2oaj_A Protein SNI1; WD40 repe 21.3 2E+02 0.0067 33.2 8.5 48 1-50 23-70 (902)
190 1a17_A Serine/threonine protei 21.0 2.3E+02 0.0079 23.4 7.1 80 501-580 47-141 (166)
191 2qc5_A Streptogramin B lactona 20.8 3.9E+02 0.013 24.6 9.4 36 39-74 62-99 (300)
192 1p22_A F-BOX/WD-repeat protein 20.3 3.4E+02 0.011 27.4 9.4 47 2-49 138-184 (435)
193 2ojh_A Uncharacterized protein 20.2 83 0.0028 29.2 4.2 24 2-25 223-257 (297)
194 3i2n_A WD repeat-containing pr 20.1 98 0.0034 29.9 4.9 46 1-47 71-120 (357)
195 4i17_A Hypothetical protein; T 20.0 2.9E+02 0.01 24.6 8.1 21 503-523 78-98 (228)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.55 E-value=0.18 Score=61.20 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=108.8
Q ss_pred HHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHcCCcchHHhH---HhHcCcCh
Q 007100 424 KRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKV---KTEFKVSE 500 (618)
Q Consensus 424 ~~L~~a~~~~~~~~~~~f~~~~~~e~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~Ti~~li~~~~~k~a~kl---~k~fKVsd 500 (618)
..+.+|.+++.+..+...+.+.-.-+.+.-++...++.=.+ . -....+.+.+..+...|+.+.|-+. +.+.. ++
T Consensus 1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiK-A-dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e 1166 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK-A-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RE 1166 (1630)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHh-c-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-cc
Confidence 34555555554443333443333333333334333332111 0 0112355677777788887665332 22221 22
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHH
Q 007100 501 KRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 501 kr~~~lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~eA~kyI~ki~d~e~r~~l~~k~~~~~eA~~~a~ 580 (618)
-...--..-+|++.+++++++.|.+...+ -.|.-..+.|...|...+|..|-.+++++......|+++|++.+|++.|.
T Consensus 1167 ~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred ccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11111267789999999999999874444 47778999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHH
Q 007100 581 QAKDGELLGRLK 592 (618)
Q Consensus 581 ~~kd~~~L~~i~ 592 (618)
+.++.....++-
T Consensus 1246 KA~n~~aWkev~ 1257 (1630)
T 1xi4_A 1246 KANSTRTWKEVC 1257 (1630)
T ss_pred HhCCHHHHHHHH
Confidence 999998766443
No 2
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.23 E-value=0.0037 Score=67.43 Aligned_cols=169 Identities=17% Similarity=0.137 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHcCCcchHHhHH-hHc-CcChH
Q 007100 424 KRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVK-TEF-KVSEK 501 (618)
Q Consensus 424 ~~L~~a~~~~~~~~~~~f~~~~~~e~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~Ti~~li~~~~~k~a~kl~-k~f-KVsdk 501 (618)
..|..|.+++.+..++..+....+-+.+..+++..++.=.+.+ .. ....+.+..+...|..+.|.+.- ..- +.++.
T Consensus 17 ~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~-D~-~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~ 94 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DP-SSYMEVVQAANTSGNWEELVKYLQMARKKARES 94 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccc
Confidence 3355555555554444455555555555555555443211100 00 12344445555566665554421 111 12222
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHh
Q 007100 502 RWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQ 581 (618)
Q Consensus 502 r~~~lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~eA~kyI~ki~d~e~r~~l~~k~~~~~eA~~~a~~ 581 (618)
.-.---+.++++.|+|+++++|.+. .....|.-+-+.|...|..++|..|-.+++.+......+.++|+|.+|++.+.+
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp --------------CHHHHTTTTTC-C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHH
Confidence 2233345588999999999999974 334588888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHc
Q 007100 582 AKDGELLGRLKLTF 595 (618)
Q Consensus 582 ~kd~~~L~~i~~~~ 595 (618)
.+++...+.+-..|
T Consensus 174 A~~~~~Wk~v~~aC 187 (449)
T 1b89_A 174 ANSTRTWKEVCFAC 187 (449)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHH
Confidence 99997666654444
No 3
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.87 E-value=3.5 Score=50.36 Aligned_cols=302 Identities=14% Similarity=0.110 Sum_probs=179.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhCCChh------HHHHHHHHHHhhhcCCCChHHHHHHHHHhhccCCCCCHHHHHHHH
Q 007100 219 ASVLIGRLINANCHLLALRISEYLGMNQE------VVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHA 292 (618)
Q Consensus 219 ~~~li~rL~~r~~~~lA~~I~~~l~~~~~------~I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~~~~is~~~IA~~A 292 (618)
.+..+.-++..+.|..|+.+=+-.-+.++ ..=.-=+.+-|+. +-.++.+.| +++. .....+||..|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka----D~~Rv~eyI-~kLd---~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA----DRTRVMEYI-NRLD---NYDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh----ChhhHHHHH-HHhh---hccHHHHHHHH
Confidence 45677888899999999998875444332 1100023333322 113333333 4443 44588999999
Q ss_pred HHhCcHHHHHHHHhcCCCCccchhhhh-hcCchHHHHHHHHHcCChhHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHH
Q 007100 293 DKSGRRKLAAMLVEHEPRSSKQVPLLL-SIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFT 371 (618)
Q Consensus 293 ~~~gR~~LA~~Ll~~E~~~~~qV~lLl-~~~~~~~AL~kAi~S~D~dLI~~vLl~l~~~l~~~~f~~~l~~~p~A~~l~~ 371 (618)
.+.|+.+-|..+.+.=....+-+..|+ .+++|++|.+-|-+-.++++-+. +=+.+.. ..+.+.|.+-|+
T Consensus 1060 i~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsq-LAKAql~---------~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQ-LAKAQLQ---------KGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHH-HHHHHHh---------CCCHHHHHHHHH
Confidence 999999999999887666666566666 88999999998876655444442 2222211 112234444432
Q ss_pred HHHHhcCHHH---HHHHHHhcCChHHHHHHHHHHHHhcCCCCCCCCCCCCcchHH-HHHHHHHhhhhhcccccHHHHHHH
Q 007100 372 VYARCYKHEF---LKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRI-KRIEKAHSLFSETKEHTFESKAAE 447 (618)
Q Consensus 372 ~y~~~~~~~~---L~d~~~q~d~~~e~a~l~l~~a~~~~~~~~~~~~~~~~~~k~-~~L~~a~~~~~~~~~~~f~~~~~~ 447 (618)
+..+.+. +-+++.+.+++.++-.. +..+.+..+.+ .+ ..| .-.|.+. +.+. .++
T Consensus 1130 ---KAdD~say~eVa~~~~~lGkyEEAIey-L~mArk~~~e~-----------~Idt~L---afaYAKl--~rle--ele 1187 (1630)
T 1xi4_A 1130 ---KADDPSSYMEVVQAANTSGNWEELVKY-LQMARKKARES-----------YVETEL---IFALAKT--NRLA--ELE 1187 (1630)
T ss_pred ---hcCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhcccc-----------cccHHH---HHHHHhh--cCHH--HHH
Confidence 2233322 45567777777554333 22333222110 00 001 0112211 0111 011
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHcCCcchHHhHHhHcCcChHHHHHHHHHHHHhcCChhHHHHhhccC
Q 007100 448 EHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEK 527 (618)
Q Consensus 448 e~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~Ti~~li~~~~~k~a~kl~k~fKVsdkr~~~lkl~aLa~~~~wdeLe~f~~sK 527 (618)
+. +.. .+ ...+...=..|...|....|.++-+.- -.|.-..++|++.|++++--..++.-
T Consensus 1188 ~f---------I~~-~n-----~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1188 EF---------ING-PN-----NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HH---------HhC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 11 110 00 011222224456677788887775553 38888899999999988777777645
Q ss_pred CCCCCchHHHHHHHhcCCHHHHHHhhccCC----CHHHHHHHHHHcCCHHHHHHHHH
Q 007100 528 RPPIGYRPFVEACVDADEKGEALKYIPKLV----DPRERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 528 KspIgyepfv~~~~~~~~~~eA~kyI~ki~----d~e~r~~l~~k~~~~~eA~~~a~ 580 (618)
+++=.|.-+..+|++.|..+.|..+.-.+. ..++-+.+|.+.|.|.+|+..+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 778788888999999999999997775552 46688889999999999999883
No 4
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.29 E-value=0.73 Score=52.26 Aligned_cols=110 Identities=13% Similarity=0.037 Sum_probs=73.3
Q ss_pred HHHHHhcCChHHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCChHHHHHHHHHhhccCCCC-----------CHHHHHHH
Q 007100 223 IGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGI-----------SYAAVAAH 291 (618)
Q Consensus 223 i~rL~~r~~~~lA~~I~~~l~~~~~~I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~~~~i-----------s~~~IA~~ 291 (618)
.+.-+..+++..|+++|+.+ .....+..+|..-+. .. +=++++..-.+++...++ ....+|+.
T Consensus 659 f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~-~~---~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQ-RF---NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHH-cC---CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHH
Confidence 45567789999999999855 455666667766552 22 334444444444332221 13467777
Q ss_pred HHHhCcHHHHHHHHhcCCCCccchhhhhhcCchHHHHHHHHHcCChh
Q 007100 292 ADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTD 338 (618)
Q Consensus 292 A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~kAi~S~D~d 338 (618)
|-..|+.+.|..+..+=-.+.+.+.++.++++|++|+.-|-.-++.+
T Consensus 733 a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 733 AETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred HHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 88888888888776666677777888888888888888777777665
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.02 E-value=0.19 Score=57.18 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=72.5
Q ss_pred HHHHHcCCcchHHhHHhHcCcChHHHHH-------------HHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcC
Q 007100 478 RTCIVLGNHRAAMKVKTEFKVSEKRWYW-------------LKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDAD 544 (618)
Q Consensus 478 ~~li~~~~~k~a~kl~k~fKVsdkr~~~-------------lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~ 544 (618)
...+..|+.+.|.++.+.. .+++-|- +..++|.+.++|+.|..+......+=...-..+.+...|
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3445566777777776544 3444442 345566666677666655443222223345677788888
Q ss_pred CHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHH
Q 007100 545 EKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGE 586 (618)
Q Consensus 545 ~~~eA~kyI~ki~d~e~r~~l~~k~~~~~eA~~~a~~~kd~~ 586 (618)
....|...--++.++++.+++|.++++|.+|+..|...+..+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred chHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 988888665556789999999999999999999999987543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=90.83 E-value=20 Score=38.45 Aligned_cols=84 Identities=11% Similarity=-0.160 Sum_probs=48.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHh-CCChhH-HHHHHHHHHhhhcCCCChHHHHHHHHHhh-c-cCCCCCHHHHHHHHHH
Q 007100 219 ASVLIGRLINANCHLLALRISEYL-GMNQEV-VIMHWACSKITASLAIPDVTLLEILLDKL-K-LCKGISYAAVAAHADK 294 (618)
Q Consensus 219 ~~~li~rL~~r~~~~lA~~I~~~l-~~~~~~-I~~~WA~~kI~~~~~~~D~~l~~~I~~kl-~-~~~~is~~~IA~~A~~ 294 (618)
...++..++..|.|..|+++.+-+ +..++. .+..-+..-. ... +-++.... .++. . ......+..++....+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g--~~~~A~~~-~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYC-CTG--DYARAKCL-LTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HTT--CHHHHHHH-HHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHH-HcC--cHHHHHHH-HHHHhccccchhHHHHHHHHHHH
Confidence 356778888899999999887643 332322 2211121111 121 12232232 3332 1 2223456677888899
Q ss_pred hCcHHHHHHHHh
Q 007100 295 SGRRKLAAMLVE 306 (618)
Q Consensus 295 ~gR~~LA~~Ll~ 306 (618)
.|+.+-|..+++
T Consensus 163 ~g~~~~A~~~~~ 174 (597)
T 2xpi_A 163 LYDWQGALNLLG 174 (597)
T ss_dssp TTCHHHHHHHHC
T ss_pred HhhHHHHHHHHh
Confidence 999999999998
No 7
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=90.76 E-value=20 Score=38.39 Aligned_cols=105 Identities=11% Similarity=-0.061 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCcchHHhHHhH---cCcChHHHHHHHHHHHHhcCChhHHHHhhcc--------CCCC----CCchHHHHH
Q 007100 475 DTIRTCIVLGNHRAAMKVKTE---FKVSEKRWYWLKVFALATKRDWDALERFSKE--------KRPP----IGYRPFVEA 539 (618)
Q Consensus 475 ~Ti~~li~~~~~k~a~kl~k~---fKVsdkr~~~lkl~aLa~~~~wdeLe~f~~s--------KKsp----Igyepfv~~ 539 (618)
.....+...|+.+.|.++-++ ..-.+...|......+.+.|+|++-..+... ...| ..|.-...+
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 334445566766665554332 1223455677777777777777776655531 1112 233445667
Q ss_pred HHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHcCCHHHHHHHH
Q 007100 540 CVDADEKGEALKYIPKL----V-D---PRERAEAYARIGMAKEAADAA 579 (618)
Q Consensus 540 ~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k~~~~~eA~~~a 579 (618)
+.+.|+.++|..+..++ + + +......|.+.|++.+|.+..
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777777666553 1 1 234556667777777776554
No 8
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=89.11 E-value=0.67 Score=49.82 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHcCCcchHHhHHhHcCcChHHHHHHHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHH
Q 007100 472 SISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALK 551 (618)
Q Consensus 472 Sl~~Ti~~li~~~~~k~a~kl~k~fKVsdkr~~~lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~eA~k 551 (618)
.....-..|...|..+.|..+-+.- ..|.....+|++.|+|++--.-+..-.+|-.|...+.+|+..|..++|..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp -------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHH
Confidence 4555666777888899988876644 48999999999999998755544323588899999999999999999986
Q ss_pred hhccCC----CHHHHHHHHHHcCCHHHHHHHHHhc
Q 007100 552 YIPKLV----DPRERAEAYARIGMAKEAADAASQA 582 (618)
Q Consensus 552 yI~ki~----d~e~r~~l~~k~~~~~eA~~~a~~~ 582 (618)
..-.+- +.++-+++|.+.|.|.+|+....+.
T Consensus 199 ~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 199 CGLHIVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 655553 3345557899999999998776554
No 9
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.97 E-value=1.7 Score=40.71 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=62.2
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHH
Q 007100 508 VFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGEL 587 (618)
Q Consensus 508 l~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~eA~kyI~ki~d~e~r~~l~~k~~~~~eA~~~a~~~kd~~~ 587 (618)
.+++.+.|+|+.|--+..+...-=++.--.+.+...|....|-..-=...|.++++++|.++|.|.+|+-.|.-.+-.+.
T Consensus 54 e~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~ 133 (177)
T 3mkq_B 54 EMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAA 133 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHH
Confidence 34677778887775333222222233345567777777765542222223799999999999999999999999999988
Q ss_pred HHHHHHHccC
Q 007100 588 LGRLKLTFAQ 597 (618)
Q Consensus 588 L~~i~~~~~~ 597 (618)
-++|...+..
T Consensus 134 a~~~~~~~~~ 143 (177)
T 3mkq_B 134 ASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 8888877653
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=76.29 E-value=65 Score=32.09 Aligned_cols=100 Identities=14% Similarity=0.026 Sum_probs=53.6
Q ss_pred HHHcCCcchHHhHHhH-cCcC--hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHH
Q 007100 480 CIVLGNHRAAMKVKTE-FKVS--EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALK 551 (618)
Q Consensus 480 li~~~~~k~a~kl~k~-fKVs--dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~k 551 (618)
+...|+.+.|...-++ .++. ....|......+.+.|++++-...... ...+-.|.-...+..+.|+.++|..
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455666655443222 2222 234566666777777777766555431 1222233344556667777777766
Q ss_pred hhccC----CC----HHHHHHHHHHcCCHHHHHHHH
Q 007100 552 YIPKL----VD----PRERAEAYARIGMAKEAADAA 579 (618)
Q Consensus 552 yI~ki----~d----~e~r~~l~~k~~~~~eA~~~a 579 (618)
+..++ |+ .......|.+.|++.+|.+..
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55443 21 234555666667776666553
No 11
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=74.99 E-value=6 Score=38.64 Aligned_cols=63 Identities=13% Similarity=-0.101 Sum_probs=37.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe-E-EEEECCeEEEEeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS-V-LLYWNDMLVMVAPQA 67 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~-v-~~~~~~~l~l~g~~~ 67 (618)
+++||+|++++.- ++.+++++.+-.+....+... ..|..+.|..+.. + +......|.++....
T Consensus 246 ~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 246 TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred EEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 4689999887664 688888875433333344333 3678888875432 2 223345666666543
No 12
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=71.60 E-value=8.3 Score=41.84 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=61.6
Q ss_pred cChHHHHHHHHHHHHhcCChhHHHHhhcc---C---CCCCCchHHHHHHHhcCCHHHHHHhhccCC---------CHHHH
Q 007100 498 VSEKRWYWLKVFALATKRDWDALERFSKE---K---RPPIGYRPFVEACVDADEKGEALKYIPKLV---------DPRER 562 (618)
Q Consensus 498 Vsdkr~~~lkl~aLa~~~~wdeLe~f~~s---K---KspIgyepfv~~~~~~~~~~eA~kyI~ki~---------d~e~r 562 (618)
.|+..-|-.-|+++++.|++++-..+... + -..+.|-..+..|.+.|..++|......|. .+.-=
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45777788888888888888887776642 1 134667788888888888888887766542 35566
Q ss_pred HHHHHHcCCHHHHHHHHHhcC
Q 007100 563 AEAYARIGMAKEAADAASQAK 583 (618)
Q Consensus 563 ~~l~~k~~~~~eA~~~a~~~k 583 (618)
+..|.+.|++.+|.++..+++
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHH
Confidence 777788888888776655544
No 13
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=69.00 E-value=79 Score=29.86 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc-----CCC------CCCchHHHHHHHhcCCHHHHHHhhcc
Q 007100 503 WYWLKVFALATKRDWDALERFSKE-----KRP------PIGYRPFVEACVDADEKGEALKYIPK 555 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f~~s-----KKs------pIgyepfv~~~~~~~~~~eA~kyI~k 555 (618)
.|......+...|++++-..+... .+. +..+.-...++...|+.++|..|..+
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455556666777777766555421 011 11222234455566666666655544
No 14
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens}
Probab=67.40 E-value=23 Score=39.72 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=118.2
Q ss_pred CCCCccchhhhhhcCchHHHHHHHHHcCChhHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHHhcC---------
Q 007100 308 EPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYK--------- 378 (618)
Q Consensus 308 E~~~~~qV~lLl~~~~~~~AL~kAi~S~D~dLI~~vLl~l~~~l~~~~f~~~l~~~p~A~~l~~~y~~~~~--------- 378 (618)
+.+-...+..|+.+|.++.|+.=|=+-+|.+....++-....+-....+|.-....+=|..+|..|.+.+.
T Consensus 328 ~~~R~~~i~~L~~~g~~e~A~~LAEky~Df~sLv~l~e~~~~~~rl~~Y~~kfg~~~FA~~lf~~yi~~g~~~~LL~~~~ 407 (644)
T 3i4r_B 328 LQKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDFLFRWYLEKGKRGKLLSQPI 407 (644)
T ss_dssp HHTTTTTSTTHHHHSCTTTHHHHHHHTSCCHHHHHHHHHHSSCTTHHHHHHHSCSSCHHHHTHHHHCC------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhCCHHHHHHHHHccchHHHHHHHHHHhCcCChHHHHHHHHHHCCChhHHhcCcc
Confidence 33456688899999999999999999999997777665444333344555544334557777777765332
Q ss_pred --HHHHHHHHH-----------hcCChHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHh-hhhhccc-ccHH-
Q 007100 379 --HEFLKDFFL-----------STGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHS-LFSETKE-HTFE- 442 (618)
Q Consensus 379 --~~~L~d~~~-----------q~d~~~e~a~l~l~~a~~~~~~~~~~~~~~~~~~k~~~L~~a~~-~~~~~~~-~~f~- 442 (618)
...|..|+. ..++|..+|...+..+..+++.- ..|...|.-|.= ..+.+.+ ....
T Consensus 408 ~~~~~L~~FL~~~p~LsWI~di~~~~y~~Aa~tL~~lA~~E~~~~---------~kkk~~LSLaKLa~LAs~~~~~~~~~ 478 (644)
T 3i4r_B 408 SQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYF---------AKKKTLLGLSKLAALASDFSEDMLQE 478 (644)
T ss_dssp -CGGGTHHHHHTCSSSHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---------HHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred hhhHHHHHHHhcCCCchHHHHHHhCCHHHHHHHHHHHHhcchhHH---------HHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 222444444 36778888888877776443221 133333332221 1111111 1122
Q ss_pred -HHHHHHHHHHHHHHHHHHhhc----ccc--cccCCCHHHHHHHHHHcCCc-chHHhHHhHcCcC------h---HHHHH
Q 007100 443 -SKAAEEHAKLLRIQHELEVST----KQA--IFVDSSISDTIRTCIVLGNH-RAAMKVKTEFKVS------E---KRWYW 505 (618)
Q Consensus 443 -~~~~~e~~~Ll~~Q~~Le~~~----~~~--~f~~~Sl~~Ti~~li~~~~~-k~a~kl~k~fKVs------d---kr~~~ 505 (618)
-+.++.+.+++++|+.|-... +.. .-.-+|+.+.|..|+...+. -.-..+++-|++- + +++..
T Consensus 479 ~l~~i~~~L~li~~Qe~L~~~l~~~~~~~~~~~~~Ls~~eLI~l~t~~~n~~a~~~~F~~AL~ll~~~~~~~~~~~~~L~ 558 (644)
T 3i4r_B 479 KIEEMAEQERFLLHQETLPEQLLAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDLK 558 (644)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTHHHHTTCCSSSSCCCCHHHHHHHSSSTTCTTCCHHHHHTTTTTTSSCC----CCHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcCCCccccHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 245899999999999775432 211 12337889998888753322 1123344444331 1 23222
Q ss_pred HHH-HHHHhcCChhHHHHhhccCCCCCCch---HHHHHHHhcCCH-HHHHHhhccCC
Q 007100 506 LKV-FALATKRDWDALERFSKEKRPPIGYR---PFVEACVDADEK-GEALKYIPKLV 557 (618)
Q Consensus 506 lkl-~aLa~~~~wdeLe~f~~sKKspIgye---pfv~~~~~~~~~-~eA~kyI~ki~ 557 (618)
.+| +..+..-+|+.++. +..|+-.. .|+++|-..=.+ .+...|+|-+.
T Consensus 559 ~~IW~r~i~~DdW~~~~~----~d~~~~~~~~t~~~k~l~~~~~~~~~~~~~lP~~~ 611 (644)
T 3i4r_B 559 LEILCKALQRDNWSSSDG----KDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVK 611 (644)
T ss_dssp HHHHHHHHHTTCC---------------CHHHHHHHHCC-------------CTTSC
T ss_pred HHHHHHHHhhcchhhccC----CCCHHHHHhcCcHHHHHHHHHhcCccHHHhCcCHH
Confidence 222 22233358998872 12233332 344444332222 35557877766
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=65.42 E-value=95 Score=29.48 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHcCCcchHHhHHhH-cCcC--hHHHHHHHHHHHHhcCChhHHHHhhcc--------------CCCCCCchHHHHHHHh
Q 007100 480 CIVLGNHRAAMKVKTE-FKVS--EKRWYWLKVFALATKRDWDALERFSKE--------------KRPPIGYRPFVEACVD 542 (618)
Q Consensus 480 li~~~~~k~a~kl~k~-fKVs--dkr~~~lkl~aLa~~~~wdeLe~f~~s--------------KKspIgyepfv~~~~~ 542 (618)
+...|+.+.|.+.-++ .++. +...|......+...++|++-..+... ...+..|.-...++..
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 4455666555444322 2332 345677777888888998877666521 0112233446677788
Q ss_pred cCCHHHHHHhhccC----C----CHHHHHHHHHHcCCHHHHHHHHHhc
Q 007100 543 ADEKGEALKYIPKL----V----DPRERAEAYARIGMAKEAADAASQA 582 (618)
Q Consensus 543 ~~~~~eA~kyI~ki----~----d~e~r~~l~~k~~~~~eA~~~a~~~ 582 (618)
.|+.++|..+..++ + -......+|.+.|++.+|++...+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 89998888777653 1 2345677888888888888776654
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=65.40 E-value=25 Score=34.83 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=33.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
+++||+|+++|.-..+|.+.+....-.+.+..+.. ...+...+.|.-+.
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDS 218 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCC
Confidence 46899999999988899998887544444444432 23356677776443
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=65.34 E-value=29 Score=33.65 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=38.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEE-EEECCeEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVL-LYWNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~-~~~~~~l~l~g~ 65 (618)
|++||+|+++|.-..+|.+.+.+..-.+.+..++... ....+.|..+..++ ...+..+.+...
T Consensus 221 ~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS--CEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred EEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc--eEEeeecCCCCceeeccCCCEEEEEEC
Confidence 4689999999988889999888765555554544332 34556665443333 233344444443
No 18
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=65.13 E-value=1.1e+02 Score=30.10 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=23.3
Q ss_pred HHHHHHhcCCHHHHHHhhccCC-------C-------HHHHHHHHHHcCCHHHHHHHH
Q 007100 536 FVEACVDADEKGEALKYIPKLV-------D-------PRERAEAYARIGMAKEAADAA 579 (618)
Q Consensus 536 fv~~~~~~~~~~eA~kyI~ki~-------d-------~e~r~~l~~k~~~~~eA~~~a 579 (618)
...++...|+.++|..+..+.- + ......+|.+.|++.+|.+..
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555566665555544321 1 223455666777777766553
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=64.58 E-value=24 Score=34.78 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=38.1
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe-EEEEECCeEEEE
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS-VLLYWNDMLVMV 63 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~-v~~~~~~~l~l~ 63 (618)
+++||+|+++|--..+|.+.+.+..-.+.+..+... .+...+.|.-+.. ++....+.+.+.
T Consensus 202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~~i~v~ 263 (319)
T 3frx_A 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVF 263 (319)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETTEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 468999999999888999988876555554444332 2456777764433 233334444443
No 20
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=63.59 E-value=6.3 Score=42.82 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHcCCcchHHhHHhHc---Cc-ChHHHHHHHHHHHHhcCChhHHHHhhcc---C---CCCCCchHHHHHHH
Q 007100 472 SISDTIRTCIVLGNHRAAMKVKTEF---KV-SEKRWYWLKVFALATKRDWDALERFSKE---K---RPPIGYRPFVEACV 541 (618)
Q Consensus 472 Sl~~Ti~~li~~~~~k~a~kl~k~f---KV-sdkr~~~lkl~aLa~~~~wdeLe~f~~s---K---KspIgyepfv~~~~ 541 (618)
+.+..|..+.+.|+.+.|.++-++- ++ |+..-|-.-|.++++.|++++-.++... + -...-|-..+..|.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4666788888999998887775443 34 5777888999999999999998877642 1 23456778999999
Q ss_pred hcCCHHHHHHhhccCC
Q 007100 542 DADEKGEALKYIPKLV 557 (618)
Q Consensus 542 ~~~~~~eA~kyI~ki~ 557 (618)
+.|+.++|..++.+|.
T Consensus 187 ~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR 202 (501)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999988764
No 21
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=63.43 E-value=39 Score=33.39 Aligned_cols=64 Identities=11% Similarity=0.124 Sum_probs=42.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCcc-ccccCCCCCCCCceeeeCCCeE-EEEECCeEEEEe
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPV-IDESCESALPPEQIAWCGMDSV-LLYWNDMLVMVA 64 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~-~e~~~~~~~~p~~~~WCG~d~v-~~~~~~~l~l~g 64 (618)
+++||+|+++|.-..+|.+.|.+..-.+.. ..+......+...+.|+.+... +..-++.|.+..
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd 241 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFD 241 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence 468999999999888999999876544444 4555433456778888754433 333345555554
No 22
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=60.25 E-value=15 Score=36.10 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=34.4
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS 51 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~ 51 (618)
|++||+|++++.-..+|.+.+.+.+-.+.+..+. ...++..+.|..+..
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGN 128 (369)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCC
Confidence 4689999999988889999988765555554444 233567778875433
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=59.17 E-value=32 Score=33.54 Aligned_cols=64 Identities=6% Similarity=-0.098 Sum_probs=39.5
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEEE--EECCeEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLL--YWNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~~--~~~~~l~l~g~ 65 (618)
|++||+|+++|.-..+|.+.|.+..-.+....+... ......+.|..+...++ ..+..+.+...
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH-TGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 478999999999888999999875444444444322 33556788874332222 22344555543
No 24
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=58.40 E-value=51 Score=30.55 Aligned_cols=119 Identities=10% Similarity=0.045 Sum_probs=79.6
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhCCChh-HHHHHHHHHHhhhcCCCChHHHHHHHHHhhccCCCC-----------CHH
Q 007100 219 ASVLIGRLINANCHLLALRISEYLGMNQE-VVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGI-----------SYA 286 (618)
Q Consensus 219 ~~~li~rL~~r~~~~lA~~I~~~l~~~~~-~I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~~~~i-----------s~~ 286 (618)
|+.=.+--+..|.+..|++||+-++-+.. +-+-+.|.. . -+=++++..-.++++..++ .+.
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~----~---gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALA----Q---GNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHH----T---TCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHH----c---CChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH
Confidence 55556778899999999999998864421 222233322 1 1345555555555543332 235
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCCCCccchhhhhhcCchHHHHHHHHHcCChhHHHHHH
Q 007100 287 AVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVI 344 (618)
Q Consensus 287 ~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~kAi~S~D~dLI~~vL 344 (618)
.+|..|...|...+|-...-+=-...+.|.+|.+.|.+..|.--|-.-|-.+.--.++
T Consensus 81 kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFL 138 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHH
Confidence 6788888888888888776666777788888888888888888887777666655544
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=58.39 E-value=28 Score=33.56 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=30.3
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCc---cccccC-CCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSP---VIDESC-ESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~---~~e~~~-~~~~~p~~~~WCG~d 50 (618)
+++||+|+++|.-. +|.+.+.+.+-... +..+.. ........+.|..+.
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC
Confidence 46899999999877 89998877543332 222221 233355667776433
No 26
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=58.05 E-value=9.5 Score=38.87 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=30.8
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG 48 (618)
|++||+|++||.-..+|.+.|+...-.+.+..+-.....+...+.|.-
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP 322 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC
Confidence 468999999999888999988875433344333222333445555553
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=57.77 E-value=27 Score=34.54 Aligned_cols=98 Identities=16% Similarity=0.278 Sum_probs=52.4
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee---------CCCeEEEEEC---C-eEEEE-eCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWN---D-MLVMV-APQ 66 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC---------G~d~v~~~~~---~-~l~l~-g~~ 66 (618)
+++||+|+++|.-+.+|.+.+.+..-.+....++... .....+.|. +.|..+-.|+ . .+..+ |..
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~ 206 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG-KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC-ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC
Confidence 4689999999998889999888765544444443221 133455554 3333333342 1 11111 211
Q ss_pred C--CceEeecCCCeEEeecCCc-eEEeccCcchhhh
Q 007100 67 A--EPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQ 99 (618)
Q Consensus 67 ~--~~~~~~~~~~~~l~~e~Dg-~riit~~~~~~l~ 99 (618)
+ ..+.|.-++..++..--|| |||.....-..+.
T Consensus 207 ~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence 1 2345544555555555665 7777655444443
No 28
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=56.86 E-value=34 Score=27.26 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHH
Q 007100 501 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYA 567 (618)
Q Consensus 501 kr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d~---e~r~~l~~ 567 (618)
...|......+...++|++-..+... ...+..+.-....+...|+.++|..+..++ + +. ......|.
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34555556667777777766555421 223333444556667777777776665543 1 11 23444555
Q ss_pred HcCCHHHHHHH
Q 007100 568 RIGMAKEAADA 578 (618)
Q Consensus 568 k~~~~~eA~~~ 578 (618)
+.|++.+|.+.
T Consensus 115 ~~~~~~~A~~~ 125 (136)
T 2fo7_A 115 KQGDYDEAIEY 125 (136)
T ss_dssp TTTCHHHHHHH
T ss_pred HHccHHHHHHH
Confidence 56666665544
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=56.79 E-value=36 Score=34.33 Aligned_cols=48 Identities=15% Similarity=0.044 Sum_probs=33.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
++.||+|+++|.-..+|.+.+.+.+-.+....+.. .......+.|..+
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDR 192 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCC
Confidence 46899999999888899999887654444444432 2335567777643
No 30
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=56.74 E-value=41 Score=36.69 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=95.3
Q ss_pred hHHHHHHHHHcCChhHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHHhcC------HHHHHHHHHhcCChHHHHH
Q 007100 324 EDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYK------HEFLKDFFLSTGQLQEVAF 397 (618)
Q Consensus 324 ~~~AL~kAi~S~D~dLI~~vLl~l~~~l~~~~f~~~l~~~p~A~~l~~~y~~~~~------~~~L~d~~~q~d~~~e~a~ 397 (618)
.+.|+..|..|.|.-.=+.+-=.|..+--.+. +|.-+ ......|+++.. .++|=.||...++|.++|.
T Consensus 165 ~~~~~~~~l~s~DelFH~~LYdWli~~gl~d~---LL~i~---sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~ 238 (525)
T 3i5p_A 165 RQKSYEAALKYNDRLFHYHMYDWLVSQNREEK---LLDIE---TPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAE 238 (525)
T ss_dssp CSTTHHHHSSSCCHHHHHHHHHHHHHTTCGGG---GGGCC---CTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcch---hhcCC---CchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHH
Confidence 34578888899888555544434444311112 22222 124556776532 5889999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhc-----c-cccHHHHHHHHHHHHHHHHHHHHhhccc-ccccC
Q 007100 398 LLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSET-----K-EHTFESKAAEEHAKLLRIQHELEVSTKQ-AIFVD 470 (618)
Q Consensus 398 l~l~~a~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~-----~-~~~f~~~~~~e~~~Ll~~Q~~Le~~~~~-~~f~~ 470 (618)
+...-|.+..+++ ..+|++.|.+|...-+.. + ...-....+++.++.-+.|..+-..... .+...
T Consensus 239 VL~~LA~s~~~i~--------L~~RIeyLsrA~~~a~~~~~~~~~~~~~~l~~~i~e~ldVA~IQ~~il~~l~~~~r~~~ 310 (525)
T 3i5p_A 239 ILYRLATSNFDIT--------LFERIEFLSRANGFCNSVSPLSQKQRIVQLASRIQDACEVAGIQGDILSLVYTDARIDS 310 (525)
T ss_dssp HHHHHHSSSSCCC--------HHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHhCCCCCC--------HHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCh
Confidence 9998876633332 348999999998632221 0 1111245688888888999887655431 11111
Q ss_pred CCHHHHHHHHHHcCCcchHHhHHhHcCcC
Q 007100 471 SSISDTIRTCIVLGNHRAAMKVKTEFKVS 499 (618)
Q Consensus 471 ~Sl~~Ti~~li~~~~~k~a~kl~k~fKVs 499 (618)
....+.+..| .|..-....|-++|-.|
T Consensus 311 e~~~~ai~~L--~~~Ll~is~Lyn~yA~p 337 (525)
T 3i5p_A 311 AIKDELIKTL--DGKILSTSELFNDFAVP 337 (525)
T ss_dssp HHHHHHHHHH--HHCCCCHHHHHHTTTTT
T ss_pred HHHHHHHHHh--cccCcCHHHHHHHHHhh
Confidence 1123445554 45666777777777654
No 31
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=56.34 E-value=1.7e+02 Score=29.41 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHcCCHHHHHHHH
Q 007100 537 VEACVDADEKGEALKYIPKL----V-D---PRERAEAYARIGMAKEAADAA 579 (618)
Q Consensus 537 v~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k~~~~~eA~~~a 579 (618)
..++.+.|+.++|..++.++ + + .-.+...|.+.|++.+|++..
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 352 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44455555555555544432 1 1 123445555555555555443
No 32
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=56.18 E-value=26 Score=33.86 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=42.8
Q ss_pred CcccCCCCeeEEEe------------cCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe-EEEEECCeEEEEeCCC
Q 007100 1 MAVSPNGNFVACFT------------HDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS-VLLYWNDMLVMVAPQA 67 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~------------~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~-v~~~~~~~l~l~g~~~ 67 (618)
+++||+|++++.-. .++.+++++.+-.+....+... ..|..+.|..+.. +++. +..+.++...+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~ 163 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGL-GRDLHVMDPEA 163 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEE-SSSEEEEETTT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEe-CCeEEEEECCC
Confidence 46899999888865 4688988876544444444443 3678899975544 4333 66777776654
Q ss_pred Cc
Q 007100 68 EP 69 (618)
Q Consensus 68 ~~ 69 (618)
..
T Consensus 164 ~~ 165 (337)
T 1pby_B 164 GT 165 (337)
T ss_dssp TE
T ss_pred Cc
Confidence 33
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=56.01 E-value=20 Score=36.00 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=34.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCC--------------CCCceeeeCCCeEEEE
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL--------------PPEQIAWCGMDSVLLY 55 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~--------------~p~~~~WCG~d~v~~~ 55 (618)
|+.||+|++++.-..+|.+.+++..-.+....+...... .+..+.|..++.+++.
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (425)
T 1r5m_A 155 VKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223 (425)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEE
T ss_pred EEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE
Confidence 467999999998888999988876544444444432211 1567777765554443
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=55.17 E-value=40 Score=32.59 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=31.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
+++||+|+++|.-..+|.+.+.+..-.+....+.. .......+.|..+
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~ 76 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSD 76 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTT
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCC
Confidence 46899999999888899998876543333333322 2234566777643
No 35
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=54.62 E-value=1.2e+02 Score=29.69 Aligned_cols=82 Identities=7% Similarity=-0.046 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHH
Q 007100 500 EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAY 566 (618)
Q Consensus 500 dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~ 566 (618)
+...|...-..+...|+|++-...... ...+..|.-...++...|+.++|..+..+. | + .......|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 345677777788888888876665532 234445556677788888888888776653 2 1 33566778
Q ss_pred HHcCCHHHHHHHHHh
Q 007100 567 ARIGMAKEAADAASQ 581 (618)
Q Consensus 567 ~k~~~~~eA~~~a~~ 581 (618)
.+.|++.+|++...+
T Consensus 292 ~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 292 INLGAYREAVSNFLT 306 (365)
T ss_dssp HHHTCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 888888888876543
No 36
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=54.26 E-value=72 Score=31.51 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=22.4
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSS 28 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~ 28 (618)
|++||+|++++.-..+|.+.+.+..-.+
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 4689999999998889999888754433
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=54.24 E-value=26 Score=35.03 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=32.0
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
|++||+|+++|.-..+|.+.+.+.+. +.+..+. ....+...+.|+.+.
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~-~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWNKTG-ALLNVLN-FHRAPIVSVKWNKDG 161 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC-CCCSCEEEEEECTTS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCC-Ceeeecc-CCCccEEEEEECCCC
Confidence 46899999999988899999886322 2223333 223456788887443
No 38
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=53.40 E-value=80 Score=29.25 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=32.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCC-CCccccccCCCCCCCCceeeeCCCeEE
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNF-SSPVIDESCESALPPEQIAWCGMDSVL 53 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~-~~~~~e~~~~~~~~p~~~~WCG~d~v~ 53 (618)
+++||+|+++|.- .+|.++++..+- .+............+..+.|..+...+
T Consensus 47 ~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 47 PNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp EEECTTSSEEEEE-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred eEECCCCCEEEEE-cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 4689999999884 588999987654 333322222222356778887555433
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=52.66 E-value=22 Score=36.07 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=36.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS 51 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~ 51 (618)
+++||+|++++.-+.+|.+.+++..-.+....+..........+.|..++.
T Consensus 253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence 467999999999888999999876555555555444444667888876543
No 40
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=52.58 E-value=36 Score=36.25 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=35.3
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG 48 (618)
|++||+|+++|.-..+|.+.|++.+-.+.+..+......++..+.|.-
T Consensus 494 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 494 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred EEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcC
Confidence 468999999999989999999887655555554432344667888865
No 41
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=51.77 E-value=49 Score=33.54 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=30.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|+++|.-..+|.+.|.+..-.+....+.. .......+.|.
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~ 174 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYF 174 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEc
Confidence 36799999999888899998887554444333332 22344566665
No 42
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=51.74 E-value=45 Score=31.91 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=30.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCC----ccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSS----PVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~----~~~e~~~~~~~~p~~~~WCG 48 (618)
|++||+|+++|.-..+|.+.|.+.+-.. ....+. ....+...+.|+.
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWAS 67 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECC
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcC
Confidence 4689999999998889999887654322 122222 2234567778864
No 43
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=50.87 E-value=0.33 Score=52.68 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCH
Q 007100 506 LKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDG 585 (618)
Q Consensus 506 lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~eA~kyI~ki~d~e~r~~l~~k~~~~~eA~~~a~~~kd~ 585 (618)
--+-+||+.++-.+||.|..+ -.....+.+-|.|.+.|..+.|.-.-..|++..+=.-.++++|+|.+|++.|.+.+++
T Consensus 121 eLi~ayAk~~rL~elEefl~~-~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTSC-CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHHHHHhhCcHHHHHHHHcC-CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 346699999999999999974 3355778999999999999999988889998888888999999999999999999999
Q ss_pred HHHHHHHHHcc
Q 007100 586 ELLGRLKLTFA 596 (618)
Q Consensus 586 ~~L~~i~~~~~ 596 (618)
...+++-.-|-
T Consensus 200 ktWKeV~~ACv 210 (624)
T 3lvg_A 200 RTWKEVCFACV 210 (624)
T ss_dssp CSHHHHTHHHH
T ss_pred hHHHHHHHHHh
Confidence 88888877663
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=50.83 E-value=49 Score=31.73 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=32.8
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
+++||+|++++.-+.+|.+.+++.+-.+.. .+. ....++..+.|..+.
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAYCG 277 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC-CCSSCEEEEEECTTS
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc-CCccceeEEEECCCC
Confidence 468999999999888999998876544432 221 223466788887443
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=49.68 E-value=1.8e+02 Score=27.73 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCcHHHHHHHH
Q 007100 286 AAVAAHADKSGRRKLAAMLV 305 (618)
Q Consensus 286 ~~IA~~A~~~gR~~LA~~Ll 305 (618)
-.+|...+..|+.+-|..++
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~ 26 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQF 26 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34566666666666666543
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=49.57 E-value=44 Score=34.39 Aligned_cols=99 Identities=4% Similarity=-0.065 Sum_probs=55.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEEEEECCeEEEEeCCCC------------
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE------------ 68 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~~~~~~~l~l~g~~~~------------ 68 (618)
++.||+|++++.-..+|.+.+.+..-.+.+..+... ..+...+.|.|+--+....+..+.+......
T Consensus 316 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 394 (464)
T 3v7d_B 316 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 394 (464)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCC
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCc
Confidence 367999999999888999999876555555555432 2344566665432222222333333332221
Q ss_pred -ceEeecCCCeEEeecCCceEEeccCcchhhhc
Q 007100 69 -PVQYFYDEPLVLIPECDGVRILSNSSMEFLQR 100 (618)
Q Consensus 69 -~~~~~~~~~~~l~~e~Dg~riit~~~~~~l~~ 100 (618)
.+.|..++..++..--..++|..-..-+++++
T Consensus 395 ~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 395 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp CEEEEEECSSEEEEEETTEEEEEETTTCCEEES
T ss_pred cEEEEEeCCCEEEEecCCeEEEEECCCCcEEeh
Confidence 23444444555444434678877666666654
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=49.32 E-value=1.5e+02 Score=26.74 Aligned_cols=82 Identities=18% Similarity=0.066 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C----CHHHHHHHH
Q 007100 500 EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V----DPRERAEAY 566 (618)
Q Consensus 500 dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~----d~e~r~~l~ 566 (618)
....|...-..+...|+|++-...... ...|..|.-...++...|+.++|..+..++ + -.-.....|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 345677778888899999887766632 344555666788888999999998777654 2 133567788
Q ss_pred HHcCCHHHHHHHHHh
Q 007100 567 ARIGMAKEAADAASQ 581 (618)
Q Consensus 567 ~k~~~~~eA~~~a~~ 581 (618)
.+.|++.+|.+...+
T Consensus 218 ~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 218 IAVKEYASALETLDA 232 (258)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 888999888876544
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.11 E-value=50 Score=33.44 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=34.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
++.||+|+++|.-..+|.+.|++..-.+.+..+. ........+.|.|+
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~ 187 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSWNRH 187 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEECCC
Confidence 4689999999998889999988765555555544 22345678888654
No 49
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=48.72 E-value=1.2e+02 Score=26.36 Aligned_cols=125 Identities=10% Similarity=-0.013 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCcchHHhHHhHcCcChHH--HHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCC
Q 007100 473 ISDTIRTCIVLGNHRAAMKVKTEFKVSEKR--WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADE 545 (618)
Q Consensus 473 l~~Ti~~li~~~~~k~a~kl~k~fKVsdkr--~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~ 545 (618)
+.+.+...+..|.. +++-.++++.- .|+-.-.++.+.|+|++-...... ...|-.|.-.-.++...|+
T Consensus 11 ~~~~l~~~~~~~~~-----l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 11 ISTAVIDAINSGAT-----LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHTSCC-----TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCC-----HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 44555555554431 23334444443 355555667778887776655531 2334444445567778888
Q ss_pred HHHHHHhhccC----C----CHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007100 546 KGEALKYIPKL----V----DPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRL 612 (618)
Q Consensus 546 ~~eA~kyI~ki----~----d~e~r~~l~~k~~~~~eA~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~l 612 (618)
.++|..+..+. | -.-..-..|.+.|++.+|++...+ .....| ++++.+.+..+++.|
T Consensus 86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~---------al~l~~-~~~~~~~A~~ll~~l 150 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL---------VIQHSN-DEKLKIKAQSYLDAI 150 (151)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHhCC-CHHHHHHHHHHHHhh
Confidence 88887665543 2 234667788899999999865443 233334 344777777777665
No 50
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=48.36 E-value=18 Score=36.75 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=28.6
Q ss_pred CcccCCCCeeEEEec--CCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTH--DGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~--~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|+++|+-+. +|.+.|.+..-.+...++... .....+.|.
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~--~~V~~v~fs 185 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR--GEVKDLHFS 185 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS--SCCCEEEEC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC--CceEEEEEc
Confidence 468999999988763 688888775444444444322 244556664
No 51
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=48.34 E-value=1e+02 Score=29.44 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=44.6
Q ss_pred CcccCCCCeeEEEe-cCCcEEEEeCCCCCcc----ccccCCCCCCCCceeeeCCCeEEEEECCeEEEEeCCCCce
Q 007100 1 MAVSPNGNFVACFT-HDGRLVVNNTNFSSPV----IDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPV 70 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~-~~g~l~v~ssd~~~~~----~e~~~~~~~~p~~~~WCG~d~v~~~~~~~l~l~g~~~~~~ 70 (618)
|++||+|+.+ ... .++.|+++..+-...+ ..+ ......|..|.|-.+..+.+.-++.|.++.|.+..+
T Consensus 177 i~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 177 LAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDEL 249 (296)
T ss_dssp EEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEE
T ss_pred EEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEE
Confidence 4689999988 433 3578888765411122 122 223446888999876667666688899999987654
No 52
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=48.15 E-value=96 Score=24.16 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcC
Q 007100 504 YWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARIG 570 (618)
Q Consensus 504 ~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d~---e~r~~l~~k~~ 570 (618)
|......+...++|++-..+... ...+..+.-...++...|+.++|..+..++ + +. ......|.+.|
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 44444455555555554433321 112222333455556666666666555442 1 11 24556677788
Q ss_pred CHHHHHHHH
Q 007100 571 MAKEAADAA 579 (618)
Q Consensus 571 ~~~eA~~~a 579 (618)
++.+|.+..
T Consensus 92 ~~~~A~~~~ 100 (125)
T 1na0_A 92 DYDEAIEYY 100 (125)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888877653
No 53
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=47.83 E-value=31 Score=34.91 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=39.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccc-cCCCCCCCCceeeeCCCeEEEE
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE-SCESALPPEQIAWCGMDSVLLY 55 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~-~~~~~~~p~~~~WCG~d~v~~~ 55 (618)
|++||+|++++.-..+|.+.|++..-.+...++ .......+..+.|..+..+++.
T Consensus 182 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT 237 (402)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE
T ss_pred EEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE
Confidence 468999999999888999999886655555565 2333334788999876655543
No 54
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=47.35 E-value=62 Score=25.11 Aligned_cols=78 Identities=14% Similarity=-0.076 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHH
Q 007100 502 RWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYAR 568 (618)
Q Consensus 502 r~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k 568 (618)
..|+..-..+...++|++-..+... ...|-.+.-...++...|+.++|..+..++ + + .......|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3445555556666666665554421 122223333445556666766666555442 1 1 2345667778
Q ss_pred cCCHHHHHHHH
Q 007100 569 IGMAKEAADAA 579 (618)
Q Consensus 569 ~~~~~eA~~~a 579 (618)
.|++.+|.+..
T Consensus 85 ~~~~~~A~~~~ 95 (118)
T 1elw_A 85 LNRFEEAKRTY 95 (118)
T ss_dssp TTCHHHHHHHH
T ss_pred HhhHHHHHHHH
Confidence 88888887654
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=46.51 E-value=62 Score=32.30 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=31.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCC----CCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNF----SSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~----~~~~~e~~~~~~~~p~~~~WCG 48 (618)
++.||+|+++|.-..+|.+.+.+.+- .+....+. ........+.|+-
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNA 123 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECS
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcC
Confidence 46799999999988899998876543 22333332 2334667888874
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=46.49 E-value=2.3e+02 Score=28.02 Aligned_cols=78 Identities=12% Similarity=-0.046 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc-----CCC------CCCchHHHHHHHhcCCHHHHHHhhccCCC-------------
Q 007100 503 WYWLKVFALATKRDWDALERFSKE-----KRP------PIGYRPFVEACVDADEKGEALKYIPKLVD------------- 558 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f~~s-----KKs------pIgyepfv~~~~~~~~~~eA~kyI~ki~d------------- 558 (618)
.+...-..+...++|++-...... .+. +..+.-...++...|+.++|..|+.+.-.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 567777788899999887666531 111 12233456677788888888877765421
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHH
Q 007100 559 -PRERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 559 -~e~r~~l~~k~~~~~eA~~~a~ 580 (618)
......+|.+.|++.+|.+...
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHH
Confidence 2234556677777777765533
No 57
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.29 E-value=61 Score=26.37 Aligned_cols=78 Identities=18% Similarity=0.067 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChhHHHHhhc-----cCCCCCCchHHHHHHHhcCCHHHHHHhhccC----C----CHHHHHHHHHHcC
Q 007100 504 YWLKVFALATKRDWDALERFSK-----EKRPPIGYRPFVEACVDADEKGEALKYIPKL----V----DPRERAEAYARIG 570 (618)
Q Consensus 504 ~~lkl~aLa~~~~wdeLe~f~~-----sKKspIgyepfv~~~~~~~~~~eA~kyI~ki----~----d~e~r~~l~~k~~ 570 (618)
|..+-..+.+.|+|++-..... ....|..|.-...++.+.|+.++|..+..+. | -.-.+...|...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3334445555566655444332 1223333444455556666666666555442 1 1335677888889
Q ss_pred CHHHHHHHHHh
Q 007100 571 MAKEAADAASQ 581 (618)
Q Consensus 571 ~~~eA~~~a~~ 581 (618)
++.+|++...+
T Consensus 87 ~~~~A~~~~~~ 97 (126)
T 3upv_A 87 EYASALETLDA 97 (126)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99988865443
No 58
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=46.11 E-value=1.1e+02 Score=30.93 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=24.1
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCC-CCcccccc
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNF-SSPVIDES 34 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~-~~~~~e~~ 34 (618)
+++||+|++++.-.. |.+.|..... .+.+..+.
T Consensus 291 ~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 291 VKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp EEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred EEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence 468999999998777 9998887654 44444443
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=45.88 E-value=39 Score=33.19 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=30.5
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCc---cccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSP---VIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~---~~e~~~~~~~~p~~~~WCG~ 49 (618)
+++||+|+++|.-..+|.+.+...+-.+. ...+.......+..+.|..+
T Consensus 102 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 102 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp EEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence 46799999999988899887765443332 11222222345667777643
No 60
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=45.83 E-value=57 Score=31.53 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=38.6
Q ss_pred CcccCCCCeeEEEec-CCcEEEEeCCCCCc-cccccCCCCCCCCc-eeeeCCCe-EEEEECC----eEEEEeCCC
Q 007100 1 MAVSPNGNFVACFTH-DGRLVVNNTNFSSP-VIDESCESALPPEQ-IAWCGMDS-VLLYWND----MLVMVAPQA 67 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~-~g~l~v~ssd~~~~-~~e~~~~~~~~p~~-~~WCG~d~-v~~~~~~----~l~l~g~~~ 67 (618)
+++||+|+++..-.. ++.+++++.+-.+. ...+... ..|.. +.|.-+.. +++...+ .+.++....
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG--QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC--SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC--CCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 478999997776655 68899887654444 3333322 25666 88874433 3333333 566665543
No 61
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=45.25 E-value=62 Score=31.42 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=54.8
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCC---CCCCCCceeeeCCC-eEEEE-EC-CeEEEEeCC--------
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE---SALPPEQIAWCGMD-SVLLY-WN-DMLVMVAPQ-------- 66 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~---~~~~p~~~~WCG~d-~v~~~-~~-~~l~l~g~~-------- 66 (618)
+++||+|++++.-+.+|.++++...-.+....+... ....|..+.|-.+. .+.+. .. ..+.++.+.
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 578999999888778899988876544444444432 12234457776322 22222 22 445444432
Q ss_pred ----CCceEeecCCC-eEEeecC-CceEEeccCcchhhhccc
Q 007100 67 ----AEPVQYFYDEP-LVLIPEC-DGVRILSNSSMEFLQRVP 102 (618)
Q Consensus 67 ----~~~~~~~~~~~-~~l~~e~-Dg~riit~~~~~~l~~Vp 102 (618)
+..+.|.-++. +++...- +.|.++....-+.+..++
T Consensus 270 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 270 AAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp ECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 22344444444 3333322 457777666555555444
No 62
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=45.25 E-value=83 Score=30.20 Aligned_cols=65 Identities=8% Similarity=0.122 Sum_probs=36.1
Q ss_pred CcccCCCCeeEEEe-cCCcEEEEeCCCCCccc-----cccCCCCCCCCceeeeCCCe-EEEE--ECCeEEEEeC
Q 007100 1 MAVSPNGNFVACFT-HDGRLVVNNTNFSSPVI-----DESCESALPPEQIAWCGMDS-VLLY--WNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~-~~g~l~v~ssd~~~~~~-----e~~~~~~~~p~~~~WCG~d~-v~~~--~~~~l~l~g~ 65 (618)
+++||+|++++.-. .+|.+++++.+-...+. .+.......|..+.|..+.. +++. ..+.+.++..
T Consensus 134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~ 207 (343)
T 1ri6_A 134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 207 (343)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 57899999887655 57888887644312221 22222234677788875443 3222 2344555443
No 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=44.92 E-value=56 Score=29.25 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=61.7
Q ss_pred HcCCcchHHhHHhHcCcChHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC
Q 007100 482 VLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL 556 (618)
Q Consensus 482 ~~~~~k~a~kl~k~fKVsdkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki 556 (618)
..|+...|...-++.-=+....|+..-.++...|+|++-...... ...+..|--...++...|+.++|..+..++
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp HTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 445555554444433222445677777778888888776655431 234444555667778888888887666543
Q ss_pred C------------------------CHHHHHHHHHHcCCHHHHHHHHH
Q 007100 557 V------------------------DPRERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 557 ~------------------------d~e~r~~l~~k~~~~~eA~~~a~ 580 (618)
- -.-.....|.+.|++.+|.+...
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 98 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1 12456777888889888886643
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=44.69 E-value=1.3e+02 Score=27.31 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=67.6
Q ss_pred HHHHcCCcchHHhHHhH-cCc--ChHHHHHHHHHHHHhcCChhHHHHhhcc--C--CCCC---CchHHHHHHHhcCCHHH
Q 007100 479 TCIVLGNHRAAMKVKTE-FKV--SEKRWYWLKVFALATKRDWDALERFSKE--K--RPPI---GYRPFVEACVDADEKGE 548 (618)
Q Consensus 479 ~li~~~~~k~a~kl~k~-fKV--sdkr~~~lkl~aLa~~~~wdeLe~f~~s--K--KspI---gyepfv~~~~~~~~~~e 548 (618)
.+...|+.+.|.+.-++ .+. .+...|......+...++|++-..+... + ..|- .+.-...++...|+.++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 34566777766554332 222 3456777788889999999887766532 2 2222 22335567788999999
Q ss_pred HHHhhccCC----C----HHHHHHHHHHcCCHHHHHHHHHh
Q 007100 549 ALKYIPKLV----D----PRERAEAYARIGMAKEAADAASQ 581 (618)
Q Consensus 549 A~kyI~ki~----d----~e~r~~l~~k~~~~~eA~~~a~~ 581 (618)
|..++.+.- + ......+|.+.|++.+|.+...+
T Consensus 160 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 160 AKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 988877642 3 23456678889999999877655
No 65
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=44.47 E-value=1.3e+02 Score=28.83 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=37.5
Q ss_pred CcccCCCCeeEEEec-CCcEEEEeCCCCCc---cccccCCCCCCCCceeeeCCCe-EEEEE--CCeEEEEeCC
Q 007100 1 MAVSPNGNFVACFTH-DGRLVVNNTNFSSP---VIDESCESALPPEQIAWCGMDS-VLLYW--NDMLVMVAPQ 66 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~-~g~l~v~ssd~~~~---~~e~~~~~~~~p~~~~WCG~d~-v~~~~--~~~l~l~g~~ 66 (618)
+++||+|+++..-+. ++.+.++..+-.+. +..+..+ ..|..+.|--+.. +++.- .+.+.++.+.
T Consensus 181 ~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 181 ITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred eEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 468999997766553 68888887654444 4444433 4677888874433 32222 2345555543
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=44.46 E-value=79 Score=26.82 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHH
Q 007100 501 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYA 567 (618)
Q Consensus 501 kr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~ 567 (618)
...|......+...++|++-...... ...+..+.-...++...|+.++|..++.++ + + ......+|.
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 45666677778888888876665532 223333444566777788888887766553 1 1 234455667
Q ss_pred HcCCHHHHHHHHH
Q 007100 568 RIGMAKEAADAAS 580 (618)
Q Consensus 568 k~~~~~eA~~~a~ 580 (618)
+.|++.+|.+...
T Consensus 156 ~~~~~~~A~~~~~ 168 (186)
T 3as5_A 156 QMGRHEEALPHFK 168 (186)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 7777777765543
No 67
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=44.01 E-value=69 Score=31.09 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=38.2
Q ss_pred CcccCCCCeeEEEec-------CCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe-EEEE-E-CCeEEEEeCC
Q 007100 1 MAVSPNGNFVACFTH-------DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS-VLLY-W-NDMLVMVAPQ 66 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~-------~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~-v~~~-~-~~~l~l~g~~ 66 (618)
+++||+|+.+..-+. +|.+++++.+-.+....+.... .|..+.|..+.. +++. . .+.+.++.+.
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 468999998866553 4578888765445555555433 577788875433 3322 2 2455555543
No 68
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=43.61 E-value=1.2e+02 Score=23.86 Aligned_cols=78 Identities=9% Similarity=-0.047 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHH
Q 007100 502 RWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYAR 568 (618)
Q Consensus 502 r~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k 568 (618)
..|+..-..+...++|++-..+... ...+-.+.-...++...|+.++|..+..++ + + .-.....|.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 3445555556666666655544421 123333444555666677777666555442 1 1 2344567777
Q ss_pred cCCHHHHHHHH
Q 007100 569 IGMAKEAADAA 579 (618)
Q Consensus 569 ~~~~~eA~~~a 579 (618)
.|++.+|++..
T Consensus 93 ~~~~~~A~~~~ 103 (131)
T 2vyi_A 93 LNKHVEAVAYY 103 (131)
T ss_dssp TTCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 88888777643
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=43.24 E-value=19 Score=35.24 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=33.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
+++||+|+++|.-..+|.|.|.+..-.+.+..+... ..+...+.|..+.
T Consensus 279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g 327 (368)
T 3mmy_A 279 IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNG 327 (368)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTS
T ss_pred EEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCC
Confidence 468999999999888999999876544455444422 3355667776543
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.95 E-value=2.4e+02 Score=27.22 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHHHhCcHHHHHHHHhc--CCCCccch-------hhhhhcCchHHHHHHHHHcCChhH
Q 007100 289 AAHADKSGRRKLAAMLVEH--EPRSSKQV-------PLLLSIGEEDTALVKATESGDTDL 339 (618)
Q Consensus 289 A~~A~~~gR~~LA~~Ll~~--E~~~~~qV-------~lLl~~~~~~~AL~kAi~S~D~dL 339 (618)
.+.++-.|..+-|+..++. +.+|...+ ..++.+|+++.|+..--.+..+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~ 65 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPEL 65 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhH
Confidence 4567888888888887653 33333322 346778888888874433333443
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=42.92 E-value=60 Score=32.44 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=40.9
Q ss_pred CcccCC-CCeeEEEecCCcEEEEeCCCCCccccccCCC-----CCCCCceeeeCCC--eEEEEECC----eEEEEeC
Q 007100 1 MAVSPN-GNFVACFTHDGRLVVNNTNFSSPVIDESCES-----ALPPEQIAWCGMD--SVLLYWND----MLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~-g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~-----~~~p~~~~WCG~d--~v~~~~~~----~l~l~g~ 65 (618)
|++||+ ++.++.-..+|.+.+.+..-.+....+.... ...+..+.|..++ .++..-.+ .|.+...
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 467888 6778877788999888766555555554332 3456778887553 34444444 5555543
No 72
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=42.62 E-value=90 Score=31.09 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=35.3
Q ss_pred CcccCCCCeeEEEecCCc-EEEEeCCCCCccccccCC-CCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGR-LVVNNTNFSSPVIDESCE-SALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~-l~v~ssd~~~~~~e~~~~-~~~~p~~~~WCG~d 50 (618)
+++||+|+++|--..+|+ +.|.+..-.+.+..+..+ ...+...+.|.-+.
T Consensus 201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~ 252 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252 (355)
T ss_dssp EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence 468999999999888998 888876555555555522 34456677776543
No 73
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.53 E-value=2.4e+02 Score=27.17 Aligned_cols=133 Identities=9% Similarity=-0.039 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCHHHHH-------HHHHHcCCcchHHhHHhHcCcChHHHHHHHHHHHHhcCChh
Q 007100 446 AEEHAKLLRIQHELEVSTKQAIFVDSSISDTI-------RTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWD 518 (618)
Q Consensus 446 ~~e~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~Ti-------~~li~~~~~k~a~kl~k~fKVsdkr~~~lkl~aLa~~~~wd 518 (618)
++++.-+-.+|..+..-- .+...|....+ +..+..|+.+.|..--+.-.-|+-+..-.-...+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~---~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQ---RVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHH---hcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence 344444455666665421 13344444322 23455676655543222223333333444445566677776
Q ss_pred HHHH----hhccC---CCCCCchHHHHHHHhcCCHHHHHHhhccCCCHH---HHHHHHHHcCCHHHHHHHHHh
Q 007100 519 ALER----FSKEK---RPPIGYRPFVEACVDADEKGEALKYIPKLVDPR---ERAEAYARIGMAKEAADAASQ 581 (618)
Q Consensus 519 eLe~----f~~sK---KspIgyepfv~~~~~~~~~~eA~kyI~ki~d~e---~r~~l~~k~~~~~eA~~~a~~ 581 (618)
+-.+ ..... ..|-.+-.-..++...|+.++|..++.+-.+.+ .+..+|.+.|.+.+|.+...+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5443 33321 123223334467788999999999998833343 567889999999999876544
No 74
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=42.30 E-value=58 Score=34.56 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=41.7
Q ss_pred CcccCC-CCeeEEEecCCcEEEEeCCCCCccccccC---CCCCCCCceeeeCCCeEEEEE-CCeEEEEeCC
Q 007100 1 MAVSPN-GNFVACFTHDGRLVVNNTNFSSPVIDESC---ESALPPEQIAWCGMDSVLLYW-NDMLVMVAPQ 66 (618)
Q Consensus 1 ~~~Sp~-g~~iAl~~~~g~l~v~ssd~~~~~~e~~~---~~~~~p~~~~WCG~d~v~~~~-~~~l~l~g~~ 66 (618)
+++||+ |++++.-+.+|.+.+.+..-.+.+..+.. ....+...+.|+.++.++..- +..+.+....
T Consensus 212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECC
Confidence 467999 99999988899999987655555555522 334466788887222233222 3345555543
No 75
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=41.58 E-value=2.5e+02 Score=27.07 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=42.0
Q ss_pred HHHcCCcchHHhHHhH-cCcC--hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHH
Q 007100 480 CIVLGNHRAAMKVKTE-FKVS--EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALK 551 (618)
Q Consensus 480 li~~~~~k~a~kl~k~-fKVs--dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~k 551 (618)
+...|+.+.|...-++ .++. ....|......+...|+|++-...... ...+..|.-...++.+.|+.++|..
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455666655443222 2222 234666677777778887776555431 2233344445666667777777665
Q ss_pred hhcc
Q 007100 552 YIPK 555 (618)
Q Consensus 552 yI~k 555 (618)
+..+
T Consensus 307 ~~~~ 310 (368)
T 1fch_A 307 HFLE 310 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=41.23 E-value=2.4e+02 Score=26.77 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CHH----------
Q 007100 501 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DPR---------- 560 (618)
Q Consensus 501 kr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d~e---------- 560 (618)
...|......+...|+|++-...... ...|-.+.-...++...|+.++|..++.++ + +..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 34566667777777777776655432 123333444556667777777777665543 2 111
Q ss_pred -----HHHHHHHHcCCHHHHHHHHH
Q 007100 561 -----ERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 561 -----~r~~l~~k~~~~~eA~~~a~ 580 (618)
.....+.+.|++.+|++...
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22455777777777776543
No 77
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=41.03 E-value=43 Score=33.99 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTN 25 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd 25 (618)
+++||+|++||.-..+|.+.|++.+
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~ 58 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQE 58 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCeEEEEEec
Confidence 4689999999998889999887754
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.35 E-value=1.4e+02 Score=30.06 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=33.5
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG 48 (618)
++.||+|+++|.-..+|.+.+++..-.+....+.. .......+.|+.
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p 269 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCP 269 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-CSSCCCEEEECT
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-CcceEEEEEECC
Confidence 46899999999988899999887654444434332 234677888884
No 79
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=39.69 E-value=1.4e+02 Score=28.55 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=29.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|++++.-..+|.+.+....-.+.+..+......+...+.|.
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEEC
Confidence 36789999998888899998887654444433322222233445565
No 80
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=39.57 E-value=55 Score=32.33 Aligned_cols=46 Identities=7% Similarity=0.015 Sum_probs=29.0
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|++++.-..+|.+.+.+..-......+... ......+.|.
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~ 235 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFF 235 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEc
Confidence 467999999988788999988765433433333322 2244555665
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=38.99 E-value=95 Score=29.87 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=50.2
Q ss_pred CcccC-CCCeeEEEecCCcEEEEeCCCC------CccccccCCC--------CCCCCceeeeCCCe-EEEEE-CCeEEEE
Q 007100 1 MAVSP-NGNFVACFTHDGRLVVNNTNFS------SPVIDESCES--------ALPPEQIAWCGMDS-VLLYW-NDMLVMV 63 (618)
Q Consensus 1 ~~~Sp-~g~~iAl~~~~g~l~v~ssd~~------~~~~e~~~~~--------~~~p~~~~WCG~d~-v~~~~-~~~l~l~ 63 (618)
+++|| +|++++.-..+|.+.+..-+.. +....+.... ..+...+.|..+.. ++..- +..|.+.
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 46789 9999999888999887655444 3344444321 22556777764332 33333 3355666
Q ss_pred eCCCCceEeecC----CCeEEeecCCceEEeccC
Q 007100 64 APQAEPVQYFYD----EPLVLIPECDGVRILSNS 93 (618)
Q Consensus 64 g~~~~~~~~~~~----~~~~l~~e~Dg~riit~~ 93 (618)
..........+. .++.-+. .||-.++|..
T Consensus 279 d~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s 311 (342)
T 1yfq_A 279 NLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLAT 311 (342)
T ss_dssp ETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEEE
T ss_pred cCccHhHhhhhhcccCCCceEec-CCCCeEEEEe
Confidence 555433333332 2232223 6666666543
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=38.88 E-value=44 Score=33.28 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.0
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCcccccc
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 34 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~ 34 (618)
+++||+|+++|.-..+|.+.|++..-.+.+..+.
T Consensus 297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 4679999999998889999998765555554544
No 83
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=38.84 E-value=2.7e+02 Score=26.76 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C----CHHHHHHHHH
Q 007100 501 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V----DPRERAEAYA 567 (618)
Q Consensus 501 kr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~----d~e~r~~l~~ 567 (618)
...|......+...|+|++-...... ...|-.|.-...++...|+.++|..+..++ + -......+|.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46778888899999999987666532 233445556778889999999998877664 2 2345678889
Q ss_pred HcCCHHHHHHHHHh
Q 007100 568 RIGMAKEAADAASQ 581 (618)
Q Consensus 568 k~~~~~eA~~~a~~ 581 (618)
+.|++.+|++...+
T Consensus 297 ~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 297 NLGAHREAVEHFLE 310 (368)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999876543
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=38.66 E-value=59 Score=38.59 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=43.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccc--------cCCCCCCCCceeeeCCCeEEEEECCeEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE--------SCESALPPEQIAWCGMDSVLLYWNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~--------~~~~~~~p~~~~WCG~d~v~~~~~~~l~l~g~ 65 (618)
+++||+|+++|.-..+|.+.|++..-.+.+..+ .......+..+.|..+...+++-...+.+...
T Consensus 1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~ 1205 (1249)
T 3sfz_A 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNV 1205 (1249)
T ss_dssp EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCS
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEEC
Confidence 468999999999888998888765433333222 11234467789998777666666666666653
No 85
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=37.69 E-value=1.3e+02 Score=29.41 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=30.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeC-CCCCccccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNT-NFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ss-d~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
+++||+|++||.-..+|.+.+... ........++.. .+...+.|..+
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~ 266 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG--STINQIAFNPK 266 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS--SCEEEEEECSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC--CcEEEEEECCC
Confidence 468999999999888999988875 333333333322 24556667643
No 86
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=37.68 E-value=26 Score=31.62 Aligned_cols=107 Identities=14% Similarity=0.178 Sum_probs=68.1
Q ss_pred ccCCCHHHHHHHHHHcCCcchHHhHHhHcCcChHHHHHHHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHH
Q 007100 468 FVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKG 547 (618)
Q Consensus 468 f~~~Sl~~Ti~~li~~~~~k~a~kl~k~fKVsdkr~~~lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~ 547 (618)
+.++|+.+++...=. .|+.| ..++.|++.++|.+..+++.. |.||.-+
T Consensus 40 ~~~l~~~~a~~rIk~-----~a~~i-------------~~vk~lI~k~~W~~vrn~LR~---~~~~Lr~----------- 87 (149)
T 1vyk_A 40 LQPLPPTEAAQRAKV-----SASEI-------------LNVKQFIDRKAWPSLQNDLRL---RASYLRY----------- 87 (149)
T ss_dssp ECCCCHHHHHHHHHH-----HHHHH-------------HTTHHHHHTTCHHHHHHHHHH---HHHHHHH-----------
T ss_pred cCCCCHHHHHHHHHH-----HHHHH-------------HHHHHHhhhccHHHHHHHHHH---hHHHHHH-----------
Confidence 568889998855322 23222 234488999999999999972 2222211
Q ss_pred HHHHhhccCCCHHHHH---HHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHccCChHHHHHHHHHHHHhh
Q 007100 548 EALKYIPKLVDPRERA---EAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLS 613 (618)
Q Consensus 548 eA~kyI~ki~d~e~r~---~l~~k~~~~~eA~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~l~ 613 (618)
.-...|+.++ .++|- +++-++-..-+-.+.|.+.||.......+.. +...++.++++|+
T Consensus 88 Dl~~li~slp-~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~------t~~~ld~vl~~l~ 149 (149)
T 1vyk_A 88 DLKTVISAKP-KDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQ------TVSNINEVLAKLG 149 (149)
T ss_dssp HHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHHHHHhC
Confidence 1223445565 44443 4555666667778889999999877776665 5666777777663
No 87
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=37.63 E-value=99 Score=34.07 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=37.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCC--ccccccCCCCCCCCceeeeCCCe-EEEEECCeEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSS--PVIDESCESALPPEQIAWCGMDS-VLLYWNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~--~~~e~~~~~~~~p~~~~WCG~d~-v~~~~~~~l~l~g~ 65 (618)
+++||+|++||.-.. +.+|+++.+-.. ....+. .....+..+.|.-+.. |+..-++.|+++..
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~ 179 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIRGRNLWVIDL 179 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEETTEEEEEET
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEeCCcEEEEec
Confidence 468999999998664 899998754331 121221 2223456788874443 44444556666544
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=37.45 E-value=57 Score=32.25 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.4
Q ss_pred CcccCCCCeeEEEecCCcEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNT 24 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ss 24 (618)
|++||+|+++|.-..+|.+.+.+.
T Consensus 152 ~~~~~~~~~l~~~~~d~~i~iwd~ 175 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADRKAYVLSA 175 (377)
T ss_dssp EEECTTSSEEEEEESSSCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEEE
Confidence 468999999999888999988764
No 89
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=36.82 E-value=1.4e+02 Score=24.80 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHcCCH
Q 007100 506 LKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYARIGMA 572 (618)
Q Consensus 506 lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k~~~~ 572 (618)
-.-..+...|+|++-..+... ...|-.|.-...++...|+.++|..+..+. | + .-.....|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 334445555555554444321 112222223344555666666665554432 1 1 23566778888999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccCC---hHHHHHHHHHHHHhhh
Q 007100 573 KEAADAASQAKDGELLGRLKLTFAQN---AAASSIFDTLRDRLSF 614 (618)
Q Consensus 573 ~eA~~~a~~~kd~~~L~~i~~~~~~~---~~~~~~i~~~~~~l~~ 614 (618)
.+|++...+. ....|++ ..+...+..++.++.+
T Consensus 103 ~~A~~~~~~a---------l~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 103 DGAESGFYSA---------RALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHHHHH---------HHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 8888765332 2222333 2455566666666554
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=36.47 E-value=50 Score=36.56 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=39.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCc-------ccccc---CCCCCCCCceeeeCCCeEEEE-ECCeEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSP-------VIDES---CESALPPEQIAWCGMDSVLLY-WNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~-------~~e~~---~~~~~~p~~~~WCG~d~v~~~-~~~~l~l~g~ 65 (618)
++.||+|++||.-+++|++.|.+..=... +..+. .+.......+.|..+. +++. .+..+.+...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~ 209 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTV 209 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECC
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEEC
Confidence 47899999999999999998877543321 12222 2233466788888665 4433 2344444433
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=36.30 E-value=1.7e+02 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=33.2
Q ss_pred CcccC--CCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEE
Q 007100 1 MAVSP--NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVL 53 (618)
Q Consensus 1 ~~~Sp--~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~ 53 (618)
|++|| +|++++--..+|.+.+.+..-.+.+..+..........+.|..+..++
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l 185 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL 185 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE
Confidence 46789 999999888899998887554444433333333356677776444433
No 92
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=36.30 E-value=3.7e+02 Score=27.51 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred hhHHHHHHhcChhHHHHHHHHHHhcCHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhh
Q 007100 353 ALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSL 432 (618)
Q Consensus 353 ~~~f~~~l~~~p~A~~l~~~y~~~~~~~~L~d~~~q~d~~~e~a~l~l~~a~~~~~~~~~~~~~~~~~~k~~~L~~a~~~ 432 (618)
...|.+.+...|. ...+.... ..|...+++ +.|.-.+..++...... ...+......
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~-~~A~~~~~~~~~~~~~~------------~~~~~~l~~~ 319 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLA---------LTLADKENS-QEFFKFFQKAVDLNPEY------------PPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHH---------HHTCCSSCC-HHHHHHHHHHHHHCTTC------------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-chHHHHHH---------HHHHHhcCH-HHHHHHHHHHhccCCCC------------HHHHHHHHHH
Q ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHcCCcchHHhHHhHc---CcChHHHHHHHHH
Q 007100 433 FSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEF---KVSEKRWYWLKVF 509 (618)
Q Consensus 433 ~~~~~~~~f~~~~~~e~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~Ti~~li~~~~~k~a~kl~k~f---KVsdkr~~~lkl~ 509 (618)
|...++ ..++++...+.++. ..-........-..+...|+.+.|...-++. .-.+...|...-.
T Consensus 320 ~~~~~~---~~~A~~~~~~a~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 320 YFILQD---YKNAKEDFQKAQSL----------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386 (537)
T ss_dssp HHHTTC---HHHHHHHHHHHHHH----------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHhcCC---HHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q ss_pred HHHhcCChhHHHHhhcc-----CCCCCCchHHH------HHHHhc----------CCHHHHHHhhccCC--------CHH
Q 007100 510 ALATKRDWDALERFSKE-----KRPPIGYRPFV------EACVDA----------DEKGEALKYIPKLV--------DPR 560 (618)
Q Consensus 510 aLa~~~~wdeLe~f~~s-----KKspIgyepfv------~~~~~~----------~~~~eA~kyI~ki~--------d~e 560 (618)
.+...|+|++-...... ...+-.+.-.. .++... |+.++|..+..++- -..
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHH-------------HHhcCCHHHHHHHHHHccCChHHHHHHHHHHHHhhhcCC
Q 007100 561 ERAEAYARIGMAKEAADA-------------ASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGV 617 (618)
Q Consensus 561 ~r~~l~~k~~~~~eA~~~-------------a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~l~~~~~ 617 (618)
....+|.+.|++.+|++. +.+......-..+......++.+.+.+.+++..++.+|+
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 536 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAKGM 536 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHHHHHHHHhccccHHHHHHHhhHHHHHhhccC
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=36.11 E-value=60 Score=32.43 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=20.3
Q ss_pred CcccCCCCeeEEEecCCcEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNT 24 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ss 24 (618)
++.||+|+++|.-..+|.+.|...
T Consensus 246 ~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 246 MKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EEECTTSCEEEEEETTCEEEEEES
T ss_pred EEECCCCCEEEEEECCCEEEEEEc
Confidence 468999999999888999888763
No 94
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=35.88 E-value=41 Score=35.16 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=37.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCC------CCCCCCceeeeCCCeEEEEE
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE------SALPPEQIAWCGMDSVLLYW 56 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~------~~~~p~~~~WCG~d~v~~~~ 56 (618)
++.||+|+++|.-+.+|.+.++..+ .+....+... .......+.|.++...++.+
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 4679999999998899999998766 2222222211 11245689999988777655
No 95
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=34.06 E-value=1e+02 Score=30.73 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=29.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|++||--..+|.+.|.+..-.+.+..+... ......+.|.
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~ 178 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAAS 178 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEec
Confidence 468999999998888999988765444444444322 2234455554
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=33.96 E-value=1.2e+02 Score=25.53 Aligned_cols=82 Identities=12% Similarity=-0.027 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccCC-----C---HHHHHHHH
Q 007100 500 EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKLV-----D---PRERAEAY 566 (618)
Q Consensus 500 dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki~-----d---~e~r~~l~ 566 (618)
+...|+.....+...++|++-..+... ...+-.+.-....+...|+.++|..+..++- + .-....+|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 345677777788889999887666532 2233444456677888999999988776642 2 23456788
Q ss_pred HHcCCHHHHHHHHHh
Q 007100 567 ARIGMAKEAADAASQ 581 (618)
Q Consensus 567 ~k~~~~~eA~~~a~~ 581 (618)
.+.|++.+|++...+
T Consensus 121 ~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 121 DNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHH
Confidence 899999999887554
No 97
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=33.84 E-value=79 Score=28.57 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHH
Q 007100 500 EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAY 566 (618)
Q Consensus 500 dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~ 566 (618)
+...|......+...++|++-..+... ...+-.+.-...++...|+.++|..++.++ + + .......|
T Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345677777888888888887666532 233444455667778888888887776653 2 1 23455667
Q ss_pred HHcCCHHHHHHHH
Q 007100 567 ARIGMAKEAADAA 579 (618)
Q Consensus 567 ~k~~~~~eA~~~a 579 (618)
.+.|++.+|.+..
T Consensus 204 ~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 204 AYKENREKALEML 216 (243)
T ss_dssp HHTTCTTHHHHHH
T ss_pred HHccCHHHHHHHH
Confidence 7777777776543
No 98
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=33.49 E-value=83 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=20.7
Q ss_pred cccCCCCeeEEEecCCcEEEEeCCCCCccccc
Q 007100 2 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 33 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~ 33 (618)
++||+|+++|--..+|.+.|.+..-.+....+
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence 56788888777777888877765433333333
No 99
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=33.26 E-value=64 Score=32.01 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=32.9
Q ss_pred CcccCCCCeeEEEecC---CcEEEEeCCCCCccccccCC------------CCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHD---GRLVVNNTNFSSPVIDESCE------------SALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~---g~l~v~ssd~~~~~~e~~~~------------~~~~p~~~~WCG 48 (618)
|++||+|++++.-..+ |.+.+++..-.+.+..+... .......+.|..
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC
Confidence 4679999999998888 89988876555555554431 233556777764
No 100
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=33.26 E-value=29 Score=30.84 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=29.7
Q ss_pred cchhhhhhcCchHHHHHHHHHcCChhHHHHHHHHHHhhCChhH
Q 007100 313 KQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALE 355 (618)
Q Consensus 313 ~qV~lLl~~~~~~~AL~kAi~S~D~dLI~~vLl~l~~~l~~~~ 355 (618)
.++--|+.-|+||.|..+|+.|+|-.++-. +-.+.+++.
T Consensus 5 ~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~----lc~~~dp~~ 43 (139)
T 2vxg_A 5 DSIKQLLMAGQINKAFHQALLANDLGLVEF----TLRHTDSNQ 43 (139)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCHHHHHH----HHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHhCcHHHHHH----HHHcCCHHH
Confidence 457789999999999999999999884444 344455544
No 101
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=33.24 E-value=43 Score=34.94 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=38.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCc--cccc------c--CCCCCCCCceeeeCCCeEEEEE
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSP--VIDE------S--CESALPPEQIAWCGMDSVLLYW 56 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~--~~e~------~--~~~~~~p~~~~WCG~d~v~~~~ 56 (618)
++.||+| +++-..+|.+.+++.+.... ..++ + .+....+..+.|.++...++.|
T Consensus 168 v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 168 FDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 4789999 45556788888888877663 3333 1 1134577899999998888887
No 102
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=33.12 E-value=1.2e+02 Score=30.89 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=20.8
Q ss_pred cccCCCCeeEEEecCCcEEEEeCCCCCc
Q 007100 2 AVSPNGNFVACFTHDGRLVVNNTNFSSP 29 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~g~l~v~ssd~~~~ 29 (618)
++||+|+++|--..+|.+.+....-.+.
T Consensus 241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 241 RPNQDGTLIASCSNDQTVRVWVVATKEC 268 (410)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 5789999998888889887776543333
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=32.78 E-value=1e+02 Score=30.35 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=32.3
Q ss_pred CcccC-CCCeeEEEecCCcEEEEeCCCCCcccccc------------CCCCCCCCceeeeC
Q 007100 1 MAVSP-NGNFVACFTHDGRLVVNNTNFSSPVIDES------------CESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp-~g~~iAl~~~~g~l~v~ssd~~~~~~e~~------------~~~~~~p~~~~WCG 48 (618)
|++|| +|+++|.-..+|.+.|.+.+-.+....+. .........+.|+.
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 47899 99999998889999888755443332221 11344567788864
No 104
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=32.69 E-value=2e+02 Score=25.12 Aligned_cols=104 Identities=12% Similarity=-0.013 Sum_probs=67.9
Q ss_pred HHHHHcCCcchHHhHHhH-cC--cChHHHHHHHHHHHHhc-CChhHHHHhhcc--C--CCC---CCchHHHHHHHhcCCH
Q 007100 478 RTCIVLGNHRAAMKVKTE-FK--VSEKRWYWLKVFALATK-RDWDALERFSKE--K--RPP---IGYRPFVEACVDADEK 546 (618)
Q Consensus 478 ~~li~~~~~k~a~kl~k~-fK--Vsdkr~~~lkl~aLa~~-~~wdeLe~f~~s--K--Ksp---Igyepfv~~~~~~~~~ 546 (618)
..+...|+.+.|.+.-++ .+ -.....|......+... ++|++-...... + ..| ..+.-...++...|+.
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 334566777766554332 22 23455777788888999 999887766532 2 222 2233456678889999
Q ss_pred HHHHHhhccCC----C----HHHHHHHHHHcCCHHHHHHHHHh
Q 007100 547 GEALKYIPKLV----D----PRERAEAYARIGMAKEAADAASQ 581 (618)
Q Consensus 547 ~eA~kyI~ki~----d----~e~r~~l~~k~~~~~eA~~~a~~ 581 (618)
++|..+..++- + ......+|.+.|++.+|.+...+
T Consensus 130 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99988877642 3 12456678899999999877544
No 105
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.53 E-value=61 Score=32.66 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=31.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCcccccc---CCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES---CESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~---~~~~~~p~~~~WCG~ 49 (618)
+++||+|++++.-..+|.+.|.+..-.+....+. .........+.|..+
T Consensus 304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC
Confidence 3679999999998889999998765544443332 122334455555543
No 106
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=32.40 E-value=1.2e+02 Score=29.24 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=55.6
Q ss_pred CcccC-CCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCc-----------eeeeCCCeEEEEEC----CeEEEEe
Q 007100 1 MAVSP-NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQ-----------IAWCGMDSVLLYWN----DMLVMVA 64 (618)
Q Consensus 1 ~~~Sp-~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~-----------~~WCG~d~v~~~~~----~~l~l~g 64 (618)
+++|| ++..+|--..+|.+.+.+..-......+.......... +.=++.|..|--|+ ..+..+.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~ 225 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC
Confidence 35788 56788877778988887643333222222221111222 33344444445553 1122222
Q ss_pred CCCCc---eEeecCCCeEEeecCCc-eEEeccCcchhhhccchhhhhhhc
Q 007100 65 PQAEP---VQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFA 110 (618)
Q Consensus 65 ~~~~~---~~~~~~~~~~l~~e~Dg-~riit~~~~~~l~~Vp~~~~~if~ 110 (618)
..... +.|.-+++.++..--|| |||........++.++.....+..
T Consensus 226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~ 275 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEE
Confidence 22222 33433455555556675 888887776766666544444433
No 107
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=32.29 E-value=1.8e+02 Score=27.85 Aligned_cols=66 Identities=6% Similarity=-0.010 Sum_probs=41.1
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe-EEEE--ECCeEEEEeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS-VLLY--WNDMLVMVAPQ 66 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~-v~~~--~~~~l~l~g~~ 66 (618)
+++++++++++.-..+|.|++++.+-.+....+.......|..+.|--+.. +++. .+..|.++.+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence 467899888777777899999876544444455544333578888874432 3222 23556666554
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=32.27 E-value=1.1e+02 Score=31.48 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=29.8
Q ss_pred CcccCC---CCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPN---GNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~---g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
|++||+ |++++.-..+|.+.|+...-.+.+..+-.+....+..+.|.
T Consensus 201 ~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 201 VHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp EEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred EEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence 467898 88888877789998877544444433222333345566665
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=32.15 E-value=1e+02 Score=29.68 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CcccCC---CCeeEEEecCCcEEEEeCCC-CCcc-ccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPN---GNFVACFTHDGRLVVNNTNF-SSPV-IDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~---g~~iAl~~~~g~l~v~ssd~-~~~~-~e~~~~~~~~p~~~~WCG~ 49 (618)
|++||+ |+++|.-..+|.+.|.+.+- ...+ ..+. ....+...+.|..+
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 97 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDD 97 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTT
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcC
Confidence 467898 69999988899988876543 3332 2222 22335667777643
No 110
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=32.10 E-value=2.8e+02 Score=24.94 Aligned_cols=116 Identities=9% Similarity=-0.050 Sum_probs=73.2
Q ss_pred HHHHHcCCcchHHhHHhHc-C--c-C-hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHH
Q 007100 478 RTCIVLGNHRAAMKVKTEF-K--V-S-EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKG 547 (618)
Q Consensus 478 ~~li~~~~~k~a~kl~k~f-K--V-s-dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~ 547 (618)
..+...|+.+.|.+.-++. + . | ....|......+...|+|++-..+... ...+..+.-...++...|+.+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 3345667777766654433 3 2 2 345667777888899999887766532 234455666778889999999
Q ss_pred HHHHhhccC----C-C---HHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHccCChHHH
Q 007100 548 EALKYIPKL----V-D---PRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAAS 602 (618)
Q Consensus 548 eA~kyI~ki----~-d---~e~r~~l~~k~~~~~eA~~~a~~~kd~~~L~~i~~~~~~~~~~~ 602 (618)
+|..++.++ + + ......+|.+.|++.+|.+.. ..+....|++..+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~---------~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG---------LQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH---------HHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH---------HHHHHHCCCCHHHH
Confidence 998776653 2 1 234556777888888876543 33444556665333
No 111
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=32.00 E-value=63 Score=31.36 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=40.1
Q ss_pred CcccC-CCCeeEEEecCCcEEEEeCCCCCcccccc--CCCCCCCCceeeeCCCeEE-EE-ECCeEEEEeC
Q 007100 1 MAVSP-NGNFVACFTHDGRLVVNNTNFSSPVIDES--CESALPPEQIAWCGMDSVL-LY-WNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp-~g~~iAl~~~~g~l~v~ssd~~~~~~e~~--~~~~~~p~~~~WCG~d~v~-~~-~~~~l~l~g~ 65 (618)
|+.|| +|++++.-..+|.+.|.+..-.+....+. ......+..+.|..+...+ .. .+..+.+...
T Consensus 121 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 121 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred EEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEEC
Confidence 46789 89999998889999988765555554442 1234466788887443222 22 2344555543
No 112
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=31.99 E-value=1.5e+02 Score=29.22 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCcccccc--CCCCCCCCceeee--CCCeEEEEECCeEEEEeCCCC--------
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES--CESALPPEQIAWC--GMDSVLLYWNDMLVMVAPQAE-------- 68 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~--~~~~~~p~~~~WC--G~d~v~~~~~~~l~l~g~~~~-------- 68 (618)
++.||+|+++|--..+|.+.+...+-........ .........+.|. |+--+....+..+.+......
T Consensus 111 v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 111 VAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Q ss_pred --------ceEeecCCCeEEeecCCc-eEEe
Q 007100 69 --------PVQYFYDEPLVLIPECDG-VRIL 90 (618)
Q Consensus 69 --------~~~~~~~~~~~l~~e~Dg-~rii 90 (618)
.+.|.-++..++..--|| |||.
T Consensus 191 ~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCeEEEe
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=31.95 E-value=1.1e+02 Score=36.22 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=33.8
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
+++||+|+++|.-..+|.+.|.+..-.+.+..+.. .......+.|..++
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDD 669 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCC
Confidence 47899999999988999998887655555544442 23355667776433
No 114
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=31.70 E-value=1.4e+02 Score=23.38 Aligned_cols=44 Identities=9% Similarity=-0.033 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHccCChHHHHHHHHHHHHhhh
Q 007100 561 ERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSF 614 (618)
Q Consensus 561 ~r~~l~~k~~~~~eA~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~l~~ 614 (618)
.....|.+.|++.+|.+...+ .....| +..+...+..+...+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~---------~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNK---------SLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH---------HHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH---------HHHhCC-CHHHHHHHHHHHHHHHH
Confidence 345566777777777754332 222323 44455555555555443
No 115
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=31.51 E-value=1.3e+02 Score=28.20 Aligned_cols=48 Identities=6% Similarity=-0.097 Sum_probs=29.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCC-CC--CccccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTN-FS--SPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd-~~--~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
++.||+|++++.-..+|.+.+.... .. +....+. ....+...+.|.|+
T Consensus 65 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 115 (313)
T 3odt_A 65 VCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSFQDG 115 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEEETT
T ss_pred EEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEecCC
Confidence 4689999999998889988776532 21 2222332 22335567777554
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=31.26 E-value=1.5e+02 Score=26.32 Aligned_cols=78 Identities=12% Similarity=-0.036 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc-----CCCC----------------CCchHHHHHHHhcCCHHHHHHhhccCC----
Q 007100 503 WYWLKVFALATKRDWDALERFSKE-----KRPP----------------IGYRPFVEACVDADEKGEALKYIPKLV---- 557 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f~~s-----KKsp----------------Igyepfv~~~~~~~~~~eA~kyI~ki~---- 557 (618)
.|...-..+...++|++-..+... ...| -.|.-...++...|+.++|..+..++-
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 455555566677777665544421 1222 223334556677788888877666531
Q ss_pred ----CHHHHHHHHHHcCCHHHHHHHHH
Q 007100 558 ----DPRERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 558 ----d~e~r~~l~~k~~~~~eA~~~a~ 580 (618)
-.-.+...|...|++.+|++...
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 12356677888888888876543
No 117
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=31.01 E-value=39 Score=34.52 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=32.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|+++|.-..+|.+.+.+....+.+..+......+...+.||
T Consensus 220 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 220 ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 46899999999988899999987766655555443333344566565
No 118
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=30.83 E-value=1.3e+02 Score=26.72 Aligned_cols=50 Identities=30% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHhccCchhHHHHHHhhhhHHHHH---HHHHH-HccccCCHHHHHHHHHHHh
Q 007100 123 ALDHFDRRSAKADENLRLIRASLPKAV---EACID-AAGHEFDISRQRTLLRAAS 173 (618)
Q Consensus 123 a~~~~~~~~~~a~e~lr~i~~~L~~AV---~~CI~-AA~~e~d~~~Qk~LL~AAs 173 (618)
+.+.+-.....+.|-+|.-+ .|..|- -.||. .|..+-||..|++||.||-
T Consensus 58 ~t~~l~~s~gd~~eMvrqak-~Laqat~~LV~~iK~eAe~~~D~~~q~rLL~AAk 111 (139)
T 1u89_A 58 VTENIFSSMGDAGEMVRQAR-ILAQATSDLVNAIKADAEGESDLENSRKLLSAAK 111 (139)
T ss_dssp HHHHHHHTTTTSHHHHHHHH-HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 33333333333456555553 233222 23444 4667789999999999984
No 119
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=30.76 E-value=53 Score=32.96 Aligned_cols=56 Identities=11% Similarity=0.223 Sum_probs=31.2
Q ss_pred CcccCCCCeeEEEec------CCcEEEEeCCCCC---ccccccCCCCCCCCceeeeCCCeEEEEE
Q 007100 1 MAVSPNGNFVACFTH------DGRLVVNNTNFSS---PVIDESCESALPPEQIAWCGMDSVLLYW 56 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~------~g~l~v~ssd~~~---~~~e~~~~~~~~p~~~~WCG~d~v~~~~ 56 (618)
+++||+|++||--.. +|.+++....-.. .++....+.......+.|..++.++..-
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s 112 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS 112 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE
Confidence 468999999987654 5677776542221 1211111223345677887666555443
No 120
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.56 E-value=81 Score=31.68 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=22.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCcc
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPV 30 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~ 30 (618)
+++||+|+++|--..+|.+.+.+..-.+.+
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 468999999998888999988765444443
No 121
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=30.46 E-value=45 Score=32.69 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=33.1
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
+++||+|++++.-..+|.+.+++..-.+.+..+... ..++..+.|..+
T Consensus 208 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~ 255 (372)
T 1k8k_C 208 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITE 255 (372)
T ss_dssp EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEET
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecC
Confidence 467999999999888999988876555555555433 234566777643
No 122
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=30.22 E-value=1.4e+02 Score=28.80 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=47.2
Q ss_pred cccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC-CeEEEEEC-CeEEEEeCCCCceEeec
Q 007100 2 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM-DSVLLYWN-DMLVMVAPQAEPVQYFY 74 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~-d~v~~~~~-~~l~l~g~~~~~~~~~~ 74 (618)
+++|+|++++....+|.+.+++.+ -+.+.+++... .|.......+ +.++.... +.|+.+.|..-.+.|.+
T Consensus 131 ~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 131 NKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred eECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 467889888877778888888887 66777777642 5555555533 44444454 46888888844566665
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=30.17 E-value=1.3e+02 Score=29.64 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=39.0
Q ss_pred CcccCCCCeeEEEe-cCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCe-EEEEE--CCeEEEEeCC
Q 007100 1 MAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS-VLLYW--NDMLVMVAPQ 66 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~-~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~-v~~~~--~~~l~l~g~~ 66 (618)
+++||+|+++++-. .+|.+.+++..-.+....+.... .|..+.|..+.. +++.- ...|.++...
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 47899999886544 57899988765444554554443 677888874433 22221 2455555544
No 124
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=30.12 E-value=2.6e+02 Score=23.89 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCccchhhhhhc--CchHHHHHHHHHcCChhHHHHHH
Q 007100 267 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSI--GEEDTALVKATESGDTDLVYLVI 344 (618)
Q Consensus 267 ~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~--~~~~~AL~kAi~S~D~dLI~~vL 344 (618)
++|.+.|.+|....|.-||+ ..-+..|-..++.++-+ +-+.+.+-- ++.+....+ -.||+|.+|
T Consensus 7 ~~L~~~I~~Rk~~~pe~SYT---~~L~~kG~~kI~kKvgE------EA~E~iiAak~~d~~el~~E-----~ADLlYHll 72 (116)
T 2a7w_A 7 KNIADTLEARREAAPQSSYV---ASLFHKGEDAILKKVAE------EAAETLMASKDKDKLHLVRE-----VADLWFHTM 72 (116)
T ss_dssp HHHHHHHHHGGGSCTTTCHH---HHHHHHCHHHHHHHHHH------HHHHHHHHHHTTCHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcHH---HHHHHCCHHHHHHHHHH------HHHHHHHHHHhCCHHHHHHH-----HHHHHHHHH
Confidence 68899999998888899995 56677888999988776 333333321 122222222 257888887
Q ss_pred HHHHh-hCChhHHHHHHhcC
Q 007100 345 FHIWQ-KRPALEFFGMIQTR 363 (618)
Q Consensus 345 l~l~~-~l~~~~f~~~l~~~ 363 (618)
+-|.. .+++.+..+.|.++
T Consensus 73 VlL~~~gv~l~dV~~eL~~R 92 (116)
T 2a7w_A 73 VLLTYHGLRPEDVVMELHRR 92 (116)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 76554 57777777766553
No 125
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=29.91 E-value=37 Score=33.34 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=28.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCC--CCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNF--SSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~--~~~~~e~~~~~~~~p~~~~WC 47 (618)
|++||+|+++|.-..+|.+.|.+.+- .+....+. ....+...+.|.
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~ 64 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWA 64 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeC
Confidence 47899999999988899888776431 12222222 223345567775
No 126
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=29.86 E-value=2.1e+02 Score=29.95 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=28.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG 48 (618)
+++||+|+++|.-..+|.+.+.+.+.. .+..+. ....++..+.|.-
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~~~~-~~~~~~-~~~~~v~~~~~sp 477 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNRNGQ-LLQTLT-GHSSSVRGVAFSP 477 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSC-EEEEEE-CCSSCEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCC-EEEEEc-CCCCCEEEEEEcC
Confidence 468999999999888999988764432 222222 2223445566653
No 127
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=29.85 E-value=99 Score=29.34 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=22.0
Q ss_pred CcccCC--CCeeEEEecCCcEEEEeCCCCCc
Q 007100 1 MAVSPN--GNFVACFTHDGRLVVNNTNFSSP 29 (618)
Q Consensus 1 ~~~Sp~--g~~iAl~~~~g~l~v~ssd~~~~ 29 (618)
|+.+|+ |++++.-..+|.+.+....-.+.
T Consensus 116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp EEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred EEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 467888 99999988899998887543333
No 128
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=29.83 E-value=1.9e+02 Score=27.04 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=31.5
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
++.||+|+ ++.-..+|.+.+++..-.+.+..+... ..+...+.|..+.
T Consensus 190 ~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~ 237 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG 237 (313)
T ss_dssp EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS
T ss_pred EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC-CceEEEEEEecCC
Confidence 46789987 666677899998877655555555432 2355667776543
No 129
>3fqm_A NS5A, non-structural protein 5A; HCV, domain I, phosphoprotein, RNA-binding, metal BIND protein; 1.90A {Hepatitis c virus} PDB: 3fqq_A* 1zh1_A
Probab=29.76 E-value=29 Score=31.53 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=53.1
Q ss_pred CCCCeeEEEecCCcEEEEeCCCCCccc----ccc---CCCC--CC-C--Cceeee-C-CC-eEEEEECCeEEEEeCCCCc
Q 007100 5 PNGNFVACFTHDGRLVVNNTNFSSPVI----DES---CESA--LP-P--EQIAWC-G-MD-SVLLYWNDMLVMVAPQAEP 69 (618)
Q Consensus 5 p~g~~iAl~~~~g~l~v~ssd~~~~~~----e~~---~~~~--~~-p--~~~~WC-G-~d-~v~~~~~~~l~l~g~~~~~ 69 (618)
|.|..|+---.+|.+.|+++..=+.+. -++ ++.. .+ | ..-.|- | +| .=+....|..++.|...+.
T Consensus 28 pCGa~ItGhVkNG~mri~gpktCsN~w~GTfPINa~ttGp~~P~P~pny~~alwrV~a~eyvEv~r~gd~~yvtg~t~dn 107 (177)
T 3fqm_A 28 PCGAQITGHVKNGSMRIVGPRTCSNTWHGTFPINAYTTGPCTPSPAPNYSRALWRVAAEEYVEVTRVGDFHYVTGMTTDN 107 (177)
T ss_dssp TTSCEEEEEEETTEEEEECCTTCHHHHHTCBCCSTTCBSSCEEECCSCCSEEEEEEETTEEEEEEEETTEEEEEEESSTT
T ss_pred CCCcEEEEEEeCCEEEEecchhhhccccccEeeccccCCCCcccCCCCCceeEEEeecceEEEEEEecceEEEeeccCCC
Confidence 678777777779999988775544332 222 1111 01 1 113332 1 11 1134457889999999998
Q ss_pred eEeecC-CCeEEeecCCceEEe
Q 007100 70 VQYFYD-EPLVLIPECDGVRIL 90 (618)
Q Consensus 70 ~~~~~~-~~~~l~~e~Dg~rii 90 (618)
++.+-. ..+-+++|+|||||-
T Consensus 108 lkcpcqvp~pefft~vdgvrlh 129 (177)
T 3fqm_A 108 VKCPCQVPAPEFFTEVDGVRLH 129 (177)
T ss_dssp EECCSSCCCGGGCSEETTEECC
T ss_pred ccccccCCChhHccccceeEEe
Confidence 887755 336789999999983
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=29.59 E-value=1.1e+02 Score=25.28 Aligned_cols=61 Identities=13% Similarity=-0.062 Sum_probs=34.2
Q ss_pred HHHHHhcCCHHHHHHhhccC----C----CHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHccCChHHHHHHH
Q 007100 537 VEACVDADEKGEALKYIPKL----V----DPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFD 606 (618)
Q Consensus 537 v~~~~~~~~~~eA~kyI~ki----~----d~e~r~~l~~k~~~~~eA~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~ 606 (618)
..++.+.|+.++|..+..++ + -.-.+-..|...|++.+|++...+ ....-|++..+...+.
T Consensus 54 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~---------al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 54 AACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED---------ALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHHHH
T ss_pred hhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHCcCCHHHHHHHH
Confidence 34444455555554443332 1 133567788899999998865433 3334477765554443
No 131
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=29.57 E-value=46 Score=32.25 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=41.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCC---------CCccccccCCCCCCCCceeeeCCCeEEEEECCeEEEEeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNF---------SSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA 67 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~---------~~~~~e~~~~~~~~p~~~~WCG~d~v~~~~~~~l~l~g~~~ 67 (618)
+++|| ++.++.-..+|.+.+.+..- .+.+..+. ....+..+.|.++..++...+..+.+.....
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 35788 88888888899998876432 33333443 3446788999887744444445777766544
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=29.22 E-value=1.5e+02 Score=25.35 Aligned_cols=102 Identities=10% Similarity=0.057 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHcC
Q 007100 504 YWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYARIG 570 (618)
Q Consensus 504 ~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k~~ 570 (618)
|+-.-..+...|+|++-...... ...|-.|.-...++...|+.++|..+..+. | + .-.....|...|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 34444555566666555444321 122333333445556666666666555442 1 1 234566788888
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHccCC---hHHHHHHHHHHHHhhh
Q 007100 571 MAKEAADAASQAKDGELLGRLKLTFAQN---AAASSIFDTLRDRLSF 614 (618)
Q Consensus 571 ~~~eA~~~a~~~kd~~~L~~i~~~~~~~---~~~~~~i~~~~~~l~~ 614 (618)
++.+|++...+ .....|++ ..+...+..++.++..
T Consensus 104 ~~~~A~~~~~~---------al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 104 ELAEAESGLFL---------AQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp CHHHHHHHHHH---------HHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHH---------HHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 88888765433 22233332 2345556666655543
No 133
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=29.12 E-value=61 Score=32.45 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=32.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG 48 (618)
|++||+|++++--..+|.+.|....-.+.+..+... ......+.|+.
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~ 191 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSEVNCVAACP 191 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEcc
Confidence 468999999998888999988865545555555432 23455677763
No 134
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=28.92 E-value=1.1e+02 Score=29.48 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=26.3
Q ss_pred cccC-CCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 2 AVSP-NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 2 ~~Sp-~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
++|| +|++++.- ++.+++++..-.+....+... ..|..+.|..+
T Consensus 261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~d 305 (349)
T 1jmx_B 261 LRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKK 305 (349)
T ss_dssp EECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECSS
T ss_pred EecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCccceEECCC
Confidence 5688 88887765 778888765433333333332 24666666543
No 135
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=28.70 E-value=81 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=25.9
Q ss_pred CcccCCCCeeEEEec---------------CCcEEEEeCCCCCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTH---------------DGRLVVNNTNFSSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~---------------~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG 48 (618)
+++||+|++++.-.. +|.+++++..-.+....+... ..|..+.|.-
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~ 410 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPTGLDVSP 410 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEEEEEECT
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCceEEEcC
Confidence 467899988777654 357777765433333333322 2445555543
No 136
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=28.69 E-value=1.2e+02 Score=30.10 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=31.9
Q ss_pred CcccCCCCeeEEEec-CCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTH-DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~-~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
+++||+|++|++-.. +|.+++++..-.+....+... ..|..+.|..+.
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg 127 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDG 127 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCC
Confidence 468999999877664 589999876544444444333 256778887443
No 137
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=28.65 E-value=1.4e+02 Score=28.45 Aligned_cols=6 Identities=0% Similarity=0.440 Sum_probs=2.5
Q ss_pred CCceee
Q 007100 41 PEQIAW 46 (618)
Q Consensus 41 p~~~~W 46 (618)
|..+.|
T Consensus 258 ~~~~~f 263 (296)
T 3e5z_A 258 TSNLCF 263 (296)
T ss_dssp CCEEEE
T ss_pred ceeEEE
Confidence 344444
No 138
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=28.64 E-value=2.7e+02 Score=23.70 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCccchhhhhhc--CchHHHHHHHHHcCChhHHHHHH
Q 007100 267 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSI--GEEDTALVKATESGDTDLVYLVI 344 (618)
Q Consensus 267 ~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~--~~~~~AL~kAi~S~D~dLI~~vL 344 (618)
++|.+.|.+|....|.-||+ ..-+..|-..++.++-+ +-+...+-- ++.+....+ -.||+|.+|
T Consensus 6 ~~L~~~I~~Rk~~~pe~SYT---~~L~~kG~~kI~kKvgE------EA~E~iiAak~~d~~~l~~E-----~ADLlYHll 71 (115)
T 1yvw_A 6 KLLYKTIEERKGSPLPESYT---NYLFSKGEDKILKKIGE------ECAEVIIACKNNDKEEVVKE-----MVDVFYHCF 71 (115)
T ss_dssp HHHHHHHHHHHHSCCTTSHH---HHHHHHCHHHHHHHHHH------HHHHHHHHHHTTCHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcHH---HHHHHCcHHHHHHHHHH------HHHHHHHHHhcCCHHHHHHH-----HHHHHHHHH
Confidence 67899999998888889995 56677898999988776 333333311 122222222 257888887
Q ss_pred HHHHh-hCChhHHHHHHhcC
Q 007100 345 FHIWQ-KRPALEFFGMIQTR 363 (618)
Q Consensus 345 l~l~~-~l~~~~f~~~l~~~ 363 (618)
+-|.. .+++.+..+.|.++
T Consensus 72 VlL~~~gv~l~dV~~eL~~R 91 (115)
T 1yvw_A 72 VLLAEKNIALEDVMREVKER 91 (115)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 76554 57777777766553
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=28.50 E-value=82 Score=27.07 Aligned_cols=79 Identities=11% Similarity=-0.043 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C----CHHHHHHHHHH
Q 007100 502 RWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V----DPRERAEAYAR 568 (618)
Q Consensus 502 r~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~----d~e~r~~l~~k 568 (618)
..|+..-..+...++|++-..+... ...+..|--...++...|+.++|..+..+. + -.-.+...|.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455555666667776665544421 233444444556667777777776665543 1 13356677888
Q ss_pred cCCHHHHHHHHH
Q 007100 569 IGMAKEAADAAS 580 (618)
Q Consensus 569 ~~~~~eA~~~a~ 580 (618)
.|++.+|++...
T Consensus 92 ~g~~~~A~~~~~ 103 (164)
T 3sz7_A 92 MADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 888888876544
No 140
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=28.33 E-value=2.5e+02 Score=29.23 Aligned_cols=167 Identities=10% Similarity=0.091 Sum_probs=88.7
Q ss_pred chhHHHHHH--hhhhHHHHHHHHHHHccccCCHHHHHHHHHHHhhhhhhc-c------------------------CCCh
Q 007100 132 AKADENLRL--IRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFC-S------------------------NFQR 184 (618)
Q Consensus 132 ~~a~e~lr~--i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAsfGk~~~-~------------------------~~~~ 184 (618)
+.+++.|+. +..+++.||+-|++.=. +-..|+=|..=|...+ . .-|.
T Consensus 144 ~~~d~~I~~aLl~Gd~e~AV~~cl~~~r------~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~ 217 (399)
T 2pm7_A 144 GNIEQTISKNLVSGNIKSAVKNSLENDL------MMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREV 217 (399)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHTTTC------HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHCCC------hHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCH
Confidence 445555544 35699999999996411 2222333322222222 1 1233
Q ss_pred hHHHHHhhhhhHHhccCCCCCcccccHH-----HHhcCChHHHHHHHHhcCChHHHHHHHHHhCCChhHHHHHHHHH---
Q 007100 185 DRIQEMCKTLRVLNAARDPEIGIPLSIQ-----QYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACS--- 256 (618)
Q Consensus 185 ~~fv~~c~~LRVLn~lr~~~igi~lT~~-----q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~~~I~~~WA~~--- 256 (618)
..+|..|. |..+|. -+++-+||. +|..| -+.|=+||...|.. .+-.+|-...-+.+++..-|...
T Consensus 218 ~d~V~~~~----l~~WkE-~La~i~t~a~~e~~ef~~L-c~~LG~RL~~~g~~-~~A~lCYi~Ag~~dk~v~iW~~~~~~ 290 (399)
T 2pm7_A 218 DDLVENLD----VSQWKF-ISKAIQNLYPNDIAQRNEM-MIKLGDRMKENGHR-QDSLTLYLAAGSLDKVASIWLSEFPD 290 (399)
T ss_dssp HHHHHHBC----GGGHHH-HHHHHHHHCTTCHHHHHHH-HHHHHHHHHTTTCH-HHHHHHHHHHTCHHHHHHHHHHSHHH
T ss_pred HHHHhcCC----hhhHHH-HHHHHHhcCCccHhHHHHH-HHHHHHHHHhCCCh-hhhhHHHHhhCCHHHHHHHHHHhcch
Confidence 44455442 333333 134455554 33322 25677889888766 77779999999999999999742
Q ss_pred ---HhhhcCCCC----hHHHHHHHHHhhc---cC----CCCC-------HHHHHHHHHHhCcHHHHHHHHhcCCCCc
Q 007100 257 ---KITASLAIP----DVTLLEILLDKLK---LC----KGIS-------YAAVAAHADKSGRRKLAAMLVEHEPRSS 312 (618)
Q Consensus 257 ---kI~~~~~~~----D~~l~~~I~~kl~---~~----~~is-------~~~IA~~A~~~gR~~LA~~Ll~~E~~~~ 312 (618)
++.. ...+ .-..+...++|.. .. .++. |.+=|......|+...|.++|+.=|...
T Consensus 291 ~~~~~~~-~~~s~~~~~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~lp~~~ 366 (399)
T 2pm7_A 291 LEDKLKK-DNKTIYEAHSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNSLPSDN 366 (399)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHSCTTC
T ss_pred hhhcccc-ccCCcccccHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 1100 0000 1112333333321 11 1111 3344556667799999999988766544
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=28.28 E-value=1.3e+02 Score=32.87 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.4
Q ss_pred cccCCCCeeEEEe
Q 007100 2 AVSPNGNFVACFT 14 (618)
Q Consensus 2 ~~Sp~g~~iAl~~ 14 (618)
+.||+|++||...
T Consensus 187 ~~SpDg~~la~~~ 199 (706)
T 2z3z_A 187 FWSPKGSCLAFYR 199 (706)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 5799999999876
No 142
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=27.90 E-value=42 Score=39.76 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHcCCcchHHhHHhHc-------CcChHHHHHHHHHHHHhcCChhHHHHhhcc------CCCCCCchHHH
Q 007100 471 SSISDTIRTCIVLGNHRAAMKVKTEF-------KVSEKRWYWLKVFALATKRDWDALERFSKE------KRPPIGYRPFV 537 (618)
Q Consensus 471 ~Sl~~Ti~~li~~~~~k~a~kl~k~f-------KVsdkr~~~lkl~aLa~~~~wdeLe~f~~s------KKspIgyepfv 537 (618)
.+++..|.-|++.|+.+.|.++-.++ -.|+-.-|-+-|.+||+.|++++-.++..+ +-..+-|-..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45677788888888888888776443 256778888889999999988888777643 12345666677
Q ss_pred HHHHhcCCH-HHHHHhhccC
Q 007100 538 EACVDADEK-GEALKYIPKL 556 (618)
Q Consensus 538 ~~~~~~~~~-~eA~kyI~ki 556 (618)
+.+-+.|.. ++|.+++..|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 777777764 5665665544
No 143
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=27.90 E-value=68 Score=29.05 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=68.5
Q ss_pred HHHHcCCcchHHhHHhH-cCc--ChHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHH
Q 007100 479 TCIVLGNHRAAMKVKTE-FKV--SEKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEAL 550 (618)
Q Consensus 479 ~li~~~~~k~a~kl~k~-fKV--sdkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~ 550 (618)
.+...|+.+.|.+.-++ .+. .....|......+...++|++-..+... ...+-.+.-...++...|+.++|.
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 34566777666554322 222 3456677778888999999887766632 233444455677788999999998
Q ss_pred HhhccC----C-CH---HHHHHHHHHcCCHHHHHHHHHh
Q 007100 551 KYIPKL----V-DP---RERAEAYARIGMAKEAADAASQ 581 (618)
Q Consensus 551 kyI~ki----~-d~---e~r~~l~~k~~~~~eA~~~a~~ 581 (618)
.+..++ + +. ......|.+.|++.+|++...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 146 PYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877764 2 22 2456778889999999877544
No 144
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=27.73 E-value=1.7e+02 Score=28.87 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNT 24 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ss 24 (618)
|++||+|++||--..+|.+.|...
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~ 93 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDS 93 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCeEEEEEC
Confidence 468999999998888999988764
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=27.66 E-value=1.7e+02 Score=32.10 Aligned_cols=62 Identities=11% Similarity=0.227 Sum_probs=35.6
Q ss_pred cccCCCCeeEEEec---------CCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC-eEEEEECCeEEEEeC
Q 007100 2 AVSPNGNFVACFTH---------DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD-SVLLYWNDMLVMVAP 65 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~---------~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d-~v~~~~~~~l~l~g~ 65 (618)
++||+|++||+-.. ++.+++.+.+=.+.+...... .....+.|.-+. .++...++.|++...
T Consensus 66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--~~~~~~~~SPDG~~la~~~~~~i~~~~~ 137 (719)
T 1z68_A 66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--RPIQYLCWSPVGSKLAYVYQNNIYLKQR 137 (719)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--SSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred EECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC--cccccceECCCCCEEEEEECCeEEEEeC
Confidence 68999999998776 578888865433321001111 234567776433 344444566665543
No 146
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=27.65 E-value=2.1e+02 Score=28.45 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=32.0
Q ss_pred CcccCCC-CeeEEEecCCcEEEEeCCCCCcccccc-CCCCCCCCceeeeC
Q 007100 1 MAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDES-CESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g-~~iAl~~~~g~l~v~ssd~~~~~~e~~-~~~~~~p~~~~WCG 48 (618)
|+.||+| ++++.-..+|.+.|....-.+....+. .........+.|..
T Consensus 137 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186 (402)
T ss_dssp EEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT
T ss_pred EEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC
Confidence 4678998 578777788999888765445554552 22334567888863
No 147
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=27.61 E-value=1.5e+02 Score=30.04 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=30.8
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG 48 (618)
++.||+|+++|.-+.+|.+.|....-.+.+..+... ......+.|.|
T Consensus 153 v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h-~~~v~~~s~~~ 199 (420)
T 4gga_A 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNS 199 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEET
T ss_pred EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC-CCceEEEeeCC
Confidence 468999999999888999988876544544444322 22334455543
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=27.57 E-value=1.1e+02 Score=24.34 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 007100 561 ERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 561 ~r~~l~~k~~~~~eA~~~a~ 580 (618)
.....|.+.|++.+|++...
T Consensus 89 ~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 45566778888888876544
No 149
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=27.56 E-value=1.8e+02 Score=29.52 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=50.3
Q ss_pred ccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEEEEECCeEEEEeCCC--------------C
Q 007100 3 VSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA--------------E 68 (618)
Q Consensus 3 ~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~~~~~~~l~l~g~~~--------------~ 68 (618)
++++|++++.-..+|.+.+.+..-.+.+..+... ...+..+.|.|+-.++...+..+.+..... .
T Consensus 285 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 363 (445)
T 2ovr_B 285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 363 (445)
T ss_dssp EEECSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred EEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC
Confidence 4557777777777888877765444444444322 223445666554222222233333333211 1
Q ss_pred ce-EeecCCCeEEeecCCc-eEEeccCcchhhhcc
Q 007100 69 PV-QYFYDEPLVLIPECDG-VRILSNSSMEFLQRV 101 (618)
Q Consensus 69 ~~-~~~~~~~~~l~~e~Dg-~riit~~~~~~l~~V 101 (618)
.+ ...+++..++..--|| |+|.....-+.++.+
T Consensus 364 ~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 364 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCEEEEEeCCCeEEEEECCCCceeeee
Confidence 11 2233445555555565 888876666666655
No 150
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=27.54 E-value=2.3e+02 Score=28.64 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=39.8
Q ss_pred CcccCCCCeeEEEec----------CCcEEEEeCCCCCccccccCC-C-----CCCCCceeee--CCCeEEEEE--CCeE
Q 007100 1 MAVSPNGNFVACFTH----------DGRLVVNNTNFSSPVIDESCE-S-----ALPPEQIAWC--GMDSVLLYW--NDML 60 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~----------~g~l~v~ssd~~~~~~e~~~~-~-----~~~p~~~~WC--G~d~v~~~~--~~~l 60 (618)
|++||+|+++..-+. ++.+.++..+--+...++.+. . ...|..+.|- |.-..+... .+.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 579999999988762 456778766433333344332 0 1247778885 443344443 2557
Q ss_pred EEEeCCCCce
Q 007100 61 VMVAPQAEPV 70 (618)
Q Consensus 61 ~l~g~~~~~~ 70 (618)
.++- ....+
T Consensus 151 ~viD-~t~~~ 159 (373)
T 2mad_H 151 GLVV-QGGSS 159 (373)
T ss_pred EEEE-CCCCE
Confidence 6666 44333
No 151
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=27.15 E-value=1.6e+02 Score=25.35 Aligned_cols=78 Identities=15% Similarity=-0.000 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHc
Q 007100 503 WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYARI 569 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k~ 569 (618)
.|...-..+...++|++-...... ...+-.+.-...+..+.|+.++|..+..++ | + .......|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 344444445555555544443321 112222223344555666666666554442 1 1 23556677788
Q ss_pred CCHHHHHHHHH
Q 007100 570 GMAKEAADAAS 580 (618)
Q Consensus 570 ~~~~eA~~~a~ 580 (618)
|++.+|++...
T Consensus 155 g~~~~A~~~~~ 165 (184)
T 3vtx_A 155 GLRDEAVKYFK 165 (184)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888876643
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=27.03 E-value=2.4e+02 Score=27.68 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=35.8
Q ss_pred cccCCCCeeEEEec-CC--cEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEEEEE--CCeEEEEeCCC
Q 007100 2 AVSPNGNFVACFTH-DG--RLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYW--NDMLVMVAPQA 67 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~-~g--~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~~~~--~~~l~l~g~~~ 67 (618)
++||+|+.||+... +| .||++..+-.+.....+ ..........|.-+..-+++. +..++++...+
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 58999999999887 56 48887654333221111 111112256788555433332 23566666544
No 153
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=27.01 E-value=1.9e+02 Score=28.39 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=34.4
Q ss_pred CcccCCC-CeeEEEecCCcEEEEeCCCCCccccccC-CCCCCCCceeeeC
Q 007100 1 MAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESC-ESALPPEQIAWCG 48 (618)
Q Consensus 1 ~~~Sp~g-~~iAl~~~~g~l~v~ssd~~~~~~e~~~-~~~~~p~~~~WCG 48 (618)
++.||+| +++|.-..+|.+.|.+.+-.+....+.. +.......+.|+.
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQ 128 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEET
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCC
Confidence 4679999 8999988899999887654454444442 3444667888875
No 154
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=26.96 E-value=1.1e+02 Score=31.29 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=29.5
Q ss_pred CcccCCCCeeEEEe-cCCcEEEEeC--CCCCc---cccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFT-HDGRLVVNNT--NFSSP---VIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~-~~g~l~v~ss--d~~~~---~~e~~~~~~~~p~~~~WCG~ 49 (618)
|+.+|+|++++.-. .+|.+.|+.. .-... +..+... ..+..+.|.++
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~ 365 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHND 365 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETT
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCC
Confidence 35788999999888 6888888765 22211 2222222 46677777763
No 155
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=26.90 E-value=50 Score=32.70 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.1
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTN 25 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd 25 (618)
+++||+|+++|.-..+|.+.+.+..
T Consensus 211 ~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 211 VGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp EEECTTSSCEEEEETTTEEC-CEEC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECC
Confidence 4679999999988888988776543
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.50 E-value=1.5e+02 Score=24.08 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=33.6
Q ss_pred HHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHccCChHHHHHHHH
Q 007100 537 VEACVDADEKGEALKYIPKL----V-D---PRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDT 607 (618)
Q Consensus 537 v~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k~~~~~eA~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~ 607 (618)
..++...|+.++|..+..+. + + .-....+|...|++.+|++.. ......-|++..+...+..
T Consensus 72 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~---------~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 72 AACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL---------QRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHH---------HHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHcCCCcHHHHHHHHH
Confidence 34445555555555444332 1 1 235566778888888887554 3334445666645444444
No 157
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=26.45 E-value=80 Score=30.59 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=22.2
Q ss_pred CcccCC--CCeeEEEecCCcEEEEeCCCCC
Q 007100 1 MAVSPN--GNFVACFTHDGRLVVNNTNFSS 28 (618)
Q Consensus 1 ~~~Sp~--g~~iAl~~~~g~l~v~ssd~~~ 28 (618)
|++||+ |+++|.-..+|.+.|++.+-.+
T Consensus 291 ~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 291 MRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp CCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 467888 9999998889999888755443
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=26.19 E-value=1.1e+02 Score=24.88 Aligned_cols=79 Identities=9% Similarity=-0.079 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C----CHHHHHHHHHHc
Q 007100 503 WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V----DPRERAEAYARI 569 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~----d~e~r~~l~~k~ 569 (618)
.|+..-..+...++|++-...... ...+-.|--...++...|+.++|..+..++ + -.-.....|...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 344444555555565554444321 122222333444555566666665554432 1 123566677788
Q ss_pred CCHHHHHHHHHh
Q 007100 570 GMAKEAADAASQ 581 (618)
Q Consensus 570 ~~~~eA~~~a~~ 581 (618)
|++.+|++...+
T Consensus 91 ~~~~~A~~~~~~ 102 (137)
T 3q49_B 91 ESYDEAIANLQR 102 (137)
T ss_dssp TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 888888766543
No 159
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=26.15 E-value=99 Score=26.46 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=45.5
Q ss_pred HHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcCCHHHH
Q 007100 509 FALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARIGMAKEA 575 (618)
Q Consensus 509 ~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d~---e~r~~l~~k~~~~~eA 575 (618)
+.+.+.|+|++-..+.+. .+.|-.|.-...+....|+.++|..+..++ | ++ -....+|.+.|.+.+|
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence 344455555444333321 223333444445555566666665444432 1 22 2344556677777666
Q ss_pred HHHHHhcCCHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007100 576 ADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDR 611 (618)
Q Consensus 576 ~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~ 611 (618)
++.. ++.....-|++..+.....+++.+
T Consensus 119 a~~~--------~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 119 AKYW--------VERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHH--------HHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHH--------HHHHHHhCcCCHHHHHHHHHHHHH
Confidence 6543 222333447776555555555443
No 160
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=26.06 E-value=2.7e+02 Score=30.42 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=22.0
Q ss_pred CcccCCCCeeEEEec-CC-----cEEEEeCCCCC
Q 007100 1 MAVSPNGNFVACFTH-DG-----RLVVNNTNFSS 28 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~-~g-----~l~v~ssd~~~ 28 (618)
+++||+|++||.... +| .||+.+.+-.+
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~ 75 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ 75 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCc
Confidence 368999999999887 77 89988754443
No 161
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=26.02 E-value=69 Score=25.31 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHcC
Q 007100 504 YWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYARIG 570 (618)
Q Consensus 504 ~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d---~e~r~~l~~k~~ 570 (618)
|......+...++|++-..+... ...+..+--....+...|+.++|..+..++ + + .-....++.+.|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 44455566677777765554421 223334444567778889999998777654 1 1 224566788889
Q ss_pred CHHHHHHHHHh
Q 007100 571 MAKEAADAASQ 581 (618)
Q Consensus 571 ~~~eA~~~a~~ 581 (618)
++.+|.+...+
T Consensus 84 ~~~~A~~~~~~ 94 (136)
T 2fo7_A 84 DYDEAIEYYQK 94 (136)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99998876543
No 162
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=26.02 E-value=2.4e+02 Score=29.55 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=29.7
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
|++||+|++||--..+|.+.|.+.+- +.+..+. ....+...+.|..+
T Consensus 63 l~fspdg~~las~~~d~~i~vWd~~~-~~~~~~~-~~~~~v~~~~~s~d 109 (577)
T 2ymu_A 63 VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT-GHSSSVRGVAFSPD 109 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCC-CEEEEEE-CCCCCEEEEEECCC
Confidence 47899999999888899988876432 2222332 22334556666543
No 163
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=25.59 E-value=69 Score=32.86 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=27.0
Q ss_pred cccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 2 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
++||+|++++.-. +|.+.|.+..-.+.+.++-.....+...+.|.|+
T Consensus 398 ~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp EEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT
T ss_pred EEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCC
Confidence 5678888877755 7777777654444443332333334455555543
No 164
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=25.52 E-value=1.6e+02 Score=29.52 Aligned_cols=48 Identities=10% Similarity=-0.039 Sum_probs=30.4
Q ss_pred CcccCCCCeeEEE-ecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACF-THDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~-~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
+++||+|+.+.+- ..+|.+.++..+-.+....+.. ...|..+.|..+.
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg 356 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDG 356 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTS
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCC
Confidence 4678999876655 4578888887654433333332 2357788887544
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=25.35 E-value=3.8e+02 Score=25.93 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=34.1
Q ss_pred CcccCCCCeeEEEecC------------------------CcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEEEEE
Q 007100 1 MAVSPNGNFVACFTHD------------------------GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYW 56 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~------------------------g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~~~~ 56 (618)
|+++|+|+.++.-..+ |.++++..+-.+.+..+.......|..+.+..+..+.+.=
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 4678888776554433 2466665443333333322223356667665433333321
Q ss_pred --CCeEEEEeCCCC
Q 007100 57 --NDMLVMVAPQAE 68 (618)
Q Consensus 57 --~~~l~l~g~~~~ 68 (618)
++.|..+.+.+.
T Consensus 109 ~~~~~v~~~~~~g~ 122 (329)
T 3fvz_A 109 VALHQVFKLDPHSK 122 (329)
T ss_dssp TTTTEEEEECTTCS
T ss_pred CCCCEEEEEeCCCC
Confidence 355666665543
No 166
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=24.91 E-value=2e+02 Score=31.41 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=38.6
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEE-EEECCeEEEEeC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVL-LYWNDMLVMVAP 65 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~-~~~~~~l~l~g~ 65 (618)
+++||+|+++|.-..+|.+.+.+..-.+.+..+..+ .....+.|..+..++ ....+.+.+...
T Consensus 567 v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~~~i~iwd~ 630 (694)
T 3dm0_A 567 VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAATEHGIKIWDL 630 (694)
T ss_dssp EEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEEEEcCCCEEEEEC
Confidence 468999999998888999988875444444444332 245667776544332 333444544443
No 167
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=24.76 E-value=2e+02 Score=28.40 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=25.3
Q ss_pred cCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 4 SPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 4 Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++|++++.-..+|.+.+.+..-.+....+... ......+.|.
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~ 249 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYY 249 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEe
Confidence 346778888778898888775544444444322 2234455554
No 168
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=24.63 E-value=2.5e+02 Score=24.33 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=31.9
Q ss_pred ccCCH-HHHHHHHHHHhhhhhhccCCChhHHHHHhhhhhHHh
Q 007100 158 HEFDI-SRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLN 198 (618)
Q Consensus 158 ~e~d~-~~Qk~LL~AAsfGk~~~~~~~~~~fv~~c~~LRVLn 198 (618)
.-|+. ........=++||+.--...+...|++.|+.-.|++
T Consensus 17 ~~~~~~~L~~~F~~Fa~fG~~~~~~M~~k~f~K~~kD~~lid 58 (125)
T 1pul_A 17 FNWDDADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLD 58 (125)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHCCCCC
Confidence 33554 455678888899997777889999999999988873
No 169
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=24.15 E-value=1.7e+02 Score=29.57 Aligned_cols=46 Identities=7% Similarity=0.014 Sum_probs=28.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|+++|.-..+|.+.|.+..-.+.+..+... ......+.|.
T Consensus 156 v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~V~~v~~~ 201 (410)
T 1vyh_C 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH-DHNVSSVSIM 201 (410)
T ss_dssp EEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC-SSCEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCEEEEEEe
Confidence 467899999998888898888765433343333322 2244556665
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=24.14 E-value=2.2e+02 Score=27.93 Aligned_cols=30 Identities=13% Similarity=0.342 Sum_probs=20.7
Q ss_pred CCCceeeeCCCeEEEEE--CCeEEEEeCCCCc
Q 007100 40 PPEQIAWCGMDSVLLYW--NDMLVMVAPQAEP 69 (618)
Q Consensus 40 ~p~~~~WCG~d~v~~~~--~~~l~l~g~~~~~ 69 (618)
.|..|.+.|+...|..| .+.|.++.+....
T Consensus 132 ~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 132 STEQMVQYGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp BCCCEEEETTEEEEEECTTCCEEEEEETTTTE
T ss_pred CcceEEEECCEEEEEcCCCCCEEEEEECCCCe
Confidence 68888887666666665 5678887766443
No 171
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=23.98 E-value=2.2e+02 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.3
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNF 26 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~ 26 (618)
+++||+|+.||. ..++.|++...+-
T Consensus 126 ~~~SpdG~~la~-~~~~~i~v~~~~~ 150 (706)
T 2z3z_A 126 LDFSPVGDRVAY-VRNHNLYIARGGK 150 (706)
T ss_dssp CEECTTSSEEEE-EETTEEEEEECBC
T ss_pred CcCCCCCCEEEE-EECCeEEEEecCc
Confidence 468999999998 5689999987543
No 172
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=23.92 E-value=3.6e+02 Score=29.66 Aligned_cols=70 Identities=7% Similarity=-0.066 Sum_probs=44.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCcc---ccccCCCCCCCCceeeeCCCeEEEEECCeEEEEeCCCCce-Eee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPV---IDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPV-QYF 73 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~---~e~~~~~~~~p~~~~WCG~d~v~~~~~~~l~l~g~~~~~~-~~~ 73 (618)
++.||+| +|....++.+.+...+=.... ..+..........+.|-| ..++.....+|.+....+... .+.
T Consensus 188 VawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg-~~LASa~~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 188 IVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVD-YKVVLTCPGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp EEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEET-TEEEEECSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEEC-CEEEEEeCCeEEEEECCCCeEEEEE
Confidence 4689999 555567888877764333321 122113335678999985 677777778888888776555 444
No 173
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=23.79 E-value=71 Score=30.70 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=31.1
Q ss_pred CcccCCCCeeEEEecC-CcEEEEeCCCC--C--ccccccCCCCCCCCceeeeCCCe
Q 007100 1 MAVSPNGNFVACFTHD-GRLVVNNTNFS--S--PVIDESCESALPPEQIAWCGMDS 51 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~-g~l~v~ssd~~--~--~~~e~~~~~~~~p~~~~WCG~d~ 51 (618)
|++||+|++++.-..+ |.+.++..+.. + .+..+... ..|..+.|..+..
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~ 96 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP--GSLTHISTDHQGQ 96 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--SCCSEEEECTTSS
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--CCCcEEEEcCCCC
Confidence 4689999988887765 88887665522 2 12233332 2788888875443
No 174
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.76 E-value=1e+02 Score=27.99 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=44.0
Q ss_pred CcHHHHHHHHhcCCCCccchhhhh-hc-----------------CchHHHHHHHHHcCChhHHHHHHHHHHh
Q 007100 296 GRRKLAAMLVEHEPRSSKQVPLLL-SI-----------------GEEDTALVKATESGDTDLVYLVIFHIWQ 349 (618)
Q Consensus 296 gR~~LA~~Ll~~E~~~~~qV~lLl-~~-----------------~~~~~AL~kAi~S~D~dLI~~vLl~l~~ 349 (618)
.+..||..-+.-|+-..+|-.-+| .+ |+++.||+-|-.=+|++||...+++.+.
T Consensus 43 ~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiGRg~~~eAlDiA~~L~D~qLilyAl~K~~~ 114 (161)
T 2ynq_A 43 IQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGRSQSEEALELARTIEDRDLIVYALLKYRE 114 (161)
T ss_dssp HHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHHHTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHcCCchHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 457888888888888877765555 21 7899999999999999999999987655
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=23.64 E-value=2.7e+02 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 007100 561 ERAEAYARIGMAKEAADAA 579 (618)
Q Consensus 561 ~r~~l~~k~~~~~eA~~~a 579 (618)
.....|.+.|++.+|++..
T Consensus 81 ~la~~~~~~g~~~~A~~~~ 99 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTL 99 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 4456777888888887654
No 176
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=23.63 E-value=5.4e+02 Score=25.43 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=68.7
Q ss_pred HHHHHHcCCcchHHhHHhHc-C--cChHHHHHHHHHHHHhcCChhHHHHhhcc--CCCCC---CchHH------------
Q 007100 477 IRTCIVLGNHRAAMKVKTEF-K--VSEKRWYWLKVFALATKRDWDALERFSKE--KRPPI---GYRPF------------ 536 (618)
Q Consensus 477 i~~li~~~~~k~a~kl~k~f-K--Vsdkr~~~lkl~aLa~~~~wdeLe~f~~s--KKspI---gyepf------------ 536 (618)
...+...|+.+.|...-++. + -.....|......+...|++++-...... +..|= .+.-.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 33455678877765543332 2 23456788888999999999886665532 11222 22222
Q ss_pred HHHHHhcCCHHHHHHhhccC----CC--------HHHHHHHHHHcCCHHHHHHHHHh
Q 007100 537 VEACVDADEKGEALKYIPKL----VD--------PRERAEAYARIGMAKEAADAASQ 581 (618)
Q Consensus 537 v~~~~~~~~~~eA~kyI~ki----~d--------~e~r~~l~~k~~~~~eA~~~a~~ 581 (618)
...+...|+.++|..+..++ ++ ......+|.+.|++.+|++...+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999998777654 32 23456788899999999877554
No 177
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=23.57 E-value=4.5e+02 Score=24.44 Aligned_cols=52 Identities=8% Similarity=-0.106 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhc
Q 007100 503 WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIP 554 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ 554 (618)
.|...-..+...++|++-...... ...+..+.-...++...|+.++|..++.
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444445555555443333211 1222233334444445555555544433
No 178
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=23.41 E-value=2.5e+02 Score=27.32 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred CcccCCCCeeEEEec-CCcEEEEeCCCCCc------c------ccccCCCCCCCCceeeeCCCe-EEEEE--CCeEEEEe
Q 007100 1 MAVSPNGNFVACFTH-DGRLVVNNTNFSSP------V------IDESCESALPPEQIAWCGMDS-VLLYW--NDMLVMVA 64 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~-~g~l~v~ssd~~~~------~------~e~~~~~~~~p~~~~WCG~d~-v~~~~--~~~l~l~g 64 (618)
+++||+|+++..-.. ++.++++..+-... + ..........|..+.|.-+.. +++.- .+.+.++-
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Q ss_pred CCCC-------------------ceEeecCCCeEEeecCC---ceEEeccC----cchhhhccc
Q 007100 65 PQAE-------------------PVQYFYDEPLVLIPECD---GVRILSNS----SMEFLQRVP 102 (618)
Q Consensus 65 ~~~~-------------------~~~~~~~~~~~l~~e~D---g~riit~~----~~~~l~~Vp 102 (618)
.... .+.|.-|+..+.++.-+ .++|+.-+ +...+..+|
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
No 179
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=23.15 E-value=1.7e+02 Score=29.69 Aligned_cols=47 Identities=11% Similarity=-0.132 Sum_probs=30.8
Q ss_pred cccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 2 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
+++|+|+++|.-..+|.+.|.+..-.+.+..+... ......+.|.|+
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~ 170 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMRDN 170 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEETT
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC-CCCEEEEEecCC
Confidence 46788999988888999988876545554444322 234456666654
No 180
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=23.05 E-value=4.4e+02 Score=24.20 Aligned_cols=54 Identities=6% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChhHHHHhhcc-----CC-----CC---CCchHHHHHHHhcCCHHHHHHhhccC
Q 007100 503 WYWLKVFALATKRDWDALERFSKE-----KR-----PP---IGYRPFVEACVDADEKGEALKYIPKL 556 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f~~s-----KK-----sp---Igyepfv~~~~~~~~~~eA~kyI~ki 556 (618)
.|...-..+...++|++-..+... ++ .| -.+.-...++...|+.++|..++.++
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355555667777777765554421 01 11 11222345556667777776665543
No 181
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=22.93 E-value=83 Score=33.48 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=36.2
Q ss_pred CcccCCCCeeEEEecCCcEEEEe-CCCCCccc-----------cccCC-----CCCCCCceeee--C--CCeEEEEEC-C
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNN-TNFSSPVI-----------DESCE-----SALPPEQIAWC--G--MDSVLLYWN-D 58 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~s-sd~~~~~~-----------e~~~~-----~~~~p~~~~WC--G--~d~v~~~~~-~ 58 (618)
+.+||+|+++|++++. .+.|+. ++-..... -|..+ .+++..++.|- | +.++|+-.. +
T Consensus 71 lvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~ 149 (452)
T 3pbp_A 71 VISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD 149 (452)
T ss_dssp EEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS
T ss_pred EEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC
Confidence 3689999999999865 444433 21110000 12221 35567899995 2 225554444 4
Q ss_pred eEEEEeCC
Q 007100 59 MLVMVAPQ 66 (618)
Q Consensus 59 ~l~l~g~~ 66 (618)
.|.++.-.
T Consensus 150 ~Ir~yDl~ 157 (452)
T 3pbp_A 150 TITMFDIL 157 (452)
T ss_dssp CEEEEETT
T ss_pred EEEEEEcc
Confidence 66666644
No 182
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=22.45 E-value=50 Score=30.16 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhcc--CCCCCCchHHHHHHHhcCCHHHHHHhhccCC--C------HHHHHHHHHHcCC
Q 007100 502 RWYWLKVFALATKRDWDALERFSKE--KRPPIGYRPFVEACVDADEKGEALKYIPKLV--D------PRERAEAYARIGM 571 (618)
Q Consensus 502 r~~~lkl~aLa~~~~wdeLe~f~~s--KKspIgyepfv~~~~~~~~~~eA~kyI~ki~--d------~e~r~~l~~k~~~ 571 (618)
..|...-..+...++|++-...... +..|- .+.+.+.|+.++|..++.++- + .-.....|...|+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 5667777777788888766555431 11111 356666677777776665531 1 2256677888889
Q ss_pred HHHHHHHHHh
Q 007100 572 AKEAADAASQ 581 (618)
Q Consensus 572 ~~eA~~~a~~ 581 (618)
+.+|++...+
T Consensus 155 ~~~A~~~~~~ 164 (258)
T 3uq3_A 155 WPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876544
No 183
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=22.39 E-value=1.3e+02 Score=28.93 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=29.1
Q ss_pred cccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeee
Q 007100 2 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WC 47 (618)
++||+|++++.-..+|.+.+++..-.+..... .....+..+.|+
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~ 218 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFD 218 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEES
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcC
Confidence 37899999999888999988875544433222 223356777786
No 184
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=22.29 E-value=4.7e+02 Score=24.23 Aligned_cols=102 Identities=7% Similarity=-0.149 Sum_probs=61.5
Q ss_pred HHHHcCCcchHHhHHhH-c--CcChHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHH
Q 007100 479 TCIVLGNHRAAMKVKTE-F--KVSEKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEAL 550 (618)
Q Consensus 479 ~li~~~~~k~a~kl~k~-f--KVsdkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~ 550 (618)
.+...|+.+.|.+.-++ . .-.+...|......+...|+|++-..+... ...+-.+.-...++...|+.++|.
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 34456666665443322 1 223356777888888888888876665532 233444555667778888888887
Q ss_pred HhhccC----CC----------------HHHHHHHHHHcCCHHHHHHHHH
Q 007100 551 KYIPKL----VD----------------PRERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 551 kyI~ki----~d----------------~e~r~~l~~k~~~~~eA~~~a~ 580 (618)
.+..+. ++ .......|.+.|++.+|.+...
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666543 11 1234566677777777765543
No 185
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=22.20 E-value=2.7e+02 Score=23.86 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=62.5
Q ss_pred HcCCcchHHhH-HhHcCcC--hHHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhh
Q 007100 482 VLGNHRAAMKV-KTEFKVS--EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYI 553 (618)
Q Consensus 482 ~~~~~k~a~kl-~k~fKVs--dkr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI 553 (618)
..|+.+.|.+. .+-.++. ....|...-.++.+.++|++-...... ...+..+.-....+...++.+.|..+.
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 96 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDAL 96 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555554332 2222333 234566667788899999877665532 234444555667778888888887666
Q ss_pred ccC----C-C---HHHHHHHHHHcCCHHHHHHHHH
Q 007100 554 PKL----V-D---PRERAEAYARIGMAKEAADAAS 580 (618)
Q Consensus 554 ~ki----~-d---~e~r~~l~~k~~~~~eA~~~a~ 580 (618)
.+. + + .......|.+.|++.+|++...
T Consensus 97 ~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 97 QRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 543 2 1 3366788999999999998754
No 186
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=22.05 E-value=1.3e+02 Score=28.90 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=29.1
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCC--CCccccccCCCCCCCCceeee
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNF--SSPVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~--~~~~~e~~~~~~~~p~~~~WC 47 (618)
+++||+|++||--..+|.+.|.+.+- .+.+..+. ....+...+.|.
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s 62 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWA 62 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEec
Confidence 46899999999988899998876432 12233332 223344566674
No 187
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=21.95 E-value=83 Score=30.98 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=18.9
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTN 25 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd 25 (618)
+++||+|+++|.-..+|.+.|....
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcc
Confidence 3578888888887778888777643
No 188
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=21.54 E-value=2.9e+02 Score=25.13 Aligned_cols=109 Identities=9% Similarity=0.019 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCcchHHhHHhH-cCcC--hHHHHHHHHHHHHhcCChhHHHHhhcc--C--CCCCC----chHHHHHHHh
Q 007100 474 SDTIRTCIVLGNHRAAMKVKTE-FKVS--EKRWYWLKVFALATKRDWDALERFSKE--K--RPPIG----YRPFVEACVD 542 (618)
Q Consensus 474 ~~Ti~~li~~~~~k~a~kl~k~-fKVs--dkr~~~lkl~aLa~~~~wdeLe~f~~s--K--KspIg----yepfv~~~~~ 542 (618)
...-..++..|+.+.|...-++ .+.. +...|...-..+...|+|++-...... + ..|-. |.-...+...
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344456677887776554433 2332 233677777789999999887665531 1 12222 4556777889
Q ss_pred cCCHHHHHHhhccCC--CHH------HHHHHHHHcCCHHHHHHHHHhc
Q 007100 543 ADEKGEALKYIPKLV--DPR------ERAEAYARIGMAKEAADAASQA 582 (618)
Q Consensus 543 ~~~~~eA~kyI~ki~--d~e------~r~~l~~k~~~~~eA~~~a~~~ 582 (618)
.|+.++|..+..+.- ++. ....+|.+.|++.+|++...+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999888764 222 4567788899999999876554
No 189
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=21.26 E-value=2e+02 Score=33.22 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=32.3
Q ss_pred CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCC
Q 007100 1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 50 (618)
Q Consensus 1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d 50 (618)
+++||+|+++|.=+.+|.|.|+..+-.+....+ ....+...+.|+.+.
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg~ 70 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKGI 70 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCCC
Confidence 578999999999889999998865433322222 223355677777533
No 190
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=20.95 E-value=2.3e+02 Score=23.40 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CHH-----HHHHH
Q 007100 501 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DPR-----ERAEA 565 (618)
Q Consensus 501 kr~~~lkl~aLa~~~~wdeLe~f~~s-----KKspIgyepfv~~~~~~~~~~eA~kyI~ki----~-d~e-----~r~~l 565 (618)
...|...-..+...++|++-...... ...|-.|--...++...|+.++|..+..+. + +.. .+...
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45666667777788888776655421 233334444566677778888777666543 2 221 22333
Q ss_pred HHHcCCHHHHHHHHH
Q 007100 566 YARIGMAKEAADAAS 580 (618)
Q Consensus 566 ~~k~~~~~eA~~~a~ 580 (618)
+.+.|.+.+|++...
T Consensus 127 ~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 127 IVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc
Confidence 555566666665543
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=20.81 E-value=3.9e+02 Score=24.61 Aligned_cols=36 Identities=3% Similarity=-0.020 Sum_probs=21.2
Q ss_pred CCCCceeeeCCCeEEEEE--CCeEEEEeCCCCceEeec
Q 007100 39 LPPEQIAWCGMDSVLLYW--NDMLVMVAPQAEPVQYFY 74 (618)
Q Consensus 39 ~~p~~~~WCG~d~v~~~~--~~~l~l~g~~~~~~~~~~ 74 (618)
..|..|.+-.+..+.+.- +..|..+.+.+....+..
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~ 99 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPL 99 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEC
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecC
Confidence 356677776555555543 356777777765544543
No 192
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=20.27 E-value=3.4e+02 Score=27.38 Aligned_cols=47 Identities=4% Similarity=-0.138 Sum_probs=30.6
Q ss_pred cccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCC
Q 007100 2 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 49 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~ 49 (618)
+++++|++++.-..+|.+.|.+..-.+....+.. ...+...+.|.|+
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~ 184 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQYDER 184 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEECCSS
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEECCC
Confidence 5778899999888899998887544444434332 2335566777543
No 193
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=20.20 E-value=83 Score=29.15 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=17.2
Q ss_pred cccCCCCeeEEEecC-----------CcEEEEeCC
Q 007100 2 AVSPNGNFVACFTHD-----------GRLVVNNTN 25 (618)
Q Consensus 2 ~~Sp~g~~iAl~~~~-----------g~l~v~ssd 25 (618)
++||+|++|+....+ +.|+++..+
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 578999998887764 457776543
No 194
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=20.10 E-value=98 Score=29.86 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=29.1
Q ss_pred CcccCC---CCeeEEEecCCcEEEEeCCCCC-ccccccCCCCCCCCceeee
Q 007100 1 MAVSPN---GNFVACFTHDGRLVVNNTNFSS-PVIDESCESALPPEQIAWC 47 (618)
Q Consensus 1 ~~~Sp~---g~~iAl~~~~g~l~v~ssd~~~-~~~e~~~~~~~~p~~~~WC 47 (618)
++.||+ |+++|.-..+|.+.+.+.+-.+ ....+.. .......+.|+
T Consensus 71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~ 120 (357)
T 3i2n_A 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG-HKEIINAIDGI 120 (357)
T ss_dssp EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC-CSSCEEEEEEE
T ss_pred EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe-cccceEEEeec
Confidence 356787 7999988889999888755444 4434432 22344556554
No 195
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=20.02 E-value=2.9e+02 Score=24.64 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCChhHHHHh
Q 007100 503 WYWLKVFALATKRDWDALERF 523 (618)
Q Consensus 503 ~~~lkl~aLa~~~~wdeLe~f 523 (618)
.|...-.++...|+|++-...
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHH
Confidence 444444555555555544433
Done!