Query 007101
Match_columns 618
No_of_seqs 614 out of 3608
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 18:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 4.1E-38 8.9E-43 352.3 47.1 447 58-521 190-767 (2102)
2 PLN03200 cellulose synthase-in 100.0 2.2E-36 4.7E-41 338.6 45.9 440 56-520 143-682 (2102)
3 KOG0166 Karyopherin (importin) 100.0 8.3E-37 1.8E-41 298.6 32.1 364 58-478 110-487 (514)
4 KOG0166 Karyopherin (importin) 100.0 2.8E-36 6E-41 294.9 33.1 402 59-518 68-486 (514)
5 COG5064 SRP1 Karyopherin (impo 100.0 4.5E-36 9.7E-41 270.6 23.4 376 58-477 115-496 (526)
6 COG5064 SRP1 Karyopherin (impo 100.0 4.2E-35 9E-40 264.4 24.2 412 53-519 67-497 (526)
7 KOG4224 Armadillo repeat prote 100.0 1.9E-35 4.1E-40 268.9 17.9 375 103-534 84-462 (550)
8 KOG4224 Armadillo repeat prote 100.0 7.3E-34 1.6E-38 258.6 20.5 388 76-520 98-495 (550)
9 PF05804 KAP: Kinesin-associat 99.9 2.4E-23 5.1E-28 216.6 38.4 378 79-519 265-650 (708)
10 PF05804 KAP: Kinesin-associat 99.9 3.7E-22 8.1E-27 207.7 34.2 357 61-480 290-652 (708)
11 KOG2122 Beta-catenin-binding p 99.9 2.7E-21 5.8E-26 203.5 22.3 323 82-405 213-603 (2195)
12 KOG4500 Rho/Rac GTPase guanine 99.8 9.3E-19 2E-23 164.0 25.9 428 78-519 57-520 (604)
13 KOG1048 Neural adherens juncti 99.8 1.5E-19 3.3E-24 183.4 19.8 393 57-519 233-685 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 2E-15 4.4E-20 156.5 35.6 396 76-519 51-463 (503)
15 KOG4199 Uncharacterized conser 99.8 2.4E-15 5.2E-20 137.0 29.9 342 134-519 77-445 (461)
16 KOG2122 Beta-catenin-binding p 99.8 8.4E-17 1.8E-21 170.3 22.5 349 133-520 211-603 (2195)
17 KOG4199 Uncharacterized conser 99.7 6.9E-15 1.5E-19 134.0 28.4 311 78-410 122-451 (461)
18 KOG1048 Neural adherens juncti 99.7 1E-15 2.2E-20 156.0 21.9 323 159-519 235-642 (717)
19 PF10508 Proteasom_PSMB: Prote 99.7 5.3E-14 1.1E-18 146.0 35.2 367 107-525 41-427 (503)
20 KOG4500 Rho/Rac GTPase guanine 99.7 2.1E-14 4.5E-19 135.2 26.0 349 131-517 57-430 (604)
21 KOG2171 Karyopherin (importin) 99.7 1.9E-14 4E-19 152.0 26.9 402 54-518 115-549 (1075)
22 PRK13800 putative oxidoreducta 99.6 2.2E-13 4.9E-18 151.7 29.6 277 103-515 620-896 (897)
23 KOG1222 Kinesin associated pro 99.6 1.4E-12 3.1E-17 124.5 28.5 405 50-521 253-666 (791)
24 PRK09687 putative lyase; Provi 99.6 1.3E-13 2.8E-18 131.1 21.7 254 158-515 24-279 (280)
25 KOG0168 Putative ubiquitin fus 99.6 8.2E-13 1.8E-17 134.3 27.3 246 76-344 181-437 (1051)
26 KOG1222 Kinesin associated pro 99.6 6.8E-13 1.5E-17 126.7 24.6 357 60-480 303-666 (791)
27 PRK09687 putative lyase; Provi 99.6 3.2E-13 6.9E-18 128.4 22.7 254 105-474 24-279 (280)
28 KOG1293 Proteins containing ar 99.6 5.8E-13 1.3E-17 132.5 22.1 394 76-519 22-534 (678)
29 PF04826 Arm_2: Armadillo-like 99.5 2.2E-12 4.9E-17 119.6 20.9 226 101-352 9-252 (254)
30 PRK13800 putative oxidoreducta 99.5 9.5E-12 2.1E-16 138.8 29.5 265 74-474 632-896 (897)
31 PF04826 Arm_2: Armadillo-like 99.5 6.3E-12 1.4E-16 116.6 22.6 193 58-279 13-206 (254)
32 KOG4350 Uncharacterized conser 99.5 3.2E-14 6.9E-19 132.3 5.0 77 541-617 36-112 (620)
33 PHA02713 hypothetical protein; 99.5 7.2E-14 1.6E-18 147.1 7.7 73 541-613 17-91 (557)
34 KOG4441 Proteins containing BT 99.5 4.2E-14 9.1E-19 148.0 5.7 85 533-617 20-104 (571)
35 KOG2171 Karyopherin (importin) 99.5 5.2E-11 1.1E-15 126.4 27.9 385 76-521 93-507 (1075)
36 KOG2023 Nuclear transport rece 99.4 1.7E-11 3.6E-16 121.8 21.5 438 46-521 117-735 (885)
37 PF00651 BTB: BTB/POZ domain; 99.4 2.5E-13 5.5E-18 111.6 5.7 76 541-616 2-79 (111)
38 KOG2023 Nuclear transport rece 99.4 2.6E-11 5.6E-16 120.5 19.8 353 104-517 128-548 (885)
39 cd00256 VATPase_H VATPase_H, r 99.4 2.2E-10 4.8E-15 113.2 25.9 346 157-519 53-426 (429)
40 PHA02790 Kelch-like protein; P 99.4 2.5E-13 5.4E-18 141.0 5.3 74 542-617 15-90 (480)
41 cd00020 ARM Armadillo/beta-cat 99.4 1.9E-11 4.2E-16 102.1 14.9 119 244-362 2-120 (120)
42 cd00020 ARM Armadillo/beta-cat 99.4 2.4E-11 5.1E-16 101.5 14.4 117 203-319 3-119 (120)
43 KOG2160 Armadillo/beta-catenin 99.3 4E-10 8.6E-15 105.9 22.3 192 69-279 89-283 (342)
44 PF01602 Adaptin_N: Adaptin N 99.3 2.7E-10 5.9E-15 121.7 24.0 400 62-520 80-485 (526)
45 cd00256 VATPase_H VATPase_H, r 99.3 2.1E-09 4.6E-14 106.4 27.9 321 56-402 52-424 (429)
46 PF01602 Adaptin_N: Adaptin N 99.3 8.3E-10 1.8E-14 117.9 24.7 387 76-521 55-447 (526)
47 smart00225 BTB Broad-Complex, 99.3 9.1E-12 2E-16 98.0 7.1 67 551-617 1-67 (90)
48 PHA03098 kelch-like protein; P 99.3 6.3E-12 1.4E-16 133.8 6.9 68 546-617 6-75 (534)
49 KOG1293 Proteins containing ar 99.2 3.1E-09 6.7E-14 106.4 24.7 302 84-405 161-535 (678)
50 KOG1241 Karyopherin (importin) 99.2 1.3E-08 2.9E-13 103.3 26.4 345 131-522 105-481 (859)
51 KOG1241 Karyopherin (importin) 99.2 3.8E-08 8.3E-13 100.1 28.3 435 60-520 128-628 (859)
52 PTZ00429 beta-adaptin; Provisi 99.1 3.2E-07 6.9E-12 98.3 33.7 386 76-521 81-474 (746)
53 KOG0168 Putative ubiquitin fus 99.1 2E-08 4.3E-13 103.1 23.2 222 53-302 207-437 (1051)
54 PTZ00429 beta-adaptin; Provisi 99.1 5.6E-07 1.2E-11 96.5 35.0 207 76-320 118-326 (746)
55 KOG0946 ER-Golgi vesicle-tethe 99.1 1.5E-07 3.3E-12 96.1 28.1 285 105-409 23-352 (970)
56 KOG2160 Armadillo/beta-catenin 99.1 2.2E-08 4.8E-13 94.3 20.7 184 180-364 98-284 (342)
57 KOG3678 SARM protein (with ste 99.1 1.3E-08 2.7E-13 97.7 18.5 275 201-521 174-455 (832)
58 KOG3678 SARM protein (with ste 99.0 2.9E-08 6.3E-13 95.2 17.9 277 96-403 172-452 (832)
59 KOG0946 ER-Golgi vesicle-tethe 99.0 3.1E-06 6.7E-11 86.9 31.2 333 55-413 20-410 (970)
60 KOG1824 TATA-binding protein-i 98.9 2.6E-07 5.6E-12 96.3 23.5 404 73-520 580-1038(1233)
61 KOG0211 Protein phosphatase 2A 98.9 9.2E-08 2E-12 101.2 21.0 416 28-519 246-665 (759)
62 KOG1517 Guanine nucleotide bin 98.9 2.7E-08 5.8E-13 104.3 16.1 270 33-327 448-739 (1387)
63 KOG2075 Topoisomerase TOP1-int 98.9 1.7E-09 3.6E-14 104.2 6.8 84 532-616 98-186 (521)
64 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.1E-08 8.9E-13 96.2 16.8 227 59-308 57-302 (312)
65 PF03224 V-ATPase_H_N: V-ATPas 98.9 7E-08 1.5E-12 94.6 18.3 226 158-393 56-304 (312)
66 KOG2759 Vacuolar H+-ATPase V1 98.9 1.6E-06 3.4E-11 83.1 26.2 346 158-519 66-439 (442)
67 KOG1062 Vesicle coat complex A 98.9 5.2E-06 1.1E-10 85.6 31.6 403 62-522 108-548 (866)
68 KOG2759 Vacuolar H+-ATPase V1 98.9 1.2E-06 2.5E-11 83.9 25.1 317 57-403 65-438 (442)
69 KOG0212 Uncharacterized conser 98.9 7.4E-08 1.6E-12 94.8 17.5 354 102-518 82-444 (675)
70 COG5215 KAP95 Karyopherin (imp 98.9 1.2E-06 2.7E-11 86.4 25.5 351 109-521 99-482 (858)
71 KOG2973 Uncharacterized conser 98.9 5.4E-07 1.2E-11 82.5 21.0 292 210-520 6-317 (353)
72 KOG4413 26S proteasome regulat 98.9 3.8E-06 8.2E-11 77.5 26.3 371 106-515 84-481 (524)
73 COG5215 KAP95 Karyopherin (imp 98.8 5.4E-06 1.2E-10 82.1 27.6 428 62-521 178-671 (858)
74 KOG4591 Uncharacterized conser 98.8 2.4E-09 5.1E-14 90.3 3.8 78 537-617 54-134 (280)
75 KOG0213 Splicing factor 3b, su 98.8 1.6E-06 3.5E-11 88.2 23.7 259 252-522 802-1069(1172)
76 KOG1062 Vesicle coat complex A 98.8 7.7E-06 1.7E-10 84.4 28.0 392 58-519 9-415 (866)
77 KOG0212 Uncharacterized conser 98.7 3.4E-07 7.4E-12 90.2 16.1 319 156-521 83-409 (675)
78 KOG4413 26S proteasome regulat 98.7 4.8E-06 1E-10 76.8 20.2 309 180-519 58-378 (524)
79 KOG1242 Protein containing ada 98.7 1.5E-06 3.3E-11 87.5 17.9 326 180-522 111-448 (569)
80 KOG0211 Protein phosphatase 2A 98.6 3E-06 6.5E-11 90.0 20.5 369 129-519 250-626 (759)
81 KOG0213 Splicing factor 3b, su 98.6 4.1E-06 8.8E-11 85.3 20.3 338 131-524 568-918 (1172)
82 TIGR02270 conserved hypothetic 98.6 1.2E-05 2.6E-10 80.6 23.8 209 209-518 88-296 (410)
83 KOG1824 TATA-binding protein-i 98.6 2.1E-05 4.5E-10 82.6 25.3 259 251-518 859-1186(1233)
84 KOG1517 Guanine nucleotide bin 98.6 1.5E-06 3.3E-11 91.6 16.6 259 78-367 451-737 (1387)
85 KOG1059 Vesicle coat complex A 98.6 5.8E-05 1.3E-09 77.1 26.7 170 75-279 193-366 (877)
86 KOG1242 Protein containing ada 98.6 2.3E-05 5.1E-10 79.2 23.1 369 105-519 97-484 (569)
87 PF05536 Neurochondrin: Neuroc 98.5 0.00014 3.1E-09 76.2 28.9 202 57-280 5-215 (543)
88 KOG2973 Uncharacterized conser 98.5 3.6E-05 7.9E-10 70.8 21.1 244 159-418 5-288 (353)
89 PF14664 RICTOR_N: Rapamycin-i 98.5 8.6E-05 1.9E-09 73.7 24.3 246 93-362 14-269 (371)
90 KOG1060 Vesicle coat complex A 98.5 0.00036 7.8E-09 72.3 28.6 360 108-519 39-459 (968)
91 KOG1061 Vesicle coat complex A 98.5 2.9E-05 6.2E-10 80.4 21.0 384 80-523 30-420 (734)
92 COG5181 HSH155 U2 snRNP splice 98.5 1.2E-05 2.5E-10 80.5 17.4 338 106-522 606-950 (975)
93 TIGR02270 conserved hypothetic 98.4 9.1E-05 2E-09 74.4 23.4 244 104-478 54-297 (410)
94 KOG4646 Uncharacterized conser 98.4 4.3E-06 9.3E-11 66.7 10.7 119 131-258 32-150 (173)
95 KOG1789 Endocytosis protein RM 98.4 0.0045 9.8E-08 66.4 35.4 289 223-521 1741-2079(2235)
96 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00053 1.1E-08 68.2 27.4 245 145-404 13-270 (371)
97 KOG4682 Uncharacterized conser 98.3 3.7E-07 8.1E-12 86.1 3.6 82 535-617 55-140 (488)
98 KOG0783 Uncharacterized conser 98.3 4E-07 8.8E-12 93.3 3.9 67 547-613 556-634 (1267)
99 PF05536 Neurochondrin: Neuroc 98.3 0.0015 3.2E-08 68.7 30.2 241 106-362 7-261 (543)
100 KOG1789 Endocytosis protein RM 98.3 0.0003 6.5E-09 74.8 23.6 354 79-460 1741-2142(2235)
101 KOG4646 Uncharacterized conser 98.3 7.9E-06 1.7E-10 65.3 9.4 130 158-296 17-146 (173)
102 COG1413 FOG: HEAT repeat [Ener 98.2 0.00039 8.4E-09 69.5 23.3 186 157-402 43-241 (335)
103 COG5369 Uncharacterized conser 98.2 2.5E-05 5.5E-10 77.0 13.9 260 134-401 407-739 (743)
104 KOG0783 Uncharacterized conser 98.2 6.5E-07 1.4E-11 91.9 3.1 112 502-613 654-776 (1267)
105 KOG2259 Uncharacterized conser 98.2 1.1E-05 2.4E-10 81.3 11.5 261 159-441 236-513 (823)
106 KOG2734 Uncharacterized conser 98.2 0.00015 3.2E-09 70.1 18.4 236 229-499 106-371 (536)
107 COG1413 FOG: HEAT repeat [Ener 98.2 0.00098 2.1E-08 66.6 25.7 214 104-399 43-269 (335)
108 KOG1240 Protein kinase contain 98.2 3.8E-05 8.3E-10 82.8 15.8 282 78-404 438-726 (1431)
109 KOG1059 Vesicle coat complex A 98.2 0.0021 4.5E-08 66.2 26.8 252 58-363 145-402 (877)
110 KOG2734 Uncharacterized conser 98.2 0.0021 4.6E-08 62.4 24.6 265 82-362 103-400 (536)
111 KOG2259 Uncharacterized conser 98.1 1.9E-05 4.1E-10 79.8 10.9 187 209-407 200-406 (823)
112 KOG1240 Protein kinase contain 98.1 0.00025 5.5E-09 76.7 19.3 300 159-521 424-728 (1431)
113 PF10165 Ric8: Guanine nucleot 98.1 0.0018 3.8E-08 66.6 24.9 290 227-520 1-339 (446)
114 PF12348 CLASP_N: CLASP N term 98.1 2.7E-05 6E-10 72.9 10.1 184 301-521 17-209 (228)
115 PF10165 Ric8: Guanine nucleot 98.0 0.0005 1.1E-08 70.6 19.2 275 84-364 2-339 (446)
116 COG5369 Uncharacterized conser 98.0 3.5E-05 7.5E-10 76.0 10.0 190 266-480 406-597 (743)
117 COG5181 HSH155 U2 snRNP splice 98.0 5E-05 1.1E-09 76.1 11.3 264 251-522 606-874 (975)
118 COG5240 SEC21 Vesicle coat com 98.0 0.01 2.2E-07 59.7 26.9 351 76-519 203-556 (898)
119 KOG1060 Vesicle coat complex A 98.0 0.0046 1E-07 64.4 25.2 302 131-480 123-461 (968)
120 PF00514 Arm: Armadillo/beta-c 98.0 9.2E-06 2E-10 52.3 3.7 40 93-144 1-40 (41)
121 KOG0915 Uncharacterized conser 98.0 0.0037 8E-08 69.8 25.1 297 208-520 999-1308(1702)
122 PF00514 Arm: Armadillo/beta-c 97.9 1.4E-05 3E-10 51.4 4.1 41 238-278 1-41 (41)
123 KOG1061 Vesicle coat complex A 97.9 0.00065 1.4E-08 70.7 17.7 349 131-521 29-382 (734)
124 PF12348 CLASP_N: CLASP N term 97.8 0.00041 8.9E-09 65.0 13.6 182 217-404 17-207 (228)
125 KOG1077 Vesicle coat complex A 97.8 0.048 1E-06 56.5 28.2 306 79-416 164-501 (938)
126 COG5240 SEC21 Vesicle coat com 97.8 0.028 6.1E-07 56.7 25.6 304 82-477 246-555 (898)
127 KOG1943 Beta-tubulin folding c 97.8 0.064 1.4E-06 58.4 29.9 258 249-520 341-613 (1133)
128 KOG1077 Vesicle coat complex A 97.7 0.0099 2.2E-07 61.3 22.2 285 180-519 126-434 (938)
129 PF12460 MMS19_C: RNAPII trans 97.7 0.0055 1.2E-07 62.9 21.0 363 106-520 1-396 (415)
130 PF13646 HEAT_2: HEAT repeats; 97.7 0.00025 5.4E-09 54.9 8.6 86 376-514 1-88 (88)
131 COG5231 VMA13 Vacuolar H+-ATPa 97.7 0.0049 1.1E-07 57.4 17.7 226 76-319 162-427 (432)
132 KOG0567 HEAT repeat-containing 97.7 0.0076 1.7E-07 54.8 18.1 244 77-401 19-278 (289)
133 PF13646 HEAT_2: HEAT repeats; 97.7 0.00016 3.4E-09 56.1 6.8 86 209-316 1-88 (88)
134 KOG0915 Uncharacterized conser 97.6 0.009 1.9E-07 66.9 21.7 358 131-521 972-1347(1702)
135 PF12460 MMS19_C: RNAPII trans 97.6 0.018 4E-07 59.0 22.8 339 78-480 17-397 (415)
136 KOG0567 HEAT repeat-containing 97.5 0.014 3E-07 53.1 18.0 225 209-518 38-280 (289)
137 KOG2838 Uncharacterized conser 97.5 6.5E-05 1.4E-09 67.3 3.4 81 533-614 115-197 (401)
138 PF09759 Atx10homo_assoc: Spin 97.5 0.00042 9.1E-09 53.9 7.3 68 181-248 2-71 (102)
139 COG5096 Vesicle coat complex, 97.5 0.19 4.2E-06 53.9 29.9 160 131-319 35-194 (757)
140 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.0075 1.6E-07 56.2 16.3 225 131-362 164-428 (432)
141 KOG1943 Beta-tubulin folding c 97.5 0.035 7.6E-07 60.4 23.5 257 103-403 340-611 (1133)
142 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00024 5.2E-09 49.2 4.4 55 305-360 1-55 (55)
143 PF09759 Atx10homo_assoc: Spin 97.4 0.00099 2.2E-08 51.8 7.9 65 224-288 3-69 (102)
144 KOG4535 HEAT and armadillo rep 97.4 0.016 3.5E-07 57.1 17.7 305 180-521 270-606 (728)
145 COG5096 Vesicle coat complex, 97.4 0.037 8.1E-07 59.2 21.6 162 180-363 34-196 (757)
146 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00021 4.5E-09 49.5 3.5 55 347-401 1-55 (55)
147 KOG4151 Myosin assembly protei 97.4 0.0054 1.2E-07 64.4 15.1 225 93-341 493-720 (748)
148 PRK14707 hypothetical protein; 97.3 0.16 3.6E-06 59.3 27.1 322 61-405 163-490 (2710)
149 KOG4535 HEAT and armadillo rep 97.3 0.0028 6E-08 62.2 11.8 306 76-404 268-604 (728)
150 KOG0511 Ankyrin repeat protein 97.3 0.00012 2.5E-09 69.0 2.4 58 559-617 301-362 (516)
151 KOG1991 Nuclear transport rece 97.3 0.42 9E-06 52.0 27.6 318 59-403 412-757 (1010)
152 KOG1058 Vesicle coat complex C 97.2 0.032 7E-07 58.2 18.7 338 131-518 114-463 (948)
153 PF08569 Mo25: Mo25-like; Int 97.2 0.25 5.5E-06 48.4 24.8 262 131-411 14-291 (335)
154 KOG3036 Protein involved in ce 97.2 0.041 8.9E-07 49.5 16.7 151 80-246 96-256 (293)
155 KOG2032 Uncharacterized conser 97.2 0.13 2.8E-06 51.3 21.2 266 247-518 252-531 (533)
156 KOG1058 Vesicle coat complex C 97.1 0.099 2.1E-06 54.7 21.0 238 77-365 220-466 (948)
157 smart00185 ARM Armadillo/beta- 97.1 0.001 2.2E-08 42.6 4.7 39 94-144 2-40 (41)
158 KOG2838 Uncharacterized conser 97.1 0.00061 1.3E-08 61.2 4.5 121 487-616 180-329 (401)
159 smart00185 ARM Armadillo/beta- 97.1 0.0014 2.9E-08 42.1 5.0 39 239-277 2-40 (41)
160 PRK14707 hypothetical protein; 97.1 0.79 1.7E-05 54.1 28.6 299 80-399 308-609 (2710)
161 PF11841 DUF3361: Domain of un 97.0 0.018 3.8E-07 48.9 12.2 134 97-242 4-137 (160)
162 PF06025 DUF913: Domain of Unk 97.0 0.022 4.8E-07 56.9 14.9 202 82-289 3-243 (379)
163 PF08569 Mo25: Mo25-like; Int 97.0 0.047 1E-06 53.4 16.7 204 151-365 70-286 (335)
164 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0047 1E-07 48.2 7.8 92 308-401 3-94 (97)
165 KOG1078 Vesicle coat complex C 97.0 0.69 1.5E-05 49.1 29.2 271 180-518 260-532 (865)
166 PF07814 WAPL: Wings apart-lik 96.9 0.095 2.1E-06 52.4 18.8 290 50-364 14-357 (361)
167 KOG2062 26S proteasome regulat 96.9 0.12 2.7E-06 54.0 19.2 159 207-390 519-681 (929)
168 KOG1248 Uncharacterized conser 96.8 0.98 2.1E-05 50.3 26.3 181 217-404 664-857 (1176)
169 KOG1078 Vesicle coat complex C 96.8 0.44 9.5E-06 50.5 22.4 270 131-476 260-531 (865)
170 KOG3036 Protein involved in ce 96.8 0.21 4.5E-06 45.2 17.4 146 181-329 95-255 (293)
171 PF04078 Rcd1: Cell differenti 96.8 0.022 4.8E-07 52.3 11.7 178 80-276 67-260 (262)
172 KOG1991 Nuclear transport rece 96.8 0.59 1.3E-05 50.9 23.7 162 135-304 391-560 (1010)
173 KOG4151 Myosin assembly protei 96.7 0.025 5.4E-07 59.7 13.2 204 145-362 492-699 (748)
174 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.34 7.3E-06 53.0 22.1 198 99-305 112-333 (802)
175 PF08045 CDC14: Cell division 96.7 0.041 8.9E-07 51.0 13.1 100 180-279 106-208 (257)
176 KOG1020 Sister chromatid cohes 96.7 1.7 3.7E-05 49.8 29.7 128 75-237 828-961 (1692)
177 PF05918 API5: Apoptosis inhib 96.7 0.34 7.3E-06 50.4 20.9 120 180-317 37-159 (556)
178 PF06025 DUF913: Domain of Unk 96.6 0.094 2E-06 52.5 15.9 194 184-386 3-208 (379)
179 PF11841 DUF3361: Domain of un 96.6 0.075 1.6E-06 45.1 12.8 124 201-325 5-136 (160)
180 KOG1832 HIV-1 Vpr-binding prot 96.6 0.36 7.7E-06 51.7 19.9 343 134-488 371-784 (1516)
181 PF12717 Cnd1: non-SMC mitotic 96.6 0.18 3.8E-06 44.9 16.0 93 262-363 1-93 (178)
182 KOG1248 Uncharacterized conser 96.5 0.54 1.2E-05 52.3 21.7 220 131-362 669-898 (1176)
183 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.036 7.8E-07 43.2 9.6 90 266-360 3-94 (97)
184 KOG1967 DNA repair/transcripti 96.4 0.031 6.8E-07 59.6 11.4 152 206-360 866-1022(1030)
185 PF07814 WAPL: Wings apart-lik 96.4 0.18 3.8E-06 50.5 16.5 270 106-405 23-357 (361)
186 PF05004 IFRD: Interferon-rela 96.3 0.41 8.9E-06 46.7 18.1 179 180-362 58-257 (309)
187 KOG1967 DNA repair/transcripti 96.3 0.065 1.4E-06 57.4 12.9 190 251-475 817-1022(1030)
188 PF08045 CDC14: Cell division 96.3 0.065 1.4E-06 49.7 11.4 99 131-236 106-207 (257)
189 KOG2062 26S proteasome regulat 96.3 0.3 6.4E-06 51.3 17.1 133 334-519 520-654 (929)
190 PF05918 API5: Apoptosis inhib 96.2 1.8 3.8E-05 45.3 22.7 281 76-407 35-349 (556)
191 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.01 2.2E-07 47.6 5.1 71 208-278 44-115 (119)
192 PF12717 Cnd1: non-SMC mitotic 96.2 0.35 7.5E-06 43.0 15.6 91 180-279 3-93 (178)
193 PF05004 IFRD: Interferon-rela 96.2 0.39 8.5E-06 46.8 17.1 180 77-278 57-257 (309)
194 PF04078 Rcd1: Cell differenti 96.2 1 2.2E-05 41.8 18.3 223 130-360 9-260 (262)
195 PF12719 Cnd3: Nuclear condens 96.1 0.42 9.1E-06 46.6 17.2 157 249-413 26-195 (298)
196 PF03931 Skp1_POZ: Skp1 family 96.1 0.03 6.5E-07 39.6 6.7 50 557-609 9-58 (62)
197 KOG1788 Uncharacterized conser 96.1 2.9 6.3E-05 46.0 23.6 389 76-499 480-960 (2799)
198 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.021 4.6E-07 45.8 6.3 72 158-236 44-115 (119)
199 KOG4653 Uncharacterized conser 96.0 0.2 4.4E-06 53.4 14.9 178 76-281 740-921 (982)
200 KOG4464 Signaling protein RIC- 96.0 1.4 3.1E-05 43.1 19.1 173 55-237 43-232 (532)
201 KOG2274 Predicted importin 9 [ 96.0 0.6 1.3E-05 50.3 18.1 169 103-292 529-703 (1005)
202 KOG1020 Sister chromatid cohes 95.9 4.6 9.9E-05 46.6 29.3 142 103-278 815-960 (1692)
203 KOG4464 Signaling protein RIC- 95.8 1 2.2E-05 44.1 17.2 247 220-482 110-407 (532)
204 PF02985 HEAT: HEAT repeat; I 95.8 0.014 3.1E-07 34.5 3.3 29 491-519 2-30 (31)
205 PF02985 HEAT: HEAT repeat; I 95.7 0.016 3.4E-07 34.3 3.2 29 335-363 2-30 (31)
206 KOG2999 Regulator of Rac1, req 95.6 0.25 5.5E-06 49.9 12.9 164 58-241 84-247 (713)
207 PF13764 E3_UbLigase_R4: E3 ub 95.5 2.5 5.3E-05 46.6 21.3 184 152-346 112-332 (802)
208 KOG4653 Uncharacterized conser 95.5 0.42 9.1E-06 51.1 14.6 212 131-360 742-962 (982)
209 KOG0414 Chromosome condensatio 95.4 0.26 5.7E-06 54.5 13.4 163 105-303 920-1083(1251)
210 PF11701 UNC45-central: Myosin 95.4 0.14 3E-06 44.3 9.4 146 251-401 5-157 (157)
211 PF02214 BTB_2: BTB/POZ domain 95.1 0.028 6.1E-07 43.9 4.0 63 552-615 1-68 (94)
212 PF12719 Cnd3: Nuclear condens 95.1 0.77 1.7E-05 44.8 14.8 170 104-303 26-209 (298)
213 KOG1243 Protein kinase [Genera 95.1 0.2 4.2E-06 52.5 10.7 228 151-402 287-514 (690)
214 KOG2274 Predicted importin 9 [ 95.1 6.5 0.00014 42.9 24.3 220 130-364 464-691 (1005)
215 KOG1566 Conserved protein Mo25 95.1 3.2 7E-05 39.4 18.1 204 203-409 75-292 (342)
216 PF04063 DUF383: Domain of unk 95.0 0.15 3.2E-06 45.5 8.6 113 302-414 6-143 (192)
217 PF04063 DUF383: Domain of unk 94.9 0.3 6.6E-06 43.6 10.2 112 260-373 6-143 (192)
218 KOG2716 Polymerase delta-inter 94.9 0.074 1.6E-06 48.2 6.3 65 552-617 7-73 (230)
219 PF11701 UNC45-central: Myosin 94.8 0.22 4.8E-06 43.1 9.0 132 131-275 20-156 (157)
220 COG5116 RPN2 26S proteasome re 94.8 0.38 8.2E-06 48.9 11.4 125 248-388 550-676 (926)
221 KOG2025 Chromosome condensatio 94.7 1.7 3.7E-05 45.7 16.0 127 180-315 61-188 (892)
222 KOG2999 Regulator of Rac1, req 94.6 4 8.6E-05 41.8 18.0 166 106-288 85-253 (713)
223 KOG1832 HIV-1 Vpr-binding prot 94.6 2.7 5.8E-05 45.4 17.3 316 76-415 366-785 (1516)
224 KOG1243 Protein kinase [Genera 94.4 0.41 8.8E-06 50.2 11.2 187 246-475 327-513 (690)
225 KOG2956 CLIP-associating prote 94.4 3.5 7.7E-05 41.3 16.9 190 159-362 285-477 (516)
226 KOG1566 Conserved protein Mo25 94.4 2.8 6E-05 39.8 15.4 205 285-519 73-287 (342)
227 COG5116 RPN2 26S proteasome re 94.1 0.34 7.5E-06 49.2 9.6 129 338-519 521-651 (926)
228 PF14668 RICTOR_V: Rapamycin-i 94.1 0.16 3.4E-06 37.0 5.3 67 350-416 4-71 (73)
229 KOG3665 ZYG-1-like serine/thre 94.0 2.8 6.2E-05 45.8 17.0 180 314-510 494-689 (699)
230 PF06371 Drf_GBD: Diaphanous G 93.9 0.33 7.1E-06 43.6 8.6 91 145-235 95-186 (187)
231 COG5656 SXM1 Importin, protein 93.8 11 0.00024 40.2 25.6 346 29-404 367-758 (970)
232 KOG2025 Chromosome condensatio 93.8 9.2 0.0002 40.6 19.0 105 103-232 84-189 (892)
233 KOG2137 Protein kinase [Signal 93.7 1.6 3.5E-05 46.2 13.9 139 330-506 386-525 (700)
234 KOG0414 Chromosome condensatio 93.7 0.84 1.8E-05 50.8 12.3 163 158-345 920-1083(1251)
235 KOG2956 CLIP-associating prote 93.6 5.5 0.00012 40.0 16.5 146 158-319 330-476 (516)
236 PF14668 RICTOR_V: Rapamycin-i 93.5 0.49 1.1E-05 34.5 7.1 67 80-157 4-70 (73)
237 KOG1820 Microtubule-associated 93.5 2.7 5.8E-05 46.3 15.7 185 209-402 255-442 (815)
238 KOG3473 RNA polymerase II tran 93.4 0.2 4.4E-06 37.6 5.0 64 552-616 19-91 (112)
239 KOG2032 Uncharacterized conser 93.3 10 0.00022 38.5 17.8 142 216-362 267-415 (533)
240 COG5209 RCD1 Uncharacterized p 93.2 2.5 5.5E-05 37.8 12.1 149 80-244 117-275 (315)
241 PF12530 DUF3730: Protein of u 93.2 7.3 0.00016 36.3 16.9 169 74-276 12-187 (234)
242 KOG2137 Protein kinase [Signal 93.2 6.1 0.00013 42.1 16.9 213 152-387 307-521 (700)
243 KOG1820 Microtubule-associated 93.0 2.3 4.9E-05 46.9 14.3 189 292-520 254-445 (815)
244 PF11864 DUF3384: Domain of un 92.6 15 0.00032 38.4 26.5 260 74-361 40-329 (464)
245 smart00512 Skp1 Found in Skp1 92.1 0.49 1.1E-05 37.7 6.1 53 557-610 10-63 (104)
246 KOG1525 Sister chromatid cohes 92.1 29 0.00063 40.5 23.8 149 332-519 258-406 (1266)
247 PF10363 DUF2435: Protein of u 91.8 0.69 1.5E-05 35.7 6.3 71 210-282 6-76 (92)
248 PF12031 DUF3518: Domain of un 91.8 0.17 3.6E-06 45.9 3.3 88 389-502 139-229 (257)
249 PF12530 DUF3730: Protein of u 91.7 11 0.00025 35.1 17.6 137 210-362 3-151 (234)
250 KOG2933 Uncharacterized conser 91.6 1.6 3.4E-05 41.3 9.5 139 251-401 90-232 (334)
251 KOG0511 Ankyrin repeat protein 91.5 0.069 1.5E-06 51.0 0.7 60 550-611 150-210 (516)
252 PF11707 Npa1: Ribosome 60S bi 91.5 16 0.00034 36.2 20.2 165 251-415 58-249 (330)
253 COG5218 YCG1 Chromosome conden 91.4 20 0.00043 37.3 19.5 114 93-236 82-196 (885)
254 PF08506 Cse1: Cse1; InterPro 90.8 20 0.00042 36.1 20.3 150 285-472 204-370 (370)
255 PF10363 DUF2435: Protein of u 90.7 0.55 1.2E-05 36.2 4.8 71 449-520 4-74 (92)
256 KOG3665 ZYG-1-like serine/thre 90.6 8.4 0.00018 42.3 15.4 176 188-383 494-676 (699)
257 PF01347 Vitellogenin_N: Lipop 90.6 13 0.00028 40.7 17.4 201 105-356 396-616 (618)
258 KOG2714 SETA binding protein S 90.1 0.9 2E-05 44.7 6.7 64 552-616 13-80 (465)
259 PF08506 Cse1: Cse1; InterPro 90.0 23 0.0005 35.6 22.6 315 53-398 27-370 (370)
260 COG5218 YCG1 Chromosome conden 89.9 28 0.0006 36.4 19.2 102 206-313 90-192 (885)
261 PF06371 Drf_GBD: Diaphanous G 89.7 2.8 6.2E-05 37.5 9.5 79 198-277 98-186 (187)
262 COG5209 RCD1 Uncharacterized p 89.4 5.3 0.00011 35.9 10.3 146 134-284 118-273 (315)
263 PF14500 MMS19_N: Dos2-interac 89.4 14 0.00031 35.0 14.2 218 253-477 3-237 (262)
264 PF11865 DUF3385: Domain of un 89.0 4.4 9.6E-05 35.1 9.7 145 60-235 9-156 (160)
265 PF08167 RIX1: rRNA processing 88.2 2 4.3E-05 37.5 7.1 116 333-477 25-143 (165)
266 PF01347 Vitellogenin_N: Lipop 88.1 15 0.00031 40.3 15.4 159 293-510 433-614 (618)
267 PF11707 Npa1: Ribosome 60S bi 87.3 32 0.0007 34.0 22.2 158 209-366 58-241 (330)
268 PF08324 PUL: PUL domain; Int 87.1 8.4 0.00018 36.9 11.5 148 131-283 78-236 (268)
269 KOG1949 Uncharacterized conser 87.0 34 0.00073 36.6 15.7 189 210-404 177-371 (1005)
270 KOG1788 Uncharacterized conser 86.7 17 0.00038 40.5 13.9 252 137-402 663-981 (2799)
271 KOG2933 Uncharacterized conser 86.5 5.3 0.00011 37.9 9.0 140 293-476 90-233 (334)
272 smart00638 LPD_N Lipoprotein N 86.4 53 0.0011 35.6 20.0 163 158-354 394-570 (574)
273 PF13251 DUF4042: Domain of un 85.9 17 0.00036 32.2 11.4 113 210-322 43-176 (182)
274 PF13251 DUF4042: Domain of un 85.5 26 0.00055 31.1 13.3 156 349-519 2-175 (182)
275 PF11865 DUF3385: Domain of un 85.5 6.3 0.00014 34.2 8.6 145 249-402 10-156 (160)
276 COG5656 SXM1 Importin, protein 85.5 59 0.0013 35.2 21.0 121 156-280 407-530 (970)
277 PF12031 DUF3518: Domain of un 84.6 5.4 0.00012 36.5 7.8 63 348-410 139-209 (257)
278 smart00638 LPD_N Lipoprotein N 84.2 30 0.00066 37.4 15.2 132 334-515 394-542 (574)
279 COG5098 Chromosome condensatio 83.7 9.2 0.0002 40.5 10.0 146 248-407 891-1041(1128)
280 KOG2611 Neurochondrin/leucine- 83.5 56 0.0012 33.4 18.2 191 79-278 27-225 (698)
281 KOG0301 Phospholipase A2-activ 83.4 43 0.00092 35.6 14.5 165 215-385 552-727 (745)
282 KOG1410 Nuclear transport rece 82.7 72 0.0016 34.1 16.0 132 130-278 20-157 (1082)
283 KOG1949 Uncharacterized conser 82.7 75 0.0016 34.2 18.4 163 245-411 125-300 (1005)
284 PF11864 DUF3384: Domain of un 82.5 68 0.0015 33.6 22.1 91 306-403 230-330 (464)
285 KOG2611 Neurochondrin/leucine- 82.1 63 0.0014 33.0 19.3 136 252-388 14-166 (698)
286 PF08324 PUL: PUL domain; Int 82.1 12 0.00025 35.9 9.9 149 80-238 80-233 (268)
287 KOG1987 Speckle-type POZ prote 81.7 0.3 6.6E-06 47.7 -1.2 55 558-612 109-163 (297)
288 KOG1992 Nuclear export recepto 81.0 93 0.002 34.2 21.0 190 79-278 309-527 (960)
289 PF08167 RIX1: rRNA processing 80.5 19 0.00041 31.4 9.8 108 292-403 26-143 (165)
290 PF14500 MMS19_N: Dos2-interac 80.2 55 0.0012 31.1 18.2 209 131-363 14-238 (262)
291 KOG1992 Nuclear export recepto 79.6 1E+02 0.0022 33.9 23.5 238 222-476 262-526 (960)
292 PRK09169 hypothetical protein; 78.7 1.8E+02 0.004 36.3 25.4 15 346-360 413-427 (2316)
293 cd03561 VHS VHS domain family; 77.5 36 0.00079 28.4 10.2 72 208-279 38-113 (133)
294 cd03569 VHS_Hrs_Vps27p VHS dom 77.3 35 0.00077 28.8 10.1 72 207-278 41-114 (142)
295 KOG0413 Uncharacterized conser 75.7 20 0.00044 39.6 9.7 128 129-279 944-1074(1529)
296 cd03568 VHS_STAM VHS domain fa 75.4 23 0.00049 30.1 8.4 72 208-279 38-111 (144)
297 KOG0392 SNF2 family DNA-depend 75.1 79 0.0017 36.6 14.2 179 180-364 144-327 (1549)
298 cd03568 VHS_STAM VHS domain fa 74.4 8.6 0.00019 32.6 5.6 74 448-521 37-113 (144)
299 KOG1848 Uncharacterized conser 74.2 1.1E+02 0.0023 35.9 15.0 93 180-277 857-957 (1610)
300 PF10521 DUF2454: Protein of u 73.6 36 0.00077 32.9 10.4 70 208-277 120-202 (282)
301 PF12231 Rif1_N: Rap1-interact 72.4 1.1E+02 0.0025 30.8 19.2 259 128-402 58-351 (372)
302 PF14726 RTTN_N: Rotatin, an a 71.9 27 0.0006 27.2 7.3 68 331-398 28-95 (98)
303 cd03567 VHS_GGA VHS domain fam 71.3 62 0.0013 27.3 10.2 97 173-278 13-116 (139)
304 PF12231 Rif1_N: Rap1-interact 70.8 1.2E+02 0.0027 30.6 22.0 290 52-361 30-351 (372)
305 PF08216 CTNNBL: Catenin-beta- 70.7 18 0.00039 28.6 6.1 42 467-508 65-106 (108)
306 PF10521 DUF2454: Protein of u 70.5 43 0.00093 32.3 10.2 51 249-299 119-170 (282)
307 KOG0301 Phospholipase A2-activ 69.6 1.6E+02 0.0035 31.6 14.2 157 180-344 559-727 (745)
308 KOG1822 Uncharacterized conser 69.4 2.8E+02 0.006 34.1 19.5 249 251-519 878-1128(2067)
309 PF13001 Ecm29: Proteasome sta 69.3 1.1E+02 0.0023 32.5 13.6 176 131-320 252-443 (501)
310 cd08050 TAF6 TATA Binding Prot 68.7 45 0.00099 33.2 10.1 109 292-401 211-338 (343)
311 KOG2011 Sister chromatid cohes 67.8 2.3E+02 0.005 32.6 19.7 136 259-402 297-434 (1048)
312 PLN03076 ARF guanine nucleotid 67.4 1.4E+02 0.0031 36.8 15.2 132 131-276 1152-1297(1780)
313 KOG0392 SNF2 family DNA-depend 67.3 64 0.0014 37.2 11.5 96 263-363 143-238 (1549)
314 PF14631 FancD2: Fanconi anaem 66.8 3E+02 0.0065 33.5 21.3 69 333-404 431-503 (1426)
315 PF01603 B56: Protein phosphat 66.7 1.6E+02 0.0034 30.3 13.8 232 100-362 129-370 (409)
316 PF12054 DUF3535: Domain of un 66.4 1.4E+02 0.003 31.0 13.4 110 221-334 101-211 (441)
317 PF04869 Uso1_p115_head: Uso1 66.1 1.4E+02 0.003 29.3 15.1 140 179-318 52-229 (312)
318 PF10274 ParcG: Parkin co-regu 65.9 92 0.002 27.6 10.2 80 249-328 38-117 (183)
319 KOG0891 DNA-dependent protein 65.6 2.3E+02 0.005 36.1 16.6 267 212-518 486-763 (2341)
320 PF08216 CTNNBL: Catenin-beta- 65.0 9.9 0.00022 30.0 3.7 39 80-118 63-101 (108)
321 PF01365 RYDR_ITPR: RIH domain 63.1 30 0.00066 31.5 7.3 126 148-278 34-169 (207)
322 KOG2676 Uncharacterized conser 62.7 11 0.00025 36.4 4.3 64 184-247 375-440 (478)
323 smart00288 VHS Domain present 62.6 60 0.0013 27.1 8.3 71 208-278 38-111 (133)
324 PF10274 ParcG: Parkin co-regu 61.3 1.2E+02 0.0026 26.9 10.0 77 157-241 38-114 (183)
325 PF01603 B56: Protein phosphat 60.8 2E+02 0.0044 29.5 15.7 217 176-399 101-322 (409)
326 PF12830 Nipped-B_C: Sister ch 60.5 1.3E+02 0.0027 26.9 14.1 71 208-283 9-79 (187)
327 cd03561 VHS VHS domain family; 59.5 1E+02 0.0022 25.6 10.0 73 292-364 38-114 (133)
328 PF14726 RTTN_N: Rotatin, an a 58.9 85 0.0019 24.5 7.9 67 205-272 28-94 (98)
329 cd03569 VHS_Hrs_Vps27p VHS dom 58.9 43 0.00092 28.4 6.8 72 292-363 42-115 (142)
330 PF13001 Ecm29: Proteasome sta 58.7 1.4E+02 0.0031 31.6 12.2 169 180-363 252-444 (501)
331 KOG0891 DNA-dependent protein 58.6 5.1E+02 0.011 33.3 20.0 160 244-405 560-721 (2341)
332 KOG1525 Sister chromatid cohes 58.2 3.9E+02 0.0084 31.9 19.3 73 290-363 258-330 (1266)
333 KOG0413 Uncharacterized conser 56.8 69 0.0015 35.8 9.2 125 263-402 945-1072(1529)
334 cd03567 VHS_GGA VHS domain fam 56.7 31 0.00068 29.0 5.6 71 334-404 39-117 (139)
335 PF00790 VHS: VHS domain; Int 56.6 1E+02 0.0023 25.9 8.9 72 208-279 43-119 (140)
336 KOG1724 SCF ubiquitin ligase, 56.4 26 0.00056 30.3 5.1 53 557-610 13-65 (162)
337 PF12074 DUF3554: Domain of un 56.0 2.2E+02 0.0047 28.3 13.3 79 261-343 174-254 (339)
338 KOG1848 Uncharacterized conser 55.8 3.4E+02 0.0073 32.2 14.5 101 131-236 857-958 (1610)
339 KOG1665 AFH1-interacting prote 54.8 23 0.0005 31.8 4.5 66 550-616 9-79 (302)
340 PRK09169 hypothetical protein; 54.4 5.6E+02 0.012 32.5 25.7 15 262-276 371-385 (2316)
341 PF03130 HEAT_PBS: PBS lyase H 53.0 23 0.0005 19.9 2.9 26 132-167 1-26 (27)
342 PF06685 DUF1186: Protein of u 52.4 2.1E+02 0.0045 27.0 13.3 119 55-204 29-152 (249)
343 PF12463 DUF3689: Protein of u 52.4 2.3E+02 0.005 27.5 13.0 104 222-325 47-178 (303)
344 KOG2549 Transcription initiati 51.0 2.6E+02 0.0056 29.4 11.7 117 158-276 240-368 (576)
345 PF01365 RYDR_ITPR: RIH domain 51.0 40 0.00087 30.7 5.9 80 221-303 75-154 (207)
346 PF12726 SEN1_N: SEN1 N termin 50.5 2.2E+02 0.0047 32.0 12.6 139 212-362 446-585 (727)
347 KOG2676 Uncharacterized conser 49.6 23 0.0005 34.4 4.0 62 227-288 376-439 (478)
348 PF12830 Nipped-B_C: Sister ch 49.4 1.9E+02 0.0042 25.7 13.7 143 158-319 9-166 (187)
349 PF12074 DUF3554: Domain of un 49.2 2.8E+02 0.006 27.5 13.5 212 131-363 2-236 (339)
350 KOG2011 Sister chromatid cohes 48.7 4.9E+02 0.011 30.2 18.0 136 343-516 297-433 (1048)
351 KOG2549 Transcription initiati 47.2 2.3E+02 0.0049 29.8 10.7 140 252-402 210-369 (576)
352 PF04388 Hamartin: Hamartin pr 46.6 4.2E+02 0.0091 29.3 13.6 138 104-281 4-143 (668)
353 smart00288 VHS Domain present 46.6 97 0.0021 25.8 7.0 71 106-194 39-111 (133)
354 KOG1822 Uncharacterized conser 46.1 6.8E+02 0.015 31.1 20.2 186 125-322 793-990 (2067)
355 smart00567 EZ_HEAT E-Z type HE 44.0 38 0.00083 19.3 3.0 14 131-144 2-15 (30)
356 PF11791 Aconitase_B_N: Aconit 41.9 51 0.0011 27.9 4.5 44 307-361 79-122 (154)
357 KOG2715 Uncharacterized conser 41.6 55 0.0012 28.0 4.6 72 546-617 17-92 (210)
358 PF06685 DUF1186: Protein of u 41.4 3.1E+02 0.0067 25.8 12.2 76 291-370 73-151 (249)
359 KOG4231 Intracellular membrane 40.3 32 0.0007 35.1 3.6 68 210-277 331-398 (763)
360 PF00790 VHS: VHS domain; Int 39.5 78 0.0017 26.6 5.5 70 250-319 43-117 (140)
361 PF06012 DUF908: Domain of Unk 38.9 1.5E+02 0.0032 29.4 8.1 66 131-201 237-304 (329)
362 PF07571 DUF1546: Protein of u 38.5 61 0.0013 25.0 4.3 59 128-192 18-76 (92)
363 cd08050 TAF6 TATA Binding Prot 38.3 70 0.0015 31.9 5.7 126 57-192 210-338 (343)
364 PF14225 MOR2-PAG1_C: Cell mor 38.0 3.6E+02 0.0079 25.6 19.6 172 209-401 66-252 (262)
365 KOG4524 Uncharacterized conser 37.8 2.3E+02 0.005 32.0 9.6 84 74-170 814-902 (1014)
366 PF08389 Xpo1: Exportin 1-like 37.6 1.7E+02 0.0036 24.5 7.5 142 348-513 3-148 (148)
367 PF04388 Hamartin: Hamartin pr 36.6 5.1E+02 0.011 28.7 12.3 135 207-362 4-140 (668)
368 KOG3840 Uncharaterized conserv 36.5 58 0.0012 30.9 4.4 65 552-616 98-167 (438)
369 PF12765 Cohesin_HEAT: HEAT re 35.9 40 0.00086 21.5 2.4 25 333-357 18-42 (42)
370 PF14225 MOR2-PAG1_C: Cell mor 35.6 4E+02 0.0086 25.4 19.6 69 446-518 186-254 (262)
371 cd03572 ENTH_epsin_related ENT 35.2 2.5E+02 0.0055 23.0 7.5 40 105-156 39-80 (122)
372 PF04821 TIMELESS: Timeless pr 35.2 4E+02 0.0088 25.4 13.2 35 245-279 174-209 (266)
373 PF04869 Uso1_p115_head: Uso1 33.7 4.7E+02 0.01 25.7 15.0 143 220-362 51-231 (312)
374 PF11791 Aconitase_B_N: Aconit 33.0 87 0.0019 26.6 4.5 27 293-319 96-122 (154)
375 PF07571 DUF1546: Protein of u 32.5 1.1E+02 0.0024 23.5 4.8 58 344-401 17-76 (92)
376 PLN03205 ATR interacting prote 32.0 5.4E+02 0.012 25.9 11.7 143 344-499 383-545 (652)
377 PF12054 DUF3535: Domain of un 31.8 6.1E+02 0.013 26.4 16.7 77 306-386 102-180 (441)
378 PLN03076 ARF guanine nucleotid 30.5 1.2E+03 0.026 29.4 22.4 94 180-278 1152-1253(1780)
379 PF14663 RasGEF_N_2: Rapamycin 29.7 80 0.0017 25.5 3.8 39 375-413 9-47 (115)
380 KOG2199 Signal transducing ada 29.5 1.3E+02 0.0029 29.9 5.7 92 448-546 45-139 (462)
381 PF04821 TIMELESS: Timeless pr 29.4 5E+02 0.011 24.7 9.8 77 387-479 133-210 (266)
382 PF06012 DUF908: Domain of Unk 29.2 2.3E+02 0.0049 28.1 7.6 58 79-145 238-297 (329)
383 PF09324 DUF1981: Domain of un 28.9 1.6E+02 0.0034 22.3 5.1 65 445-513 14-83 (86)
384 KOG4231 Intracellular membrane 28.9 31 0.00067 35.3 1.5 72 291-362 328-399 (763)
385 PF12726 SEN1_N: SEN1 N termin 28.9 8.7E+02 0.019 27.3 17.5 109 252-362 444-553 (727)
386 cd03572 ENTH_epsin_related ENT 28.0 3.4E+02 0.0074 22.3 9.3 69 334-402 39-118 (122)
387 PF09324 DUF1981: Domain of un 27.4 1.2E+02 0.0027 22.9 4.3 65 331-399 15-84 (86)
388 KOG4524 Uncharacterized conser 26.4 2.4E+02 0.0052 31.9 7.5 96 207-302 803-900 (1014)
389 PF08389 Xpo1: Exportin 1-like 26.1 2.9E+02 0.0064 22.9 7.1 71 55-140 76-148 (148)
390 KOG2005 26S proteasome regulat 25.9 9E+02 0.019 26.4 14.8 75 448-525 675-750 (878)
391 PF11229 DUF3028: Protein of u 25.8 8E+02 0.017 25.8 15.2 148 209-363 200-354 (589)
392 PF12783 Sec7_N: Guanine nucle 25.5 1.5E+02 0.0033 25.8 5.2 81 329-411 69-154 (168)
393 PF14666 RICTOR_M: Rapamycin-i 25.4 5.5E+02 0.012 23.8 13.1 140 78-236 79-225 (226)
394 KOG2149 Uncharacterized conser 25.3 6.8E+02 0.015 25.3 9.8 113 209-322 60-172 (393)
395 PF14663 RasGEF_N_2: Rapamycin 25.2 2E+02 0.0044 23.2 5.4 39 249-288 8-46 (115)
396 smart00549 TAFH TAF homology. 25.2 3.2E+02 0.0069 21.0 6.2 71 375-471 8-79 (92)
397 KOG2229 Protein required for a 24.9 3.8E+02 0.0083 27.9 8.1 137 250-398 17-161 (616)
398 KOG1993 Nuclear transport rece 24.6 1E+03 0.022 26.7 18.4 251 53-325 563-817 (978)
399 KOG2149 Uncharacterized conser 24.5 7.1E+02 0.015 25.2 9.7 112 251-363 60-171 (393)
400 cd03565 VHS_Tom1 VHS domain fa 24.0 4.4E+02 0.0095 22.2 10.1 97 174-279 14-116 (141)
401 PF04499 SAPS: SIT4 phosphatas 23.7 4.3E+02 0.0094 27.8 8.8 40 148-194 53-92 (475)
402 PF12463 DUF3689: Protein of u 23.7 6.9E+02 0.015 24.4 17.6 138 97-240 2-177 (303)
403 PF11822 DUF3342: Domain of un 22.7 2.3E+02 0.0051 27.6 6.0 59 559-617 14-74 (317)
404 cd00197 VHS_ENTH_ANTH VHS, ENT 22.7 3.5E+02 0.0076 21.6 6.5 71 208-278 38-115 (115)
405 KOG2152 Sister chromatid cohes 22.5 1.1E+03 0.023 26.2 21.7 40 79-118 350-389 (865)
406 PF03378 CAS_CSE1: CAS/CSE pro 22.4 6.9E+02 0.015 25.9 9.9 36 204-239 114-149 (435)
407 cd03565 VHS_Tom1 VHS domain fa 22.1 4.8E+02 0.01 22.0 7.9 71 334-404 39-116 (141)
408 PF07923 N1221: N1221-like pro 21.4 86 0.0019 30.4 3.0 54 446-499 58-126 (293)
409 KOG1791 Uncharacterized conser 21.0 1.6E+03 0.034 27.5 14.0 115 247-362 1538-1660(1758)
410 KOG2073 SAP family cell cycle 20.6 1.2E+03 0.026 26.6 11.6 44 262-305 335-379 (838)
411 PF08713 DNA_alkylation: DNA a 20.6 1.7E+02 0.0037 26.6 4.7 82 209-297 122-205 (213)
412 COG5537 IRR1 Cohesin [Cell div 20.5 9.9E+02 0.022 25.7 10.2 142 252-402 278-421 (740)
413 KOG2199 Signal transducing ada 20.2 3.6E+02 0.0079 27.0 6.7 71 249-319 45-117 (462)
414 KOG1993 Nuclear transport rece 20.2 1.3E+03 0.027 26.0 20.3 118 157-284 699-818 (978)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=352.31 Aligned_cols=447 Identities=21% Similarity=0.212 Sum_probs=366.4
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007101 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.++.++.+|.+. ++..|..|+++|.+++. +++.+..+++.|+||.|+++|.+++. +.+|+.|
T Consensus 190 aVp~LV~LLsS~------d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE~A 252 (2102)
T PLN03200 190 GVDILVKLLSSG------NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRAEA 252 (2102)
T ss_pred CHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHHHH
Confidence 567777777654 56789999999998887 57899999999999999999986543 2899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCC-cccchHHHHHHHHHHHHhhhcCch-----------h----
Q 007101 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSS-----------I---- 199 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~L~~~~~~-----------~---- 199 (618)
+|+|.+|+ ++++++..+++.|+++.|++++........ ......++++++|+|.|+|.+.+. .
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHH
Confidence 99999999 789999999999999999999985442110 001126788899999988873111 0
Q ss_pred ----------------------------------------------------------------hHHHHhcCChHHHHHh
Q 007101 200 ----------------------------------------------------------------KTRVRMEGGIPPLVEL 215 (618)
Q Consensus 200 ----------------------------------------------------------------~~~~~~~~~i~~L~~l 215 (618)
+..+...++++.|+.+
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L 412 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL 412 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence 0011223445556666
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007101 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+...+.+++..++++|++++.++++.++.+.+.|+++.|+++|.+++..++..|+++|++++.++++++..+++.|++|.
T Consensus 413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 66667889999999999999888889999999999999999999999999999999999999988888899999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc--------
Q 007101 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-------- 367 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------- 367 (618)
|+++|.+++.+++++|+|+|+|++..++..+..+.+.|+++.|+++|++++++++..++++|.|++.+.+..
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L 572 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTAL 572 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999999999999999999999999876666666778899999999999999999999999999997432211
Q ss_pred ------------------------------hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC-CcchhHHHhhcc
Q 007101 368 ------------------------------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGG 416 (618)
Q Consensus 368 ------------------------------~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~ 416 (618)
......++++.|.+++.+++..+++.|+++|.+++.+ .+....++..|+
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 0011357999999999999999999999999999855 556788999999
Q ss_pred cccccccchhh----h-hHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCcccccee
Q 007101 417 VQKLQDGEFIV----Q-ATKDCVAKTL-----KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486 (618)
Q Consensus 417 ~~~L~~~~~~~----~-~~~~~~~~~~-----~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 486 (618)
+++++...... . ....++.+.. .+.....+.+++++|+.+|++++..++..++.+|.+++...+.+..+.
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 99987743321 1 1111222211 222334688999999999999999999999999999999999888888
Q ss_pred cCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 487 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 487 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
..|+++.|++++++++++.|+.|+++|.+|+++.+
T Consensus 733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999998765
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=338.61 Aligned_cols=440 Identities=21% Similarity=0.219 Sum_probs=351.2
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhH-HHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHH
Q 007101 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (618)
Q Consensus 56 ~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (618)
...++.++..+... ...|..++..++.+|.+++...++. ..+++.|+||.|+.+|.+++. .++.
T Consensus 143 ~GaVp~Lv~lL~~g---sk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~------------~lQ~ 207 (2102)
T PLN03200 143 EGVVPSLWDQLQPG---NKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNS------------DAQA 207 (2102)
T ss_pred cCChHHHHHHHhCC---chhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCH------------HHHH
Confidence 34567788887765 2345556778889999999965554 567899999999999988665 9999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHH
Q 007101 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (618)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (618)
.|+++|.+++ ..++.+..+++.|++|.|+.+|++.++. .+++.|+++|.||+.++++.+..+.+.|+++.|+
T Consensus 208 eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~-------~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI 280 (2102)
T PLN03200 208 NAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV-------SVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280 (2102)
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh-------HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Confidence 9999999998 6688999999999999999999875432 8899999999999999999999999999999999
Q ss_pred HhhcCCC---------HHHHHHHHHHHHHhhcCCcc-----------c--------------------------------
Q 007101 214 ELLEFTD---------TKVQRAAAGALRTLAFKNDE-----------N-------------------------------- 241 (618)
Q Consensus 214 ~ll~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~-------------------------------- 241 (618)
+++.+++ ..+++.+.|+|.|+|.+... .
T Consensus 281 ~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~ 360 (2102)
T PLN03200 281 NATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDP 360 (2102)
T ss_pred HHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccc
Confidence 9997654 34689999999998863111 0
Q ss_pred ------------------------------------HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007101 242 ------------------------------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 242 ------------------------------------~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
+..+.+.++++.|+.++...+.+++..++++|++++.++.+.++
T Consensus 361 ~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~ 440 (2102)
T PLN03200 361 TVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWE 440 (2102)
T ss_pred cccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 00011224445555666666678999999999999999889999
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 007101 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 365 (618)
.+...|+++.|+++|.+++...++.+++++++++.++++.+..+.+.|++|.|+++|.+++..+++.|+|+|+|++.+.+
T Consensus 441 aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999998765
Q ss_pred cchh-hHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccch-hhhhHHHHHHHHHH----
Q 007101 366 NQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLK---- 439 (618)
Q Consensus 366 ~~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~-~~~~~~~~~~~~~~---- 439 (618)
+... +...|++++|++++.+++++++..|+++|.+|+.+.++... ...+..|..... ......+.+...+.
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I---~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~ 597 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI---SQLTALLLGDLPESKVHVLDVLGHVLSVASL 597 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH---HHHHHHhcCCChhHHHHHHHHHHHHHhhcch
Confidence 5555 44779999999999999999999999999999865443211 111111211111 11111111111111
Q ss_pred -H--HHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc-cccceecCCchHHHHHHhcCCChhhhhhHHHHHHH
Q 007101 440 -R--LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (618)
Q Consensus 440 -~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 515 (618)
. .......+.++.|+.+++++++.++..|+++|.+++.+.. .+..+...|++++|+.++.+++.+++..|+|+|.+
T Consensus 598 ~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 598 EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 0 0111246899999999999999999999999999986554 56678899999999999999999999999999999
Q ss_pred hhhhh
Q 007101 516 LANKA 520 (618)
Q Consensus 516 L~~~~ 520 (618)
++...
T Consensus 678 L~~~~ 682 (2102)
T PLN03200 678 LSRSI 682 (2102)
T ss_pred HHhCC
Confidence 99643
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-37 Score=298.61 Aligned_cols=364 Identities=23% Similarity=0.331 Sum_probs=314.1
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007101 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.++.+|+.|... .++.+|++|+|+|.|+++ +.+..+.+++.|++|.|+.++.+++. .|+++|
T Consensus 110 ~v~~lV~~l~~~-----~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~eQa 172 (514)
T KOG0166|consen 110 VVPRLVEFLSRD-----DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVREQA 172 (514)
T ss_pred cHHHHHHHHccC-----CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHHHH
Confidence 556777777643 246689999999999999 78888999999999999999999998 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007101 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
.|+|+|++ +++.+|+.++.+|+++.|+.++.....- .+.+.++|+|.|||.+..+....-....++|.|..+
T Consensus 173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l 245 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL 245 (514)
T ss_pred HHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999988652 789999999999998764433333345789999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007101 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+.+.|+++...|+|++++|+.+.++..+.+++.|+++.|+.+|.+.+..++..|+++++|++.+++...+.++..|+++.
T Consensus 246 l~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 246 LHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPV 325 (514)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-c-hhhHh
Q 007101 296 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-Q-AGIAH 372 (618)
Q Consensus 296 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~-~~l~~ 372 (618)
|..++. +....++++|+|+++|++.++....+.+++.|++|.|+.+|+..+.++|.+|+|+++|++.+... + ..+++
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~ 405 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE 405 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 999999 45566899999999999999999999999999999999999999999999999999999985543 3 45889
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcc---------hhHHHhhcccccccccchhhhhHHHHHHHHHHHHHH
Q 007101 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN---------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (618)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 443 (618)
.|.+++|..+|.-.+..+...++.+|.||-...+. ...+-+.|+
T Consensus 406 ~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~gg--------------------------- 458 (514)
T KOG0166|consen 406 QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGG--------------------------- 458 (514)
T ss_pred cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccC---------------------------
Confidence 99999999999889999999999999999633221 122223333
Q ss_pred HHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC
Q 007101 444 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (618)
Q Consensus 444 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 478 (618)
+..+-.+=.+.+.++...|..++...-..
T Consensus 459 ------ldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 459 ------LDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred ------hhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 33344444555778888888888877543
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-36 Score=294.94 Aligned_cols=402 Identities=19% Similarity=0.289 Sum_probs=338.2
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhccC--hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007101 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.+.++..+.+. ++..+.++...++.+.+. ......++..|+||.||..|...+. |.++..|
T Consensus 68 ~~~~~~~~~S~------~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~-----------~~lq~eA 130 (514)
T KOG0166|consen 68 LELMLAALYSD------DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDN-----------PTLQFEA 130 (514)
T ss_pred hHHHHHHHhCC------CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCC-----------hhHHHHH
Confidence 45555555554 455688888888887662 2344556666999999999986654 3999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007101 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
+|+|.|++ .+.+....+++.|++|.++.++.+.+. +++++|+|+|+|++.+.+..|..+...|++++|+.+
T Consensus 131 AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~ 202 (514)
T KOG0166|consen 131 AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL 202 (514)
T ss_pred HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--------HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH
Confidence 99999999 888888999999999999999999987 999999999999999999999999999999999999
Q ss_pred hcCCCH-HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHH
Q 007101 216 LEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (618)
Q Consensus 216 l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (618)
+..++. ...+.+.|+|.|+|.+....-..-.-..+++.|..++.+.|++|...|+|+|++|+.+..+..+.+++.|+++
T Consensus 203 l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~ 282 (514)
T KOG0166|consen 203 LNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP 282 (514)
T ss_pred hccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence 988775 7889999999999997532222222245799999999999999999999999999999889899999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCcc-hhhHh
Q 007101 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQ-AGIAH 372 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~ 372 (618)
.|+.+|.+++..++..|+++++|++.+++.....+++.|+++.|..++. ++...++.+|||++.|++.+...+ ..+++
T Consensus 283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid 362 (514)
T KOG0166|consen 283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID 362 (514)
T ss_pred HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 566779999999999999977655 56888
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC--cchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhH
Q 007101 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (618)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (618)
.+.++.|+.++++.+..+|..|+|++.|++.+. +....+ ++.+++
T Consensus 363 a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yL---------------------------------v~~giI 409 (514)
T KOG0166|consen 363 ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYL---------------------------------VEQGII 409 (514)
T ss_pred cccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHH---------------------------------HHcCCc
Confidence 899999999999999999999999999998553 232333 344577
Q ss_pred HHHHHHHhhCCHhHHHHHHHHHHhhcCC---------CccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhh
Q 007101 451 NHLLYLMRVAEKGVQRRVALALAHLCSP---------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~---------~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (618)
+++..+|...+..+...++-+|.++-.. ......+-+.||+..+-.+-.+.+.++-..|...+..--.
T Consensus 410 ~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 410 KPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred hhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 7788899888888888888888887421 1223455678999999999999998988877777765433
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.5e-36 Score=270.64 Aligned_cols=376 Identities=19% Similarity=0.262 Sum_probs=313.3
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007101 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
.||++++++... +.+ -.+++|+|+|.|+++ +....+.++++|+||.++++|.+++. +|++++
T Consensus 115 vVpRfvefm~~~----q~~-mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~eQa 177 (526)
T COG5064 115 VVPRFVEFMDEI----QRD-MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVREQA 177 (526)
T ss_pred ccHHHHHHHHhc----chh-HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHHHHH
Confidence 678899998654 123 379999999999999 56677788899999999999999888 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007101 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
.|+|+|++ +++.+|+.+.++|++..++.++.++... ..+.+.+.|+|.|||.+..+....-.....+|.|..+
T Consensus 178 vWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~------ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 178 VWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH------ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch------HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHH
Confidence 99999999 8999999999999999999999976543 3889999999999998655444444445689999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH
Q 007101 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 295 (618)
+.+.|+++...|+|++..|+.+..+..+.+++.|+.+.|+.+|.+++..++..|++.++|+..+++...+.++..|+++.
T Consensus 252 iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a 331 (526)
T COG5064 252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKA 331 (526)
T ss_pred HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHH
Confidence 99999999999999999999988888889999999999999999999999999999999999999999899999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc----hhhH
Q 007101 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ----AGIA 371 (618)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~l~ 371 (618)
+..+|+++...+++++||+++|++.++.+..+.+++.+++|.|+.+|...+..++..|||++.|...+.-++ ..++
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv 411 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLV 411 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHH
Confidence 999999998999999999999999999999999999999999999999999999999999999999876554 3478
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHH
Q 007101 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 451 (618)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 451 (618)
..|.+.+|..+|.-.+..+.+.++.++.|+...-+.-......+ +. ..-..+-..+.+.
T Consensus 412 ~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~n-in--------------------~ya~~vE~Aggmd 470 (526)
T COG5064 412 SQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKN-IN--------------------IYAVYVEKAGGMD 470 (526)
T ss_pred HccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCC-cc--------------------HHHHHHHhcccHH
Confidence 88999999999998888888888999998864321111000000 00 0000011245566
Q ss_pred HHHHHHhhCCHhHHHHHHHHHHhhcC
Q 007101 452 HLLYLMRVAEKGVQRRVALALAHLCS 477 (618)
Q Consensus 452 ~L~~ll~~~~~~v~~~a~~~L~~l~~ 477 (618)
.+-.+-.+.+..+-..|-.++-.+-.
T Consensus 471 ~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 471 AIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHcc
Confidence 66666666677777777777766643
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.2e-35 Score=264.39 Aligned_cols=412 Identities=21% Similarity=0.283 Sum_probs=339.9
Q ss_pred hhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc--ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchh
Q 007101 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130 (618)
Q Consensus 53 ~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~ 130 (618)
+......|.+.+-|.+. |.+.|..|..-...+.+ +....+.++++|+||.+++++.....+
T Consensus 67 qq~~~elp~lt~~l~Sd------Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~----------- 129 (526)
T COG5064 67 QQFYSELPQLTQQLFSD------DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD----------- 129 (526)
T ss_pred HHhhhhhHHHHHHHhhh------HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh-----------
Confidence 34445566666666554 77788888888887765 555677899999999999999654441
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
..+..|+|+|.|++ ........+++.|++|.++.+|.+... +++++++|+|+|++.+++..|..+.+.|++
T Consensus 130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavWALGNiAGDS~~~RD~vL~~gal 201 (526)
T COG5064 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVWALGNIAGDSEGCRDYVLQCGAL 201 (526)
T ss_pred HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHHHhccccCCchhHHHHHHhcCch
Confidence 77889999999999 555555677899999999999999987 999999999999999999999999999999
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHhhcCCc-ccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHH
Q 007101 210 PPLVELLEFTD--TKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (618)
Q Consensus 210 ~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (618)
.+++.++.+.- ..+.+.+.|.|.|||.+.. ..-...+ +..+|.|.+++.+.++++...|+|+++.|+.+..+..+.
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~a 280 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQA 280 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHH
Confidence 99999998754 4888999999999998633 3222222 346999999999999999999999999999988888899
Q ss_pred HHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 007101 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 366 (618)
+++.|..+.|+++|.+.+..++..+++.++|+..++......+++.|+++.+..+|.++...+|..+||++.|++.+...
T Consensus 281 vld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnte 360 (526)
T COG5064 281 VLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTE 360 (526)
T ss_pred HHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHH
Confidence 99999999999999999999999999999999988888888899999999999999999899999999999999987766
Q ss_pred c-hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHH
Q 007101 367 Q-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (618)
Q Consensus 367 ~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (618)
+ ..+++.+.+|+|+.++.+.+..++..|||++.|.+.+--++..+++ ..+
T Consensus 361 qiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir-----------------------------yLv 411 (526)
T COG5064 361 QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR-----------------------------YLV 411 (526)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH-----------------------------HHH
Confidence 5 4578899999999999999999999999999999866544433322 234
Q ss_pred hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc-----------ccc-ceecCCchHHHHHHhcCCChhhhhhHHHHH
Q 007101 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-----------QRT-IFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (618)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-----------~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 513 (618)
+.|++.+|..+|...+..+-..++-++.|+....+ ... .+-+.||+..+-.+-.+.+..+-..|-..+
T Consensus 412 ~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsII 491 (526)
T COG5064 412 SQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSII 491 (526)
T ss_pred HccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHH
Confidence 66788888899988776666666777777643221 112 233479999999999999988888887777
Q ss_pred HHhhhh
Q 007101 514 FKLANK 519 (618)
Q Consensus 514 ~~L~~~ 519 (618)
...-..
T Consensus 492 e~fFge 497 (526)
T COG5064 492 EKFFGE 497 (526)
T ss_pred HHHccc
Confidence 665543
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-35 Score=268.91 Aligned_cols=375 Identities=27% Similarity=0.360 Sum_probs=339.0
Q ss_pred CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007101 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
.....+.+-++++.+. .++..+..+++|++.+.+++..++..+++..|+.-+..... +++
T Consensus 84 res~epvl~llqs~d~------------~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--------evq 143 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDK------------CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--------EVQ 143 (550)
T ss_pred hhhhhHHHHHHhCcch------------hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--------EEE
Confidence 3456677788888877 99999999999999888999999999999999887777666 889
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC
Q 007101 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (618)
..++.|++||+.- ..++..+...|++.++.++-++.+..+|+++.++|.+++. ..++++.++..|++|.|+.++++++
T Consensus 144 cnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d 221 (550)
T KOG4224|consen 144 CNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGD 221 (550)
T ss_pred eeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCC
Confidence 9999999999985 6778889999999999999999999999999999999996 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhcC--CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 007101 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~ 340 (618)
.++++.|+.++++++.+ ...++.+.+.+ +++.|+.++.+++++++..|..+|.|+++ +......+++.|.+|.+++
T Consensus 222 ~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 222 LDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred hhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHH
Confidence 99999999999999765 55677788777 99999999999999999999999999985 4777888999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCCh-hHHHHHHHHHHHhhc-CCcchhHHHhhcccc
Q 007101 341 MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLAD-NEDNVADFIRVGGVQ 418 (618)
Q Consensus 341 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~-~~~~~~~l~~~~~~~ 418 (618)
+|+++.-....+...++.|++-++-+...+.+.|++.+|+++|.-++. +++..|..+|+||+. +..++..++++|.+
T Consensus 300 Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi- 378 (550)
T KOG4224|consen 300 LLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAI- 378 (550)
T ss_pred HHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCch-
Confidence 999988888888899999999999898889999999999999988755 499999999999986 67888888877755
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHh
Q 007101 419 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 498 (618)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 498 (618)
+.+..++.+....+|.....++..++..+..+..+.+.|.++.|+.+.
T Consensus 379 --------------------------------~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t 426 (550)
T KOG4224|consen 379 --------------------------------PKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT 426 (550)
T ss_pred --------------------------------HHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc
Confidence 558889999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhhHHHHHHHhhhhhccCCcccCCCCCCC
Q 007101 499 GSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPT 534 (618)
Q Consensus 499 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 534 (618)
.+.+.+++-.|+.+|.|++.+...|..+...|.+|.
T Consensus 427 ~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~ 462 (550)
T KOG4224|consen 427 GSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV 462 (550)
T ss_pred CccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence 999999999999999999999988888877776654
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-34 Score=258.61 Aligned_cols=388 Identities=22% Similarity=0.266 Sum_probs=344.7
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHh
Q 007101 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (618)
++.+|..|...+.|++-+-+++..+++.+++..|+.-+..+.. ++|..+..++++|+.-.+++..+..
T Consensus 98 d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v------------evqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 98 DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV------------EVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc------------EEEeeehhhhhhhhccccchhhhhh
Confidence 7788999999999999999999999999999998887777776 8999999999999966889999999
Q ss_pred CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007101 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (618)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (618)
.|++..+.++-+..+. .+++++..+|.|+.. ..++++.+...|++|.|+.++++++..+|..++.++.+++
T Consensus 166 sGaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred ccchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence 9999999997666655 899999999999998 6778888999999999999999999999999999999999
Q ss_pred cCCcccHHHHHhcC--CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHH
Q 007101 236 FKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (618)
Q Consensus 236 ~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 313 (618)
- +...++.+.+.+ +++.|+.++.++++.++-.|.-+|++++++ .+....+.++|.+|.++++++++..........
T Consensus 237 V-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 237 V-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred h-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 6 677888888877 999999999999999999999999999776 556688999999999999999998888888889
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhc-CCCcchhhHhcCCHHHHHHhhcCCChhHH
Q 007101 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (618)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~-~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (618)
++.|++ -.|-+...+.+.|++.+|+.+|... +.+++.+|..+|+||+. ..++...+.+.|+++.+..++.+.+..+|
T Consensus 315 CIrnis-ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 315 CIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred HHhhcc-cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHH
Confidence 999997 4477777888999999999999975 55699999999999987 66788899999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHH
Q 007101 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 471 (618)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 471 (618)
...-.++..|+.++..+..+.+.|.++. |+++..+.+.+++-+++.+
T Consensus 394 seisac~a~Lal~d~~k~~lld~gi~~i---------------------------------LIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 394 SEISACIAQLALNDNDKEALLDSGIIPI---------------------------------LIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred HHHHHHHHHHHhccccHHHHhhcCCcce---------------------------------eecccCccchhhcccHHHH
Confidence 9999999999999999888888876554 6778888999999999999
Q ss_pred HHhhcCCCccccceec------CCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 472 LAHLCSPDDQRTIFID------GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 472 L~~l~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
|.|++.+.++...+++ .|.-..|++++.+....++..+.|++.+|.+..
T Consensus 441 L~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 441 LINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999988775543333 344557889999999999999999999999873
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=2.4e-23 Score=216.59 Aligned_cols=378 Identities=19% Similarity=0.223 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 007101 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (618)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~ 158 (618)
....+...|.|++.++.....|.+.|+|+.|+++|...+. ++...+...|.+|+...+++..+.+.|+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~------------ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE------------ELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4557788899999999999999999999999999998876 8999999999999988899999999999
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 007101 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 238 (618)
++.|.++++..+. +++..++++|.||+. ++..+..+...|++|.|+.++.++ ..+..++.+|++++. +
T Consensus 333 V~kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-d 400 (708)
T PF05804_consen 333 VEKLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-D 400 (708)
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-C
Confidence 9999999998765 899999999999999 778899999999999999999865 456679999999997 6
Q ss_pred cccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 007101 239 DENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (618)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (618)
++.+..+...++++.+++++- .+++.+...+++.+.|++.. +.+.+.+.+.++++.|+......... -....+.|
T Consensus 401 d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRN 476 (708)
T PF05804_consen 401 DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRN 476 (708)
T ss_pred HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHH
Confidence 788889999999999998765 56777888889999999776 55567888888999999876554322 23468999
Q ss_pred HhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCcchhhH-hcCCHHHHHHhhcCC--ChhHHHH
Q 007101 318 FAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKLLDSK--NGSLQHN 393 (618)
Q Consensus 318 l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~-~~~~l~~L~~ll~~~--~~~v~~~ 393 (618)
++.+++..+..+. +++..|+..+.. .+++....+.++|+||...+.+-..++ +.+.++.+.+++..+ +.++...
T Consensus 477 iS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE 554 (708)
T PF05804_consen 477 ISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLE 554 (708)
T ss_pred HHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHH
Confidence 9877655555443 467777787765 578889999999999987665555555 458888899999654 4578888
Q ss_pred HHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC--CHhHHHHHHHH
Q 007101 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALA 471 (618)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~ 471 (618)
++..++.++..+.....+.+.| +++.|+.+|+.. |.++..+.+++
T Consensus 555 ~Vi~~gtla~d~~~A~lL~~sg---------------------------------li~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 555 VVILLGTLASDPECAPLLAKSG---------------------------------LIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred HHHHHHHHHCCHHHHHHHHhCC---------------------------------hHHHHHHHHHhhCchHHHHHHHHHH
Confidence 9999999998887776666555 566788888775 78999999999
Q ss_pred HHhhcCCCccccceec-CCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 472 LAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 472 L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
++.+...++.+..+.+ .+++..|+.++.++|+.+|..|-.+|--++..
T Consensus 602 f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 602 FYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999988887765544 67788999999999999999999999888876
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=3.7e-22 Score=207.68 Aligned_cols=357 Identities=21% Similarity=0.247 Sum_probs=295.4
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHH
Q 007101 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140 (618)
Q Consensus 61 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L 140 (618)
.++..|.+.+.. ++.+....++..|..++-..+++..|.+.|+|+.|++++.+++. +++..++++|
T Consensus 290 ~iV~~Lv~~Ldr--~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~------------~l~~~aLrlL 355 (708)
T PF05804_consen 290 GIVSLLVKCLDR--ENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE------------DLVNVALRLL 355 (708)
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH------------HHHHHHHHHH
Confidence 344444444432 25668889999999999999999999999999999999998877 8999999999
Q ss_pred HHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-C
Q 007101 141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-T 219 (618)
Q Consensus 141 ~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~ 219 (618)
.||+.+++.|..++..|++|.|+.+|.+. +.+..++.+|.+++. +++.+..+...+++|.+++++-. +
T Consensus 356 ~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~ 424 (708)
T PF05804_consen 356 FNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENS 424 (708)
T ss_pred HHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCC
Confidence 99999999999999999999999999865 556779999999999 66788899999999999997654 5
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHh
Q 007101 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (618)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (618)
++.+...++..+.|++. ++.+.+.+++.|+++.|++........+ .+..++|++.+++..+..+. +.+..|+.+
T Consensus 425 ~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~ 498 (708)
T PF05804_consen 425 EEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKI 498 (708)
T ss_pred CccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHH
Confidence 66777788899999997 7888899999899999997665433222 34689999888755444333 477778888
Q ss_pred hcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCH
Q 007101 300 LSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (618)
Q Consensus 300 l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l 376 (618)
+..+ +.+...+++++|+|+...+.+....+.+.+++|.+.+.|.. .++++...++-.++.++.++.....+.+.|.+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli 578 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLI 578 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChH
Confidence 7765 66788999999999986655666666678999999999976 35678889999999999888888888899999
Q ss_pred HHHHHhhcCC--ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007101 377 VPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 454 (618)
Q Consensus 377 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 454 (618)
+.|+.+++.+ |.++....+.+++.+..+++.+..+.... ++...++
T Consensus 579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~--------------------------------~~~~yli 626 (708)
T PF05804_consen 579 PTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKET--------------------------------EIPAYLI 626 (708)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc--------------------------------chHHHHH
Confidence 9999999764 68899999999999999998888776532 4566799
Q ss_pred HHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007101 455 YLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 455 ~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
.++++.+++++..+-.+|.-++..+.
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999998876543
No 11
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.88 E-value=2.7e-21 Score=203.54 Aligned_cols=323 Identities=22% Similarity=0.274 Sum_probs=272.6
Q ss_pred HHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccc---------------------------------------
Q 007101 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD--------------------------------------- 122 (618)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~--------------------------------------- 122 (618)
+-.+.+..++.+++.+..|+..|++|.|+++|..++....+
T Consensus 213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC 292 (2195)
T KOG2122|consen 213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC 292 (2195)
T ss_pred HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999887663221
Q ss_pred -------------cCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCC----cccchHHHHHH
Q 007101 123 -------------RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNC----SRAVNSVIRRA 185 (618)
Q Consensus 123 -------------~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~----~~~~~~~~~~a 185 (618)
.+|-++++.+. .|+.+|.+++.++++|..+.+.|++..+-+|+.-...... ......+++++
T Consensus 293 ~~~~~~lqar~~~~apa~~~H~lc-aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa 371 (2195)
T KOG2122|consen 293 ETCWTWLQARGPAIAPASDEHQLC-AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYA 371 (2195)
T ss_pred HHHHHHHHhcCCCCCCcccchhhH-HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 23555555543 7889999999999999999999999999998875433222 22334899999
Q ss_pred HHHHHHhhhcCchhhHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc-HHHHHhcCCHHHHHHh-hcCCC
Q 007101 186 ADAITNLAHENSSIKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILM-LRSED 262 (618)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~l-l~~~~ 262 (618)
..+|.||.+++..++..++. .|++..++..|.+...++....+.+|+||++..+.+ ++.+.+.|-+..|+.. |+...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 99999999999988877765 689999999999998899999999999999965555 5556678889888864 55667
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHh-cCCHHHHHHhhcCC----ChhHHHHHHHHHHHHh---cCChhhHHHHHhcCC
Q 007101 263 SAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSC----CSESQREAALLLGQFA---ATDSDCKVHIVQRGA 334 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~----~~~~~~~a~~~L~~l~---~~~~~~~~~l~~~~~ 334 (618)
+......+.+||||+.++.+++..++. .|.+..|+.+|... ...+.+.+..+|.|++ ..+++.++.+.++++
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 778899999999999999999898886 68899999999754 3456778888888876 356788899999999
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC
Q 007101 335 VRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (618)
Q Consensus 335 ~~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (618)
+..|++.|++....+..++|++||||+. +.+.+..+++.|+++.|.+++++++..+.+.++.+|.||....
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999975 6677888999999999999999999999999999999997554
No 12
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.85 E-value=9.3e-19 Score=163.96 Aligned_cols=428 Identities=16% Similarity=0.124 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhC----CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHH
Q 007101 78 AAAKRATHVLAELAKNEEVVNWIVEG----GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (618)
.+...+..+++..+.++-.+..|.+. |.+..|.+...+++. ++-.++.++|+|+| ++.+.|.+
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R~a 124 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENRAA 124 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhHHH
Confidence 46777788889988887777777654 555566666665544 89999999999999 99999999
Q ss_pred HHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc--CCCHHHHHHHHHH
Q 007101 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGA 230 (618)
Q Consensus 153 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~ 230 (618)
+.+.|+-..++++|+..-....+ ...+....+...|.|...++...+.+..+.|.++.|...+. -.+.+.-+..+..
T Consensus 125 ~~~lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~ 203 (604)
T KOG4500|consen 125 FFNLGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAP 203 (604)
T ss_pred HHhcCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhc
Confidence 99999988888888765332211 11267777889999999999999999999999999888774 3566666666666
Q ss_pred HHHhhcCC-cccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC-CChhH
Q 007101 231 LRTLAFKN-DENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSES 307 (618)
Q Consensus 231 L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~ 307 (618)
..++.+-. +...+...+..+...+++++. .-++++++.+...|...+.+ +..+-.+.+.|.+..++.+++. +...-
T Consensus 204 f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~ 282 (604)
T KOG4500|consen 204 FFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTK 282 (604)
T ss_pred cccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccc
Confidence 66665422 223445566777788888887 45677888889999988665 5566778889999999999876 22211
Q ss_pred -------HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHH
Q 007101 308 -------QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 380 (618)
Q Consensus 308 -------~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~ 380 (618)
.+.++....-+..+++.-........+++.+.+|+.+.+......+..+++|+++.+.++..+++.+.+..|+
T Consensus 283 k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~ 362 (604)
T KOG4500|consen 283 KTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLI 362 (604)
T ss_pred hHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 1233333333334444433333334489999999999999999999999999999999999999999999999
Q ss_pred HhhcC-----CChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccch--------hhhhHHHHHHHHHHHHHH--HH
Q 007101 381 KLLDS-----KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF--------IVQATKDCVAKTLKRLEE--KI 445 (618)
Q Consensus 381 ~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~--------~~~~~~~~~~~~~~~~~~--~~ 445 (618)
.++.. ++.+++.+++.+|.|+.-...++..+...|+.+.++.... ........+.+....+.. .-
T Consensus 363 ~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~k 442 (604)
T KOG4500|consen 363 SCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAK 442 (604)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhc
Confidence 98843 5788999999999999999999999999998877654222 111223333333332222 12
Q ss_pred hhhhHHHHHHHHhhCCHh-HHHHHHHHHHhhcCCCc---cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 446 HGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
+...+..|++.-++++.. +.-+..+.+..+..... ....+.+.|++..++.++.+.+...+.+|..+|+-++..
T Consensus 443 n~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 443 NPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred CHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 667889999999999876 88888888888876544 334556889999999999999999999999999988775
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=1.5e-19 Score=183.44 Aligned_cols=393 Identities=21% Similarity=0.229 Sum_probs=289.0
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007101 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
..+++.+.+|.+. ++.+|..|+..+..+|. +.+.+..+.+.|+|+.|+.+|.+... +|+.+
T Consensus 233 ~~lpe~i~mL~~q------~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~ 294 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ------DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQ 294 (717)
T ss_pred cccHHHHHHHhcc------ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHH
Confidence 3567778888765 66789999999999999 78888899999999999999999988 99999
Q ss_pred HHHHHHHhc-CC--hhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHH
Q 007101 136 SAFALGLLA-VK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (618)
Q Consensus 136 a~~~L~~l~-~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (618)
|+++|.||. .+ .+++-.+.+.++++.++.+|+...+. ++++.+..+|+||+.. +..+..++ ...+..|
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tL 365 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSSN-DALKMLII-TSALSTL 365 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccch-hHHHHHHH-HHHHHHH
Confidence 999999999 33 34889999999999999999986553 9999999999999984 55555444 4556666
Q ss_pred HHhhcCC--------------CHHHHHHHHHHHHHhhcCCcccHHHHHh-cCCHHHHHHhhc------CCCHHHHHHHHH
Q 007101 213 VELLEFT--------------DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLR------SEDSAIHYEAVG 271 (618)
Q Consensus 213 ~~ll~~~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~------~~~~~v~~~a~~ 271 (618)
...+-.+ +..+...+.++|.|++....+.++.+.+ .|.+..|+..++ +.+....++|+.
T Consensus 366 t~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvC 445 (717)
T KOG1048|consen 366 TDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVC 445 (717)
T ss_pred HHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 5544221 2568889999999999878888888877 688999998876 456677899999
Q ss_pred HHHHHhcCChh-----HHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC---------------ChhhHHHHHh
Q 007101 272 VIGNLVHSSPN-----IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---------------DSDCKVHIVQ 331 (618)
Q Consensus 272 ~L~~l~~~~~~-----~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~---------------~~~~~~~l~~ 331 (618)
.|.|++..... ........+.. .....+. +...+.+.-... .+..-..++.
T Consensus 446 ilRNLSYrl~~Evp~~~~~~~~~~~~~------~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~ 516 (717)
T KOG1048|consen 446 ILRNLSYRLEAEVPPKYRQVLANIARL------PGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWH 516 (717)
T ss_pred HHhhcCchhhhhcCHhhhhHhhccccc------ccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeec
Confidence 99999654221 11111111100 0000000 111111111100 1111122444
Q ss_pred cCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCc-----c-hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007101 332 RGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN-----Q-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 332 ~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~-----~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
..++...+.+|. +.++.+.++++++|.|++.+... + ..+.+..++++++.+++..+..+...++.+|.||+.+
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 556776666665 46889999999999999875422 2 2347889999999999999999999999999999999
Q ss_pred CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCC------HhHHHHHHHHHHhhc-C
Q 007101 405 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLC-S 477 (618)
Q Consensus 405 ~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~l~-~ 477 (618)
..++..+-. .+++.|+..|..+. .++...+|.+|.++. .
T Consensus 597 ~rnk~ligk----------------------------------~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 597 IRNKELIGK----------------------------------YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred chhhhhhhc----------------------------------chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 988776642 46777888887653 588889999999997 5
Q ss_pred CCccccceecCCchHHHHHHhcCC-ChhhhhhHHHHHHHhhhh
Q 007101 478 PDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANK 519 (618)
Q Consensus 478 ~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~ 519 (618)
+..+...+.+.++++.|+.+..+. ++++-++|+..|..|=.+
T Consensus 643 ~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 643 NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 556777778999999999998874 446666666666655443
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=2e-15 Score=156.49 Aligned_cols=396 Identities=19% Similarity=0.205 Sum_probs=291.8
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHH
Q 007101 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (618)
+++....++.+|..+......... ..+..+.|...|.+++. .||..+++.|++++ .+......+.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 444455677778777764332222 45677899999999887 99999999999999 5666677778
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007101 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
+.+.++.++.++.+.+. ++...|+.+|.+++...+ ....+...+.+..|..++..++..+|..+..++.++
T Consensus 117 ~~~l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDL--------SVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred CccHHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 89999999999998877 999999999999998544 444576778899999999888889999999999999
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhH-----H-
Q 007101 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-----Q- 308 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-----~- 308 (618)
+..+++....+.+.|+++.++..++++|.-++..++.+|..++. .+...+.+.+.|+++.|..++.+...+. .
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 98889999999999999999999999999999999999999998 4666788899999999999997653322 1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhh-HhcC-C----HHHHHHh
Q 007101 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI-AHNG-G----LVPLLKL 382 (618)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~~-~----l~~L~~l 382 (618)
.......++++..++..... .-..++..+.+++.+.++..+..|..+++.++...+.+..+ ...+ . +..+...
T Consensus 267 ~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred hhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 23335677777543332221 12346667777888899999999999999999877776666 3332 3 3334445
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCcc--hhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHhh
Q 007101 383 LDSKNGSLQHNAAFALYGLADNEDN--VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRV 459 (618)
Q Consensus 383 l~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~ll~~ 459 (618)
..+...+++..++.+|.++....+. ...+. .....+.....++... .+..+++.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~-----------------------~~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDRQDNDIL-----------------------SITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-----------------------HHHHHHHHHhcCCchHHHHHHHhcC
Confidence 5667889999999999999533221 11111 1111222222333334 78888999
Q ss_pred CCHhHHHHHHHHHHhhcCCCccccce-ecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 460 AEKGVQRRVALALAHLCSPDDQRTIF-IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 460 ~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
|-+++|..+...|..++..+.....+ ...|.+..|+.--...+.+.++.=-.++..|++.
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988755443 4456666666555555555554444444445543
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.4e-15 Score=136.96 Aligned_cols=342 Identities=19% Similarity=0.240 Sum_probs=264.9
Q ss_pred HHHHHHHHHhcC----ChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 134 KGSAFALGLLAV----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 134 ~~a~~~L~~l~~----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
+.....|.++++ +...|......|..+.++.++.....+ +..+...++.+|..+....|+ +....++
T Consensus 77 ~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~-----~~~~l~ksL~al~~lt~~qpd----l~da~g~ 147 (461)
T KOG4199|consen 77 EETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESP-----NESVLKKSLEAINSLTHKQPD----LFDAEAM 147 (461)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCC-----chhHHHHHHHHHHHhhcCCcc----hhccccH
Confidence 345556666662 112233334567888888777643221 126778889999998887665 5567788
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh-----
Q 007101 210 PPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP----- 281 (618)
Q Consensus 210 ~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~----- 281 (618)
..++.+|.. ++.++-...+.++..-|..++.+++.+++.++++.+...+. .+...+.++..|+++-+..+++
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 999998854 56788888889999888888999999999999999997666 4455788899999999876533
Q ss_pred ----hHHHHHHhcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHH---HH
Q 007101 282 ----NIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLR---EM 352 (618)
Q Consensus 282 ----~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~---~~ 352 (618)
+..+.+...|++..|++.+... ++.+...++.+|..++- ..+....+.+.|++..|+.++.+ ++..+| ..
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 3456777888899999999765 67888899999999984 46677889999999999999988 444444 57
Q ss_pred HHHHHHHhhcCCCcchhhHhcCCHHHHHHhh--cCCChhHHHHHHHHHHHhh-cCCcchhHHHhhcccccccccchhhhh
Q 007101 353 SAFALGRLAQDMHNQAGIAHNGGLVPLLKLL--DSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQA 429 (618)
Q Consensus 353 a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~~~~L~~~~~~~~~ 429 (618)
++..|..|+.++.++..+++.|+.+.++.++ ++.++.|...++.++.-|+ +.+++...+++.|+-..
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~---------- 376 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADL---------- 376 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHH----------
Confidence 7888888999999999999999999999887 5578999999999999997 66777778887775432
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhh-C-CHhHHHHHHHHHHhhcC-CCccccceecCCchHHHHHHhcCCChhhh
Q 007101 430 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-A-EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQ 506 (618)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~-~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~ 506 (618)
.++-|+. | ...+|+++|+.+.|+.. +.+++..+ -.+|+..|+..-...++..+
T Consensus 377 -----------------------avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~-l~~GiE~Li~~A~~~h~tce 432 (461)
T KOG4199|consen 377 -----------------------AVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL-LANGIEKLIRTAKANHETCE 432 (461)
T ss_pred -----------------------HHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH-HhccHHHHHHHHHhcCccHH
Confidence 3344443 3 45799999999999964 44566654 56678999999999999999
Q ss_pred hhHHHHHHHhhhh
Q 007101 507 LDGAVALFKLANK 519 (618)
Q Consensus 507 ~~a~~~L~~L~~~ 519 (618)
..|..+|..|..+
T Consensus 433 ~~akaALRDLGc~ 445 (461)
T KOG4199|consen 433 AAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHhcCcc
Confidence 9999999888765
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=8.4e-17 Score=170.30 Aligned_cols=349 Identities=22% Similarity=0.227 Sum_probs=274.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh---
Q 007101 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI--- 209 (618)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i--- 209 (618)
++...+.|..++.+++.+..+...|.++.|+++|...++.. .+.+..+-.+|.|+....++.+..=.+..++
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~-----kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lL 285 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDED-----KEARKRASAALHNIVHSQPDEKRGRREKKVLHLL 285 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhh-----HHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHH
Confidence 34566777788888999999999999999999998876632 2889999999999998777654433332233
Q ss_pred HHHHHhhc-------C--------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC------------CC
Q 007101 210 PPLVELLE-------F--------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------------ED 262 (618)
Q Consensus 210 ~~L~~ll~-------~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------------~~ 262 (618)
..+..++. . ++..-...|+.+|..+++ +++.+..+.+.|+++.+.+|+.- ..
T Consensus 286 eQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~ 364 (2195)
T KOG2122|consen 286 EQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGEC 364 (2195)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 22222221 1 112233477888888887 78999999999999999998761 12
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHh-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHH
Q 007101 263 SAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIE 340 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~~~~~~L~~ 340 (618)
..+|..+..+|.||+.++..++..++. .|++..++.-|.+...++..-.+.+|.||+...+.+ +..+.+.|-+..|..
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 468999999999999998888888874 789999999999888888888899999998554444 455567888888887
Q ss_pred h-hCCCCHHHHHHHHHHHHHhhcCC-CcchhhHhc-CCHHHHHHhhcCC----ChhHHHHHHHHHHHhhcC----Ccchh
Q 007101 341 M-LQSPDVQLREMSAFALGRLAQDM-HNQAGIAHN-GGLVPLLKLLDSK----NGSLQHNAAFALYGLADN----EDNVA 409 (618)
Q Consensus 341 l-L~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~-~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~~----~~~~~ 409 (618)
. |...........+.+||||+.+. +|+..+... |.+..|+.+|... ...+.+.+-++|.|.+.. +.+++
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 4 55566677789999999998754 677777655 6688899998543 456889999999998743 55555
Q ss_pred HHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhc-CCCccccceecC
Q 007101 410 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC-SPDDQRTIFIDG 488 (618)
Q Consensus 410 ~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 488 (618)
.+.++. ++..|+..|++.+..|..++|.+|.||+ .++..++.+++.
T Consensus 525 ILR~~N---------------------------------CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~ 571 (2195)
T KOG2122|consen 525 ILRRHN---------------------------------CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD 571 (2195)
T ss_pred HHHHhh---------------------------------HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc
Confidence 555543 6677999999999999999999999995 677788888999
Q ss_pred CchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 489 GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 489 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
|+++.|..++.+++..+-.-++.+|.||..+.
T Consensus 572 gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 572 GAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999998875
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=6.9e-15 Score=134.03 Aligned_cols=311 Identities=18% Similarity=0.231 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhC
Q 007101 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 156 (618)
.+.+.++.+|..+... ...+.+..++..++.+|.....+ .++-....+.+..-| .++.+|+.+++.
T Consensus 122 ~~l~ksL~al~~lt~~---qpdl~da~g~~vvv~lL~~~~~~----------~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~ 188 (461)
T KOG4199|consen 122 SVLKKSLEAINSLTHK---QPDLFDAEAMAVVLKLLALKVES----------EEVTLLTLQWLQKACIMHEVNRQLFMEL 188 (461)
T ss_pred hHHHHHHHHHHHhhcC---CcchhccccHHHHHHHHhcccch----------HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3445555555555442 23467788899999999766542 288888889999888 888999999999
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc---------hhhHHHHhcCChHHHHHhhcC-CCHHHHHH
Q 007101 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEF-TDTKVQRA 226 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~---------~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~ 226 (618)
++++.+...|...... .+.+...+++.-|..++. ...+.+...|++..|++.++. -+|.+...
T Consensus 189 ~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~ 261 (461)
T KOG4199|consen 189 KILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVS 261 (461)
T ss_pred hHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHH
Confidence 9999999888877653 688889999998886432 234567778889999999976 45788889
Q ss_pred HHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC-CHH---HHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc-
Q 007101 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSA---IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS- 301 (618)
Q Consensus 227 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~- 301 (618)
++.+|..|+- +++.++.+.+.|+++.|+.++.+. +.. ....++..|+.|+ ++++.+..+++.|+.+.++.++.
T Consensus 262 l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 262 LSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHH
Confidence 9999999997 789999999999999999999863 333 4467777778875 55778899999999999998875
Q ss_pred -CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHH
Q 007101 302 -SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP 378 (618)
Q Consensus 302 -~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~ 378 (618)
+.++.+..+++.+++-++-..|+....+++.|+-...++.++. ....++.++|+++.|++....+....+-..+++.
T Consensus 340 h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~ 419 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK 419 (461)
T ss_pred cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence 3477888999999999998889999999999999999998886 3567999999999999886666556666778999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhcCCcchhH
Q 007101 379 LLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (618)
Q Consensus 379 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (618)
|+......++.....+-.+|..|-.+..+++.
T Consensus 420 Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 420 LIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 99999998999999999999999765554433
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=1e-15 Score=155.96 Aligned_cols=323 Identities=26% Similarity=0.313 Sum_probs=245.3
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 007101 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 238 (618)
++..+.+|....+ .++..|..-+..+|..+...+..+.+.|+|+.|+.++.+.+.+|+..||++|.||..+.
T Consensus 235 lpe~i~mL~~q~~--------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 235 LPEVISMLMSQDP--------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred cHHHHHHHhccCh--------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc
Confidence 5666777776655 88899999999999999999999999999999999999999999999999999999876
Q ss_pred cc--cHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC------------
Q 007101 239 DE--NKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------------ 303 (618)
Q Consensus 239 ~~--~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------------ 303 (618)
.. ++-.+.+.++++.++.+|+. .|.++++.+..+|+||++. +..+..++ ...+..|..-+..+
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCcccc
Confidence 55 88889999999999999995 7999999999999999766 44444444 34555555444321
Q ss_pred --ChhHHHHHHHHHHHHhcCChhhHHHHHh-cCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCC---------
Q 007101 304 --CSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMH--------- 365 (618)
Q Consensus 304 --~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~~--------- 365 (618)
..++-..+..+|.|+++...+.++.+.+ .|+|+.|+..++ ..+....+++...|.||+..-+
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~ 464 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQ 464 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhh
Confidence 1345678999999999877888887776 688999998876 2466777888889998863111
Q ss_pred ------------------------cch---------------------hhHhcCCHHHHHHhh-cCCChhHHHHHHHHHH
Q 007101 366 ------------------------NQA---------------------GIAHNGGLVPLLKLL-DSKNGSLQHNAAFALY 399 (618)
Q Consensus 366 ------------------------~~~---------------------~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~ 399 (618)
.+. .++...++.+-+.++ .+.+....++++.+|-
T Consensus 465 ~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQ 544 (717)
T KOG1048|consen 465 VLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQ 544 (717)
T ss_pred HhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHh
Confidence 000 022222333322233 4457778888889999
Q ss_pred HhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCC
Q 007101 400 GLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 479 (618)
Q Consensus 400 ~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 479 (618)
|++.....-...+...++ .....++.++++|+.++..+...++.+|.|++.+.
T Consensus 545 NltA~~~~~~~~~~~~v~---------------------------~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 545 NLTAGLWTWSEYMRGAVF---------------------------RKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred hhhccCCcchhHHHhhhh---------------------------hhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 987553322222221111 13457788999999999999999999999999999
Q ss_pred ccccceecCCchHHHHHHhcCCC------hhhhhhHHHHHHHhhhh
Q 007101 480 DQRTIFIDGGGLELLLGLLGSTN------PKQQLDGAVALFKLANK 519 (618)
Q Consensus 480 ~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~L~~~ 519 (618)
.++..+ ..++++.|++.+-... .++-..++.+|.++...
T Consensus 598 rnk~li-gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 598 RNKELI-GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred hhhhhh-hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 988876 4889999999997533 56777888889888865
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.71 E-value=5.3e-14 Score=145.98 Aligned_cols=367 Identities=20% Similarity=0.176 Sum_probs=281.7
Q ss_pred HHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHH
Q 007101 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (618)
Q Consensus 107 ~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~ 186 (618)
+.+...|+..+. +....++.+|..+......... ..+..+.+...|..++. .++..++
T Consensus 41 ~~lf~~L~~~~~------------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l 98 (503)
T PF10508_consen 41 PVLFDCLNTSNR------------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLAL 98 (503)
T ss_pred HHHHHHHhhcCh------------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHH
Confidence 347778887655 6667888888888844333333 44567888888888766 9999999
Q ss_pred HHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHH
Q 007101 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (618)
Q Consensus 187 ~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~ 266 (618)
+.|.++..++......+...+.++.++.++.+++.++...|+.+|..++. .+...+.+.+.+.+..|..++..+++.+|
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR 177 (503)
T PF10508_consen 99 KQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVR 177 (503)
T ss_pred HHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHH
Confidence 99999998777666777778999999999999999999999999999997 56666677788889999999988888999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC-
Q 007101 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP- 345 (618)
Q Consensus 267 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~- 345 (618)
..+..++.+++..+++....+...|+++.++..+.+.+.-++..++.+|..++. .+.....+.+.|+++.|..++.+.
T Consensus 178 ~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 178 CRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc
Confidence 999999999999999998889999999999999999888889999999999997 677788889999999999999763
Q ss_pred -CH---HH-HHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHH-Hhhccccc
Q 007101 346 -DV---QL-REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQK 419 (618)
Q Consensus 346 -~~---~v-~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~~~~~~ 419 (618)
++ .+ ........++++...+..-.-.....+..+.+++.+.+...+..|..+++.++...+.+..+ ...+.
T Consensus 257 ~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~--- 333 (503)
T PF10508_consen 257 EDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP--- 333 (503)
T ss_pred cCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch---
Confidence 33 11 22333667777775322222222345566777888899999999999999999888777666 33221
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCcc--c--------c--ceec
Q 007101 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--R--------T--IFID 487 (618)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~--------~--~~~~ 487 (618)
.-..++..+-....++..++|..++.++.++...... . . ....
T Consensus 334 -------------------------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~ 388 (503)
T PF10508_consen 334 -------------------------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLS 388 (503)
T ss_pred -------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc
Confidence 0112455566666777889999999999999432221 0 0 1112
Q ss_pred CCchH-HHHHHhcCCChhhhhhHHHHHHHhhhhhccCCc
Q 007101 488 GGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSS 525 (618)
Q Consensus 488 ~~~l~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 525 (618)
.+-.. .+..+++.+=|++|.++...|..|+.+.++...
T Consensus 389 ~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~ 427 (503)
T PF10508_consen 389 GSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQRE 427 (503)
T ss_pred CCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 23344 677788777799999999999999998766543
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.69 E-value=2.1e-14 Score=135.15 Aligned_cols=349 Identities=17% Similarity=0.148 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
.++.....+++..+.++.-|..+....+...++..|.....+..+ ++..+++++|+|+|.++.+.|..+...||-+
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~----ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT----EVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc----cHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 567778888999887777777777665556666766665443322 8999999999999999999999999999988
Q ss_pred HHHHhhcC----C---CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCh
Q 007101 211 PLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSP 281 (618)
Q Consensus 211 ~L~~ll~~----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~ 281 (618)
.+++.|+. + +.+....+++.|.|..-++++.+..+++.|+++.|...+. -.+.+..+.......|+.+-..
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88887764 2 2467778899999999889999999999999999988776 3455555555555555543222
Q ss_pred h-HHHHHHhcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHH-------HHH
Q 007101 282 N-IKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-------LRE 351 (618)
Q Consensus 282 ~-~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~-------v~~ 351 (618)
+ ......+..+.-.+++++.+. +++.++.+..++...+ .+...+..+.+.|.+..++++++. ++.. .-.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 2 122333455566677777644 5666777777888876 446667778889999999998875 2221 222
Q ss_pred HHHHHHHHhhcCCCcchhhHhcC-CHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhH
Q 007101 352 MSAFALGRLAQDMHNQAGIAHNG-GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 430 (618)
Q Consensus 352 ~a~~~L~~l~~~~~~~~~l~~~~-~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~ 430 (618)
.++....-+..+++.-..+...+ .+..+...+.+.+...+..+.-+++|+++.+.++..+++.+
T Consensus 292 ~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~--------------- 356 (604)
T KOG4500|consen 292 RIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD--------------- 356 (604)
T ss_pred hhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH---------------
Confidence 34444444455555544455554 78889999999999999999999999999999988887765
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhh-----CCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhh
Q 007101 431 KDCVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ 505 (618)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 505 (618)
++..|++++.. ++.++|.+++.+|.|++....++..+...|..+.++..++...|++
T Consensus 357 ------------------~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 357 ------------------FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred ------------------HHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcc
Confidence 44556666654 4678899999999999999999999999999999999999988888
Q ss_pred hhhHHHHHHHhh
Q 007101 506 QLDGAVALFKLA 517 (618)
Q Consensus 506 ~~~a~~~L~~L~ 517 (618)
++.-...+..+-
T Consensus 419 ~fkllgTlrM~~ 430 (604)
T KOG4500|consen 419 TFKLLGTLRMIR 430 (604)
T ss_pred hHHHHHHHHHHH
Confidence 876666555443
No 21
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.9e-14 Score=152.01 Aligned_cols=402 Identities=17% Similarity=0.190 Sum_probs=268.2
Q ss_pred hhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccC--hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhH
Q 007101 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (618)
Q Consensus 54 ~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~ 131 (618)
.|+..++-+++...+. ++..|..|+.+|..+... ......+ ....+.|.+.+.+++. .
T Consensus 115 ~WPell~~L~q~~~S~------~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~------------~ 174 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSP------NPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSS------------P 174 (1075)
T ss_pred chHHHHHHHHHHhcCC------CcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcc------------h
Confidence 5555555555555444 555788888888888763 2221111 1234455555665555 5
Q ss_pred HHHHHHHHHHHhc-CC---hhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 007101 132 VEKGSAFALGLLA-VK---PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (618)
Q Consensus 132 v~~~a~~~L~~l~-~~---~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (618)
||..|+++++.++ .. ...+..+. ..+|.++..+......... +....++.+|..+....+..-.... ..
T Consensus 175 vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~----~~a~~~l~~l~El~e~~pk~l~~~l-~~ 247 (1075)
T KOG2171|consen 175 VRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDD----DAAKSALEALIELLESEPKLLRPHL-SQ 247 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccch----HHHHHHHHHHHHHHhhchHHHHHHH-HH
Confidence 9999999999999 33 33333333 3578888877765433221 5567788999999887776544333 24
Q ss_pred ChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcccHHHHHh--cCCHHHHHHhhcCC--C--------------HHHHH
Q 007101 208 GIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSE--D--------------SAIHY 267 (618)
Q Consensus 208 ~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~--~--------------~~v~~ 267 (618)
+++......++. ++.+|..|+..|..++...+...+.... ..+++.++.++.+. + ..-..
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 566666666664 5889999999999999753433333322 33455666665421 1 12356
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCH
Q 007101 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (618)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~ 347 (618)
.|.++|-.++.+-+.. .+-.-+++.+-.++.+.+|.-|+.++.+|+.++.++.+.....+ ..+++.++..|+++++
T Consensus 328 ~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 328 AAEQALDRLALHLGGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHP 403 (1075)
T ss_pred HHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCH
Confidence 6777887776654321 11122567777888999999999999999999988777665533 5688999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcch-hhHhcCCHHHHHHhhcC-CChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccch
Q 007101 348 QLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 425 (618)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~-~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~ 425 (618)
.||.+|+.+++.++.+-.... .-.....++.|+..+.+ .+++|+..|+.++.|++..-.. .+ +.+
T Consensus 404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~--~~-----l~p------ 470 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK--SI-----LEP------ 470 (1075)
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--HH-----HHH------
Confidence 999999999999998654433 33344556678888876 4779999999999999854322 11 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCC-h
Q 007101 426 IVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN-P 503 (618)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~ 503 (618)
+-.+++. .+..++.++.+.+|+.++.+|+.++.......+-+-.-.+|.|...+...+ .
T Consensus 471 -------------------YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~ 531 (1075)
T KOG2171|consen 471 -------------------YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK 531 (1075)
T ss_pred -------------------HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch
Confidence 1224555 455566667899999999999999987777766666778999999988654 3
Q ss_pred h---hhhhHHHHHHHhhh
Q 007101 504 K---QQLDGAVALFKLAN 518 (618)
Q Consensus 504 ~---v~~~a~~~L~~L~~ 518 (618)
+ +|.....++.-++.
T Consensus 532 d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 532 DLRELRGKTMECLSLIAR 549 (1075)
T ss_pred hhHHHHhhHHHHHHHHHH
Confidence 3 34444444444443
No 22
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.62 E-value=2.2e-13 Score=151.68 Aligned_cols=277 Identities=22% Similarity=0.196 Sum_probs=217.9
Q ss_pred CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007101 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
...++.|+..|++++. .||..|+.+|+.+.. .+.++.|...|++.+. .++
T Consensus 620 ~~~~~~L~~~L~D~d~------------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~VR 669 (897)
T PRK13800 620 APSVAELAPYLADPDP------------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AVR 669 (897)
T ss_pred chhHHHHHHHhcCCCH------------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HHH
Confidence 4567889999987777 999999999987652 2357888999977765 899
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC
Q 007101 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (618)
..|+..|..+....+ ..+.+...|.++++.+|..++.+|..+.. +-...++..|.+++
T Consensus 670 ~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d 727 (897)
T PRK13800 670 RAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPD 727 (897)
T ss_pred HHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCC
Confidence 999999988753211 23567788888999999999998888752 12345778899999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 007101 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL 342 (618)
+.+|..|+.+|..+-. .+.|..++.+.+..+|..++.+|+.+..... ..++.|..++
T Consensus 728 ~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll 784 (897)
T PRK13800 728 HRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALT 784 (897)
T ss_pred HHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHh
Confidence 9999999999988611 2346778899999999999999999853321 2367888999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccc
Q 007101 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (618)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ 422 (618)
+++++.+|..++.+|+++... ...+..+...+.+.++.||..|+.+|..+...
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------------ 837 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAAD------------------ 837 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------------
Confidence 999999999999999988542 11235688889999999999999999877421
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCC
Q 007101 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN 502 (618)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~ 502 (618)
..++.|+.+|.++++.||..|+++|+.+.. .....+.|...+++.+
T Consensus 838 -------------------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d 883 (897)
T PRK13800 838 -------------------------VAVPALVEALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSD 883 (897)
T ss_pred -------------------------chHHHHHHHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCC
Confidence 245678999999999999999999998721 2235788899999999
Q ss_pred hhhhhhHHHHHHH
Q 007101 503 PKQQLDGAVALFK 515 (618)
Q Consensus 503 ~~v~~~a~~~L~~ 515 (618)
+.||..|..+|..
T Consensus 884 ~~Vr~~A~~aL~~ 896 (897)
T PRK13800 884 ADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999863
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.4e-12 Score=124.53 Aligned_cols=405 Identities=15% Similarity=0.146 Sum_probs=297.9
Q ss_pred hhhhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcch
Q 007101 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (618)
Q Consensus 50 ~~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (618)
..++.+...+.++.+.++.+... .......|+..|.|++.+-..-..|+...+|..||..|...+.
T Consensus 253 p~netLk~e~dr~~kklk~~~~K---QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~----------- 318 (791)
T KOG1222|consen 253 PKNETLKEEIDRLNKKLKTAIRK---QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS----------- 318 (791)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch-----------
Confidence 34555667777777777776422 2234556788899999987777789999999999999998887
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
++.......|-+|+--.+++..+.+.|.+..|+++...... +++...+..+.|++. +...+..++..|.+
T Consensus 319 -~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~Gll 388 (791)
T KOG1222|consen 319 -SLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLL 388 (791)
T ss_pred -HHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccch
Confidence 88889999999999777888999999999999999988876 999999999999999 66677778889999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
|.+..++.+... ..-|+..|+.++. ++..+..+.-..+++.+++.+ ...+.+|-...+....|++.. ..+.+.++
T Consensus 389 P~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvc 464 (791)
T KOG1222|consen 389 PHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVC 464 (791)
T ss_pred HHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEe
Confidence 999999977643 2346778888886 677788888888899998754 455666666666666777665 33345555
Q ss_pred hcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc
Q 007101 289 AAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 289 ~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 366 (618)
+-.++..|+...- ..+.- ....+.|++.+....+..+++ .+..|...++. .+......+.++++||.-.+-.
T Consensus 465 eGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 465 EGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 5557777775543 33332 245678887665545555543 46667776665 5566777888889998875544
Q ss_pred chh-hHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHH
Q 007101 367 QAG-IAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (618)
Q Consensus 367 ~~~-l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 443 (618)
-.. +.....+|-+-..+..+ ..+++....-+++.+++.......+..++
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~---------------------------- 590 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK---------------------------- 590 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc----------------------------
Confidence 444 44557787777777653 34566667777777777766655554444
Q ss_pred HHhhhhHHHHHHHHhhC--CHhHHHHHHHHHHhhcCCCccccceecCCch-HHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 444 KIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGL-ELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 444 ~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l-~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+++.++++|... +.+...+.+.+...+...+..+..+.+.... ..|+.++.+.+.++|+.+--+|--++.+.
T Consensus 591 -----~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 591 -----LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred -----cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 566688888764 6678888888888877776666655555444 47889999999999999988888887764
Q ss_pred c
Q 007101 521 T 521 (618)
Q Consensus 521 ~ 521 (618)
.
T Consensus 666 ~ 666 (791)
T KOG1222|consen 666 K 666 (791)
T ss_pred H
Confidence 3
No 24
>PRK09687 putative lyase; Provisional
Probab=99.61 E-value=1.3e-13 Score=131.11 Aligned_cols=254 Identities=19% Similarity=0.164 Sum_probs=199.4
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (618)
.++.|..+|.+.+. .++..+++.|..+-. ...++.+..++.++++.+|..++++|..+-..
T Consensus 24 ~~~~L~~~L~d~d~--------~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~ 84 (280)
T PRK09687 24 NDDELFRLLDDHNS--------LKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMA 84 (280)
T ss_pred cHHHHHHHHhCCCH--------HHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 47888899987766 899999999887653 23457788889999999999999999998742
Q ss_pred CcccHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007101 238 NDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (618)
+.. ....++.|..+ ++++++.|+..|+.+|+++....... ...++..+...+.+.++.+|..++.+|+
T Consensus 85 -~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 85 -KRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred -ccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 111 12356777766 67889999999999999995432211 1124566778888889999999999998
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHH
Q 007101 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 396 (618)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 396 (618)
++. ++. .++.|+.+|.++++.||..|+.+|+++..+. ...++.|+.++.+.++.|+..|+.
T Consensus 154 ~~~--~~~---------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 154 VIN--DEA---------AIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred ccC--CHH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHH
Confidence 873 222 5899999999999999999999999993321 245778999999999999999999
Q ss_pred HHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhc
Q 007101 397 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (618)
Q Consensus 397 ~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (618)
+|..+-. + .+++.|+..+.+++ ++..++.+|+.+.
T Consensus 215 aLg~~~~-~------------------------------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 215 GLALRKD-K------------------------------------------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHccCC-h------------------------------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 9988642 1 36788889998876 6778999999885
Q ss_pred CCCccccceecCCchHHHHHHhc-CCChhhhhhHHHHHHH
Q 007101 477 SPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK 515 (618)
Q Consensus 477 ~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~ 515 (618)
. ..++|.|.+++. ++++.++..|.++|..
T Consensus 250 ~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 250 D----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred C----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 4 247999999997 7899999999988754
No 25
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.2e-13 Score=134.33 Aligned_cols=246 Identities=18% Similarity=0.222 Sum_probs=208.1
Q ss_pred hHHHHHHHHHHHHHhcc--ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHH
Q 007101 76 DRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (618)
|+..|.+|+.-|+.+.. +++....|--.-.||.|+.+|++... ++++..|+++|.+|+ .-|.....
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------FDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHhhccchhhe
Confidence 66788999998888766 77777777777889999999998776 399999999999999 88999999
Q ss_pred HHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 007101 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (618)
Q Consensus 153 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (618)
++++++||.|+.-|...... ++.++++.+|-.++..++ +.+.+.|++...+.++...+..+|+.|+.+..
T Consensus 250 vV~~~aIPvl~~kL~~Ieyi-------DvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYI-------DVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred eecccchHHHHHhhhhhhhh-------HHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887663 999999999999999776 45778999999999999999999999999999
Q ss_pred HhhcC-CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhHHHHHHhcCCHHHHHHhhcCCC----
Q 007101 233 TLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQPVIGLLSSCC---- 304 (618)
Q Consensus 233 ~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~---- 304 (618)
|+|.. .++.-..+++ .+|.|..+|+..+....+.++.++..++.. .++.-+.+...|++....+++.-..
T Consensus 320 N~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence 99974 3444455565 499999999999998899999999888653 5666778888999999999987542
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC
Q 007101 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344 (618)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~ 344 (618)
..+.....+.|..++++++.....+...++...|..+|..
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 3345667788888998889888888889999999888864
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.8e-13 Score=126.69 Aligned_cols=357 Identities=18% Similarity=0.177 Sum_probs=270.7
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHH
Q 007101 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (618)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (618)
..+|.+|...+..+ +.+........|..++--.++...|.+.|+|..|++++...++ +++...+..
T Consensus 303 kniV~mLVKaLdr~--n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------------dL~~~tl~L 368 (791)
T KOG1222|consen 303 KNIVAMLVKALDRS--NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------------DLRKATLML 368 (791)
T ss_pred HhHHHHHHHHHccc--chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH------------HHHHHHHHH
Confidence 44666666665443 3445556677788888778889999999999999999998887 999999999
Q ss_pred HHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc-C
Q 007101 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-F 218 (618)
Q Consensus 140 L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~ 218 (618)
+.|++.+...|..++..|.+|.+..+|.+.... ..|+..+..++. +...+..+....+++.+...+- .
T Consensus 369 lfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~----------~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 369 LFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH----------GIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred hhhccccccccHHHhhccchHHHHHHhCCcccc----------hhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987542 457888888887 6678888988899998887654 4
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHH
Q 007101 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (618)
Q Consensus 219 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (618)
.+.++-...+....|+|. +..+.+.+++..++..|++. ++..++-+ ...++|++.+....+..++. .+..|.
T Consensus 438 ~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa 510 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLA 510 (791)
T ss_pred CCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHH
Confidence 556666666666678886 77888888888888888864 45555433 35677887765444444443 355566
Q ss_pred HhhcCCC-hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCcchhhHhcC
Q 007101 298 GLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNG 374 (618)
Q Consensus 298 ~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 374 (618)
..+..++ .....+++.+++|+.-.+-+-...+.+.+++|.+-..|+. ...+++....-+++.++.+......+...+
T Consensus 511 ~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~ 590 (791)
T KOG1222|consen 511 GIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK 590 (791)
T ss_pred HHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc
Confidence 6665553 4567788999999987666777778889999999998875 345677777778888888777667777888
Q ss_pred CHHHHHHhhcCC--ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 007101 375 GLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (618)
Q Consensus 375 ~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (618)
.++.|+++++.. +.+.....+.....+..++..+..+++.. ..-..
T Consensus 591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket--------------------------------~~~Ay 638 (791)
T KOG1222|consen 591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKET--------------------------------ALGAY 638 (791)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------------cchHH
Confidence 999999999763 56666777777777776666666665532 22345
Q ss_pred HHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007101 453 LLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 453 L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
++.++++.+.++|..+=.+|--++..+.
T Consensus 639 lIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 639 LIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 8999999999999998888888875543
No 27
>PRK09687 putative lyase; Provisional
Probab=99.59 E-value=3.2e-13 Score=128.39 Aligned_cols=254 Identities=16% Similarity=0.106 Sum_probs=198.0
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHH
Q 007101 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (618)
.++.|..+|.+.+. .+|..++++|+.+-. ..+++.+..++++.+. .++..
T Consensus 24 ~~~~L~~~L~d~d~------------~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~--------~vR~~ 73 (280)
T PRK09687 24 NDDELFRLLDDHNS------------LKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP--------IERDI 73 (280)
T ss_pred cHHHHHHHHhCCCH------------HHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH--------HHHHH
Confidence 47889999988887 999999999987753 2246777887777765 99999
Q ss_pred HHHHHHHhhhcCchhhHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH
Q 007101 185 AADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (618)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (618)
++++|+.+-..... ....++.|..+ ++++++.||..++.+|.+++...... ...++..+...+.++++
T Consensus 74 A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 74 GADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKST 142 (280)
T ss_pred HHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCH
Confidence 99999998652211 12345777766 67889999999999999997422111 12245667778889999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC
Q 007101 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~ 343 (618)
.||..++++|+.+. ++. .++.|+.++.+.++.++..|+.+|+.+...++ ..++.|+..|.
T Consensus 143 ~VR~~a~~aLg~~~--~~~---------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~ 202 (280)
T PRK09687 143 NVRFAVAFALSVIN--DEA---------AIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQ 202 (280)
T ss_pred HHHHHHHHHHhccC--CHH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhc
Confidence 99999999998872 222 68899999999999999999999999843333 25788999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhccccccccc
Q 007101 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 423 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~ 423 (618)
+.++.||..|.++|+++-. ...++.|++.+.+++ ++..++.+|+++-..
T Consensus 203 D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------------- 251 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK------------------- 251 (280)
T ss_pred CCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-------------------
Confidence 9999999999999988643 257899999998866 567888888887532
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHh-hCCHhHHHHHHHHHHh
Q 007101 424 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAH 474 (618)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~ 474 (618)
..++.|..++. ++|+.++..+.++|..
T Consensus 252 ------------------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ------------------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ------------------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 25777888887 7799999999988753
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.56 E-value=5.8e-13 Score=132.48 Aligned_cols=394 Identities=16% Similarity=0.150 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHH
Q 007101 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (618)
|++...+|..-..+++. +++....+++.|.++.|+.++...+... +++...+.+++.+. ........+
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~----------~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGST----------ELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCch----------hhhhhHHHHHHhHHhhccchHHHH
Confidence 55566788888888876 6777778999999999999998876632 77778888888888 777788899
Q ss_pred HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchh----------------------------------
Q 007101 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI---------------------------------- 199 (618)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~---------------------------------- 199 (618)
.+.+.++.++.+|.+.+.. .++...+.++.++...++..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~-------~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~ 164 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSL-------NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA 164 (678)
T ss_pred HHHhhHHHHHHHhcCcchH-------hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999988721 67777777777776533211
Q ss_pred ---------hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH---HhhcCCcccHHH----HHhcCCHH--HHHHhhcCC
Q 007101 200 ---------KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR---TLAFKNDENKNQ----IVECNALP--TLILMLRSE 261 (618)
Q Consensus 200 ---------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~~----~~~~~~~~--~L~~ll~~~ 261 (618)
+......|..+.+.-++...+..+|.+|+.+++ ++...++...-. ..+.|+.+ .+.++++++
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 111112222233333333335678888888888 777655554333 34456665 566788888
Q ss_pred CHHHHHHHHHHHHHHhcCChhHH-------------HHH--------HhcCCH-----HH--------HHHhhcCC----
Q 007101 262 DSAIHYEAVGVIGNLVHSSPNIK-------------KEV--------LAAGAL-----QP--------VIGLLSSC---- 303 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~-------------~~~--------~~~~~l-----~~--------L~~ll~~~---- 303 (618)
+...+..++.++.++...+.+.- ..+ ...+++ .. +.+-++..
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~ 324 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE 324 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence 88888999999988876551110 000 000110 00 11111111
Q ss_pred -ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChH----------------------HHHHhhCCCCHHHHHHHHHHHHHh
Q 007101 304 -CSESQREAALLLGQFAATDSDCKVHIVQRGAVR----------------------PLIEMLQSPDVQLREMSAFALGRL 360 (618)
Q Consensus 304 -~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~----------------------~L~~lL~~~~~~v~~~a~~~L~~l 360 (618)
..+...+...+-..+++..+..+........++ .+.......+...+.+++.++.++
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 011222333444445555555444433322211 111112235778888999999888
Q ss_pred hcCC-CcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC-CcchhHHHhhcccccccccchhhhhHHHHHHHHH
Q 007101 361 AQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (618)
Q Consensus 361 ~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~ 438 (618)
++.- .-+..+-...+..+|+++++.++..|...++++|+|+... ...+..+++.|++
T Consensus 405 srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI--------------------- 463 (678)
T KOG1293|consen 405 SRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI--------------------- 463 (678)
T ss_pred HHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH---------------------
Confidence 7642 2233466678899999999999999999999999999754 5566667776655
Q ss_pred HHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc--cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHh
Q 007101 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (618)
Q Consensus 439 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 516 (618)
..+..++.++++.++..+.|+|.++..+.+ .+..+...=+...+..+.+++++.||+.+...|.|+
T Consensus 464 ------------d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 464 ------------DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred ------------HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 458888999999999999999999986665 333444444667888888999999999999999999
Q ss_pred hhh
Q 007101 517 ANK 519 (618)
Q Consensus 517 ~~~ 519 (618)
..+
T Consensus 532 ~c~ 534 (678)
T KOG1293|consen 532 TCN 534 (678)
T ss_pred hcC
Confidence 886
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=2.2e-12 Score=119.55 Aligned_cols=226 Identities=22% Similarity=0.307 Sum_probs=177.2
Q ss_pred HhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchH
Q 007101 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (618)
Q Consensus 101 ~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (618)
.+.+-++.|+.+|+.... |.+++.+..++++.+..+.+++.+.+.|+++.+.++|.+++. .
T Consensus 9 l~~~~l~~Ll~lL~~t~d-----------p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~ 69 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-----------PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------S 69 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------H
Confidence 456668899999987654 499999999999999999999999999999999999999876 9
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007101 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
++..|+++|.|++. +.+++..+. ..++.+++.+.+. +..++..++++|.+|+. .++....+.. .++.++.+|
T Consensus 70 vr~~AL~aL~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL 143 (254)
T PF04826_consen 70 VREKALNALNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLL 143 (254)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHH
Confidence 99999999999998 444555443 2566666655443 67899999999999986 4555555554 699999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCCh--------------
Q 007101 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS-------------- 323 (618)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-------------- 323 (618)
..++..++..++++|.||+.. +.....++.++++..++.++... +.++...++..+.|+...-.
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~ 222 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSED 222 (254)
T ss_pred HcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCch
Confidence 999999999999999999765 77778889889999999999886 56778889999999852211
Q ss_pred hhHHHHHhcC-ChHHHHHhhCCCCHHHHHH
Q 007101 324 DCKVHIVQRG-AVRPLIEMLQSPDVQLREM 352 (618)
Q Consensus 324 ~~~~~l~~~~-~~~~L~~lL~~~~~~v~~~ 352 (618)
.....+.+.+ +.+.|..+..++|++|+..
T Consensus 223 ~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 223 SLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred hHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1111122222 4556666667777777754
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.51 E-value=9.5e-12 Score=138.79 Aligned_cols=265 Identities=20% Similarity=0.167 Sum_probs=207.3
Q ss_pred HHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHH
Q 007101 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (618)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (618)
++++.++..|+..|..+.. .+.++.|+..|.+++. .||..|+.+|..+.....
T Consensus 632 D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~------------~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAA------------AVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhccC-----
Confidence 3477889999998887642 4468999999988777 999999999988852211
Q ss_pred HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 007101 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (618)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (618)
..+.+...|.+.+. .++..++..|..+... -...++..|+++++.+|..|+.+|..
T Consensus 685 ----~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 685 ----PAPALRDHLGSPDP--------VVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVS 740 (897)
T ss_pred ----chHHHHHHhcCCCH--------HHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 13567777776443 8999999998876531 12456788999999999999999987
Q ss_pred hhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHH
Q 007101 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (618)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 313 (618)
+-. .+.|..++.++++.||..++.+|+.+..... ..++.|..++.+.++.+|..|+.
T Consensus 741 ~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 741 VDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred ccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHH
Confidence 631 2457788999999999999999999854321 23678899999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHH
Q 007101 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393 (618)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 393 (618)
+|+++... +. .++.++..|.++++.||..|+.+|..+.. ...++.|+.++.++++.||..
T Consensus 798 aLg~~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 798 ALAELGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred HHHhcCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHH
Confidence 99998421 11 24668889999999999999999988753 235688999999999999999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHH
Q 007101 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 473 (618)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 473 (618)
|+.+|..+...+ ...+.|...+++.++.||..|..+|.
T Consensus 858 A~~aL~~~~~~~------------------------------------------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 858 AVLALTRWPGDP------------------------------------------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHhccCCCH------------------------------------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999999873221 23455778899999999999999986
Q ss_pred h
Q 007101 474 H 474 (618)
Q Consensus 474 ~ 474 (618)
.
T Consensus 896 ~ 896 (897)
T PRK13800 896 H 896 (897)
T ss_pred h
Confidence 4
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=6.3e-12 Score=116.60 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=161.9
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007101 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
..+.++.+|... .|+.++..++.++.+.+..+.++..+.+.|+++.+..+|..+++ .++..|+
T Consensus 13 ~l~~Ll~lL~~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~AL 75 (254)
T PF04826_consen 13 ELQKLLCLLEST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKAL 75 (254)
T ss_pred HHHHHHHHHhcC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHHH
Confidence 345566666654 47789999999999999999999999999999999999999887 9999999
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc
Q 007101 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (618)
Q Consensus 138 ~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (618)
++|.|++.+.+++..+-. .++.+++.......++ +++..+++.|.||+.. ...+..+. +.++.++.++.
T Consensus 76 ~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~ 144 (254)
T PF04826_consen 76 NALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLS 144 (254)
T ss_pred HHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHH
Confidence 999999988888887654 4777777655543222 8889999999999874 44445454 47999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q 007101 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 279 (618)
.++..++..++++|.+|+. ++...+.+...+++..++.+++.. +.++...++..+.|+..+
T Consensus 145 ~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 145 SGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999997 788888888889999999999864 678899999999999543
No 32
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.47 E-value=3.2e-14 Score=132.31 Aligned_cols=77 Identities=35% Similarity=0.546 Sum_probs=72.1
Q ss_pred HhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007101 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
..++...+++||+|+++++.|+|||.||++||.|||+|+.|+|.|+....|.+++.+.++|+.+|+|||||++.++.
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~ 112 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAG 112 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceeccc
Confidence 35666778999999999999999999999999999999999999999999999999999999999999999998764
No 33
>PHA02713 hypothetical protein; Provisional
Probab=99.47 E-value=7.2e-14 Score=147.10 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=68.9
Q ss_pred HhhhcCCCcccEEEEEC-CeEEehhHHHHhcCCHHHHHhhcCCCCCCC-CCceecCCCCHHHHHHHHHHHhCCcc
Q 007101 541 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFDEFCAF 613 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~~i~~~~~~~~~~~~~l~~~Yt~~~ 613 (618)
+.+++++.+|||++.++ |+.|+|||.|||++|+||++||+++|+|.. ..+|.|+++++++|+.+|+|+|||++
T Consensus 17 ~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i 91 (557)
T PHA02713 17 SNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI 91 (557)
T ss_pred HHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCC
Confidence 67899999999999997 899999999999999999999999999864 78999999999999999999999985
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.46 E-value=4.2e-14 Score=148.02 Aligned_cols=85 Identities=31% Similarity=0.466 Sum_probs=78.7
Q ss_pred CCcccchhHhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCc
Q 007101 533 PTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCA 612 (618)
Q Consensus 533 ~~~~~~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 612 (618)
........+.++..+.+|||++.+++++|+|||.||+++|+||++||+++++|+...+|.+.++++++++.+++|+|||+
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~ 99 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK 99 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce
Confidence 33444445789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 007101 613 FNLSS 617 (618)
Q Consensus 613 ~~~~~ 617 (618)
+.|++
T Consensus 100 i~i~~ 104 (571)
T KOG4441|consen 100 LEISE 104 (571)
T ss_pred EEech
Confidence 99875
No 35
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=5.2e-11 Score=126.42 Aligned_cols=385 Identities=20% Similarity=0.212 Sum_probs=253.0
Q ss_pred hHHHHHHHHHHHHHhccC--hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHH
Q 007101 76 DRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (618)
.+.++..-+..++.++++ ++ +. .+.++.|.+..++++. ..|+.|..+|..+...-.++
T Consensus 93 ~~~vr~k~~dviAeia~~~l~e--~W---Pell~~L~q~~~S~~~------------~~rE~al~il~s~~~~~~~~--- 152 (1075)
T KOG2171|consen 93 EPSVRHKLADVIAEIARNDLPE--KW---PELLQFLFQSTKSPNP------------SLRESALLILSSLPETFGNT--- 152 (1075)
T ss_pred chHHHHHHHHHHHHHHHhcccc--ch---HHHHHHHHHHhcCCCc------------chhHHHHHHHHhhhhhhccc---
Confidence 344667777777777773 22 00 2345666666666666 89999999999988332222
Q ss_pred HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHh-cCChHHHH----HhhcCCCHHHHHHHH
Q 007101 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLV----ELLEFTDTKVQRAAA 228 (618)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~~i~~L~----~ll~~~~~~v~~~a~ 228 (618)
..+.++.+..++.....+... .++..+++++...+...+..+..... ...+|.++ ..+..++......++
T Consensus 153 -~~~~~~~l~~lf~q~~~d~s~----~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l 227 (1075)
T KOG2171|consen 153 -LQPHLDDLLRLFSQTMTDPSS----PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSAL 227 (1075)
T ss_pred -cchhHHHHHHHHHHhccCCcc----hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHH
Confidence 224456666666655443222 68999999999888765422221111 12445444 445567777788899
Q ss_pred HHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhHHHHH--HhcCCHHHHHHhhcCCC
Q 007101 229 GALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEV--LAAGALQPVIGLLSSCC 304 (618)
Q Consensus 229 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~l~~L~~ll~~~~ 304 (618)
.+|..++...+....-... .++...+.+..+ -++.+|..|+.+|..++..-+...+.. .-..+++.++.++....
T Consensus 228 ~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~ 306 (1075)
T KOG2171|consen 228 EALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEE 306 (1075)
T ss_pred HHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcc
Confidence 9999998755544333332 245555666654 468999999999999987744432222 22335566666654211
Q ss_pred ----------------hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcch
Q 007101 305 ----------------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (618)
Q Consensus 305 ----------------~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (618)
......|..+|..++.+=+... +-.-+++.+-.++.+.++.-|.+++.+|+.++.+.....
T Consensus 307 ~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 307 DDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred cchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 1134456677777764432221 112246777778899999999999999999998755443
Q ss_pred hhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 007101 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (618)
.-.-..+++.+++.+++++++||.+|+.+++.++.+-.. .++...+..
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p--------------------------------~iqk~~~e~ 431 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP--------------------------------EIQKKHHER 431 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH--------------------------------HHHHHHHHh
Confidence 333345677888999999999999999999999855221 122334566
Q ss_pred hHHHHHHHHhhC-CHhHHHHHHHHHHhhcCCCc-cccceecCCchH-HHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 449 VLNHLLYLMRVA-EKGVQRRVALALAHLCSPDD-QRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 449 ~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
+.+.|+..+.+. ++.++..|+.++-|+...-. ....-+-.+.+. .|..++.++.+.+|+.+..+|...+....
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 777888888887 77999999999999975433 332223345566 45556678999999999999999987643
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.7e-11 Score=121.85 Aligned_cols=438 Identities=16% Similarity=0.145 Sum_probs=267.4
Q ss_pred CCCchhhhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhh-HHHHH-h---CCCHHHHHHhhcCCCCCc
Q 007101 46 TSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEV-VNWIV-E---GGAVPALVKHLQAPPTSE 120 (618)
Q Consensus 46 ~~~~~~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~-~---~g~v~~Lv~lL~~~~~~~ 120 (618)
.......+.|+..++.+.++|.+. |...+.-|..+|..++.+... .+.=+ . .-.+|.++++.+++++
T Consensus 117 I~s~~~~~~wpelLp~L~~~L~s~------d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp-- 188 (885)
T KOG2023|consen 117 IASTGGLQHWPELLPQLCELLDSP------DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP-- 188 (885)
T ss_pred eecccccccchhHHHHHHHHhcCC------cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--
Confidence 344455577888888888888776 333566788888888874321 11100 0 2358899999999877
Q ss_pred cccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHh-CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCch
Q 007101 121 ADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198 (618)
Q Consensus 121 ~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~-~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~ 198 (618)
.+|..|..++..+. ..+.. .+.. ...+..+..+-.+.+. +++.+.+.++..|..-.++
T Consensus 189 ----------kiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~~--------eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 189 ----------KIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDEDP--------EVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred ----------hHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCCH--------HHHHHHHHHHHHHHHhcHH
Confidence 99999999998887 33321 1111 1234444444433333 9999999999999874443
Q ss_pred hhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh--cCCHHHHHHhhcCCC--------------
Q 007101 199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSED-------------- 262 (618)
Q Consensus 199 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~-------------- 262 (618)
+-.-.-.++++.++...++.|.+|...||.....++. .+..+..+.. ..++|.|+.-+...+
T Consensus 249 -kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 249 -KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred -hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 1111224567788888888999999999999999997 4555554443 345666655332110
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh
Q 007101 263 ------------------------------------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (618)
Q Consensus 263 ------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 300 (618)
-.+|.-++.+|.-++.--. ..++. -++|.|-..|
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L 402 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHL 402 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHc
Confidence 0123333333333321111 11111 1456666667
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC--cchhhHhcCCH
Q 007101 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHNGGL 376 (618)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~l 376 (618)
.+..|.+++.+..+++.++. .+..-+.. ..++|.|+++|.+..+-||...||+|+..+..-. .+.+. -...+
T Consensus 403 ~~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~-f~pvL 478 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY-FKPVL 478 (885)
T ss_pred CcchhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh-hHHHH
Confidence 78899999999999999984 34444433 2478999999999999999999999999875321 11111 12345
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhcCCc-----chhHHHhh----------c--------------------------
Q 007101 377 VPLLKLLDSKNGSLQHNAAFALYGLADNED-----NVADFIRV----------G-------------------------- 415 (618)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~~~l~~~----------~-------------------------- 415 (618)
..|++.+-+++..|+++|+.++..+-.... ....+... +
T Consensus 479 ~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi 558 (885)
T KOG2023|consen 479 EGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI 558 (885)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH
Confidence 556666777899999999999887753211 11111100 0
Q ss_pred --ccccccc-------cchhhhhHHHHHHHHHHHHHH-------------------------------------------
Q 007101 416 --GVQKLQD-------GEFIVQATKDCVAKTLKRLEE------------------------------------------- 443 (618)
Q Consensus 416 --~~~~L~~-------~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 443 (618)
.+++|++ .....-++.+|+......+..
T Consensus 559 qiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 559 QILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred HHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 1111111 011122334454432211110
Q ss_pred -------------------HHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChh
Q 007101 444 -------------------KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPK 504 (618)
Q Consensus 444 -------------------~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 504 (618)
+..++++.-++..+.+.-|+||..+-..|+.++..-.....-.-.+.++.|-.-+...+..
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~is 718 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENIS 718 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhch
Confidence 0244566667778888889999999999999874432222222344566666556667778
Q ss_pred hhhhHHHHHHHhhhhhc
Q 007101 505 QQLDGAVALFKLANKAT 521 (618)
Q Consensus 505 v~~~a~~~L~~L~~~~~ 521 (618)
+-..|+|++..++....
T Consensus 719 v~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 719 VCNNAIWAIGEIALKMG 735 (885)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88999999999998654
No 37
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.41 E-value=2.5e-13 Score=111.61 Aligned_cols=76 Identities=30% Similarity=0.599 Sum_probs=66.2
Q ss_pred HhhhcCCCcccEEEEEC-CeEEehhHHHHhcCCHHHHHhhcCC-CCCCCCCceecCCCCHHHHHHHHHHHhCCccccC
Q 007101 541 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFDEFCAFNLS 616 (618)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~ 616 (618)
+++++.+.++|+++.++ +..|++||.+|+++|+||+.||.+. +.+.....|.++++++++|+.+++|+|+|++.++
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC
Confidence 46778889999999999 8999999999999999999999987 6666666899999999999999999999998765
No 38
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.6e-11 Score=120.50 Aligned_cols=353 Identities=17% Similarity=0.114 Sum_probs=225.4
Q ss_pred CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhC----CcHHHHHHHHhhccCCCCcccc
Q 007101 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAV 178 (618)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~----g~l~~L~~lL~~~~~~~~~~~~ 178 (618)
.++|.|..+|.+++. ..++.|..+|.+++ ++++.-+.-... -.+|.++.+.+.++.
T Consensus 128 elLp~L~~~L~s~d~------------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp------- 188 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDY------------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP------- 188 (885)
T ss_pred hHHHHHHHHhcCCcc------------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh-------
Confidence 468899999998887 67889999999999 655543332211 247788888888765
Q ss_pred hHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007101 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
.+|..|+.++.......... -...-..++..+..+..+.+++||...|.++..|....++. -.-.-.++++.++..-
T Consensus 189 -kiRs~A~~cvNq~i~~~~qa-l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t 265 (885)
T KOG2023|consen 189 -KIRSHAVGCVNQFIIIQTQA-LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT 265 (885)
T ss_pred -hHHHHHHhhhhheeecCcHH-HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc
Confidence 89999999998776533322 22223457788888888899999999999999998632221 1111246778888888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhHHHHHHh--cCCHHHHHHhhcCC---------------------------------
Q 007101 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSC--------------------------------- 303 (618)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~--------------------------------- 303 (618)
++.+++|..+|+.....++... ..+..+.. ..++|.|++-+..+
T Consensus 266 qd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~ 344 (885)
T KOG2023|consen 266 QDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH 344 (885)
T ss_pred cCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc
Confidence 8999999999999999998764 33222221 23555555432110
Q ss_pred -----------------------ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 007101 304 -----------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (618)
Q Consensus 304 -----------------------~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l 360 (618)
+|..|+-.+.+|.-++.. .+..+. .-++|.|-+.|.+.+..+|+++..+++.+
T Consensus 345 ~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAI 420 (885)
T KOG2023|consen 345 GNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAI 420 (885)
T ss_pred cCccccccccccccccccccccccccHhhccHHHHHHHHHh---hHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHH
Confidence 023333333333333311 111111 12455666666778999999999999999
Q ss_pred hcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC--cchhHHHhhcccccccccchhhhhHHHHHHHHH
Q 007101 361 AQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (618)
Q Consensus 361 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~ 438 (618)
+.+.-....-.-...++.|+.++.++.+-||...||+|...+... +....+
T Consensus 421 AEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~--------------------------- 473 (885)
T KOG2023|consen 421 AEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY--------------------------- 473 (885)
T ss_pred HHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh---------------------------
Confidence 975322211111235777999999999999999999999887331 111111
Q ss_pred HHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhc---CCChhhhhhHHHHHHH
Q 007101 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFK 515 (618)
Q Consensus 439 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~ 515 (618)
-..++..++..+-+++..||++||.+++.+-......-...-..++..|+..+. .+|-.+-..|..+|+.
T Consensus 474 -------f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 474 -------FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLAD 546 (885)
T ss_pred -------hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHH
Confidence 123556677777788999999999999988544332222112223333333332 3555666666666665
Q ss_pred hh
Q 007101 516 LA 517 (618)
Q Consensus 516 L~ 517 (618)
-.
T Consensus 547 sv 548 (885)
T KOG2023|consen 547 SV 548 (885)
T ss_pred HH
Confidence 44
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.39 E-value=2.2e-10 Score=113.22 Aligned_cols=346 Identities=14% Similarity=0.152 Sum_probs=237.3
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhc-----CChHHHHHhhcCCCHHHHHHHHHHH
Q 007101 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGAL 231 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~v~~~a~~~L 231 (618)
..+..++++|+....+ ++.++.+..+..+...++.....+.+. .....++.+|..+|.-+...++..|
T Consensus 53 ~y~~~~l~ll~~~~~~-------d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 53 QYVKTFVNLLSQIDKD-------DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 4577788888876654 899999999999998877655555543 3456777889888999999999999
Q ss_pred HHhhcCCcccHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHH
Q 007101 232 RTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQ 308 (618)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~ 308 (618)
..+....+.........-.++.+...++.+ +...+..++.+|..+... +..+..+...++++.|+.+|+.. +...+
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 999864443222111111334555666543 467788888999999766 56677777888999999999764 34778
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCC-------cchhhHhcCCHHHHH
Q 007101 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH-------NQAGIAHNGGLVPLL 380 (618)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~l~~~~~l~~L~ 380 (618)
..++.+++-++.. +.....+...++++.++++++. ..+.+.+-++.++.|+..... ....++..+. +.++
T Consensus 205 Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l 282 (429)
T cd00256 205 YQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTL 282 (429)
T ss_pred HHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHH
Confidence 8999999999754 4455556678999999999986 678888999999999987431 1123444444 4455
Q ss_pred HhhcC---CChhHHHHHHHHH-------HHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhH
Q 007101 381 KLLDS---KNGSLQHNAAFAL-------YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (618)
Q Consensus 381 ~ll~~---~~~~v~~~a~~~L-------~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (618)
+.|.. .|+++....-..- ..++.-+++..++.. |-+ +... .+....-..+...++... ...++
T Consensus 283 ~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s-g~L----~WSp-~H~se~FW~EN~~kf~~~-~~~ll 355 (429)
T cd00256 283 QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS-GRL----HWSP-VHKSEKFWRENADRLNEK-NYELL 355 (429)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc-CCc----cCCC-CCCCchHHHHHHHHHHhc-chHHH
Confidence 55533 3565544322222 222333333333322 211 1111 111222333344444332 36788
Q ss_pred HHHHHHHh-hCCHhHHHHHHHHHHhhcCC-CccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 451 NHLLYLMR-VAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 451 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
..|+.+|. +.++.+..-||.=++.++.. +..+.++-+.|+-..+.+++.++|++||.+|..|+..|.-+
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999995 45788888899999999855 45777777889999999999999999999999999988654
No 40
>PHA02790 Kelch-like protein; Provisional
Probab=99.39 E-value=2.5e-13 Score=141.01 Aligned_cols=74 Identities=9% Similarity=0.137 Sum_probs=64.9
Q ss_pred hhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceec--CCCCHHHHHHHHHHHhCCccccCC
Q 007101 542 QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 542 ~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~--~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
.++.++.+|||++.+ |+.|+|||.|||++|+|||+||+++|+|+.. +|.+ .++++++|+.+|+|+|||++.|++
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~ 90 (480)
T PHA02790 15 ALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS 90 (480)
T ss_pred HHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec
Confidence 456678899987655 5699999999999999999999999999965 5665 389999999999999999999875
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.37 E-value=1.9e-11 Score=102.07 Aligned_cols=119 Identities=28% Similarity=0.409 Sum_probs=110.7
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 007101 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (618)
Q Consensus 244 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (618)
.+.+.|+++.+++++++++..++..++++|++++..++.....+...|+++.++.++.+.++.++..++++|+|++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999999888888889999999999999999999999999999999998877
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 324 ~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
.....+.+.|+++.+++++.+.+..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777888889999999999999999999999999999873
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.35 E-value=2.4e-11 Score=101.54 Aligned_cols=117 Identities=37% Similarity=0.505 Sum_probs=109.8
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 007101 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (618)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (618)
+.+.|+++.+++++.++++.++..++++|.+++...+.....+.+.|+++.+++++.++++.++..++++|++++...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987788899999999999999999999999999999999999998877
Q ss_pred HHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 007101 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (618)
Q Consensus 283 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (618)
....+...|+++.+++++.+.+.++++.++++|.+++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7778888999999999999999999999999999986
No 43
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4e-10 Score=105.85 Aligned_cols=192 Identities=21% Similarity=0.230 Sum_probs=167.1
Q ss_pred cccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CCh
Q 007101 69 TFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP 147 (618)
Q Consensus 69 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~ 147 (618)
.+...+.+.+-+..|+.-|..++.+-++...+++.|++..++.++++.+. .+|..|+++|+..+ ++|
T Consensus 89 ~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~qNNP 156 (342)
T KOG2160|consen 89 ILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQNNP 156 (342)
T ss_pred ccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHhcCH
Confidence 34444557777889999999999999999999999999999999999888 99999999999999 999
Q ss_pred hhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC--CCHHHHH
Q 007101 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQR 225 (618)
Q Consensus 148 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~ 225 (618)
..+..+++.|+++.|+..+....+. .++..|+.+++.+...+++....+...++...|...+++ .+..+++
T Consensus 157 ~~Qe~v~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkr 229 (342)
T KOG2160|consen 157 KSQEQVIELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKR 229 (342)
T ss_pred HHHHHHHHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHH
Confidence 9999999999999999999966553 888999999999999999999999999999999999998 6688899
Q ss_pred HHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 007101 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 226 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (618)
.++..+..+........+.+...++...+..+....+.++...++.++..+...
T Consensus 230 K~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 230 KALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 999999999986666666666677777777788788888888888887776443
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.32 E-value=2.7e-10 Score=121.69 Aligned_cols=400 Identities=21% Similarity=0.240 Sum_probs=263.7
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHH
Q 007101 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (618)
Q Consensus 62 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (618)
.+..+.+.+. ++++.++..|+++|+++. +++..+.+ ++.+.+++.++++ .||..|+.++.
T Consensus 80 ~~n~l~kdl~--~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~------------~VRk~A~~~l~ 139 (526)
T PF01602_consen 80 IINSLQKDLN--SPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSP------------YVRKKAALALL 139 (526)
T ss_dssp HHHHHHHHHC--SSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSH------------HHHHHHHHHHH
T ss_pred HHHHHHHhhc--CCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCch------------HHHHHHHHHHH
Confidence 3444444332 336678999999999988 44444443 7888999998776 99999999999
Q ss_pred Hhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCC
Q 007101 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220 (618)
Q Consensus 142 ~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 220 (618)
++. .+|+.-. .. .++.+..+|.+.+. .++..|+.++..+ ..++.....+. ...+..+.+++...+
T Consensus 140 ~i~~~~p~~~~---~~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~ 205 (526)
T PF01602_consen 140 KIYRKDPDLVE---DE-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPD 205 (526)
T ss_dssp HHHHHCHCCHH---GG-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCS
T ss_pred HHhccCHHHHH---HH-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccc
Confidence 999 6666422 22 58899999977664 8999999999998 32332211111 234566666667889
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh
Q 007101 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (618)
Q Consensus 221 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 300 (618)
+-.+...++.|..++...+..... ..+++.+..++++.++.|...++.++..+....+ ....+++.|..++
T Consensus 206 ~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL 276 (526)
T PF01602_consen 206 PWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLL 276 (526)
T ss_dssp HHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHh
Confidence 999999999999888644443321 3467788888888899999999999999854422 2334688999999
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHH
Q 007101 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPL 379 (618)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L 379 (618)
.++++.++..++..|..++...+. .+ . .....+..+. +++..++..++..|.+++... +.. ..++.|
T Consensus 277 ~s~~~nvr~~~L~~L~~l~~~~~~---~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-n~~-----~Il~eL 344 (526)
T PF01602_consen 277 SSSDPNVRYIALDSLSQLAQSNPP---AV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANES-NVK-----EILDEL 344 (526)
T ss_dssp TSSSHHHHHHHHHHHHHHCCHCHH---HH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH-HHH-----HHHHHH
T ss_pred hcccchhehhHHHHHHHhhcccch---hh-h--hhhhhhheecCCCChhHHHHHHHHHhhccccc-chh-----hHHHHH
Confidence 999999999999999999865422 12 1 2233333444 889999999999999998632 211 146678
Q ss_pred HHhh-cCCChhHHHHHHHHHHHhhcC-CcchhHHHhhcccccccc-cchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007101 380 LKLL-DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 456 (618)
Q Consensus 380 ~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l 456 (618)
.+.+ ...+..++..++..+..++.. +......++ -.+..+.. +..........+.+.+.+- .......+..++..
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~-~l~~ll~~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~ 422 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVD-TLLKLLEISGDYVSNEIINVIRDLLSNN-PELREKILKKLIEL 422 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHH-HHHHHHHCTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHH
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHH-HHHHhhhhccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHH
Confidence 8888 445888999999999999743 222222221 11111111 1111122222222222211 11244578888888
Q ss_pred Hhh-CCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 457 MRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 457 l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+.+ .++.++..++|+++..+...+... .-...+..+...+...++.+|.....++..+....
T Consensus 423 l~~~~~~~~~~~~~wilGEy~~~~~~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 423 LEDISSPEALAAAIWILGEYGELIENTE--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HTSSSSHHHHHHHHHHHHHHCHHHTTTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHhhhcccCCcccccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhC
Confidence 887 578999999999999875443300 11224556666666777889999999999988764
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.32 E-value=2.1e-09 Score=106.36 Aligned_cols=321 Identities=14% Similarity=0.183 Sum_probs=220.4
Q ss_pred HHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhC-----CCHHHHHHhhcCCCCCccccCCCcch
Q 007101 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEG-----GAVPALVKHLQAPPTSEADRNLKPFE 129 (618)
Q Consensus 56 ~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-----g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (618)
...+..++.++... ...++....+..+.++.. ++.....|.+. .....++++|+.++.
T Consensus 52 ~~y~~~~l~ll~~~-----~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~----------- 115 (429)
T cd00256 52 GQYVKTFVNLLSQI-----DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ----------- 115 (429)
T ss_pred HHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch-----------
Confidence 34455566666554 233466777888888887 66666667664 466778888887665
Q ss_pred hHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007101 130 HEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
-+...++.+|..+. .++.........-.+..+...++...+. ..+..++.+|..|.. .+..|..+...++
T Consensus 116 -~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-------~~~~~~v~~L~~LL~-~~~~R~~f~~~~~ 186 (429)
T cd00256 116 -FIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-------DYVQTAARCLQMLLR-VDEYRFAFVLADG 186 (429)
T ss_pred -hHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-------chHHHHHHHHHHHhC-CchHHHHHHHccC
Confidence 88999999999998 4333211111111233455555544321 777888999999998 6778888888899
Q ss_pred hHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC-----
Q 007101 209 IPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSS----- 280 (618)
Q Consensus 209 i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~----- 280 (618)
++.|+.+|+.. +..++..++-+++.++. +++....+...+.++.++.+++ +..+.+.+-++.+|.|+...+
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~ 265 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREV 265 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccch
Confidence 99999999762 56899999999999998 5556666777899999999998 567889999999999997743
Q ss_pred -hhHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHH-------HHHHHhcC--------------Ch---------hhHH
Q 007101 281 -PNIKKEVLAAGALQPVIGLLSSC--CSESQREAAL-------LLGQFAAT--------------DS---------DCKV 327 (618)
Q Consensus 281 -~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~-------~L~~l~~~--------------~~---------~~~~ 327 (618)
......++..|+++.+-.+.... ++++....-. .+..+++- +| ++..
T Consensus 266 ~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~ 345 (429)
T cd00256 266 KKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENAD 345 (429)
T ss_pred hhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHH
Confidence 12334556667666555554432 3443322111 11112110 11 1222
Q ss_pred HHHhc--CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCcc-hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007101 328 HIVQR--GAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 328 ~l~~~--~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
.+-+. .++..|+++|. +.++.+..-||.=++.++++.+.+ ..+.+.|+=..+.+++.++|++|+..|+.++..|.
T Consensus 346 kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 346 RLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 23332 36678888885 568888888999999999976554 44555687778999999999999999999998774
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.28 E-value=8.3e-10 Score=117.93 Aligned_cols=387 Identities=21% Similarity=0.268 Sum_probs=266.9
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (618)
+...+.-+--.+..+.. +++.. .+ ++..+.+=|.+++. .++..|+++|++++ +++....
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~-~l----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~-- 114 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELL-IL----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP-- 114 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHH-HH----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH--
T ss_pred CHHHHHHHHHHHHHHhhcchhHH-HH----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH--
Confidence 44445555555566666 44422 22 36667777777666 89999999999988 4444333
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007101 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
.++.+.+++.+.+. .+|+.|+.++.++...+|+.- ... .++.+..++.++++.++..|+.++..+
T Consensus 115 ---l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 ---LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 36888888887765 999999999999998776532 222 578999999999999999999999999
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007101 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (618)
..++.....+. ...++.|.+++...++-.+..++++|..++...+..... ...++.+..++.+.++.+..+++.+
T Consensus 180 -~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 180 -KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRL 254 (526)
T ss_dssp -HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHH
Confidence 21232211121 234566677778899999999999999997766554311 3467888888888888999999999
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHH-HHHhhcCCChhHHHH
Q 007101 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHN 393 (618)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~-L~~ll~~~~~~v~~~ 393 (618)
+..+... +. .-..+++.|..++.++++.++..++.+|..++... .. .+. .... +..+..+.+..++..
T Consensus 255 i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~-~v~--~~~~~~~~l~~~~d~~Ir~~ 323 (526)
T PF01602_consen 255 IIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PP-AVF--NQSLILFFLLYDDDPSIRKK 323 (526)
T ss_dssp HHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HH-HHG--THHHHHHHHHCSSSHHHHHH
T ss_pred HHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--ch-hhh--hhhhhhheecCCCChhHHHH
Confidence 9988643 22 22446899999999999999999999999998754 12 222 2222 333344889999999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHH---hhhhHHHHHHHHhhCCHhHHHHHHH
Q 007101 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI---HGRVLNHLLYLMRVAEKGVQRRVAL 470 (618)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L~~ll~~~~~~v~~~a~~ 470 (618)
++.+|..++. +.|...+++. ..+.+.+ ......+..+...+..+...+ ....+..++.++...+..+...+..
T Consensus 324 ~l~lL~~l~~-~~n~~~Il~e-L~~~l~~--~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 324 ALDLLYKLAN-ESNVKEILDE-LLKYLSE--LSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp HHHHHHHH---HHHHHHHHHH-HHHHHHH--C--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred HHHHHhhccc-ccchhhHHHH-HHHHHHh--ccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHH
Confidence 9999999984 4444444331 1111100 001123444444444444444 3567888999999888888889999
Q ss_pred HHHhhcCCCccccceecCCchHHHHHHhcC-CChhhhhhHHHHHHHhhhhhc
Q 007101 471 ALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 471 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~ 521 (618)
.+.++....+.. ....+..|++.+.+ .+++++..++|.+...+....
T Consensus 400 ~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 400 VIRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIE 447 (526)
T ss_dssp HHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT
T ss_pred HHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccc
Confidence 999886443322 12258899988886 778889999999998888754
No 47
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.28 E-value=9.1e-12 Score=97.97 Aligned_cols=67 Identities=31% Similarity=0.562 Sum_probs=62.5
Q ss_pred cEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007101 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 551 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
|+++.++++.|++||.+|+++|+||++||.+++.+.....+.++++++++|+.+++|+|+|++.++.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~ 67 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE 67 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH
Confidence 6889999999999999999999999999999888877889999999999999999999999987764
No 48
>PHA03098 kelch-like protein; Provisional
Probab=99.26 E-value=6.3e-12 Score=133.85 Aligned_cols=68 Identities=21% Similarity=0.445 Sum_probs=63.9
Q ss_pred CCCcccEEEEE--CCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007101 546 NATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 546 ~~~~~Dv~~~~--~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
++.+||+++.+ +|++|+|||.||+++|+||++||.++|+ ..+|.+++ ++++|+.+|+|+|||++.++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~ 75 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS 75 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH
Confidence 78899999998 9999999999999999999999999987 57899999 999999999999999998864
No 49
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.25 E-value=3.1e-09 Score=106.39 Aligned_cols=302 Identities=15% Similarity=0.113 Sum_probs=200.7
Q ss_pred HHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHH---Hhc-CChhhH----HHHHh
Q 007101 84 THVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG---LLA-VKPEHQ----QLIVD 155 (618)
Q Consensus 84 ~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~---~l~-~~~~~~----~~~~~ 155 (618)
+....+++..++++..+...|+.+.+.-++...+. .+|.+|..++. ++. +++... ....+
T Consensus 161 ~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~------------~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d 228 (678)
T KOG1293|consen 161 VSRAAHLSSTKDHQLILCNAGILEKINILLMYLSS------------KLRLAALLCLSRGDRILRNNPLGSMFLLGLLKD 228 (678)
T ss_pred hhhhccccccchhhheeccccchhhHHHHHHhhhH------------HHHHHHHHHhhccceeeecCchhHHHHHHHHhc
Confidence 33344455567888888888888887777766566 88999999999 777 555543 33345
Q ss_pred CCcHH--HHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchh-----hHHHHhcC----------------C----
Q 007101 156 NGALS--HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-----KTRVRMEG----------------G---- 208 (618)
Q Consensus 156 ~g~l~--~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~-----~~~~~~~~----------------~---- 208 (618)
.|+.+ .+.+++++.+. ..+..++.++.+++..+-.. ...+.+.| +
T Consensus 229 ~~v~~r~~v~rL~k~~~~--------s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l 300 (678)
T KOG1293|consen 229 KGVNIRCVVTRLLKDPDF--------SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTL 300 (678)
T ss_pred cccchhhhhhhhhhCCCc--------cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeeh
Confidence 56665 55667777665 66677888888887644100 00111111 0
Q ss_pred -----hHHHHH-hhcC-CCH-------HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHH---------------------
Q 007101 209 -----IPPLVE-LLEF-TDT-------KVQRAAAGALRTLAFKNDENKNQIVECNALPT--------------------- 253 (618)
Q Consensus 209 -----i~~L~~-ll~~-~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~--------------------- 253 (618)
+-.+.. +... ..+ +.-..-+.+.+.+....+.++....+...++.
T Consensus 301 ~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~ 380 (678)
T KOG1293|consen 301 DHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTES 380 (678)
T ss_pred hhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHH
Confidence 000000 1100 011 11122233334444444444444333222111
Q ss_pred -HHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhc
Q 007101 254 -LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (618)
Q Consensus 254 -L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (618)
+..+....+...+.+++-++.+++..-...+..+-...+..++++++.+++..+...++.++.|+...-.+.+..++..
T Consensus 381 ~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ 460 (678)
T KOG1293|consen 381 HLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN 460 (678)
T ss_pred HHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc
Confidence 1111113466778888888888877655555555556789999999999999999999999999998888889999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhh--HhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC
Q 007101 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI--AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (618)
Q Consensus 333 ~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l--~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (618)
|++..+.+++.+.++.++..+.|+|.++..+.+...+. ...-+...+..+.+++++.|++.+...|.|+..+.
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999877665433 33333445778889999999999999999998664
No 50
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.3e-08 Score=103.34 Aligned_cols=345 Identities=15% Similarity=0.106 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007101 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
.....|+.+++.++ .-|. +..|-|+..|.+.-....+. .+++.++.+|+.+|.+-.+-...-....+
T Consensus 105 ~~~s~Aaq~va~IA~~ElP~--------n~wp~li~~lv~nv~~~~~~---~~k~~slealGyice~i~pevl~~~sN~i 173 (859)
T KOG1241|consen 105 RRPSSAAQCVAAIACIELPQ--------NQWPELIVTLVSNVGEEQAS---MVKESSLEALGYICEDIDPEVLEQQSNDI 173 (859)
T ss_pred CccchHHHHHHHHHHhhCch--------hhCHHHHHHHHHhcccccch---HHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence 66668888888888 3333 33566666555543322221 58899999999999854443111122345
Q ss_pred hHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcccHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007101 209 IPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 209 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
+..++.-.+. ++..+|..|+.+|.+-......+-..=.+ .=+++..++.-++++.+++..|..||..+..-.-+..+
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667766654 56889999999999876422212111112 22345566777899999999999999999765444445
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhH---------------HHHH---hcCChHHHHHhhCC---
Q 007101 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK---------------VHIV---QRGAVRPLIEMLQS--- 344 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---------------~~l~---~~~~~~~L~~lL~~--- 344 (618)
.-+....++.-+..+.+.++++...+...-++++...-+.. ..+. -.+++|.|+++|..
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 55555567777777888899999888888888873221110 0011 13577888888753
Q ss_pred ----CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccc
Q 007101 345 ----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 420 (618)
Q Consensus 345 ----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L 420 (618)
++.....+|..+|.-+++...+ .++. .+++-+-+-+++++++-++.++.+++.+..+++.....
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D--~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt--------- 401 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGD--DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLT--------- 401 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcc--cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhh---------
Confidence 2344566666666666653222 1111 34444555778899999999999999998776442111
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccc--cceecCCchHHHHHHh
Q 007101 421 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR--TIFIDGGGLELLLGLL 498 (618)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~L~~ll 498 (618)
.+-.+.++.++.++.++.--++..+.|+|+.++..-... ........++.|++-+
T Consensus 402 -----------------------~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL 458 (859)
T KOG1241|consen 402 -----------------------PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL 458 (859)
T ss_pred -----------------------HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh
Confidence 122357888999999999899999999999998554311 1112334445555444
Q ss_pred cCCChhhhhhHHHHHHHhhhhhcc
Q 007101 499 GSTNPKQQLDGAVALFKLANKATT 522 (618)
Q Consensus 499 ~~~~~~v~~~a~~~L~~L~~~~~~ 522 (618)
. +.|.+-..+||++.+|+.+..-
T Consensus 459 ~-DePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 459 N-DEPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred h-hCchHHHHHHHHHHHHHHHHHH
Confidence 3 5689999999999999987543
No 51
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.8e-08 Score=100.10 Aligned_cols=435 Identities=14% Similarity=0.132 Sum_probs=253.8
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHhccC--hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007101 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
|.++..|.+........ .++..++.+|+.+|.+ |+.... ....++..++........+. .+|..|+
T Consensus 128 p~li~~lv~nv~~~~~~-~~k~~slealGyice~i~pevl~~-~sN~iLtaIv~gmrk~e~s~----------~vRLaa~ 195 (859)
T KOG1241|consen 128 PELIVTLVSNVGEEQAS-MVKESSLEALGYICEDIDPEVLEQ-QSNDILTAIVQGMRKEETSA----------AVRLAAL 195 (859)
T ss_pred HHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCCHHHHHH-HHhHHHHHHHhhccccCCch----------hHHHHHH
Confidence 44555555443322222 4778889999999984 552211 12457777787776655432 8999999
Q ss_pred HHHHHhc-CCh-hhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007101 138 FALGLLA-VKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 138 ~~L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
.+|.|-- ... -+....-..-++...+..-+.++. +++..|+.||..+..-.-+.-...........-+.-
T Consensus 196 ~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~--------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~a 267 (859)
T KOG1241|consen 196 NALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE--------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAA 267 (859)
T ss_pred HHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998765 111 111111112234444444444443 899999999998886444333323333344555666
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccH---HHHHh---------------cCCHHHHHHhhcC--C-----CHHHHHHHH
Q 007101 216 LEFTDTKVQRAAAGALRTLAFKNDENK---NQIVE---------------CNALPTLILMLRS--E-----DSAIHYEAV 270 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~---------------~~~~~~L~~ll~~--~-----~~~v~~~a~ 270 (618)
+++++++|...+...-+++|...-+.. ....+ .+++|.|+++|.. + +-.....|.
T Consensus 268 mks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg 347 (859)
T KOG1241|consen 268 MKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAG 347 (859)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHH
Confidence 788999999999998888885211100 11111 2567888888863 1 234677777
Q ss_pred HHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHH
Q 007101 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 350 (618)
Q Consensus 271 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~ 350 (618)
.||.-++....+ .++. .+++.+-+-+++++|+-+..++.+++.+-.+....+..-.-.+.+|.++.++.++.-.++
T Consensus 348 ~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~Vk 423 (859)
T KOG1241|consen 348 VCLMLFAQCVGD---DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVK 423 (859)
T ss_pred HHHHHHHHHhcc---cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhc
Confidence 777777543221 2222 355666667788999999999999999987766666666668899999999999999999
Q ss_pred HHHHHHHHHhhcCCCcc--hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC-----Ccc-----hhHHHhhcccc
Q 007101 351 EMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-----EDN-----VADFIRVGGVQ 418 (618)
Q Consensus 351 ~~a~~~L~~l~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~-----~~~l~~~~~~~ 418 (618)
..+.|+++.++..-... ........+..++.-++ ..+++..+++|++.+|+.. ..+ ...+.+ ..+.
T Consensus 424 dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~-~ii~ 501 (859)
T KOG1241|consen 424 DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE-AIIG 501 (859)
T ss_pred chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH-HHHH
Confidence 99999999999754321 12222233444554444 4789999999999999832 111 000111 1122
Q ss_pred cccccchh---hh-hHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHh-----hC----CHhHHHHHHHHHHh
Q 007101 419 KLQDGEFI---VQ-ATKDCVAKTLKRLEEK-----------IHGRVLNHLLYLMR-----VA----EKGVQRRVALALAH 474 (618)
Q Consensus 419 ~L~~~~~~---~~-~~~~~~~~~~~~~~~~-----------~~~~~l~~L~~ll~-----~~----~~~v~~~a~~~L~~ 474 (618)
.|+..... .+ .++.....++..+... +..-++.+|-+.+. .. -.++|..-|.+|..
T Consensus 502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~ 581 (859)
T KOG1241|consen 502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQS 581 (859)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHH
Confidence 22221111 11 1222222222222111 11122222222222 11 24567777778887
Q ss_pred hcCCCccccceecCCchHHHHHHhcC-CChhhhhhHHHHHHHhhhhh
Q 007101 475 LCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 475 l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~ 520 (618)
+......+..-.....+..|++++++ ++.-+.+.|.-++..++.+.
T Consensus 582 i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~L 628 (859)
T KOG1241|consen 582 IIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESL 628 (859)
T ss_pred HHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 75433222222345578889999988 44456677777777666543
No 52
>PTZ00429 beta-adaptin; Provisional
Probab=99.11 E-value=3.2e-07 Score=98.31 Aligned_cols=386 Identities=13% Similarity=0.038 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (618)
|.+.+.-.--.+.+.+. +++..- + ++..|.+=+.++++ .+|-.|+++|+.+-.. +..+
T Consensus 81 d~elKKLvYLYL~~ya~~~pelal-L----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~~-~i~e--- 139 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARLQPEKAL-L----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRVS-SVLE--- 139 (746)
T ss_pred CHHHHHHHHHHHHHHcccChHHHH-H----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCcH-HHHH---
Confidence 44555555556666666 444321 1 25566666666555 8999999999877632 2211
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007101 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
-.++.+.+.+.+.+. -++..|+.++.++...+++ .+...+.++.|.+++.+.++.|..+|+.+|..+
T Consensus 140 --~l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 140 --YTLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred --HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 134566666766554 8999999999999886664 234567889999999999999999999999999
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007101 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (618)
...++... -...+.+..|+..+.+-++=.+...+.+|....-.++ .. ...++..+...|++.++.+.-.|+.+
T Consensus 207 ~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~---~e--~~~il~~l~~~Lq~~N~AVVl~Aik~ 279 (746)
T PTZ00429 207 NDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK---ES--AETLLTRVLPRMSHQNPAVVMGAIKV 279 (746)
T ss_pred HHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc---HH--HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 86444322 2223456667777776666667777777755322211 11 12467778888899999999999999
Q ss_pred HHHHhcCC-hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHH
Q 007101 315 LGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393 (618)
Q Consensus 315 L~~l~~~~-~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 393 (618)
+.++.... +....... ..+...++.+ .++++.++..++..+..+.... ..+.... +..+.-..++ +..++..
T Consensus 280 il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~---P~lf~~~-~~~Ff~~~~D-p~yIK~~ 352 (746)
T PTZ00429 280 VANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIF---PNLLRTN-LDSFYVRYSD-PPFVKLE 352 (746)
T ss_pred HHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC---HHHHHHH-HHhhhcccCC-cHHHHHH
Confidence 99987432 22222111 1233556665 4567889999888887776633 2222221 3333333344 4458999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHH---HHhhhhHHHHHHHHhhCCHhHHHHHHH
Q 007101 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE---KIHGRVLNHLLYLMRVAEKGVQRRVAL 470 (618)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~v~~~a~~ 470 (618)
.+.+|..|+. ++|...+++. ..+...+. .... ..-....+.++.. .....++..|+.++..... +..+++.
T Consensus 353 KLeIL~~Lan-e~Nv~~IL~E-L~eYa~d~--D~ef-~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~-~v~e~i~ 426 (746)
T PTZ00429 353 KLRLLLKLVT-PSVAPEILKE-LAEYASGV--DMVF-VVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPE-LLPQVVT 426 (746)
T ss_pred HHHHHHHHcC-cccHHHHHHH-HHHHhhcC--CHHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCch-hHHHHHH
Confidence 9999999984 4555555432 11111111 1111 1111222222222 2356788889999876543 4557788
Q ss_pred HHHhhcCCCccccceecCCchHHHHHHh---cCCChhhhhhHHHHHHHhhhhhc
Q 007101 471 ALAHLCSPDDQRTIFIDGGGLELLLGLL---GSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 471 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
++.++....... ..+..|+..+ .-.+++.|...+|.|...+....
T Consensus 427 vik~IlrkyP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 427 AAKDIVRKYPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE 474 (746)
T ss_pred HHHHHHHHCccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh
Confidence 888886433322 1456666543 23677888888999999887654
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2e-08 Score=103.14 Aligned_cols=222 Identities=18% Similarity=0.192 Sum_probs=177.7
Q ss_pred hhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcC-CCCCccccCCCcchh
Q 007101 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQA-PPTSEADRNLKPFEH 130 (618)
Q Consensus 53 ~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~~~~~~~~ 130 (618)
-++...||.++.+|+.- .+.+++..|+++|.+++. -|.....+++.++||.|+.-|.. ...
T Consensus 207 fpv~slvp~Lv~LL~~E-----~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi------------ 269 (1051)
T KOG0168|consen 207 FPVKSLVPVLVALLSHE-----HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI------------ 269 (1051)
T ss_pred ccHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh------------
Confidence 34556777777777764 356799999999999999 79999999999999999986654 444
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
+|.++++.+|-.|+... -.++.+.|++-..+.+|.--.. ..++.|+.+..|.|..-..-...++ ...+|
T Consensus 270 DvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v-~ealP 338 (1051)
T KOG0168|consen 270 DVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFV-MEALP 338 (1051)
T ss_pred HHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHH-HHHHH
Confidence 89999999999999322 2567889999999999988776 8999999999999974332222222 35799
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcC---CcccHHHHHhcCCHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhH
Q 007101 211 PLVELLEFTDTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNI 283 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~ 283 (618)
.|..+|...|....+.++-++..++.. .++.-+.++..|++....+++.-. +..+....++.|..++.+++..
T Consensus 339 lL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 339 LLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHH
Confidence 999999999999999999999988764 456677788899999999988733 3456677788899999888888
Q ss_pred HHHHHhcCCHHHHHHhhcC
Q 007101 284 KKEVLAAGALQPVIGLLSS 302 (618)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~~ 302 (618)
...+...++...|..+|..
T Consensus 419 ~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 419 FRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHhhHHHHHHHHHhc
Confidence 8888888888888888864
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=99.10 E-value=5.6e-07 Score=96.48 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHH
Q 007101 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (618)
++.++-.|+++|+.+-. ++..+. .++.+.+.|.+.++ -||..|+-++.++. .+|+ .+.
T Consensus 118 Np~IRaLALRtLs~Ir~-~~i~e~-----l~~~lkk~L~D~~p------------YVRKtAalai~Kly~~~pe---lv~ 176 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV-SSVLEY-----TLEPLRRAVADPDP------------YVRKTAAMGLGKLFHDDMQ---LFY 176 (746)
T ss_pred CHHHHHHHHHHHHcCCc-HHHHHH-----HHHHHHHHhcCCCH------------HHHHHHHHHHHHHHhhCcc---ccc
Confidence 55566666666665443 222221 24556667766665 99999999999998 5554 234
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007101 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
..+.++.|..+|.+.+. .+...|+.+|..+...++.. .-...+.+..++..+...++-.+...+.+|...
T Consensus 177 ~~~~~~~L~~LL~D~dp--------~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNP--------VVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred ccchHHHHHHHhcCCCc--------cHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 56788999998887665 89999999999998765532 122244566677777666777777777777543
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHH
Q 007101 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 313 (618)
. +...... ..++..+...|++.++.|...|++++.++.... +....... ..+-++++.++ +++++++.-++.
T Consensus 247 ~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr 319 (746)
T PTZ00429 247 R---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCK 319 (746)
T ss_pred C---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHH
Confidence 2 3222222 245777888899999999999999999996542 22222211 11234555554 455677777776
Q ss_pred HHHHHhc
Q 007101 314 LLGQFAA 320 (618)
Q Consensus 314 ~L~~l~~ 320 (618)
.+..+..
T Consensus 320 ~I~~i~~ 326 (746)
T PTZ00429 320 NIHALLV 326 (746)
T ss_pred HHHHHHH
Confidence 6655553
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.5e-07 Score=96.15 Aligned_cols=285 Identities=15% Similarity=0.181 Sum_probs=216.9
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHH
Q 007101 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (618)
-|+.|+.-+.+.+. ++=|+.|++.|-.++ .++|..+.. .++++++..|++...++ ++..+
T Consensus 23 TI~kLcDRvessTL-----------~eDRR~A~rgLKa~s--rkYR~~Vga-~Gmk~li~vL~~D~~D~------E~ik~ 82 (970)
T KOG0946|consen 23 TIEKLCDRVESSTL-----------LEDRRDAVRGLKAFS--RKYREEVGA-QGMKPLIQVLQRDYMDP------EIIKY 82 (970)
T ss_pred HHHHHHHHHhhccc-----------hhhHHHHHHHHHHHH--HHHHHHHHH-cccHHHHHHHhhccCCH------HHHHH
Confidence 47777877777665 266889999998877 556666654 45899999999887654 99999
Q ss_pred HHHHHHHhhhcCc------hhh----------H-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHHH
Q 007101 185 AADAITNLAHENS------SIK----------T-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIV 246 (618)
Q Consensus 185 a~~~L~~L~~~~~------~~~----------~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~ 246 (618)
++.++.++...++ ..+ . .+...+.|..++..+...|-.||..+...+..+....+ +.++.+.
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999987552 111 1 22235788999999999999999999999999977544 4455544
Q ss_pred -hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC---C-hhHHHHHHHHHHHHhcC
Q 007101 247 -ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---C-SESQREAALLLGQFAAT 321 (618)
Q Consensus 247 -~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~-~~~~~~a~~~L~~l~~~ 321 (618)
..-++..++.+|.+..+.+|..++-.|..++.+++...+.+.-.+++..|..++... + .-+...++..|-|+...
T Consensus 163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999998877777788999999999753 2 24678888999999988
Q ss_pred ChhhHHHHHhcCChHHHHHhhCC---CCH--------H--HHHHHHHHHHHhhcCC-------CcchhhHhcCCHHHHHH
Q 007101 322 DSDCKVHIVQRGAVRPLIEMLQS---PDV--------Q--LREMSAFALGRLAQDM-------HNQAGIAHNGGLVPLLK 381 (618)
Q Consensus 322 ~~~~~~~l~~~~~~~~L~~lL~~---~~~--------~--v~~~a~~~L~~l~~~~-------~~~~~l~~~~~l~~L~~ 381 (618)
+..+...+.+.+.+|.|..+|.. .+. + -...++.++..+..-. .++..+...+++..|..
T Consensus 243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence 88889999999999999988853 221 1 1223445555554421 22346777888999998
Q ss_pred hhcCC--ChhHHHHHHHHHHHhhcCCcchh
Q 007101 382 LLDSK--NGSLQHNAAFALYGLADNEDNVA 409 (618)
Q Consensus 382 ll~~~--~~~v~~~a~~~L~~l~~~~~~~~ 409 (618)
++.++ ..+|+..+.-++.+..++....+
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ 352 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQ 352 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHH
Confidence 88665 56888899999999886644333
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.2e-08 Score=94.27 Aligned_cols=184 Identities=23% Similarity=0.295 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
+-+..|+.-|..+++ +-++...+...|++..++.++++++..+|..|++++..++..+|..+..+++.|+++.|+.++.
T Consensus 98 e~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 98 EDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 777888888888888 5666777888999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 007101 260 S-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (618)
Q Consensus 260 ~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~ 336 (618)
+ .+..++..|+.+++.+.+.++.....+...++...|..++.++ +...++.++..+..+..........+...++..
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR 256 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence 4 4567889999999999999998888899988999999999984 567788999999999877666666555667777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007101 337 PLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 337 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
.+..+....+..+.+.+..++..+....
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 7777777888899999988888876543
No 57
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.07 E-value=1.3e-08 Score=97.67 Aligned_cols=275 Identities=19% Similarity=0.265 Sum_probs=208.0
Q ss_pred HHHHhcCChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 007101 201 TRVRMEGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~ 277 (618)
..+...|++..|++++..++. .++..+.+.|-.+.. .+|++.+...| +..++.+.+ ...++.....+.+|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 456678999999999998874 468899999999884 78888888876 666666666 456788899999999999
Q ss_pred cCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHH
Q 007101 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356 (618)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~ 356 (618)
.++++..+.++..|++..++-.+...++.+.+.++.+|+|++-+. ...++.+++..+-..|..+-.+.|.-.|..||.+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998543 3456677888888888888888899999999999
Q ss_pred HHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHH
Q 007101 357 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 436 (618)
Q Consensus 357 L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~ 436 (618)
.+-|+.+.+....+...+.+..+..++.+-++.- ++++... ..+ |
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd---~aQ-G--------------------- 375 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHD---YAQ-G--------------------- 375 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhh---hhc-c---------------------
Confidence 9999998777667777777665555555544421 1111000 000 0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcC--CC-ccccceecCCchHHHHHHhcCCChhhhhhHHHHH
Q 007101 437 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (618)
Q Consensus 437 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 513 (618)
-..+.+.+|+++|.+...+.|.-++.-++.=+. .. .....|-+-|+++.|.++..++++-.-..|..+|
T Consensus 376 --------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseAL 447 (832)
T KOG3678|consen 376 --------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEAL 447 (832)
T ss_pred --------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 122467789999997766666655554443321 12 2335667889999999999999888888999999
Q ss_pred HHhhhhhc
Q 007101 514 FKLANKAT 521 (618)
Q Consensus 514 ~~L~~~~~ 521 (618)
.-+....+
T Consensus 448 tviGEEVP 455 (832)
T KOG3678|consen 448 TVIGEEVP 455 (832)
T ss_pred HHhccccC
Confidence 98887644
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.00 E-value=2.9e-08 Score=95.25 Aligned_cols=277 Identities=21% Similarity=0.250 Sum_probs=203.1
Q ss_pred hHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCc
Q 007101 96 VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCS 175 (618)
Q Consensus 96 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~ 175 (618)
.+..+...|++..|++++..++... .||..|++.|..+.. .++++.++..| +..++.+.+.....
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et----------~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~--- 236 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLET----------SVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPV--- 236 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhH----------HHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcH---
Confidence 3456677899999999999988732 679999999988773 35677788777 77777777665442
Q ss_pred ccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHH
Q 007101 176 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 254 (618)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L 254 (618)
+..+..+.+|.++..++++....++..|++..++..++..++.+.+.++.+|.|++-+ ..+.+..+++..+.+.|
T Consensus 237 ----e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWL 312 (832)
T KOG3678|consen 237 ----ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWL 312 (832)
T ss_pred ----HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhh
Confidence 8899999999999999999999999999999999999999999999999999999864 34567788888888999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 007101 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (618)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~ 334 (618)
..+..+.++-++.+||-++..++.. .+....+...|.+..+-.++.+.++.. ++....+.. .-.....
T Consensus 313 F~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~a-QG~~~d~ 380 (832)
T KOG3678|consen 313 FPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYA-QGRGPDD 380 (832)
T ss_pred hhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhh-ccCChHH
Confidence 9988888889999999999999665 555566667777666555555544422 111101100 0011235
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCCcc-hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007101 335 VRPLIEMLQSPDVQLREMSAFALGRLAQ--DMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 335 ~~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
++.|+.+|.+...+.+..++.-++.=+. ...++ ..+.+-|.|+.|-++..+++..-...|-.+|.-+-.
T Consensus 381 LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 381 LQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 7888888887766666555544443332 22333 335566889999999988877666777777776653
No 59
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.1e-06 Score=86.88 Aligned_cols=333 Identities=16% Similarity=0.192 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHH
Q 007101 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (618)
Q Consensus 55 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (618)
....++.+++.+.+.-- -+| +..|++.|..+++ ++|..++. .++++|++.|+.+.. ||++..
T Consensus 20 ~aETI~kLcDRvessTL--~eD---RR~A~rgLKa~sr--kYR~~Vga-~Gmk~li~vL~~D~~----------D~E~ik 81 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTL--LED---RRDAVRGLKAFSR--KYREEVGA-QGMKPLIQVLQRDYM----------DPEIIK 81 (970)
T ss_pred HHhHHHHHHHHHhhccc--hhh---HHHHHHHHHHHHH--HHHHHHHH-cccHHHHHHHhhccC----------CHHHHH
Confidence 45567778887766421 123 4467777777764 55665554 458999999988766 359999
Q ss_pred HHHHHHHHhc-CCh------h----------hHHHHH-hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcC
Q 007101 135 GSAFALGLLA-VKP------E----------HQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN 196 (618)
Q Consensus 135 ~a~~~L~~l~-~~~------~----------~~~~~~-~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~ 196 (618)
.++.++.++. .++ . ..+.++ ..+.|..++..+...+- .+|.+++..|.++...-
T Consensus 82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--------~VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--------HVRLYAIQLLSALLSCR 153 (970)
T ss_pred HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--------hhhhHHHHHHHHHHhcC
Confidence 9999999998 331 1 112233 45788888888888765 89999999999987654
Q ss_pred c-hhhHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC----CHHHHHHHH
Q 007101 197 S-SIKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE----DSAIHYEAV 270 (618)
Q Consensus 197 ~-~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~----~~~v~~~a~ 270 (618)
+ +.+..+.. .-+|..++.+|.+....+|-.++..|..++.+++..++.++-.+++..|..++..+ ..-|...|+
T Consensus 154 ~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL 233 (970)
T KOG0946|consen 154 PTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL 233 (970)
T ss_pred CHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 4 44554443 57899999999998889999999999999998888888888889999999999842 236889999
Q ss_pred HHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--------ChhHHH-----HHHHHHHHHhcCC------hhhHHHHHh
Q 007101 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------CSESQR-----EAALLLGQFAATD------SDCKVHIVQ 331 (618)
Q Consensus 271 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--------~~~~~~-----~a~~~L~~l~~~~------~~~~~~l~~ 331 (618)
..|-||...+..+...+.+.+.+|.|.++|... .|..++ .++.++..+.+-+ ..+.+.+..
T Consensus 234 ~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 234 ILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 999999999888888888899999999888532 233322 3444555554211 234456778
Q ss_pred cCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCC-CcchhhHhcCC------HH----HHHHhhcC-CChhHHHHHHHH
Q 007101 332 RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDM-HNQAGIAHNGG------LV----PLLKLLDS-KNGSLQHNAAFA 397 (618)
Q Consensus 332 ~~~~~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~------l~----~L~~ll~~-~~~~v~~~a~~~ 397 (618)
.+++..|+.++-++ ..+++..+..++.++.+++ .++..+....+ .+ .+..+..+ .....|.+++++
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 89999999988775 5678888889999988754 44544433211 11 13334444 466788888888
Q ss_pred HHHhh-cCCcchhHHHh
Q 007101 398 LYGLA-DNEDNVADFIR 413 (618)
Q Consensus 398 L~~l~-~~~~~~~~l~~ 413 (618)
+..+. .+.+....++.
T Consensus 394 f~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 394 FRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHhcchhhHHHHHH
Confidence 87764 55555555544
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.94 E-value=2.6e-07 Score=96.26 Aligned_cols=404 Identities=20% Similarity=0.168 Sum_probs=225.5
Q ss_pred hHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChh-hHH
Q 007101 73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPE-HQQ 151 (618)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~ 151 (618)
.+.|.+++.+|+.++..+..+-...-..--..+++.|++-|+.. -.|..|.+++..++.++- .--
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--------------iTRl~AvkAlt~Ia~S~l~i~l 645 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--------------ITRLTAVKALTLIAMSPLDIDL 645 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--------------hHHHHHHHHHHHHHhccceeeh
Confidence 46788899999998887765311110011134566666666543 458899999999995443 221
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (618)
.-+-..+++.+...++.... ..+..++.++-.|.......-..-.....+..+..++..++-.+-..|..+|
T Consensus 646 ~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L 717 (1233)
T KOG1824|consen 646 SPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFL 717 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 22234568888888888765 6666666666666653222111111122344455566666777777788788
Q ss_pred HHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHH------------------------------------------HHHHH
Q 007101 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSA------------------------------------------IHYEA 269 (618)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~------------------------------------------v~~~a 269 (618)
..+....+ ..-.-....+++.++.+++++--. +...|
T Consensus 718 ~tl~~~~p-s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa 796 (1233)
T KOG1824|consen 718 TTLAIIQP-SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQA 796 (1233)
T ss_pred HHHHhccc-HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHH
Confidence 77776333 222333344566666666543210 01111
Q ss_pred HH----HHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC
Q 007101 270 VG----VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (618)
Q Consensus 270 ~~----~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~ 343 (618)
.. |.+.|+...++. .......++.=+.++ +..++..|...++.+-..-+. .-..++...+++.+.
T Consensus 797 ~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 797 YYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFN 867 (1233)
T ss_pred HHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcC
Confidence 11 111111110000 001122233223322 344566666677776432221 112345567888888
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCCh--hHHHHHH-HHHHHhhcC--CcchhHHHhhcccc
Q 007101 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG--SLQHNAA-FALYGLADN--EDNVADFIRVGGVQ 418 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~a~-~~L~~l~~~--~~~~~~l~~~~~~~ 418 (618)
+++.+++.+|..||++++.++-+ ..++.++..+.+... .+...++ .+|..-+.+ .+....++.
T Consensus 868 sp~edvksAAs~ALGsl~vgnl~-------~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~----- 935 (1233)
T KOG1824|consen 868 SPSEDVKSAASYALGSLAVGNLP-------KYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWA----- 935 (1233)
T ss_pred CChHHHHHHHHHHhhhhhcCchH-------hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHH-----
Confidence 99999999999999999875422 234444444443211 1111111 111111111 111111110
Q ss_pred cccc-cchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHH
Q 007101 419 KLQD-GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (618)
Q Consensus 419 ~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (618)
.|.. ..-.....+..+++.+.++.-.-...++|.|-..++++.+..|..++.++..........--......+..++.+
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~ 1015 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKL 1015 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHH
Confidence 0000 011122345566667777777778889999999999999999999988887776665555444455667889999
Q ss_pred hcCCChhhhhhHHHHHHHhhhhh
Q 007101 498 LGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+++++.+||..|..++...+++.
T Consensus 1016 ~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1016 LRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HhCCchhHHHHHHHHHHHHHccC
Confidence 99999999999999999888874
No 61
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=9.2e-08 Score=101.23 Aligned_cols=416 Identities=18% Similarity=0.131 Sum_probs=275.4
Q ss_pred chhhhhhhhhhhccccCCCCCchhhhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc---ChhhHHHHHhCC
Q 007101 28 GDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK---NEEVVNWIVEGG 104 (618)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~g 104 (618)
..|+++|+++.++...+......+.+... ..++..+.+... +++| .++..|...+.++.. .+.. ....
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~~L~~-Ddqd-sVr~~a~~~~~~l~~l~~~~~d----~~~~ 316 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLIQLLR-DDQD-SVREAAVESLVSLLDLLDDDDD----VVKS 316 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHhhhhh-cchh-hHHHHHHHHHHHHHHhcCCchh----hhhh
Confidence 36778888887776433322222222222 222223333222 2233 367777777776655 2311 1133
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHH
Q 007101 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (618)
+.+.++...++++. .++.........+...-+. .......++....+++.... +.+..
T Consensus 317 ~~~~l~~~~~d~~~------------~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~--------e~r~a 374 (759)
T KOG0211|consen 317 LTESLVQAVEDGSW------------RVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEW--------EVRYA 374 (759)
T ss_pred hhHHHHHHhcChhH------------HHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhh--------hhhHH
Confidence 46778888777766 7777777777766621111 11223346777777777655 55555
Q ss_pred HHHHHHHhhhcCc-hhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH
Q 007101 185 AADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (618)
Q Consensus 185 a~~~L~~L~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (618)
+..-...++.... .....+.....+|.+-.++.+.+..++...+.....+..-.+ +..-+ ....+.++..+++..+
T Consensus 375 ~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~~ 451 (759)
T KOG0211|consen 375 IAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDEDP 451 (759)
T ss_pred hhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhhH
Confidence 5555555554222 223334555667888888888888888877776666653222 22222 3467788889999999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC
Q 007101 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~ 343 (618)
+|+....+.+..+-...+...........++.+..+-.+..+.++.+..+.+..++.. ....+.+...-+.+..++.
T Consensus 452 ~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---~~~~~~~~~~~~l~~~~l~ 528 (759)
T KOG0211|consen 452 IVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---LGVEFFDEKLAELLRTWLP 528 (759)
T ss_pred HHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh---hhhHHhhHHHHHHHHhhhh
Confidence 9999999888777555555555666777888899888888899999999888888732 2245555666777778888
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhccccccccc
Q 007101 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 423 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~ 423 (618)
+....++..|+..+..++.... ..+.....++.++....+++...|...+.++..|+.--..
T Consensus 529 d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~---------------- 590 (759)
T KOG0211|consen 529 DHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ---------------- 590 (759)
T ss_pred hhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc----------------
Confidence 8889999999999999886433 4445556677788777777888888888888766522111
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCCh
Q 007101 424 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 503 (618)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 503 (618)
..+...+++.+..+..++.++||.+++..|..+...-.... .+....|.+..+.++++.
T Consensus 591 -------------------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~--~~~~v~pll~~L~~d~~~ 649 (759)
T KOG0211|consen 591 -------------------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV--RDEEVLPLLETLSSDQEL 649 (759)
T ss_pred -------------------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH--HHHHHHHHHHHhccCccc
Confidence 12355678889999999999999999999998864433221 245578888888889999
Q ss_pred hhhhhHHHHHHHhhhh
Q 007101 504 KQQLDGAVALFKLANK 519 (618)
Q Consensus 504 ~v~~~a~~~L~~L~~~ 519 (618)
++|.+|..+...+...
T Consensus 650 dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 650 DVRYRAILAFGSIELS 665 (759)
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999998887766654
No 62
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=2.7e-08 Score=104.27 Aligned_cols=270 Identities=16% Similarity=0.114 Sum_probs=211.1
Q ss_pred hhhhhhhccccCCCCCchhhhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHH
Q 007101 33 QMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVK 111 (618)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~ 111 (618)
++-...+.+|+.+.+.+.+...-+.-+|-+++.|.+. ..+++|+..|+.... ++.....-..-|+.|..++
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQLPiVLQVLLSQ--------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQLPIVLQVLLSQ--------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHhcchHHHHHHHH--------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 3444456666666666655555566677788888776 368899999999988 8999888889999999999
Q ss_pred hhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHH
Q 007101 112 HLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT 190 (618)
Q Consensus 112 lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~ 190 (618)
||+++.. +++.--..+-+++- .++.++..+++.++-.+++..|.....-+ .+-+..|+.+|.
T Consensus 520 LLQS~a~------------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~-----~EqrtmaAFVLA 582 (1387)
T KOG1517|consen 520 LLQSSAR------------ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIP-----PEQRTMAAFVLA 582 (1387)
T ss_pred HhccchH------------hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCC-----HHHHHHHHHHHH
Confidence 9999888 88887777777777 88999999999999899998888742211 277888999999
Q ss_pred HhhhcCchhhHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHH
Q 007101 191 NLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269 (618)
Q Consensus 191 ~L~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a 269 (618)
.++.+.+-.++.....+.+...++.++++ .+-++..++-+|..|-.+.+..+-.=++.++.+.|+.+|.++-++||.+|
T Consensus 583 viv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAA 662 (1387)
T KOG1517|consen 583 VIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAA 662 (1387)
T ss_pred HHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHH
Confidence 99998887788888888889889999885 68899999999999998778888777888999999999999999999999
Q ss_pred HHHHHHHhcCC----hhHHHHH-----------HhcCCHH----HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH
Q 007101 270 VGVIGNLVHSS----PNIKKEV-----------LAAGALQ----PVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (618)
Q Consensus 270 ~~~L~~l~~~~----~~~~~~~-----------~~~~~l~----~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (618)
+.+|+.+.... ++..... ..+..+. .++.++++..+-++.+.+.+|..+..+......
T Consensus 663 VFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 663 VFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred HHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 99999997752 2221111 1112222 566677778888888888888888765544433
No 63
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=98.93 E-value=1.7e-09 Score=104.17 Aligned_cols=84 Identities=32% Similarity=0.476 Sum_probs=73.2
Q ss_pred CCCcccchhHhhhcCCCcccEEEEECC-----eEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHH
Q 007101 532 SPTPQVYLGDQFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMR 606 (618)
Q Consensus 532 ~~~~~~~l~~~~~~~~~~~Dv~~~~~~-----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~ 606 (618)
.+++.... -.++++...+|+.|.+++ ..+|+||.+|+..|++|.+||.|++.+....+|.++++.|.+|..+|+
T Consensus 98 ~~t~~er~-~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~ 176 (521)
T KOG2075|consen 98 KETMRERQ-AALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLR 176 (521)
T ss_pred hhhHHHhh-HhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHH
Confidence 34444433 357788899999999974 579999999999999999999999999988999999999999999999
Q ss_pred HHhCCccccC
Q 007101 607 FDEFCAFNLS 616 (618)
Q Consensus 607 ~~Yt~~~~~~ 616 (618)
|+|++.+.+.
T Consensus 177 flYsdev~~~ 186 (521)
T KOG2075|consen 177 FLYSDEVKLA 186 (521)
T ss_pred HHhcchhhhh
Confidence 9999988763
No 64
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.92 E-value=4.1e-08 Score=96.21 Aligned_cols=227 Identities=19% Similarity=0.268 Sum_probs=157.2
Q ss_pred HHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHh------CCCHHHHHHhhcCCCCCccccCCCcchhH
Q 007101 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVE------GGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (618)
Q Consensus 59 v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~------~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~ 131 (618)
+..++.+|... ..+..+....+..+.++.. ++...+.+.. ......+++++..++. -
T Consensus 57 ~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~------------~ 120 (312)
T PF03224_consen 57 ASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS------------F 120 (312)
T ss_dssp -----HHHHHH-------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH------------H
T ss_pred HHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH------------H
Confidence 34455555544 2344577888999999988 5666666665 2357788888887766 8
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
++..|+..|..+. ..+..... ...+.++.+++.+++...... .+.+..++.+|.++.. .+..|..+.+.++++
T Consensus 121 i~~~a~~iLt~Ll~~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~----~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~ 194 (312)
T PF03224_consen 121 IQLKAAFILTSLLSQGPKRSEK-LVKEALPKLLQWLSSQLSSSD----SELQYIAVQCLQNLLR-SKEYRQVFWKSNGVS 194 (312)
T ss_dssp HHHHHHHHHHHHHTSTTT--HH-HHHHHHHHHHHHHH-TT-HHH----H---HHHHHHHHHHHT-SHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHhhcCCC----cchHHHHHHHHHHHhC-cchhHHHHHhcCcHH
Confidence 9999999999999 33332222 224567888888876332111 1677889999999997 888999999999999
Q ss_pred HHHHhh------c-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh
Q 007101 211 PLVELL------E-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN 282 (618)
Q Consensus 211 ~L~~ll------~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 282 (618)
.+..++ . ..+..++..++.+++.++. +++....+...+.++.|+++++ ...+.+.+-++.++.|+......
T Consensus 195 ~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 195 PLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 999999 2 2347899999999999998 7888888988889999999998 56789999999999999887654
Q ss_pred -HHHHHHhcCCHHHHHHhhcCC--ChhHH
Q 007101 283 -IKKEVLAAGALQPVIGLLSSC--CSESQ 308 (618)
Q Consensus 283 -~~~~~~~~~~l~~L~~ll~~~--~~~~~ 308 (618)
....++..|+++.+-.+.... ++++.
T Consensus 274 ~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ 302 (312)
T PF03224_consen 274 SNIELMVLCGLLKTLQNLSERKWSDEDLT 302 (312)
T ss_dssp THHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence 667777777777666666543 44443
No 65
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.92 E-value=7e-08 Score=94.60 Aligned_cols=226 Identities=22% Similarity=0.269 Sum_probs=158.5
Q ss_pred cHHHHHHHHhhc-cCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHh------cCChHHHHHhhcCCCHHHHHHHHHH
Q 007101 158 ALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDTKVQRAAAGA 230 (618)
Q Consensus 158 ~l~~L~~lL~~~-~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (618)
....++++|+.. ... ++..+.+..+..+..+++.....+.. .....++++++..+|..++..++..
T Consensus 56 ~~~~~l~lL~~~~~~~-------d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~i 128 (312)
T PF03224_consen 56 YASLFLNLLNKLSSND-------DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFI 128 (312)
T ss_dssp ------HHHHHH---H-------HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcH-------HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence 466777888777 332 89999999999999988866665554 1256788889999999999999999
Q ss_pred HHHhhcCCcccHHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh-----c
Q 007101 231 LRTLAFKNDENKNQIVECNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----S 301 (618)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-----~ 301 (618)
|..+....+....... .+.++.+++++.+ ++.+++..++.+|.++... +..+..+.+.++++.+..++ .
T Consensus 129 Lt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 129 LTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH-----
T ss_pred HHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhccc
Confidence 9999875444433322 3456677776663 4556789999999999754 78888899999999999999 2
Q ss_pred CC--ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCC--cchhhHhcCCH
Q 007101 302 SC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH--NQAGIAHNGGL 376 (618)
Q Consensus 302 ~~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~l 376 (618)
+. ....+..++.+++-++ .++.....+...++++.|+++++. ..+++.+-+..++.||..... ....++..+++
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l 285 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL 285 (312)
T ss_dssp ----HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH
T ss_pred CCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH
Confidence 22 4566789999999996 557777888888899999999986 688999999999999998665 55666666666
Q ss_pred HHHHHhhcC--CChhHHHH
Q 007101 377 VPLLKLLDS--KNGSLQHN 393 (618)
Q Consensus 377 ~~L~~ll~~--~~~~v~~~ 393 (618)
+.+-.+... .|+++...
T Consensus 286 ~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 286 KTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHH
Confidence 555555543 36666543
No 66
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.92 E-value=1.6e-06 Score=83.06 Aligned_cols=346 Identities=14% Similarity=0.150 Sum_probs=225.4
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHh------cCChHHHHHhhcCCCHHHHHHHHHHH
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDTKVQRAAAGAL 231 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (618)
.+..++.+++....+ +...+++..+..+...+...-..+.. ...-...+.++...+.-+.....+++
T Consensus 66 ~v~~fi~LlS~~~kd-------d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Il 138 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKD-------DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRIL 138 (442)
T ss_pred HHHHHHHHhchhhhH-------HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHH
Confidence 467788888877664 77788888887777655432222211 12246778888889988888888999
Q ss_pred HHhhcCCcccHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC--CChhHH
Q 007101 232 RTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQ 308 (618)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~ 308 (618)
+.++.........-...=....|-..+++ .+++....|++||..+... ++.+-.++.++++..++..+.+ .+..++
T Consensus 139 s~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 139 SKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHH
Confidence 88875322221110000012334445554 6778889999999999776 5666777788888888888843 356788
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCcc-------hhhHhcCCHHHHH
Q 007101 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQ-------AGIAHNGGLVPLL 380 (618)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~-------~~l~~~~~l~~L~ 380 (618)
...+.+++-++. ++.....+...+.++.|.+++++ ..+.|..-++.++.|++...+.+ ..++..+..+.+-
T Consensus 218 YqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 218 YQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 899999999974 45555666778999999999987 56788889999999998765321 2345555554444
Q ss_pred HhhcC--CChhHHHHHHHHHHHh-------hcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHH
Q 007101 381 KLLDS--KNGSLQHNAAFALYGL-------ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 451 (618)
Q Consensus 381 ~ll~~--~~~~v~~~a~~~L~~l-------~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 451 (618)
.+-.. .|.++....-..-..| +..++...++. .|-++ ... .+....-......++.+ -...+++
T Consensus 297 ~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~-sG~L~----WSP-~Hk~e~FW~eNa~rlne-nnyellk 369 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELR-SGRLE----WSP-VHKSEKFWRENADRLNE-NNYELLK 369 (442)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-hCCcC----CCc-cccccchHHHhHHHHhh-ccHHHHH
Confidence 44332 3555544332222222 22233333322 12111 000 11111112222222221 1446889
Q ss_pred HHHHHHhhCC-HhHHHHHHHHHHhhcC-CCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 452 HLLYLMRVAE-KGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 452 ~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
.|+.+|..++ |.+-.-||.=++.+.. .+..+..+.+-||-+.+.++++++|++||..|..|+..|..+
T Consensus 370 iL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 370 ILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 9999999874 8888888888888874 566888888899999999999999999999999999988765
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.2e-06 Score=85.61 Aligned_cols=403 Identities=16% Similarity=0.204 Sum_probs=248.1
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHH
Q 007101 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (618)
Q Consensus 62 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (618)
+...++..+. +.+..++-.|+.+|++++.-+-.+. ..|-..++|++.++ -+|..|+-+..
T Consensus 108 ltNslknDL~--s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~------------~irKKA~Lca~ 167 (866)
T KOG1062|consen 108 LTNSLKNDLN--SSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDP------------YIRKKAALCAV 167 (866)
T ss_pred HHHHHHhhcc--CCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCH------------HHHHHHHHHHH
Confidence 3444444442 2355577788888888876433322 35777888988776 89999999999
Q ss_pred Hhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC--
Q 007101 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-- 218 (618)
Q Consensus 142 ~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-- 218 (618)
.+. ..|+.-.. +++...++|.+.+. -+....+..+..+|..+++.-..+.+ .++-++..|+.
T Consensus 168 r~irK~P~l~e~-----f~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 168 RFIRKVPDLVEH-----FVIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT 232 (866)
T ss_pred HHHHcCchHHHH-----hhHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh
Confidence 888 66765443 46777788887765 66677888889999887765555543 55666666541
Q ss_pred -------------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC------CHHHHHHHHHHHHHHhcC
Q 007101 219 -------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 219 -------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~v~~~a~~~L~~l~~~ 279 (618)
++|-++...++.|.-+-.++++..+.+.+ .|.+..+.. ...+.++++.++..+-..
T Consensus 233 ~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~ 307 (866)
T KOG1062|consen 233 NSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSN 307 (866)
T ss_pred cCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCC
Confidence 36889999999999998865555555543 244444421 246788888888887332
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 007101 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (618)
Q Consensus 280 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~ 359 (618)
+..+.. ++..|-++|.+.+..++.-++..|......++...+.- =..++++|+++|..++..|...+..
T Consensus 308 -~~Lrvl-----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~ 376 (866)
T KOG1062|consen 308 -SGLRVL-----AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYA 376 (866)
T ss_pred -chHHHH-----HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 332222 45677788888888888888888888776655543322 2567889999999999999998888
Q ss_pred hhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC-CcchhHHHhhcccccccc-cchhhhhHHHHHHHH
Q 007101 360 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKT 437 (618)
Q Consensus 360 l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~L~~-~~~~~~~~~~~~~~~ 437 (618)
|......+ . .+..|+..|.+.+.+.+...+.-+..++.. .+.....++. ....+.. +.+........+...
T Consensus 377 lvn~~Nv~-~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idt-ml~Vl~~aG~~V~~dv~~nll~L 449 (866)
T KOG1062|consen 377 LVNESNVR-V-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDT-MLKVLKTAGDFVNDDVVNNLLRL 449 (866)
T ss_pred HhccccHH-H-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHH-HHHHHHhcccccchhhHHHHHHH
Confidence 87532221 1 245577778777888888888888877732 2222222211 0000000 111111111111111
Q ss_pred HHHHHHHHhhhhHHHHHH------HHhhCCHhHHHHHHHHHHhhc----C--CCccccceecCCchHHHHHHhcC--CCh
Q 007101 438 LKRLEEKIHGRVLNHLLY------LMRVAEKGVQRRVALALAHLC----S--PDDQRTIFIDGGGLELLLGLLGS--TNP 503 (618)
Q Consensus 438 ~~~~~~~~~~~~l~~L~~------ll~~~~~~v~~~a~~~L~~l~----~--~~~~~~~~~~~~~l~~L~~ll~~--~~~ 503 (618)
+.+-....+.....++.. ++.-+.+.+..-+.|+|+... . +.+....+-+..++..|..++.+ .+.
T Consensus 450 Ia~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~ 529 (866)
T KOG1062|consen 450 IANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDS 529 (866)
T ss_pred HhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchH
Confidence 111100001111111111 122345566778899998754 1 12233344567788888888864 568
Q ss_pred hhhhhHHHHHHHhhhhhcc
Q 007101 504 KQQLDGAVALFKLANKATT 522 (618)
Q Consensus 504 ~v~~~a~~~L~~L~~~~~~ 522 (618)
.++..|..||..|+.....
T Consensus 530 ~tk~yal~Al~KLSsr~~s 548 (866)
T KOG1062|consen 530 TTKGYALTALLKLSSRFHS 548 (866)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 8899999999999887544
No 68
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.91 E-value=1.2e-06 Score=83.95 Aligned_cols=317 Identities=14% Similarity=0.204 Sum_probs=213.0
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHH-h------CCCHHHHHHhhcCCCCCccccCCCcch
Q 007101 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIV-E------GGAVPALVKHLQAPPTSEADRNLKPFE 129 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~------~g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (618)
..+-.++.++.... .+ +.....+..+.++.+....+..+. . .-.-+..+++|...+.
T Consensus 65 ~~v~~fi~LlS~~~----kd-d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~----------- 128 (442)
T KOG2759|consen 65 QYVKTFINLLSHID----KD-DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDT----------- 128 (442)
T ss_pred HHHHHHHHHhchhh----hH-HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCCh-----------
Confidence 34455555555442 22 244556777777766333333222 2 2235678888888777
Q ss_pred hHHHHHHHHHHHHhc-CChhhHHHHHhCCc----HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH
Q 007101 130 HEVEKGSAFALGLLA-VKPEHQQLIVDNGA----LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~----l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (618)
-+.....++++.++ ..+.. +..+. ...+-.++++..++ +....+++||..+.. .++.|..+.
T Consensus 129 -~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~-------~~~~~~~rcLQ~ll~-~~eyR~~~v 195 (442)
T KOG2759|consen 129 -FIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNN-------DYIQFAARCLQTLLR-VDEYRYAFV 195 (442)
T ss_pred -HHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCC-------chHHHHHHHHHHHhc-Ccchhheee
Confidence 78888999999998 33321 11112 23344444553332 777889999999998 667788888
Q ss_pred hcCChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh
Q 007101 205 MEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 281 (618)
Q Consensus 205 ~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 281 (618)
...++..++..+.+ .+-.++...+.+++.|+. ++...+.+...+.++.|..+++ +..+.|.+-++.++.|+....+
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 88889999888843 467899999999999998 6777777777899999999998 4567899999999999988764
Q ss_pred ------hHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHHH-------HHHHhcC--------------Ch---------
Q 007101 282 ------NIKKEVLAAGALQPVIGLLSSC--CSESQREAALL-------LGQFAAT--------------DS--------- 323 (618)
Q Consensus 282 ------~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~-------L~~l~~~--------------~~--------- 323 (618)
+....++..++.+.+-.+-... +.++....-.. ...+++. +|
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 3334555566666555554433 33332221111 1111111 11
Q ss_pred hhHHHHHh--cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC-CcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007101 324 DCKVHIVQ--RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 399 (618)
Q Consensus 324 ~~~~~l~~--~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 399 (618)
++...+-+ ..++..|+.+|+. .||.+..-||.=++...++. ..+..+.+.|+=+.+.++++++|++|+.+|+.++.
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 12222322 2478889999987 46888888999999999854 45566777899999999999999999999999988
Q ss_pred Hhhc
Q 007101 400 GLAD 403 (618)
Q Consensus 400 ~l~~ 403 (618)
.|..
T Consensus 435 ~lm~ 438 (442)
T KOG2759|consen 435 KLMV 438 (442)
T ss_pred HHHh
Confidence 7753
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=7.4e-08 Score=94.79 Aligned_cols=354 Identities=15% Similarity=0.129 Sum_probs=227.9
Q ss_pred hCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHH
Q 007101 102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (618)
Q Consensus 102 ~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (618)
-.+++|+.+..+.+.+. .+|-.|+..|.|++.-...........+...+.++..+.+. .
T Consensus 82 ~~~iv~Pv~~cf~D~d~------------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~---------~ 140 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDS------------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ---------N 140 (675)
T ss_pred HHHhhHHHHHhccCccc------------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc---------c
Confidence 36778999999999888 89999999999998222211122233445566666665543 2
Q ss_pred HHHHHHHHHHhhhcCchhhH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHH-HhcCCHHHHHHhhc
Q 007101 182 IRRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILMLR 259 (618)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~ll~ 259 (618)
.+.+...+-.+..+-...+. .+.-.+++|.|-+.+...++..|.....-|..+-. .| ..+.+ .-..+++.|..+|.
T Consensus 141 V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~Ls 218 (675)
T KOG0212|consen 141 VRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLS 218 (675)
T ss_pred cccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhc
Confidence 23344445444432221111 33335567777777777889999999988888864 23 23332 22457788899999
Q ss_pred CCCHHHHHHHHHHHHHHhcC---ChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 007101 260 SEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~ 336 (618)
+++++|+..+-.+++++... +|.. +-....++.++.-+.++++.++..|+..+..+..-.+. .....-.|++.
T Consensus 219 D~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~ 294 (675)
T KOG0212|consen 219 DSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILT 294 (675)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhh
Confidence 99999998887777776332 2211 11234678889999999999998888877777644333 22334467788
Q ss_pred HHHHhhCCCCHH-HHHHHHH---HHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHH
Q 007101 337 PLIEMLQSPDVQ-LREMSAF---ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 412 (618)
Q Consensus 337 ~L~~lL~~~~~~-v~~~a~~---~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 412 (618)
.++.++.+.++. +++.+.. .+..++........+--...+..+.+.+.+...+.+..++.-+..|-...++.-..
T Consensus 295 ~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~- 373 (675)
T KOG0212|consen 295 AILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV- 373 (675)
T ss_pred hcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh-
Confidence 888888876653 4443332 23334433333323322345777888888888888888888888776554441111
Q ss_pred hhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchH
Q 007101 413 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 492 (618)
Q Consensus 413 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 492 (618)
....+...|+.-|.+++.++...++..+.++|.+++.... ...+.
T Consensus 374 --------------------------------h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~ 418 (675)
T KOG0212|consen 374 --------------------------------HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLL 418 (675)
T ss_pred --------------------------------hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHH
Confidence 2345777889999999999999999999999988875521 23455
Q ss_pred HHHHHhcCCChhhhhhHHHHHHHhhh
Q 007101 493 LLLGLLGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 493 ~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (618)
.|++++.....-++..+.-.+..|+.
T Consensus 419 sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 419 SLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 55566555555555566555555554
No 70
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.90 E-value=1.2e-06 Score=86.44 Aligned_cols=351 Identities=14% Similarity=0.082 Sum_probs=220.6
Q ss_pred HHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHH
Q 007101 109 LVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188 (618)
Q Consensus 109 Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~ 188 (618)
.++.|.++.+ .....|+.+++.++.- -+..+..|-|+..+.+......+. ..+..++.+
T Consensus 99 al~aL~s~ep------------r~~~~Aaql~aaIA~~------Elp~~~wp~lm~~mv~nvg~eqp~---~~k~~sl~~ 157 (858)
T COG5215 99 ALRALKSPEP------------RFCTMAAQLLAAIARM------ELPNSLWPGLMEEMVRNVGDEQPV---SGKCESLGI 157 (858)
T ss_pred HHHHhcCCcc------------HHHHHHHHHHHHHHHh------hCccccchHHHHHHHHhccccCch---HhHHHHHHH
Confidence 3456666665 8888899999888822 123455666666665544332222 888999999
Q ss_pred HHHhhhcCchhhHHHHhcCC-hHHHHH-hhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhc----CCHHHHHHhhcCC
Q 007101 189 ITNLAHENSSIKTRVRMEGG-IPPLVE-LLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVEC----NALPTLILMLRSE 261 (618)
Q Consensus 189 L~~L~~~~~~~~~~~~~~~~-i~~L~~-ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~~~~L~~ll~~~ 261 (618)
+++.|....+ ...+...+. +-.++. -++. ++..+|..++++|.+-+. ..+..+... =+++..++.-+.+
T Consensus 158 ~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~ 233 (858)
T COG5215 158 CGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGN 233 (858)
T ss_pred HHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCC
Confidence 9999985444 333333333 233333 3333 567899999999998332 111122111 1234456677788
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHH------------
Q 007101 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI------------ 329 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l------------ 329 (618)
+.+++..+..||..+..-.-...+...+..+.......+.+.+.++...+...-+.++...-+.....
T Consensus 234 d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~ 313 (858)
T COG5215 234 DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHG 313 (858)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcc
Confidence 99999999999999866544444555555566677788889999998888877767763321111111
Q ss_pred ----HhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHH
Q 007101 330 ----VQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (618)
Q Consensus 330 ----~~~~~~~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (618)
.-.+++|.|+++|.. ++..+...|..+|.-.+....+ .+.+. .+..+-+-+.++++.-++.+..++
T Consensus 314 fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 314 FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCchhhhHHHHHHHh
Confidence 113478999999864 2345666777777766653222 12222 334455567888999999999999
Q ss_pred HHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC
Q 007101 399 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (618)
Q Consensus 399 ~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 478 (618)
+.+..++... |+ ..+-.+.+|.+...+.++.--++..++|+++.++..
T Consensus 391 GSvm~gp~~~------------------------~l--------T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 391 GSVMHGPCED------------------------CL--------TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhhhcCccHH------------------------HH--------HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 9998665321 00 112235678888888988888999999999999754
Q ss_pred CccccceecCCchHHHHHHh-c--CCChhhhhhHHHHHHHhhhhhc
Q 007101 479 DDQRTIFIDGGGLELLLGLL-G--STNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll-~--~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
-.. .+-..+.++..++-. . .++|.+...++|...|+..+..
T Consensus 439 va~--~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 439 VAM--IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred HHH--hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 321 111222233222211 1 3578888899999999998743
No 71
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=5.4e-07 Score=82.45 Aligned_cols=292 Identities=16% Similarity=0.133 Sum_probs=192.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHH-HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
.-++.++.+.+|.|+..|...+..++.. ..+... .+...++.+.+++.+.++ ...|+.+|.|++.. +..++.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 4578889999999999999999998863 222222 224567888899987776 77889999999776 55566666
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh------cCChHHHHHhhCCC-CH-HHHHHHHHHHHHh
Q 007101 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSP-DV-QLREMSAFALGRL 360 (618)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~------~~~~~~L~~lL~~~-~~-~v~~~a~~~L~~l 360 (618)
+. ++..++..+.++.+......+..|+|++..+......+.. .|.+.........+ +. .--.+.+..+.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 8888888888888889999999999998766555444332 33444444444432 21 2234567788999
Q ss_pred hcCCCcchhhHhcCCHHH--HHHhhcCCChhHH-HHHHHHHHHhhcCCcchhHHHhhc--ccccccccchhhhhHHHHHH
Q 007101 361 AQDMHNQAGIAHNGGLVP--LLKLLDSKNGSLQ-HNAAFALYGLADNEDNVADFIRVG--GVQKLQDGEFIVQATKDCVA 435 (618)
Q Consensus 361 ~~~~~~~~~l~~~~~l~~--L~~ll~~~~~~v~-~~a~~~L~~l~~~~~~~~~l~~~~--~~~~L~~~~~~~~~~~~~~~ 435 (618)
++....|..+.....++. ++.+-. .+..+| ...+++|.|.|....+...+...+ .++.++-..- ..
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPla---gp----- 230 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLA---GP----- 230 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcC---Cc-----
Confidence 998888887777664332 333333 455554 478899999998888777776532 1111110000 00
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHh-----hCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcC-CChhhhhhH
Q 007101 436 KTLKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDG 509 (618)
Q Consensus 436 ~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a 509 (618)
+.+.+. +-.-+|.=++++. .+++.++..-+.+|..||.....|..+...|+.+.+-.+-+. .+++++..+
T Consensus 231 ---ee~sEE-dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ac 306 (353)
T KOG2973|consen 231 ---EELSEE-DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREAC 306 (353)
T ss_pred ---cccCHH-HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHH
Confidence 000000 0011122224443 468999999999999999999999999888888877777654 677777666
Q ss_pred HHHHHHhhhhh
Q 007101 510 AVALFKLANKA 520 (618)
Q Consensus 510 ~~~L~~L~~~~ 520 (618)
-.....+.+..
T Consensus 307 e~vvq~Lv~~e 317 (353)
T KOG2973|consen 307 EQVVQMLVRLE 317 (353)
T ss_pred HHHHHHHHhcc
Confidence 66666666543
No 72
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.8e-06 Score=77.50 Aligned_cols=371 Identities=15% Similarity=0.169 Sum_probs=236.4
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CCh--hh--HHHHHhCCcHHHHHHHHhhccCCCCcccchH
Q 007101 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP--EH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~--~~--~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~ 180 (618)
.|.|-.-|.+++. .|+..++..++.+. +.. .. -..++..+.++.++..+-..+. +
T Consensus 84 mpdLQrGLiadda------------sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------e 143 (524)
T KOG4413|consen 84 MPDLQRGLIADDA------------SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------E 143 (524)
T ss_pred hHHHHhcccCCcc------------hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------H
Confidence 4455555666666 78888888888887 322 22 2334578999999999998877 8
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCChHH--HHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007101 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPP--LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~--L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
+...|...+..++. .+..-..+.....+.. +..+....+.-+|..++..+..+.+-+++.......+|.+..|..-|
T Consensus 144 VAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 144 VAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 99999999999987 4544455555555433 33344445566777788888888877888888888899999998888
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChh--HHHHHHHHHHHHhcC----C--hh--hHH
Q 007101 259 RS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE--SQREAALLLGQFAAT----D--SD--CKV 327 (618)
Q Consensus 259 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~--~~~~a~~~L~~l~~~----~--~~--~~~ 327 (618)
+. .+.-|+..++.....|+.. +..++.+.+.|++..+.+++...+.+ -.-.++...+.+... + ++ +..
T Consensus 223 kGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicea 301 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA 301 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH
Confidence 75 6778888899998888765 33456777889999999998754332 333455554444321 1 11 111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCC--HHH-HHHhhcCCChhHHHHHHHHHHHhhcC
Q 007101 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG--LVP-LLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 328 ~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~--l~~-L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
.+ -.+.....++...|++.++.|..+++.|..+.+....+...+. ... +.+..+.....-++.++.+|.+++..
T Consensus 302 li---iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 302 LI---IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HH---HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 11 1345556677789999999999999999988777666665544 333 33444443334467888888888744
Q ss_pred Ccchh-HHHhhcccccccccchhhhhHHHH-HHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc-c
Q 007101 405 EDNVA-DFIRVGGVQKLQDGEFIVQATKDC-VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-Q 481 (618)
Q Consensus 405 ~~~~~-~l~~~~~~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 481 (618)
-.-.. .+.+-+..+. ..| +.+...+ -..-.-+.-....+..+.++++..+.+++..++..+. .
T Consensus 379 lrlkpeqitDgkaeer-----------lrclifdaaaq---stkldPleLFlgilqQpfpEihcAalktfTAiaaqPWal 444 (524)
T KOG4413|consen 379 LRLKPEQITDGKAEER-----------LRCLIFDAAAQ---STKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWAL 444 (524)
T ss_pred ccCChhhccccHHHHH-----------HHHHHHHHHhh---ccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHH
Confidence 22111 1111111111 111 1111111 0111234446677888899999999999999998887 4
Q ss_pred ccceecCCchHHHHHHhcC---CChhhhhhHHHHHHH
Q 007101 482 RTIFIDGGGLELLLGLLGS---TNPKQQLDGAVALFK 515 (618)
Q Consensus 482 ~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~ 515 (618)
+.++.+.+.+......... -..+.|..+++++.+
T Consensus 445 keifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 445 KEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 4555566666555443321 122345556666554
No 73
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.84 E-value=5.4e-06 Score=82.10 Aligned_cols=428 Identities=16% Similarity=0.107 Sum_probs=247.6
Q ss_pred HHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCH----HHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007101 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAV----PALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 62 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v----~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
++.+....++ .+.+..++..|+.+|.+-+. ..+..|-..+-. ...++.-+.++. +++..|.
T Consensus 178 l~aiv~ga~k-~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~------------e~q~aaf 242 (858)
T COG5215 178 LFAIVMGALK-NETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDE------------ELQHAAF 242 (858)
T ss_pred HHHHHHhhcc-cCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcH------------HHHHHHH
Confidence 3344444432 34456688888888887332 111112222222 233344444444 9999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH------------
Q 007101 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR------------ 204 (618)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~------------ 204 (618)
.+|.++. -.-.+-....+.-........+++.++ ++..+++.....+|.+.-+..-...
T Consensus 243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 9999888 333333344444444455556666666 8888899888888864332211111
Q ss_pred ----hcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 007101 205 ----MEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273 (618)
Q Consensus 205 ----~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L 273 (618)
..+.+|.|+.+|.. +++.+...|..+|.-.+. -..+.+++. ++..+-+-+++++-.-++.++.++
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMRP-VLGFVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHh
Confidence 12467888888864 245666667666666553 122233332 233333455677888899999999
Q ss_pred HHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-hhCC--CCHHHH
Q 007101 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQS--PDVQLR 350 (618)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~-lL~~--~~~~v~ 350 (618)
+.+..+.......-+-...+|.+...+.++..-++..++|+++.++.. ....+-..+-++..++ .+.. +++.+.
T Consensus 391 GSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p~~~ 467 (858)
T COG5215 391 GSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCPFRS 467 (858)
T ss_pred hhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccchHH
Confidence 999877544444444456888899999888888899999999999733 2222323333333333 3322 577888
Q ss_pred HHHHHHHHHhhcCCCcc----hhhHhcCCHHHHHHhh------cCCChhHHHHHHHHHHHhhcC-CcchhHHHhhccccc
Q 007101 351 EMSAFALGRLAQDMHNQ----AGIAHNGGLVPLLKLL------DSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQK 419 (618)
Q Consensus 351 ~~a~~~L~~l~~~~~~~----~~l~~~~~l~~L~~ll------~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~ 419 (618)
.+++|..-|+..+-... ..+. ....+.++.-| ...+...|..+..+|..|... ++....+.. |....
T Consensus 468 ~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~ 545 (858)
T COG5215 468 INCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDY 545 (858)
T ss_pred hhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHH
Confidence 89999999998643221 1111 12222233222 123455666666666666432 222222211 11111
Q ss_pred ccc---cchhhh----------hHHHHHHHHHHHHHHH----------HhhhhHHHHHHHHhhCCH-hHHHHHHHHHHhh
Q 007101 420 LQD---GEFIVQ----------ATKDCVAKTLKRLEEK----------IHGRVLNHLLYLMRVAEK-GVQRRVALALAHL 475 (618)
Q Consensus 420 L~~---~~~~~~----------~~~~~~~~~~~~~~~~----------~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l 475 (618)
..+ ...+++ ...+...+.+.-++.+ ....++.-++.+|.+.++ .+-..+..+++++
T Consensus 546 ~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal 625 (858)
T COG5215 546 TSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISAL 625 (858)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHH
Confidence 000 000000 1122222222222222 244577888888888754 4556677899999
Q ss_pred cCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 476 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
+.+-+.+...+-...+|.|.+-++..+..+-..|...+..|++...
T Consensus 626 ~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~ 671 (858)
T COG5215 626 STSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLG 671 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence 8877767666677889999998888888888888888888887643
No 74
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.84 E-value=2.4e-09 Score=90.32 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=63.4
Q ss_pred cchhHhhhcCCCcccEEEEECC---eEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCcc
Q 007101 537 VYLGDQFVNNATLSDVTFLVEG---RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCAF 613 (618)
Q Consensus 537 ~~l~~~~~~~~~~~Dv~~~~~~---~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~ 613 (618)
..+...++....|+|++|.++| +.++|||.||++||++++ |.++-.|. ..+..+.+.++++|...++||||+++
T Consensus 54 LaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~dDad~Ea~~t~iRWIYTDEi 130 (280)
T KOG4591|consen 54 LAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDLDDADFEAFHTAIRWIYTDEI 130 (280)
T ss_pred HHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhcccccCHHHHHHhheeeecccc
Confidence 3444678889999999999984 779999999999999997 54432232 34667789999999999999999999
Q ss_pred ccCC
Q 007101 614 NLSS 617 (618)
Q Consensus 614 ~~~~ 617 (618)
++.+
T Consensus 131 dfk~ 134 (280)
T KOG4591|consen 131 DFKE 134 (280)
T ss_pred cccc
Confidence 8754
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.82 E-value=1.6e-06 Score=88.16 Aligned_cols=259 Identities=15% Similarity=0.080 Sum_probs=162.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH--HHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHH
Q 007101 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (618)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l 329 (618)
..++..|++..+.+|..|+..++.++.--..+. +.+...| ..|.+.|....+++.-..+.++..+...-.-.+..-
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 334456677788888888888887753211111 1122222 246677777788887766666666642211000000
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc---hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc
Q 007101 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 406 (618)
Q Consensus 330 ~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (618)
=-.+++|.|..+|++.+..+++++...++.+|...... ..+.. +--.|+.+|.+.+.++|.+|..+++.++..-.
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 11468999999999999999999999999999754331 11111 12237888888899999999999999985422
Q ss_pred chhHHHhhcccccccccch-hhhhHHHHHHHHHHHHHHH-HhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc--cc
Q 007101 407 NVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QR 482 (618)
Q Consensus 407 ~~~~l~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 482 (618)
-. +++..|++... +....+.|-+-.+.-..+. -.-.++|.|.+=-+.++..||..++.+++.+-..-. .+
T Consensus 958 Pq------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 958 PQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred HH------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 21 22233333222 1112233322222111111 134677888877788899999999999998853322 22
Q ss_pred cceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhcc
Q 007101 483 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (618)
Q Consensus 483 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (618)
.. -....|.|...+.+.+.--|..|+.++.+|+-+..+
T Consensus 1032 dY--iyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1032 DY--IYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred hH--HHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC
Confidence 22 123578888888899999999999999999987543
No 76
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=7.7e-06 Score=84.41 Aligned_cols=392 Identities=15% Similarity=0.141 Sum_probs=229.8
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHH-HHHhhcCCCCCccccCCCcchhHHHHHH
Q 007101 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPA-LVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~-Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
....+++-++..-+..++...++.+++.+=+.+-.. ..-.......+... .+.+|..+.+ -=+..|
T Consensus 9 rL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~-~~d~~~r~rniaKLlYi~MLGypah------------FGqiec 75 (866)
T KOG1062|consen 9 RLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREP-TNDPRKRHRNIAKLLYIHMLGYPAH------------FGQIEC 75 (866)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHhCCCcc------------chhhHH
Confidence 445566666666555666666777776665555551 11111222222232 2455555544 223334
Q ss_pred HHHHHHhcCChhhH----HHH--H--hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007101 137 AFALGLLAVKPEHQ----QLI--V--DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 137 ~~~L~~l~~~~~~~----~~~--~--~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
++.++.= +-.+-| ..+ . ...++-.+.+.++..-..... -++..|+.+|++++. ++.. ...
T Consensus 76 lKLias~-~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq----~vVglAL~alg~i~s--~Ema-----rdl 143 (866)
T KOG1062|consen 76 LKLIASD-NFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQ----YVVGLALCALGNICS--PEMA-----RDL 143 (866)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCe----eehHHHHHHhhccCC--HHHh-----HHh
Confidence 3333210 001101 111 1 123455556666654333222 567788999999985 3222 235
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
.|-+.+++++.++.+|.+|+.|...+....|+..+. +++...++|.+.+..|....+..+..+|..+++......
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr 218 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFR 218 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHH
Confidence 688899999999999999999999999876666544 345677888888899999999999999888776544443
Q ss_pred hcCCHHHHHHhhc----CCC-hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007101 289 AAGALQPVIGLLS----SCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 289 ~~~~l~~L~~ll~----~~~-~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
. .++.|+..|+ +.. ++-- ...+ .+|..+.. +-.++.+|...+++........|..++++
T Consensus 219 ~--l~~~lV~iLk~l~~~~yspeyd------v~gi--~dPFLQi~------iLrlLriLGq~d~daSd~M~DiLaqvatn 282 (866)
T KOG1062|consen 219 D--LVPSLVKILKQLTNSGYSPEYD------VHGI--SDPFLQIR------ILRLLRILGQNDADASDLMNDILAQVATN 282 (866)
T ss_pred H--HHHHHHHHHHHHhcCCCCCccC------ccCC--CchHHHHH------HHHHHHHhcCCCccHHHHHHHHHHHHHhc
Confidence 3 3444444433 110 0000 0000 11211111 23456667777888888888888888875
Q ss_pred CCcchhhHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHH
Q 007101 364 MHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 442 (618)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 442 (618)
.+.-.-....-..+.+..++. ..+..++..|+.+|+.+..+.++-...+....+-+++.... .
T Consensus 283 tdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~--~-------------- 346 (866)
T KOG1062|consen 283 TDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDP--T-------------- 346 (866)
T ss_pred ccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCc--H--------------
Confidence 433221111111222222221 24678888999999988766555333332222221111000 0
Q ss_pred HHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 443 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 443 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
.-...-..++++|+++|..+++.|+..+..+....+-+. .+..|+..|.+.+++.|...+.-+..++..
T Consensus 347 --avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 347 --AVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred --HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 011223458899999999999999999999987766555 377888888888999999988888888876
No 77
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.4e-07 Score=90.25 Aligned_cols=319 Identities=15% Similarity=0.120 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007101 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (618)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (618)
.+.++.++..+.+.+. .++.+|+..+.|++........ ..-..+...+.++..+++..++ .++..+-.+.
T Consensus 83 ~~iv~Pv~~cf~D~d~--------~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLi 152 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS--------QVRYYACESLYNIAKVAKGEVL-VYFNEIFDVLCKLSADSDQNVR-GGAELLDRLI 152 (675)
T ss_pred HHhhHHHHHhccCccc--------eeeeHhHHHHHHHHHHhccCcc-cchHHHHHHHHHHhcCCccccc-cHHHHHHHHH
Confidence 4568888999988877 8999999999999973322111 1112234556666666666665 3445555554
Q ss_pred cCCcccHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007101 236 FKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (618)
Q Consensus 236 ~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (618)
.+-..... .+--.+++|.|-..+...++..|...+.-|..+-.. |...-.-.-..+++-|..+|.+++.+++.-+-.+
T Consensus 153 kdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~ 231 (675)
T KOG0212|consen 153 KDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL 231 (675)
T ss_pred HHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 31111111 222234455555555567899999999888888333 3321111124578889999999999998776666
Q ss_pred HHHHhc---CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChh-H
Q 007101 315 LGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS-L 390 (618)
Q Consensus 315 L~~l~~---~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~-v 390 (618)
++++-. .+|.. +--...++.++..+.++++.++..|...+..+..-....-...-.+.+..++.++.+.+.. +
T Consensus 232 l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 232 LSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 665531 22221 1124578889999999999999999999999887655554555567777788888776653 4
Q ss_pred HHHHHH---HHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHH
Q 007101 391 QHNAAF---ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRR 467 (618)
Q Consensus 391 ~~~a~~---~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 467 (618)
+..+.. .|..+...+...+. ++ -+.++..+...+.+...+.+..
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~~~-id--------------------------------~~~ii~vl~~~l~~~~~~tri~ 355 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLKEE-ID--------------------------------YGSIIEVLTKYLSDDREETRIA 355 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhccc-cc--------------------------------hHHHHHHHHHHhhcchHHHHHH
Confidence 333322 23334333332222 11 1246777888899999999999
Q ss_pred HHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 468 VALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 468 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
++.-+..+-....++.........+.|+.-+.+++.+|...+...+.+++.+..
T Consensus 356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 999999988777777777788899999999999999999999999999998754
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.8e-06 Score=76.83 Aligned_cols=309 Identities=15% Similarity=0.148 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc--H--HHHHhcCCHHHHH
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN--K--NQIVECNALPTLI 255 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~--~~~~~~~~~~~L~ 255 (618)
+....++.+|-.|........ ......+.|-.-|..++..+...+|..+..+..+.+.+ . ..+++.++++.++
T Consensus 58 ekttlcVscLERLfkakegah---lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklil 134 (524)
T KOG4413|consen 58 EKTTLCVSCLERLFKAKEGAH---LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL 134 (524)
T ss_pred chhhhHHHHHHHHHhhccchh---hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH
Confidence 344457777777765333221 11345566666777888899999999888888755532 2 2345789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHH--HHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 007101 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP--VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 333 (618)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~--L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~ 333 (618)
.....++.+|...|...+..++.. +.....+.....+.. +.++...++.-.|......+-.+.+.++.........|
T Consensus 135 dcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSG 213 (524)
T KOG4413|consen 135 DCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSG 213 (524)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence 999999999999999999999776 444455555555443 44555556666788888888888888888888888899
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHhhcCCcchhH
Q 007101 334 AVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVAD 410 (618)
Q Consensus 334 ~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 410 (618)
++..|..-|+. .|.-|+.++......|+...+.+..+.+.+.+..+.+++.-. ++--...++.....+..+. +...
T Consensus 214 LldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgke-aimd 292 (524)
T KOG4413|consen 214 LLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE-AIMD 292 (524)
T ss_pred HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch-HHhh
Confidence 99999988887 788888999999999999888888899999999988888543 3333333444444443221 1111
Q ss_pred HHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCc
Q 007101 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 490 (618)
Q Consensus 411 l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 490 (618)
+.+....+. + .-.+....++....++..+..|+-+++.+.++.+....+.+.|-
T Consensus 293 vseeaicea---------------------l-----iiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp 346 (524)
T KOG4413|consen 293 VSEEAICEA---------------------L-----IIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP 346 (524)
T ss_pred cCHHHHHHH---------------------H-----HHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC
Confidence 111111111 0 11334456778889999999999999999888887776555443
Q ss_pred --hHHHH-HHhcCCChhhhhhHHHHHHHhhhh
Q 007101 491 --LELLL-GLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 491 --l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
...++ +....+...-+..+.++|.+++..
T Consensus 347 paaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 22333 333333344567888899888865
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.5e-06 Score=87.49 Aligned_cols=326 Identities=16% Similarity=0.109 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
.+++....+|..+......... .-+.+.+.+++..++..-+..+.+.++.+.. ......+.+.+++..+....+
T Consensus 111 ~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 111 SVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNLSKAII 184 (569)
T ss_pred HHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHHHHHhc
Confidence 7777777777766642221111 1245777888888888889999999999984 555666777888999999988
Q ss_pred CCCHHHHHH-HHHHHHHHhcCChhHHHHHHhcC---CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 007101 260 SEDSAIHYE-AVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (618)
Q Consensus 260 ~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~ 335 (618)
+.+...++. +.-+.-..+.... ...+.. .+|.++..+.+....+|..+..+...+.+.-+...... ++
T Consensus 185 dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----ll 256 (569)
T KOG1242|consen 185 DKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LL 256 (569)
T ss_pred ccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hh
Confidence 776655554 2222211111100 111222 34445555556677788777666555543222222211 34
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhc
Q 007101 336 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 415 (618)
Q Consensus 336 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 415 (618)
+.++.-+....++.+.+++..++.++...+.+-...-...+|.+.+.+.+.+++++..+..+|.+++.-.+|... . .
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~--~ 333 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-Q--K 333 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-H--H
Confidence 555554444477888899999999988777777777888999999999999999999999999999866555431 1 1
Q ss_pred ccccccccchhhh-hHHHHHHHHH-HHHHHHHhhhhHHHHHHHHh----hCCHhHHHHHHHHHHhhcCCCcccc--ceec
Q 007101 416 GVQKLQDGEFIVQ-ATKDCVAKTL-KRLEEKIHGRVLNHLLYLMR----VAEKGVQRRVALALAHLCSPDDQRT--IFID 487 (618)
Q Consensus 416 ~~~~L~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~ 487 (618)
.++.|++..-... ...+|+-... ..+...+...-+..++++++ ..+..+++.++.++.|++.--+... ...-
T Consensus 334 ~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 334 IIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 2233332111111 1122211111 11111123344444555554 4578899999999999985442222 1112
Q ss_pred CCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhcc
Q 007101 488 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (618)
Q Consensus 488 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (618)
...+|.|-..+.+..|++|..++++|+.+-++...
T Consensus 414 ~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 414 PSLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 34566666777778999999999999988887543
No 80
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=3e-06 Score=90.02 Aligned_cols=369 Identities=17% Similarity=0.111 Sum_probs=253.9
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007101 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
.|.++..++.-+++++..-. ......+.++.+.++..+..+ .++..|...+.++...-...- -....+
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~Ddqd--------sVr~~a~~~~~~l~~l~~~~~--d~~~~~ 317 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQD--------SVREAAVESLVSLLDLLDDDD--DVVKSL 317 (759)
T ss_pred chhhHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchh--------hHHHHHHHHHHHHHHhcCCch--hhhhhh
Confidence 45788888888888873222 256677889999999998876 889988888888775322211 112346
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEV 287 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~ 287 (618)
.+.++...+++++.++.........+...-.. .......++....++++...+++.++..-...++.. +......+
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i 394 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNI 394 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccccccc
Confidence 68899999999999998888877777642111 333345577888888888888888888777666543 21222344
Q ss_pred HhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCc
Q 007101 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHN 366 (618)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~ 366 (618)
....+++.+..+..+.+..++...+....++....+ ..-.-....+.++..+++..+.|+.+..+.+..+-. .+..
T Consensus 395 ~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 395 PDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI 471 (759)
T ss_pred chhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence 455568888888888888888887776666643222 111113467888889999999999998887766644 3334
Q ss_pred chhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccc-cchhhhhHHHHHHHHHHHHHHHH
Q 007101 367 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEKI 445 (618)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~ 445 (618)
.........++.+..+.....++++.+..+.+..++.... ..++.....+.+.. ....+.+++..++..+..+...+
T Consensus 472 g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~ 549 (759)
T KOG0211|consen 472 GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF 549 (759)
T ss_pred cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh
Confidence 4556666778888888887899999999999998884432 33333332222222 22234566666666665555443
Q ss_pred -----hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 446 -----HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 446 -----~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
....++.++....+++.-.|...+.++..++.--... +.....+|.+.++..+++++||..++..|..+...
T Consensus 550 G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e--i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 550 GSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE--ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred CcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH--HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 4566777777777777888888888888765322222 12445799999999999999999999999988775
No 81
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.64 E-value=4.1e-06 Score=85.33 Aligned_cols=338 Identities=12% Similarity=0.038 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
.||..++-+|+.++ ....+.....+ .++..|-+-.+.+.. .....-+.+++.|+..............++
T Consensus 568 kVR~itAlalsalaeaa~Pygie~fD-sVlkpLwkgir~hrg--------k~laafLkAigyliplmd~eya~yyTrevm 638 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAATPYGIEQFD-SVLKPLWKGIRQHRG--------KELAAFLKAIGYLIPLMDAEYASYYTREVM 638 (1172)
T ss_pred hhhhHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHccC--------hHHHHHHHHHhhccccccHHHHHHhHHHHH
Confidence 78888998998888 22222111111 123333333333333 445556677777776554444434434455
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC--------HHHHHHHHHHHHHHhcCCh
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED--------SAIHYEAVGVIGNLVHSSP 281 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--------~~v~~~a~~~L~~l~~~~~ 281 (618)
-.+++-..++|.+.....+.++..+|. .+..-...+....++.+........ ..+...++.. +
T Consensus 639 lil~rEf~sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~i-a------- 709 (1172)
T KOG0213|consen 639 LILIREFGSPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEI-A------- 709 (1172)
T ss_pred HHHHHhhCCChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHH-H-------
Confidence 667777788999999999999999997 4555555566667777776554211 1111111111 1
Q ss_pred hHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHH
Q 007101 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALG 358 (618)
Q Consensus 282 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~l~~~~~~~~L~~lL~~~--~~~v~~~a~~~L~ 358 (618)
+.+.....+..++.=+.+..+..++..+.++.++...-.. ....-.+...+..++..++.. +..+...+..++.
T Consensus 710 ---~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~ 786 (1172)
T KOG0213|consen 710 ---AKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV 786 (1172)
T ss_pred ---HHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH
Confidence 1111222344455555666666666666655555321110 011112233456666666543 3334444444444
Q ss_pred HhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHH
Q 007101 359 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (618)
Q Consensus 359 ~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~ 438 (618)
|-.. .+.+-.-...+..++..|+++++.+|..|+..+..++..-.++.+...-|
T Consensus 787 ~~lg---~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~----------------------- 840 (1172)
T KOG0213|consen 787 NALG---GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMG----------------------- 840 (1172)
T ss_pred HHHh---hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHH-----------------------
Confidence 4221 11111112335567888999999999999999999874433332211100
Q ss_pred HHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc-cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhh
Q 007101 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (618)
Q Consensus 439 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 517 (618)
.+--.|.+.|....|++--..+.++..+..... .+..---.+.+|.|..+|++.++.++..+...+..++
T Consensus 841 ---------~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 841 ---------HLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIA 911 (1172)
T ss_pred ---------HhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHH
Confidence 111226777888888888877777777754432 1111123578999999999999999999999999999
Q ss_pred hhhccCC
Q 007101 518 NKATTLS 524 (618)
Q Consensus 518 ~~~~~~~ 524 (618)
...+.+.
T Consensus 912 drgpE~v 918 (1172)
T KOG0213|consen 912 DRGPEYV 918 (1172)
T ss_pred hcCcccC
Confidence 8766544
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.64 E-value=1.2e-05 Score=80.60 Aligned_cols=209 Identities=14% Similarity=0.025 Sum_probs=139.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+..++..+.+.++.++..+..+|..+-. .+..+.|+.++++.++.++..++.++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 6777778877777788877777775542 345677777888778888877776666531
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcch
Q 007101 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (618)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (618)
....+.+..+|.+.++.++..|+.+|+.+-. ...++.|...+.+.++.||..|++++..+..
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~------ 207 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS------ 207 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Confidence 1134567777777788888888888877742 1245566677778888888888877766532
Q ss_pred hhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 007101 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (618)
...+..+..+...........+..++... .. ..
T Consensus 208 ----~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~------------------------------------------~~ 240 (410)
T TIGR02270 208 ----RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG------------------------------------------PD 240 (410)
T ss_pred ----HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc------------------------------------------hh
Confidence 12344555534333333333333333332 11 13
Q ss_pred hHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhh
Q 007101 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (618)
.+..|..+++++. ++..++.+|+.+- ....++.|+..+.+. .++..|..++..|+-
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 5667888888765 8999999999773 445789999988754 499999999998886
No 83
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.62 E-value=2.1e-05 Score=82.58 Aligned_cols=259 Identities=17% Similarity=0.112 Sum_probs=138.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-HHHHHHh----c-----CCHHHHHHhhcCCC----------------
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLA----A-----GALQPVIGLLSSCC---------------- 304 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~----~-----~~l~~L~~ll~~~~---------------- 304 (618)
...+++.+++++++++.+|..+|++++.++-. ....+.+ . =.+..|...+....
T Consensus 859 ~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~ 938 (1233)
T KOG1824|consen 859 KDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLF 938 (1233)
T ss_pred HHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 44566778889999999999999999885432 1111110 0 01222222222211
Q ss_pred -------hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHH
Q 007101 305 -------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 377 (618)
Q Consensus 305 -------~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~ 377 (618)
...|.-.+.+|+.++..+|+ ..+|.|-..+.++.+..|..+..++.-........-.......+.
T Consensus 939 k~cE~~eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig 1010 (1233)
T KOG1824|consen 939 KHCECAEEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIG 1010 (1233)
T ss_pred HhcccchhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHH
Confidence 11223333344444433332 356777778888888888877777766555444433444455677
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccc--------------cchhhh---------hHHHHH
Q 007101 378 PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD--------------GEFIVQ---------ATKDCV 434 (618)
Q Consensus 378 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~--------------~~~~~~---------~~~~~~ 434 (618)
.++.++++++.+|++.|+.++-..+.+.++.-.=.-...++.|.+ |-|++. ...+|+
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcm 1090 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECM 1090 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHH
Confidence 899999999999999999999998877554322111122222221 222221 223343
Q ss_pred HHHHHHHHHHH-hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhc------------CC
Q 007101 435 AKTLKRLEEKI-HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG------------ST 501 (618)
Q Consensus 435 ~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~------------~~ 501 (618)
..-+..-.... -..++..+..-|.+ ...++.-....|..++.-.+....-.-...+++|-.... +.
T Consensus 1091 ytLLdscld~~dit~Fl~~~~~GL~D-hydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek 1169 (1233)
T KOG1824|consen 1091 YTLLDSCLDRLDITEFLNHVEDGLED-HYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEK 1169 (1233)
T ss_pred HHHHHhhhhhccHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHH
Confidence 32221111111 12223333333333 367888877788877654443221111122333332222 12
Q ss_pred ChhhhhhHHHHHHHhhh
Q 007101 502 NPKQQLDGAVALFKLAN 518 (618)
Q Consensus 502 ~~~v~~~a~~~L~~L~~ 518 (618)
..+.+..|.+++..|..
T Consensus 1170 ~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1170 QDELKRSALRAVAALLT 1186 (1233)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35678889999988854
No 84
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=1.5e-06 Score=91.62 Aligned_cols=259 Identities=14% Similarity=0.148 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHhcc---C-hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHH
Q 007101 78 AAAKRATHVLAELAK---N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~---~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (618)
+.|+.|.+.-..... + |+. +|..++.|-+. --|..|+..|+.+- ..+-....
T Consensus 451 teQLTAFevWLd~gse~r~PPeQ---------LPiVLQVLLSQ--------------vHRlRAL~LL~RFLDlGpWAV~L 507 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESRTPPEQ---------LPIVLQVLLSQ--------------VHRLRALVLLARFLDLGPWAVDL 507 (1387)
T ss_pred HHHHHHHHHHHHhccccCCChHh---------cchHHHHHHHH--------------HHHHHHHHHHHHHhccchhhhhh
Confidence 356666666555443 1 222 56666655442 23667888888888 66666677
Q ss_pred HHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-C--CHHHHHHHHH
Q 007101 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-T--DTKVQRAAAG 229 (618)
Q Consensus 153 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~--~~~v~~~a~~ 229 (618)
....|+.|+.+++|++... +++...+.+-..+..-++..+..+++.++-...++.+.. + +++-+..|+.
T Consensus 508 aLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAF 579 (1387)
T KOG1517|consen 508 ALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAF 579 (1387)
T ss_pred hhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHH
Confidence 7788999999999999877 888888888888877788888889988888888888876 2 3688999999
Q ss_pred HHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHH
Q 007101 230 ALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (618)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 308 (618)
+|+.++.+....++...+.+.+...+..|.++ .+-++.+++-||+.|-.+.+..+=.-...++...|..+|.++-+++|
T Consensus 580 VLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVR 659 (1387)
T KOG1517|consen 580 VLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVR 659 (1387)
T ss_pred HHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHH
Confidence 99999988788888888999999999999985 68899999999999988877766666677889999999999999999
Q ss_pred HHHHHHHHHHhcCC----hhhHHHH------------HhcCCh---HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcc
Q 007101 309 REAALLLGQFAATD----SDCKVHI------------VQRGAV---RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (618)
Q Consensus 309 ~~a~~~L~~l~~~~----~~~~~~l------------~~~~~~---~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (618)
..|..+|+.+.... ++..... .+.-+. ..++.++++..+-++.+..-+|..+..+....
T Consensus 660 aAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 660 AAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 99999999997642 1111111 122122 36777888899999999999998887755443
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=5.8e-05 Score=77.11 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=123.0
Q ss_pred HhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHH
Q 007101 75 ADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (618)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (618)
+|+.++..|+..++.|++ +|.+--. .-|.+..+|...+.. -+....++.+++|+ -.|.....
T Consensus 193 pDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNN-----------WmLIKiiKLF~aLtplEPRLgKK 256 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNN-----------WVLIKLLKLFAALTPLEPRLGKK 256 (877)
T ss_pred CCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCC-----------eehHHHHHHHhhccccCchhhhh
Confidence 377888999999999998 7776433 357788888665542 56677888888888 77765443
Q ss_pred HHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHH--HhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHH
Q 007101 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT--NLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 230 (618)
Q Consensus 153 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~--~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (618)
.++.|.+++.+.... .+...|+.++. +++.+.++....+ .-+++.|-.++.++|+.++.-++-+
T Consensus 257 -----Lieplt~li~sT~Am-------SLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 257 -----LIEPITELMESTVAM-------SLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred -----hhhHHHHHHHhhHHH-------HHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHH
Confidence 578999999887653 66666766664 3444433332222 2356778888899999999999999
Q ss_pred HHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 007101 231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (618)
++.+....+..... --+.+++.|.+.|+.+|..|+..|..++..
T Consensus 323 m~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 323 MSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 99998644443322 246688999999999999999999988643
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.3e-05 Score=79.19 Aligned_cols=369 Identities=16% Similarity=0.100 Sum_probs=210.1
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHH
Q 007101 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (618)
++..|+.-+..+.. .+|+....+|..+....+... .....+.+.+++..... .-+..
T Consensus 97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~--------~~~~~ 153 (569)
T KOG1242|consen 97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKI--------AERAG 153 (569)
T ss_pred HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccH--------HHHhh
Confidence 45566666666655 889998888877662221111 11235566666664433 66777
Q ss_pred HHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHhhcCCcccHHHHHhcCC---HHHHHHhhcC
Q 007101 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA-AAGALRTLAFKNDENKNQIVECNA---LPTLILMLRS 260 (618)
Q Consensus 185 a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~~~---~~~L~~ll~~ 260 (618)
+.+.+..+..+.. -..+.+.+++..+...+++.....++. ++.+....+..-. ...+..+ ++.++.-..+
T Consensus 154 aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 154 AAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGD 227 (569)
T ss_pred hhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhc
Confidence 7888887776433 234556778888888888765544443 3333332222111 1122333 4444444557
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 007101 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (618)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~ 340 (618)
..+.+|..|..+...+...-+...-. -+++.++.-+....|..+..++..++.++... ..........++|.+.+
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSE 302 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHH
Confidence 78889998888887775543322111 14555555555558899999999999887443 34444556789999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh----cCCcchhHHHhhcc
Q 007101 341 MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA----DNEDNVADFIRVGG 416 (618)
Q Consensus 341 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~----~~~~~~~~l~~~~~ 416 (618)
.|-+..+++|..+..+|.+++.--+|... ...++.|++.+.++...+.+ +...|..=. ..+.....+
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLalm----- 373 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLALM----- 373 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHHH-----
Confidence 99999999999999999999875444331 12456677777665433322 222222111 001111111
Q ss_pred cccccccch-hhhhHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCcccccee
Q 007101 417 VQKLQDGEF-IVQATKDCVAKTLKRLEEK---------IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486 (618)
Q Consensus 417 ~~~L~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 486 (618)
++.|.++.. .....+......+.|+... +-..++|.+-..+.++.|++|..+.++|+.+-........
T Consensus 374 vpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-- 451 (569)
T KOG1242|consen 374 VPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-- 451 (569)
T ss_pred HHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc--
Confidence 111111111 1112222223333333322 2334555555666667899999999999887644432221
Q ss_pred cCCchHHHHHHhcCC-ChhhhhhHHHHHHHhhhh
Q 007101 487 DGGGLELLLGLLGST-NPKQQLDGAVALFKLANK 519 (618)
Q Consensus 487 ~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~ 519 (618)
.+.+|.+.....+. ...-+.-++..|.....+
T Consensus 452 -~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 452 -DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred -cccccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence 56677777777643 223345556666655554
No 87
>PF05536 Neurochondrin: Neurochondrin
Probab=98.52 E-value=0.00014 Score=76.18 Aligned_cols=202 Identities=14% Similarity=0.160 Sum_probs=137.6
Q ss_pred HHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccC-h---hhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHH
Q 007101 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E---EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v 132 (618)
..+.+.+.+|++. + | +.++.++-.+..+..+ + ..++.+.+.=+.+.|-++|.++..... + .....
T Consensus 5 ~~l~~c~~lL~~~----~-D-~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~--~---~~~~~ 73 (543)
T PF05536_consen 5 ASLEKCLSLLKSA----D-D-TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSD--C---PPEEY 73 (543)
T ss_pred HHHHHHHHHhccC----C-c-HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCC--C---CHHHH
Confidence 3456677777766 1 3 3588899999999883 3 234456676668889999988654211 0 12367
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHH
Q 007101 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (618)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (618)
+..|..+|+.++..|+....---.+-||.|++++...... ++...|+.+|..++. .+..+..+.+.|+++.|
T Consensus 74 ~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~-------~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 74 LSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDL-------ETVDDALQCLLAIAS-SPEGAKALLESGAVPAL 145 (543)
T ss_pred HHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCch-------hHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHH
Confidence 8889999999998777653333345699999999887762 788899999999995 77888889999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh-----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 007101 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (618)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (618)
.+.+.+ .+.....++.++.+++.... .+...+ ..+++.+...+.......+...+..|..+....
T Consensus 146 ~ei~~~-~~~~~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 146 CEIIPN-QSFQMEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHh-CcchHHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 999987 55667788888888876322 111101 123344444444444455566666666664443
No 88
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.6e-05 Score=70.81 Aligned_cols=244 Identities=18% Similarity=0.179 Sum_probs=163.4
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007101 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (618)
+-.++.++.+.+. .++..|+..+..++.. ..+.... ....++.+.+++...++ ...|+.+|.|++.
T Consensus 5 l~elv~ll~~~sP--------~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq- 71 (353)
T KOG2973|consen 5 LVELVELLHSLSP--------PVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ- 71 (353)
T ss_pred HHHHHHHhccCCh--------HHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-
Confidence 3456777777766 8999999999988875 2222222 13356788889887766 6678899999997
Q ss_pred CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh------cCCHHHHHHhhcCCCh--hHHH
Q 007101 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCS--ESQR 309 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~--~~~~ 309 (618)
++..++.++.. ++..++..+.++........+..|.|++.........+.. .|.+..+......+.. .-..
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ 150 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFH 150 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchh
Confidence 67777777766 7888888888887788889999999998875554333322 3445555555554322 2345
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCChH--HHHHhhCCCCHHHHH-HHHHHHHHhhcCCCcchhhHhcC--CHHHH-HHh-
Q 007101 310 EAALLLGQFAATDSDCKVHIVQRGAVR--PLIEMLQSPDVQLRE-MSAFALGRLAQDMHNQAGIAHNG--GLVPL-LKL- 382 (618)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~l~~~~~~~--~L~~lL~~~~~~v~~-~a~~~L~~l~~~~~~~~~l~~~~--~l~~L-~~l- 382 (618)
..+.++.|++. .+..+..+.+...++ .++. +.+.+..+|. ..+++|.|+|.+...+..+...+ .++.+ +.+
T Consensus 151 ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPla 228 (353)
T KOG2973|consen 151 YLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLA 228 (353)
T ss_pred HHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcC
Confidence 66778888864 466666666554332 2322 3335666665 57788999999887777665532 12222 122
Q ss_pred -------------------h-----cCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccc
Q 007101 383 -------------------L-----DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 418 (618)
Q Consensus 383 -------------------l-----~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~ 418 (618)
+ ..+++.++..-+.+|..|+.....+..+...|+-+
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp 288 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP 288 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH
Confidence 2 23467899999999999998888888887766443
No 89
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.47 E-value=8.6e-05 Score=73.66 Aligned_cols=246 Identities=17% Similarity=0.163 Sum_probs=169.1
Q ss_pred ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCC
Q 007101 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (618)
Q Consensus 93 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 172 (618)
++..+..+.-....+.+..++-+++. +||..+.+++..+..+++.-..+.+.+.--.++.-|......
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~------------~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSK------------EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcH------------HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC
Confidence 44444444434445555544434445 999999999999998888888888888766777777665543
Q ss_pred CCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHH
Q 007101 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (618)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 252 (618)
. .-+++|+..+..+.......+ ....|.+..++.+.++.+...+..|+.+|+.++-.+| +.+..+|++.
T Consensus 82 ~------~ER~QALkliR~~l~~~~~~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~ 150 (371)
T PF14664_consen 82 D------VEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIR 150 (371)
T ss_pred h------HHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHH
Confidence 2 678899999998887533222 2245778999999999999999999999999997443 4567899999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC-------Ch--hHHHHHHHHHHHHhcCCh
Q 007101 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CS--ESQREAALLLGQFAATDS 323 (618)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~ 323 (618)
.|++.+.++..++....+.++..+.. ++..++.+...--+..++.-+.+. +. +....+..++..+-..-+
T Consensus 151 ~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~ 229 (371)
T PF14664_consen 151 VLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP 229 (371)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC
Confidence 99999888766788888888888854 466555555433344444444332 12 223344445555543333
Q ss_pred hhHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 324 DCKVHIVQR-GAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 324 ~~~~~l~~~-~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
.....-.+. ..+..|+..|..+++++|......+..+-.
T Consensus 230 GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 230 GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 322111122 578889999999999999999999888875
No 90
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00036 Score=72.29 Aligned_cols=360 Identities=17% Similarity=0.128 Sum_probs=228.2
Q ss_pred HHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHH
Q 007101 108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD 187 (618)
Q Consensus 108 ~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~ 187 (618)
-|.++|.+.... ..+++.-++++.++.+.... ...|..++.....+. ++++..--
T Consensus 39 dL~~lLdSnkd~-----------~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~--------EVKkLVyv 93 (968)
T KOG1060|consen 39 DLKQLLDSNKDS-----------LKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNI--------EVKKLVYV 93 (968)
T ss_pred HHHHHHhccccH-----------HHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCH--------HHHHHHHH
Confidence 367788776552 55666667777777544432 246777777777665 78777666
Q ss_pred HHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 007101 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267 (618)
Q Consensus 188 ~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 267 (618)
-|...+...++.. .--|..+-+-|+++++.+|..|+++|..+=- +..... ++-.+-+...+..+-||.
T Consensus 94 YLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI-----~llAIk~~~~D~s~yVRk 161 (968)
T KOG1060|consen 94 YLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPI-----MLLAIKKAVTDPSPYVRK 161 (968)
T ss_pred HHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHH-----HHHHHHHHhcCCcHHHHH
Confidence 6666676555421 1246788889999999999988888776642 111111 122233456688999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCH
Q 007101 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347 (618)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~ 347 (618)
.|+.+|-.|-+-.++.... ++..+-.+|.+.++.+.-.|+.+...+| ++....+ ++-...++.+|.+-+.
T Consensus 162 ~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evC---PerldLI--HknyrklC~ll~dvde 231 (968)
T KOG1060|consen 162 TAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLI--HKNYRKLCRLLPDVDE 231 (968)
T ss_pred HHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHh--hHHHHHHHhhccchhh
Confidence 9999999997666665554 4566778889999999999999988887 4443333 4457888888887666
Q ss_pred HHHHHHHHHHHHhhcCCCcch-------------------------hhHhcCCHHHHH----HhhcCCChhHHHHHHHHH
Q 007101 348 QLREMSAFALGRLAQDMHNQA-------------------------GIAHNGGLVPLL----KLLDSKNGSLQHNAAFAL 398 (618)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~-------------------------~l~~~~~l~~L~----~ll~~~~~~v~~~a~~~L 398 (618)
--+.....+|..-|+..-... -.....-+..|+ .++.+.++.|..+++.+.
T Consensus 232 WgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~ 311 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF 311 (968)
T ss_pred hhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH
Confidence 666666677776664321100 001111122233 456778999999999999
Q ss_pred HHhhcCCcchhHHHh--------hcccccccc-----------cchh----------hhhHHHHHHH--HHHHHHHH-Hh
Q 007101 399 YGLADNEDNVADFIR--------VGGVQKLQD-----------GEFI----------VQATKDCVAK--TLKRLEEK-IH 446 (618)
Q Consensus 399 ~~l~~~~~~~~~l~~--------~~~~~~L~~-----------~~~~----------~~~~~~~~~~--~~~~~~~~-~~ 446 (618)
+.++-..+. ..+.+ ...++..+- ..|. .++...++.+ .+.++... --
T Consensus 312 y~lAP~~~~-~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni 390 (968)
T KOG1060|consen 312 YHLAPKNQV-TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNI 390 (968)
T ss_pred HhhCCHHHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccH
Confidence 999843322 11111 111111100 0000 0011111111 12222211 14
Q ss_pred hhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 447 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
..+++.+....++++..+...++.+|+.++..... +....+.-|+.++++.+..|..+++..+..|.+.
T Consensus 391 ~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 391 SEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 57888889999999888888899999988754331 2334688899999999999999999888888876
No 91
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2.9e-05 Score=80.40 Aligned_cols=384 Identities=18% Similarity=0.197 Sum_probs=235.1
Q ss_pred HHHHHH-HHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCC
Q 007101 80 AKRATH-VLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNG 157 (618)
Q Consensus 80 ~~~a~~-~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g 157 (618)
+..|++ .++.+..+.+. ++..|-++......+. +++..+---+.+.+ ..|...
T Consensus 30 r~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl------------elKKlvyLYl~nYa~~~P~~a------- 84 (734)
T KOG1061|consen 30 RKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL------------ELKKLVYLYLMNYAKGKPDLA------- 84 (734)
T ss_pred HHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCc------------hHHHHHHHHHHHhhccCchHH-------
Confidence 334443 45555555443 3445667777777766 78888888888888 555532
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (618)
+-.+-.++++..++ .+.++..|++.++.+-. +..- .-...++...+++.++.+|..+.-++..+-
T Consensus 85 -~~avnt~~kD~~d~-----np~iR~lAlrtm~~l~v--~~i~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~-- 149 (734)
T KOG1061|consen 85 -ILAVNTFLKDCEDP-----NPLIRALALRTMGCLRV--DKIT-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF-- 149 (734)
T ss_pred -HhhhhhhhccCCCC-----CHHHHHHHhhceeeEee--hHHH-----HHHHHHHHHhccCCChhHHHHHHHHHHHhh--
Confidence 22233344444332 23677777777665443 1111 124578899999999999999988888775
Q ss_pred CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 007101 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (618)
....+...+.|+++.|-.++.+.++.|...|+.+|..+...+++.....+....+..++..+..++.-.+...+.++.+
T Consensus 150 -~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 150 -DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred -cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 4555667789999999999999999999999999999977655311111222234444454544433333333334433
Q ss_pred HhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007101 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 397 (618)
Q Consensus 318 l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 397 (618)
-...++ ... ..++..+...|.+.++.+...+...+.++...............-++++.++.+.+ +++..++.=
T Consensus 229 y~p~d~---~ea--~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrN 302 (734)
T KOG1061|consen 229 YVPKDS---REA--EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRN 302 (734)
T ss_pred cCCCCc---hhH--HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhh
Confidence 332222 111 23567788888888888888888888888765444333444456667777777766 666655544
Q ss_pred HHHhhcCCcchhHHHhhccc---ccccccchhhhhHHHHHHHHH--HHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHH
Q 007101 398 LYGLADNEDNVADFIRVGGV---QKLQDGEFIVQATKDCVAKTL--KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (618)
Q Consensus 398 L~~l~~~~~~~~~l~~~~~~---~~L~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 472 (618)
+.-+...- ..+.....- =...+..+.-..-.+|+.... .++ .+++..+...-..-+.+....+++++
T Consensus 303 i~lil~~~---p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl-----~qvl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 303 INLILQKR---PEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANL-----AQVLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred HHHHHHhC---hHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHH-----HHHHHHHHHhhhhhCHHHHHHHHHHh
Confidence 44333221 112222110 011111111111123322211 111 22566666766777899999999999
Q ss_pred HhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhccC
Q 007101 473 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 523 (618)
Q Consensus 473 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 523 (618)
++++..-+.. ++.++.|+++++.+..-+..++...+..+.++-+..
T Consensus 375 g~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 375 GRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred hhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 9997654433 668999999999888888888999999999886544
No 92
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.45 E-value=1.2e-05 Score=80.45 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=198.7
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhh---HHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007101 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH---QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
|...+.+|++..+ .+|.+|+...+.|+---.. ...+...|. .|...|..... ++.
T Consensus 606 vStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~yp--------EvL 663 (975)
T COG5181 606 VSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYP--------EVL 663 (975)
T ss_pred HHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccH--------HHH
Confidence 4456677777776 8999999999888711111 112222221 12233333332 666
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc---HHHHHhcCCHHHHHHhhc
Q 007101 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLR 259 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~L~~ll~ 259 (618)
-..+.++..+.....-..-+--..|++|.|..+|++....+..+....+..++...++. ++-+ .+.--|+.+|+
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lk 740 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLK 740 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHH
Confidence 66666665555422111011112578999999999999999999999999999865553 1112 12345788888
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 007101 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~ 339 (618)
+.+.++|+.|...++.++..- .-++++..|++-|...+-..+.-...+++-.+..+.. ..++|.|+
T Consensus 741 s~nKeiRR~A~~tfG~Is~ai-------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm 806 (975)
T COG5181 741 SWNKEIRRNATETFGCISRAI-------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLM 806 (975)
T ss_pred HhhHHHHHhhhhhhhhHHhhc-------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHH
Confidence 999999999999999985431 1122344454444433333333333344444322111 23577777
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhccccc
Q 007101 340 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 419 (618)
Q Consensus 340 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~ 419 (618)
.=-..++..|+.-.+.+++.+-..-.+...-.-....|.|...+.+.++..|..|...+..|+.+.... |..+.
T Consensus 807 ~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt------g~eda 880 (975)
T COG5181 807 SDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT------GDEDA 880 (975)
T ss_pred hcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc------ccHHH
Confidence 766778889999888888877654333322222344566778888899999999999999998774331 10000
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCc-hHHHHHHh
Q 007101 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG-LELLLGLL 498 (618)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-l~~L~~ll 498 (618)
--.++.-|.+.+-.+.|.++......+-.++..- ..|. +.-+++=+
T Consensus 881 --------------------------~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~l-------g~g~~m~Yv~qGL 927 (975)
T COG5181 881 --------------------------AIHLLNLLWPNILEPSPHVIQSFDEGMESFATVL-------GSGAMMKYVQQGL 927 (975)
T ss_pred --------------------------HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHhc
Confidence 0012333444444566777666666555554321 2222 33445556
Q ss_pred cCCChhhhhhHHHHHHHhhhhhcc
Q 007101 499 GSTNPKQQLDGAVALFKLANKATT 522 (618)
Q Consensus 499 ~~~~~~v~~~a~~~L~~L~~~~~~ 522 (618)
-++...|| .+-|...|.+.....
T Consensus 928 FHPs~~VR-k~ywtvyn~myv~~~ 950 (975)
T COG5181 928 FHPSSTVR-KRYWTVYNIMYVFDS 950 (975)
T ss_pred cCchHHHH-HHHHHHHhhhhhccc
Confidence 67777776 467777777776443
No 93
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.42 E-value=9.1e-05 Score=74.38 Aligned_cols=244 Identities=17% Similarity=0.044 Sum_probs=168.3
Q ss_pred CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007101 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
.+++.|+..|...+. ++++..++.++... ..+. ++..++..|.+.+. .++.
T Consensus 54 ~a~~~L~~aL~~d~~-----------~ev~~~aa~al~~~-~~~~---------~~~~L~~~L~d~~~--------~vr~ 104 (410)
T TIGR02270 54 AATELLVSALAEADE-----------PGRVACAALALLAQ-EDAL---------DLRSVLAVLQAGPE--------GLCA 104 (410)
T ss_pred hHHHHHHHHHhhCCC-----------hhHHHHHHHHHhcc-CChH---------HHHHHHHHhcCCCH--------HHHH
Confidence 357888888854332 17776666555322 1111 27888899988765 7888
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH
Q 007101 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (618)
.+...|+.+-. ....+.|+.++++.++.++..++.++.... ....+.+..+|++.++
T Consensus 105 aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~ 161 (410)
T TIGR02270 105 GIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDA 161 (410)
T ss_pred HHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCH
Confidence 88888875432 345678899999999999988887776522 2345788999999999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC
Q 007101 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~ 343 (618)
.|+..|+++|+.+-.. ..++.|...+.+.++.++..|+.++..+- ++. .+..+.....
T Consensus 162 ~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG--~~~---------A~~~l~~~~~ 219 (410)
T TIGR02270 162 LVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAG--SRL---------AWGVCRRFQV 219 (410)
T ss_pred HHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC--CHh---------HHHHHHHHHh
Confidence 9999999999998432 25667888899999999999999998773 222 2445555444
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhccccccccc
Q 007101 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 423 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~ 423 (618)
.........+..++... .. ...++.|..+++++. ++..++.+|..+-..
T Consensus 220 ~~g~~~~~~l~~~lal~-~~---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------------- 268 (410)
T TIGR02270 220 LEGGPHRQRLLVLLAVA-GG---------PDAQAWLRELLQAAA--TRREALRAVGLVGDV------------------- 268 (410)
T ss_pred ccCccHHHHHHHHHHhC-Cc---------hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc-------------------
Confidence 44433333333333333 11 146777888888754 889999999876422
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC
Q 007101 424 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (618)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 478 (618)
..++.|+..+.++. ++..|..++..++.-
T Consensus 269 ------------------------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 269 ------------------------EAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred ------------------------chHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 24566777666544 888999999988753
No 94
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.40 E-value=4.3e-06 Score=66.75 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
+.+++...-|+|++.+|.+-..+.+..++..++..|...+. .+.+.++..|+|+|. ++.+.+.+.+.+++|
T Consensus 32 eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne--------~LvefgIgglCNlC~-d~~n~~~I~ea~g~p 102 (173)
T KOG4646|consen 32 EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE--------LLVEFGIGGLCNLCL-DKTNAKFIREALGLP 102 (173)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH--------HHHHHhHHHHHhhcc-ChHHHHHHHHhcCCc
Confidence 88999999999999999999999999999999999999887 899999999999999 677788899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007101 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
.++..+.++...+...++..+..++..+...++.+....++..+...-
T Consensus 103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 999999999999999999999999987777777776655555554443
No 95
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.0045 Score=66.38 Aligned_cols=289 Identities=16% Similarity=0.124 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHh----cCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHH
Q 007101 223 VQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (618)
Q Consensus 223 v~~~a~~~L~~l~~~~~~~~~~~~~----~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 297 (618)
-...++.+|.|+...+|+....+.. -|.++.+...+. ..++.++..|+..+..++.. ..+...+...+.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHH
Confidence 4467888999998878866554432 366788888777 56788999999998888665 55667888888899999
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCcch--hhHhcC
Q 007101 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQA--GIAHNG 374 (618)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~--~l~~~~ 374 (618)
.+|.+. +..+..++.+|..+++ ++........+|++..+.+++.. .++..|..++..++.|..+.-... .+.--.
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 988865 6688899999999974 46777777889999988887764 678999999999999987543222 121122
Q ss_pred CHHH-HHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhc-------cccccc-------------ccchhhh-----
Q 007101 375 GLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG-------GVQKLQ-------------DGEFIVQ----- 428 (618)
Q Consensus 375 ~l~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~-------~~~~L~-------------~~~~~~~----- 428 (618)
++|. +...+.++. +++..++..-..+++ .++... .+.... +...-.+
T Consensus 1898 FLP~~f~d~~RD~P----EAaVH~fE~T~EnPE---LiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSP----EAAVHMFESTSENPE---LIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred hchHHHHHHHhcCH----HHHHHHHhccCCCcc---cccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence 3332 334443322 223333322222211 111000 000000 0000000
Q ss_pred -hHHHHHHH-HHHHH-----------HHHHhhhhHHHHHHHHhhCCHhHHH--HHHHHHHh-hcCCCccccceecCCchH
Q 007101 429 -ATKDCVAK-TLKRL-----------EEKIHGRVLNHLLYLMRVAEKGVQR--RVALALAH-LCSPDDQRTIFIDGGGLE 492 (618)
Q Consensus 429 -~~~~~~~~-~~~~~-----------~~~~~~~~l~~L~~ll~~~~~~v~~--~a~~~L~~-l~~~~~~~~~~~~~~~l~ 492 (618)
...+|... ...+. ...+-.+++..++++|..++++-.. .-..++.. +...+.-...+-..|.+|
T Consensus 1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylP 2050 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLP 2050 (2235)
T ss_pred hhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchH
Confidence 00011000 00010 1124556778888888877554222 11122222 334455555556789999
Q ss_pred HHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 493 LLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 493 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
.++..+...+..+-..|.+.|..|+.+..
T Consensus 2051 K~~~Am~~~n~s~P~SaiRVlH~Lsen~~ 2079 (2235)
T KOG1789|consen 2051 KFCTAMCLQNTSAPRSAIRVLHELSENQF 2079 (2235)
T ss_pred HHHHHHHhcCCcCcHHHHHHHHHHhhccH
Confidence 99999988777777888899988887644
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.38 E-value=0.00053 Score=68.16 Aligned_cols=245 Identities=13% Similarity=0.067 Sum_probs=166.8
Q ss_pred CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC--CCHH
Q 007101 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTK 222 (618)
Q Consensus 145 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~ 222 (618)
..|+.+....-....+.+..++-.++. +++..+.+++..+.. ++..-..+.+.+.--.++.-+.. .+..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 444444444433344555544444434 899999999999988 45555556666665666666654 3456
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC
Q 007101 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (618)
Q Consensus 223 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 302 (618)
-|..|++.++.+.... ...+. ...|++..++.+..++++..+..|+.+|..++-.+| +.+...|++..+.+.+.+
T Consensus 84 ER~QALkliR~~l~~~-~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEIK-KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHhc-CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh
Confidence 7889999999988632 22222 345788999999999999999999999999988877 457789999999999988
Q ss_pred CChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC-------CH--HHHHHHHHHHHHhhcCCCcchhhHhc
Q 007101 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------DV--QLREMSAFALGRLAQDMHNQAGIAHN 373 (618)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~l~~~ 373 (618)
+..+.....+.++..+. +.|..+..+...--+..++.-+.+. +. +....+..++..+-++=.+--.+...
T Consensus 159 ~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 76677788888888886 5566666555433344444433322 22 23345555565555432222222222
Q ss_pred --CCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007101 374 --GGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 374 --~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
.++..|+..+..+++++|...+..+..+.+-
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 4788899999999999999999999998754
No 97
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.32 E-value=3.7e-07 Score=86.08 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=73.4
Q ss_pred cccchhHhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceec----CCCCHHHHHHHHHHHhC
Q 007101 535 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFDEF 610 (618)
Q Consensus 535 ~~~~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~----~~~~~~~~~~~l~~~Yt 610 (618)
...++...++.++.-+||++..-|.+++.||.-|+ .|+||++||.|.|+|++...|.+ ++|+..+|..++.-+|.
T Consensus 55 t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~ 133 (488)
T KOG4682|consen 55 TQKYIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYR 133 (488)
T ss_pred HHHHHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhh
Confidence 34556677888999999999999999999999998 89999999999999999987776 46999999999999999
Q ss_pred CccccCC
Q 007101 611 CAFNLSS 617 (618)
Q Consensus 611 ~~~~~~~ 617 (618)
++++|+.
T Consensus 134 dEveI~l 140 (488)
T KOG4682|consen 134 DEVEIKL 140 (488)
T ss_pred hheeccH
Confidence 9999864
No 98
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.31 E-value=4e-07 Score=93.33 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=55.7
Q ss_pred CCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCC------------CCCceecCCCCHHHHHHHHHHHhCCcc
Q 007101 547 ATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREK------------DARDIEIPNIRWEVFELMMRFDEFCAF 613 (618)
Q Consensus 547 ~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~------------~~~~i~~~~~~~~~~~~~l~~~Yt~~~ 613 (618)
..+.||+|.|+++.|++||.||++||++|+++|-..-+.+ ....|.+.+++|..|+.+|+|+||+..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 3568999999999999999999999999999996533221 223556789999999999999999853
No 99
>PF05536 Neurochondrin: Neurochondrin
Probab=98.31 E-value=0.0015 Score=68.71 Aligned_cols=241 Identities=16% Similarity=0.150 Sum_probs=162.2
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChh---hHHHHHhCCcHHHHHHHHhhccCCCCcccchHH
Q 007101 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE---HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (618)
+..-+.+|+..+. +-|-.++-.+.++. .++. .++.+.+.=+.+.+-++|+....+... +....
T Consensus 7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~ 73 (543)
T PF05536_consen 7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEY 73 (543)
T ss_pred HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHH
Confidence 4556677877764 66778888888888 3332 234566666678888899886543322 23378
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC
Q 007101 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (618)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 260 (618)
+..++.+|..+|. .|+....-.-.+-||.+++.+.+.+. ++...++.+|..++. .++.++.+.+.|.++.|.+.+.+
T Consensus 74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh
Confidence 8889999999998 55443222224578999999988776 999999999999995 89999999999999999999887
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHH---HHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh-HHHH----Hhc
Q 007101 261 EDSAIHYEAVGVIGNLVHSSPNIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHI----VQR 332 (618)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~l----~~~ 332 (618)
.+.....|+.++.+++....... ..-.-..+++.+...+.......+...+..|..+-...+.. .... .-.
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 55667888888888866533110 00001124555666666556667778888888887554211 1111 122
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 007101 333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 333 ~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 362 (618)
.+...+..+|++ ..+.-|..++.....|..
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344555556665 466667777666666553
No 100
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.0003 Score=74.83 Aligned_cols=354 Identities=16% Similarity=0.151 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHhcc-ChhhHHHHHh----CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHH
Q 007101 79 AAKRATHVLAELAK-NEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (618)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~----~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (618)
-...++.+|.|+.+ +|+....|.. .|-.+.+..+|..... |.++..|+..+..+..+.++...+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~-----------~~iq~LaL~Vi~~~Tan~~Cv~~~ 1809 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH-----------PKLQILALQVILLATANKECVTDL 1809 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC-----------chHHHHHHHHHHHHhcccHHHHHH
Confidence 45677899999987 7876665554 4777888888877655 389999999999888899999999
Q ss_pred HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHH
Q 007101 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALR 232 (618)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~ 232 (618)
+..|.+..|+.+|.+.. ..+..++.+|..|+. ++.......+.|++..+..++ .+.++..|..++..+.
T Consensus 1810 a~~~vL~~LL~lLHS~P---------S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHSQP---------SMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred HhhhHHHHHHHHHhcCh---------HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 99999999999998763 788999999999998 666666667788888777655 4566889999999999
Q ss_pred HhhcCC---cccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-----ChhHHHHHHhcCCHHHH-HHhhcC-
Q 007101 233 TLAFKN---DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-----SPNIKKEVLAAGALQPV-IGLLSS- 302 (618)
Q Consensus 233 ~l~~~~---~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~l~~L-~~ll~~- 302 (618)
.+..+. |...-.++. -.-+.++..++++. +.++.++-.-... ++..++.+ .+.+..+ .++...
T Consensus 1880 Kl~Adkl~GPrV~ITL~k-FLP~~f~d~~RD~P----EAaVH~fE~T~EnPELiWn~~~r~kv--S~~i~tM~~~~y~~Q 1952 (2235)
T KOG1789|consen 1880 KLQADKLTGPRVTITLIK-FLPEIFADSLRDSP----EAAVHMFESTSENPELIWNEVTRQKV--SGIIDTMVGKLYEQQ 1952 (2235)
T ss_pred HhhhccccCCceeeehHH-hchHHHHHHHhcCH----HHHHHHHhccCCCcccccCHhHHHHH--HHHHHHHHHHHHHHh
Confidence 998642 111111221 12233445555432 2233333322111 11111111 1112211 122211
Q ss_pred -C----ChhHHHHHHH---HHHHHhcCChhhHHHHH------------hcCChHHHHHhhCCCCH--HHHHHHHHHHHHh
Q 007101 303 -C----CSESQREAAL---LLGQFAATDSDCKVHIV------------QRGAVRPLIEMLQSPDV--QLREMSAFALGRL 360 (618)
Q Consensus 303 -~----~~~~~~~a~~---~L~~l~~~~~~~~~~l~------------~~~~~~~L~~lL~~~~~--~v~~~a~~~L~~l 360 (618)
. +|++-+..+. +=..++.+....+..+. -.++++.+++++..+++ ..-..-..++-.|
T Consensus 1953 Qk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L 2032 (2235)
T KOG1789|consen 1953 QKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVEL 2032 (2235)
T ss_pred ccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHH
Confidence 0 1222111111 00001111111111111 23466777777765433 2222333344444
Q ss_pred hcC-CCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHH
Q 007101 361 AQD-MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 439 (618)
Q Consensus 361 ~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 439 (618)
.+. +.-..++-..|-+|.++..+...+..+-..|+..|..|+.+.-+...+.....+..++.+...-........++++
T Consensus 2033 ~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2033 VRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLMGLAAEALK 2112 (2235)
T ss_pred HHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHHHHHHHHHH
Confidence 443 3334566677889999999987777777899999999999988888888776666666554444444444444554
Q ss_pred HHHH---------HHhhhhHHHHHHHHhhC
Q 007101 440 RLEE---------KIHGRVLNHLLYLMRVA 460 (618)
Q Consensus 440 ~~~~---------~~~~~~l~~L~~ll~~~ 460 (618)
++.. ....++++-|+.+|...
T Consensus 2113 R~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2113 RLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 4433 23667788888888753
No 101
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.27 E-value=7.9e-06 Score=65.28 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=107.5
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (618)
.+..|+.-.....+. +.+++...-|.|.+. +|.+-..+.+...+..++..+..++..+...+.+.|+|+|.
T Consensus 17 Ylq~LV~efq~tt~~-------eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~- 87 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNI-------EAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL- 87 (173)
T ss_pred HHHHHHHHHHHhccH-------HHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-
Confidence 455566555554442 888999999999998 77778889999999999999999999999999999999997
Q ss_pred CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHH
Q 007101 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (618)
++.+.+.+.+.++++.++..+.++...+...++.++..++......+..+....++..+
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 78899999999999999999999999999999999999987766656666544344333
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.23 E-value=0.00039 Score=69.47 Aligned_cols=186 Identities=31% Similarity=0.378 Sum_probs=141.4
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007101 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
..++.+..++.+.+. .++..+...++.+-. ...++.+..++.+.++.+|..+..+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~--------~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~ 103 (335)
T COG1413 43 EAADELLKLLEDEDL--------LVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD 103 (335)
T ss_pred hhHHHHHHHHcCCCH--------HHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Confidence 357788888888744 778888877554432 2367899999999999999999998887753
Q ss_pred CCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCCh----------
Q 007101 237 KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS---------- 305 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~---------- 305 (618)
...++.++.++. +++..+|..+.++|+.+-.. . .+..++..+.+...
T Consensus 104 -----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~---------a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 104 -----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE--R---------ALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred -----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--h---------hhHHHHHHhccchhhhhhhhccch
Confidence 345788898888 69999999999999998322 1 36667777776542
Q ss_pred --hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhh
Q 007101 306 --ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 383 (618)
Q Consensus 306 --~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll 383 (618)
.++..+...++.+- +...++.+...+.+.+..+|..+..+|+.+.... ......+...+
T Consensus 162 ~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~ 222 (335)
T COG1413 162 LLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKAL 222 (335)
T ss_pred HHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHh
Confidence 34555555555552 2336788999999999999999999999998754 33456788889
Q ss_pred cCCChhHHHHHHHHHHHhh
Q 007101 384 DSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 384 ~~~~~~v~~~a~~~L~~l~ 402 (618)
.+.++.++..++.+|..+-
T Consensus 223 ~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 223 SDESLEVRKAALLALGEIG 241 (335)
T ss_pred cCCCHHHHHHHHHHhcccC
Confidence 9999999999999998875
No 103
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.5e-05 Score=76.96 Aligned_cols=260 Identities=15% Similarity=0.128 Sum_probs=176.5
Q ss_pred HHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHH
Q 007101 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (618)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 212 (618)
.+++.+|-.++ .-.-.|.-+.+..+...|+++|.++.. -+...+...++|+.-.-.+.+..+...|++..+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl 478 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------eeeccchhhhhheeeeccchHHHHHHhhHHHHH
Confidence 34444444555 333456777788899999999998654 334456778888887788888999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCccc-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh---HHHHHH
Q 007101 213 VELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN---IKKEVL 288 (618)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~ 288 (618)
+.++.+.|..+|....|+++++..+...+ +-.+...-++..++.+.+++.-.++..++..|.|++.++.. .+...+
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~ 558 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFI 558 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEE
Confidence 99999999999999999999998854443 33456667799999999999999999999999999764322 111111
Q ss_pred hcC----CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh-cCChHHHHHhh---------------------
Q 007101 289 AAG----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEML--------------------- 342 (618)
Q Consensus 289 ~~~----~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~~lL--------------------- 342 (618)
... +...|+..+...++-.....+.+|.+++..++..+..+.. ..++..+...|
T Consensus 559 K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p 638 (743)
T COG5369 559 KATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLP 638 (743)
T ss_pred ecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCc
Confidence 111 3445666666777766777788888888776665554443 33444433333
Q ss_pred --------------------------------CCCCHHHHHHHHHHHHHhhcCCC---------cchhhHhcCCHHH-HH
Q 007101 343 --------------------------------QSPDVQLREMSAFALGRLAQDMH---------NQAGIAHNGGLVP-LL 380 (618)
Q Consensus 343 --------------------------------~~~~~~v~~~a~~~L~~l~~~~~---------~~~~l~~~~~l~~-L~ 380 (618)
.+++.+.-.++.|.+.|+..... .+..+....|+.. +.
T Consensus 639 ~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~ 718 (743)
T COG5369 639 ISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLV 718 (743)
T ss_pred cceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHH
Confidence 01233455566677767543221 1223444444444 55
Q ss_pred HhhcCCChhHHHHHHHHHHHh
Q 007101 381 KLLDSKNGSLQHNAAFALYGL 401 (618)
Q Consensus 381 ~ll~~~~~~v~~~a~~~L~~l 401 (618)
.+..+.++.|++.+-.+|.++
T Consensus 719 k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 719 KIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHhccCcHHHHHHHHHHHHhh
Confidence 555666779999999998876
No 104
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.22 E-value=6.5e-07 Score=91.85 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred ChhhhhhHHHHHHHhhhhhccCC--cc-cCCCC---CCCcccchh-Hhhh--cCCCcccEEEEE-CCeEEehhHHHHhcC
Q 007101 502 NPKQQLDGAVALFKLANKATTLS--SV-DAAPP---SPTPQVYLG-DQFV--NNATLSDVTFLV-EGRRFYAHRICLLAS 571 (618)
Q Consensus 502 ~~~v~~~a~~~L~~L~~~~~~~~--~~-~~~~~---~~~~~~~l~-~~~~--~~~~~~Dv~~~~-~~~~~~~h~~il~~~ 571 (618)
|+.-|...|..|.++++...-.. +. +...+ ..+...+.. |.+. ...+..|+.+.+ +|+.++|||++|++|
T Consensus 654 N~~qrtrtCeMl~~~lekf~l~el~~~~~s~~~~~~~~n~ia~~~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aR 733 (1267)
T KOG0783|consen 654 NLSQRTRTCEMLANLLEKFHLAELLPFSVSRQPLLSLTNDIAQLYNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSAR 733 (1267)
T ss_pred ChhhcccHHHHHHHHHhhhhHHhhhhhhhhccchhhcccHHHHHhcCeeEecCCccceeEEEEecCCcCcccceeEeeeH
Confidence 44456777888888877654211 11 11111 112221111 2221 234555666666 667799999999999
Q ss_pred CHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHh-CCcc
Q 007101 572 SDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDE-FCAF 613 (618)
Q Consensus 572 s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Y-t~~~ 613 (618)
++||..||..-|.|++.-.+....++.+.|+.+|+|+| ++++
T Consensus 734 lEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~ 776 (1267)
T KOG0783|consen 734 LEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKV 776 (1267)
T ss_pred HHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchH
Confidence 99999999999999888666666677999999999999 5544
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=1.1e-05 Score=81.31 Aligned_cols=261 Identities=15% Similarity=0.144 Sum_probs=159.2
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc-----hhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 007101 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (618)
....++++++... +++..|+..++-...-.| .....-....+...+.+.+.+.+..+|..|+++|..
T Consensus 236 Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 236 YSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE 307 (823)
T ss_pred HHHHHHHhcchHH--------HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch
Confidence 4566677777766 788877555544333221 111111113456677788888888899999998887
Q ss_pred hhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC-----------ChhHHHHHHhcCCHHHHHHhhc
Q 007101 234 LAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHS-----------SPNIKKEVLAAGALQPVIGLLS 301 (618)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~-----------~~~~~~~~~~~~~l~~L~~ll~ 301 (618)
+-.-+++...+..+..++..+-..-. +..+.-.. .=+..+++ .......++..|+...++.-|.
T Consensus 308 ~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~----s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlE 383 (823)
T KOG2259|consen 308 FEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY----SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLE 383 (823)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH----hcCCcccCccccccCchhhccccccccccccccceeeeech
Confidence 76543444333333222221111000 11111100 00001110 1122345777888899999999
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHH
Q 007101 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 381 (618)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ 381 (618)
+.-.++|+.|...++.|+...|..... .+..|++++.+....||..|..+|..++.+-. ++..-++.++.
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~ 453 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLRQILE 453 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHH
Confidence 988999999999999999887776543 47899999999999999999999999987622 23445778888
Q ss_pred hhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHH
Q 007101 382 LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 441 (618)
Q Consensus 382 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 441 (618)
.|.+.+.++|++.-..|++.-....++-.+.-.+.+..|..--.+-..+..|+....+|.
T Consensus 454 ~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 454 SLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccC
Confidence 999999999998888888765444444444333333322221112234555665555444
No 106
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00015 Score=70.08 Aligned_cols=236 Identities=19% Similarity=0.205 Sum_probs=174.9
Q ss_pred HHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-----Ch----hHHHHHHhcCCHHHHHHh
Q 007101 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-----SP----NIKKEVLAAGALQPVIGL 299 (618)
Q Consensus 229 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~----~~~~~~~~~~~l~~L~~l 299 (618)
.-+..++. -|+....+++.++++.|+.+|.+.+.++....+..|..++.. +. .....+++.++++.|++-
T Consensus 106 Q~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqn 184 (536)
T KOG2734|consen 106 QEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQN 184 (536)
T ss_pred HHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHH
Confidence 34445554 688888999999999999999999999999999999998652 11 234567778899999988
Q ss_pred hcCCChhH------HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCC-cchhh
Q 007101 300 LSSCCSES------QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMH-NQAGI 370 (618)
Q Consensus 300 l~~~~~~~------~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~-~~~~l 370 (618)
+..-+..+ ...+...+-|+....+.......+.|.+..|+.-+.. +-.....+|...+.-+..+.. ++..+
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~ 264 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLL 264 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhh
Confidence 86544433 3456778889988888888888889999999886654 344566677888888777554 67777
Q ss_pred HhcCCHHHHHHhhc---CC------ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHH
Q 007101 371 AHNGGLVPLLKLLD---SK------NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 441 (618)
Q Consensus 371 ~~~~~l~~L~~ll~---~~------~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 441 (618)
..-.++..+++-+. .. ..+..++...+|+.+...+.++..+....+++
T Consensus 265 ~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq----------------------- 321 (536)
T KOG2734|consen 265 GPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ----------------------- 321 (536)
T ss_pred cCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-----------------------
Confidence 77889988887662 11 23567788888999889999999999887765
Q ss_pred HHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc---cccceecCCchHHHHHHhc
Q 007101 442 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLG 499 (618)
Q Consensus 442 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~L~~ll~ 499 (618)
+..++-......+..++.+|.+...+++ ++..+++..|+..+..++-
T Consensus 322 -----------Lm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 322 -----------LMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred -----------HHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 2333333355667778888888876665 5566677778877776653
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.21 E-value=0.00098 Score=66.58 Aligned_cols=214 Identities=33% Similarity=0.377 Sum_probs=161.1
Q ss_pred CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007101 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
..++.++.++.+.+. .++..++..++.+... ..++.+..++.+.+. .++.
T Consensus 43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~--------~vr~ 92 (335)
T COG1413 43 EAADELLKLLEDEDL------------LVRLSAAVALGELGSE----------EAVPLLRELLSDEDP--------RVRD 92 (335)
T ss_pred hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCH--------HHHH
Confidence 467888899988855 8999999887655522 247889999998876 8899
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC
Q 007101 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (618)
.++.+|+.+-. ...++.++.++. +.+..+|..+.++|..+-. ...+..++..+++..
T Consensus 93 ~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~ 150 (335)
T COG1413 93 AAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDED 150 (335)
T ss_pred HHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccch
Confidence 99998776553 235688888888 5889999999999998875 223677777777655
Q ss_pred H------------HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (618)
Q Consensus 263 ~------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~ 330 (618)
. .++..+...|+.+-. ...++.+...+.+....++..++.+|+.+....
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 2 355566666655521 125778899999998899999999999997443
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007101 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 399 (618)
Q Consensus 331 ~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 399 (618)
..+.+.+...+.+++..++..++.+++.+-.. ..+..+...+.+.++.++..+...+.
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 33568888899999999999999888877542 34667888888888877766666655
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.21 E-value=3.8e-05 Score=82.77 Aligned_cols=282 Identities=16% Similarity=0.034 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHhcc--ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc----CChhhHH
Q 007101 78 AAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQQ 151 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~----~~~~~~~ 151 (618)
..+..|+..|..++. +.+.+ =..++|.++.++.++.. +||..|+.+|..+. .-+..-.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCcccc
Confidence 357789999999887 33322 14569999999999988 99999999988776 2222233
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (618)
.+...-.+|.|-.++.+.+.. .++..-+.+|..|+..-. .+...+.-.....++++++.+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse--------- 561 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE--------- 561 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc---------
Confidence 344445677777787775332 455555667777775211 122222122222234444333
Q ss_pred HHhhcC-CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHH
Q 007101 232 RTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (618)
Q Consensus 232 ~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 310 (618)
..... .+.....+.. ++-+....++.++++-|++.-+..|.-||..... .--+.-+++.|+..|.+.++..|..
T Consensus 562 -t~~~~~~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~a 636 (1431)
T KOG1240|consen 562 -TAPEQNYNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGA 636 (1431)
T ss_pred -cccccccchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHH
Confidence 11110 1111222222 2334456778888888998888888888653211 1111226889999999999888765
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhH
Q 007101 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 390 (618)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 390 (618)
-...+..++. .....-++..++|.|.+-|.++++.|...|+.+|..|+...--++. .-...++....+|-+++.-+
T Consensus 637 FfdsI~gvsi---~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~-~v~~i~~~v~PlL~hPN~WI 712 (1431)
T KOG1240|consen 637 FFDSIVGVSI---FVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP-AVKDILQDVLPLLCHPNLWI 712 (1431)
T ss_pred HHhhccceEE---EEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH-HHHHHHHhhhhheeCchHHH
Confidence 5544444431 1112223456789999999999999999999999999975444332 22234556777888899999
Q ss_pred HHHHHHHHHHhhcC
Q 007101 391 QHNAAFALYGLADN 404 (618)
Q Consensus 391 ~~~a~~~L~~l~~~ 404 (618)
|..++.++..+++.
T Consensus 713 R~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 713 RRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 109
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0021 Score=66.24 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=166.9
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHH
Q 007101 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (618)
..+.++-+|.+. -+.++.+|+-.+..++- -|+..+ -++|.|+.=|.++++ .|+.+|
T Consensus 145 La~Dv~tLL~ss------kpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp------------~V~SAA 201 (877)
T KOG1059|consen 145 LADDVFTLLNSS------KPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDP------------SVVSAA 201 (877)
T ss_pred HHHHHHHHHhcC------chHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCc------------hHHHHH
Confidence 334455555554 44578888888887775 344332 247899999988887 899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007101 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
...+..|+ .+|.+.- ..-|.+.++|-+..+. =+....+..+++|+.-.|...+ ..+++|..+
T Consensus 202 V~VICELArKnPknyL-----~LAP~ffkllttSsNN-------WmLIKiiKLF~aLtplEPRLgK-----KLieplt~l 264 (877)
T KOG1059|consen 202 VSVICELARKNPQNYL-----QLAPLFYKLLVTSSNN-------WVLIKLLKLFAALTPLEPRLGK-----KLIEPITEL 264 (877)
T ss_pred HHHHHHHHhhCCcccc-----cccHHHHHHHhccCCC-------eehHHHHHHHhhccccCchhhh-----hhhhHHHHH
Confidence 99999999 8887643 3457888888877663 4555677788888876665544 356899999
Q ss_pred hcCCCH-HHHHHHHHHHH--HhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCC
Q 007101 216 LEFTDT-KVQRAAAGALR--TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (618)
Q Consensus 216 l~~~~~-~v~~~a~~~L~--~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 292 (618)
+.++.. .+...+..++. +++.+-++.-..+. -+++.|-.++.+.|+.+++-++-+++.+...++...+. .
T Consensus 265 i~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~ 337 (877)
T KOG1059|consen 265 MESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----H 337 (877)
T ss_pred HHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----h
Confidence 987653 33333333322 23322222222221 13666777788999999999999999998776654332 3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC
Q 007101 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~ 363 (618)
-..++.+|.+.+..+|..|+..|..+.+ .++... ++..|+..+.. .....|...+.-+..+|..
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 4578899999999999999999988863 333333 35666665544 3335666655555555543
No 110
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0021 Score=62.41 Aligned_cols=265 Identities=18% Similarity=0.155 Sum_probs=192.1
Q ss_pred HHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCCh----------hhHH
Q 007101 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP----------EHQQ 151 (618)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~----------~~~~ 151 (618)
..+.-+.-++.-|+.-..+++.++|+.|+.+|.+.+. +|-......|..|.+.. ..-+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt------------DI~iavvdLLqELTD~Dv~~es~egAevLid 170 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT------------DIAIAVVDLLQELTDEDVLYESEEGAEVLID 170 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc------------hhHHHHHHHHHHhhhhcccccccccHHHHHH
Confidence 3455666677778888899999999999999999998 88889999999998321 2356
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC--CCHHHHHHHHH
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAG 229 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~ 229 (618)
++++.++++.|++-+.+-+.+.... ..-...++..+-|+..-.+.....+++.|.+.-|+.-+.. +-..-...|..
T Consensus 171 aLvdg~vlaLLvqnveRLdEsvkee--a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasE 248 (536)
T KOG2734|consen 171 ALVDGQVLALLVQNVERLDESVKEE--ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASE 248 (536)
T ss_pred HHHhccHHHHHHHHHHHhhhcchhh--hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHH
Confidence 7788999999998887765422110 1445677888999998888888888888888777764433 33456678889
Q ss_pred HHHHhhcCCcccHHHHHhcCCHHHHHHhhc-----CC----CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh
Q 007101 230 ALRTLAFKNDENKNQIVECNALPTLILMLR-----SE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (618)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-----~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 300 (618)
+|.-+..++.+++......+++..+++-+. ++ +.+....-..+|+.+... +.++..++...++....-++
T Consensus 249 iLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lml 327 (536)
T KOG2734|consen 249 ILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLML 327 (536)
T ss_pred HHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHH
Confidence 999998877778888888889999887664 21 345667777777777555 56677888877887776666
Q ss_pred cCCChhHHHHHHHHHHHHhcCCh--hhHHHHHhcCChHHHHHhhC-C---------CCHHHHHHHHHHHHHhhc
Q 007101 301 SSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEMLQ-S---------PDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~--~~~~~l~~~~~~~~L~~lL~-~---------~~~~v~~~a~~~L~~l~~ 362 (618)
+. ....+..+..+|-....+++ +++..+++..++..+..+.. . .....-++.+..|+.+-.
T Consensus 328 r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 328 RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 65 34467778888888877665 56666777777776666432 2 223455666777776654
No 111
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=1.9e-05 Score=79.76 Aligned_cols=187 Identities=16% Similarity=0.141 Sum_probs=115.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-----hH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----NI 283 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~ 283 (618)
...+..+..+.|..|+..|+..|..|..+..-. .-.....++++.+.+..||..|+..++-+..-.+ +.
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccccc------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 344777888888889999988888887521111 1235667889999999999999777665533221 11
Q ss_pred HHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHH--h
Q 007101 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGR--L 360 (618)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~--l 360 (618)
.+.-....++..+...+.+.++.+|..|+.+|+.+-..+++.....++..++..+-..=. ...+. ....+ .
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk------~l~s~Gew 347 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK------ALYSSGEW 347 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH------HHHhcCCc
Confidence 111112336677888888999999999999999986555554444443333332211110 01111 11111 1
Q ss_pred hcC------------CCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcc
Q 007101 361 AQD------------MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (618)
Q Consensus 361 ~~~------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (618)
+.+ ++....++..|+-..++.-+.+.-.+||.+|...++.|+.+...
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~ 406 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG 406 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC
Confidence 111 11122356666667777777777889999999999999876443
No 112
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.10 E-value=0.00025 Score=76.72 Aligned_cols=300 Identities=15% Similarity=0.079 Sum_probs=183.0
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-
Q 007101 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK- 237 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~- 237 (618)
++.+...++.-... +.+..|+..|..++..-..- ..-..++|.++.++.++...||..|+.+|..+...
T Consensus 424 vs~lts~IR~lk~~-------~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTI-------QTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALV 493 (1431)
T ss_pred HHHHHHHHHhhhcc-------hhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 44555555544332 77888999998888633321 22245789999999999999999999998887642
Q ss_pred ---CcccHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHH
Q 007101 238 ---NDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (618)
Q Consensus 238 ---~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~ 313 (618)
.+.+...+.+. ++|.|-.++.+ ....+|..-+.+|..|+..-- .+...+.-.....++.+.+.+.
T Consensus 494 r~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset------ 562 (1431)
T KOG1240|consen 494 RDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET------ 562 (1431)
T ss_pred cCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc------
Confidence 23333344443 56777778877 556778777888888854311 1111111111222334433321
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHH
Q 007101 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393 (618)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 393 (618)
..+. .. +.....+ ...+-+.+..+|.++++-|+..-+..|.-||....-. -.+.-.+..|+..|+++++.+|.+
T Consensus 563 -~~~~-~~-~~~~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~a 636 (1431)
T KOG1240|consen 563 -APEQ-NY-NTELQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGA 636 (1431)
T ss_pred -cccc-cc-chHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHH
Confidence 0000 01 1111111 1234456667888888899999888888888532111 011224677999999999999988
Q ss_pred HHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHH
Q 007101 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 473 (618)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 473 (618)
-...+..++..-..+ -.+..++|-|.+-|.++.+.|-..|+.+|.
T Consensus 637 FfdsI~gvsi~VG~r-----------------------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls 681 (1431)
T KOG1240|consen 637 FFDSIVGVSIFVGWR-----------------------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLS 681 (1431)
T ss_pred HHhhccceEEEEeee-----------------------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHH
Confidence 777777665322111 012235666777777888888888888888
Q ss_pred hhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 474 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 474 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
-|+...--++. .-...++....++-++|--+|.+++..+...++...
T Consensus 682 ~Lik~~ll~K~-~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 682 ILIKLGLLRKP-AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHhcccchH-HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 88765543322 112345555566778888888888888888776543
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.09 E-value=0.0018 Score=66.60 Aligned_cols=290 Identities=20% Similarity=0.175 Sum_probs=168.0
Q ss_pred HHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHH
Q 007101 227 AAGALRTLAFKNDENKNQIVECNALPTLILML----------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (618)
Q Consensus 227 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (618)
|+.+|.-+++ ++.+.+.+....++..|+++- ...+..+..+|++||+|+...++..++.+.+.|..+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3566777776 566666666666777777765 25678999999999999999999999999999999999
Q ss_pred HHhhcCC-----ChhHHHHHHHHHHHHhcCChhhHHHHHh-cCChHHHHHhhCC-----------------CCHHHHHHH
Q 007101 297 IGLLSSC-----CSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS-----------------PDVQLREMS 353 (618)
Q Consensus 297 ~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~~lL~~-----------------~~~~v~~~a 353 (618)
+..+... ++++.-...++|.-++......+..+.+ .+++..+...|.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 6777777888887777777777766665 4677777665521 144566788
Q ss_pred HHHHHHhhcCCCcchhhHhcCCHHHHHHhhc-------C--CChhHHHHHHHHHHHhhcCCcchhHHHhhc----ccccc
Q 007101 354 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-------S--KNGSLQHNAAFALYGLADNEDNVADFIRVG----GVQKL 420 (618)
Q Consensus 354 ~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-------~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~----~~~~L 420 (618)
+..+.|+..+......-.....++.++.++. . +-......++.+|.|+-. .+...++... .+..-
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl--~~~~~l~~~~~~~~~~~~~ 237 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL--ECLDSLLSPKFQQSSLFPE 237 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh--HHHhhhhcccCCcccccCC
Confidence 8899999875444322112223333333321 1 223466777888888731 1111111110 00000
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCC--ccccceec-CCchHHHHHH
Q 007101 421 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFID-GGGLELLLGL 497 (618)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~-~~~l~~L~~l 497 (618)
......+..+...+...+.+....-....+.+++.+|..-...- ..+-..+....-.+ +....+-+ ...-..|+++
T Consensus 238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 00011111111111112211110001234555555555421110 22222333222111 22222222 3345699999
Q ss_pred hcCCChhhhhhHHHHHHHhhhhh
Q 007101 498 LGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+.+..+.+|..++..|..|+...
T Consensus 317 mt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHhhh
Confidence 99988999999999999998753
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.05 E-value=2.7e-05 Score=72.93 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=118.4
Q ss_pred cCCChhHHHHHHHHHHHHhcCC--hhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCH
Q 007101 301 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (618)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~l~~--~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l 376 (618)
.+.+|+.+..++.-|..+..+. ......+.. ..++..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999887655 222222221 256677888888888889999999999998754443333344568
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007101 377 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 456 (618)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l 456 (618)
+.|++.+.++...++..|..+|..+.........+ +.+.+...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------------------------------------~~~~l~~~ 139 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------------------------------------LLEILSQG 139 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------------------------------------HHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------------------------------------HHHHHHHH
Confidence 88999999999999999999999998665411111 14456667
Q ss_pred HhhCCHhHHHHHHHHHHhhcCCCc-cccceec----CCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 457 MRVAEKGVQRRVALALAHLCSPDD-QRTIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 457 l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
+.+.++.+|..++..+..+..... ....+.. ...++.+...+.+++++||..|-.++..+....+
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 788899999999999999865444 2222222 3467888899999999999999999999987754
No 115
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.02 E-value=0.0005 Score=70.59 Aligned_cols=275 Identities=18% Similarity=0.196 Sum_probs=175.9
Q ss_pred HHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHH
Q 007101 84 THVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHL 162 (618)
Q Consensus 84 ~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L 162 (618)
+.+|.-+++++.....+....++..|+.+-.-... ........++.+...|+++|.|+. .++..|..+.+.|..+.+
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~--~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSES--DEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCccc--ccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 55677777888787878777777777775521110 001112234589999999999999 999999999999999999
Q ss_pred HHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhc-CChHHHHHhhcC-----------------CCHHHH
Q 007101 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-----------------TDTKVQ 224 (618)
Q Consensus 163 ~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~L~~ll~~-----------------~~~~v~ 224 (618)
+..|+........ .++.....++|.-++...+..+..+++. +++..+...+.. .+....
T Consensus 80 ~~~Lk~~~~~~~~---~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 80 CERLKNYSDSSQP---SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHcccccCCC---hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 9999998432111 1788888999988887777777666654 677777665531 134566
Q ss_pred HHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChhH-------HHHH-
Q 007101 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLR---------SEDSAIHYEAVGVIGNLVHSSPNI-------KKEV- 287 (618)
Q Consensus 225 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~- 287 (618)
..+++.+.|+..+.+.... -...+.++.++.++. .+......+++.+|.|+-...... ....
T Consensus 157 ~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~ 235 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLF 235 (446)
T ss_pred HHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCccccc
Confidence 7789999999875444432 011223344433322 223467888888888872111110 0000
Q ss_pred ---HhcCCHHHHHHhhcCC--------ChhHHHHHHHHHHHHhcCChhhHHHHHh----------------cCChHHHHH
Q 007101 288 ---LAAGALQPVIGLLSSC--------CSESQREAALLLGQFAATDSDCKVHIVQ----------------RGAVRPLIE 340 (618)
Q Consensus 288 ---~~~~~l~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~~~~L~~ 340 (618)
.....+..|+.+|... -.+.....+.+|.+++..+...++.+.. ..+-..|+.
T Consensus 236 ~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlr 315 (446)
T PF10165_consen 236 PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLR 315 (446)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHH
Confidence 0112455566665421 1134455667788887665555544432 235567888
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCC
Q 007101 341 MLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 341 lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
++.++.+.++..+...|+.||..+
T Consensus 316 Lmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 316 LMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HhCCCCchHHHHHHHHHHHHHhhh
Confidence 888888999999999999998644
No 116
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=3.5e-05 Score=76.02 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC
Q 007101 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (618)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~ 345 (618)
..+++.+|..++.+-.-.+.-+....+.+.|+++|++++..+...+...++|+.-.-...+..+++.+++..++.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34455566666666555666677788899999999998777777788888898766677788899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcc--hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhccccccccc
Q 007101 346 DVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 423 (618)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~ 423 (618)
|..+|.+..|.+.++..+..+. -++...-++..++.+.+++.+.+++.++..|.|+..+...-+.. ...+...
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEks-----kdv~~K~ 560 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKS-----KDVFIKA 560 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccccccc-----ceeEEec
Confidence 9999999999999998866543 45677788999999999999999999999999997643221111 1111100
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007101 424 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
. + ..-+...++.-+...+|-.-...+..|.+++..++
T Consensus 561 ~----p----------------~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~ 597 (743)
T COG5369 561 T----P----------------RRYLFKRLIDKYEENNPMEILEGCYILVRNAACDD 597 (743)
T ss_pred C----h----------------HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccc
Confidence 0 0 11256778888888888777778999888875554
No 117
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.01 E-value=5e-05 Score=76.10 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=167.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhH--HHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
+..++.+|++..+.+|..|+...+.|+.--..+ .+.+...| ..|.+-|....+++.-..+.++..+.+...-....
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 566778888999999999998888774321111 12222222 23566677778888777777777775321111001
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhc-CCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcc
Q 007101 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (618)
Q Consensus 329 l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (618)
---.|++|.|..+|++.+..++.+....++.+|...+......+= .+--.|+.+|.+.+.++|.+|..+++.++..-.-
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 112578999999999999999999999999999765432111100 1122378888999999999999999999854222
Q ss_pred hhHHHhhcccccccccch-hhhhHHHHHHHHHHHHHHH-HhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccce
Q 007101 408 VADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF 485 (618)
Q Consensus 408 ~~~l~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 485 (618)
. +++..|++... +....+.|-+-.+.-..+. ..-.++|.|..=-..++..+|..++.+++.+-..-.+...=
T Consensus 764 q------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~d 837 (975)
T COG5181 764 Q------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLD 837 (975)
T ss_pred H------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1 12222333222 1122233322222211111 13457777777777789999999999999875433222111
Q ss_pred ecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhcc
Q 007101 486 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (618)
Q Consensus 486 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 522 (618)
+-....|.|-..+.+.++--|..|...+.+|+-+..+
T Consensus 838 Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 838 YVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 1234578888888899999999999999999887443
No 118
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.01 Score=59.69 Aligned_cols=351 Identities=13% Similarity=0.106 Sum_probs=194.2
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHH
Q 007101 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (618)
+...|+.|+..|..+-++... +.-.|++++..+.. ... ........++...+. .+++.+..+
T Consensus 203 ~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~s-mkn-------q~a~V~lvr~~~~ll~~n~q~~~q~- 265 (898)
T COG5240 203 NPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNAS-MKN-------QLAGVLLVRATVELLKENSQALLQL- 265 (898)
T ss_pred ChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccc-ccc-------chhheehHHHHHHHHHhChHHHHHH-
Confidence 445677888777776664322 12344555544331 000 011112333444444 444443332
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007101 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 234 (618)
.|.|-.-|++... -+...+++.+..++..+.. ..+. ...+..|-.+|.++....|-.|+++|..+
T Consensus 266 ----rpfL~~wls~k~e--------mV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~l 330 (898)
T COG5240 266 ----RPFLNSWLSDKFE--------MVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQL 330 (898)
T ss_pred ----HHHHHHHhcCcch--------hhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 2333344444333 5566677888777765522 2222 23567888889999999999999999999
Q ss_pred hcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007101 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (618)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~ 314 (618)
+...|... ..++ +.+-.+..+.+..+...|+..|..- +.++....++. .++.++.=++++-..+...|.+.
T Consensus 331 am~~P~kv-~vcN----~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rs 401 (898)
T COG5240 331 AMKYPQKV-SVCN----KEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRS 401 (898)
T ss_pred HhhCCcee-eecC----hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHH
Confidence 98655432 1121 2344555677766766666665543 33433333332 24444444444433344455555
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHH
Q 007101 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393 (618)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 393 (618)
|+... |..... .+..|...|. .+..+.+..+..++..+..+.+... ..+++.|...+.+.. .-+.
T Consensus 402 Lsl~F---p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk----EraLe~LC~fIEDce--y~~I 467 (898)
T COG5240 402 LSLLF---PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSK----ERALEVLCTFIEDCE--YHQI 467 (898)
T ss_pred HHhhC---cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHH----HHHHHHHHHHHhhcc--hhHH
Confidence 55553 333322 3455555443 4677788888888887776543321 223555666665432 2233
Q ss_pred HHHHHHHhhcC-CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHH
Q 007101 394 AAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (618)
Q Consensus 394 a~~~L~~l~~~-~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 472 (618)
+..+|.-|-+. +... ..+..+.++.+-+--.+.-+|..|+.+|
T Consensus 468 ~vrIL~iLG~EgP~a~------------------------------------~P~~yvrhIyNR~iLEN~ivRsaAv~aL 511 (898)
T COG5240 468 TVRILGILGREGPRAK------------------------------------TPGKYVRHIYNRLILENNIVRSAAVQAL 511 (898)
T ss_pred HHHHHHHhcccCCCCC------------------------------------CcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444322 1110 0112233344444445677899999999
Q ss_pred HhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 473 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 473 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
..++-..+.... .......|-+.+++.+.++|..|..+|.+|-..
T Consensus 512 skf~ln~~d~~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 512 SKFALNISDVVS--PQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHhccCcccccc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 998765554332 444667788899999999999999999988744
No 119
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0046 Score=64.43 Aligned_cols=302 Identities=17% Similarity=0.162 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
.+|..|+++|..+- -.+ +.|.++-..+....+.. +-+|..|+.+|-.|-.-+++.+..+ +.
T Consensus 123 LiRasALRvlSsIR------vp~----IaPI~llAIk~~~~D~s----~yVRk~AA~AIpKLYsLd~e~k~qL-----~e 183 (968)
T KOG1060|consen 123 LIRASALRVLSSIR------VPM----IAPIMLLAIKKAVTDPS----PYVRKTAAHAIPKLYSLDPEQKDQL-----EE 183 (968)
T ss_pred HHHHHHHHHHHhcc------hhh----HHHHHHHHHHHHhcCCc----HHHHHHHHHhhHHHhcCChhhHHHH-----HH
Confidence 78888888775443 111 13444444444332221 2789999999999988777766544 35
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhHHHHH
Q 007101 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEV 287 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~ 287 (618)
.+-.+|.+.++-|.-.|..++-.+| ++..+.+.. -...+++++.+-++=-+...+..|...++. .+......
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evC---PerldLIHk--nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~ 258 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIHK--NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSS 258 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhhH--HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccc
Confidence 6777888888989888888888887 444444433 367777777665544444555555544432 11000000
Q ss_pred H----------------------hcC---CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 007101 288 L----------------------AAG---ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (618)
Q Consensus 288 ~----------------------~~~---~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL 342 (618)
. +.+ ++...-.+|.+.++.+.-.++.+...++. .... ..++..|+.+|
T Consensus 259 ~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP---~~~~----~~i~kaLvrLL 331 (968)
T KOG1060|consen 259 LEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP---KNQV----TKIAKALVRLL 331 (968)
T ss_pred cccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC---HHHH----HHHHHHHHHHH
Confidence 0 000 23344456677788888899999999973 3222 23578888888
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHH-hh-cC-CChhHHHHHHHHHHHhhcCCcchhHHHhhccccc
Q 007101 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LL-DS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 419 (618)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~-ll-~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~ 419 (618)
.++ ..++...+..+..++... . +...+-++ .. .+ ....+...=+.+|.+|+....-...+.+.. .
T Consensus 332 rs~-~~vqyvvL~nIa~~s~~~---~-----~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q---~ 399 (968)
T KOG1060|consen 332 RSN-REVQYVVLQNIATISIKR---P-----TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ---T 399 (968)
T ss_pred hcC-CcchhhhHHHHHHHHhcc---h-----hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH---H
Confidence 763 355556555555554321 1 12222222 21 22 334455566667777764332222222211 1
Q ss_pred ccc-cchh-----hhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007101 420 LQD-GEFI-----VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 420 L~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
++. ..+. ++.+..|.. ....+...++..|+.++++.+..|..+++..+..|.....
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~-----~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCAS-----RIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHH-----hhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 111 1111 111112211 1112466788889999988888888888888888765444
No 120
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.98 E-value=9.2e-06 Score=52.27 Aligned_cols=40 Identities=45% Similarity=0.667 Sum_probs=36.7
Q ss_pred ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc
Q 007101 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (618)
Q Consensus 93 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~ 144 (618)
++++++.+++.|++|.|+++|++.+. ++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~------------~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDP------------EVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSH------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCH------------HHHHHHHHHHHHHh
Confidence 46788999999999999999997776 99999999999987
No 121
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0037 Score=69.82 Aligned_cols=297 Identities=14% Similarity=0.100 Sum_probs=169.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhH--HH
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KK 285 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~ 285 (618)
.||.|.++=-+++..|+..-..+-..|..+.....+...+ .+++-|+.-+.+....||+.+|-+|..|..+.+.. .+
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 4566666666788888876665555555433333333333 46777888888889999999999999998875532 11
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHH---HHHHHHHHhc----CCh-hhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHH
Q 007101 286 EVLAAGALQPVIGLLSSCCSESQRE---AALLLGQFAA----TDS-DCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFA 356 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~---a~~~L~~l~~----~~~-~~~~~l~~~~~~~~L~~-lL~~~~~~v~~~a~~~ 356 (618)
.+ ..+...+...+.+-...+|+. ++.+|+.++. ... .....+. ..++|.|++ -..+.-+++|..+..+
T Consensus 1078 ~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1078 KL--PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHHHHHH
Confidence 11 123444555555545556654 4445555541 111 1112221 335666655 1226678999999999
Q ss_pred HHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHH-HHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHH
Q 007101 357 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH-NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 435 (618)
Q Consensus 357 L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~ 435 (618)
+..|+.+....-.-.-...++.|++....-.+.+.- .++.+ .|...+ .......++ . ...+..+.+.
T Consensus 1155 l~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~e--alDt~R~s~-a--------ksspmmeTi~ 1222 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETE--ALDTLRASA-A--------KSSPMMETIN 1222 (1702)
T ss_pred HHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHH--HHHHHHHhh-h--------cCCcHHHHHH
Confidence 999987654322222234466677777665554432 23333 222110 000000000 0 0001112222
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhC-CHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHH
Q 007101 436 KTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 514 (618)
Q Consensus 436 ~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 514 (618)
..++.+-.-.-.+++|++.++++.+ .-..+..++..+..|+..-...........+..++..+++.++.++..-+.|..
T Consensus 1223 ~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1223 KCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMG 1302 (1702)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHH
Confidence 2333333334567889999999987 455666666666666532221122223446778888888999999999999999
Q ss_pred Hhhhhh
Q 007101 515 KLANKA 520 (618)
Q Consensus 515 ~L~~~~ 520 (618)
.|++..
T Consensus 1303 ~L~k~S 1308 (1702)
T KOG0915|consen 1303 YLAKFS 1308 (1702)
T ss_pred HHHhcC
Confidence 988863
No 122
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.94 E-value=1.4e-05 Score=51.40 Aligned_cols=41 Identities=39% Similarity=0.621 Sum_probs=37.8
Q ss_pred CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007101 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
++++++.+++.|+++.|+++|++++++++..|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36778899999999999999999999999999999999963
No 123
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00065 Score=70.68 Aligned_cols=349 Identities=14% Similarity=0.099 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
.=+..+-++++.+....+. .+..+.+++.....+- ++++.+---+.|.+...|... .+++.
T Consensus 29 kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl--------elKKlvyLYl~nYa~~~P~~a-----~~avn 89 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL--------ELKKLVYLYLMNYAKGKPDLA-----ILAVN 89 (734)
T ss_pred hHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCc--------hHHHHHHHHHHHhhccCchHH-----Hhhhh
Confidence 3445566677777744333 2346777777777665 777877777888887666432 34677
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhc
Q 007101 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (618)
.++.=.+++++.+|..|++.+..+-. +.. .+ -+...+.+.+++.++.+|..++-++.++-..+. +.....
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~v--~~i----~e-y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~ 159 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLRV--DKI----TE-YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDS 159 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEee--hHH----HH-HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhcccc
Confidence 88888888999999888877765543 222 22 246678999999999999999999999844433 556678
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhh
Q 007101 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 370 (618)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l 370 (618)
|+++.|..++.+.++.+...|..+|..+...+++..........+..++..+..-+.--+. ..|..++....... .
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y~p~d~-~ 235 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEYVPKDS-R 235 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhcCCCCc-h
Confidence 9999999999999999999999999999866544222222222334444444333333333 34444444332222 1
Q ss_pred HhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHh--hh
Q 007101 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH--GR 448 (618)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 448 (618)
-....+..+...+.+.++.+...+...+.++...........-...-+++..+........-. .++++...+. ..
T Consensus 236 ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyv---aLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 236 EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYV---ALRNINLILQKRPE 312 (734)
T ss_pred hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHH---HHhhHHHHHHhChH
Confidence 112345567777788888888888888888875544444444444444544433222211111 1222222111 11
Q ss_pred hHHHHHHHH--hhCC-HhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhhc
Q 007101 449 VLNHLLYLM--RVAE-KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 449 ~l~~L~~ll--~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
++..-+..+ +-.+ ..++..=+.++..++......+ .+.-|...-..-+.+....+.+++.+++....
T Consensus 313 ~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e 382 (734)
T KOG1061|consen 313 ILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE 382 (734)
T ss_pred HHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh
Confidence 111111111 1122 3566677777777776555333 34555555556777788889999999887643
No 124
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.82 E-value=0.00041 Score=64.98 Aligned_cols=182 Identities=20% Similarity=0.166 Sum_probs=117.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC--cccHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCC
Q 007101 217 EFTDTKVQRAAAGALRTLAFKN--DENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (618)
Q Consensus 217 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 292 (618)
.+.+++.|..++.-|..+..++ ......+.+ ..++..+...+.+....+...|+.++..++......-... -..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678999999999999998755 233333332 1455677777878888899999999999976533322222 3347
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-cchhhH
Q 007101 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIA 371 (618)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~ 371 (618)
++.|+..+.+...-++..|..+|..++...+.... + .++.+...+.+.++.+|..++..+..+..... ....+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 88999999998888899999999999865441111 1 15667778889999999999999999876443 222222
Q ss_pred h----cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007101 372 H----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 372 ~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
. ...++.+..++.+.+++||..|-.++..+...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 34566788899999999999999999998643
No 125
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.048 Score=56.50 Aligned_cols=306 Identities=18% Similarity=0.185 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChh-hHHHHHh
Q 007101 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQLIVD 155 (618)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-~~~~~~~ 155 (618)
++..|+-+|..+.+ +|+.. -..+....++.+|.+.+. .|...+...+.-|+ .+|+ ++..+-
T Consensus 164 vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~~~------------gv~ta~~sLi~~lvk~~p~~yk~~~~- 227 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQHM------------GVVTAATSLIEALVKKNPESYKTCLP- 227 (938)
T ss_pred HHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCcccc------------ceeeehHHHHHHHHHcCCHHHhhhHH-
Confidence 56666666666665 45432 224566777888877776 56667777777777 4443 222111
Q ss_pred CCcHHHHHHHHhhccCC-----CCcccchHHHHHHHHHHHHhhh-cCchhhHHHHhcCChHHHHHhhcC----CC---HH
Q 007101 156 NGALSHLVNLLKRHMDS-----NCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEF----TD---TK 222 (618)
Q Consensus 156 ~g~l~~L~~lL~~~~~~-----~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~~i~~L~~ll~~----~~---~~ 222 (618)
-.+..|..+......+ ...-|.+=+....++.|.+.-. +++..+..+. .++..++...+. .+ ..
T Consensus 228 -~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 228 -LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred -HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhh
Confidence 0122222222222111 0011222344556666665532 2223333332 234444444432 11 12
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc-
Q 007101 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS- 301 (618)
Q Consensus 223 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~- 301 (618)
.+-..+.-..+++.+-+...+.+.+ ++..|-+++.+.+..+|+-|+..+..|+.+... ...+... ...++..|.
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkt 379 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKT 379 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhcc
Confidence 3333344444555544444444443 478888899999999999999999999876333 2333333 677888888
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchh------------
Q 007101 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG------------ 369 (618)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~------------ 369 (618)
..+..+++.++..|..+|. ..+... ++..+++.|.+.++.+|+....-+.-|+..-...-.
T Consensus 380 erDvSirrravDLLY~mcD--~~Nak~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiri 452 (938)
T KOG1077|consen 380 ERDVSIRRRAVDLLYAMCD--VSNAKQ-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRI 452 (938)
T ss_pred ccchHHHHHHHHHHHHHhc--hhhHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 6688899999999999973 333333 367788888888999988876666666642211111
Q ss_pred ---hHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcc
Q 007101 370 ---IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (618)
Q Consensus 370 ---l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 416 (618)
.+..++...+++..- .+++++..|+..+......+...+.+++.|+
T Consensus 453 agd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 453 AGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred hcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 111122222333332 3678899999988888777777788888765
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.028 Score=56.71 Aligned_cols=304 Identities=18% Similarity=0.132 Sum_probs=179.0
Q ss_pred HHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CC--hhhHHHHHhCC
Q 007101 82 RATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK--PEHQQLIVDNG 157 (618)
Q Consensus 82 ~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~--~~~~~~~~~~g 157 (618)
..+++...+.. +++.+..+ .|.|-..|.+... .|...+++++..++ .+ ++.-+ .
T Consensus 246 ~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~e------------mV~lE~Ar~v~~~~~~nv~~~~~~-----~ 303 (898)
T COG5240 246 LLVRATVELLKENSQALLQL-----RPFLNSWLSDKFE------------MVFLEAARAVCALSEENVGSQFVD-----Q 303 (898)
T ss_pred ehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcch------------hhhHHHHHHHHHHHHhccCHHHHH-----H
Confidence 33444555544 55554444 4566666666555 88999999999888 33 23222 2
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (618)
.+..|-.+|+.... ..+..|+++|..|+...|..- .-+-+-+-.++.+.+..+...|...|..--
T Consensus 304 ~vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd~Nr~IstyAITtLLKTG-- 368 (898)
T COG5240 304 TVSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISDENRTISTYAITTLLKTG-- 368 (898)
T ss_pred HHHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhcccccchHHHHHHHHHcC--
Confidence 36677777777765 788999999999998666321 123355666777777777776666655433
Q ss_pred CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh-cCCChhHHHHHHHHHH
Q 007101 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLG 316 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~ 316 (618)
+++..+.++.. ++.++.=+.++-.-+...|++.|+.+ .+..+.. .+..|...| +.+..+.++.+..++.
T Consensus 369 t~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~---Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdais 438 (898)
T COG5240 369 TEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLL---FPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAIS 438 (898)
T ss_pred chhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhh---CcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHH
Confidence 46666655543 44444444444444444444444444 4443322 234454444 3445677888888888
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHH
Q 007101 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (618)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (618)
.+....|+.+.. .+..|+..+.+.. ++ -+...|+-|....+.... -...+..+.+-+--.+.-+|.+|.
T Consensus 439 d~~~~~p~skEr-----aLe~LC~fIEDcey~~---I~vrIL~iLG~EgP~a~~--P~~yvrhIyNR~iLEN~ivRsaAv 508 (898)
T COG5240 439 DAMENDPDSKER-----ALEVLCTFIEDCEYHQ---ITVRILGILGREGPRAKT--PGKYVRHIYNRLILENNIVRSAAV 508 (898)
T ss_pred HHHhhCchHHHH-----HHHHHHHHHhhcchhH---HHHHHHHHhcccCCCCCC--cchHHHHHHHHHHHhhhHHHHHHH
Confidence 887666665543 3566777776532 33 344455555442211100 001133344333335777889999
Q ss_pred HHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhh
Q 007101 396 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (618)
Q Consensus 396 ~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (618)
.+|..++.+...... ...+...|-.++++.+.++|..|..+|.++
T Consensus 509 ~aLskf~ln~~d~~~-----------------------------------~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 509 QALSKFALNISDVVS-----------------------------------PQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHhccCcccccc-----------------------------------HHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 999888766443110 112344566778888899999999988887
Q ss_pred cC
Q 007101 476 CS 477 (618)
Q Consensus 476 ~~ 477 (618)
-.
T Consensus 554 ~~ 555 (898)
T COG5240 554 RL 555 (898)
T ss_pred hh
Confidence 53
No 127
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.064 Score=58.44 Aligned_cols=258 Identities=17% Similarity=0.174 Sum_probs=158.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhcCChhhHH
Q 007101 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV 327 (618)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~ 327 (618)
++++.|+..+++.+..|+-.|+..++.++...|-. + ...++...+.++.-.+ +.....++.+|+.++...--.-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---L-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---H-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 56778888889999999999999999998776621 2 2235566666555443 56677899999999843211111
Q ss_pred HHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCCcc--hhhHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 007101 328 HIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 397 (618)
Q Consensus 328 ~l~~~~~~~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 397 (618)
.+ ..++|.++.-|.- ....||.+||.++|.+++..... ..+...=.-..|...+-+.+-.+|++|..+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 11 2356666665542 34579999999999999854332 112221112224455677788899999888
Q ss_pred HHHhhcCCcchhHHHhhccccccccc-chhhhhHHHHHHHHHHHHHH--HHhhhhHHHHHHH-HhhCCHhHHHHHHHHHH
Q 007101 398 LYGLADNEDNVADFIRVGGVQKLQDG-EFIVQATKDCVAKTLKRLEE--KIHGRVLNHLLYL-MRVAEKGVQRRVALALA 473 (618)
Q Consensus 398 L~~l~~~~~~~~~l~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~ 473 (618)
+-....-..|. ..|++.+... .+.+.....|..+....+.. .+...++.+++.. +.+-+..+|..++++|.
T Consensus 495 lqE~VGR~~n~-----p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 495 LQENVGRQGNF-----PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHhccCCCC-----CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 87765333321 1223332222 22223333444443333322 2345566666655 55669999999999999
Q ss_pred hhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 474 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 474 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+|+..... ....+.++.|+....+++...|.-+..+...+....
T Consensus 570 ~Ls~~~pk---~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 570 KLSLTEPK---YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHHHhhHH---hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 98643321 123457889998888888888876655555555443
No 128
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0099 Score=61.26 Aligned_cols=285 Identities=16% Similarity=0.198 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 257 (618)
.....|+.+++|+-. .+.+..+. .-+-.+|.+++ +-++..++-+|..|-..+|+.. -..+..+.++.+
T Consensus 126 ~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~L 195 (938)
T KOG1077|consen 126 TFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHL 195 (938)
T ss_pred HHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHH
Confidence 677788888888765 22222222 33346666644 5788888888888887555442 223567889999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC-------------CChhHHHHHHHHHHHHhcC-Ch
Q 007101 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-------------CCSESQREAALLLGQFAAT-DS 323 (618)
Q Consensus 258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-------------~~~~~~~~a~~~L~~l~~~-~~ 323 (618)
|.+.+-.|...+...+..++..+++.-...+. -.+..|...... +.+=.+...+++|.++-.. ++
T Consensus 196 L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~ 274 (938)
T KOG1077|consen 196 LDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP 274 (938)
T ss_pred hCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc
Confidence 99988888888888888888776653221110 012222222211 1233556677777776321 12
Q ss_pred hhHHHHHhcCChHHHHHhhCCC-------CHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHH
Q 007101 324 DCKVHIVQRGAVRPLIEMLQSP-------DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 396 (618)
Q Consensus 324 ~~~~~l~~~~~~~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 396 (618)
..+..+ ..+++.++...+.+ +..++-+.+.-..+|+.+-+....+. ...+..|-+++.+....+|..++.
T Consensus 275 ~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll-~~~~~~Lg~fls~rE~NiRYLaLE 351 (938)
T KOG1077|consen 275 STRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL-SRAVNQLGQFLSHRETNIRYLALE 351 (938)
T ss_pred hHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHhhcccccchhhhHH
Confidence 222222 23455555555421 11222233333445554333332222 234666788888888899999999
Q ss_pred HHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHh-hCCHhHHHHHHHHHHhh
Q 007101 397 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHL 475 (618)
Q Consensus 397 ~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l 475 (618)
.++.|+........+..+ ...++..|+ ..|..++..|+..|..+
T Consensus 352 sm~~L~ss~~s~davK~h-----------------------------------~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 352 SMCKLASSEFSIDAVKKH-----------------------------------QDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHHHHhccchHHHHHHH-----------------------------------HHHHHHHhccccchHHHHHHHHHHHHH
Confidence 999988765443333221 344677788 66899999999999999
Q ss_pred cCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 476 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
|..++.+.+ +.-|++.+.+-++.+|++-+--++=|+.+
T Consensus 397 cD~~Nak~I------V~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 397 CDVSNAKQI------VAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred hchhhHHHH------HHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 987776654 77888999999999998887777777765
No 129
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.72 E-value=0.0055 Score=62.85 Aligned_cols=363 Identities=19% Similarity=0.164 Sum_probs=197.7
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHH
Q 007101 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (618)
+|.|+..|.+.+... ..-.+.++.+|..+|.++..-+.+.. ..+..+-...+.... .+....+
T Consensus 1 ~p~ll~~Lpd~~~~~---------~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-------~~~~~~i 63 (415)
T PF12460_consen 1 LPALLALLPDSDSST---------DSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-------SDYCHAI 63 (415)
T ss_pred CchHHhhCCCCCCcc---------hhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-------hHHHHHH
Confidence 366777776655421 04567899999999977776555543 334444444433322 1666777
Q ss_pred HHHHHHhhhcCchhh-----HHHHhcCChHHHHHhhcC-----C--CHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCCHH
Q 007101 186 ADAITNLAHENSSIK-----TRVRMEGGIPPLVELLEF-----T--DTKVQRAAAGALRTLAFKND-ENKNQIVECNALP 252 (618)
Q Consensus 186 ~~~L~~L~~~~~~~~-----~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~ 252 (618)
+.+|.++........ ....+...++.+.+..-. . ++.+...+...+..+...-+ +.++.+.+ .+..
T Consensus 64 l~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-~~~~ 142 (415)
T PF12460_consen 64 LSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-ELYS 142 (415)
T ss_pred HHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHH
Confidence 788877765443322 223333466777666532 1 24566666666666655322 33333332 1222
Q ss_pred HHHH-----hhc-CC------CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHh
Q 007101 253 TLIL-----MLR-SE------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFA 319 (618)
Q Consensus 253 ~L~~-----ll~-~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~ 319 (618)
.+.. -+. .. ......-...++..+ .++..-. -....+..++.+..+. ++..+..++.+++.+.
T Consensus 143 lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l---~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv 218 (415)
T PF12460_consen 143 LFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSL---RKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLV 218 (415)
T ss_pred HHccccccCCCCccccccccccccHHHHHHHHHHcC---CcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 2220 000 01 111122222333333 1211100 1112566667665544 4667778888888887
Q ss_pred cCChhhHHHHHhcCChHHHHHhh-CCC----CHHHHHHHHHHHHHhhc-CCCcchhhHhcCCHHHHHHhhcCCChhHHHH
Q 007101 320 ATDSDCKVHIVQRGAVRPLIEML-QSP----DVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393 (618)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~L~~lL-~~~----~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 393 (618)
...+... .-..++..+...+ ... .+...+...|....+.. +++... ..+..|++++.+ +++...
T Consensus 219 NK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~~g~~ 288 (415)
T PF12460_consen 219 NKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PELGQQ 288 (415)
T ss_pred cCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hhhHHH
Confidence 4421111 0012333343333 222 23334444555555543 332221 235567777776 777888
Q ss_pred HHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHH
Q 007101 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 473 (618)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 473 (618)
++.++.-|..+.+..-.-..+..+..|. .+.+-..++|.+++..+..+...+..-+.+|.
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLy--------------------kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLY--------------------KQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHH--------------------hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 8999988876622211111112222221 12345567888888888888888999999999
Q ss_pred hhcCCCccccceec-CCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 474 HLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 474 ~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
++..+-+.....-+ ...+|.|++-+..++++++..+..+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99766553332222 357899999999999999999999999998874
No 130
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.71 E-value=0.00025 Score=54.94 Aligned_cols=86 Identities=27% Similarity=0.297 Sum_probs=69.1
Q ss_pred HHHHHHhh-cCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007101 376 LVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 454 (618)
Q Consensus 376 l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 454 (618)
|+.|++.+ +++++.+|..++.+|+.+- +..+++.|+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------------------------------------------~~~~~~~L~ 37 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------------------------------------------DPEAIPALI 37 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------------------------------------------HHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------------------------------CHhHHHHHH
Confidence 56788888 8889999999999999542 113577899
Q ss_pred HHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCC-ChhhhhhHHHHHH
Q 007101 455 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALF 514 (618)
Q Consensus 455 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~ 514 (618)
.+++++++.+|..|+++|+.+. ....++.|.+++.++ +..+|..|+.+|.
T Consensus 38 ~~l~d~~~~vr~~a~~aL~~i~----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 38 ELLKDEDPMVRRAAARALGRIG----------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHHCCH----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 9999999999999999999883 344799999998875 4556888888874
No 131
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.70 E-value=0.0049 Score=57.38 Aligned_cols=226 Identities=18% Similarity=0.188 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCC-CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 76 DRAAAKRATHVLAELAKNEEVVNWIVEGG-AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g-~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (618)
+.-.++-|++++.++.-.++.|....... +-..++.+++..-.. -++|-..+-+++.++.++++.+.+-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~----------~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGV----------KQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhh----------hhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 44468888999999999888888777644 556788888765331 1888999999999998888874444
Q ss_pred h-CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCch--hhHHHHhcCChHHHHHhh-cC--CCHHHHHHHH
Q 007101 155 D-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVELL-EF--TDTKVQRAAA 228 (618)
Q Consensus 155 ~-~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~i~~L~~ll-~~--~~~~v~~~a~ 228 (618)
. ...+.-++.+.+..... .+.+.|+.++.|++...+. ...... .|-+...++.| +. .|.+++...-
T Consensus 232 K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~ 303 (432)
T COG5231 232 KMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIE 303 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHH
Confidence 3 24577777777776553 7889999999999974432 233333 34333444444 32 3333332211
Q ss_pred HH-----------------HHHh-----hcCC--------cccHHHHHh--cCCHHHHHHhhcCCCHH-HHHHHHHHHHH
Q 007101 229 GA-----------------LRTL-----AFKN--------DENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGVIGN 275 (618)
Q Consensus 229 ~~-----------------L~~l-----~~~~--------~~~~~~~~~--~~~~~~L~~ll~~~~~~-v~~~a~~~L~~ 275 (618)
.. +..| ++.. ..|.+.+.+ ..++..|.++++..++. ....|+.-+..
T Consensus 304 ~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~ 383 (432)
T COG5231 304 RIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQ 383 (432)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHH
Confidence 11 1111 1100 123444443 24578888889876655 45667788888
Q ss_pred HhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 007101 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (618)
Q Consensus 276 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (618)
+.+..|+....+...|+=..++.++.+++++++-+|+.++..+.
T Consensus 384 ~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 384 LVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88889998888888999999999999999999999999887764
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0076 Score=54.78 Aligned_cols=244 Identities=21% Similarity=0.266 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhC
Q 007101 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN 156 (618)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 156 (618)
..-+++|+..|.++..... +..+.+...+.+. ..+...+.+|+... ..
T Consensus 19 l~~r~rALf~Lr~l~~~~~----------i~~i~ka~~d~s~------------llkhe~ay~LgQ~~----------~~ 66 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPAA----------IKAITKAFIDDSA------------LLKHELAYVLGQMQ----------DE 66 (289)
T ss_pred HHHHHHHHHhhhccCChHH----------HHHHHHhcccchh------------hhccchhhhhhhhc----------cc
Confidence 3456777777777765211 3333333333322 33444555554433 23
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007101 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
.+++.++..|.+.+..+ -++..|..+|+++.. ...++.+-++.+++-..++..+..++..+-+
T Consensus 67 ~Av~~l~~vl~desq~p------mvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEP------MVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred hhhHHHHHHhcccccch------HHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 45677777776665532 455566667666552 1233445555555556666666666666544
Q ss_pred CCcccH-------HHH-----HhcCCHHHHHHhhcCCC-H-HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC
Q 007101 237 KNDENK-------NQI-----VECNALPTLILMLRSED-S-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (618)
Q Consensus 237 ~~~~~~-------~~~-----~~~~~~~~L~~ll~~~~-~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 302 (618)
.+.-.. ... ...+-+..+-..+.+.+ + --|+.|...|+|+ +.++ .+..|+.-+..
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Ee---------aI~al~~~l~~ 198 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEE---------AINALIDGLAD 198 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHH---------HHHHHHHhccc
Confidence 211111 000 11122334443333322 2 2355666666665 2222 34456666666
Q ss_pred CChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHH
Q 007101 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 380 (618)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~ 380 (618)
.+.-.|.+++.+++++-+ +. .++.|.+.|.+ .++-||..|+.+|+.++.. ..++.|.
T Consensus 199 ~SalfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~ 257 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLK 257 (289)
T ss_pred chHHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHH
Confidence 677788999999999842 22 47888887765 6788999999999998752 4577788
Q ss_pred HhhcCCChhHHHHHHHHHHHh
Q 007101 381 KLLDSKNGSLQHNAAFALYGL 401 (618)
Q Consensus 381 ~ll~~~~~~v~~~a~~~L~~l 401 (618)
+.+.+..+-|++.+..+|-.+
T Consensus 258 e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 888888888888877777654
No 133
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.66 E-value=0.00016 Score=56.11 Aligned_cols=86 Identities=34% Similarity=0.439 Sum_probs=68.5
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 007101 209 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (618)
Q Consensus 209 i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (618)
|+.|++.+ +++++.+|..++.+|..+-. ..+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888988 88999999999999995532 245899999999999999999999999882
Q ss_pred HhcCCHHHHHHhhcCCCh-hHHHHHHHHHH
Q 007101 288 LAAGALQPVIGLLSSCCS-ESQREAALLLG 316 (618)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~ 316 (618)
....++.|..++.+++. .++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12278899999987654 45788887774
No 134
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.009 Score=66.92 Aligned_cols=358 Identities=17% Similarity=0.118 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
.-+..|+.-++.|+.... +.+ ...++.|+--|-+...+ |+..++. ++..++|....++..-..-.-..++.
T Consensus 972 nSk~GaAfGf~~i~~~a~--~kl--~p~l~kLIPrLyRY~yD----P~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAG--EKL--EPYLKKLIPRLYRYQYD----PDKKVQD-AMTSIWNALITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred hcccchhhchHHHHHHHH--Hhh--hhHHHHhhHHHhhhccC----CcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHH
Confidence 556778888888873221 111 12344444333333222 1225555 45555554433432211122235566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHH---HHHHHhcCC-----
Q 007101 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVG---VIGNLVHSS----- 280 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~---~L~~l~~~~----- 280 (618)
-|+.-+.+..+.+|+.+|-+|..|..+.+. +.+.+ ..+...+.+.+.+-.+.||..|-. +|+.++...
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 777777788899999999999999975332 22332 233445556666666777766554 444443211
Q ss_pred hhHHHHHHhcCCHHHHHH--hhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 007101 281 PNIKKEVLAAGALQPVIG--LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (618)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~--ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~ 358 (618)
....+.++ ..++|.|+. .+ +.-.++|+.++.++..++...+... ...-..+++.|+.....-++.+.-+...=+.
T Consensus 1121 ~~~~~~~l-~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~ 1197 (1702)
T KOG0915|consen 1121 GAKGKEAL-DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELEPQVLNYLSLRLI 1197 (1702)
T ss_pred cccHHHHH-HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhh-cchhhHHHHHHHHHccccchHHHHHHHHhhh
Confidence 11111111 113343331 12 4456789999999999985544321 1122456777777777766665443222223
Q ss_pred HhhcCC--CcchhhH-hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhH-HHhhcccccccccchhhhhHHHHH
Q 007101 359 RLAQDM--HNQAGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKLQDGEFIVQATKDCV 434 (618)
Q Consensus 359 ~l~~~~--~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-l~~~~~~~~L~~~~~~~~~~~~~~ 434 (618)
|..... ..|.... ....++.+-.+++.-|..+.+...--+..+.++.-+... .-.+. |...-+.
T Consensus 1198 ~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~---------fI~~L~~--- 1265 (1702)
T KOG0915|consen 1198 NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCAS---------FISLLVQ--- 1265 (1702)
T ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHH---------HHHHHHH---
Confidence 322110 1111111 123345555666666666666655555555544322100 00000 0000000
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcC--CCccccceecCCchHHHHHHhcCCChhhhhhHHHH
Q 007101 435 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS--PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 512 (618)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 512 (618)
.+..=...+.+..+..++..+++.++.++..-+.+.+.++. .+++.+. .+..++..+-.+.+..+..++..
T Consensus 1266 --r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----Lie~~l~~~l~k~es~~siscat 1338 (1702)
T KOG0915|consen 1266 --RLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK-----LIETLLADLLGKDESLKSISCAT 1338 (1702)
T ss_pred --HhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHH-----HHHHHHHHHhccCCCccchhHHH
Confidence 00000112366788889999999999999999999999863 3333332 35555544444444445777777
Q ss_pred HHHhhhhhc
Q 007101 513 LFKLANKAT 521 (618)
Q Consensus 513 L~~L~~~~~ 521 (618)
+.+++++..
T Consensus 1339 is~Ian~s~ 1347 (1702)
T KOG0915|consen 1339 ISNIANYSQ 1347 (1702)
T ss_pred HHHHHHhhH
Confidence 777776643
No 135
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.60 E-value=0.018 Score=59.03 Aligned_cols=339 Identities=18% Similarity=0.124 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChh-----hHH
Q 007101 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-----HQQ 151 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-----~~~ 151 (618)
....+.+.+|..+|.++...+.++. ..+..|-..++.... .+....++.+|.++. ...+ ...
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~-----------~~~~~~il~tl~~~~~~~~~~~~~~~~~ 84 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS-----------SDYCHAILSTLQSLLEKKQEDKQFEDNS 84 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHHhcccccccchHH
Confidence 3466788899999998776666543 444444444443332 266677778887776 2211 123
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc----------C---
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------F--- 218 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~----------~--- 218 (618)
...+...++.+.+..-........ ....+...+..++..+...-+..+..-. +..+..+.- .
T Consensus 85 ~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 85 WYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred HHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccc
Confidence 333444788888777554332211 1125666666666666654443333222 222332221 0
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHH
Q 007101 219 ---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (618)
Q Consensus 219 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (618)
.......-...++..+-....-. .....+..++.+.. ..++..+..++.+++.++...+... .-...+.
T Consensus 160 ~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~ 232 (415)
T PF12460_consen 160 ISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLD 232 (415)
T ss_pred cccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHH
Confidence 11122222333444443211101 11125666777655 4568889999999998876522211 0112333
Q ss_pred HHHHhh-cCCChhHHHHHH----HHHHHHh-cCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC---
Q 007101 295 PVIGLL-SSCCSESQREAA----LLLGQFA-ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--- 365 (618)
Q Consensus 295 ~L~~ll-~~~~~~~~~~a~----~~L~~l~-~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--- 365 (618)
.+...+ .......+..+. |+...+. .+++.. ..++..|+.++.+ +.+...++.++.-+..+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~------~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l 304 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA------TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVL 304 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH------HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhc
Confidence 333333 222333343333 3333332 222221 2246778888876 6677788888888876521
Q ss_pred ------cchhhHhcC----CHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHH
Q 007101 366 ------NQAGIAHNG----GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 435 (618)
Q Consensus 366 ------~~~~l~~~~----~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~ 435 (618)
+-+.+.+.. .++.|++-.+..+...+.+.+.+|.++..+-+....+-
T Consensus 305 ~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~----------------------- 361 (415)
T PF12460_consen 305 NKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP----------------------- 361 (415)
T ss_pred CccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-----------------------
Confidence 112233333 35666666677677788888999999886644311111
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc
Q 007101 436 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (618)
Q Consensus 436 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 480 (618)
.-+.++|-+++-|..++.+++..++.+|..+.....
T Consensus 362 ---------~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 362 ---------ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred ---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 123578889999999999999999999999976653
No 136
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.014 Score=53.15 Aligned_cols=225 Identities=19% Similarity=0.215 Sum_probs=137.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (618)
+..+.....+++.......+.+|.+... ...++.|+..+.+ ..+-||..|..+|+.+. . +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~---- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---- 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh----
Confidence 4444444444444455556666666553 4668888888774 45678889999998885 2 22
Q ss_pred HHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhH-----HH-------HHhcCChHHHHHhhCC-CCHH-HHHH
Q 007101 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-----VH-------IVQRGAVRPLIEMLQS-PDVQ-LREM 352 (618)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~-------l~~~~~~~~L~~lL~~-~~~~-v~~~ 352 (618)
.++.+-+..+++..++++.+..++..+-..+.-.. .. -...+-+..+-..|.+ ..+. -|..
T Consensus 101 -----~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 101 -----SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred -----hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 45666677767777777766666666632110000 00 0011223444443333 2222 2334
Q ss_pred HHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHH
Q 007101 353 SAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 432 (618)
Q Consensus 353 a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~ 432 (618)
+...|.|+.. ...+..|.+-+...+.-.|..++.+++.|-..
T Consensus 176 amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~---------------------------- 217 (289)
T KOG0567|consen 176 AMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP---------------------------- 217 (289)
T ss_pred hhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch----------------------------
Confidence 4455555432 12355566666667777888888888876422
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhC--CHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHH
Q 007101 433 CVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGA 510 (618)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 510 (618)
..++.|...|.+. ++.+|..|+.+|+.++. ...++.|.+.+.+..+-+++.+.
T Consensus 218 ---------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~ 272 (289)
T KOG0567|consen 218 ---------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCE 272 (289)
T ss_pred ---------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2345566666654 78999999999998854 44688999999998888888887
Q ss_pred HHHHHhhh
Q 007101 511 VALFKLAN 518 (618)
Q Consensus 511 ~~L~~L~~ 518 (618)
.+|--+-.
T Consensus 273 valdm~ey 280 (289)
T KOG0567|consen 273 VALDMLEY 280 (289)
T ss_pred HHHHHHHH
Confidence 77765544
No 137
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.54 E-value=6.5e-05 Score=67.30 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCcccchhHhhhcCCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCC--ceecCCCCHHHHHHHHHHHhC
Q 007101 533 PTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFDEF 610 (618)
Q Consensus 533 ~~~~~~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~--~i~~~~~~~~~~~~~l~~~Yt 610 (618)
.+...++. ..+......|+-+.....-|++||.+|++||++|+-+.++........ .|..-+++.++|+.+|+|+||
T Consensus 115 ~sf~kD~a-d~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~t 193 (401)
T KOG2838|consen 115 NSFLKDFA-DGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLIT 193 (401)
T ss_pred hHHHHHHh-hhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHh
Confidence 34555553 345566667888888889999999999999999999887643222222 455668999999999999999
Q ss_pred Cccc
Q 007101 611 CAFN 614 (618)
Q Consensus 611 ~~~~ 614 (618)
|+.-
T Consensus 194 gEfg 197 (401)
T KOG2838|consen 194 GEFG 197 (401)
T ss_pred cccc
Confidence 9753
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.53 E-value=0.00042 Score=53.86 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhc
Q 007101 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (618)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 248 (618)
++...+.+|+|+|..++.++..+.+.|+++.++.... ..+|-+++.|..++.+|+.+++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999999999999999999999999875 4569999999999999999999998887663
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.19 Score=53.92 Aligned_cols=160 Identities=9% Similarity=0.071 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
+-..+.-++++.++.+.+.. ...+.+++.....+. ++++.+-.-|.+.+..+|. ..+. ++.
T Consensus 35 ~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~--~~lL---avN 95 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPE--LALL---AVN 95 (757)
T ss_pred HHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHH--HHHH---HHH
Confidence 44555666777777443322 235566666664443 8888777777777876663 2222 467
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhc
Q 007101 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (618)
.+..=++++++.+|..|++.+..+=. + .+.. .+++.+.++++++++.||..|+-++.++-.-++ ....+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~--~----el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV--K----ELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh--H----HHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcc
Confidence 88888899999999999998887743 2 2222 357788999999999999999999999965543 345567
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 007101 291 GALQPVIGLLSSCCSESQREAALLLGQFA 319 (618)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (618)
|.+..+..++.+.++.+...|..+|..+.
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 88899999999999999999999999985
No 140
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.52 E-value=0.0075 Score=56.17 Aligned_cols=225 Identities=12% Similarity=0.095 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCC-cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHh-cCC
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGG 208 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~~ 208 (618)
..+.-|.+++.++...++.|...-... .-..++.++++.-... +++.+.+-+++.++. ++.....+-. ...
T Consensus 164 lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~------qlQY~SL~~iw~lTf-~~~~aqdi~K~~dl 236 (432)
T COG5231 164 LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVK------QLQYNSLIIIWILTF-SKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 678889999999998899887765444 4456677777664422 788899999999998 3333322221 245
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhc-----
Q 007101 209 IPPLVELLEFT-DTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLR---SEDSAIHYEAVGVIGNLVH----- 278 (618)
Q Consensus 209 i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~a~~~L~~l~~----- 278 (618)
+..++.+.+.. ...+.+.++.++.|++...+ .....+.-.|-+...++.|. -.+++++...-..=..+..
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 56677777653 46788999999999997433 22333333343444455544 2344444332222111111
Q ss_pred ----------------CCh---------hHHHHHHh--cCCHHHHHHhhcCCChhH-HHHHHHHHHHHhcCChhhHHHHH
Q 007101 279 ----------------SSP---------NIKKEVLA--AGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIV 330 (618)
Q Consensus 279 ----------------~~~---------~~~~~~~~--~~~l~~L~~ll~~~~~~~-~~~a~~~L~~l~~~~~~~~~~l~ 330 (618)
.+| .+...+.. ..++..|.++++...+.+ ..-|+.-+..+....|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 011 11222222 235677888888776653 33456666777777789889899
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 331 ~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
..|+=+.+++++.+++++|+.+|..++..+..
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999887654
No 141
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.035 Score=60.36 Aligned_cols=257 Identities=21% Similarity=0.230 Sum_probs=152.2
Q ss_pred CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHH
Q 007101 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (618)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (618)
.+++..|+..|++.+. .|+-.|++.++.++ ..|.. ....++...+.++...+++ ..
T Consensus 340 E~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~-------~a 396 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDD-------SA 396 (1133)
T ss_pred HHHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCch-------hH
Confidence 4667888888888887 89999999999999 55521 1223466677765555432 56
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCCccc-HHHHHhcCCHH
Q 007101 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--------TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALP 252 (618)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~ 252 (618)
...++-+|..|+...--....+ ...+|.++.-|.- ....+|..||.+++.++...... .+-+... +..
T Consensus 397 WHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s 473 (1133)
T KOG1943|consen 397 WHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LAS 473 (1133)
T ss_pred HHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHH
Confidence 6688889998887433222212 1345556555532 24579999999999998743322 1112211 222
Q ss_pred -HHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC---ChhHHHHHHHHHHHHhcCChhhHHH
Q 007101 253 -TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 253 -~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
.|+..+-+++-.+|+.|..++-...-.. |-.|.=+.++..- ....+.++-..++.-....+..+..
T Consensus 474 ~LL~~AlFDrevncRRAAsAAlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~ 543 (1133)
T KOG1943|consen 474 ALLIVALFDREVNCRRAASAALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP 543 (1133)
T ss_pred HHHHHHhcCchhhHhHHHHHHHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH
Confidence 2334555788888999988876654321 1122112222221 1122223233333222222333222
Q ss_pred HHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007101 329 IVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 329 l~~~~~~~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
+ +..++.. +.+-+..+|+.++++|.+|+.. ..+......+++++....+++...+..+..+.+.+..
T Consensus 544 ~-----f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~---~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 544 V-----FNHLLTKKVCHWDVKIRELAAYALHKLSLT---EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred H-----HHHHHhcccccccHHHHHHHHHHHHHHHHh---hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 2 2222222 4567899999999999998763 2334455778899999988898888877777666653
No 142
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.42 E-value=0.00024 Score=49.22 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 007101 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (618)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l 360 (618)
|.+|..|+++|++++...+..... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999987665554443 4467899999999999999999999999875
No 143
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.39 E-value=0.00099 Score=51.81 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 224 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+.....+|++++..++.+++.+.+.|+++.++.... +.+|-++++|++++.+|+.+++++++.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 556788999999999999999999999999998765 67899999999999999999998866554
No 144
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.016 Score=57.07 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-----CcccHHHHHhcCCHHHH
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPTL 254 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~~~L 254 (618)
.++..|+.+|.-++.+-.-.+..+.+ ....+...+...++.++..+..++..+..+ .|+..+.-...+.+..+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 45556666666665532222222221 223333444556788888888888777532 12221111111212111
Q ss_pred HH------hh-cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC----ChhHHHHHHHHHHHHhcCCh
Q 007101 255 IL------ML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC----CSESQREAALLLGQFAATDS 323 (618)
Q Consensus 255 ~~------ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~ 323 (618)
.- .. .+..+..+..+|-++.++....... ...|--.....++..+ +.-++.+|.+++.-..-+ +
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH-p 422 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLH-P 422 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEec-c
Confidence 11 01 1122344556666666664321100 0000001112222222 222445555555554433 2
Q ss_pred hhH-HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc----CCCcchhhHhcCC----HHHHHHhh---cCCChhHH
Q 007101 324 DCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----DMHNQAGIAHNGG----LVPLLKLL---DSKNGSLQ 391 (618)
Q Consensus 324 ~~~-~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~~~~l~~~~~----l~~L~~ll---~~~~~~v~ 391 (618)
..+ ....-......++..+.+....+|..++|+++|++. +-++-... ...+ +..++... ...+..|+
T Consensus 423 ~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~-~eR~sg~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 423 CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSF-QERFSGLLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 222 222223455666666777778899999999999874 11221111 1111 22222222 22467788
Q ss_pred HHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHH-HhhCCHhHHHHHHH
Q 007101 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL-MRVAEKGVQRRVAL 470 (618)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~ 470 (618)
.++..+|+|+...-+. +.+.+.- + +..+-+..++.. .-.....||-++|+
T Consensus 502 ~navraLgnllQvlq~---i~~~~~~-------------------------e-~~~~~~~~l~~~v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 502 SNAVRALGNLLQFLQP---IEKPTFA-------------------------E-IIEESIQALISTVLTEAAMKVRWNACY 552 (728)
T ss_pred hHHHHHHhhHHHHHHH---hhhccHH-------------------------H-HHHHHHHhcccceecccccccchHHHH
Confidence 8999999988732211 1111100 0 011111112111 12236689999999
Q ss_pred HHHhhcCCCccc--cceecCCchHHHHHHhc-CCChhhhhhHHHHHHHhhhhhc
Q 007101 471 ALAHLCSPDDQR--TIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 471 ~L~~l~~~~~~~--~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~ 521 (618)
+++||-.++... ..-......+.|..++. ..|-++|..|+.+|..-....+
T Consensus 553 a~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred HHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 999998776532 22223345778888876 4899999999999987666543
No 145
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.037 Score=59.16 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=120.8
Q ss_pred HHHHHHH-HHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007101 180 SVIRRAA-DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 180 ~~~~~a~-~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
..+..|+ .+|..+..+++ ... ..+.+++...+.|.++++..-.-|.+.+..+|+ ...- ++..+.+=+
T Consensus 34 ~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~---~~lL--avNti~kDl 101 (757)
T COG5096 34 YKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPE---LALL--AVNTIQKDL 101 (757)
T ss_pred HHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH---HHHH--HHHHHHhhc
Confidence 3344444 46666666444 222 346666766788899999888888888875552 2221 267788888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 007101 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (618)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L 338 (618)
+++++.+|-.|+++++.+= .++. ...+++++.+++.++++.+|+.|+.++.++-..+++ ...+.|.+..+
T Consensus 102 ~d~N~~iR~~AlR~ls~l~--~~el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l 171 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLR--VKEL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDIL 171 (757)
T ss_pred cCCCHHHHHHHHHHHHhcC--hHHH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHH
Confidence 9999999999999999881 1221 223688999999999999999999999999855544 35567788889
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcC
Q 007101 339 IEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 339 ~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
..++.+.+|.|..+|..+|..+...
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 172 KELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999999999999888654
No 146
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.36 E-value=0.00021 Score=49.53 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHh
Q 007101 347 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (618)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (618)
+.+|..|+++|++++........-.....++.|..++.++++.||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999887665555556667899999999999999999999999875
No 147
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.0054 Score=64.43 Aligned_cols=225 Identities=17% Similarity=0.134 Sum_probs=157.0
Q ss_pred ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHH-HhcCChhhHHHHHhCCcHHHHHHHHhhccC
Q 007101 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGALSHLVNLLKRHMD 171 (618)
Q Consensus 93 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~ 171 (618)
....+...++.|+...|+++...... +-+.....+|. .+.. +..+ ....++.+.+.+.....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~f-~~~~----~~~v~~~~~s~~~~d~~ 555 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKIDF-PGER----SYEVVKPLDSALHNDEK 555 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcCC-CCCc----hhhhhhhhcchhhhhHH
Confidence 56667788899999999999887776 66777777777 4441 1111 12345566655555432
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh-cCC
Q 007101 172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNA 250 (618)
Q Consensus 172 ~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~ 250 (618)
. --...++.++.||+..+...+..+.+.-+++.+-.++-..++..++.++..+.||..+..-....+.+ ...
T Consensus 556 ~-------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~ 628 (748)
T KOG4151|consen 556 G-------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDR 628 (748)
T ss_pred H-------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccC
Confidence 1 22345788999999988888888888888888888888899999999999999999854444445555 344
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHH-HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHH
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l 329 (618)
++.....+...++....+++.++..++....+.+. ..........+..++.+.+.+++...+....|+..........+
T Consensus 629 l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~ 708 (748)
T KOG4151|consen 629 LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKI 708 (748)
T ss_pred chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 55555666666777788888888877666555555 33345677888999999999999999998888765444444445
Q ss_pred HhcCChHHHHHh
Q 007101 330 VQRGAVRPLIEM 341 (618)
Q Consensus 330 ~~~~~~~~L~~l 341 (618)
.....++.+..+
T Consensus 709 ~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 709 FETEVMELLSGL 720 (748)
T ss_pred ccchHHHHHHHH
Confidence 444455444443
No 148
>PRK14707 hypothetical protein; Provisional
Probab=97.35 E-value=0.16 Score=59.28 Aligned_cols=322 Identities=19% Similarity=0.190 Sum_probs=166.9
Q ss_pred HHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhh-cCCCCCccccCCCcchhHHHHHHHHH
Q 007101 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHL-QAPPTSEADRNLKPFEHEVEKGSAFA 139 (618)
Q Consensus 61 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (618)
.-+.++.+.++.+..+...+..+......++.++..+..+-..| |-.+++.+ +-++. |..+..+...
T Consensus 163 ~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q~-ia~~lNa~sKWp~~-----------~~c~~aa~~l 230 (2710)
T PRK14707 163 QNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQG-VATVLNALCKWPDT-----------PDCGNAVSAL 230 (2710)
T ss_pred ccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchHH-HHHHHHHHhcCCCC-----------hhHHHHHHHH
Confidence 34455555555555555555555555556666666666664444 44444444 44544 3555444444
Q ss_pred HHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCC
Q 007101 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219 (618)
Q Consensus 140 L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~ 219 (618)
-..++.....+..+ +...+...++.|..-.+. ..-..++..|..=...++..+..+-..+.-..|-.+-+-+
T Consensus 231 a~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~-------~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwp 302 (2710)
T PRK14707 231 AERLADESRLRNEL-KPQELGNALNALSKWADT-------PVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWA 302 (2710)
T ss_pred HHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCC
Confidence 44455555554443 334466666666665543 3444555555433334555555554444444444455567
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHH
Q 007101 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (618)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 298 (618)
+..+-..+...|..=..+++..++.+--. .+...++.| +=++..+...|+..|..-...++..++.+-..|+-..|-.
T Consensus 303 d~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNa 381 (2710)
T PRK14707 303 DLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNA 381 (2710)
T ss_pred CchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhh
Confidence 76666666666554444455555444333 344444444 3455556666666666655566666665554444444444
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH-hhcCCCcchhhHhcCCH
Q 007101 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR-LAQDMHNQAGIAHNGGL 376 (618)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~-l~~~~~~~~~l~~~~~l 376 (618)
+-+-++..+-..++..|..=...+++.+..+-..| +..+++-|.. ++..+...++..|.- ++.+.+-+..+- ...+
T Consensus 382 lsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~-p~~v 459 (2710)
T PRK14707 382 LSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALD-PINV 459 (2710)
T ss_pred hhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcC-hHHH
Confidence 44445566666666666655556666666554444 4445554544 666666666666554 443333333222 2223
Q ss_pred HHHHHhh-cCCChhHHHHHHHHHH-HhhcCC
Q 007101 377 VPLLKLL-DSKNGSLQHNAAFALY-GLADNE 405 (618)
Q Consensus 377 ~~L~~ll-~~~~~~v~~~a~~~L~-~l~~~~ 405 (618)
...++.+ +-++..+...++..|. .|+...
T Consensus 460 a~~LnalSKWPd~p~c~~aa~~La~~l~~~~ 490 (2710)
T PRK14707 460 TQALDALSKWPDTPICGQTASALAARLAHER 490 (2710)
T ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcccH
Confidence 3333333 3455555555554443 344433
No 149
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.0028 Score=62.23 Aligned_cols=306 Identities=16% Similarity=0.145 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHHhccChh-hHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcC------Chh
Q 007101 76 DRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV------KPE 148 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~------~~~ 148 (618)
...++.++...|..++..-. .+..+++ ....+..-+.... |.++..+++++..+-. .|+
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~------------p~~~l~~a~ll~~lg~~lv~~~~P~ 333 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEAD------------PSIQLHGAKLLEELGTGLIQQYKPD 333 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCC------------hHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 44589999999998887422 2222221 1111222222222 3889999988877651 222
Q ss_pred hHHHHHhCCcHHHHH------HHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc-CCCH
Q 007101 149 HQQLIVDNGALSHLV------NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDT 221 (618)
Q Consensus 149 ~~~~~~~~g~l~~L~------~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~ 221 (618)
..+.-...|.+-.++ ..+-+... +......+..+.++....-..-. -......+.+..-+. +.+.
T Consensus 334 ~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-------~Tl~~s~Cdals~i~~~~f~~lp-n~~~T~~~~Fl~GC~d~~~~ 405 (728)
T KOG4535|consen 334 STKAPDQRAPFWTMMLNGPLPRALYDSEH-------PTLQASACDALSSILPEAFSNLP-NDRQTLCITFLLGCNDSKNR 405 (728)
T ss_pred cccchhhhccHHHHHccCCChhhhhhhcC-------CCchhHHHHHHhhcCchhhcCCC-CcchhhhHHHHhcccchHHH
Confidence 211111112111111 01111111 14555666666666541110000 000011122222222 2334
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC----Chh---HHHHHHhcCCHH
Q 007101 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS----SPN---IKKEVLAAGALQ 294 (618)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~~~~~~~l~ 294 (618)
-++..|.+++..+.-+.....+...-.++...++..+.+..-..|..+.|+++|++.. -+. ....+.. -.+.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~ 484 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLL 484 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHH
Confidence 4666677777666653322222222234566677777777778899999999999642 122 1111111 1222
Q ss_pred HHHHhhc---CCChhHHHHHHHHHHHHhcCCh---hhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCCCcc
Q 007101 295 PVIGLLS---SCCSESQREAALLLGQFAATDS---DCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGRLAQDMHNQ 367 (618)
Q Consensus 295 ~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~---~~~~~l~~~~~~~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (618)
.++.... ..+.+++..+..+|+|+...-. +........+.+..++. ........|+.++|.+++||..+..-.
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 2332222 2356788889999999852111 00011111122222222 222357789999999999999876442
Q ss_pred --hhhHhcCCHHHHHHhhcC-CChhHHHHHHHHHHHhhcC
Q 007101 368 --AGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 368 --~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 404 (618)
..=+.....+.|..++.+ .+..||..|+.+|..-...
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 222233346667777744 6889999999999876543
No 150
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.32 E-value=0.00012 Score=68.98 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=49.2
Q ss_pred eEEehhHHHHhcCCHHHHHhhcCCCCCCCC-C---ceecCCCCHHHHHHHHHHHhCCccccCC
Q 007101 559 RRFYAHRICLLASSDAFRAMFDGGYREKDA-R---DIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 559 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~-~---~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
..+|||+.+++ |.+||+.||.|+|.|++. . ...+++....+.+..++|+|+++.++.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~ 362 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF 362 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH
Confidence 45999999998 899999999999999652 2 3457788899999999999999987754
No 151
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.42 Score=52.01 Aligned_cols=318 Identities=15% Similarity=0.099 Sum_probs=168.8
Q ss_pred HHHHHHHhhcccc--chHHhHHHHHHHHHHHHHhcc---ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHH
Q 007101 59 VSAQVNVLNTTFS--WLEADRAAAKRATHVLAELAK---NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (618)
Q Consensus 59 v~~l~~~l~~~~~--~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~ 133 (618)
++-+++++.+.-. ....+......|++.++++++ -+..-+-..+.=.++.+.+.++++.. -+|
T Consensus 412 l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g------------~Lr 479 (1010)
T KOG1991|consen 412 LSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG------------YLR 479 (1010)
T ss_pred HHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh------------HHH
Confidence 3344444443221 233455566777888888775 12222222333346677777888777 899
Q ss_pred HHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHh--cCChH
Q 007101 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIP 210 (618)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~~~i~ 210 (618)
.+|+|.++.++ .+-... ..-..++....+.|.+++.- .++..|+-+|..+....+.....+.. .+.++
T Consensus 480 arac~vl~~~~~~df~d~--~~l~~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKDP--NNLSEALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAHVPPIMQ 550 (1010)
T ss_pred HHHHHHHHHHHhccCCCh--HHHHHHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence 99999999999 222211 11223466666777743332 78888999998888766654333332 23344
Q ss_pred HHHHhhcCCCHHHHHHHHHH-HHHhhcCCcccHHHHHhcCCHHHHHHhhcC---C---CHHHHHHHHHHHHHHhc-----
Q 007101 211 PLVELLEFTDTKVQRAAAGA-LRTLAFKNDENKNQIVECNALPTLILMLRS---E---DSAIHYEAVGVIGNLVH----- 278 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~---~~~v~~~a~~~L~~l~~----- 278 (618)
.++.+.+..+.+....++.. +...+..-......++ ..+...+.+++.. . +.+=...|.++|..+..
T Consensus 551 ~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 551 ELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 44555554443333333332 2223221111112222 2345566666662 1 23345556666655532
Q ss_pred -CChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 007101 279 -SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (618)
Q Consensus 279 -~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L 357 (618)
..++..+. +..-.++.+-.+|.+.-.++-++++..+.+++...++....++ ++++.+.+.+++...+.-....-+|
T Consensus 630 e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l 706 (1010)
T KOG1991|consen 630 ENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPAL 706 (1010)
T ss_pred hccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 12221111 1223556666677777777888888877777654433333333 4677777777777777777778888
Q ss_pred HHhhcCCCcchhhHhcC-CHH----HHHHhhcCC--ChhHHHHHHHHHHHhhc
Q 007101 358 GRLAQDMHNQAGIAHNG-GLV----PLLKLLDSK--NGSLQHNAAFALYGLAD 403 (618)
Q Consensus 358 ~~l~~~~~~~~~l~~~~-~l~----~L~~ll~~~--~~~v~~~a~~~L~~l~~ 403 (618)
.|......+ .+...+ .+. ..-.++.+. ...-.+.|+..+..+..
T Consensus 707 ~N~vt~g~~--~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL 757 (1010)
T KOG1991|consen 707 HNYVTYGTP--SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIIL 757 (1010)
T ss_pred hhheeeCch--hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 887664332 222222 122 233344442 22334556676666653
No 152
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.032 Score=58.17 Aligned_cols=338 Identities=18% Similarity=0.158 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
-+|-..++.|.+|- .++. -...+|.+...|...+. -++++|.-++..+....+. +. ..+-.
T Consensus 114 yiRG~TLRFLckLk-E~EL-----lepl~p~IracleHrhs--------YVRrNAilaifsIyk~~~~----L~-pDape 174 (948)
T KOG1058|consen 114 YIRGSTLRFLCKLK-EPEL-----LEPLMPSIRACLEHRHS--------YVRRNAILAIFSIYKNFEH----LI-PDAPE 174 (948)
T ss_pred hhcchhhhhhhhcC-cHHH-----hhhhHHHHHHHHhCcch--------hhhhhhheeehhHHhhhhh----hc-CChHH
Confidence 55555555554443 2232 23456777777777665 8899998888887763221 11 23334
Q ss_pred HHHHhh-cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh---hcCCCHHHHHHHHHHHHHHhcCChhHHHH
Q 007101 211 PLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM---LRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (618)
Q Consensus 211 ~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l---l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (618)
.+-.+| ...|+...+.|...|...- ++. ++..|... ..+-++..+...+..+...+..++..+..
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D---~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~ 243 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTD---PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR 243 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcC---HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH
Confidence 444444 4567888888776666543 222 22223222 22345777888888888887766654333
Q ss_pred HHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCC
Q 007101 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 365 (618)
.+..+..+|.+.++.++.+|+.+|-+++. +|...+. ....+++++.. ++..++.-...-|..+..
T Consensus 244 -----~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~--- 309 (948)
T KOG1058|consen 244 -----YIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA--- 309 (948)
T ss_pred -----HHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh---
Confidence 57789999999999999999999998863 3443222 23445554432 344444443333444432
Q ss_pred cchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC--CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHH
Q 007101 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (618)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 443 (618)
....+. .+.+--+++.|.+++-+++..++.+...|+.+ .+....+.+......--.-..+...-+..+.+++.....
T Consensus 310 ~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 310 LHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred hhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence 111111 23344578889999999999999998888643 222222222222111100011122224444443333322
Q ss_pred H---HhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC-CccccceecCCchHHHHHHhcC-CChhhhhhHHHHHHHhhh
Q 007101 444 K---IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 444 ~---~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 518 (618)
. +...+++.|++.+.+.++.....++..+...... ++-| ...+..|++-+.. ....+-.-|+|.+..-+.
T Consensus 389 ~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-----~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 389 KFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-----ASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-----HHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 2 3567888899999998877666555555544322 2222 2245555544432 444555566666654443
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.21 E-value=0.25 Score=48.41 Aligned_cols=262 Identities=14% Similarity=0.146 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHh--CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 007101 131 EVEKGSAFALGLLA-VKPEHQQLIVD--NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (618)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~--~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (618)
++.+.+...|..+. .....++...+ ...+..+-.+|-+..+.. ...+. +..|+ ..+...+
T Consensus 14 ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~e------p~~e~----v~qLa-------~Ei~~~d 76 (335)
T PF08569_consen 14 ELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPE------PNPEQ----VAQLA-------QEIYRSD 76 (335)
T ss_dssp HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----------HHH----HHHHH-------HHHHHHT
T ss_pred HHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCC------CCHHH----HHHHH-------HHHHHhC
Confidence 67778888888883 22222222221 123444555555554321 11121 22222 2244567
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccH-----HHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-----NQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 281 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 281 (618)
.+..|+..|..-+-+.+..+..+..++.......+ +.+.. ..-+.+..++. .+++++...+...|+.++.. +
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRec~k~-e 154 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRECIKH-E 154 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHHHHhh-H
Confidence 88899999999999999999999999987543332 22222 22333333443 34667777888888888766 6
Q ss_pred hHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhc---CChHHHHHhhCCCCHHHHHHHHHHHH
Q 007101 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSAFALG 358 (618)
Q Consensus 282 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~---~~~~~L~~lL~~~~~~v~~~a~~~L~ 358 (618)
...+.++....+-.+......++-++...|..++..+-...+......+.. .++..+-.+|.+++.-++..++..|+
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ 234 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLG 234 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHH
Confidence 666778888888889999999999999999999999776666655555543 45677788999999999999999999
Q ss_pred HhhcCCCcchh----hHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHH
Q 007101 359 RLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 411 (618)
Q Consensus 359 ~l~~~~~~~~~----l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 411 (618)
.+..+..+... +.+...+..+..+|.+++..+|..|..++.-+..++.....+
T Consensus 235 ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 235 ELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred HHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHH
Confidence 99988777543 334455778999999999999999999999998887654444
No 154
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.21 E-value=0.041 Score=49.54 Aligned_cols=151 Identities=11% Similarity=0.114 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChhhHHHHHhCC
Q 007101 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~g 157 (618)
...|+..|.-++++|+.+..|.++.+--.|-++|...+.+. |+ .-+|..++..++.|. ++.+.-..+...+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r------~f-EyLRLtsLGVIgaLvk~dd~eVi~fLl~Te 168 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSR------PF-EYLRLTSLGVIGALVKNDDQEVIRFLLTTE 168 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCC------ch-HHHhHHHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 56778888888999999999999998778888887765532 22 268999999999999 6677777788899
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhH------HHHhc-CCh-HHHHHhhcCCCHHHHHHHHH
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRME-GGI-PPLVELLEFTDTKVQRAAAG 229 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~------~~~~~-~~i-~~L~~ll~~~~~~v~~~a~~ 229 (618)
++|..++.+...+. ..+..|..++..+..++....- .+..- -.+ ..+..+.+.+++.+...+.+
T Consensus 169 IVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviR 240 (293)
T KOG3036|consen 169 IVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIR 240 (293)
T ss_pred hHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999998876 7777888888888765554322 11111 122 33445556788999999999
Q ss_pred HHHHhhcCCcccHHHHH
Q 007101 230 ALRTLAFKNDENKNQIV 246 (618)
Q Consensus 230 ~L~~l~~~~~~~~~~~~ 246 (618)
+..+|+. ++..+..+.
T Consensus 241 cYlrLsd-nprar~aL~ 256 (293)
T KOG3036|consen 241 CYLRLSD-NPRARAALR 256 (293)
T ss_pred HHHHhcC-CHHHHHHHH
Confidence 9999996 666655543
No 155
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.13 Score=51.34 Aligned_cols=266 Identities=16% Similarity=0.064 Sum_probs=137.7
Q ss_pred hcCCHHHHHHhh----cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 007101 247 ECNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (618)
Q Consensus 247 ~~~~~~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (618)
+.|.+..++..+ .+++..++..|+++|++.++.-|+........-+...+..+....+.++..++..+|..+...-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 345555544433 4778899999999999999885654443333323344455566667889988888888775221
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--CcchhhHh--cCCHHHHHHhhcCCChhHHHHHHHHH
Q 007101 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFAL 398 (618)
Q Consensus 323 ~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (618)
......-.--++.-.+..+..+.++++|.++...++.|+... ..+..+.+ .+...+|+-.+.++++.+.. ||...
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~ 410 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSE 410 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHH
Confidence 111111111233455667788899999999999999887633 33333332 23445566666777776644 45555
Q ss_pred HHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCHhHHHHHHHHHHh
Q 007101 399 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRRVALALAH 474 (618)
Q Consensus 399 ~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~ll~~~~~~v~~~a~~~L~~ 474 (618)
...+...-.+++. .+.++..++.... .........+..+.. ++.+ .......++++.-+.+|..+..--.+
T Consensus 411 ~~~c~p~l~rke~--~~~~q~~ld~~~~--~~q~Fyn~~c~~L~~-i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~ 485 (533)
T KOG2032|consen 411 LRTCYPNLVRKEL--YHLFQESLDTDMA--RFQAFYNQWCIQLNH-IHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTR 485 (533)
T ss_pred HHhcCchhHHHHH--HHHHhhhhHHhHH--HHHHHHHHHHHHHhh-hCHHHHHHHHHhchhheecchHHHHHHHHHHHHH
Confidence 4444221122111 1222222211000 000000000111111 1111 11222233333444556555554444
Q ss_pred hcCCCc--cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhh
Q 007101 475 LCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 475 l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (618)
+-.+-. .+...--.-....|-.+..++-++++..|..|+..+..
T Consensus 486 ~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 486 SVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 432211 11111111124456667778999999999999887765
No 156
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.099 Score=54.75 Aligned_cols=238 Identities=13% Similarity=0.184 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHh
Q 007101 77 RAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (618)
Q Consensus 77 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (618)
...|.--++.+...+. +|..+..+ +..+..+|.+.++ .|+-.|+..|.+++.+|..-...
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~A-- 280 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKAA-- 280 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHHH--
Confidence 3455555666666665 44444333 6778889988876 88999999999999777654332
Q ss_pred CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007101 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (618)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 235 (618)
...++.++-...+. .+....+.-|..+...+. ..+ .|.+--++++|.++|-+++..++.....|+
T Consensus 281 ---a~~~i~l~~kesdn-------nvklIvldrl~~l~~~~~---~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 281 ---ASTYIDLLVKESDN-------NVKLIVLDRLSELKALHE---KIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred ---HHHHHHHHHhccCc-------chhhhhHHHHHHHhhhhH---HHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 35566666555442 455555555655553222 222 356677888999999999999999988888
Q ss_pred cCCcccHHHHHhcCCHHHHHH-hhc------CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHH
Q 007101 236 FKNDENKNQIVECNALPTLIL-MLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (618)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~-ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 308 (618)
.. .+...+. ..|-+ +.+ +.+...|..-+.++...+...++.... +++.++..+.+.++...
T Consensus 346 ss--rNvediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-----vV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 346 SS--RNVEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-----VVSLLLDFISDSNEAAA 413 (948)
T ss_pred hh--ccHHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-----HHHHHHHHhccCCHHHH
Confidence 62 2322222 11211 111 234567888889999988777765433 67889999999888776
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCC
Q 007101 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 365 (618)
...+..+.......|..+..+ +..++.-+.. ....+-..++|.++.-|....
T Consensus 414 s~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 666666666655545544433 4445554432 455666788888888776543
No 157
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.13 E-value=0.001 Score=42.64 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=34.3
Q ss_pred hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc
Q 007101 94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (618)
Q Consensus 94 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~ 144 (618)
++++..+++.|+++.|+++|++++. +++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~------------~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDE------------EVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHc
Confidence 3467788999999999999996665 99999999999986
No 158
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.10 E-value=0.00061 Score=61.24 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=72.2
Q ss_pred cCCchHHHHHHhcC---CChhhhhhHHHHHHHhhhhhccCCcccCCCCCCCcccchhHhhhcCCCcccEEEEE-C-----
Q 007101 487 DGGGLELLLGLLGS---TNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLV-E----- 557 (618)
Q Consensus 487 ~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~-~----- 557 (618)
+..++..++..+.. .-++.+..-...|..|+........ +..++...|.....+.|+++.+ +
T Consensus 180 dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~kk---------Ld~Dmkglfd~~c~~d~li~~ssD~elve 250 (401)
T KOG2838|consen 180 DMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCFKK---------LDEDMKGLFDQDCKHDDLIIESSDGELVE 250 (401)
T ss_pred ChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCchh---------hhHHHHHHHHhhcccCcEEEEeccchhhh
Confidence 33445555544432 3455565667777788776544322 2222222222233334444433 2
Q ss_pred ---------CeEEehhHHHHhcCCHHHHHhhcCCCCCCCC---------CceecCC-CCHHHHH-HHHHHHhCCccccC
Q 007101 558 ---------GRRFYAHRICLLASSDAFRAMFDGGYREKDA---------RDIEIPN-IRWEVFE-LMMRFDEFCAFNLS 616 (618)
Q Consensus 558 ---------~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~---------~~i~~~~-~~~~~~~-~~l~~~Yt~~~~~~ 616 (618)
+.+++||+.|.++||++||.++....+|+.. ..|.+.+ |-|..|. .++.|+||+.++++
T Consensus 251 afggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 251 AFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred hcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchh
Confidence 2469999999999999999999765544332 2455554 5566665 67899999998765
No 159
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.10 E-value=0.0014 Score=42.07 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=35.4
Q ss_pred cccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 007101 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (618)
++++..+.+.|+++.|++++++++++++..++++|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999986
No 160
>PRK14707 hypothetical protein; Provisional
Probab=97.05 E-value=0.79 Score=54.05 Aligned_cols=299 Identities=17% Similarity=0.159 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcH
Q 007101 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l 159 (618)
+..|...-..+..+++.+..+-..++-..|-.+-+-++. +..+..|...-..++.+++.+..+- ..++
T Consensus 308 ~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~-----------~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~ 375 (2710)
T PRK14707 308 AEAAIALAERLADDPELCKALNARGLSTALNALSKWPDN-----------PVCAAAVSALAERLVADPELRKDLE-PQGV 375 (2710)
T ss_pred HHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCc-----------hhHHHHHHHHHHHhccCHhhhcccc-hhHH
Confidence 333334444455566666555444444444444444555 1444444444455568887776654 3456
Q ss_pred HHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 007101 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (618)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 239 (618)
...++.|+.-.+. ..-+.+...|..-..+++..+..+-..|.-..|-.+.+-++..+-..+...|..-..++.
T Consensus 376 a~~lNalsKWp~~-------~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~ 448 (2710)
T PRK14707 376 SSVLNALSKWPDT-------PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDT 448 (2710)
T ss_pred HHHHhhhhcCCCc-------hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccH
Confidence 6677777766553 555556666655555688888877777776777777777888877777777776666566
Q ss_pred ccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChh-HHHHHHHHHHHH
Q 007101 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE-SQREAALLLGQF 318 (618)
Q Consensus 240 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~~~~a~~~L~~l 318 (618)
+.++.+--.++...|--+-+=++..+...++..|..-.....+.++.+--.++...|-.+-+-++.. ..+.+.++-+.+
T Consensus 449 ~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl 528 (2710)
T PRK14707 449 ELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERV 528 (2710)
T ss_pred HHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHh
Confidence 6666555444444443444445656666666666554455455544444344444444444444433 334444455555
Q ss_pred hcCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcC-CChhHHHHHHH
Q 007101 319 AATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAF 396 (618)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~ 396 (618)
. ........+...+ +..+++ +-+.++....+.+...|..+.........-.....+..+++.|+. ++......++.
T Consensus 529 ~-~~~~l~~~~~~~~-~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~ 606 (2710)
T PRK14707 529 V-DELQLRKAFDAHQ-VVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVN 606 (2710)
T ss_pred c-cchhhhhhhhhHH-HHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHH
Confidence 3 2222222222222 233333 334455555555555566554433333333444556667776643 34333333333
Q ss_pred HHH
Q 007101 397 ALY 399 (618)
Q Consensus 397 ~L~ 399 (618)
.|.
T Consensus 607 ~LA 609 (2710)
T PRK14707 607 ALA 609 (2710)
T ss_pred HHH
Confidence 333
No 161
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.03 E-value=0.018 Score=48.87 Aligned_cols=134 Identities=13% Similarity=0.211 Sum_probs=100.7
Q ss_pred HHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcc
Q 007101 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (618)
Q Consensus 97 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~ 176 (618)
...|++.||++.|+.++.++.. +.|+...+...++.++..|-+..-..-..+....+..++.+......+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~------~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~--- 74 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE------IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDA--- 74 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc------cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccc---
Confidence 4568899999999999988764 1122236777888888888843222233455567888888888655322
Q ss_pred cchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccH
Q 007101 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242 (618)
Q Consensus 177 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 242 (618)
.+.+.|+.+|-++...++.....+.+.--++.|+..|+.++.+++.++...+..|-.+.++.+
T Consensus 75 ---~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 75 ---SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred ---hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 899999999999999777767777777778999999999999999999988888876544443
No 162
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.00 E-value=0.022 Score=56.93 Aligned_cols=202 Identities=15% Similarity=0.193 Sum_probs=132.5
Q ss_pred HHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCC----------CccccCC------------CcchhHHHHHHHH
Q 007101 82 RATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPT----------SEADRNL------------KPFEHEVEKGSAF 138 (618)
Q Consensus 82 ~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~----------~~~~~~~------------~~~~~~v~~~a~~ 138 (618)
+|++.|-.+.. .+.....+...+++..++..|+..-. ...+.++ +++...+....++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 34555555554 45666778888888888776653210 0000000 1111233344445
Q ss_pred HHHHhcC-ChhhHHH---HHh-CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHH
Q 007101 139 ALGLLAV-KPEHQQL---IVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (618)
Q Consensus 139 ~L~~l~~-~~~~~~~---~~~-~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (618)
.+..+.. +....+. +.+ ...+..|..++++...-. ..+...|+.++..+...+|..-..+.+.|.++.++
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG-----~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFG-----PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccc-----hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 5555544 3433332 334 445566666666654321 17888999999999999998889999999999999
Q ss_pred Hhhc-C---CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH-------HHHHHHHHHHHHHhcCChh
Q 007101 214 ELLE-F---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-------AIHYEAVGVIGNLVHSSPN 282 (618)
Q Consensus 214 ~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-------~v~~~a~~~L~~l~~~~~~ 282 (618)
+.+. . ++.++....-.+|..+|- +....+.+.+.+.++.+++++.+++- +........+-.|.++.+.
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 9887 3 457788888888999997 88889999999999999999876431 3344445556677888888
Q ss_pred HHHHHHh
Q 007101 283 IKKEVLA 289 (618)
Q Consensus 283 ~~~~~~~ 289 (618)
.+..+++
T Consensus 237 Lk~~i~~ 243 (379)
T PF06025_consen 237 LKPDIID 243 (379)
T ss_pred HHHHHHH
Confidence 7666654
No 163
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.99 E-value=0.047 Score=53.39 Aligned_cols=204 Identities=14% Similarity=0.144 Sum_probs=145.9
Q ss_pred HHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhH-----HHHh--cCChHHHHHhhcCCCHHH
Q 007101 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-----RVRM--EGGIPPLVELLEFTDTKV 223 (618)
Q Consensus 151 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~-----~~~~--~~~i~~L~~ll~~~~~~v 223 (618)
..+...+.+..|+..|..-+- +.+..+..+..++.......+. .+.. ..++..|+..-+ ++++
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~f--------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~di 139 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDF--------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDI 139 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-H--------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTT
T ss_pred HHHHHhCHHHHHHHHhhhCCC--------cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--Cccc
Confidence 445566888888888887755 8889999999999876554432 1211 122333333333 4556
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcC---CHHHHHHhh
Q 007101 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLL 300 (618)
Q Consensus 224 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll 300 (618)
...+...|+.++. .+...+.+.....+..+.+.++.++-++...|..++..+...++......+... ++.....++
T Consensus 140 al~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 140 ALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677778888886 566677788888899999999999999999999999998777776666666543 567888999
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhH---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 007101 301 SSCCSESQREAALLLGQFAATDSDCK---VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (618)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~~~~~---~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 365 (618)
.+++.-+++.++..|+.+........ +.+.+..-+..++.+|++....++..|...+.-...++.
T Consensus 219 ~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 219 ESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp T-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred cCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 99999999999999999975433322 233345678889999999999999999999988877653
No 164
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.97 E-value=0.0047 Score=48.16 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCC
Q 007101 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387 (618)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~ 387 (618)
|..++.+|..++..-+...... -..+++.++..+.+++++||..||.+|.|++..........-......|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4556666666653333332222 245789999999999999999999999999875433222223456777888999999
Q ss_pred hhHHHHHHHHHHHh
Q 007101 388 GSLQHNAAFALYGL 401 (618)
Q Consensus 388 ~~v~~~a~~~L~~l 401 (618)
+.|+..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9987766 455443
No 165
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.69 Score=49.08 Aligned_cols=271 Identities=16% Similarity=0.122 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
-+...++.++.++....+.. +. ..+..+--++.++.+.+|-.|.++|..++...|.... .+ -.-|-.+..
T Consensus 260 mV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~c----N~elE~lIt 329 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VC----NLDLESLIT 329 (865)
T ss_pred HHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-cc----chhHHhhhc
Confidence 56667888888777644321 21 2677888888889999999999999999975443321 11 123455666
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 007101 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~ 339 (618)
+.+-.+...|...|..- +.+.....++. -++.++.=+++...-+...|..+|++.. +... .+.+..|.
T Consensus 330 d~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~f---p~k~-----~~~m~FL~ 397 (865)
T KOG1078|consen 330 DSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKF---PRKH-----TVMMNFLS 397 (865)
T ss_pred ccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhc---cHHH-----HHHHHHHH
Confidence 66766666666655543 33333333332 1333333344443334455555555543 3222 23466677
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC-CcchhHHHhhccc
Q 007101 340 EMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGV 417 (618)
Q Consensus 340 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~~ 417 (618)
.+|+. +..+.+.....++..+.......+ ..++..|...+.+. +....+..+|.-|-.. +...
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK----e~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~--------- 462 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSK----ERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAP--------- 462 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchh----hHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCC---------
Confidence 76664 566777777888877776443322 33556666666543 2234445555544321 1100
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHH
Q 007101 418 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (618)
Q Consensus 418 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 497 (618)
..+..+..+.....-.+.-+|..|+.+|.++..... .....+.-.|.+.
T Consensus 463 ---------------------------~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc 511 (865)
T KOG1078|consen 463 ---------------------------NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRC 511 (865)
T ss_pred ---------------------------CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHH
Confidence 011233344455555677889999999999972222 1233456677788
Q ss_pred hcCCChhhhhhHHHHHHHhhh
Q 007101 498 LGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 498 l~~~~~~v~~~a~~~L~~L~~ 518 (618)
+.+.+.++|..|...|.++..
T Consensus 512 ~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 512 LNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hcCchHHHHHHHHHHHHHhhh
Confidence 889999999999999988873
No 166
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.93 E-value=0.095 Score=52.44 Aligned_cols=290 Identities=16% Similarity=0.142 Sum_probs=152.9
Q ss_pred hhhhhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcch
Q 007101 50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (618)
Q Consensus 50 ~~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (618)
.+++.+...+..+++-+... ....++..++-.|+.-+.+++.+..|...|.++.++..+.....+
T Consensus 14 Gen~rf~Dev~ylld~l~~~-----~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d---------- 78 (361)
T PF07814_consen 14 GENQRFADEVEYLLDGLESS-----SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD---------- 78 (361)
T ss_pred hhhhhHHHHHHHHHhhcccC-----CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch----------
Confidence 45566777788888877732 233478888888888888999999999999999999999665541
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcc-cc---hHHHHHHHHHHHHhhhcCchhhHHHHh
Q 007101 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR-AV---NSVIRRAADAITNLAHENSSIKTRVRM 205 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~-~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~ 205 (618)
+-.--.++.++.-++.+...-..+.+.+.+..++.+++-........ .. ..........+...+. . ...
T Consensus 79 ~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~------~-~~~ 151 (361)
T PF07814_consen 79 DILALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCK------E-LLS 151 (361)
T ss_pred HHHHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHH------H-HHh
Confidence 12333344445555544444444445666777788887211100000 00 0000001111111111 0 000
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhh--------------cCCcccHHHHHhcCCHHHHHHhhcC----C------
Q 007101 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLA--------------FKNDENKNQIVECNALPTLILMLRS----E------ 261 (618)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~~~~L~~ll~~----~------ 261 (618)
.+... .--......-+..++.++-.++ ...+..++.+.+.|+++.++..+.+ .
T Consensus 152 ~~~~~---~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~ 228 (361)
T PF07814_consen 152 SGSSW---KSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAW 228 (361)
T ss_pred ccccc---cccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 00000 0000111122233333333332 1123446667778889988887751 1
Q ss_pred ------CHHHHHHHHHHHHHHhcCChhHHHHHHhc--CCHHHH-HHhhcCC---ChhHHHHHHHHHHHHhcCChhhHHHH
Q 007101 262 ------DSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPV-IGLLSSC---CSESQREAALLLGQFAATDSDCKVHI 329 (618)
Q Consensus 262 ------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L-~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~l 329 (618)
+......++++|-+.+..++.++..+... +.++.+ ..++... .......++..+.|++..++.....+
T Consensus 229 ~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~ 308 (361)
T PF07814_consen 229 DDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEF 308 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhh
Confidence 11245667788888777666666666643 233332 2333322 23335678889999987776655555
Q ss_pred HhcCChHHHHHh-------hC-------CCCHHHHHHHHHHHHHhhcCC
Q 007101 330 VQRGAVRPLIEM-------LQ-------SPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 330 ~~~~~~~~L~~l-------L~-------~~~~~v~~~a~~~L~~l~~~~ 364 (618)
...++...+..+ +. ....+....++++|.||+.+.
T Consensus 309 ~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 309 ASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred hhhHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence 544333222111 11 123456667888888888754
No 167
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.12 Score=53.98 Aligned_cols=159 Identities=21% Similarity=0.190 Sum_probs=107.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007101 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
++=+.+-+++.+.|+-+|......+.---.+ .. +.+++..|+.. .++.+.+||+.|+.+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G-Tg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVG-TG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhc-cC------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 4445666778888888887766554422111 11 23567777776 66889999999999999998887764
Q ss_pred HHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007101 286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
++..+++|. +.++.+|..++.+|+-.|++..... .+..|-.+..++..-||..|+-++.-+....
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 556666665 4589999999999999887644321 3455556677888899999998888765322
Q ss_pred --CcchhhHhcCCHHHHHHhhcCCChhH
Q 007101 365 --HNQAGIAHNGGLVPLLKLLDSKNGSL 390 (618)
Q Consensus 365 --~~~~~l~~~~~l~~L~~ll~~~~~~v 390 (618)
..... -.++...+.+.+.+++.+.
T Consensus 656 t~~~~pk--v~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 656 TEQLCPK--VNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred ccccCch--HHHHHHHHHHHhhhhhhHH
Confidence 22221 1234556777787765543
No 168
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.98 Score=50.33 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=106.1
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCcccHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHH
Q 007101 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (618)
Q Consensus 217 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 294 (618)
++.+..+|..+...|..++.. +........ ..+...|.+-+++.....+...+.+|..|....+.--..++.. .++
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence 445789999999999999974 333222221 1234455556666777888888888888866554211222222 334
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcC------ChHHHHHhhC----CCCHHHHHHHHHHHHHhhcCC
Q 007101 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG------AVRPLIEMLQ----SPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~------~~~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~ 364 (618)
-++-.+...+...++.+..+|..++. .....+.| .+..++..+. .....+.....-++..+....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 34444477788888888888888762 11111111 3334444333 333333333355566665432
Q ss_pred Ccc-hhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007101 365 HNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 365 ~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
.+. ..-.-.+.+..+..+|.+.+.+++..|+..+.-++..
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 221 1222234466667777889999999999999988744
No 169
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.44 Score=50.47 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
.+...|++++..+. .++.. + ...+..|--+++.... .+|..|.++|..++...|..-. -+-
T Consensus 260 mV~~EaArai~~l~~~~~r~---l--~pavs~Lq~flssp~~--------~lRfaAvRtLnkvAm~~P~~v~-----~cN 321 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRE---L--APAVSVLQLFLSSPKV--------ALRFAAVRTLNKVAMKHPQAVT-----VCN 321 (865)
T ss_pred HHHHHHHHHHhhccccCHhh---c--chHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence 78888999988888 33221 1 1256677777777665 8889999999999986664221 123
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (618)
.-|-.++.+.+..+...|...|..- +++.+.+.++.. +..++.=+.++..-+...|+++|+.. .+.. .
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~---fp~k-----~ 389 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKT--GTESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLK---FPRK-----H 389 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhh---ccHH-----H
Confidence 4555666666666665555555433 356666666654 45555555555555555555555554 3322 1
Q ss_pred cCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcch
Q 007101 290 AGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (618)
Q Consensus 290 ~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (618)
.+.+..|..+|.. +..+.++....++..+....++.+.. ++..|+..+.+... ..-+...|.-|....+..
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a- 461 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKA- 461 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccc--hHHHHHHHHHHhccCCCC-
Confidence 2345566666654 34456666666777666554544332 34556665554321 123444444444322111
Q ss_pred hhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 007101 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (618)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (618)
......+..+.+.+.-.+..+|..|..+|.++....+.. ...
T Consensus 462 -~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-------------------------------------~~s 503 (865)
T KOG1078|consen 462 -PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-------------------------------------LPS 503 (865)
T ss_pred -CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-------------------------------------ccc
Confidence 111122334444444456777888888888876332210 112
Q ss_pred hHHHHHHHHhhCCHhHHHHHHHHHHhhc
Q 007101 449 VLNHLLYLMRVAEKGVQRRVALALAHLC 476 (618)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (618)
+...+..++.+.+.++|..|..+|.++-
T Consensus 504 I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 504 ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3344566667777777777777777765
No 170
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.80 E-value=0.21 Score=45.20 Aligned_cols=146 Identities=10% Similarity=0.075 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHH
Q 007101 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTL 254 (618)
Q Consensus 181 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L 254 (618)
=..+++..|..++. +|+.+..+....+--.+..+|.. +.+-+|..+++++..+...+ .+....+...+++|..
T Consensus 95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 34456666666666 88889999988776666677753 34789999999999998743 3455667789999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh--------cCCH-HHHHHhhcCCChhHHHHHHHHHHHHhcCChhh
Q 007101 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--------AGAL-QPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~l-~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (618)
++.+..+++..+..|..++..+..++... ..+.. .-.+ ..+.++.+.++....+.+.++..+++ .++..
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL-~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs-dnpra 251 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGL-YYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS-DNPRA 251 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccH-HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCHHH
Confidence 99999999999999999998886654431 11111 0112 23345556677888888999988886 44555
Q ss_pred HHHH
Q 007101 326 KVHI 329 (618)
Q Consensus 326 ~~~l 329 (618)
+..+
T Consensus 252 r~aL 255 (293)
T KOG3036|consen 252 RAAL 255 (293)
T ss_pred HHHH
Confidence 5444
No 171
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.78 E-value=0.022 Score=52.33 Aligned_cols=178 Identities=14% Similarity=0.189 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChhhHHHHHhCC
Q 007101 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~g 157 (618)
...|+..+..++++|+.+..|+++.+.-.|-++|+..+... |+ ..+|..++..++.+. ++++.-..+...+
T Consensus 67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r------~~-E~LRLtsLGVIgaLvK~d~~evi~fLl~tE 139 (262)
T PF04078_consen 67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTR------PF-EYLRLTSLGVIGALVKTDDPEVISFLLQTE 139 (262)
T ss_dssp HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SH------HH-HHHHHHHHHHHHHHHTT--HHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhcccccc------cc-chhhHhHHHHHHHHHcCCcHHHHHHHHhhc
Confidence 56677778888999999999999999989999998766521 12 268899999999999 6788888888999
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhH------HH-HhcCChHHH-HHhhcCCCHHHHHHHHH
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RV-RMEGGIPPL-VELLEFTDTKVQRAAAG 229 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~------~~-~~~~~i~~L-~~ll~~~~~~v~~~a~~ 229 (618)
.+|..++.+...+. -.+..|..++..+..++..... .+ .-...+..+ ..+.+.+++.+.+...+
T Consensus 140 iiplcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIr 211 (262)
T PF04078_consen 140 IIPLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIR 211 (262)
T ss_dssp HHHHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHH
T ss_pred hHHHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHH
Confidence 99999999988755 5666788888877764332211 11 112233333 34556788999999999
Q ss_pred HHHHhhcCCcccHHHHHhcCCHHHHH------HhhcCCCHHHHHHHHHHHHHH
Q 007101 230 ALRTLAFKNDENKNQIVECNALPTLI------LMLRSEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~~~~~~~L~------~ll~~~~~~v~~~a~~~L~~l 276 (618)
+-..|+. ++..++.+... +|..+ .++ .+|+.++.+-...+.|+
T Consensus 212 CYlRLsd-nprar~aL~~~--LP~~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 212 CYLRLSD-NPRAREALRQC--LPDQLRDGTFSNIL-KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHTT-STTHHHHHHHH--S-GGGTSSTTTTGG-CS-HHHHHHHHHHHHHT
T ss_pred HHHHHcc-CHHHHHHHHHh--CcHHHhcHHHHHHH-hcCHHHHHHHHHHHHHh
Confidence 9999997 67776666542 22211 111 23667777666666665
No 172
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.59 Score=50.89 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=98.7
Q ss_pred HHHHHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh---cCchhhHHHHhcCCh
Q 007101 135 GSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGI 209 (618)
Q Consensus 135 ~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~i 209 (618)
+|...+..++ ..++. -.+.++.++.++.+....+.....+--...|+.++++|+. .....+.. .+.=.+
T Consensus 391 Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHH
Confidence 4555665555 22332 2356788888888554443333333566778888888874 22222222 222234
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+.+...++++.--+|..|||++..++. .+.+....-..++....+.|. +.+-.|+..|+-+|..+.++.+.....+.
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 666677788888999999999999994 222222233345777777777 77889999999999999877654422222
Q ss_pred h--cCCHHHHHHhhcCCC
Q 007101 289 A--AGALQPVIGLLSSCC 304 (618)
Q Consensus 289 ~--~~~l~~L~~ll~~~~ 304 (618)
. .+.+..|+.+.+.-+
T Consensus 543 ~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred hhhhHHHHHHHHHHHhcc
Confidence 1 223444555544433
No 173
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.025 Score=59.65 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=144.2
Q ss_pred CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHH-HhhhcCchhhHHHHhcCChHHHHHhhcCCCH-H
Q 007101 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT-NLAHENSSIKTRVRMEGGIPPLVELLEFTDT-K 222 (618)
Q Consensus 145 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~ 222 (618)
....-+...++.|+...|+.+...... ..+.....+|. .+....... ...++.+...+.+... .
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGL 557 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHH
Confidence 455667778889999999999988876 55555566665 333222111 2244555555433221 2
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh-cCCHHHHHHhhc
Q 007101 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 301 (618)
Q Consensus 223 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~ 301 (618)
-...++.++.||+..+...+..+...-.++.+-.++...++..+..+...+.||..+.--....+.+ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 2245778899999877888888888777777777888899999999999999998875555555555 456666666666
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 302 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
........+++.++..+++....++. ..........+..++.+.++.++........|+..
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 66666777777787777766666655 44445677888899999999999999988888654
No 174
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.73 E-value=0.34 Score=53.03 Aligned_cols=198 Identities=18% Similarity=0.222 Sum_probs=122.4
Q ss_pred HHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccc
Q 007101 99 WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (618)
Q Consensus 99 ~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~ 178 (618)
.+.+.|++..|+++|.+..... .+.+.....++.|...+.-+.+|+.+++.|+++.|+..|...-........
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~-------~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~ 184 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFS-------RGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQ 184 (802)
T ss_pred HhhcCCCHHHHHHHHHhhcccc-------CcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcccccc
Confidence 4556899999999997743211 112566678888888888899999999999999999988643221110011
Q ss_pred hHHHHHHHHHHHHhhhcCchhhH----HHHhc--------CChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCcccH
Q 007101 179 NSVIRRAADAITNLAHENSSIKT----RVRME--------GGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENK 242 (618)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~----~~~~~--------~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~ 242 (618)
.++.+..+.++-.+..+...... ..... ..+..+++.+.+ .++.+....+++|-.|+.++++..
T Consensus 185 ~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 185 AEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 15666666666555542221111 00111 125666666665 358899999999999999888777
Q ss_pred HHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCC------hhHHHHHHhcCCHHHHHHhhcCCCh
Q 007101 243 NQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSCCS 305 (618)
Q Consensus 243 ~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~ 305 (618)
+.+++. +...+++=+ .....--...+.+++.++.+- ...+..+++.|++...+..|...-+
T Consensus 265 ~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 265 DALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 777764 333333222 111111123366666665542 2457788889999888888765433
No 175
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.72 E-value=0.041 Score=51.01 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
.....|+.+|.-+|--+|+.+..+.....+..++.++.. ..+.++..++.+|..+.-+++.|...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 456678899999999999999999999999999999954 5689999999999999888999999999999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHhcC
Q 007101 259 RS--EDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 259 ~~--~~~~v~~~a~~~L~~l~~~ 279 (618)
++ .+.+++..++..|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 85 4678999999988776543
No 176
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.71 E-value=1.7 Score=49.83 Aligned_cols=128 Identities=13% Similarity=0.174 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHHHHHhcc-ChhhHH-HHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHH
Q 007101 75 ADRAAAKRATHVLAELAK-NEEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (618)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~-~~~~~~-~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~ 151 (618)
....++..|+++|..+.. ++.... ..++.| +-.-+.+... .||++|+..++... ..++.-.
T Consensus 828 ~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~Dssa------------sVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSA------------SVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred chHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchh------------HHHHHHHHHHhhhhhccHHHHH
Confidence 355689999999999987 554322 122222 2233445555 89999999999877 6666433
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh---cCCCHHHHHHHH
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL---EFTDTKVQRAAA 228 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~ 228 (618)
.. ...+..-..+... .+|..++.++..+|...|..... ...+++++ .+....++..++
T Consensus 892 qy-----Y~~i~erIlDtgv--------sVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 892 QY-----YDQIIERILDTGV--------SVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred HH-----HHHHHhhcCCCch--------hHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHH
Confidence 22 2333333333333 89999999999999988875432 23444444 334445888888
Q ss_pred HHHHHhhcC
Q 007101 229 GALRTLAFK 237 (618)
Q Consensus 229 ~~L~~l~~~ 237 (618)
.++.++...
T Consensus 953 etf~klWF~ 961 (1692)
T KOG1020|consen 953 ETFLKLWFT 961 (1692)
T ss_pred HHHHHHhcc
Confidence 888888764
No 177
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.71 E-value=0.34 Score=50.43 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
..++.|...|......-|..... ++..++.++++.+..||..|.+.|-.+|.++++....+ ...|+++|+
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHh
Confidence 78899999999999888877654 46899999999999999999999999998766665554 467999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc---CCChhHHHHHHHHHHH
Q 007101 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQ 317 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~ 317 (618)
.+++.....+-.+|..+...++.. .+..+..-+. ..+..+|+.++..|..
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 888777777777777775554432 2333443333 4456678877765543
No 178
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.61 E-value=0.094 Score=52.54 Aligned_cols=194 Identities=10% Similarity=0.138 Sum_probs=121.8
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHHHHhhcCCC
Q 007101 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSED 262 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~ 262 (618)
.|+.+|-.+....+..-..+...+|+..++..++..-...... .-...-... .++....... ...+....
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i~~~r 73 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSISYQR 73 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------ccccCHHH
Confidence 4667777777767777777888999999999885322111110 000000000 0011100100 00000011
Q ss_pred HHHHHHHHHHHHHHhc---CChhHHHHHHh-cCCHHHHHHhhcCC---ChhHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 007101 263 SAIHYEAVGVIGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~---~~~~~~~~~~~-~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~ 335 (618)
....+..++++..+.. ......+.+++ ..++..|..++.+. .+.+...|+.++..+...+|..-..+.+.|++
T Consensus 74 ~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~ 153 (379)
T PF06025_consen 74 QQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLI 153 (379)
T ss_pred HHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCCh
Confidence 2233333444444443 22233334445 44566777777665 45677888899999988888888999999999
Q ss_pred HHHHHhhC-C---CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC
Q 007101 336 RPLIEMLQ-S---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 386 (618)
Q Consensus 336 ~~L~~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~ 386 (618)
+.+++.+. . +..++....-.+++.||-+......+.+.+.++.+++++.++
T Consensus 154 ~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 154 DAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 99999887 3 577888888899999999988888999999999999988664
No 179
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.61 E-value=0.075 Score=45.13 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=96.9
Q ss_pred HHHHhcCChHHHHHhhcCCC------HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHH
Q 007101 201 TRVRMEGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGV 272 (618)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~ 272 (618)
..+...+|+..|+.+++++. .++...++.++..|-.+. ..........++..++..+... +..+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45777899999999998865 478888999999988743 3333455556777788777633 68899999999
Q ss_pred HHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh
Q 007101 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 273 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (618)
|-+++.+++.....+.++=-++.|+..|+..+.+++..+...+-.+....++.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999988876677777778999999999999999998888777766444443
No 180
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.36 Score=51.67 Aligned_cols=343 Identities=14% Similarity=0.174 Sum_probs=174.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH------hcC
Q 007101 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR------MEG 207 (618)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~------~~~ 207 (618)
-.+++.|..|+....+...++..|++..|+.+=+-. ....-...||+.+... ...-..++ -..
T Consensus 371 ~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s----------~~~~g~s~cly~~~~~-q~~mervc~~p~~v~~~ 439 (1516)
T KOG1832|consen 371 PDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS----------ETFYGLSSCLYTIGSL-QGIMERVCALPLVVIHQ 439 (1516)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch----------hhhhhHHHHHHHHhhh-hhHHHHHhhccHHHHHH
Confidence 345666777775667778888989988887654443 2222334455554442 22111121 123
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC--------CC-----------HHHHHH
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------ED-----------SAIHYE 268 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--------~~-----------~~v~~~ 268 (618)
.+..-+.++..+...-+.++...+. ++.......+.+-....++.|+.++++ .+ ...-..
T Consensus 440 vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~h 518 (1516)
T KOG1832|consen 440 VVKLAIELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFH 518 (1516)
T ss_pred HHHHHHHHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhh
Confidence 3444455665443333333222111 111112222333334556666665542 11 122334
Q ss_pred HHHHHHHHhc-----CChhHHHHHHhcCCHHHHHHhhcCC------ChhHHHHHHHHHHHHhcCChh-------hHHHHH
Q 007101 269 AVGVIGNLVH-----SSPNIKKEVLAAGALQPVIGLLSSC------CSESQREAALLLGQFAATDSD-------CKVHIV 330 (618)
Q Consensus 269 a~~~L~~l~~-----~~~~~~~~~~~~~~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~-------~~~~l~ 330 (618)
.|.+|+.... ..+..++.-++.+..+..+.-+... +.+..++.++-+..+....+. ....+.
T Consensus 519 tC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenfl 598 (1516)
T KOG1832|consen 519 TCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFL 598 (1516)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHH
Confidence 4445543321 2233344444455555555433322 122334444444444333332 223355
Q ss_pred hcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCCcchhhHhc--------CCHHHHHHhhc----CCChhH
Q 007101 331 QRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQAGIAHN--------GGLVPLLKLLD----SKNGSL 390 (618)
Q Consensus 331 ~~~~~~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~--------~~l~~L~~ll~----~~~~~v 390 (618)
..+++..++++..- +..++...|+..|+-+..-+..+..+... .|+..+++... ..++++
T Consensus 599 kls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei 678 (1516)
T KOG1832|consen 599 KLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEI 678 (1516)
T ss_pred HhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHH
Confidence 66778888887653 23456677777777776666666554332 13333333321 138999
Q ss_pred HHHHHHHHHHhhcCC-cchhHHHhhcccccccccchhhh-hHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhhCC-----H
Q 007101 391 QHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRLEEKI-HGRVLNHLLYLMRVAE-----K 462 (618)
Q Consensus 391 ~~~a~~~L~~l~~~~-~~~~~l~~~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~~L~~ll~~~~-----~ 462 (618)
+..|+.+|.|+...+ +++...+..=+-+.-..-.+.-+ .--..+.+.+.++...+ .+..+..|+.+|+-.. .
T Consensus 679 ~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD 758 (1516)
T KOG1832|consen 679 IQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTAD 758 (1516)
T ss_pred HHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHH
Confidence 999999999997665 55544332211000000000000 00112334444544443 6788899999998653 3
Q ss_pred hHHHHHHHHHHhhcCCCccccceecC
Q 007101 463 GVQRRVALALAHLCSPDDQRTIFIDG 488 (618)
Q Consensus 463 ~v~~~a~~~L~~l~~~~~~~~~~~~~ 488 (618)
.+|..||.+|.-|+.++..++++.+.
T Consensus 759 ~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 759 CIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred HHHHHHHHHHhccccCcHHHHHHHhC
Confidence 68889999999999999877665443
No 181
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.57 E-value=0.18 Score=44.93 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 007101 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~l 341 (618)
++.+|..++.+++.|+...+.... ..++.+...|.++++.+|+.|+.+|..|...+--. ....++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 478999999999999877665432 35788999999999999999999999997543211 112344778888
Q ss_pred hCCCCHHHHHHHHHHHHHhhcC
Q 007101 342 LQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~~ 363 (618)
+.++++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 182
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.54 Score=52.28 Aligned_cols=220 Identities=14% Similarity=0.123 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
.+|..+-+.|..++..+....... .-+..+.+.|.+....... ..+...+.+|..|....+.....+....+..
T Consensus 669 ~vQkK~yrlL~~l~~~~s~~~~~~--q~i~~I~n~L~ds~qs~~~----~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSGEGLVE--QRIDDIFNSLLDSFQSSSS----PAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHH--HHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 899999999999995544332222 1244444444443332211 6677778888887776663223333333334
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC------CHHHHHHhhcCC--CHHHHHHH--HHHHHHHhcCC
Q 007101 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN------ALPTLILMLRSE--DSAIHYEA--VGVIGNLVHSS 280 (618)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~------~~~~L~~ll~~~--~~~v~~~a--~~~L~~l~~~~ 280 (618)
.++.+ +..+...++.+..+|..++. .....+.| .+..++..+..+ ....+..+ +-++..+....
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 44444 77888899999999888872 01111111 344444444422 22222222 34444443332
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 007101 281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (618)
Q Consensus 281 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l 360 (618)
.+....-.-.+++..+..+|.+.+.++++.|...+..+....+..........+++.++.++++....++...-..|-.|
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 22222223344667777788889999999999999998877666555444455789999999888888888888888777
Q ss_pred hc
Q 007101 361 AQ 362 (618)
Q Consensus 361 ~~ 362 (618)
++
T Consensus 897 ir 898 (1176)
T KOG1248|consen 897 IR 898 (1176)
T ss_pred HH
Confidence 75
No 183
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.49 E-value=0.036 Score=43.23 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH--hcCChHHHHHhhC
Q 007101 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV--QRGAVRPLIEMLQ 343 (618)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~--~~~~~~~L~~lL~ 343 (618)
|..++.+|...+..-+...... -..++++++..+.+.++.+|..|+.+|.|++.. .+..++ -..+++.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 4556666666655444332222 234789999999999999999999999999843 233333 2567888999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 007101 344 SPDVQLREMSAFALGRL 360 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l 360 (618)
++++.|+..| ..|-++
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 9999998766 445444
No 184
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.40 E-value=0.031 Score=59.64 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=110.9
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhH
Q 007101 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (618)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (618)
..++|.+++.....+...+..-+.+|.+.....|. +.+.. ..++|.|++.|.-+|..++..+.+++..+...++..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 35788888888866667777778888888863333 33332 456788888899899999999999998886654443
Q ss_pred HHHHHhcCCHHHHHHhhcCCC---hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 007101 284 KKEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (618)
Q Consensus 284 ~~~~~~~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l 360 (618)
...-+ .-++|.+..+-.+.+ ..+|..|+.+|..++..-|..........++..|.+.|.++...+|..|..+=.+.
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 22211 235677777766654 46789999999999875565555556677899999999999999999998875553
No 185
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.40 E-value=0.18 Score=50.52 Aligned_cols=270 Identities=15% Similarity=0.164 Sum_probs=147.7
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHH
Q 007101 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (618)
|..++.-|....+ ..+|..++--|..-+.+++++..+...|..+.+.+.+.+.... .....+
T Consensus 23 v~ylld~l~~~~~-----------~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~ 84 (361)
T PF07814_consen 23 VEYLLDGLESSSS-----------SSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALA 84 (361)
T ss_pred HHHHHhhcccCCC-----------ccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHH
Confidence 5677777773322 1789999999999999999999999999999999999776552 344555
Q ss_pred HHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC--C-C--HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-
Q 007101 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--T-D--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR- 259 (618)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--~-~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~- 259 (618)
+.++..+...+...-..+...+.+..++.++.. . + ......-...+... . ...+..+...+.
T Consensus 85 ~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~-----------~-~~~~~~~~~~~~~ 152 (361)
T PF07814_consen 85 TAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKV-----------Q-QKSRSLCKELLSS 152 (361)
T ss_pred HHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHH-----------H-HHHHHHHHHHHhc
Confidence 555555444344444444455666676777761 1 0 00000000000000 0 011111111110
Q ss_pred --------CCCHHHHHHHHHHHHHHh--------------cCChhHHHHHHhcCCHHHHHHhhcC----CC-------h-
Q 007101 260 --------SEDSAIHYEAVGVIGNLV--------------HSSPNIKKEVLAAGALQPVIGLLSS----CC-------S- 305 (618)
Q Consensus 260 --------~~~~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~l~~L~~ll~~----~~-------~- 305 (618)
+.....+..|..++-.++ ...+..++.+...|++..++..+.+ .. .
T Consensus 153 ~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~ 232 (361)
T PF07814_consen 153 GSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPS 232 (361)
T ss_pred cccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccc
Confidence 122333445555555542 1123346677777889998888762 11 0
Q ss_pred ----hHHHHHHHHHHHHhcCChhhHHHHHhc--CChHHHHH-hhC---CCCHHHHHHHHHHHHHhhcCCCc-chhhHhcC
Q 007101 306 ----ESQREAALLLGQFAATDSDCKVHIVQR--GAVRPLIE-MLQ---SPDVQLREMSAFALGRLAQDMHN-QAGIAHNG 374 (618)
Q Consensus 306 ----~~~~~a~~~L~~l~~~~~~~~~~l~~~--~~~~~L~~-lL~---~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~ 374 (618)
.....+..+|-+.+..++.+...+... +.++.+.. ++. .........+++.+.|++.+++. +..+...+
T Consensus 233 ~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 233 LQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 122456778888876666666665543 23333332 222 23344466788888899876532 33333332
Q ss_pred CHHH---HHHh----hc-------CCChhHHHHHHHHHHHhhcCC
Q 007101 375 GLVP---LLKL----LD-------SKNGSLQHNAAFALYGLADNE 405 (618)
Q Consensus 375 ~l~~---L~~l----l~-------~~~~~v~~~a~~~L~~l~~~~ 405 (618)
.... +... .. ....+....++++|.||+...
T Consensus 313 l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 313 LGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred hccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence 2111 1111 11 123456778899999998654
No 186
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.33 E-value=0.41 Score=46.67 Aligned_cols=179 Identities=22% Similarity=0.204 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CcccHHHHHhcCCHHHHH
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI 255 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~ 255 (618)
..|..++..+.++....... ..+. ....+..+.+.++.+..+-+..|+.++.-++-. .......+.+ .+.+.|.
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 78888888888877644322 2121 123456777777777766677787877777653 2344555554 3678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHHhc---CChhHHHHHHhcCCHHHHH--HhhcCC----------ChhHHHHHHHHHHHH
Q 007101 256 LMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVI--GLLSSC----------CSESQREAALLLGQF 318 (618)
Q Consensus 256 ~ll~~~~--~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~--~ll~~~----------~~~~~~~a~~~L~~l 318 (618)
+.+.+.. ..+|..++.+|+-++. ..++.....+ ..+..+. ...... ++.+...|+.+.+-|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8888654 4566777777777644 2222212111 1223111 112211 234566666666666
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
...-+.....-.-...++.|..+|.+++..||.+|..+|.-|..
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 54444422222224468999999999999999999999887754
No 187
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.29 E-value=0.065 Score=57.37 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=123.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH--------HHHHh----cCCHHHHHHhhcCCChhHHHHHHHHHHHH
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--------KEVLA----AGALQPVIGLLSSCCSESQREAALLLGQF 318 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--------~~~~~----~~~l~~L~~ll~~~~~~~~~~a~~~L~~l 318 (618)
...++.+|++ +++-..+..++.-+..+++... +.+.. ..++|.+++.+.......+..-..+|+++
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 3445666654 3344455555555544433211 11111 24778888888866666777777888888
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCC---hhHHHHHH
Q 007101 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNAA 395 (618)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~---~~v~~~a~ 395 (618)
...-|.....-.-..++|.|++.|.-+|..+|..+..++.-+....+.-....-...++.++.+-.+.+ ..||..|+
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~AL 974 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDAL 974 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 765454222222256788999999999999999999998887654433322233345666777666655 56899999
Q ss_pred HHHHHhhcC-CcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHh
Q 007101 396 FALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 474 (618)
Q Consensus 396 ~~L~~l~~~-~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 474 (618)
.+|..|.+- +...-. .+...++..|...|+++..-+|.+|+.+=.+
T Consensus 975 qcL~aL~~~~P~~~l~---------------------------------~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 975 QCLNALTRRLPTKSLL---------------------------------SFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHhccCCCcccc---------------------------------cccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 999999873 322100 0244678889999999999999999887554
Q ss_pred h
Q 007101 475 L 475 (618)
Q Consensus 475 l 475 (618)
.
T Consensus 1022 W 1022 (1030)
T KOG1967|consen 1022 W 1022 (1030)
T ss_pred h
Confidence 3
No 188
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.26 E-value=0.065 Score=49.73 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
.....|++.|..++ -.|..+..+.....+..++++|...... .++..++.+|..+..+++.+.+.+-..+|+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~-------~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl 178 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPP-------AIQSACLDTLVCILLDSPENQRDFEELNGL 178 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCc-------hHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Confidence 45667889999999 9999999999999999999999554432 888999999999999999999999999999
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 007101 210 PPLVELLEF--TDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 210 ~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 236 (618)
..++.++++ .+.+++.++...|.-...
T Consensus 179 ~~v~~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 179 STVCSLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHHHHccccccHHHhHHHHHHHHHHHc
Confidence 999999987 457888888888877665
No 189
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.3 Score=51.27 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=94.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHh-hcCCChhHHHHHHHHHHHhhcCCcchhHHH
Q 007101 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFI 412 (618)
Q Consensus 334 ~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 412 (618)
.=+.+-+++.+.+|-+|..+..++.---.+.. ..+++..|+.. .++.+..||++|..+|+-++..+..
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----- 588 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----- 588 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence 33445557778888888877766553222211 12445666655 5678899999999999988754432
Q ss_pred hhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC-CHhHHHHHHHHHHhhcCCCccccceecCCch
Q 007101 413 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGL 491 (618)
Q Consensus 413 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l 491 (618)
.++..+.+|..+ ++-||..++.+|+-.|.+...+. ++
T Consensus 589 ------------------------------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai 626 (929)
T KOG2062|consen 589 ------------------------------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AI 626 (929)
T ss_pred ------------------------------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HH
Confidence 344566677665 99999999999999888776554 46
Q ss_pred HHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 492 ELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 492 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
..|-.+.++++.-||.-|+-++.-+.-.
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 7777888888888999998888876653
No 190
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.24 E-value=1.8 Score=45.29 Aligned_cols=281 Identities=17% Similarity=0.136 Sum_probs=140.9
Q ss_pred hHHHHHHHHHHHHHhccC-hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHH
Q 007101 76 DRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (618)
+..++..|+..|.....+ |+..+. ++..++.|+.+.+. .||..|.+.|..+| +++++...+
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~------------~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDV------------QIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSH------------HHHHHHHHHGGGG--T--T-HHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH------------HHHHHHHHhHHHHHHhHHHHHhHH
Confidence 445788899999998884 665544 47899999998887 99999999999999 777776655
Q ss_pred HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc---CCCHHHHHHHHHH
Q 007101 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE---FTDTKVQRAAAGA 230 (618)
Q Consensus 154 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~ 230 (618)
...|+.+|...+. .....+-.+|..+...++. +.+..+...+. +++..+|..++..
T Consensus 98 -----aDvL~QlL~tdd~--------~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkF 156 (556)
T PF05918_consen 98 -----ADVLVQLLQTDDP--------VELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKF 156 (556)
T ss_dssp -----HHHHHHHTT---H--------HHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHH
T ss_pred -----HHHHHHHHhcccH--------HHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHH
Confidence 4678888887665 5555566677777665543 23444555444 5778899998887
Q ss_pred HHHhhcC-CcccHH--HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhHHHHHHhcCCHHHHHHhh---
Q 007101 231 LRTLAFK-NDENKN--QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH----SSPNIKKEVLAAGALQPVIGLL--- 300 (618)
Q Consensus 231 L~~l~~~-~~~~~~--~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll--- 300 (618)
|..-... ..+... .=.+.-++..+-++|++-..+--.....+|..+-. .....++.+ +..+....
T Consensus 157 l~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld 231 (556)
T PF05918_consen 157 LREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLD 231 (556)
T ss_dssp HHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTT
T ss_pred HHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccC
Confidence 7544321 111111 11112234445566665444334444555665533 122222332 22333222
Q ss_pred ---cCCChhHHHHHHHHHHH----HhcCCh--hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhH
Q 007101 301 ---SSCCSESQREAALLLGQ----FAATDS--DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA 371 (618)
Q Consensus 301 ---~~~~~~~~~~a~~~L~~----l~~~~~--~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 371 (618)
...+.+.....+.++.. ++.... .... .+...++|.+-.+ .+..+...+.++..++.+.....
T Consensus 232 ~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~-y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d--- 303 (556)
T PF05918_consen 232 QPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN-YMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD--- 303 (556)
T ss_dssp S---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH-HHHHHTCCCTT---------HHHHHHHHHHHHHTT----T---
T ss_pred CCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH-HHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc---
Confidence 12233333333332222 221111 1111 2223344433333 45666677778888776543221
Q ss_pred hcCCHHHHHHhhc----CC------ChhHHHHHHHHHHHhhcCCcc
Q 007101 372 HNGGLVPLLKLLD----SK------NGSLQHNAAFALYGLADNEDN 407 (618)
Q Consensus 372 ~~~~l~~L~~ll~----~~------~~~v~~~a~~~L~~l~~~~~~ 407 (618)
....++.+.++|. .. +....+..+.++..|+....+
T Consensus 304 ~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 304 ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 1223445544442 11 234567778888888866554
No 191
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.19 E-value=0.01 Score=47.59 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=60.4
Q ss_pred ChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007101 208 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 208 ~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
.+..|+.+| .+.|+.+...||.=|..++...|..+..+-+.|+=..++.++.+++++|+.+|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467888888 44678888999999999999888888888888999999999999999999999999987753
No 192
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.18 E-value=0.35 Score=43.02 Aligned_cols=91 Identities=24% Similarity=0.262 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
.++..++-+++.|+...+..- ...++.+...|.++++.||..|+.+|.+|... +-.+ .+..++..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik---~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK---VKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee---ehhhhhHHHHHHHc
Confidence 789999999999998666432 34678999999999999999999999999862 1111 11223477888889
Q ss_pred CCCHHHHHHHHHHHHHHhcC
Q 007101 260 SEDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~ 279 (618)
+++++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999765
No 193
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.18 E-value=0.39 Score=46.82 Aligned_cols=180 Identities=19% Similarity=0.197 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHH--hCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-C-C-hhhHH
Q 007101 77 RAAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-K-PEHQQ 151 (618)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~-~-~~~~~ 151 (618)
...+..++..+.++....-....+. ..-.++.+.+.++.+.. +-+..|+++++-++ . . .+...
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHHhhhcCCCccHH
Confidence 4567888998888876321112121 12356677777877665 44667888888887 2 1 12223
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh---cCchhhHHHHhcCChHHHH--Hhhc---------
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLV--ELLE--------- 217 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~i~~L~--~ll~--------- 217 (618)
.+. ....|.|...+.+..... ..+..|+.+|+-++. .++..-... ...+..+. ...+
T Consensus 125 ei~-~~~~~~L~~~l~d~s~~~------~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 125 EIF-EELKPVLKRILTDSSASP------KARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred HHH-HHHHHHHHHHHhCCccch------HHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCccccc
Confidence 333 256788888888775432 566666666666554 222111100 01222111 1111
Q ss_pred -CCCHHHHHHHHHHHHHhhcCCccc-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007101 218 -FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 218 -~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
.+++.+...|+.+..-|...-+.. ..... ...++.|..+|.+.+.+||..|..+|.-|..
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 123568888887777776544442 22222 3458999999999999999999999988743
No 194
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.15 E-value=1 Score=41.76 Aligned_cols=223 Identities=11% Similarity=0.095 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHhc-CChhhHHHHH-hCCcHHHHHHHHhhccCCC----CcccchHHHHHHHHHHHHhhhcCchhhHHH
Q 007101 130 HEVEKGSAFALGLLA-VKPEHQQLIV-DNGALSHLVNLLKRHMDSN----CSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~-~~~~~~~~~~-~~g~l~~L~~lL~~~~~~~----~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 203 (618)
|+.|+.|+.-|.+-- ..++..-.+- ..|.+..|+.=+-+....- ......+-...|+..+..++. +|+.+..+
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence 477888777777665 3333322222 3355555554332221110 011111344566777777777 88899999
Q ss_pred HhcCChHHHHHhhcCCC-----HHHHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 007101 204 RMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 204 ~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (618)
....+.-.|..+++..+ +.+|..++++++.+... +++....+.+.+++|..++.++.+++-.+..|..++..+.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99988888888886533 67899999999999863 3455667788999999999999998888998998888886
Q ss_pred cCChhHHHHHHh--------cCCHHHH-HHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-----
Q 007101 278 HSSPNIKKEVLA--------AGALQPV-IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----- 343 (618)
Q Consensus 278 ~~~~~~~~~~~~--------~~~l~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~----- 343 (618)
.++... +.+.. ..++..+ ..+...+++..-+...++-..++ .++..+..+.. .+|. .|+
T Consensus 168 ~dd~GL-~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs-dnprar~aL~~--~LP~---~Lrd~~f~ 240 (262)
T PF04078_consen 168 LDDVGL-NYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS-DNPRAREALRQ--CLPD---QLRDGTFS 240 (262)
T ss_dssp HSHHHH-HHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT-TSTTHHHHHHH--HS-G---GGTSSTTT
T ss_pred cchhHH-HHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc-cCHHHHHHHHH--hCcH---HHhcHHHH
Confidence 553321 11111 1122222 33445667777888888888886 44555444432 1222 222
Q ss_pred ---CCCHHHHHHHHHHHHHh
Q 007101 344 ---SPDVQLREMSAFALGRL 360 (618)
Q Consensus 344 ---~~~~~v~~~a~~~L~~l 360 (618)
..|+.++.+-...+.|+
T Consensus 241 ~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 241 NILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TGGCS-HHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 23666776666655554
No 195
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.13 E-value=0.42 Score=46.62 Aligned_cols=157 Identities=19% Similarity=0.155 Sum_probs=103.3
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh-hhH
Q 007101 249 NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCK 326 (618)
Q Consensus 249 ~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~ 326 (618)
+.++.|+ ..+++.++.+|..++.+|+-.+.-+...... .++.+...+...+..++..|+.++..+..... ...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4454444 7888999999999999999998776543222 46778888877788899999999888863321 111
Q ss_pred HH-------HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhh-c---CCChhHHHHHH
Q 007101 327 VH-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-D---SKNGSLQHNAA 395 (618)
Q Consensus 327 ~~-------l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll-~---~~~~~v~~~a~ 395 (618)
.. .....++..+.+.+.+.+++++..++..++.|........ ....+..|+-+- + ..+.++++.-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1124567788888998999999999999999876543332 122233333222 2 23566777666
Q ss_pred HHHHHhhcCCcchhHHHh
Q 007101 396 FALYGLADNEDNVADFIR 413 (618)
Q Consensus 396 ~~L~~l~~~~~~~~~l~~ 413 (618)
..+-..+......+..+.
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~ 195 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLA 195 (298)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 677777765554444443
No 196
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.11 E-value=0.03 Score=39.59 Aligned_cols=50 Identities=20% Similarity=0.390 Sum_probs=40.7
Q ss_pred CCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHh
Q 007101 557 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDE 609 (618)
Q Consensus 557 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Y 609 (618)
+|..|.+.+.+.. .|..++.|+.+...+.. .|.+++++..+++.+++|++
T Consensus 9 Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 9 DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence 7789999988866 99999999976332222 79999999999999999997
No 197
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=2.9 Score=46.05 Aligned_cols=389 Identities=16% Similarity=0.127 Sum_probs=202.8
Q ss_pred hHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc---CChhhHH
Q 007101 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQ 151 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~ 151 (618)
+...|.+.+..+..+-. ++++-...-+.--+|.|+.-+..... .+|...+++|..-. +....++
T Consensus 480 nkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs------------slqvkiLkilEyAVtvvncvPeqE 547 (2799)
T KOG1788|consen 480 NKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS------------SLQVKILKILEYAVTVVNCVPEQE 547 (2799)
T ss_pred CcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh------------HHHHHHHHHHHHHHhhhccCcHHH
Confidence 33467778888888876 78888777788889999988877666 67777776664322 1111111
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC------C------
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------T------ 219 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~------~------ 219 (618)
+-.|+-+|+.+-.. .+....+.....|..-+...++.+++-|.+..|...++. +
T Consensus 548 -------LlSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgv 613 (2799)
T KOG1788|consen 548 -------LLSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGV 613 (2799)
T ss_pred -------HHHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhH
Confidence 33455556554331 444445555555555566677777777777777655542 0
Q ss_pred -------------------------CH-------------HHH---HHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh
Q 007101 220 -------------------------DT-------------KVQ---RAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (618)
Q Consensus 220 -------------------------~~-------------~v~---~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 258 (618)
++ ++. .....+|..+...+.+|...+.+..++..++.++
T Consensus 614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl 693 (2799)
T KOG1788|consen 614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL 693 (2799)
T ss_pred HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence 00 111 1224556666666778888888888887777766
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--------Ch----hHHHHHHHHHHHHhcCChhhH
Q 007101 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------CS----ESQREAALLLGQFAATDSDCK 326 (618)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--------~~----~~~~~a~~~L~~l~~~~~~~~ 326 (618)
- +.+-|...++++..|....+.+. ...-+-.++..|+++ +. ........+++.+...+...+
T Consensus 694 i--ndehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaq 767 (2799)
T KOG1788|consen 694 I--NDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQ 767 (2799)
T ss_pred e--chHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhe
Confidence 3 34456666666666654444311 111234566666552 11 223445567777765555666
Q ss_pred HHHHhcCChHHHHHhhCC----------CCHHHHHHHHHHHHH-----hhcCCCcchhhHhcCCHHHHHHhhcCCC---h
Q 007101 327 VHIVQRGAVRPLIEMLQS----------PDVQLREMSAFALGR-----LAQDMHNQAGIAHNGGLVPLLKLLDSKN---G 388 (618)
Q Consensus 327 ~~l~~~~~~~~L~~lL~~----------~~~~v~~~a~~~L~~-----l~~~~~~~~~l~~~~~l~~L~~ll~~~~---~ 388 (618)
..+.+.+++..|...|.. +|.-+-..-...|.. +|.+..|+..+...-.-+.+..++.... .
T Consensus 768 rvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcv 847 (2799)
T KOG1788|consen 768 RVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCV 847 (2799)
T ss_pred eehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhcccee
Confidence 777788888777776531 122222222222222 3445555554433333333444443221 1
Q ss_pred hHHHHHHHHHHHhh----cCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhH
Q 007101 389 SLQHNAAFALYGLA----DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV 464 (618)
Q Consensus 389 ~v~~~a~~~L~~l~----~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 464 (618)
+.-......|..++ ..+.-..+.....-+..+.+..+....-... ....-+.++..+++..++..+-...+.+
T Consensus 848 nler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq---fnpdk~~iynagavRvlirslLlnypK~ 924 (2799)
T KOG1788|consen 848 NLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ---FNPDKQKIYNAGAVRVLIRSLLLNYPKL 924 (2799)
T ss_pred cchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC---cCchHhhhcccchhHHHHHHHHhhChHH
Confidence 11111111121111 0000000000000111111100000000000 0001122345677788888888888889
Q ss_pred HHHHHHHHHhhcCCCc-cccceecCCchHHHHHHhc
Q 007101 465 QRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLG 499 (618)
Q Consensus 465 ~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~ 499 (618)
|..-+..+..+++..+ +...+...|.+..|+++..
T Consensus 925 qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 925 QLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 9998888888886554 5555555577777766654
No 198
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.07 E-value=0.021 Score=45.77 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=60.0
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
.+..|+.+|..+.++ .+...|+.=|+.++...|..+..+...|+-..+++++.++|++|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~-------~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDP-------TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHH-------HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCc-------ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 588999999555442 778889999999999999998888888999999999999999999999999987753
No 199
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.2 Score=53.42 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHH
Q 007101 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (618)
...++-.|+..|..+.+..+....+...+++...+..|++.++ -|-..|.+.+..|| ..|
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds------------yvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS------------YVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc------------eeeHHHHHHHHHHHHhcc-------
Confidence 4457889999999999866777778889999999999999888 78888999888888 333
Q ss_pred hCCcHHHHHH-HHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 007101 155 DNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (618)
Q Consensus 155 ~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (618)
...+|.+.. ..+..... .. +.+-..-.++.++...-.+....... -.+...+..+++++...|..++..+++
T Consensus 801 -e~il~dL~e~Y~s~k~k~-~~----d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKL-QT----DYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred -hhhHHHHHHHHHhcccCC-Cc----cceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 245777776 33333221 11 33333445555555433222222221 345677778888888899999999999
Q ss_pred hhcCCccc-HHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh
Q 007101 234 LAFKNDEN-KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 281 (618)
Q Consensus 234 l~~~~~~~-~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 281 (618)
++.-.... .+.+. .++..++.+.+ +++.-+|+.|+..+..+..+..
T Consensus 874 Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 98632211 11222 23455555555 6778999999999999876644
No 200
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=95.99 E-value=1.4 Score=43.08 Aligned_cols=173 Identities=12% Similarity=0.033 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHH
Q 007101 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (618)
Q Consensus 55 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~ 134 (618)
+......++++|.... ....+...+.++.-++++....+.+.....+..|+.+-.-+... ...|...+-.|..
T Consensus 43 r~eL~e~i~~Vle~~~-----p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e--~sl~~v~d~~vi~ 115 (532)
T KOG4464|consen 43 RKELGERIFEVLENGE-----PLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNE--NSLPTVADMHVIM 115 (532)
T ss_pred HHHHHHHHHHHHhcCC-----CchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhcccc--CCCCcccchHHHH
Confidence 6777788999988763 22345566777777777665555554444455565553322111 1223333447888
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHH-HhcCChHHH
Q 007101 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV-RMEGGIPPL 212 (618)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~i~~L 212 (618)
.+.++|.|+. .++..|...........+++.+.......... ++...=++.|.-+..-....|.++ ...+|++.+
T Consensus 116 EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~l 192 (532)
T KOG4464|consen 116 ESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAELLGLELL 192 (532)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHH
Confidence 9999999999 88999999999888888887776543321111 333344445555554445555554 457889999
Q ss_pred HHhhcCC---------C------HHHHHHHHHHHHHhhcC
Q 007101 213 VELLEFT---------D------TKVQRAAAGALRTLAFK 237 (618)
Q Consensus 213 ~~ll~~~---------~------~~v~~~a~~~L~~l~~~ 237 (618)
...+++. + ......++.++.|+..+
T Consensus 193 t~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 193 TNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred HHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 9888642 1 13445667777787754
No 201
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.97 E-value=0.6 Score=50.28 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=111.4
Q ss_pred CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHH
Q 007101 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (618)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (618)
.+++..|.++....+. ++......+|...+ .+|+.. ...+..+.|.++.+.....+++ .+
T Consensus 529 p~ild~L~qlas~~s~------------evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP------~V 589 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSD------------EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDP------QV 589 (1005)
T ss_pred hHHHHHHHHHcccccH------------HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCc------hH
Confidence 3455566666655555 88888899999888 777753 4455677888888776655543 55
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCC----HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh
Q 007101 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (618)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 257 (618)
...+-.++-.++.... +.... ....+|.++..+..++ ......++..|..+.+..+.......-.-++|.+.+.
T Consensus 590 ~~~~qd~f~el~q~~~-~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~ 667 (1005)
T KOG2274|consen 590 ASLAQDLFEELLQIAA-NYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKI 667 (1005)
T ss_pred HHHHHHHHHHHHHHHH-hhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhh
Confidence 5666666666665222 11111 2346899999998766 6777788888887877655444443334567888775
Q ss_pred h-cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCC
Q 007101 258 L-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (618)
Q Consensus 258 l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 292 (618)
. .+++.++...+..||+.+.....+.....-..++
T Consensus 668 tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g 703 (1005)
T KOG2274|consen 668 TLHSDDHETLQNATECLRALISVTLEQLLTWHDEPG 703 (1005)
T ss_pred eeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCC
Confidence 4 4678899999999999997776554333333333
No 202
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=4.6 Score=46.59 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=96.3
Q ss_pred CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHH
Q 007101 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (618)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (618)
.+.+..++..|..+.. .+|..|+++|..+. .+|.... ...+-..+-.-+.+... .+
T Consensus 815 D~yLk~Il~~l~e~~i------------alRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~Dssa--------sV 871 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAI------------ALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSA--------SV 871 (1692)
T ss_pred HHHHHHHHHHhcCchH------------HHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchh--------HH
Confidence 3457777888886655 99999999999999 5555321 11112222233334433 89
Q ss_pred HHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc--
Q 007101 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-- 259 (618)
Q Consensus 182 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-- 259 (618)
++.|+..++......++.-.... ..+.+-+.++...||..+++.++.+|...|..- . .+..+.+++.
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~-~-----i~~~cakmlrRv 940 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFS-K-----IVDMCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh-h-----HHHHHHHHHHHh
Confidence 99999999987766665544443 567777788899999999999999998555442 1 2334444444
Q ss_pred -CCCHHHHHHHHHHHHHHhc
Q 007101 260 -SEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 260 -~~~~~v~~~a~~~L~~l~~ 278 (618)
+++..++..+..++.++..
T Consensus 941 ~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhc
Confidence 5555588888888888854
No 203
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=95.79 E-value=1 Score=44.07 Aligned_cols=247 Identities=15% Similarity=0.131 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCChhHHHHHH-hcCCH
Q 007101 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGAL 293 (618)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l 293 (618)
+..+...++++|+|+..+++..+....+......+++.+.. ....+...-++.|.-++.-....+..++ ..+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 45788899999999999888888888888777777766542 1223444445555555544455555544 67899
Q ss_pred HHHHHhhcCC---Ch------------hHHHHHHHHHHHHhcCChhhHH--HHHh----cCChHHHHHhhC--CCCHHHH
Q 007101 294 QPVIGLLSSC---CS------------ESQREAALLLGQFAATDSDCKV--HIVQ----RGAVRPLIEMLQ--SPDVQLR 350 (618)
Q Consensus 294 ~~L~~ll~~~---~~------------~~~~~a~~~L~~l~~~~~~~~~--~l~~----~~~~~~L~~lL~--~~~~~v~ 350 (618)
+.+.+++.+. ++ ....+++.++.|++........ .-.. ..+...++..+. +...++-
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elh 269 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELH 269 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 9999998753 11 1234566777887644322111 1111 112222222221 2233333
Q ss_pred HHHHHHHHHh--------hcC--CCcchh-h--HhcCCHHHHHHhhcC---------CChhHHHHHHHHHHHhhcCCcch
Q 007101 351 EMSAFALGRL--------AQD--MHNQAG-I--AHNGGLVPLLKLLDS---------KNGSLQHNAAFALYGLADNEDNV 408 (618)
Q Consensus 351 ~~a~~~L~~l--------~~~--~~~~~~-l--~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~ 408 (618)
..+..-|.|. +.. .++..+ + .....+..+..+|+. ...+...-.+..|..+|+.....
T Consensus 270 shav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~ 349 (532)
T KOG4464|consen 270 SHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVM 349 (532)
T ss_pred hccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHH
Confidence 3333333332 111 111111 1 222234455555532 12345556778888889999999
Q ss_pred hHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccc
Q 007101 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 482 (618)
Q Consensus 409 ~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 482 (618)
..+.+..++|+|.+-..... ....+-..++.+|..++..++.-|+..|.-||...-.+
T Consensus 350 Rkylr~qVLPPLrDV~~RPE----------------vg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~r 407 (532)
T KOG4464|consen 350 RKYLRQQVLPPLRDVSQRPE----------------VGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVNR 407 (532)
T ss_pred HHHHHHhcCCchhhhhcCcc----------------hhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcchhh
Confidence 99999899998875221111 12334566788888888888888888888887654433
No 204
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.79 E-value=0.014 Score=34.52 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=26.2
Q ss_pred hHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 491 LELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 491 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
+|.+++++++++++||..|+.+|..++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999875
No 205
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.67 E-value=0.016 Score=34.33 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=25.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007101 335 VRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 335 ~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
+|.+++++.+++++||.+|+.+|++++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999753
No 206
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.60 E-value=0.25 Score=49.94 Aligned_cols=164 Identities=14% Similarity=0.152 Sum_probs=115.9
Q ss_pred HHHHHHHHhhccccchHHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHH
Q 007101 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 58 ~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
...++.+++.+. +...|..|+..|..++.++.....+++..++..|..++.++...... ++...++
T Consensus 84 ~a~~i~e~l~~~------~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~--------~~L~~~L 149 (713)
T KOG2999|consen 84 YAKRIMEILTEG------NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS--------ELLSTSL 149 (713)
T ss_pred HHHHHHHHHhCC------CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH--------HHHHHHH
Confidence 455677777665 44567779999999999999999999999999999999887652111 5666666
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc
Q 007101 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (618)
Q Consensus 138 ~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (618)
+++..+-...-..-..+...++.....+.+....+. .+...|+..|-++...+...+..+.+.--+..++..++
T Consensus 150 ~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~~~a------~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq 223 (713)
T KOG2999|consen 150 RAFSELMEHGVVSWESVSNDFVVSMASYVNAKREDA------NTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ 223 (713)
T ss_pred HHHHHHHhhceeeeeecccHHHHHHHHHHhhhhhcc------cchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH
Confidence 666655511111111122334455555553332221 67788999999999878878888888888999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccc
Q 007101 218 FTDTKVQRAAAGALRTLAFKNDEN 241 (618)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~~ 241 (618)
..+..++..|...+..+....++.
T Consensus 224 ~~n~~i~~~aial~nal~~~a~~~ 247 (713)
T KOG2999|consen 224 VSNQRIQTCAIALLNALFRKAPDD 247 (713)
T ss_pred hcchHHHHHHHHHHHHHHhhCChH
Confidence 999999988888777776544433
No 207
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.55 E-value=2.5 Score=46.60 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=115.8
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc----CCC----HHH
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKV 223 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v 223 (618)
.+.++|++..++.++....+....+ +.....+..|...|. -+.+|..+.+.|+++.|+..+. ... ..+
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i 187 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEI 187 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchH
Confidence 3457899999999998876532222 566666777766666 6888999999999999998774 333 566
Q ss_pred HHHHHHHHHHhhcCCcccHHHH------Hhc--------CCHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhHHH
Q 007101 224 QRAAAGALRTLAFKNDENKNQI------VEC--------NALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 224 ~~~a~~~L~~l~~~~~~~~~~~------~~~--------~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
-+..+.++..+... .+...+ ... .-+..|++.+.+ .++.+....+++|..|+.++++..+
T Consensus 188 ~E~LL~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 188 AEQLLEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred HHHHHHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 67777777666542 111111 111 125566666653 3688999999999999999888766
Q ss_pred HHHhcCCHHHHHHhhcCC--C---hhHHHHHHHHHHHHhcCC------hhhHHHHHhcCChHHHHHhhCCCC
Q 007101 286 EVLAAGALQPVIGLLSSC--C---SESQREAALLLGQFAATD------SDCKVHIVQRGAVRPLIEMLQSPD 346 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~--~---~~~~~~a~~~L~~l~~~~------~~~~~~l~~~~~~~~L~~lL~~~~ 346 (618)
.+++ .+-..+.-. + ..--...+.+++.++..- ...+..+++.|++...++.|...-
T Consensus 266 ~Lv~-----~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~ 332 (802)
T PF13764_consen 266 ALVE-----HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHF 332 (802)
T ss_pred HHHH-----HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 6543 233333211 0 111122344555554221 355677888899988888776543
No 208
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.42 Score=51.14 Aligned_cols=212 Identities=17% Similarity=0.146 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
-++-.++..|..+....+....+...+++...+..|++.+. -+.-.|+..+..||.-.+ ...+|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcevy~--------e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEVYP--------EDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHhcc--------hhhHH
Confidence 57888999999999655666777888999999999999876 566778888888887433 34567
Q ss_pred HHHHhh-cC---CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHH
Q 007101 211 PLVELL-EF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (618)
Q Consensus 211 ~L~~ll-~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (618)
.+.+.- +. ..++.+..+-.++.++...-.+......+ -++..++...++++...|..++..+++++.-.......
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 777633 22 11355555667777776533333222222 35666777788888888999999999997643221111
Q ss_pred HHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChhhHHHHH---hcCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 007101 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PDVQLREMSAFALGRL 360 (618)
Q Consensus 287 ~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~---~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l 360 (618)
.+ ..++..++.+.. ++..-+|+.|+..+..+-.+.......+. ..+....+....+. ++..++..++.++-.+
T Consensus 885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 11 113344444444 34567788888888887644332211111 12333444444444 4555666666665544
No 209
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.26 Score=54.51 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=123.1
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007101 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
..|.++.+++.+.. +.+|+++.+|.-+|+++. -+.+++.. .+|.|+..+.....+ -++.
T Consensus 920 f~piv~e~c~n~~~--------~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p-------~IRs 979 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--------FSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSP-------RIRS 979 (1251)
T ss_pred HHHHHHHHhcCCCc--------CCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCc-------eeee
Confidence 56777888866544 235799999999999999 66666543 479999999876653 7788
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH
Q 007101 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (618)
+++-.++.++..-|..-. ..-+.|.+.|.+.++.+|+.|..+|.+|.. .+.+--.|.+..+..++.++++
T Consensus 980 N~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred cchheccchhhhcccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCcH
Confidence 888899988875554322 345788999999999999999999999986 2334447899999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC
Q 007101 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 303 (618)
+++..|-.....|+..... + .+++|-++.-|.+.
T Consensus 1050 ~IsdlAk~FF~Els~k~n~----i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1050 EISDLAKSFFKELSSKGNT----I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHHHhhhcccc----h--hhhchHHHHhhccC
Confidence 9999998888888655321 1 23556666666554
No 210
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.38 E-value=0.14 Score=44.34 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=99.5
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 007101 251 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 251 ~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
++.++..+. ...+++|..+.-++..+- +..++. ...-+-..+-.++.....+....+..++..+....++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 445555444 467789999998888883 222222 22223445555565555667778888899988887877766
Q ss_pred HH-hcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhc-CCChh-HHHHHHHHHHHh
Q 007101 329 IV-QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYGL 401 (618)
Q Consensus 329 l~-~~~~~~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~a~~~L~~l 401 (618)
+. ..|+++.++.++. ..+..++..++.+|..=|.+. .+...+...+++.|.++.+ +++.. ++..|+-.|+.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 65 5788899999998 688889889888887766554 4444555567888888885 45555 788888777653
No 211
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.14 E-value=0.028 Score=43.93 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=48.5
Q ss_pred EEEEECCeEEehhHHHHh-cCCHHHHHhhcCC---CCCCCCCceecCCCCHHHHHHHHHHHhC-Ccccc
Q 007101 552 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFDEF-CAFNL 615 (618)
Q Consensus 552 v~~~~~~~~~~~h~~il~-~~s~~f~~~~~~~---~~e~~~~~i~~~~~~~~~~~~~l~~~Yt-~~~~~ 615 (618)
|.+.|+|..|.+-+..|. ....+|..||.++ ........+-+ |-+|+.|+.+|+|+.+ |.+..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~ 68 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPI 68 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB--
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCC
Confidence 578899999999999998 4456999999864 33445566666 6899999999999999 56554
No 212
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.10 E-value=0.77 Score=44.77 Aligned_cols=170 Identities=19% Similarity=0.204 Sum_probs=110.1
Q ss_pred CCHHHHH-HhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHH
Q 007101 104 GAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (618)
Q Consensus 104 g~v~~Lv-~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~ 181 (618)
+.+..|+ +.+++.+. .+|+.+.++|+-.+ -+.+.... .++.+...++..+. ++
T Consensus 26 ~ll~~lI~P~v~~~~~------------~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~--------~v 80 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDP------------AVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDE--------EV 80 (298)
T ss_pred HHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCH--------HH
Confidence 3444444 67777776 99999999999999 55543322 36777777755433 89
Q ss_pred HHHHHHHHHHhhhcCch-hhHH-------HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHH
Q 007101 182 IRRAADAITNLAHENSS-IKTR-------VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (618)
Q Consensus 182 ~~~a~~~L~~L~~~~~~-~~~~-------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 253 (618)
+..|+.++..+...... .-.. ......+..+...+.+.+++++..++..++.|...+.-.- ...++..
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~ 156 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSR 156 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHH
Confidence 99999999988753321 1111 1123456788888888999999999999999875322111 1223333
Q ss_pred HHHh-hc---CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC
Q 007101 254 LILM-LR---SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (618)
Q Consensus 254 L~~l-l~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 303 (618)
|+-+ .. .++..++..-..++-..+..++.+ +..+...+++.+..+....
T Consensus 157 Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 157 LLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 4333 22 234677777777777777776665 4555566777777766654
No 213
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.08 E-value=0.2 Score=52.48 Aligned_cols=228 Identities=15% Similarity=0.161 Sum_probs=148.9
Q ss_pred HHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHH
Q 007101 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 230 (618)
Q Consensus 151 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (618)
+.++...+++.|+..+.-.+... ++....+..-.-+.. .+ .+.+++|.|+.+.+..|..+|...+.-
T Consensus 287 e~i~~~kvlp~Ll~~~~~g~a~~------~~ltpl~k~~k~ld~-~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~ 353 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFGDAAS------DFLTPLFKLGKDLDE-EE------YQVRIIPVLLKLFKSPDRQIRLLLLQY 353 (690)
T ss_pred HHHHHHHHHHHHHHHhhccccch------hhhhHHHHhhhhccc-cc------cccchhhhHHHHhcCcchHHHHHHHHh
Confidence 44455555666666665544211 333333333222222 11 456789999999999999999877766
Q ss_pred HHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHH
Q 007101 231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (618)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 310 (618)
+-... +...+.+.+..+++.+..-+.+.++.+|..++.++..|+..-.. ..+....+..+..+-.+.+..+|..
T Consensus 354 i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~---~~Ln~Ellr~~ar~q~d~~~~irtn 427 (690)
T KOG1243|consen 354 IEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK---RNLNGELLRYLARLQPDEHGGIRTN 427 (690)
T ss_pred HHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---hhhcHHHHHHHHhhCccccCccccc
Confidence 66655 34455667778999999999999999999999999998754222 1333345566666656667778888
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhH
Q 007101 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 390 (618)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 390 (618)
..-+|+.++....... .+.-.+-.+..-++++-...|.++.++++......+.. -+...+++.+..+.-+++..+
T Consensus 428 tticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 428 TTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--EVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred ceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--hhhhhccccccccccCcccch
Confidence 8888888875432221 22223345555678877778888888887766543322 233456777777778888888
Q ss_pred HHHHHHHHHHhh
Q 007101 391 QHNAAFALYGLA 402 (618)
Q Consensus 391 ~~~a~~~L~~l~ 402 (618)
+..|..++...-
T Consensus 503 r~~a~~~i~~fl 514 (690)
T KOG1243|consen 503 RDTAEKAIRQFL 514 (690)
T ss_pred hhHHHHHHHHHH
Confidence 888887776654
No 214
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.06 E-value=6.5 Score=42.87 Aligned_cols=220 Identities=15% Similarity=0.069 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHhcCC-hhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCC
Q 007101 130 HEVEKGSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 208 (618)
|.+.-++.+++...+.. +.+.... ...+...++.+.....+ .++..|+.+++..|.... .. -...++
T Consensus 464 P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~-------~~ki~a~~~~~~~~~~~v--l~-~~~p~i 531 (1005)
T KOG2274|consen 464 PFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPP-------PVKISAVRAFCGYCKVKV--LL-SLQPMI 531 (1005)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCC-------chhHHHHHHHHhccCcee--cc-ccchHH
Confidence 35555888888877622 2211111 11233444444444332 566777777777773222 11 122466
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (618)
+..|.++....+.++......+|+..+.-+++. ....++.+.|.++.+.. +++|.+...+--++-.++.. ..+ ..
T Consensus 532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~-~g 608 (1005)
T KOG2274|consen 532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AAN-YG 608 (1005)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHh-hc
Confidence 778888888888889989999999999754444 34455667777776654 56777766666666666442 111 12
Q ss_pred HHhcCCHHHHHHhhcCCC----hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhh
Q 007101 287 VLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLA 361 (618)
Q Consensus 287 ~~~~~~l~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~l-L~~~~~~v~~~a~~~L~~l~ 361 (618)
-.....+|.+++.+..+. .....-++..|..+....+.--....-.-++|.+.++ +.++|.....++..+|..+.
T Consensus 609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 223347899999998775 3344445556665555444333333334467777775 45577788888899998887
Q ss_pred cCC
Q 007101 362 QDM 364 (618)
Q Consensus 362 ~~~ 364 (618)
...
T Consensus 689 s~~ 691 (1005)
T KOG2274|consen 689 SVT 691 (1005)
T ss_pred hcC
Confidence 653
No 215
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.06 E-value=3.2 Score=39.35 Aligned_cols=204 Identities=13% Similarity=0.121 Sum_probs=144.0
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHH----HHHhcCCHHHHHHhhcC-C-CHHHHHHHHHHHHHH
Q 007101 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN----QIVECNALPTLILMLRS-E-DSAIHYEAVGVIGNL 276 (618)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~~~~L~~ll~~-~-~~~v~~~a~~~L~~l 276 (618)
+...|.+..++..+...+.+.+..++.+..++-...-..+. .+... .+.+-.+++. . .+++...+...+...
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~--~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN--PEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC--HHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 55678889999999888888899999998888763322222 22211 2333333332 2 367777777777776
Q ss_pred hcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcC---ChHH-HHHhhCCCCHHHHHH
Q 007101 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG---AVRP-LIEMLQSPDVQLREM 352 (618)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~---~~~~-L~~lL~~~~~~v~~~ 352 (618)
.+. +...+.+....-+..+...++.+.-++...|..+...+.........++...+ ..+. .-.++.+.+.-++..
T Consensus 153 irh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred Hhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 554 45556677777888888888888888888888888777644444444444333 2233 555788899999999
Q ss_pred HHHHHHHhhcCCCcchhh----HhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchh
Q 007101 353 SAFALGRLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 409 (618)
Q Consensus 353 a~~~L~~l~~~~~~~~~l----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 409 (618)
+..+++.+..+.+|...+ .....+..+..++++++..+|..|....+-...++..-+
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q 292 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQ 292 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCc
Confidence 999999999887776543 334567889999999999999999999998887765433
No 216
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.04 E-value=0.15 Score=45.54 Aligned_cols=113 Identities=16% Similarity=0.101 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHHHH---------------hcCChHHHHHhhCC------CCHHHHHHHHHHHHHh
Q 007101 302 SCCSESQREAALLLGQFAATDSDCKVHIV---------------QRGAVRPLIEMLQS------PDVQLREMSAFALGRL 360 (618)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~l~---------------~~~~~~~L~~lL~~------~~~~v~~~a~~~L~~l 360 (618)
++.......++++|+|++..+..+...+. ....+..|+.++.. ....-..+.+..+.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 44455667788899999865444432221 12255666665543 2334556788899999
Q ss_pred hcCCCcchhhHhcC--C--HHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhh
Q 007101 361 AQDMHNQAGIAHNG--G--LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 414 (618)
Q Consensus 361 ~~~~~~~~~l~~~~--~--l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 414 (618)
++....|..+.... . +..|+..+.+.+..-|..++.+|.|+|...+....+...
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 99988888877653 2 566777778887777889999999999988887777653
No 217
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.88 E-value=0.3 Score=43.56 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhHHHHHHh----------------cCCHHHHHHhhcC------CChhHHHHHHHHHHH
Q 007101 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA----------------AGALQPVIGLLSS------CCSESQREAALLLGQ 317 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~ll~~------~~~~~~~~a~~~L~~ 317 (618)
+++......++..|+|++...... ..++. ...+..|+.++.. ....-....+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 445556677888888887764443 32221 1256677777755 233446678889999
Q ss_pred HhcCChhhHHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhc
Q 007101 318 FAATDSDCKVHIVQR--GA--VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 373 (618)
Q Consensus 318 l~~~~~~~~~~l~~~--~~--~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 373 (618)
++ ..+..+..+.+. +. +..|+.++.+.+..-|.-++.+|.|+|.+...+..+...
T Consensus 85 lS-~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 85 LS-QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred hc-CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 97 447778877753 34 778888888888778888999999999987777666553
No 218
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.074 Score=48.24 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=55.2
Q ss_pred EEEEECCeEEehhHHHHhcCCHHHHHhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007101 552 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.+.|||..|...+.-|.....||+.||..++. ...++.|-| |=+|.-|..+|.||--|.+.+++
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe 73 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPE 73 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCcc
Confidence 567899999999999999999999999998763 334456766 67899999999999999988764
No 219
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.80 E-value=0.22 Score=43.08 Aligned_cols=132 Identities=21% Similarity=0.182 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH-hcCCh
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~i 209 (618)
++|..+.-++..+- +..++... .-.-..+-.++.+... +-...++.++..+....++....+. ..|.+
T Consensus 20 ~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~--------d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 20 EVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEM--------DSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp CHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHC--------CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred hHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccc--------hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 89999999998885 22222221 1122333344444433 4556788888888887887766655 46777
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 007101 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSA-IHYEAVGVIGN 275 (618)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~-v~~~a~~~L~~ 275 (618)
+.+..++. ..+..++..++.+|..-|. ++.+...+...+++.|-.+.+ ++++. ++..|+-.|..
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 89 ESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 89999998 7888999999999998885 455555555568999999996 45555 67777766654
No 220
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.38 Score=48.91 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=85.5
Q ss_pred cCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChhh
Q 007101 248 CNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 248 ~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~ 325 (618)
.|++..++.. ..+.+.+|+++|+.+|+-+|..+.+ .++..+++|.. .+..+|...+.+|+-.|++....
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 4667777776 6788999999999999998877654 45556666654 47889988888998887665443
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCCh
Q 007101 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 388 (618)
Q Consensus 326 ~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 388 (618)
. .+..|-.++.+++.-||..|+-+++-+......+-.---.+++..+.+++.+++.
T Consensus 621 ~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 621 V-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred H-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 2 3556666778889999999999988876422221111112345567777766543
No 221
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=1.7 Score=45.71 Aligned_cols=127 Identities=16% Similarity=0.158 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
.+.+.+...+..+-..++..- + -.|.+..+++...+++..||..+|..|+.+.. .....+.-.-.++...+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~D--l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED--L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh--H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHh
Confidence 455555555555554333322 2 25677788888888999999999999999986 3333333333466777888888
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHH
Q 007101 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLL 315 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L 315 (618)
+..+.||..|+.+|+.+=.+..+- +..+...+..+++ ++++++|+.++..+
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 999999999999999994221110 1234566777776 45788888765543
No 222
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.64 E-value=4 Score=41.80 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=118.8
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHH
Q 007101 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (618)
...+.+++.+++. .-+..+.+-|..++.++.....++...++..|..++.+...-... ++...+
T Consensus 85 a~~i~e~l~~~~~------------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~----~~L~~~ 148 (713)
T KOG2999|consen 85 AKRIMEILTEGNN------------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS----ELLSTS 148 (713)
T ss_pred HHHHHHHHhCCCc------------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH----HHHHHH
Confidence 3456777877776 667779999999999999999999999999999999887652111 677777
Q ss_pred HHHHHHhhhcCchhhHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCH
Q 007101 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (618)
Q Consensus 186 ~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 263 (618)
+.++..+....-.. -......++.....+.+ ..+..+...|+..|-++...++.....+.+.--+..|+..++..+.
T Consensus 149 L~af~elmehgvvs-W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~ 227 (713)
T KOG2999|consen 149 LRAFSELMEHGVVS-WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ 227 (713)
T ss_pred HHHHHHHHhhceee-eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch
Confidence 77777766533211 11111223334444442 2456777889999999988777788888888889999999999999
Q ss_pred HHHHHHHHHHHHHhcCChh-HHHHHH
Q 007101 264 AIHYEAVGVIGNLVHSSPN-IKKEVL 288 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~-~~~~~~ 288 (618)
.++..|...+..+....++ .+..+.
T Consensus 228 ~i~~~aial~nal~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 228 RIQTCAIALLNALFRKAPDDKRFEMA 253 (713)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHH
Confidence 9999888888777654333 334443
No 223
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=2.7 Score=45.44 Aligned_cols=316 Identities=14% Similarity=0.135 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH-
Q 007101 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV- 154 (618)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~- 154 (618)
|......++..|+.++.+......|+..|+|..|+.+=.-+ +..-....+|..|......-+.++
T Consensus 366 d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s--------------~~~~g~s~cly~~~~~q~~mervc~ 431 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS--------------ETFYGLSSCLYTIGSLQGIMERVCA 431 (1516)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch--------------hhhhhHHHHHHHHhhhhhHHHHHhh
Confidence 34456788899999999888999999999998887654322 233344556666664433322222
Q ss_pred -----hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC--------CC-
Q 007101 155 -----DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--------TD- 220 (618)
Q Consensus 155 -----~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~- 220 (618)
-..++..-+.+|.-........ -.+...++..+.. .-..+-...+++.|+.+++. .+
T Consensus 432 ~p~~v~~~vv~~~~~l~~cs~~~~~~~--~~~ff~~~f~fra-------il~~fd~~d~l~~l~~~~~~~~~~~~~n~d~ 502 (1516)
T KOG1832|consen 432 LPLVVIHQVVKLAIELLDCSQDQARKN--SALFFAAAFVFRA-------ILDAFDAQDSLQKLLAILKDAASVTGANTDR 502 (1516)
T ss_pred ccHHHHHHHHHHHHHHHhcchhhccch--HHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHhccCcCc
Confidence 2234555556665544321100 0122222222221 22233334556666665542 11
Q ss_pred ----------HHHHHHHHHHHHHhh-----cCCcccHHHHHhcCCHHHHHHhhcCC------CHHHHHHHHHHHHHHhcC
Q 007101 221 ----------TKVQRAAAGALRTLA-----FKNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 221 ----------~~v~~~a~~~L~~l~-----~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~v~~~a~~~L~~l~~~ 279 (618)
...-...|.+|+.-- -..+..++.-+..+.....++-+..+ ..+..++.+|-+-.+...
T Consensus 503 ~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~ 582 (1516)
T KOG1832|consen 503 SLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRL 582 (1516)
T ss_pred cccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHh
Confidence 122234455554322 11222233334445555555433211 122333444443333222
Q ss_pred Ch-------hHHHHHHhcCCHHHHHHhhcCC-Ch-------hHHHHHHHHHHHHhcCChhhHHHHHhc--------CChH
Q 007101 280 SP-------NIKKEVLAAGALQPVIGLLSSC-CS-------ESQREAALLLGQFAATDSDCKVHIVQR--------GAVR 336 (618)
Q Consensus 280 ~~-------~~~~~~~~~~~l~~L~~ll~~~-~~-------~~~~~a~~~L~~l~~~~~~~~~~l~~~--------~~~~ 336 (618)
-+ ...+.+...+++..++.+...+ +| +....|+.+|.-+... |..+..+... .++.
T Consensus 583 gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGia 661 (1516)
T KOG1832|consen 583 GPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIA 661 (1516)
T ss_pred ChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceE
Confidence 22 1234556667788888887643 33 3445566666666543 4444444321 2344
Q ss_pred HHHHhhCC----CCHHHHHHHHHHHHHhhcCC-Ccch-----------------------------------hhHhcCCH
Q 007101 337 PLIEMLQS----PDVQLREMSAFALGRLAQDM-HNQA-----------------------------------GIAHNGGL 376 (618)
Q Consensus 337 ~L~~lL~~----~~~~v~~~a~~~L~~l~~~~-~~~~-----------------------------------~l~~~~~l 376 (618)
.++..-.. .+++++..|+.+|.|+...+ +++. .+...+||
T Consensus 662 IiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGI 741 (1516)
T KOG1832|consen 662 IILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGI 741 (1516)
T ss_pred EEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccH
Confidence 44443221 48999999999999987543 1110 12345788
Q ss_pred HHHHHhhcCCC-----hhHHHHHHHHHHHhhcCCcchhHHHhhc
Q 007101 377 VPLLKLLDSKN-----GSLQHNAAFALYGLADNEDNVADFIRVG 415 (618)
Q Consensus 377 ~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 415 (618)
..|+++++-+. ..+|..|+.+|..|++++.-++.+.+.-
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 99999997653 3589999999999999988877765543
No 224
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.45 E-value=0.41 Score=50.23 Aligned_cols=187 Identities=14% Similarity=0.188 Sum_probs=121.7
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh
Q 007101 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (618)
...++++.|++++...+..+|..-+.-+-..... .....++..++|.+..-+.+.++.+++..+..+..++. ..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~---kL 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP---KL 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh---hh
Confidence 3356889999999999988887666555555332 23556677789999999999999999999988888873 22
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC
Q 007101 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (618)
Q Consensus 326 ~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (618)
....++...+..+..+-.+.+..+|.+..-+|+.++.+..... ...-.+..+.+.+.++-..-|.++..+++......
T Consensus 401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYF 478 (690)
T ss_pred chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhccccc
Confidence 2223334445555555556777888888888888776432211 11222334666667766667777777776654332
Q ss_pred cchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhh
Q 007101 406 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (618)
Q Consensus 406 ~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (618)
+. ..+...+++.+..+.-+++..++..+-.++..+
T Consensus 479 ~~-----------------------------------~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 479 DQ-----------------------------------SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ch-----------------------------------hhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 22 112334666677777777777877777766655
No 225
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.44 E-value=3.5 Score=41.33 Aligned_cols=190 Identities=14% Similarity=0.097 Sum_probs=107.1
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcC-chhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 007101 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 159 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 236 (618)
.+.+..+|+..++.... +-+..|+.-|..+.... -..=.... ...+..+++.|.+ .+...+..|+++|..++.
T Consensus 285 ~~~v~~~l~~~~g~e~a----~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 285 SALVADLLKEISGSERA----SERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred hHHHHHHHHhccCccch----hHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 44555555554443221 55566666454444333 22111111 2345677788877 778889999999999997
Q ss_pred CCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH-HHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHH
Q 007101 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV-IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L 315 (618)
..+..-..-. .-++..+++.-.+..+++...|... +..++...+..+ +..+..++...+...-..++..+
T Consensus 360 ~Q~~~l~Dst-E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~ 430 (516)
T KOG2956|consen 360 NQPARLFDST-EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKML 430 (516)
T ss_pred hchHhhhchH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHH
Confidence 3222111111 1235556666667777666666654 445555555432 23344444444444444455455
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
..++..-..-....+-..+.|.+++.-.+....||..+..+|-.+..
T Consensus 431 Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 431 TKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 55552211111112235688889999999999999999999987753
No 226
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.42 E-value=2.8 Score=39.78 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=140.0
Q ss_pred HHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH-----HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 007101 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-----HIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~ 359 (618)
+.+..+|.+..++..+...+.+.+..++.+..|+-......+. ...+..++..|+.--.. .+++...+...+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 5566788999999999999999999999998888643222211 12223444444444111 46777777777777
Q ss_pred hhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC-cchhHHHhhcccccccccchhhhhHHHHHHHHH
Q 007101 360 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (618)
Q Consensus 360 l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~ 438 (618)
+.++..-...+....-...+...+..+.-++...|..+...+.... ....+++...
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n----------------------- 208 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN----------------------- 208 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC-----------------------
Confidence 7777666677777778888888888888888888888888775332 2222222211
Q ss_pred HHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccc----cceecCCchHHHHHHhcCCChhhhhhHHHHHH
Q 007101 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 514 (618)
Q Consensus 439 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 514 (618)
...-+....-.++++.+.-.++++...|+.+.-+..+. +.+.....+..+..+++++...+|.+|-....
T Consensus 209 ------~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFK 282 (342)
T KOG1566|consen 209 ------YDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFK 282 (342)
T ss_pred ------hhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence 11111222556788899999999999999987555433 23344467888999999999999999887776
Q ss_pred Hhhhh
Q 007101 515 KLANK 519 (618)
Q Consensus 515 ~L~~~ 519 (618)
-...+
T Consensus 283 vfvAn 287 (342)
T KOG1566|consen 283 VFVAN 287 (342)
T ss_pred HHhcC
Confidence 65554
No 227
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.34 Score=49.19 Aligned_cols=129 Identities=21% Similarity=0.227 Sum_probs=89.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHh-hcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcc
Q 007101 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (618)
Q Consensus 338 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 416 (618)
+-+++.+.++-+|.....++..--.+.. ..+++..++.. +++.+..|+++|..+|+-+|..+.+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3345566677777666655543222211 12445556655 5778899999999999998876654
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh-CCHhHHHHHHHHHHhhcCCCccccceecCCchHHHH
Q 007101 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 495 (618)
Q Consensus 417 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 495 (618)
.+...+++|.. .++-||..++.+|+-.|.+...+. ++..|-
T Consensus 586 --------------------------------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~ 627 (926)
T COG5116 586 --------------------------------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILE 627 (926)
T ss_pred --------------------------------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHH
Confidence 33445555655 488999999999998887665433 467888
Q ss_pred HHhcCCChhhhhhHHHHHHHhhhh
Q 007101 496 GLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 496 ~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
.++.+.+.-||..|+.++..+.-.
T Consensus 628 ~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 628 ALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred HHhhCcHHHHHHHHHHHHHHHHhh
Confidence 888899999999998888877654
No 228
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.05 E-value=0.16 Score=36.97 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcCCcchhHHHhhcc
Q 007101 350 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (618)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 416 (618)
.+.+.|++++++..+.....+.+.+.++.++++.. ++...+|-.|..+|.-++...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 46889999999987666666666788999999886 46788999999999999999888777776654
No 229
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.97 E-value=2.8 Score=45.82 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=111.5
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHH--HHHHhhcC-CChh
Q 007101 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV--PLLKLLDS-KNGS 389 (618)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~--~L~~ll~~-~~~~ 389 (618)
+|+++....+.....+++.+++..+...++. .+..++..+.+.+.|++...+.+..+.....+. .+..++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889988889999999999999999999986 677888999999999998665544332222222 33334443 3448
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHH--------HHhhhhHHH-HHHHHhhC
Q 007101 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE--------KIHGRVLNH-LLYLMRVA 460 (618)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~-L~~ll~~~ 460 (618)
....|+.+|..+..+.+.. ...+ .++|+......... ......+.+ +..++..+
T Consensus 574 rsY~~~siLa~ll~~~~~~---~~~~--------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT---TECV--------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC---cccc--------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 8889999999997553320 0000 01111111100000 011112222 44555554
Q ss_pred -CHhHHHHHHHHHHhhcCC-CccccceecCCchHHHHHHhcCC-ChhhhhhHH
Q 007101 461 -EKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGST-NPKQQLDGA 510 (618)
Q Consensus 461 -~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~ 510 (618)
.+..+..|++++.+++.. ++.+..+.+.++++.+...-... ..+++..+.
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAV 689 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHH
Confidence 678899999999999754 44666667888888887665432 333444433
No 230
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.94 E-value=0.33 Score=43.65 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=67.7
Q ss_pred CChhhHHHHHhCCcHHHHHHHHhhccCCCCc-ccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHH
Q 007101 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS-RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (618)
Q Consensus 145 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (618)
....+...+++.||+..|+++|......... ....+....++.||..+..........+...+++..++..+.+++..+
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 4456778888999999999999775432211 233477888999999999855555555556788999999999999999
Q ss_pred HHHHHHHHHHhh
Q 007101 224 QRAAAGALRTLA 235 (618)
Q Consensus 224 ~~~a~~~L~~l~ 235 (618)
+..++..|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 231
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=11 Score=40.24 Aligned_cols=346 Identities=13% Similarity=0.061 Sum_probs=175.9
Q ss_pred hhhhhhhhhhhccccCCCCCchhhhh-------------hHHHHHHHHHHhh-ccccchH-HhHHHHHHHHHHHHHhcc-
Q 007101 29 DEQQQMQQREISSSSAGTSSSDARQA-------------LLSEVSAQVNVLN-TTFSWLE-ADRAAAKRATHVLAELAK- 92 (618)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~l~~~l~-~~~~~~~-~~~~~~~~a~~~L~~l~~- 92 (618)
.|+++..+|-+..+......+...-. ....++=++.+|. +..+... .+......|++.++++..
T Consensus 367 nDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~ 446 (970)
T COG5656 367 NDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSF 446 (970)
T ss_pred cCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHH
Confidence 34555666766665444333322211 2223333444452 2222222 233345666777777765
Q ss_pred -C-hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhcc
Q 007101 93 -N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM 170 (618)
Q Consensus 93 -~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~ 170 (618)
+ +...+-+.+.=+++.+++.++++.. -++.+|+..+..+. .+..+..+-..+.....+.++++.
T Consensus 447 itk~sp~an~me~fiv~hv~P~f~s~yg------------fL~Srace~is~~e--eDfkd~~ill~aye~t~ncl~nn~ 512 (970)
T COG5656 447 ITKMSPAANVMEYFIVNHVIPAFRSNYG------------FLKSRACEFISTIE--EDFKDNGILLEAYENTHNCLKNNH 512 (970)
T ss_pred hccCchHHHHHHHHHHHHhhHhhcCccc------------chHHHHHHHHHHHH--HhcccchHHHHHHHHHHHHHhcCC
Confidence 2 3334445555567888888888877 78999999999885 344444444445666777777754
Q ss_pred CCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh---HHHHHhhcCCCHHHHHHHHHHHH-HhhcCCcccHHHHH
Q 007101 171 DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI---PPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIV 246 (618)
Q Consensus 171 ~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~ 246 (618)
- .++..|+-++.-+..++ .....+. .... +.|+.+-+.-+.++...+...+. ..+..-......++
T Consensus 513 l--------pv~ieAalAlq~fi~~~-q~h~k~s-ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa 582 (970)
T COG5656 513 L--------PVMIEAALALQFFIFNE-QSHEKFS-AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELA 582 (970)
T ss_pred c--------chhhhHHHHHHHHHhch-hhhHHHH-hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHH
Confidence 4 67778888888777644 3323232 2233 33333333333333333333322 22211111112222
Q ss_pred hcCCHHHHHH----hhcCC------CHHHHHHHHHHHHHHhc------CChhHHHHHHhcCCHHHHHHhhcCCChhHHHH
Q 007101 247 ECNALPTLIL----MLRSE------DSAIHYEAVGVIGNLVH------SSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310 (618)
Q Consensus 247 ~~~~~~~L~~----ll~~~------~~~v~~~a~~~L~~l~~------~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 310 (618)
. .+++.+++ ++..+ ..+-+..|.+.|..+.+ ..+..-+. ......|.+-=.+.+.-.+.-.+
T Consensus 583 ~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~slypvi~Filkn~i~dfy~E 660 (970)
T COG5656 583 G-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEVSLYPVISFILKNEISDFYQE 660 (970)
T ss_pred H-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhhHHHHHHH
Confidence 1 12333333 33322 12345666666665532 11211111 12334455555556666677788
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCCcchhhHhcCCH-----HHHHHhhc
Q 007101 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGL-----VPLLKLLD 384 (618)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~l-----~~L~~ll~ 384 (618)
|+..+-+.+-...+.. -+.-|+.+.+.+++.+... ...+.+.-++.|+.... +..+.+.+.. ......+.
T Consensus 661 a~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG--~~ef~~~~~y~~i~~eI~~~~l~ 736 (970)
T COG5656 661 ALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG--KTEFMDAGIYGSICSEISKLCLC 736 (970)
T ss_pred HHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC--ccccccccchhHHHHHHHHHHHc
Confidence 8888777653222211 1223566667777776653 66778888999987643 2223333332 22333444
Q ss_pred CCCh--hHHHHHHHHHHHhhcC
Q 007101 385 SKNG--SLQHNAAFALYGLADN 404 (618)
Q Consensus 385 ~~~~--~v~~~a~~~L~~l~~~ 404 (618)
+.+. +-...++.++..+..+
T Consensus 737 sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 737 SEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 4333 4456677777766644
No 232
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=9.2 Score=40.62 Aligned_cols=105 Identities=20% Similarity=0.138 Sum_probs=74.6
Q ss_pred CCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007101 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 103 ~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
.|.+..+++...+++. .||-.++.+|..+.+.....+..+..+....+..-+.+..+ .++
T Consensus 84 ~~~f~hlLRg~Eskdk------------~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep--------~VR 143 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDK------------KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP--------NVR 143 (892)
T ss_pred HHHHHHHHhcccCcch------------hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc--------hHH
Confidence 4556667777777766 99999999999999655545555666777777777777766 899
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHH
Q 007101 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALR 232 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~ 232 (618)
.+|+.+|..+=....+-. ..+...+..++++ ++++||+.|+..+.
T Consensus 144 iqAv~aLsrlQ~d~~dee-----~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 144 IQAVLALSRLQGDPKDEE-----CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 999999998874222111 2345677777765 77999997765443
No 233
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.75 E-value=1.6 Score=46.18 Aligned_cols=139 Identities=18% Similarity=0.151 Sum_probs=96.6
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhh-cCCChhHHHHHHHHHHHhhcCCcch
Q 007101 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNV 408 (618)
Q Consensus 330 ~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (618)
+...+++.|..-+++.+..+++.++..+..++..-+ -..+....++.+.++. ++.+..++.+++.++..+...-+.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~- 462 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK- 462 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH-
Confidence 345678888888999999999999999988876433 3344555666665543 556778888888888887721111
Q ss_pred hHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecC
Q 007101 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 488 (618)
Q Consensus 409 ~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 488 (618)
..++ ..+..+....+..++.+....+.+..++.........+...
T Consensus 463 -----~~v~------------------------------d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~ 507 (700)
T KOG2137|consen 463 -----AAVL------------------------------DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAE 507 (700)
T ss_pred -----HHhH------------------------------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehh
Confidence 1111 12344555566779999999999988887666554666778
Q ss_pred CchHHHHHHhcCCChhhh
Q 007101 489 GGLELLLGLLGSTNPKQQ 506 (618)
Q Consensus 489 ~~l~~L~~ll~~~~~~v~ 506 (618)
..+|.++.+...+.-...
T Consensus 508 ~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 508 NVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred hhhhhhhhhhhcccccHH
Confidence 899999998876654443
No 234
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=0.84 Score=50.78 Aligned_cols=163 Identities=16% Similarity=0.132 Sum_probs=114.7
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 236 (618)
..|.++...+.....++ ++++..|.-+|+.++.-+.. +. ...+|.++..+. ++++.+|.++.-+++-++.
T Consensus 920 f~piv~e~c~n~~~~sd----p~Lq~AAtLaL~klM~iSa~----fc-es~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSD----PELQAAATLALGKLMCISAE----FC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHhcCCCcCCC----HHHHHHHHHHHHHHhhhhHH----HH-HHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 34555555554433322 38888888899888764443 33 235688999887 6889999999999988886
Q ss_pred CCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007101 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (618)
..|...+. .-+.|...|.+.++.||..|+-.|.+|... ..+.-.|.++-+..++.+++.+++.-|-....
T Consensus 991 ~fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 991 RFPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred hcccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 44433322 345688889999999999999999999654 33445789999999999999988777766666
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCC
Q 007101 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (618)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~~~~L~~lL~~~ 345 (618)
.++..... + .+++|-++..|.++
T Consensus 1061 Els~k~n~----i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1061 ELSSKGNT----I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred Hhhhcccc----h--hhhchHHHHhhccC
Confidence 66533211 1 34677777777665
No 235
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.65 E-value=5.5 Score=40.03 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=93.0
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH-Hhhc
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR-TLAF 236 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~-~l~~ 236 (618)
++..++..|.+..++ ..+..|+++|..+|...+. +-.-...-++..+++.-.++.+++...|...+. .++.
T Consensus 330 iL~~l~EvL~d~~~~-------~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDE-------IIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred HHHHHHHHHccchhh-------HHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 466777888875443 7888999999999985543 211111224455566666666666666665544 4444
Q ss_pred CCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007101 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (618)
+.|..+ +..+..++...+...-..++..+..++..-+.-.-..+-.++.|.+++...+.+..+|+.+..+|.
T Consensus 402 ~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 402 HLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred hCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 333322 333444444466666677777888886654322122223578899999999999999999999887
Q ss_pred HHh
Q 007101 317 QFA 319 (618)
Q Consensus 317 ~l~ 319 (618)
.+.
T Consensus 474 amv 476 (516)
T KOG2956|consen 474 AMV 476 (516)
T ss_pred HHH
Confidence 774
No 236
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.54 E-value=0.49 Score=34.46 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 007101 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g 157 (618)
...|++++.++++++.....+.+.++++.++++....+. ..+|-.|..+|+-++...+-.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v-----------~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV-----------LSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc-----------cchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 457899999999998888888889999999999886655 2899999999999998888777766655
No 237
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.49 E-value=2.7 Score=46.35 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=125.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (618)
.+.+-.-+.+.++.-|..++..+...... +.........|.+..++.. +.+.+..+...++.+|..++...... ..-
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e-~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~ 332 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEE-AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRK 332 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhc-cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHH
Confidence 34455556678899999999998888862 2211111123444444443 34778889999999999997764433 222
Q ss_pred HhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-
Q 007101 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN- 366 (618)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~- 366 (618)
...+.++.++..+......++..+..++-.++...+- ....+.++..+++.++.++..+...+.........
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 2345788888888888888887777776666532221 33678899999999999999877777776653321
Q ss_pred -chhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007101 367 -QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 367 -~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
...-.-...++.++....+.+..||.+|..++..+.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 222223345777888888999999999999888775
No 238
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=93.43 E-value=0.2 Score=37.61 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=47.1
Q ss_pred EEEEE-CCeEEehhHHHHhcCCHHHHHhhcCCC--CCCCCCceecCCCCHHHHHHHHHHH-----hCCc-cccC
Q 007101 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGY--REKDARDIEIPNIRWEVFELMMRFD-----EFCA-FNLS 616 (618)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~--~e~~~~~i~~~~~~~~~~~~~l~~~-----Yt~~-~~~~ 616 (618)
|.++. +|..|-..|.+ +.-|+-.|+||.|+. .|....++.++++...+++.+.+|+ ||+. ..|+
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiP 91 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIP 91 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCC
Confidence 44444 44555555544 668999999999864 5666779999999999999999987 6665 4444
No 239
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=10 Score=38.52 Aligned_cols=142 Identities=16% Similarity=0.154 Sum_probs=86.8
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCC--
Q 007101 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA-- 292 (618)
Q Consensus 216 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-- 292 (618)
..+++..++..|+..|.+.+..-|+....... ..+..++.-| .+.+.+|.-+++.+|..+...-.+ .-+..+.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~~~l~ 342 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLESYLLN 342 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhhhchh
Confidence 34577899999999999999864444333332 3455555544 456789999999999888544221 1112222
Q ss_pred -HHHHHHhhcCCChhHHHHHHHHHHHHhcCChh-hHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 293 -LQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 293 -l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~l~~--~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
.-.+..+..+.+++.+..+...++.++..... .+..+.+ .+....++-.+.++++.+-. ||......|.
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~ 415 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcC
Confidence 33466677788888998888877777633222 2222221 23344555567788887754 4555555544
No 240
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.19 E-value=2.5 Score=37.82 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChhhHHHHHhCC
Q 007101 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~g 157 (618)
...|+..|.-++++|+.+..|.++.+--.|-+.|...+.. ++++ -+|..++..++.|. ++++.-..+....
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~------~~fE-yLRltsLGVIgaLvkNdsq~vi~fLltTe 189 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN------SKFE-YLRLTSLGVIGALVKNDSQYVIKFLLTTE 189 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC------Cccc-eeeehHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 5677888888899999999999988666677777654431 1111 57888999999999 6666777777889
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHh-------cCChHHHH-HhhcCCCHHHHHHHHH
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-------EGGIPPLV-ELLEFTDTKVQRAAAG 229 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-------~~~i~~L~-~ll~~~~~~v~~~a~~ 229 (618)
++|.+++++...+. -.+..++.++..+..++...+-.... ...+..++ ++...+...+...+++
T Consensus 190 ivPLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iR 261 (315)
T COG5209 190 IVPLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIR 261 (315)
T ss_pred HHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999988765 45556666766666544432221110 11122222 2333455667777777
Q ss_pred HHHHhhcCCcccHHH
Q 007101 230 ALRTLAFKNDENKNQ 244 (618)
Q Consensus 230 ~L~~l~~~~~~~~~~ 244 (618)
+-..++. ++..+..
T Consensus 262 cYlRLsd-~p~aR~l 275 (315)
T COG5209 262 CYLRLSD-KPHARAL 275 (315)
T ss_pred HheeecC-CHhHHHH
Confidence 7777775 4444443
No 241
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.17 E-value=7.3 Score=36.33 Aligned_cols=169 Identities=18% Similarity=0.115 Sum_probs=98.4
Q ss_pred HHhHHHHHHHHHHHHHhccCh-hhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHH
Q 007101 74 EADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (618)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~ 151 (618)
..++..+...+..|..++.+. ..... ++..|..+...+.. +.+--+.+.+..+. .++..-
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~------------~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL------------ELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch------------hHHHHHHHHHHHHHHhCchHH-
Confidence 346778999999999999965 33333 25666666666665 55556677777776 333221
Q ss_pred HHHhCCcHHHHHHHH--hhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh-cCCCHHHHHHHH
Q 007101 152 LIVDNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAA 228 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~ 228 (618)
+.+..++..+ +...........++.......++..+|...|+.- ...++.+..++ ++.++.++..++
T Consensus 74 -----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alal 143 (234)
T PF12530_consen 74 -----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALAL 143 (234)
T ss_pred -----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHH
Confidence 3344333331 1011111111223555555678889998777621 23567888888 788889999999
Q ss_pred HHHHHhhcCCcccHHHHHh-cCCHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 007101 229 GALRTLAFKNDENKNQIVE-CNALPTLILMLR-SEDSAIHYEAVGVIGNL 276 (618)
Q Consensus 229 ~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l 276 (618)
.+|..++.. .+++ ......+.+-+. +..+.+....+..+..+
T Consensus 144 e~l~~Lc~~------~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 144 EALAPLCEA------EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred HHHHHHHHH------hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHh
Confidence 999999941 1221 122344444443 34556655544444444
No 242
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.15 E-value=6.1 Score=42.07 Aligned_cols=213 Identities=14% Similarity=0.059 Sum_probs=124.0
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCH-HHHHHHHHH
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGA 230 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~ 230 (618)
.+....++|.|+..|.... .+-..+..+..+....+.. ......++.|...++.+++ .+...-+.-
T Consensus 307 rv~~~kiLP~L~~el~n~~----------~vp~~LP~v~~i~~~~s~~---~~~~~~~p~l~pi~~~~~~~~~~l~i~e~ 373 (700)
T KOG2137|consen 307 RVLFQKILPTLVAELVNTK----------MVPIVLPLVLLIAEGLSQN---EFGPKMLPALKPIYSASDPKQALLFILEN 373 (700)
T ss_pred HHHHHhhhhHHHHHhcccc----------ccccccchhhhhhhccchh---hhhhhhhHHHHHHhccCCcccchhhHHhh
Confidence 3444566777777774432 2222333444444322211 2223456677776664332 222222222
Q ss_pred HHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh-cCCChhHHH
Q 007101 231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQR 309 (618)
Q Consensus 231 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~ 309 (618)
+-.|.. .....-....+++.|...+++.+..++..++..+..++..-+ -..+...++|.+.++. .+.+..++.
T Consensus 374 mdlL~~---Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkv 447 (700)
T KOG2137|consen 374 MDLLKE---KTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKV 447 (700)
T ss_pred HHHHHh---hCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHH
Confidence 222221 111222334577888888889999999999999999865533 3344555778887774 345677888
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCC
Q 007101 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387 (618)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~ 387 (618)
.++.++..+. ... ....-...+..+....+..++.+......+..++......+..+.....+|.++.+...+.
T Consensus 448 n~L~c~~~l~---q~l-D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 448 NVLPCLAGLI---QRL-DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHHHHH---HHH-HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 8999988886 111 1111122344455555668999998888888888776655555556667777777665544
No 243
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.01 E-value=2.3 Score=46.87 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=128.1
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCcchhh
Q 007101 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGI 370 (618)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~l 370 (618)
+-+.+-.-+.+.+|.-+.+|+..+........ ........+.+-.++.. +.+.+..+...++..|..++..-.....=
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34556666778899999999988888764433 11111123344444443 34678888888888898888643332222
Q ss_pred HhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhH
Q 007101 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (618)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (618)
...+..+.|+..+......++..+..++-.++..-. -....
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---------------------------------------l~~~~ 373 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP---------------------------------------LSKMS 373 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---------------------------------------HHHHH
Confidence 334567778888888888888887777776654111 11355
Q ss_pred HHHHHHHhhCCHhHHHHHHHHHHhhcCCCc--cccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 451 NHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
+.+...+++.+|.++..+...+.......+ ....-.-.+.++.++....+.+.+||.+|..++..+.+..
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 668888999999999998888877653333 2222223467888999999999999999999998877654
No 244
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.64 E-value=15 Score=38.45 Aligned_cols=260 Identities=13% Similarity=0.107 Sum_probs=135.2
Q ss_pred HHhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHH
Q 007101 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (618)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (618)
+...+++..+...|..+.......-...+ ..+...+..+..+ +.-..-+.+|..|+ ++.+. .
T Consensus 40 ~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~-----------~d~~~~l~aL~~LT~~Grdi--~ 102 (464)
T PF11864_consen 40 NQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND-----------DDFDLRLEALIALTDNGRDI--D 102 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc-----------hhHHHHHHHHHHHHcCCcCc--h
Confidence 44566788888888888774333111111 1233344433321 33345556666667 44443 2
Q ss_pred HHhCCcHHHHHHHHhhccC---------------CCCc----ccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHH
Q 007101 153 IVDNGALSHLVNLLKRHMD---------------SNCS----RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (618)
Q Consensus 153 ~~~~g~l~~L~~lL~~~~~---------------~~~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~ 213 (618)
..+.+..+.|...|..... +... ..........+..+.|+.+.+...-..-.-.+.+..++
T Consensus 103 ~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~ 182 (464)
T PF11864_consen 103 FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQIC 182 (464)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 3566777777776653320 0000 00113344556666666654443322222245566666
Q ss_pred HhhcCC-CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCC
Q 007101 214 ELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (618)
Q Consensus 214 ~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 292 (618)
.++..+ ++.....++.++-.+.....-..+.+. .++..|...... .+....+..++.||+.+.... ..
T Consensus 183 ~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~ 251 (464)
T PF11864_consen 183 TICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SA 251 (464)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HH
Confidence 666543 344446666666666542222222221 123344444322 267778888999997653321 14
Q ss_pred HHHHHHhhcCC------ChhHHHHHHHHHHHHhcCChhhHHHHHh-c--CChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 007101 293 LQPVIGLLSSC------CSESQREAALLLGQFAATDSDCKVHIVQ-R--GAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (618)
Q Consensus 293 l~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~--~~~~~L~~lL~~~~~~v~~~a~~~L~~l~ 361 (618)
+..|..+|.+. +..+.+.|...+..+..+....+..-+. . -+++.+...++.+++.+-......+.++.
T Consensus 252 i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 252 IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 56677777322 3345567777777776554222211111 1 26777888888777766666666666665
No 245
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=92.12 E-value=0.49 Score=37.69 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=42.9
Q ss_pred CCeEEehhHHHHhcCCHHHHHhhcCCCCCC-CCCceecCCCCHHHHHHHHHHHhC
Q 007101 557 EGRRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIPNIRWEVFELMMRFDEF 610 (618)
Q Consensus 557 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~-~~~~i~~~~~~~~~~~~~l~~~Yt 610 (618)
+|..|.+.+.+.. .|..++.|+.+...+. ....|.+++++..+++.+++|++.
T Consensus 10 Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 10 DGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH 63 (104)
T ss_pred CCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 6789999998764 9999999997632221 225899999999999999999985
No 246
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.07 E-value=29 Score=40.54 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=91.0
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHH
Q 007101 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 411 (618)
Q Consensus 332 ~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l 411 (618)
.+++|.|...|.+.+..+|..|...++.|......+..--.......++.-+.+.+.+||..++....++-.+.+....-
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 46899999999999999999999999999876544433112234556777788889999999998888775443221110
Q ss_pred HhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCch
Q 007101 412 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 491 (618)
Q Consensus 412 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l 491 (618)
. +.+ +.--.++.|+.++.....++..+.- ......+.-. .+
T Consensus 338 ~-----------------------------------~~~--~~l~~~~~D~~~rir~~v~i~~~~v-~~~~l~~~~~-ll 378 (1266)
T KOG1525|consen 338 S-----------------------------------TIL--LALRERDLDEDVRVRTQVVIVACDV-MKFKLVYIPL-LL 378 (1266)
T ss_pred H-----------------------------------HHH--HHHHhhcCChhhhheeeEEEEEeeh-hHhhhhhhHH-HH
Confidence 0 000 1111233455555443333222211 1111111112 44
Q ss_pred HHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 492 ELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 492 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
...-+.+.+....||..|...|..+.++
T Consensus 379 ~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 379 KLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5555666778889999999999888886
No 247
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.84 E-value=0.69 Score=35.66 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (618)
...+..+.++.+.+|..++..|..+..... ....-..+++..+...++++++-|-..|+.+|..|+...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 455666778888999999999999997544 22222346678888899999999999999999999877664
No 248
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.83 E-value=0.17 Score=45.86 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC-CHhHHHH
Q 007101 389 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRR 467 (618)
Q Consensus 389 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~ 467 (618)
.-|..|+.+|+.|+..+.|...+...+-...+ ..++..|+.++... ++..|+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRl--------------------------E~l~~~L~r~l~~~e~~v~REf 192 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRL--------------------------ERLFHTLVRLLGMREDQVCREF 192 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHH--------------------------HHHHHHHHHHhccccchhHHHH
Confidence 45889999999999999888777665543332 13566677888775 7889999
Q ss_pred HHHHHHhhcCCCc--cccceecCCchHHHHHHhcCCC
Q 007101 468 VALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTN 502 (618)
Q Consensus 468 a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~ 502 (618)
|+..|.+++.++. .+.+-.+.+.+..|+.++++..
T Consensus 193 AvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 193 AVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 9999999998776 5566678899999999998654
No 249
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.72 E-value=11 Score=35.08 Aligned_cols=137 Identities=23% Similarity=0.205 Sum_probs=89.8
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 210 PPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 210 ~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+.++. .-+..+++.+...+.+|..++.++..+ ..-+++.|..+.+.+..+.+..+.+.+..+...++..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~-----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVC-----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccc-----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 445678999999999999999743122 12235667777777777777778888888765544321
Q ss_pred hcCCHHHHHHh-----h---c--CCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHH
Q 007101 289 AAGALQPVIGL-----L---S--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 357 (618)
Q Consensus 289 ~~~~l~~L~~l-----l---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL-~~~~~~v~~~a~~~L 357 (618)
+.+..++.. . . +..++.....+..+..++...++... .+++.+..+| ++.++.++..+..+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 233333333 0 1 11334445556678888877776332 3578888888 788899999999999
Q ss_pred HHhhc
Q 007101 358 GRLAQ 362 (618)
Q Consensus 358 ~~l~~ 362 (618)
..+|.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99994
No 250
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=1.6 Score=41.30 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=93.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~ 330 (618)
+...+..|.+.+.+....++..+..|+...++.....+. .++..+++-+.+....+-+.|+.+++.+.+.-......
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445566677778888888888888887765544333332 25556677777788889999999999997543333222
Q ss_pred hcCChHHHHH-hhC---CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHh
Q 007101 331 QRGAVRPLIE-MLQ---SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (618)
Q Consensus 331 ~~~~~~~L~~-lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (618)
.+..++. ++. .++.-+++.|-.+|..+..+-..+. .++.|+..+.+.++.++..++....+.
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2233332 332 3567799999999999987654432 356677788888898888877666554
No 251
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=91.52 E-value=0.069 Score=50.96 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=45.8
Q ss_pred ccEEEEE-CCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCC
Q 007101 550 SDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFC 611 (618)
Q Consensus 550 ~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 611 (618)
.|+.|.. +|..|.|||..|+++|.+|..-+..-| ....+|.-..+-+.+|..+++|+|-.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLN 210 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHh
Confidence 4777776 567788999999999998866554322 24456665677889999999999965
No 252
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=91.48 E-value=16 Score=36.24 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=116.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhHHHHHHhc-C-CHHHHHHhhcCCC-------------hhHHHHHHH-
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA-G-ALQPVIGLLSSCC-------------SESQREAAL- 313 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~ll~~~~-------------~~~~~~a~~- 313 (618)
++.+.+.|......+...+++.|..++. ........+... + -.+.+..++.... +.+|.....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888888888888999999999988 655666666653 2 3456666663221 166666665
Q ss_pred HHHHHhcCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHH-hhcCCC----cchhhHhcCCHHHHHHhhcCCC
Q 007101 314 LLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMH----NQAGIAHNGGLVPLLKLLDSKN 387 (618)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~-~~~~~~L~~lL~~~~~~v~~~a~~~L~~-l~~~~~----~~~~l~~~~~l~~L~~ll~~~~ 387 (618)
+|..+...++..+..++. .+.+..+..-|..+++++....+.+|.. +..+.. .+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 455555556666666654 5678888888888889999998988886 444332 2334666677888888887776
Q ss_pred h----hHHHHHHHHHHHhhcCCcchhHHHhhc
Q 007101 388 G----SLQHNAAFALYGLADNEDNVADFIRVG 415 (618)
Q Consensus 388 ~----~v~~~a~~~L~~l~~~~~~~~~l~~~~ 415 (618)
. .+...+-..|..+|.++...-.+-+.|
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~ 249 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVCFPDNG 249 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcccccCCCC
Confidence 6 899999999999998877644444433
No 253
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.42 E-value=20 Score=37.34 Aligned_cols=114 Identities=20% Similarity=0.250 Sum_probs=76.9
Q ss_pred ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCC
Q 007101 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS 172 (618)
Q Consensus 93 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~ 172 (618)
+|+..+ ++ .|.+..+++.+.+++. .||..++++|+.+.+...--+..+..|.+..|..-+-+...
T Consensus 82 dpeg~~-~V-~~~~~h~lRg~eskdk------------~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~- 146 (885)
T COG5218 82 DPEGEE-LV-AGTFYHLLRGTESKDK------------KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK- 146 (885)
T ss_pred ChhhhH-HH-HHHHHHHHhcccCcch------------hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH-
Confidence 555422 22 5667778888877777 99999999999999554444556667777777777766655
Q ss_pred CCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 007101 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 236 (618)
.++..|+.+|+.+-.....-...+ ...+...++. ++.+||+.|+ .|+.-
T Consensus 147 -------~VR~eAv~~L~~~Qe~~~neen~~-----~n~l~~~vqnDPS~EVRr~al---lni~v 196 (885)
T COG5218 147 -------AVRREAVKVLCYYQEMELNEENRI-----VNLLKDIVQNDPSDEVRRLAL---LNISV 196 (885)
T ss_pred -------HHHHHHHHHHHHHHhccCChHHHH-----HHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence 899999999988765322222222 2356666654 6688988654 45554
No 254
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.80 E-value=20 Score=36.11 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=78.8
Q ss_pred HHHHhcCCHHHHHHhhcCCChh-HHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh-h--CCCCHHHHHHHHHHHHHh
Q 007101 285 KEVLAAGALQPVIGLLSSCCSE-SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-L--QSPDVQLREMSAFALGRL 360 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~l-L--~~~~~~v~~~a~~~L~~l 360 (618)
.++.+.+-...+-.-+...+.. .+..|+..+..++...+.....++ .+.+..++.- - ...++.-+..|+..++.+
T Consensus 204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~al 282 (370)
T PF08506_consen 204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGAL 282 (370)
T ss_dssp HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHH
Confidence 4455555555666555544444 456677788888743222211111 1122222221 1 235778889999999999
Q ss_pred hcCCCcc-h------------hhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhh
Q 007101 361 AQDMHNQ-A------------GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 427 (618)
Q Consensus 361 ~~~~~~~-~------------~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~ 427 (618)
+...... . .+....+++.|. --.+..+-++..|++.+..+...-. ..
T Consensus 283 a~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~------------------ 342 (370)
T PF08506_consen 283 ASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KE------------------ 342 (370)
T ss_dssp HBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HH------------------
T ss_pred HhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HH------------------
Confidence 8644221 1 122222233232 1113456677777777776643211 11
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHH
Q 007101 428 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (618)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 472 (618)
.-.++++.++..|.+++..|+..|+.++
T Consensus 343 -----------------~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 -----------------QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -----------------HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1224788899999999999999998875
No 255
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.71 E-value=0.55 Score=36.18 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhhhh
Q 007101 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (618)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 520 (618)
.+...+..+.++.+.+|..++..|.++....+ .......+.+..+...++++++-|=..|..+|..|+...
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 45567788899999999999999999986666 333334567888889999999999999999999999864
No 256
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.61 E-value=8.4 Score=42.26 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=106.3
Q ss_pred HHHHhhhcCchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHH--HHHHhhcCCCH-
Q 007101 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP--TLILMLRSEDS- 263 (618)
Q Consensus 188 ~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~--~L~~ll~~~~~- 263 (618)
+|+++...++.....+...|++..+...++. ...+++..+++.+.+++. ..+..........+. .+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~-~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAE-VLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 7889999999999999999999999999986 557899999999999997 333333322211122 33334444444
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHhh
Q 007101 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEML 342 (618)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~~~~~~L~~lL 342 (618)
+.-+.++..|+.+..+++.. ... ..+..+...+......-+.. .......-+.+.+..++
T Consensus 573 ersY~~~siLa~ll~~~~~~----~~~---------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKT----TEC---------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRIL 633 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcC----ccc---------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHh
Confidence 78888888888887664431 111 11122222222221111111 11122222222255555
Q ss_pred CC-CCHHHHHHHHHHHHHhhcC-CCcchhhHhcCCHHHHHHhh
Q 007101 343 QS-PDVQLREMSAFALGRLAQD-MHNQAGIAHNGGLVPLLKLL 383 (618)
Q Consensus 343 ~~-~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~l~~L~~ll 383 (618)
.. ..+..+.+|.|++.+++.. .++...+...++++.+.+.-
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 54 5677888999999999874 44555566777776665544
No 257
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.60 E-value=13 Score=40.68 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=107.1
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007101 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
++..+.+++...... -..|...|..+. ....... ..+..+..+++....... ..++.
T Consensus 396 av~~i~~~I~~~~~~-------------~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~----~~l~~ 453 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT-------------DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNS----PYLRE 453 (618)
T ss_dssp HHHHHHHHHHTT-S--------------HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-----HHHHH
T ss_pred HHHHHHHHHHcCCCC-------------HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCC----hhHHH
Confidence 566677777775441 123455555555 2212111 235666666654322110 15666
Q ss_pred HHHHHHHHhhhcCchh---------hHHHHhcCChHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCC
Q 007101 184 RAADAITNLAHENSSI---------KTRVRMEGGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 250 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~---------~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 250 (618)
.|+-+++.+....-.. .........++.+...+. ..+..-+..++.+|.|+-. ...
T Consensus 454 ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~ 522 (618)
T PF01347_consen 454 TALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PES 522 (618)
T ss_dssp HHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGG
T ss_pred HHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chh
Confidence 6666666665311111 111222345666666665 3566778889999999974 235
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhh
Q 007101 251 LPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 251 ~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~ 325 (618)
++.+...+... +..+|..|+++|..++...+.. +.+.+..++.+. +.++|..|..+|... .|..
T Consensus 523 i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~ 591 (618)
T PF01347_consen 523 IPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP 591 (618)
T ss_dssp HHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H
T ss_pred hHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH
Confidence 67777777655 6789999999999886665543 345567777654 566777777666553 1321
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHH
Q 007101 326 KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFA 356 (618)
Q Consensus 326 ~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~ 356 (618)
..+..+...+.. ++..|.......
T Consensus 592 -------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 592 -------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 135666666654 567776654443
No 258
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=90.05 E-value=0.9 Score=44.71 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=51.5
Q ss_pred EEEEECCeEEehhHHHHhcCC--HHHHHhhcCCCCCCCCCc--eecCCCCHHHHHHHHHHHhCCccccC
Q 007101 552 VTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFDEFCAFNLS 616 (618)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~e~~~~~--i~~~~~~~~~~~~~l~~~Yt~~~~~~ 616 (618)
|.+.|+|+.|..-+.-|+-.. .+|-++|++.|.-..... |-| |=+|+.|..+|+|+-||++.++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~ 80 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDAS 80 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCc
Confidence 678899999999988887444 599999998876544433 444 7789999999999999999874
No 259
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.96 E-value=23 Score=35.61 Aligned_cols=315 Identities=15% Similarity=0.109 Sum_probs=145.7
Q ss_pred hhhHHHHHHHHHHhhccccchHHhHHH----HHHHHHHHHHhcc-C-hhhHHHHHhCCCHHHHHHhhcCCCCCcc---cc
Q 007101 53 QALLSEVSAQVNVLNTTFSWLEADRAA----AKRATHVLAELAK-N-EEVVNWIVEGGAVPALVKHLQAPPTSEA---DR 123 (618)
Q Consensus 53 ~~~~~~v~~l~~~l~~~~~~~~~~~~~----~~~a~~~L~~l~~-~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~---~~ 123 (618)
++++.....+.+.+.+...... .... +...+++...+.. + |+.-+.-. ...+..+..+|.-+.+... ++
T Consensus 27 ~pll~l~~~~~~~i~~~~~~~~-~l~~~~~~l~lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~ 104 (370)
T PF08506_consen 27 EPLLELFKQTDQLIEANANNAA-SLKVLFEMLKLILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDD 104 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTT-HH-HHHHHHHHHHHHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SS
T ss_pred HHHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCcc
Confidence 4555555556665655322111 1112 2333445555544 3 43221111 1234455555554433211 11
Q ss_pred CCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHH
Q 007101 124 NLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (618)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 202 (618)
-+.+ -+.++..++..+...+ ...+.-..++ ...+..+.++|.........+ .+...++..|..++. .+..+..
T Consensus 105 e~~~-l~kvK~~i~~~~~ly~~kY~e~f~~~l-~~fv~~vw~lL~~~~~~~~~D---~lv~~al~FL~~v~~-~~~~~~l 178 (370)
T PF08506_consen 105 EPGL-LEKVKAWICENLNLYAEKYEEEFEPFL-PTFVQAVWNLLTKISQQPKYD---ILVSKALQFLSSVAE-SPHHKNL 178 (370)
T ss_dssp S--H-HHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHTC--SSGGGH---HHHHHHHHHHHHHHT-SHHHHTT
T ss_pred cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHc-chhHHHH
Confidence 1111 2366666666666665 2222211121 134555556665543332221 555666776666554 2222211
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCh
Q 007101 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSP 281 (618)
Q Consensus 203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 281 (618)
+...+.+..+++- -++-+++. +++. ..+.+..-.+.+-+-+.. ....-|.+|+..|..++...+
T Consensus 179 f~~~~~L~~Iie~-------------VI~Pnl~~-~e~D-~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~ 243 (370)
T PF08506_consen 179 FENKPHLQQIIEK-------------VIFPNLCL-REED-EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE 243 (370)
T ss_dssp T-SHHHHHHHHHH-------------THHHHHS---HHH-HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH-------------hccCccCC-CHHH-HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh
Confidence 1111111111111 12335553 2222 233333334444444442 234568889999999975533
Q ss_pred hHHHHHHhcCCHHHHHHhhc------CCChhHHHHHHHHHHHHhcCChh------------hHHHHHhcCChHHHHHhhC
Q 007101 282 NIKKEVLAAGALQPVIGLLS------SCCSESQREAALLLGQFAATDSD------------CKVHIVQRGAVRPLIEMLQ 343 (618)
Q Consensus 282 ~~~~~~~~~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~------------~~~~l~~~~~~~~L~~lL~ 343 (618)
.....+ +...+..++. +.++..+..|+..++.++..... ....+....++|.|. --.
T Consensus 244 ~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~ 318 (370)
T PF08506_consen 244 KQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDV 318 (370)
T ss_dssp HHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS
T ss_pred HHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccC
Confidence 222222 1223333333 34677788888899999854421 123344555666665 112
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHH
Q 007101 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (618)
+..|-++..|++.+...-..- ....+ .+.++.++++|.+++.-|...|+.++
T Consensus 319 ~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 356778888888887775431 12222 24688899999999999999888764
No 260
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.85 E-value=28 Score=36.37 Aligned_cols=102 Identities=21% Similarity=0.175 Sum_probs=72.0
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007101 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
.|.+..+++.+.+++..||..++..|+.+.. .-...+...-.|.+..|.+-+-+.++.||..|+.+|+.+-....+-..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 4678888899999999999999999999986 333334444457788888888889999999999999998432221111
Q ss_pred HHHhcCCHHHHHHhhc-CCChhHHHHHHH
Q 007101 286 EVLAAGALQPVIGLLS-SCCSESQREAAL 313 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~-~~~~~~~~~a~~ 313 (618)
. ....|..+++ +++.++|+.|+.
T Consensus 169 ~-----~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 R-----IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred H-----HHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 2335555565 446677766543
No 261
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.66 E-value=2.8 Score=37.50 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=60.0
Q ss_pred hhhHHHHhcCChHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCCcccHHHHH-hcCCHHHHHHhhcCCCHHHHH
Q 007101 198 SIKTRVRMEGGIPPLVELLEF---------TDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHY 267 (618)
Q Consensus 198 ~~~~~~~~~~~i~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~ 267 (618)
..-..|...||+..|+.+|.. .+......++.+|..+.. +......+. ..+++..|+..|.+++..++.
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 445567778899888888752 345788899999999996 445455554 478999999999999999999
Q ss_pred HHHHHHHHHh
Q 007101 268 EAVGVIGNLV 277 (618)
Q Consensus 268 ~a~~~L~~l~ 277 (618)
.++.+|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 262
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.43 E-value=5.3 Score=35.89 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCc-hhhHHHHhcCChHHH
Q 007101 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPL 212 (618)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~i~~L 212 (618)
..|+..|.-++..|+.+..+++...--.+-..|...+...... .++..++.+++.|...+. ...+.+....++|.+
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fE---yLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFE---YLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccc---eeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 3577777777899999999998876556666666554433222 677789999999998555 445556667899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhc--------CCHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhH
Q 007101 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--------NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (618)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (618)
+++++.+++--+..++.++..+.. ++..-+.++.. ..+..++ ++...+...+..+++++-..++.. +..
T Consensus 195 LrIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~a 272 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHA 272 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhH
Confidence 999999888777778887777765 44443333221 1222222 233455667778888887777544 443
Q ss_pred H
Q 007101 284 K 284 (618)
Q Consensus 284 ~ 284 (618)
+
T Consensus 273 R 273 (315)
T COG5209 273 R 273 (315)
T ss_pred H
Confidence 3
No 263
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.40 E-value=14 Score=35.01 Aligned_cols=218 Identities=15% Similarity=0.085 Sum_probs=117.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIV 330 (618)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~l~ 330 (618)
.|-..|.++++.+|..|+.+|+.+...-+.. .+...-+..|+..+.+. +......++.++..+.....-....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 3556778899999999999999887654421 12222234444444332 3444545555555554221111110
Q ss_pred hcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcC---
Q 007101 331 QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADN--- 404 (618)
Q Consensus 331 ~~~~~~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~--- 404 (618)
...++..+.+-.. ......|..+...+..+..+....-.-.....+..+++++. .+||+-...+...+..+...
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 1112333333222 23456778888888888765322211222345666777775 46888888888877777543
Q ss_pred CcchhHHHhhcccccccccchh------hhhHHHHHHHHHHHH---HHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhh
Q 007101 405 EDNVADFIRVGGVQKLQDGEFI------VQATKDCVAKTLKRL---EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (618)
Q Consensus 405 ~~~~~~l~~~~~~~~L~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 475 (618)
.+..+.+++. +.......|. ....++-+...+.+- ...+....++.|++=|.++.+.++..++.+|...
T Consensus 158 ~~~~e~lFd~--~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c 235 (262)
T PF14500_consen 158 SEFAEDLFDV--FSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKAC 235 (262)
T ss_pred chhHHHHHHH--hhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3333333332 1111111111 011111122111111 1234567889999999999999999999999987
Q ss_pred cC
Q 007101 476 CS 477 (618)
Q Consensus 476 ~~ 477 (618)
+.
T Consensus 236 ~~ 237 (262)
T PF14500_consen 236 IE 237 (262)
T ss_pred HH
Confidence 64
No 264
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.95 E-value=4.4 Score=35.14 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=79.0
Q ss_pred HHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhh-cCCCCCccccCCCcchhHHHHHHH
Q 007101 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHL-QAPPTSEADRNLKPFEHEVEKGSA 137 (618)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~~~~~~~~~~v~~~a~ 137 (618)
|.+++.|.+.+... .+..++.++++.|+-+.. +|-..+.+....- ..- ...+. .......
T Consensus 9 P~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~------------~~~~~~l 70 (160)
T PF11865_consen 9 PELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSND------------ESTDISL 70 (160)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccc------------cchhhHH
Confidence 45555555554433 346789999999998877 6654442221111 000 00000 1111111
Q ss_pred HHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhh
Q 007101 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (618)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll 216 (618)
.. .... ..+++-..+ ++..|++.|++..-. .-...++.++.++... ...+..-.-...+|.++..+
T Consensus 71 ~~-~~~~~~~ee~y~~v----vi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 71 PM-MGISPSSEEYYPTV----VINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred hh-ccCCCchHHHHHHH----HHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHH
Confidence 11 1222 344444443 478899999887654 3344566666666642 22222222245788999999
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 007101 217 EFTDTKVQRAAAGALRTLA 235 (618)
Q Consensus 217 ~~~~~~v~~~a~~~L~~l~ 235 (618)
+..++..++....-|..+.
T Consensus 138 ~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 138 RTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HhCCHHHHHHHHHHHHHHH
Confidence 8777788887776666654
No 265
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.24 E-value=2 Score=37.55 Aligned_cols=116 Identities=22% Similarity=0.158 Sum_probs=76.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcC--CHHHHHHhhcCC-ChhHHHHHHHHHHHhhcCCcchh
Q 007101 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVA 409 (618)
Q Consensus 333 ~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~--~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 409 (618)
..+..+..+|+++++.-|..++..+.-.+..... ..+.+.+ .+..++..++.. +..+.+.++.+|..|........
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567788899999999999999888888875322 2232332 366688888765 45678889999999876555555
Q ss_pred HHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcC
Q 007101 410 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (618)
Q Consensus 410 ~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 477 (618)
.+.+....+.+ +.++..++.++.. ......++.+|..+..
T Consensus 104 ~l~Rei~tp~l--------------------------~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNL--------------------------PKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccH--------------------------HHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 55443333321 2456666666665 4556667777776643
No 266
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.08 E-value=15 Score=40.33 Aligned_cols=159 Identities=21% Similarity=0.132 Sum_probs=89.1
Q ss_pred HHHHHHhhcC----CChhHHHHHHHHHHHHhcC---Ch------hhHHHHHhcCChHHHHHhhC----CCCHHHHHHHHH
Q 007101 293 LQPVIGLLSS----CCSESQREAALLLGQFAAT---DS------DCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAF 355 (618)
Q Consensus 293 l~~L~~ll~~----~~~~~~~~a~~~L~~l~~~---~~------~~~~~l~~~~~~~~L~~lL~----~~~~~v~~~a~~ 355 (618)
+..+..++.. .+..++..|+.+++.+... .. ..........+++.+...+. ..+...+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 4445555543 2345666777777776521 10 01111222346666666665 457788889999
Q ss_pred HHHHhhcCCCcchhhHhcCCHHHHHHhhcCC---ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHH
Q 007101 356 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 432 (618)
Q Consensus 356 ~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~ 432 (618)
+|+|+.. ...++.|..++... +..+|..|+++|..++.....
T Consensus 513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~------------------------- 557 (618)
T PF01347_consen 513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE------------------------- 557 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------------------------
T ss_pred HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------------------------
Confidence 9999964 23577788877665 678999999999988644321
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhC--CHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhc-CCChhhhhhH
Q 007101 433 CVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDG 509 (618)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a 509 (618)
.+.+.+++++.+. ++++|..|..+|... .+. ...+..+...+. +++..|..+.
T Consensus 558 ---------------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~-------~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 558 ---------------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPS-------PSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp ---------------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred ---------------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCC-------HHHHHHHHHHHhhCchHHHHHHH
Confidence 2344566666664 678888887766642 111 123556666664 3555655444
Q ss_pred H
Q 007101 510 A 510 (618)
Q Consensus 510 ~ 510 (618)
.
T Consensus 614 ~ 614 (618)
T PF01347_consen 614 Y 614 (618)
T ss_dssp H
T ss_pred H
Confidence 3
No 267
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=87.32 E-value=32 Score=34.04 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=112.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCcccHHHHHhc--CCHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC--NALPTLILMLRSE-----D--------SAIHYEAVGV 272 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~--~~~~~L~~ll~~~-----~--------~~v~~~a~~~ 272 (618)
++.+.+.|.+....+...++..|..++. ........+.+. --.+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888888888888899999999997 554555555442 2245566666421 1 2889999888
Q ss_pred HHHHhc-CChhHHHHHHh-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC----hhhHHHHHhcCChHHHHHhhCCCC
Q 007101 273 IGNLVH-SSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVHIVQRGAVRPLIEMLQSPD 346 (618)
Q Consensus 273 L~~l~~-~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~l~~~~~~~~L~~lL~~~~ 346 (618)
+..+.. .++..+..++. .+.+..+.+-+...+.++....+.+|..-.-.+ ...+..+.+...+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777654 45566666664 567888888888888888888888777533232 234555667778888888777766
Q ss_pred H----HHHHHHHHHHHHhhcCCCc
Q 007101 347 V----QLREMSAFALGRLAQDMHN 366 (618)
Q Consensus 347 ~----~v~~~a~~~L~~l~~~~~~ 366 (618)
+ .++..+-..|..+|+++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 8899999999999976543
No 268
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.09 E-value=8.4 Score=36.85 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCC--cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhc-C
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-G 207 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~ 207 (618)
+-+--+...+.-++.++.....+...+ ....+..++....... ....+-.+++++.|+.. ++..+..+... +
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~ 152 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSS----PPANQMLALRLLANLFS-HPPGRQLLLSHFD 152 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTS----SHHHHHHHHHHHHHHTT-SCCCHHHHHCTHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCC----cHHHHHHHHHHHHHhhC-CCccHHHHHhccc
Confidence 335677777777777777666555443 2455555555544321 22778889999999988 44445544432 2
Q ss_pred -ChHHHHHhhcCC----CHHHHHHHHHHHHHhhcCCcccH-HHHHhcCCHHHHHHh-hc-CCCHHHHHHHHHHHHHHhcC
Q 007101 208 -GIPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILM-LR-SEDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 -~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~l-l~-~~~~~v~~~a~~~L~~l~~~ 279 (618)
.+...+..+... +..++..++..+.|++....... ..-.....+..+.+. .. ..++++...++-+|+++...
T Consensus 153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~ 232 (268)
T PF08324_consen 153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSS 232 (268)
T ss_dssp TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence 232333333333 67899999999999975211111 000111234555663 33 26899999999999999876
Q ss_pred ChhH
Q 007101 280 SPNI 283 (618)
Q Consensus 280 ~~~~ 283 (618)
.+..
T Consensus 233 ~~~~ 236 (268)
T PF08324_consen 233 SDSA 236 (268)
T ss_dssp SHHH
T ss_pred ChhH
Confidence 5544
No 269
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.02 E-value=34 Score=36.60 Aligned_cols=189 Identities=11% Similarity=0.035 Sum_probs=111.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcC-Cccc----HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFK-NDEN----KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~----~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
|.+.+-|+-.+..||.+|+..+.++--- +|+. .+.+++ .-...+.++|.++-+.||..|+.-+..+.+..=...
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 5666777788999999999999887432 2222 222333 236778899999999999999887777643210000
Q ss_pred HHHHhcCCHHHHHHhh-cCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007101 285 KEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
...+-..++..+..-+ .+...++|......|-.+... |.+.. +. .-++|.+-..|.+....||.++...|..+-..
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh~-~l-e~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSHP-LL-EQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccchh-HH-HHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 0000011222222222 234557777777777777633 33221 11 12455666677788999999988888777432
Q ss_pred CCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007101 364 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
. ..++..--....++.-|...+..+...-+..+.+.+..
T Consensus 333 r--a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP 371 (1005)
T KOG1949|consen 333 R--AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLP 371 (1005)
T ss_pred h--hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcC
Confidence 1 11223333345566666666666666666666666543
No 270
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=17 Score=40.48 Aligned_cols=252 Identities=19% Similarity=0.136 Sum_probs=139.5
Q ss_pred HHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHh
Q 007101 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (618)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~l 215 (618)
..+|..|. .+.+++..+.++.++..++.++-+. +-+...++++..|...++..- ...-+-.++..
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind----------ehRSslLrivscLitvdpkqv----hhqelmalVdt 728 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----------EHRSSLLRIVSCLITVDPKQV----HHQELMALVDT 728 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----------HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHH
Confidence 34555555 7777778888777777777666322 566667777777776555411 11234566677
Q ss_pred hcCCC------------HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcC----------CCHHHHHHHHHHH
Q 007101 216 LEFTD------------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS----------EDSAIHYEAVGVI 273 (618)
Q Consensus 216 l~~~~------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----------~~~~v~~~a~~~L 273 (618)
|+++- ..+.....++++.+...+...+..+.+++++..|...|.. ++.-+...-...|
T Consensus 729 Lksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkil 808 (2799)
T KOG1788|consen 729 LKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL 808 (2799)
T ss_pred HHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence 76521 2455667788888876666777888899998888776631 1222222223333
Q ss_pred HHHh----cCChhHHH-------------HHHhcCCH-----HHHHHhh--------cCCChhHHHHHHHHHHHHh----
Q 007101 274 GNLV----HSSPNIKK-------------EVLAAGAL-----QPVIGLL--------SSCCSESQREAALLLGQFA---- 319 (618)
Q Consensus 274 ~~l~----~~~~~~~~-------------~~~~~~~l-----~~L~~ll--------~~~~~~~~~~a~~~L~~l~---- 319 (618)
..+. ..++.++. .+...|.+ ...+.++ ..+.......|+..+..+-
T Consensus 809 FrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednif 888 (2799)
T KOG1788|consen 809 FRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIF 888 (2799)
T ss_pred HHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccccee
Confidence 2221 11222221 11122211 0111111 1111111122333333221
Q ss_pred -----cCC-hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CcchhhHhcCCHHHHHHhhc---CCChh
Q 007101 320 -----ATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLD---SKNGS 389 (618)
Q Consensus 320 -----~~~-~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~l~~L~~ll~---~~~~~ 389 (618)
++- ......+...|++..++..+-...+.++..-+..+..+++.+ .+...+...|.++.|++++. +++..
T Consensus 889 avntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgssp 968 (2799)
T KOG1788|consen 889 AVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSP 968 (2799)
T ss_pred eeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCch
Confidence 010 123445678899999999888889999999999999998854 44444555577777777663 34444
Q ss_pred HHHHHHHHHHHhh
Q 007101 390 LQHNAAFALYGLA 402 (618)
Q Consensus 390 v~~~a~~~L~~l~ 402 (618)
....+..++.-|+
T Consensus 969 fLshalkIvemLg 981 (2799)
T KOG1788|consen 969 FLSHALKIVEMLG 981 (2799)
T ss_pred HhhccHHHHHHHh
Confidence 4455555555444
No 271
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.49 E-value=5.3 Score=37.93 Aligned_cols=140 Identities=15% Similarity=0.230 Sum_probs=93.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHh
Q 007101 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH 372 (618)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 372 (618)
+...+..|.+.+|+....++..+..++...++.....+ ..++-.+++-+++....|-..|+.++.-+...-.+....
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45566777888899998888888888755443322222 335666667777888899999999999887643332111
Q ss_pred cCCHHHH-HHhhcC---CChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 007101 373 NGGLVPL-LKLLDS---KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (618)
Q Consensus 373 ~~~l~~L-~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (618)
.+..+ ..+++. .+.-|++.|-.+|..+..+..- ..
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------------------------------------~~ 205 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------------------------------------QK 205 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------------------------------------HH
Confidence 22222 233332 3455788888888887754322 13
Q ss_pred hHHHHHHHHhhCCHhHHHHHHHHHHhhc
Q 007101 449 VLNHLLYLMRVAEKGVQRRVALALAHLC 476 (618)
Q Consensus 449 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (618)
+++.|+..+.+.++.++..++.+..+..
T Consensus 206 ~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 206 LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 5677888899999999998888777663
No 272
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.41 E-value=53 Score=35.57 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=91.1
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh----cCchhhHHHHhcCChHHHHHhhc----CCCHHHHHHHHH
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAG 229 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~ 229 (618)
.+..+..+++....... ..++..|+-+++++.. ..+... .......++.+...|. ..+..-+...+.
T Consensus 394 ~l~~l~~l~~~~~~~~~----~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 394 ILKALFELAESPEVQKQ----PYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred HHHHHHHHhcCcccccc----HHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 36777777776543221 1455555656655543 222111 1122335566665553 345556677888
Q ss_pred HHHHhhcCCcccHHHHHhcCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--C
Q 007101 230 ALRTLAFKNDENKNQIVECNALPTLILMLR---SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--C 304 (618)
Q Consensus 230 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~ 304 (618)
+|.|+.. ...++.+...+. ..+..+|..|+++|..++...+.. +-+.+..++.+. +
T Consensus 469 aLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~ 529 (574)
T smart00638 469 ALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEP 529 (574)
T ss_pred hhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCC
Confidence 8888874 123444555554 335689999999999887554443 334566666554 5
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHH
Q 007101 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSA 354 (618)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~ 354 (618)
.++|..|..+|... .|.. ..+..+...+.. ++..|.....
T Consensus 530 ~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 530 PEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred hHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhH
Confidence 67777777666554 1321 134555555543 5666655433
No 273
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=85.86 E-value=17 Score=32.25 Aligned_cols=113 Identities=22% Similarity=0.200 Sum_probs=73.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC-------------------CHHHHHHhhc-CCCHHHHHHH
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-------------------ALPTLILMLR-SEDSAIHYEA 269 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------------------~~~~L~~ll~-~~~~~v~~~a 269 (618)
..+--++.++++.+|..|+.++..|..+....-....+.+ .=..|+..++ ..+..+....
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3444456788999999999999999875432222221111 1123444444 4577888999
Q ss_pred HHHHHHHhcCChhHHHHH-HhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 007101 270 VGVIGNLVHSSPNIKKEV-LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (618)
Q Consensus 270 ~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (618)
++++..+....+..+-.. +-..++..+..++.+.+.+++..++.+++.+.+..
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 999999988877643211 11224455566677888999999999998887543
No 274
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=85.51 E-value=26 Score=31.10 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhcCCCcch------hhH------hcCCHHHHH-HhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhc
Q 007101 349 LREMSAFALGRLAQDMHNQA------GIA------HNGGLVPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 415 (618)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~------~l~------~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 415 (618)
+|..|+.+|..++...+.+. .+. ....-+.|+ -++.++++.+|..|+.+|..|-.+. +..+....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHH
Confidence 67778888888876522221 111 112233344 4557889999999999999998664 33333221
Q ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC-CHhHHHHHHHHHHhhcCCCccccceecCCchHHH
Q 007101 416 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 494 (618)
Q Consensus 416 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 494 (618)
--. -....|..- ...+..+-...+ ..|+..+..+ +..+..+.+.+|..+.....-... ..|.++.+
T Consensus 80 ~~~-~~~~sFtsl------S~tLa~~i~~lH----~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~ 146 (182)
T PF13251_consen 80 ESK-GPSGSFTSL------SSTLASMIMELH----RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEV 146 (182)
T ss_pred hcC-CCCCCcccH------HHHHHHHHHHHH----HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHH
Confidence 111 000111111 111111111112 2345555554 778888999999999765552222 45565555
Q ss_pred H----HHhcCCChhhhhhHHHHHHHhhhh
Q 007101 495 L----GLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 495 ~----~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
+ .++.+.|++++..+..++..+..-
T Consensus 147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 147 VTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 5 556689999999999999888765
No 275
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.50 E-value=6.3 Score=34.21 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=78.1
Q ss_pred CCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHH
Q 007101 249 NALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (618)
Q Consensus 249 ~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (618)
..++.|+.+++. .+..+|.+++++|+.|-.-+|..-+.+.... +.-. -............ ...+.....++.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l-~~~~~~~~~ee~-- 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISL-PMMGISPSSEEY-- 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHH-hhccCCCchHHH--
Confidence 356778888884 4689999999999999776665433222110 0000 0001111111111 111111112222
Q ss_pred HHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007101 328 HIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 328 ~l~~~~~~~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
.-.-++..|+..|+++.. .-...+..++.++......+..-.-...++.+++.++..+...++....-|..|.
T Consensus 83 --y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 --YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 223357888888887432 2233556666665543222222233456888899998777788888777777664
No 276
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=59 Score=35.22 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=77.4
Q ss_pred CCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh---cCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 007101 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (618)
Q Consensus 156 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (618)
.|.++.+...|.+....+..-...--.+.|++.+.++.. .+.+.+. +.+.-.++.++..++++.--++..+|..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an-~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAAN-VMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHH-HHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 578899999995543221110001233456666666654 2333333 333345567777778888888999999999
Q ss_pred HhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 007101 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (618)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (618)
.+..+ .++.-+-..+.+...+.+++.+-.|+..|+-++..+..+.
T Consensus 486 ~~eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 486 TIEED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 99543 3333333445677788888888899999999998887664
No 277
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.59 E-value=5.4 Score=36.52 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhcCCCcchhhHhcCC-------HHHHHHhhc-CCChhHHHHHHHHHHHhhcCCcchhH
Q 007101 348 QLREMSAFALGRLAQDMHNQAGIAHNGG-------LVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVAD 410 (618)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~-------l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (618)
.-|..++.+|+.|+-.+.|-..+...+- +..|.+++. .++...|+.|+-.|.+|+..++....
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r 209 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAAR 209 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 4578999999999988777666555544 333445553 46788999999999999988765443
No 278
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.20 E-value=30 Score=37.42 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=74.9
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CCCcchhhHhcCCHHHHHHhh----cCCChhHHHHHHHHHHHh
Q 007101 334 AVRPLIEMLQS----PDVQLREMSAFALGRLAQ----DMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALYGL 401 (618)
Q Consensus 334 ~~~~L~~lL~~----~~~~v~~~a~~~L~~l~~----~~~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~~l 401 (618)
.+..+..++++ +++.++..+..+++++.. +............++.+.+.+ ...+...+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 46677777765 366788888888877764 222111112223444444444 334555667788888887
Q ss_pred hcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---hCCHhHHHHHHHHHHhhcCC
Q 007101 402 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR---VAEKGVQRRVALALAHLCSP 478 (618)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~l~~~ 478 (618)
.... .+..+..++. ..+..+|..|+++|.+++..
T Consensus 474 g~~~-------------------------------------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 474 GHPS-------------------------------------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred CChh-------------------------------------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5321 2222333333 22567888888888887642
Q ss_pred CccccceecCCchHHHHHHhcC--CChhhhhhHHHHHHH
Q 007101 479 DDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFK 515 (618)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~ 515 (618)
... .+-+.|+.++.+ .++++|..|..+|..
T Consensus 511 ~p~-------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 511 DPR-------KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred Cch-------HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 221 134556666654 566777776666543
No 279
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.70 E-value=9.2 Score=40.46 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred cCCHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCC
Q 007101 248 CNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATD 322 (618)
Q Consensus 248 ~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~ 322 (618)
..+-|.+.....+ .+++++..|.-+|..+..-+.+.... -+|.++..+. +++|.+|..|...|+.++..-
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceeh
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007101 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 323 ~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
....... -..|..-|.+.+..|+..+..++..|.- ..++--.|-++.+..++.+.+.++...|-..+..++
T Consensus 966 N~~~de~-----t~yLyrrL~De~~~V~rtclmti~fLil----agq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 966 NTTADEH-----THYLYRRLGDEDADVRRTCLMTIHFLIL----AGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhhhHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHH----ccceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Q ss_pred cCCcc
Q 007101 403 DNEDN 407 (618)
Q Consensus 403 ~~~~~ 407 (618)
..+..
T Consensus 1037 ~KdNt 1041 (1128)
T COG5098 1037 KKDNT 1041 (1128)
T ss_pred hcccc
No 280
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=83.48 E-value=56 Score=33.35 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhccC----hhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 79 AAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (618)
Q Consensus 79 ~~~~a~~~L~~l~~~----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (618)
.|+.|+-....++++ ..+++.+.+.=+.+.+-++|.+.+... +.| +.-.+.-+...|.-+|..|+....--
T Consensus 27 e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~--dcp---d~Vy~~i~itvLacFC~~pElAsh~~ 101 (698)
T KOG2611|consen 27 ERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPG--DCP---DDVYLQISITVLACFCRVPELASHEE 101 (698)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCC--CCc---HHHHHHHHHHHHHHHhCChhhccCHH
Confidence 578888888888873 456777888888999999998765421 111 12345567777888888877542222
Q ss_pred hCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHH
Q 007101 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRT 233 (618)
Q Consensus 155 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~ 233 (618)
-.+.||.++.++....+..... .-.+...+-.+|..++.. +.....++..|+++.+.+.-.-++ ..-...++.++.-
T Consensus 102 ~v~~IP~llev~~~~~d~d~e~-~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll 179 (698)
T KOG2611|consen 102 MVSRIPLLLEVMSKGIDTDYED-NLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLL 179 (698)
T ss_pred HHHhhhHHHHHHHhcCCCchhh-hHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 2346999999998765542111 114778888999988885 444555777999999987665433 1222333333333
Q ss_pred hhcC---CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007101 234 LAFK---NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 234 l~~~---~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
.... .++....+.. .+..+..=+...+...+.+.+..|..+..
T Consensus 180 ~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 180 LVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3321 1222222221 13333333334456678888888876533
No 281
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.42 E-value=43 Score=35.63 Aligned_cols=165 Identities=21% Similarity=0.163 Sum_probs=89.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhc
Q 007101 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (618)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (618)
.+..-+++.+-.|+-+|+.+..+...+ ..+++ ..++..++..+. .++.-+..++++|.|+..+ +..++.+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~-s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSN-SLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchh-hhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 333445677777888888777643322 22222 335555666555 5677788999999999766 4444443322
Q ss_pred --CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC---C--CCHHHHHHHHHHHHHhhcC
Q 007101 291 --GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---S--PDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 291 --~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~---~--~~~~v~~~a~~~L~~l~~~ 363 (618)
..+..++..-..++..++...+....|.+. -..+.-.+.+..+.+...+. . .+.+.....+-||++|+..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 222333333233334454444444444431 01111111334444444332 2 2334455667788999988
Q ss_pred CCcchhhHhcCCHHHHHHhhcC
Q 007101 364 MHNQAGIAHNGGLVPLLKLLDS 385 (618)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~ 385 (618)
+....++...-.+..+..-+++
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHH
Confidence 7777777777777777766644
No 282
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.68 E-value=72 Score=34.09 Aligned_cols=132 Identities=17% Similarity=0.125 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
|.-|.+|-.+|..++.+|++ +....-++.+.+.+ --+-.|..+|..+.....+... .....+-
T Consensus 20 ~~~R~~AE~~L~e~s~spec---------lskCqlll~~gs~p-------Ys~mlAst~L~Klvs~~t~lpl-~qrldir 82 (1082)
T KOG1410|consen 20 PTARHRAEKALAELSESPEC---------LSKCQLLLERGSYP-------YSQMLASTCLMKLVSRKTPLPL-EQRLDIR 82 (1082)
T ss_pred HHHHHHHHHHHHHHccCHHH---------HHHHHHHHHcCCCc-------hHHHHHHHHHHHHHcCCCCCcH-HHHHHHH
Confidence 37899999999999999986 33333344444443 3445566777777654432211 1112233
Q ss_pred HHHHHhhcCCCH----HHHHHHHHHHHHhhcC--CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007101 210 PPLVELLEFTDT----KVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 210 ~~L~~ll~~~~~----~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
..++..+..+.| -+....+..++.+... .+..++...-.+.+..+.+.++.++.+-..-++.+|..++.
T Consensus 83 ~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvq 157 (1082)
T KOG1410|consen 83 NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQ 157 (1082)
T ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 566677765433 3444445555555432 23334444445678888888988877777777777777743
No 283
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.66 E-value=75 Score=34.21 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=93.2
Q ss_pred HHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCC--hhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 007101 245 IVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSS--PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (618)
Q Consensus 245 ~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 321 (618)
-++.|+++.++. .+.-+...+....-+.|+.+...- ......++-.=.=|.+..-|+..+..+|..|+..+.++..-
T Consensus 125 eiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~ 204 (1005)
T KOG1949|consen 125 EIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPI 204 (1005)
T ss_pred HHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccC
Confidence 345677777765 333333334444444555543221 01112222222335566777888999999999999988632
Q ss_pred -Chhh----HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHH-----hhcCCChhHH
Q 007101 322 -DSDC----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-----LLDSKNGSLQ 391 (618)
Q Consensus 322 -~~~~----~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~-----ll~~~~~~v~ 391 (618)
+|+. ...++ .+-...+.++|.++-+.+|..|..-++....... .++-...+..++. +..+...+||
T Consensus 205 ~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW---e~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 205 RDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW---EMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 2222 22232 2345778899999999999998888777654210 0111112222222 2244567889
Q ss_pred HHHHHHHHHhhcCCcchhHH
Q 007101 392 HNAAFALYGLADNEDNVADF 411 (618)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~l 411 (618)
......|-.+..++.....+
T Consensus 281 ~svf~gl~~~l~np~sh~~l 300 (1005)
T KOG1949|consen 281 CSVFKGLPMILDNPLSHPLL 300 (1005)
T ss_pred hhHhcCcHHHHcCccchhHH
Confidence 99999998888887664433
No 284
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.48 E-value=68 Score=33.60 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCC--CcchhhHhcC--C
Q 007101 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDM--HNQAGIAHNG--G 375 (618)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~~--~ 375 (618)
+....+-.++.||+..... ...+..|+.+|.+ .+..+..-|...+..+..+. ..-..+-... .
T Consensus 230 ~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 4555666788888743222 2246778888832 34556667778888776654 2222332333 6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007101 376 LVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
++.+...++.+++.+-...+..+.++..
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 7778888888888777777777777763
No 285
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=82.11 E-value=63 Score=32.99 Aligned_cols=136 Identities=16% Similarity=0.160 Sum_probs=89.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCh---hHHHHHHhcCCHHHHHHhhcCC------ChhHHH-HHHHHHHHHhcC
Q 007101 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSP---NIKKEVLAAGALQPVIGLLSSC------CSESQR-EAALLLGQFAAT 321 (618)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~------~~~~~~-~a~~~L~~l~~~ 321 (618)
..+..+++..+.+-+..|+-....++.+.+ ..++.+.++-+.+.+-.++.+. .+.+-. -+..+|.-+|+
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~- 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR- 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence 346667776677778888888888876533 2345566777778888888653 233433 34455666654
Q ss_pred ChhhHHHHHhcCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCCh
Q 007101 322 DSDCKVHIVQRGAVRPLIEMLQS-PDV------QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 388 (618)
Q Consensus 322 ~~~~~~~l~~~~~~~~L~~lL~~-~~~------~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 388 (618)
.++....----+-+|.|+.++.. .++ .+.+.+-.+|..++..+.....++..|+++.+.++-.-++.
T Consensus 93 ~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~ 166 (698)
T KOG2611|consen 93 VPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDG 166 (698)
T ss_pred ChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCC
Confidence 34433222223468888888864 222 27778888999999988888889999999999877654433
No 286
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.08 E-value=12 Score=35.88 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCC--CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 007101 80 AKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g 157 (618)
++=++..++-++.++.....+...+ +...+..++...... ..+..+..+++++.|+..++..+..+....
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~ 151 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS--------SPPANQMLALRLLANLFSHPPGRQLLLSHF 151 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT--------SSHHHHHHHHHHHHHHTTSCCCHHHHHCTH
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC--------CcHHHHHHHHHHHHHhhCCCccHHHHHhcc
Confidence 5566777777777777766665543 356666666554431 123778899999999998888887777543
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhH-HHHhcCChHHHHHhhc-C-CCHHHHHHHHHHHHHh
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLE-F-TDTKVQRAAAGALRTL 234 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~i~~L~~ll~-~-~~~~v~~~a~~~L~~l 234 (618)
. ..++..+......... ....++..++..+.|++......+. .-.....+..+.+.+. . .+++....++.+|+++
T Consensus 152 ~-~~i~~~~~~~~~~~~~-~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL 229 (268)
T PF08324_consen 152 D-SSILELLSSLLSSLLD-SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTL 229 (268)
T ss_dssp H-TCHHHHCHCCCTTS-H-HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 2 2344444333221100 0127888888899998752111110 0000113455555332 2 6899999999999999
Q ss_pred hcCC
Q 007101 235 AFKN 238 (618)
Q Consensus 235 ~~~~ 238 (618)
....
T Consensus 230 ~~~~ 233 (268)
T PF08324_consen 230 LSSS 233 (268)
T ss_dssp HCCS
T ss_pred hccC
Confidence 9643
No 287
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.68 E-value=0.3 Score=47.68 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=47.9
Q ss_pred CeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhCCc
Q 007101 558 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEFCA 612 (618)
Q Consensus 558 ~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 612 (618)
+..+.+|+.+++++|++|+.|+..+..+.....+.+.+.+++.++.+..|.|++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s 163 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPS 163 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEecc
Confidence 4569999999999999999999987766666677888999999999999999853
No 288
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.96 E-value=93 Score=34.20 Aligned_cols=190 Identities=18% Similarity=0.182 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccC---------------CCcchhHH-HHHHHHHHHH
Q 007101 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRN---------------LKPFEHEV-EKGSAFALGL 142 (618)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~---------------~~~~~~~v-~~~a~~~L~~ 142 (618)
....|+..|.+.++.+.+...+...+++..+.+...-++...+.+. ..-+|-+. |+.|+..+..
T Consensus 309 Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 309 LVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence 5567788888888877777677777777666654433332211100 00011133 5567777777
Q ss_pred hcCChhhHHHHHhCCcHHHHH-HHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhc----CCh----HHHH
Q 007101 143 LAVKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME----GGI----PPLV 213 (618)
Q Consensus 143 l~~~~~~~~~~~~~g~l~~L~-~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~----~~i----~~L~ 213 (618)
|+.+-+.+.. |++..-+ .+|..-..+ +...|.-...+...+..++......+.-+... +.+ ..+.
T Consensus 389 L~~~fe~~vt----~v~~~~v~~~l~~y~~n--PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~il 462 (960)
T KOG1992|consen 389 LCKNFEGQVT----GVFSSEVQRLLDQYSKN--PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQIL 462 (960)
T ss_pred HHHHhcchhH----HHHHHHHHHHHHHhccC--CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhh
Confidence 8733232221 2222222 233322111 11235666677777777776433222111111 111 1112
Q ss_pred HhhcC----CCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007101 214 ELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 214 ~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
.-|.+ ..+-++..+++-+... .+.-....++. .++.++..|+.+..-+...|+.++-.+..
T Consensus 463 p~L~s~~vn~~pilka~aIKy~~~F--R~ql~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 463 PDLLSPNVNEFPILKADAIKYIYTF--RNQLGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HHhccCccccccchhhcccceeeee--cccCChHHHHH--HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 22222 3345555555443322 23445555665 48999999999999999999999877743
No 289
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.47 E-value=19 Score=31.43 Aligned_cols=108 Identities=23% Similarity=0.182 Sum_probs=68.3
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCcch
Q 007101 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQA 368 (618)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 368 (618)
....+.+++++++...+-.++..+.-.+..++ ...+.+ ...+..++.+|+. ..+.+.+.++.+|..+...-....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45567888888888888877777777764432 122222 3467888888887 456778889999888865333322
Q ss_pred h----hHhc---CCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 007101 369 G----IAHN---GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (618)
Q Consensus 369 ~----l~~~---~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (618)
. +... +.++.++++++. ......++.+|..+..
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 2 2222 224445555553 5666778888887753
No 290
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.22 E-value=55 Score=31.11 Aligned_cols=209 Identities=11% Similarity=0.066 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh
Q 007101 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i 209 (618)
.+|..|...|+.+. .-+... ....-+..|+....+.-.+. .....++..+..|.....-.... ....+
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~------~~~~~~l~gl~~L~~~~~~~~~~--~~~i~ 82 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDH------ACVQPALKGLLALVKMKNFSPES--AVKIL 82 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccH------hhHHHHHHHHHHHHhCcCCChhh--HHHHH
Confidence 89999999998887 333211 11222455555544432221 44555566666666422211111 11122
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhHHHH
Q 007101 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (618)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (618)
..+.+-.. +.....|..+...+..+.......... ...+.+..+++.+. ..||.-...+...+..+....+.
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~---- 157 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI---- 157 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc----
Confidence 33333222 223577888888888887632222211 22456777888777 55788878788777777554331
Q ss_pred HHhcCCHHHHHHhhcC---------C-C--hhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHH
Q 007101 287 VLAAGALQPVIGLLSS---------C-C--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354 (618)
Q Consensus 287 ~~~~~~l~~L~~ll~~---------~-~--~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~ 354 (618)
....+-+...+.. + + .-.++.....|.+.....+... .-.+|.|++-|.++.+.++..++
T Consensus 158 ---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 158 ---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred ---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHHHH
Confidence 2233334444321 1 1 1234555556666554444433 23689999999999999999999
Q ss_pred HHHHHhhcC
Q 007101 355 FALGRLAQD 363 (618)
Q Consensus 355 ~~L~~l~~~ 363 (618)
.+|..++..
T Consensus 230 ~tL~~c~~~ 238 (262)
T PF14500_consen 230 QTLKACIEN 238 (262)
T ss_pred HHHHHHHHH
Confidence 999988763
No 291
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.61 E-value=1e+02 Score=33.89 Aligned_cols=238 Identities=15% Similarity=0.157 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHH
Q 007101 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (618)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 296 (618)
.++...|..+..-+...++....+.. ..+.....+|.+.. ..+...|+..|.+.+.. +.....+...+++..+
T Consensus 262 ~lka~ICEi~~LY~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r-~~y~~~F~~~~vl~~i 339 (960)
T KOG1992|consen 262 KLKAQICEIFNLYATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR-PHYAELFEGENVLAQI 339 (960)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh-hhhHhhhcchHHHHHH
Confidence 44455555555555444444332322 13333344444221 23445566666666543 2222222233333333
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHH-HHHHHHHHHHhhcCCCcchhhHhcCC
Q 007101 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL-REMSAFALGRLAQDMHNQAGIAHNGG 375 (618)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~l~~~~~ 375 (618)
.+.. ++.|+... ....++.+.+-+..+-.-|+..|.+. |..|+..+..|+.+.+.+..-+-..-
T Consensus 340 ~e~V-------------vlpN~~lR--~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~ 404 (960)
T KOG1992|consen 340 CEKV-------------VLPNLILR--EEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE 404 (960)
T ss_pred HHhh-------------cccccccc--hhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3222 33444321 22234666777788888888766554 56788888999987654432221222
Q ss_pred HHHHHH-hhc--CCChhHHHHHHHHHHHhhcCCc-------------chhHHHhhcccccccccc-hhhhhHHHHHHH--
Q 007101 376 LVPLLK-LLD--SKNGSLQHNAAFALYGLADNED-------------NVADFIRVGGVQKLQDGE-FIVQATKDCVAK-- 436 (618)
Q Consensus 376 l~~L~~-ll~--~~~~~v~~~a~~~L~~l~~~~~-------------~~~~l~~~~~~~~L~~~~-~~~~~~~~~~~~-- 436 (618)
+..+++ ... +.+|.-...+......++...+ +...++....++.|.... ..+..++.-..+
T Consensus 405 v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~ 484 (960)
T KOG1992|consen 405 VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYI 484 (960)
T ss_pred HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccccee
Confidence 333322 222 3456666666666666653211 112222222222222210 001000000000
Q ss_pred --HHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhc
Q 007101 437 --TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (618)
Q Consensus 437 --~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 476 (618)
.-+.+....--..++.++..|..+...+...|+.++-.+-
T Consensus 485 ~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 485 YTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred eeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 0011111123467889999999999999999999998874
No 292
>PRK09169 hypothetical protein; Validated
Probab=78.73 E-value=1.8e+02 Score=36.29 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHh
Q 007101 346 DVQLREMSAFALGRL 360 (618)
Q Consensus 346 ~~~v~~~a~~~L~~l 360 (618)
++.-..+++|+|..+
T Consensus 413 naQ~vANaLnALsKW 427 (2316)
T PRK09169 413 NAQGVANALNALSKW 427 (2316)
T ss_pred ChHHHHHHHHHHhcC
Confidence 344444555555544
No 293
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.53 E-value=36 Score=28.37 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=57.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-cHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhcC
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~ 279 (618)
++..|...++++++.++..|+.+|-.+...... ....+.....+..|++++.. .++.|+..++..+...+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999874433 45566666778889998875 4788999999999888654
No 294
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.26 E-value=35 Score=28.84 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=59.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 007101 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 278 (618)
.++..|..-+.++++.++..|+..|-.+... .......+...+++..|.+++. ..++.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999988864 2445666778889999999887 5678899999999988854
No 295
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.69 E-value=20 Score=39.63 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 007101 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (618)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (618)
.+.++..+.-+|+++| ....... ..+|.|++-|.-.... .++.+.+-+++.+|... .+....
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~Y-----Tam~d~ 1006 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSY-----TAMTDR 1006 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHH-----HHHHHH
Confidence 6788999999999999 4444322 3578899888776553 67777777778888632 123346
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHh-cCC-HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNA-LPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~-~~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (618)
.+|.+...|.++++-+|+.++-.|.+|... .+.. .|. +-.++..+-+.+++++..|-.+++.+...
T Consensus 1007 YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~------~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1007 YIPMIAASLCDPSVIVRRQTIILLARLLQF------GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hhHHHHHHhcCchHHHHHHHHHHHHHHHhh------hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999851 1222 111 12223333367888998888888887543
No 296
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.38 E-value=23 Score=30.10 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=59.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-ccHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcC
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 279 (618)
++..|..-+.+.++.++..|+..|-.+..... .....+...+++..|.+++.. .++.|+..++..+...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 56788888899999999999999998886433 355667778889999999987 7889999999999888643
No 297
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.08 E-value=79 Score=36.57 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 259 (618)
.+++.++++|..+..+...... ...+..+..++..+.++++.-.+..+........+....+. ..+++..+.-|.
T Consensus 144 pVre~caq~L~~~l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLE 218 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence 7899999999988874333211 23457777888777787776666555544321111111111 134566777788
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCCh--hHHHHHHHHHHHHhcCChh--h-HHHHHhcCC
Q 007101 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSD--C-KVHIVQRGA 334 (618)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~--~-~~~l~~~~~ 334 (618)
+.+.+++..|+..+.-..+.-......-+ ..++..+...+..-+. .........+..++...+. . ...-.+.|+
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i-~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~L 297 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKI-AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGL 297 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHH-HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhcc
Confidence 88999999999988777544211111100 1123333333322111 0111122233334322211 1 111123588
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007101 335 VRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 335 ~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
+|.+...+++.=..++..++..+..+....
T Consensus 298 vp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 298 VPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999888889999999999887643
No 298
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=74.44 E-value=8.6 Score=32.62 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc--cccceecCCchHHHHHHhcC-CChhhhhhHHHHHHHhhhhhc
Q 007101 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKAT 521 (618)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~ 521 (618)
.++..|..-+.+.++.++..|+..|-.+..+-. ....+.....+..|+.++.. .++.|+......+...+....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 456677778888999999999999999874433 34455677889999999987 889999999999999887654
No 299
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.17 E-value=1.1e+02 Score=35.93 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc----CC---CHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHH
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~----~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 252 (618)
+++...+.++.++....-+ .+. .| -+.+.++++ .+ ...+.+.+..+|.-++.+.-.....-+-.++++
T Consensus 857 evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 6666667777776652221 111 12 233333332 12 234555666666666643211111111123445
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHh
Q 007101 253 TLILMLR-SEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 253 ~L~~ll~-~~~~~v~~~a~~~L~~l~ 277 (618)
.+....+ ..|..+-..|+..+++++
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHH
Confidence 5554443 345556666666666663
No 300
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=73.64 E-value=36 Score=32.86 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=49.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccH-HHHHhcCCHHHHHHhhc------------CCCHHHHHHHHHHHH
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR------------SEDSAIHYEAVGVIG 274 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~------------~~~~~v~~~a~~~L~ 274 (618)
.+|.++.++++.++.++..++.+|..+....+... ..+...|..+.+-+.+. ++...+...+.-+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 57999999999999999999999999996433322 23667777766555442 233456667777777
Q ss_pred HHh
Q 007101 275 NLV 277 (618)
Q Consensus 275 ~l~ 277 (618)
.|+
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 763
No 301
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=72.41 E-value=1.1e+02 Score=30.82 Aligned_cols=259 Identities=14% Similarity=0.131 Sum_probs=131.5
Q ss_pred chhHHHHHHHHHHHHhcCChhhHHHHHhCC---cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH
Q 007101 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (618)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g---~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (618)
++-++..+|+++|+.+..+++....+-+.- .+...+..+...+.+. .+....+++|..=-. .+ .+.
T Consensus 58 ~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K------~i~~~~l~~ls~Q~f-~~----~~~ 126 (372)
T PF12231_consen 58 FDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPK------SICTHYLWCLSDQKF-SP----KIM 126 (372)
T ss_pred cchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCC-CC----ccc
Confidence 344888999999999998887765554332 3455555554444321 666666777654332 11 122
Q ss_pred hcCChHHHHHhh---c--CCCHHHHHHHHHHHHHhhcCCcccHHHHHh-cC-CHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 007101 205 MEGGIPPLVELL---E--FTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN-ALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 205 ~~~~i~~L~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~-~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (618)
....+..++..+ . -++..+....+.++.++....+.. +.+ .+ -++.++..+-+....++..|..++..+.
T Consensus 127 ~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 127 TSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred chhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 233334444433 2 355678888889999998643332 322 22 4666776666777778887776665553
Q ss_pred cC---ChhHHH---HHHhcC---------CHHHHHHhhcCCChhHHHHHHH-HHHHHhcCChhhHHHHHhcCChHHHHHh
Q 007101 278 HS---SPNIKK---EVLAAG---------ALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (618)
Q Consensus 278 ~~---~~~~~~---~~~~~~---------~l~~L~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~l~~~~~~~~L~~l 341 (618)
.. +....+ ...+.. +.+.+..++.+.+......-+| ++--+. +++....--.-...+...-..
T Consensus 204 ~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~c 282 (372)
T PF12231_consen 204 KCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKC 282 (372)
T ss_pred HHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHH
Confidence 22 111111 111111 2233555565532222222222 222222 222111111112234444446
Q ss_pred hCCCCHHHHHHHHHHHHHhhc--C-CC-cchhhHhcCCHHHHHHhhcC-CCh----hHHHHHHHHHHHhh
Q 007101 342 LQSPDVQLREMSAFALGRLAQ--D-MH-NQAGIAHNGGLVPLLKLLDS-KNG----SLQHNAAFALYGLA 402 (618)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~--~-~~-~~~~l~~~~~l~~L~~ll~~-~~~----~v~~~a~~~L~~l~ 402 (618)
+.++++.+|..|..+=..+.. + ++ ........ ...|+...+.. ... +++..++..++++.
T Consensus 283 Fn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 283 FNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 678899999988877666543 1 11 11111111 22333333332 222 67778888888775
No 302
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.86 E-value=27 Score=27.22 Aligned_cols=68 Identities=24% Similarity=0.192 Sum_probs=51.9
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHH
Q 007101 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (618)
Q Consensus 331 ~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (618)
...++..|+.+...+.......+...+..+..++.....+.+-|+...|.++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34578889999998887788899999999999887777787878887766666656666655554444
No 303
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.30 E-value=62 Score=27.27 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=69.1
Q ss_pred CCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CcccHHHHHhcCCH
Q 007101 173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNAL 251 (618)
Q Consensus 173 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~ 251 (618)
....++|......+..+.. . .... ..++..+..-+.++++.++..|+..|-.+... .......+...+++
T Consensus 13 ~l~~~dw~~ileicD~In~--~-~~~~------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 13 SNREEDWEAIQAFCEQINK--E-PEGP------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFL 83 (139)
T ss_pred cCCCCCHHHHHHHHHHHHc--C-CccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHH
Confidence 3344556666666666632 1 1111 23567888899999999999999999888763 24456677778889
Q ss_pred HHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 007101 252 PTLILMLRS------EDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 252 ~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 278 (618)
..|++++.. .+..|+..++..+...+.
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999963 467899999988888754
No 304
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=70.83 E-value=1.2e+02 Score=30.56 Aligned_cols=290 Identities=15% Similarity=0.107 Sum_probs=150.3
Q ss_pred hhhhHHHHHHHHHHhhccccc-----hHHhHHHHHHHHHHHHHhccChhhHHHHHhCC---CHHHHHHhhcCCCCCcccc
Q 007101 52 RQALLSEVSAQVNVLNTTFSW-----LEADRAAAKRATHVLAELAKNEEVVNWIVEGG---AVPALVKHLQAPPTSEADR 123 (618)
Q Consensus 52 ~~~~~~~v~~l~~~l~~~~~~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~v~~Lv~lL~~~~~~~~~~ 123 (618)
.+.+...++.+.+.++..... +..+..+...|++.|..+..+++....+-..- .+...+..+.+++.+.
T Consensus 30 ~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K--- 106 (372)
T PF12231_consen 30 RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPK--- 106 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCH---
Confidence 344556666666666654432 22366788899999999988877666555432 4556666676655421
Q ss_pred CCCcchhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHH
Q 007101 124 NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (618)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 203 (618)
.+....+++|..=...+. ++....+..++..+..-.+.-.. ..+....+.++.++....|..-..-
T Consensus 107 -------~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s---~si~~erL~i~~~ll~q~p~~M~~~ 172 (372)
T PF12231_consen 107 -------SICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPS---KSIISERLNIYKRLLSQFPQQMIKH 172 (372)
T ss_pred -------HHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777765443333 33444566666666554431111 1788889999999988666432111
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc---HHH---HHh----cC-----CHHHHHHhhcC-CCHHHHH
Q 007101 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQ---IVE----CN-----ALPTLILMLRS-EDSAIHY 267 (618)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~---~~~----~~-----~~~~L~~ll~~-~~~~v~~ 267 (618)
....++.++..+-+....++..|...+..+...-+.. ... ..+ .+ +.+.|..++.+ ++.....
T Consensus 173 -~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~ 251 (372)
T PF12231_consen 173 -ADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAM 251 (372)
T ss_pred -HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHH
Confidence 1236677777776777777776666555554211111 111 111 11 12234455555 3322233
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHh---cCChhhHHHHHhcCChHHHHHhhCC
Q 007101 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA---ATDSDCKVHIVQRGAVRPLIEMLQS 344 (618)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~---~~~~~~~~~l~~~~~~~~L~~lL~~ 344 (618)
....++..+. +++....--.-...+...-.++.++++.++..|..+-..+. ..++......... +..++...++.
T Consensus 252 ~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~ 329 (372)
T PF12231_consen 252 QIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRR 329 (372)
T ss_pred HHHHHHHHHh-CCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCc
Confidence 3333333333 22211111111123444455667778888887776544443 1111111111111 22333334443
Q ss_pred -CCH----HHHHHHHHHHHHhh
Q 007101 345 -PDV----QLREMSAFALGRLA 361 (618)
Q Consensus 345 -~~~----~v~~~a~~~L~~l~ 361 (618)
... .++..+...++++.
T Consensus 330 ~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 330 EKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred cccccccHHHHHHHHHHHhchH
Confidence 222 66777777777765
No 305
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=70.73 E-value=18 Score=28.64 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhh
Q 007101 467 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD 508 (618)
Q Consensus 467 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (618)
..+..+..++..++....+++.|+++.|+.+|.+.|.++...
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 467788889999998889999999999999999999887543
No 306
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.50 E-value=43 Score=32.29 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=37.6
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH-HHHHhcCCHHHHHHh
Q 007101 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGL 299 (618)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~l 299 (618)
-++|.++.++.+.+++++..++.+|..+....+... ..+...|....+-..
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~a 170 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDA 170 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHH
Confidence 358899999999999999999999999987654422 225566665544443
No 307
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=69.61 E-value=1.6e+02 Score=31.58 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhc---CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHH
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRME---GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 256 (618)
+++..|+.+|.-+..+.......+... ..+..++..+. .++..+..++++|.|+-. ++..++.+... ...++.
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSR--LESILD 634 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHH--HHHHhh
Confidence 667778888877776554433322212 23334444443 557778889999999987 47777666553 333332
Q ss_pred hh----cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC-----ChhHHHHHHHHHHHHhcCChhhHH
Q 007101 257 ML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKV 327 (618)
Q Consensus 257 ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~ 327 (618)
.+ ..++..++........|++..- .+.-.+.+..+.+..++... +.+.....+.+|++++..+. ...
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~-~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA-SVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH-HHH
Confidence 22 2233445544444444442210 01111134455555444322 23345567779999986543 444
Q ss_pred HHHhcCChHHHHHhhCC
Q 007101 328 HIVQRGAVRPLIEMLQS 344 (618)
Q Consensus 328 ~l~~~~~~~~L~~lL~~ 344 (618)
.+...--+..++.-+++
T Consensus 711 ~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 45555566777776664
No 308
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.41 E-value=2.8e+02 Score=34.07 Aligned_cols=249 Identities=15% Similarity=0.062 Sum_probs=115.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhH-HHHHHHHHHHHhcCChhhHHHH
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHI 329 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-~~~a~~~L~~l~~~~~~~~~~l 329 (618)
...++..+...++..+-.+..+++.++...++. .+ -.+....++.-+.+..+.+ |..-..+++.+-.........-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 444556666788888888888888886543321 11 1123344444454444333 3333334444432111111111
Q ss_pred HhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcch
Q 007101 330 VQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 408 (618)
Q Consensus 330 ~~~~~~~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (618)
.....+..++.+.+++ .|.|+.+++.++.-+......-....-...+..+..++-+..+. .......+.....++...
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~-~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTS-HVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcc-hhhhhhhhccccccchhH
Confidence 1123466777777775 55999999999988876432222222222333344444332221 111111222111111111
Q ss_pred hHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecC
Q 007101 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 488 (618)
Q Consensus 409 ~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 488 (618)
..+...-+-+ | .++..-. -........+-...-++.++++.++.++..++.++..-... .+.-.
T Consensus 1034 ~alittlgpe-L-~~N~~~d------------~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~ 1097 (2067)
T KOG1822|consen 1034 DALITTLGPE-L-GPNGDKD------------STSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLD 1097 (2067)
T ss_pred HHHHHhcccc-c-CCCCccc------------chhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHH
Confidence 1222211111 0 0000000 00011222333344455667899999999999987422111 11123
Q ss_pred CchHHHHHHhcCCChhhhhhHHHHHHHhhhh
Q 007101 489 GGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (618)
Q Consensus 489 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 519 (618)
-.++.|..++.+..--.|.....++..+.+.
T Consensus 1098 ~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1098 SLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 3567777777666555555555555555443
No 309
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=69.27 E-value=1.1e+02 Score=32.47 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHh--hcc-CCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcC
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK--RHM-DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~--~~~-~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 207 (618)
+|...|-..|-.+..+-+ +...+..|..+.. ... ..........++...+..|..=.. ..-....
T Consensus 252 ~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~~~~~ 319 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AATSFPN 319 (501)
T ss_pred hHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHhCCcc
Confidence 888899999988883322 2234666666666 211 111112223555555555443111 0011123
Q ss_pred ChHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCCcccHHHH----HhcCCHHHHHH----hhcCCCHHHHHHHHHHHH
Q 007101 208 GIPPLVELLEFT--DTKVQRAAAGAL---RTLAFKNDENKNQI----VECNALPTLIL----MLRSEDSAIHYEAVGVIG 274 (618)
Q Consensus 208 ~i~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~----~~~~~~~~L~~----ll~~~~~~v~~~a~~~L~ 274 (618)
.+..+...+.++ +..++..++..+ .....+.+...-.. +..++.+.+-. -....+...|..+-.+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 444555555555 567777776666 44443322222222 22333333310 011346788999999999
Q ss_pred HHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 007101 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (618)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 320 (618)
.|+...+..- .-+-+.+..|..-|.....+++...-.+|..++.
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9988766531 1134577888888888888888888778888763
No 310
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.69 E-value=45 Score=33.18 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=62.8
Q ss_pred CHHHHHHhhcCC-------ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC----------CCCHHHHHHHH
Q 007101 292 ALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------SPDVQLREMSA 354 (618)
Q Consensus 292 ~l~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~----------~~~~~v~~~a~ 354 (618)
++|.++.++... +.......+..+..|. .++.......-+.++|.++.++- ..+..+|..|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 567777776532 3334444555555564 33443333333447788887662 24568999999
Q ss_pred HHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHh
Q 007101 355 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGL 401 (618)
Q Consensus 355 ~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l 401 (618)
..|..++........-+....+..+.+.+.++ .......|+..|..|
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999997443333233444455666666543 223356666666655
No 311
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.81 E-value=2.3e+02 Score=32.56 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=94.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhh-HHHHHhcCChHH
Q 007101 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRP 337 (618)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~~~~~~ 337 (618)
++-.+++|..|+.-|+.....-| ..+++...+..+--.|.+.+.++|..++.+|..|...+... .....-..+=..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 46689999999999998876665 45667778888888899999999999999999998654332 222333445566
Q ss_pred HHHhh-CCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007101 338 LIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 338 L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
++++. .+-+..|+..+...+..+.. ..++...-+..+..++.+.+..++..|...|..=.
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~-----~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSS-----SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhc-----ccccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 77776 44566666555444333322 12233344667888888889999888888776543
No 312
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=67.35 E-value=1.4e+02 Score=36.84 Aligned_cols=132 Identities=9% Similarity=0.101 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcC----ChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhc
Q 007101 131 EVEKGSAFALGLLAV----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 206 (618)
.+...|...|..++. .++.-..-.+...+.++..++...... ++++..+.++.++...... -+..
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~-------eVrE~ILeCv~qmI~s~~~----nIkS 1220 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV-------EIRELIIRCVSQMVLSRVN----NVKS 1220 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHHh----hhhc
Confidence 677888888888871 222111122345678888888765543 8999999999998763321 2223
Q ss_pred CChHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCcc-----cHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 007101 207 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDE-----NKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNL 276 (618)
Q Consensus 207 ~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l 276 (618)
| =+.+..++. +.++.+...|-..+..+..+.-. ....+. .++..|..+.+.. +.++-..|+..|+++
T Consensus 1221 G-WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1221 G-WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred C-cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 4 344444443 45677888888888877642110 011222 2345555555433 456667777777755
No 313
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=67.32 E-value=64 Score=37.23 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 007101 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL 342 (618)
..|++.++++|..+..+-... .....+..+.+++..+.|+++...+..+....+...+... ..-..+++..+.-|
T Consensus 143 apVre~caq~L~~~l~~~~~s----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDES----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhH----hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 368999999998886552211 1123567788888888888877666555444321111111 11134667788888
Q ss_pred CCCCHHHHHHHHHHHHHhhcC
Q 007101 343 QSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~ 363 (618)
.+.+.+++..|+..+...+..
T Consensus 218 ~ds~ddv~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 218 EDSDDDVRSVAAQFLVPAPSI 238 (1549)
T ss_pred hhcchHHHHHHHHHhhhhhHH
Confidence 899999999988888777653
No 314
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=66.77 E-value=3e+02 Score=33.47 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=46.7
Q ss_pred CChHHHHH----hhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 007101 333 GAVRPLIE----MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 333 ~~~~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (618)
..++.++. +|.+.++.++..+......+-...+. ..+..++..|+..+-+++..-...|+.+|..|+..
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 45555555 45788999999988888877654421 23334677788888666665557899999999853
No 315
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=66.74 E-value=1.6e+02 Score=30.29 Aligned_cols=232 Identities=10% Similarity=0.064 Sum_probs=107.6
Q ss_pred HHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccc
Q 007101 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (618)
Q Consensus 100 ~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~ 178 (618)
.+....+..|+.++.+++. .-|......|.++- .....|..+. ......+.+.+......
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~------------rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~------ 189 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDP------------RERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERH------ 189 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTH------------HHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--------
T ss_pred HcCHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccc------
Confidence 3444556777787777666 66777777777766 3334443332 23344555555544332
Q ss_pred hHHHHHHHHHHHHhhhcCc-hhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHH
Q 007101 179 NSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256 (618)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 256 (618)
.-...++.+++.+..+-. +.+.... .=....++.+.+.+. ......-..++..+...++.....++ ..+++
T Consensus 190 -~gI~elLeil~sii~gf~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk 262 (409)
T PF01603_consen 190 -NGIAELLEILGSIINGFAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLK 262 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHH
T ss_pred -cCHHHHHHHHHHHHhccCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHH
Confidence 223445556666555322 1111100 001233444444433 12233344555555544444332222 22333
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh--cCC
Q 007101 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGA 334 (618)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~ 334 (618)
.--..++.=...-+.-+..+...-+...-.-+...+...+..++.+.+..+.+.|+..+.| +.....+.+ ..+
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i 337 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVI 337 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHH
Confidence 3223344333334444455544322221222223356777788888888888777754322 222211111 124
Q ss_pred hHHHHHhhCC-----CCHHHHHHHHHHHHHhhc
Q 007101 335 VRPLIEMLQS-----PDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 335 ~~~L~~lL~~-----~~~~v~~~a~~~L~~l~~ 362 (618)
+|.+...|.. -+..++..+..++.-+..
T Consensus 338 ~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 338 LPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5666665432 256777777777777665
No 316
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=66.42 E-value=1.4e+02 Score=30.97 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHH-HHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHh
Q 007101 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (618)
Q Consensus 221 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 299 (618)
...|..++.+|+.++..-+...-. .... .|+..|++....-|..+.-+|...+...........-..+.+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 366778888898888642222111 1122 58888888888778888888888866533211110012245667777
Q ss_pred hcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 007101 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (618)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~ 334 (618)
|..+....-.+....+..+-..+......+.+.|.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77554444555555555555444445555566666
No 317
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=66.08 E-value=1.4e+02 Score=29.29 Aligned_cols=140 Identities=21% Similarity=0.131 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHhhhcCchhhHHHHhcC-----------ChHHHHHhhc------CCCHHHHHHHHHHHHHhhcCCccc
Q 007101 179 NSVIRRAADAITNLAHENSSIKTRVRMEG-----------GIPPLVELLE------FTDTKVQRAAAGALRTLAFKNDEN 241 (618)
Q Consensus 179 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-----------~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~ 241 (618)
.++|..|+.++...+.++++.+..+...- ....|+..|- +.|+--...|+.+|.++..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 38889999999999998898888776431 1113444443 345555667889999999888877
Q ss_pred HHHHHhc------------CCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhcCChhHHHHHHhcC-CHHHHHHhhcCC
Q 007101 242 KNQIVEC------------NALPTLILMLR-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIGLLSSC 303 (618)
Q Consensus 242 ~~~~~~~------------~~~~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~ll~~~ 303 (618)
++.+..- ..++.+..+|. ..++.++..-+..|.....+++.....++..+ .++.|+......
T Consensus 132 Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~ 211 (312)
T PF04869_consen 132 KEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQS 211 (312)
T ss_dssp HHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--
T ss_pred HHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcC
Confidence 7765432 11444554443 34566777777777777788888778887654 688888875322
Q ss_pred ---ChhHHHHHHHHHHHH
Q 007101 304 ---CSESQREAALLLGQF 318 (618)
Q Consensus 304 ---~~~~~~~a~~~L~~l 318 (618)
+.-++--++..|+-+
T Consensus 212 ~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 212 SSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp TCCCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHH
Confidence 233444444444444
No 318
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=65.86 E-value=92 Score=27.57 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=56.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHH
Q 007101 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (618)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (618)
-.++.+++-|...+...+..|...+..+.......+-.-+-..++.++...|.+.++++...++.+|..+...++.....
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 45777888787777777777777777776552222222223457788889999999999999999999996554444333
No 319
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=65.57 E-value=2.3e+02 Score=36.08 Aligned_cols=267 Identities=15% Similarity=0.112 Sum_probs=131.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcC--CHHHHHHhh-----cCCCHHHHHHHHHHHHHHhcCChhHH
Q 007101 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILML-----RSEDSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
+...+...+++++..+...+..+... ..+........ .+..++..+ .++++.++......+. ...-
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~-~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~ 558 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKY-DIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFD 558 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhh-hhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchh
Confidence 45566677889998887666666542 22211111111 122222222 2556665544433332 2222
Q ss_pred HHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 007101 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 364 (618)
..+...+.+..+...+.+.....+..+...+++++..++.........-.+..+-.+-.+.-..+......-+..+....
T Consensus 559 ~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 559 AQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred hhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 33444556666777777777788888999999998776633222211111111111222222222222222222222211
Q ss_pred CcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHH
Q 007101 365 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (618)
Q Consensus 365 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 444 (618)
.......-...+..++..+.+.++.+...+..++..||...... +....
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~--------~~~~~----------------------- 687 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE--------MVKWV----------------------- 687 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccch--------hhhcc-----------------------
Confidence 11111112233455666777778888888888888887443210 00000
Q ss_pred HhhhhHHHHHHHH-hhCCHhHHHHHHHHHHhhcCCCcc--ccceecCCchHHHHHHhcC-CChhhhhhHHHHHHHhhh
Q 007101 445 IHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 445 ~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 518 (618)
...++.+...+ ..++..-+..+.++++++.....- .......-++..|+..+.. ....++.++...+.++..
T Consensus 688 --~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 688 --DELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred --chHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 01222222222 334667778889999999765542 1122233445555555543 344556666666654433
No 320
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=64.96 E-value=9.9 Score=30.04 Aligned_cols=39 Identities=33% Similarity=0.342 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCC
Q 007101 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (618)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~ 118 (618)
....+..+..++..|+.=..+++.|+++.|+.+|.+.+.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 356678888889999998999999999999999999887
No 321
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=63.11 E-value=30 Score=31.48 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=53.7
Q ss_pred hhHHHHHhCCcHHHHHHHHhhccCCC----------CcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc
Q 007101 148 EHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (618)
Q Consensus 148 ~~~~~~~~~g~l~~L~~lL~~~~~~~----------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (618)
..+..+...|++..++.+|+...... ......++...|...|..+|.++..++..+... ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 45677778899999999998866543 011123678899999999999998888877642 333333332
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 007101 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 218 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (618)
......-..+..++..+..++.+....+.+.. +..++.++...... ..-+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr~--~~~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGRQ--PRYLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCCC--hHHHHHHhhhcc
Confidence 22211123456677777777777777766554 88888888753322 223445555544
No 322
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.74 E-value=11 Score=36.37 Aligned_cols=64 Identities=19% Similarity=0.098 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCcccHHHHHh
Q 007101 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (618)
Q Consensus 184 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 247 (618)
...+.+++||..++..+..+.+.||++.++.-+. +.+|-+++....++.+|..++.++++.+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 3677999999999999999999999999888664 466899999999999999988888777654
No 323
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=62.64 E-value=60 Score=27.08 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=56.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhc
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSED--SAIHYEAVGVIGNLVH 278 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~a~~~L~~l~~ 278 (618)
++..|..-+.++++.++..|+..|-.+.... ......+...+++..|..++.+.. +.|+..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999998742 445566777888999999888543 3489988888888754
No 324
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.32 E-value=1.2e+02 Score=26.92 Aligned_cols=77 Identities=22% Similarity=0.132 Sum_probs=52.1
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007101 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
..+|.+.+-|..... ..+..|...+..+.......+-.-.-...+.++-..|.+.++++...++.+|..|+.
T Consensus 38 ~~Lpif~dGL~Et~~--------Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRETEH--------PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhccCc--------cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 457777777777766 556667777777766422222222224566777788888999999999999999965
Q ss_pred CCccc
Q 007101 237 KNDEN 241 (618)
Q Consensus 237 ~~~~~ 241 (618)
..+..
T Consensus 110 ~~~~v 114 (183)
T PF10274_consen 110 SSDMV 114 (183)
T ss_pred hhhhh
Confidence 33333
No 325
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=60.84 E-value=2e+02 Score=29.47 Aligned_cols=217 Identities=12% Similarity=0.056 Sum_probs=113.3
Q ss_pred ccchHHHHHHHHHHHHhhhcCchh-hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHH
Q 007101 176 RAVNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254 (618)
Q Consensus 176 ~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 254 (618)
.+.|.=...+-..|..+....+.. .+.......+..|+.++.++|+.-|......|..+-......+..+.. .+...+
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~ 179 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIF 179 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHH
Confidence 344555555666666665532211 112333456788999999999999999999999887644555544443 355566
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHhcCCh-hHHHHHHhcCCHHHHHHhhcCCChh-HHHHHHHHHHHHhcCChhhHHHHHh
Q 007101 255 ILMLR-SEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSE-SQREAALLLGQFAATDSDCKVHIVQ 331 (618)
Q Consensus 255 ~~ll~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~l~~ 331 (618)
.+.+. ..........++.++.+..+.. ..++... .-....++.+....... .......++..+...++.....+
T Consensus 180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-- 256 (409)
T PF01603_consen 180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-- 256 (409)
T ss_dssp HHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH--
T ss_pred HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH--
Confidence 66665 3344456677888888866522 1111100 00123344444444322 24455556666655555443322
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-chhhHhcCCHHHHHHhhcCCChhHHHHHHHHHH
Q 007101 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 399 (618)
Q Consensus 332 ~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 399 (618)
+..++..-...++.-...-+.-+..+...-+. .-.-+.......+..++.+.+..|.+.|+..+.
T Consensus 257 ---i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 257 ---IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp ---HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred ---HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 34444444445555555555555555543221 111122234455777788888888887776553
No 326
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=60.52 E-value=1.3e+02 Score=26.95 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=56.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhH
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (618)
.++.+++++.+++..++..|+..+..+....=-+ -...+|.++.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 5677888888999999999999999887531111 1235889999999999999999999999997665544
No 327
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.50 E-value=1e+02 Score=25.64 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=58.3
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCC
Q 007101 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQDM 364 (618)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~l~~~~~~~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~ 364 (618)
++..|..-|.++++.++..|+.+|..+...+.. ....+....++..|+.++.. .++.|+..+...+.+.+...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466788888889999999999998888866654 55666666788889998875 58899999999999887643
No 328
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=58.95 E-value=85 Score=24.53 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=49.5
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 007101 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV 272 (618)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 272 (618)
....+..|++..+.++......++..+..+.. .+.....+.+-|+++.|-++-..-++..+...-..
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34456777888888877788889999999987 67788888888988887776665566555444333
No 329
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.86 E-value=43 Score=28.36 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=58.2
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC
Q 007101 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~ 363 (618)
++..|.+-|.+.++.++..|+..|..+...+ ......+...+++..|..++.. .++.|+..++..+.+.+..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 5667788888888999999998888887654 4466677788899999998874 7889999999999988754
No 330
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=58.68 E-value=1.4e+02 Score=31.56 Aligned_cols=169 Identities=19% Similarity=0.083 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHhc
Q 007101 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 248 (618)
++...+-..|..+...-+ +...+..|..+.. ..++.+|...+..|..=.. . .-...
T Consensus 252 ~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----A--a~~~~ 318 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----A--ATSFP 318 (501)
T ss_pred hHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----H--HhCCc
Confidence 677777777777765311 1223344444433 1346677655555443211 0 00112
Q ss_pred CCHHHHHHhhcCC--CHHHHHHHHHHH---HHHhcCChhHHH----HHHhcCCHHHHHH----hhcCCChhHHHHHHHHH
Q 007101 249 NALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSPNIKK----EVLAAGALQPVIG----LLSSCCSESQREAALLL 315 (618)
Q Consensus 249 ~~~~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~~~~----~~~~~~~l~~L~~----ll~~~~~~~~~~a~~~L 315 (618)
..+..+..-+.+. +..++..++..+ ...........- ..+..++.+.+-. --...+...+..+..+|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 3344444445554 556777776666 444333222222 2223344443310 01123456788899999
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007101 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
+.++...+... .-+.+++..|.+-|.++.++++...-.+|..|+..
T Consensus 399 G~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 399 GLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 99997766542 12356788899988889999999999999998763
No 331
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=58.60 E-value=5.1e+02 Score=33.33 Aligned_cols=160 Identities=20% Similarity=0.162 Sum_probs=90.3
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 007101 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (618)
Q Consensus 244 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (618)
.....+.+..+...+.++.-.++..+...+++++..++...-.-+..-.+..+..+-.+....+....+.-+..+....+
T Consensus 560 ~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 34555667777888888888999999999999988777432222222222222222222222222222222222211111
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcch-hhHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHh
Q 007101 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGL 401 (618)
Q Consensus 324 ~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l 401 (618)
...... -...+..++..+.+++..+...+..++..||....... ..++ ..+..+.+.+. ..+..-+.++.+++.++
T Consensus 640 ~~i~~~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 640 VLISPY-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHHhh-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 111111 13345667777788888898999999999987543211 1222 33444555443 34566678899999999
Q ss_pred hcCC
Q 007101 402 ADNE 405 (618)
Q Consensus 402 ~~~~ 405 (618)
....
T Consensus 718 ~s~~ 721 (2341)
T KOG0891|consen 718 ESST 721 (2341)
T ss_pred hccc
Confidence 7554
No 332
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.24 E-value=3.9e+02 Score=31.88 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=53.1
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007101 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 290 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
.+++|.|-.-|.+.+..+|..|...++.+.+.... ...-........++.-+.+.+..||..++....++..+
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~-~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS-QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh-hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 45889999999999999999999999999754322 21111234556666667788889999988888776554
No 333
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=56.82 E-value=69 Score=35.83 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 007101 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (618)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~l 341 (618)
+.++..++-+|+++|.......+ ..+|.|++=|..+ ...+|.+...+++.+|... ...-...+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHH
Confidence 34678888889998876554322 2578888877755 3445666666667666332 12234578999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcC--CHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007101 342 LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 342 L~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
|.++++-+|..+...|.+|.+..--+ -.| .+..++.++ +.++.++..|-..+..+.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 99999999999999999997643211 111 122233333 346677776666666654
No 334
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.69 E-value=31 Score=29.01 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=57.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc--chhhHhcCCHHHHHHhhcC------CChhHHHHHHHHHHHhhcC
Q 007101 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 334 ~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 404 (618)
.+..+..-|.++++.++..|+..|-.+..+... +..+...+++..|++++.. .+..|+..++..+...+..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999998875433 4667777888889999853 4789999999999988744
No 335
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.63 E-value=1e+02 Score=25.89 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=55.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCHHHHHHhhcC-CCHH---HHHHHHHHHHHHhcC
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSA---IHYEAVGVIGNLVHS 279 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~-~~~~---v~~~a~~~L~~l~~~ 279 (618)
++..|..-|+++++.++..|+..|-.+.... +.....+....++..|..++.+ .... |+..++..|...+..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999888743 3455667777788889988874 3333 888888888777543
No 336
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=56.36 E-value=26 Score=30.30 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=40.5
Q ss_pred CCeEEehhHHHHhcCCHHHHHhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhC
Q 007101 557 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFDEF 610 (618)
Q Consensus 557 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt 610 (618)
+|+.|.+-..+.. .|..++.++...--......|.+++|+..+|..+++|+|.
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~ 65 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKK 65 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHH
Confidence 6788888877755 7888888886421122225899999999999999999997
No 337
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=56.01 E-value=2.2e+02 Score=28.31 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 007101 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (618)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L 338 (618)
.+++...+.++++..+..........-.....-..++.++.++ .+++|+.|..++..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 4556677777777777655332211111223456678888777 8999999999999988666653 223344555
Q ss_pred HHhhC
Q 007101 339 IEMLQ 343 (618)
Q Consensus 339 ~~lL~ 343 (618)
-.++.
T Consensus 250 ~~~l~ 254 (339)
T PF12074_consen 250 WKWLS 254 (339)
T ss_pred HHHHH
Confidence 55554
No 338
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.84 E-value=3.4e+02 Score=32.24 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 210 (618)
+++.....++.++...+.. ..-+| -+.+.+.++.-.+.. .+.--++.+.+..+|.-++.+.-..-..-.-.+.+.
T Consensus 857 evr~~sl~~l~silet~ge---~ll~~-w~sV~eml~s~~d~~-~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE---HLLHG-WQSVFEMLRSATDFG-SEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch---hhccc-cHHHHHHHHHHhhcc-chhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 7777888888877743331 11222 455555554322211 000115666677777666653322211122234555
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 007101 211 PLVELLEF-TDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 211 ~L~~ll~~-~~~~v~~~a~~~L~~l~~ 236 (618)
.+..+.+. .|-.+...|.+.+++++.
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHH
Confidence 55555543 556677777777777763
No 339
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=54.77 E-value=23 Score=31.81 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=46.8
Q ss_pred ccEEEEECCeEEehhHHHHhcCCH--HHHHhhcCCC---CCCCCCceecCCCCHHHHHHHHHHHhCCccccC
Q 007101 550 SDVTFLVEGRRFYAHRICLLASSD--AFRAMFDGGY---REKDARDIEIPNIRWEVFELMMRFDEFCAFNLS 616 (618)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s~--~f~~~~~~~~---~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~ 616 (618)
+-|.+-++|+.|..-+.-+..+-| ...+||.+.- ++...+.+ +-|-+|.-|+.+|.|+-.|++...
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~-lIDRsp~yFepIlNyLr~Gq~~~~ 79 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAV-LIDRSPKYFEPILNYLRDGQIPSL 79 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceE-EEccCchhhHHHHHHHhcCceeec
Confidence 456777888888777666665554 6788997732 23333344 447889999999999999988654
No 340
>PRK09169 hypothetical protein; Validated
Probab=54.37 E-value=5.6e+02 Score=32.52 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHH
Q 007101 262 DSAIHYEAVGVIGNL 276 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l 276 (618)
++.-..+++++|+.+
T Consensus 371 npQelANaLnALSKw 385 (2316)
T PRK09169 371 NAQELANALNALSKW 385 (2316)
T ss_pred CHHHHHHHHHHHHcC
Confidence 444455666666655
No 341
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=53.01 E-value=23 Score=19.87 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHh
Q 007101 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (618)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~ 167 (618)
||..|+++|+++.+. .+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd~----------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHhc
Confidence 578899999988752 23677776665
No 342
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=52.44 E-value=2.1e+02 Score=26.97 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhccccchH-----HhHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcch
Q 007101 55 LLSEVSAQVNVLNTTFSWLE-----ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (618)
Q Consensus 55 ~~~~v~~l~~~l~~~~~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~ 129 (618)
+...+|.++.+|........ ++......|+..|+. +.+..+.|.++++++.++..... .+.
T Consensus 29 ~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq----------~re~~A~~~li~l~~~~~~~~~~----l~G 94 (249)
T PF06685_consen 29 REEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQ----------FREERALPPLIRLFSQDDDFLED----LFG 94 (249)
T ss_pred HHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHH----------HhhhhhHHHHHHHHcCCcchHHH----HHc
Confidence 34456667777766532111 111123444554443 33456789999999766541000 000
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHH
Q 007101 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204 (618)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 204 (618)
--+-+...++|.. +..|-+..|..++.+..... -++..|+.+|..+...++..|..+.
T Consensus 95 D~~tE~l~~ilas-----------v~~G~~~~L~~li~~~~~~~------yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 95 DFITEDLPRILAS-----------VGDGDIEPLKELIEDPDADE------YVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred chhHhHHHHHHHH-----------HhCCCHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 0112222223322 33566888888888876532 5777889999999998887777665
No 343
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=52.40 E-value=2.3e+02 Score=27.53 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhcCCcccH---------------------HHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhc
Q 007101 222 KVQRAAAGALRTLAFKNDENK---------------------NQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 222 ~v~~~a~~~L~~l~~~~~~~~---------------------~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 278 (618)
.++..-++.+..++....... ..--+.|.+..++..+.. .+...+-+-+.++-.+.+
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 467777888888886321111 111235777778877663 356778888889988888
Q ss_pred CChh--HHHHHHhcCCHHHHHHhhcCCC---hhHHHHHHHHHHHHhcCChhh
Q 007101 279 SSPN--IKKEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 279 ~~~~--~~~~~~~~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~ 325 (618)
+.+. .+..+.+.|+++.++..+-++. .++.....-.|+.+...+...
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHH
Confidence 7555 3345668999999998887553 345666777888887665543
No 344
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=51.01 E-value=2.6e+02 Score=29.43 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=73.4
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC----------CCHHHHHHH
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAA 227 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a 227 (618)
.+|.++.++...-.......+.....+.+..++.|.. ++...-.-.-+..+|.++.++-+ ..+.+|..|
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA 318 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA 318 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence 3677777777654433222334667777777787777 65544333334566777666532 247899999
Q ss_pred HHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 007101 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 276 (618)
Q Consensus 228 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l 276 (618)
+..+..++......... ....++..+.+.+.+. .....+-++..|..+
T Consensus 319 A~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 99999998744333333 3345667777776654 456677777777776
No 345
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=50.97 E-value=40 Score=30.69 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhh
Q 007101 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (618)
Q Consensus 221 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 300 (618)
..+...+...|..++.++..++..+.+. ++.++..+.......-..+..++..+..++......+.+. .+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 4677889999999999988898888775 4544443333222222345667777777777665555443 477788887
Q ss_pred cCC
Q 007101 301 SSC 303 (618)
Q Consensus 301 ~~~ 303 (618)
...
T Consensus 152 ~~~ 154 (207)
T PF01365_consen 152 RKH 154 (207)
T ss_dssp ---
T ss_pred HHc
Confidence 763
No 346
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=50.51 E-value=2.2e+02 Score=31.96 Aligned_cols=139 Identities=20% Similarity=0.156 Sum_probs=79.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHh-c
Q 007101 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-A 290 (618)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~ 290 (618)
+...+..++..+....+.++.+++.-..-.... ...-++.-..-.+..-..+......+|..++..+++....+.. .
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 334444555666666666666665311111000 0011111111111222346777788899998888877777764 6
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
+....++.++-+++.++...|...|...... +. -.+.+-.+++..-........+.|.++..
T Consensus 524 ~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~--~~--------R~e~i~~ll~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 524 DAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV--DG--------RLEAIQALLQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred chhhHHHhheeCCChHHHHHHHHHHHHHhcC--Cc--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999998632 22 22333344444333344455555555544
No 347
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.63 E-value=23 Score=34.38 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 227 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
..+.++++|...+++++.+.+.|+++.++.-.. +.+|-+++..+-|+.+|..++..+++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 567899999999999999999999998887543 77899999999999999988877755443
No 348
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.38 E-value=1.9e+02 Score=25.75 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=83.4
Q ss_pred cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007101 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (618)
Q Consensus 158 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 237 (618)
.++.++++....+. .++..|+.++..+....-.+. ..++|.++.+..++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~--------~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDD--------SVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 35666776666655 888889988887765332221 23679999999999999999999999999875
Q ss_pred CcccHHHHHhcCCHHHHHHh---hcCC-CHHH---HHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCC------
Q 007101 238 NDENKNQIVECNALPTLILM---LRSE-DSAI---HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC------ 304 (618)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~l---l~~~-~~~v---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~------ 304 (618)
.+.....-...| +..-... +..+ .... ...-+..+..+..++...+..+ +..+++.+....
T Consensus 76 ~~s~v~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~ 149 (187)
T PF12830_consen 76 HESLVESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSE 149 (187)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccc
Confidence 444433322223 2222222 1111 1111 4455566666666555554443 445555554421
Q ss_pred --hhHHHHHHHHHHHHh
Q 007101 305 --SESQREAALLLGQFA 319 (618)
Q Consensus 305 --~~~~~~a~~~L~~l~ 319 (618)
.........+..|++
T Consensus 150 ~~~~~l~~~~Fla~nLA 166 (187)
T PF12830_consen 150 SSPSDLDFLLFLAENLA 166 (187)
T ss_pred cchhHHHHHHHHHHHHh
Confidence 222344555555555
No 349
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=49.23 E-value=2.8e+02 Score=27.54 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcC-chhhHHHHhcCCh
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGI 209 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~i 209 (618)
+-|.....+|..+... . +...++..+..++..+.++ ......+.++..=+..- .+. ....+
T Consensus 2 d~r~~~~~~L~~l~~~-~-----~s~~i~~~l~~~~~KE~nE-------~aL~~~l~al~~~~~~~~~~~-----~~~~~ 63 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSS-S-----LSSKIVQGLSPLLSKESNE-------AALSALLSALFKHLFFLSSEL-----PKKVV 63 (339)
T ss_pred cHHHHHHHHHHhCCCc-c-----hHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHHHHHhCcCC-----CHHHH
Confidence 3455666677766641 1 2233467777777776553 44555555554433211 111 12345
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCccc--HHHHHhcCCHHHHHHhhc----CCCHHH----HHHHHHHHHHHhcC
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDEN--KNQIVECNALPTLILMLR----SEDSAI----HYEAVGVIGNLVHS 279 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~~L~~ll~----~~~~~v----~~~a~~~L~~l~~~ 279 (618)
..+..-+++..+.+|+.-+..+..+.. ...+ ...++ ..+++.|++.++ ++-+.. ...+.-.+. +...
T Consensus 64 ~~~~kGl~~kk~~vR~~w~~~~~~~~~-~~~~~~~~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~ 140 (339)
T PF12074_consen 64 DAFKKGLKDKKPPVRRAWLLCLGEALW-ESPNSDSLKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSW 140 (339)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHh-hccCchHHHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccc
Confidence 666677777777788877777777764 1111 12222 235677777664 222221 112222222 1111
Q ss_pred -ChhHHH-HH----HhcCCHHHHH---HhhcC-CChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC--CH
Q 007101 280 -SPNIKK-EV----LAAGALQPVI---GLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DV 347 (618)
Q Consensus 280 -~~~~~~-~~----~~~~~l~~L~---~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~--~~ 347 (618)
.+.... .. +..+-=+.++ +++.. .+.+.....+.++..+..........-.....-..++.++-++ .+
T Consensus 141 ~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~ 220 (339)
T PF12074_consen 141 KLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSW 220 (339)
T ss_pred cchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCH
Confidence 010000 00 0000000000 22222 2334444555566555533222111000123456677777776 88
Q ss_pred HHHHHHHHHHHHhhcC
Q 007101 348 QLREMSAFALGRLAQD 363 (618)
Q Consensus 348 ~v~~~a~~~L~~l~~~ 363 (618)
.+|..|..++..+...
T Consensus 221 ~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 221 KVRRAALSALKKLYAS 236 (339)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888764
No 350
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.72 E-value=4.9e+02 Score=30.17 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccc
Q 007101 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (618)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~ 422 (618)
++-++.+|..+...|+-.+..- ...+.....+.-+--.|++++..||..++.+|..|....+....+.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~y--P~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~---------- 364 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSY--PEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLE---------- 364 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhc--cHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHH----------
Confidence 4568899999888888876532 2234455556666667899999999999999999987754432221
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHH-hhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCC
Q 007101 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 501 (618)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 501 (618)
.+.+.+=.+++++. ++-+..|+...+..+...... .++...-+..+..++.+.
T Consensus 365 ---------------------lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~-----g~L~d~di~~Vy~Li~d~ 418 (1048)
T KOG2011|consen 365 ---------------------LFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS-----GLLSDKDILIVYSLIYDS 418 (1048)
T ss_pred ---------------------HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc-----cccChhHHHHHHHHHhcc
Confidence 13344556677777 444666666665555444221 123344467888899999
Q ss_pred ChhhhhhHHHHHHHh
Q 007101 502 NPKQQLDGAVALFKL 516 (618)
Q Consensus 502 ~~~v~~~a~~~L~~L 516 (618)
+++++.+|..-|..=
T Consensus 419 ~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 419 NRRVAVAAGEFLYKK 433 (1048)
T ss_pred CcchHHHHHHHHHHH
Confidence 999998888777653
No 351
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=47.17 E-value=2.3e+02 Score=29.83 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=83.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--------ChhHHHHHHHHHHHHhcCCh
Q 007101 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------CSESQREAALLLGQFAATDS 323 (618)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~~~ 323 (618)
..+.+.+...++..+..|+..|..= +.. ..++|.++.++... +..........++.|. .++
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~TD----sGL------~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np 278 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLETD----SGL------QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNP 278 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhccC----ccH------HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCC
Confidence 4455555567777777776665442 221 11466777776532 2333445555666664 445
Q ss_pred hhHHHHHhcCChHHHHHhhC----------CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC--ChhHH
Q 007101 324 DCKVHIVQRGAVRPLIEMLQ----------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQ 391 (618)
Q Consensus 324 ~~~~~l~~~~~~~~L~~lL~----------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~ 391 (618)
.....-.-+.++|.++.++- +.+..+|.-|+..+..++.+......-.....+..+.+.+.+. +....
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhh
Confidence 44443334557777777653 2457799999999999998655544445556666777777553 45556
Q ss_pred HHHHHHHHHhh
Q 007101 392 HNAAFALYGLA 402 (618)
Q Consensus 392 ~~a~~~L~~l~ 402 (618)
..++..|..|-
T Consensus 359 YGai~gL~~lg 369 (576)
T KOG2549|consen 359 YGAIAGLSELG 369 (576)
T ss_pred hhHHHHHHHhh
Confidence 66666666654
No 352
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=46.63 E-value=4.2e+02 Score=29.31 Aligned_cols=138 Identities=15% Similarity=0.112 Sum_probs=89.3
Q ss_pred CCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHH
Q 007101 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (618)
Q Consensus 104 g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~ 182 (618)
..|.-|+.+|.+.+. .+.+.+-..+..+. .+.+. . .+..|+..--....
T Consensus 4 ~~~~~l~~~l~s~~~------------~~~~~~~~~~~~~~~~~~~~---~----l~~~l~~y~~~t~s----------- 53 (668)
T PF04388_consen 4 ASITELLSLLESNDL------------SVLEEIKALLQELLNSDREP---W----LVNGLVDYYLSTNS----------- 53 (668)
T ss_pred ccHHHHHHHhcCCch------------hhHHHHHHHHHHHhhccchH---H----HHHHHHHHHhhcCc-----------
Confidence 456778889988887 66667766666555 22111 1 24445544333332
Q ss_pred HHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhc-CC
Q 007101 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SE 261 (618)
Q Consensus 183 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~ 261 (618)
..++.+|..+- .|..+. .+..|-..+.. +.-|..++..|+.+....+.-.-.+.+..+++.|++.|. +.
T Consensus 54 ~~~~~il~~~~--~P~~K~------~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~ 123 (668)
T PF04388_consen 54 QRALEILVGVQ--EPHDKH------LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT 123 (668)
T ss_pred HHHHHHHHhcC--CccHHH------HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc
Confidence 23555555432 232222 23445555543 467778899999999877888888899999999999887 67
Q ss_pred CHHHHHHHHHHHHHHhcCCh
Q 007101 262 DSAIHYEAVGVIGNLVHSSP 281 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~ 281 (618)
+..+...|+.+|..|.-.-+
T Consensus 124 ~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 124 SITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred cHHHHHHHHHHHHHHhcccc
Confidence 78888889988888865433
No 353
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.55 E-value=97 Score=25.82 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHH
Q 007101 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (618)
Q Consensus 106 v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~ 183 (618)
+..|..-|+++++ .++..|+..|..+. ..+.+...+...+++..|..+++...... .++.
T Consensus 39 ~r~l~krl~~~n~------------~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~------~Vk~ 100 (133)
T smart00288 39 VRLLKKRLNNKNP------------HVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP------LVKK 100 (133)
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH------HHHH
Confidence 4455667777666 89999999999998 35677888888889999999988865531 3788
Q ss_pred HHHHHHHHhhh
Q 007101 184 RAADAITNLAH 194 (618)
Q Consensus 184 ~a~~~L~~L~~ 194 (618)
.++..+..-+.
T Consensus 101 kil~li~~W~~ 111 (133)
T smart00288 101 RILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 354
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.13 E-value=6.8e+02 Score=31.11 Aligned_cols=186 Identities=17% Similarity=0.114 Sum_probs=94.2
Q ss_pred CCcchhHHHHHHHHHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHH------HHHHhhhcC
Q 007101 125 LKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD------AITNLAHEN 196 (618)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~------~L~~L~~~~ 196 (618)
+.|.-..+...+....+.+. .++..+..+.+ .+....+..... .. ..++..+.. ++..++...
T Consensus 793 ~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile-----~~~esi~~sk~~-r~---qsV~~~a~t~~al~s~lk~l~e~~ 863 (2067)
T KOG1822|consen 793 ALPLALSLIDTAVSLFGSVFPHVNNKIRLSILE-----HFPESIKQSKSA-RQ---QSVQVNAVTWQALLSALKYLAEFK 863 (2067)
T ss_pred CCcchhHHHHHHHHHHHHhccCccHHHHHHHHH-----HHHHHhhhhccc-hh---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445577778888888888 55555555443 233333322211 00 033333333 344444322
Q ss_pred ch--hhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHH
Q 007101 197 SS--IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVI 273 (618)
Q Consensus 197 ~~--~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L 273 (618)
-. .-......-.+..++.-+..+++..+..+..++..++...+.. ..+. +..+.+++-+.+. ++-.|.--.-++
T Consensus 864 ~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~a--~~aq~~fdklas~~d~i~R~ghslal 940 (2067)
T KOG1822|consen 864 GATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFVA--SLAQNSFDKLASARDPITRTGHSLAL 940 (2067)
T ss_pred cccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chHH--HHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 21 1111111223455566677788999999999999998632222 2122 2345556555543 443343333344
Q ss_pred HHHhcCChhHHHHHHhcCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhcCC
Q 007101 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATD 322 (618)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~ 322 (618)
+.+-.........-.....+..+..+.+++. +.++..++.++.-+....
T Consensus 941 g~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 941 GCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSS 990 (2067)
T ss_pred HHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCC
Confidence 4442221111000011124556777777664 488999999988887443
No 355
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.96 E-value=38 Score=19.32 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhc
Q 007101 131 EVEKGSAFALGLLA 144 (618)
Q Consensus 131 ~v~~~a~~~L~~l~ 144 (618)
.+|..|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 68999999999885
No 356
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=41.87 E-value=51 Score=27.88 Aligned_cols=44 Identities=41% Similarity=0.465 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 007101 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (618)
Q Consensus 307 ~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~ 361 (618)
....|...|+.+-.+. -+..|+.+|.+.+..+...|+.+|.+..
T Consensus 79 s~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp -HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred CHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 3555666666664321 2677888888888888888888887754
No 357
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=41.62 E-value=55 Score=28.01 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=51.7
Q ss_pred CCCcccEEEEECCeEEehhHHHHhcCCHHHHHhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhCCccccCC
Q 007101 546 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 546 ~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
.+...-|.+.|+|..|..-|.-|+--+.-|-..|.+.-+ ..+..--.+-|=+|.-|-.+|.|+-.|++.++.
T Consensus 17 ~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~ 92 (210)
T KOG2715|consen 17 NGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK 92 (210)
T ss_pred CCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh
Confidence 444467888999999999999998888666555544221 122223334477899999999999999998764
No 358
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=41.40 E-value=3.1e+02 Score=25.82 Aligned_cols=76 Identities=28% Similarity=0.343 Sum_probs=44.1
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCc-c
Q 007101 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHN-Q 367 (618)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~-~ 367 (618)
..++.++++++.++... -..++-....+-...-..+-.|-++.|.+++.++ +.-+|.+|+.+|..++..... |
T Consensus 73 ~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~R 148 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISR 148 (249)
T ss_pred hhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 47889999997654311 1111121111111111122355678888888875 567999999999999875443 4
Q ss_pred hhh
Q 007101 368 AGI 370 (618)
Q Consensus 368 ~~l 370 (618)
..+
T Consensus 149 e~v 151 (249)
T PF06685_consen 149 EEV 151 (249)
T ss_pred HHH
Confidence 444
No 359
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=40.25 E-value=32 Score=35.14 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=49.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 007101 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (618)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (618)
..+-.++...++++++.+..++.+++.+....+..+-+...-..++.++..+.+++-..+..++..+.
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 44445556688999999999999999854433333334455667778888888888888888887774
No 360
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.50 E-value=78 Score=26.64 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=52.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhHHHHHHhcCCHHHHHHhhcCCCh-h---HHHHHHHHHHHHh
Q 007101 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCS-E---SQREAALLLGQFA 319 (618)
Q Consensus 250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~-~---~~~~a~~~L~~l~ 319 (618)
++..|.+-|+++++.++..|+..|-.+..+. +.....+....++..|..++.+... . ++..+...+..-+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4667888888999999999999999998765 3455566667788889988875532 2 6777776665554
No 361
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=38.91 E-value=1.5e+02 Score=29.42 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCC--cHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhH
Q 007101 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (618)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 201 (618)
.+|..|..++..+..++.....+...+ ++..|+++++....- ..+++..|+.+|..++........
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v-----~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKV-----PMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHHhccccHHH
Confidence 566677777777777777777777777 899999999887632 238999999999999986554444
No 362
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=38.46 E-value=61 Score=24.96 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHh
Q 007101 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (618)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (618)
..+.+|+.|+..|..++..-.....-++..++..+.+.+.++..+. ....-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~------~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPL------GTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHH
Confidence 3569999999999999922111111122235667777777665432 5666777777776
No 363
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=38.25 E-value=70 Score=31.87 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhccccchHH-hHHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHH
Q 007101 57 SEVSAQVNVLNTTFSWLEA-DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (618)
Q Consensus 57 ~~v~~l~~~l~~~~~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (618)
..+|.++.++.......-. +-......++.+..|..|+...-..--.-.+|.++..+-...... .++....+.+|+.
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~--~~~~~~h~~LRd~ 287 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS--RPPDDNHWALRDY 287 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC--CCCCchHHHHHHH
Confidence 3556666666655433332 455566667777777776543322222346788887764433211 0112345699999
Q ss_pred HHHHHHHhc--CChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHh
Q 007101 136 SAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (618)
Q Consensus 136 a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L 192 (618)
|+..|..++ .+..+. -+...++..+.+.+.+...+. ....-|+..|..+
T Consensus 288 AA~ll~~i~~~f~~~y~--~l~~ri~~tl~k~l~d~~~~~------~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN--TLQPRITRTLLKALLDPKKPL------TTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHHcCCCCCc------chhhHHHHHHHHh
Confidence 999999999 222211 112223445555555554422 3344455555444
No 364
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=37.97 E-value=3.6e+02 Score=25.63 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=94.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-------ccHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHHh
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKND-------ENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLV 277 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~ 277 (618)
-+.++.-+.++. ....++..|..++.... +.+-.+.-...+|.++.-+.+++ ......++..|..++
T Consensus 66 q~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 66 QPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 344445555443 34456666666664211 11211222234666666666655 234456667788776
Q ss_pred cCChhHHHHHHhcCCHHHHHHhhcCCCh----hHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHH
Q 007101 278 HSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (618)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a 353 (618)
.... .+.+..++........ +....++..|..-.. |+. +...+..|+.+|..+.+.++...
T Consensus 144 ~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 144 EAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHH
Confidence 4321 1233334433333222 222333333333211 222 12357789999999999999999
Q ss_pred HHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHh
Q 007101 354 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (618)
Q Consensus 354 ~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (618)
...|..+...-+.+.. ...+.+.++++++....+. .|+.+|-++
T Consensus 209 L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~ 252 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEI 252 (262)
T ss_pred HHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHH
Confidence 9999999876555443 4455788999999876653 445555444
No 365
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.76 E-value=2.3e+02 Score=32.00 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=54.1
Q ss_pred HHhHHHHHHHHHHHHHhc----cChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc-CChh
Q 007101 74 EADRAAAKRATHVLAELA----KNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE 148 (618)
Q Consensus 74 ~~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~ 148 (618)
+++..+|.+|+..|.... +.+...-.+ -.-..|.++..+...++ -+...|..++.+++ ...+
T Consensus 814 ~e~l~irvkaLdvl~~gl~~La~~~n~LlPl-vhq~W~~vie~~~~k~~------------L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 814 HESLRIRVKALDVLSLGLPLLATYHNLLLPL-VHQTWPSVIECLLCKDP------------LIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred chhHHHHHHHHHHHHhccHHHhccchhHhHH-HHhhhhHHHHHHhcCch------------HHHHHHHHHHHHHHHHhhh
Confidence 346668889988877643 222222122 24567888888888877 88889999999999 4333
Q ss_pred hHHHHHhCCcHHHHHHHHhhcc
Q 007101 149 HQQLIVDNGALSHLVNLLKRHM 170 (618)
Q Consensus 149 ~~~~~~~~g~l~~L~~lL~~~~ 170 (618)
+-..=.-..++|.+-.++.+..
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3222223456777777777654
No 366
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.60 E-value=1.7e+02 Score=24.50 Aligned_cols=142 Identities=22% Similarity=0.184 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhh
Q 007101 348 QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 427 (618)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~ 427 (618)
.++...+.++..++..+-... -...++.+++++.+ ++......+.+|..+...-.. +.+ ..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~---Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~---~~~-~~~~--------- 65 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ---WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD---FRR-SSLS--------- 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT---STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT---SHC-CHSH---------
T ss_pred hHHHHHHHHHHHHHHHHChhh---CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh---hhc-hhhh---------
Confidence 355666677777765321110 12356677777776 466666777777777633211 000 0000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCC----HhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCCh
Q 007101 428 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE----KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 503 (618)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 503 (618)
..-+. .++..-......++..+...+.... ..+...++.++.......+.... ...+.++.+.+++ .++
T Consensus 66 ~~r~~----~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i-~~~~~l~~~~~~l--~~~ 138 (148)
T PF08389_consen 66 QERRR----ELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI-INSNLLNLIFQLL--QSP 138 (148)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH-HSSSHHHHHHHHT--TSC
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh-ccHHHHHHHHHHc--CCH
Confidence 00000 0011111113445666666666653 78899999999998875554443 3567899999999 455
Q ss_pred hhhhhHHHHH
Q 007101 504 KQQLDGAVAL 513 (618)
Q Consensus 504 ~v~~~a~~~L 513 (618)
+.+..|+.+|
T Consensus 139 ~~~~~A~~cl 148 (148)
T PF08389_consen 139 ELREAAAECL 148 (148)
T ss_dssp CCHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6688888775
No 367
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=36.65 E-value=5.1e+02 Score=28.71 Aligned_cols=135 Identities=20% Similarity=0.249 Sum_probs=86.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhHHH
Q 007101 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (618)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (618)
.-|.-|+.++.+.+..+...+-..+..+.....+. -++..|+.. ++..+. .++.+|..+ ..+.. +
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s~----~~~~il~~~--~~P~~-K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNSQ----RALEILVGV--QEPHD-K 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCcH----HHHHHHHhc--CCccH-H
Confidence 45677888888888777777777666655321111 123444443 223322 233444443 12211 1
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 007101 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 286 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 362 (618)
.++..|-..+.. +..|..++..|+.+....+.....+.+..+++.|+.+|.. .+..+...|+.+|..|.-
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 134445555554 5678889999999998878888888899999999998874 677788888888877764
No 368
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=36.47 E-value=58 Score=30.86 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=44.2
Q ss_pred EEEEECCeEEehhHHHHhcCCH-HHHHhhcCCCC---CCCCCceec-CCCCHHHHHHHHHHHhCCccccC
Q 007101 552 VTFLVEGRRFYAHRICLLASSD-AFRAMFDGGYR---EKDARDIEI-PNIRWEVFELMMRFDEFCAFNLS 616 (618)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~~---e~~~~~i~~-~~~~~~~~~~~l~~~Yt~~~~~~ 616 (618)
++..+++..|.+.+.+|.+.-. ..-.||.+++. ....++.++ .+++..+|+.+|+|.-||.+.-+
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCC
Confidence 5566677777777777654432 34567766432 233456666 46999999999999999987654
No 369
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=35.85 E-value=40 Score=21.46 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHH
Q 007101 333 GAVRPLIEMLQSPDVQLREMSAFAL 357 (618)
Q Consensus 333 ~~~~~L~~lL~~~~~~v~~~a~~~L 357 (618)
.+...+...+.++++.||+++..+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4567778889999999999987653
No 370
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.64 E-value=4e+02 Score=25.38 Aligned_cols=69 Identities=20% Similarity=0.141 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhcCCChhhhhhHHHHHHHhhh
Q 007101 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (618)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 518 (618)
...++..++.+|..+-+.+|..++.+|..+....+.+.. ...+.+..|.++++++.-. .|...|-+...
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~v~ 254 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHHHh
Confidence 345677789999999999999999999999766664433 4666899999999875433 45555554443
No 371
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.23 E-value=2.5e+02 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.4
Q ss_pred CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhc--CChhhHHHHHhC
Q 007101 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (618)
Q Consensus 105 ~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~ 156 (618)
++..|..=|++.+. .|+..++++|-.++ .++.++..+...
T Consensus 39 i~d~L~kRL~~~~~------------hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 39 LLEYLLKRLKRSSP------------HVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHhcCCCC------------cchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 35677788887665 89999999999999 667777777654
No 372
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=35.19 E-value=4e+02 Score=25.37 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q 007101 245 IVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 245 ~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 279 (618)
+.+.|+...|+.+.++. ..+.....+.++..+..+
T Consensus 174 l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 174 LFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 34567777888877765 333334555555555444
No 373
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=33.67 E-value=4.7e+02 Score=25.66 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHhc--------C---CHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCChh
Q 007101 220 DTKVQRAAAGALRTLAFKNDENKNQIVEC--------N---ALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN 282 (618)
Q Consensus 220 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~---~~~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~ 282 (618)
.-.+|.+|+.++.....++++.+..++.. . ....|+..|- +.|+--.-.|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45788888888888887777777665432 0 1112444433 33444455788888999888888
Q ss_pred HHHHHHhc--C----------CHHHHHHhhcC-----CChhHHHHHHHHHHHHhcCChhhHHHHHhc-CChHHHHHhhCC
Q 007101 283 IKKEVLAA--G----------ALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS 344 (618)
Q Consensus 283 ~~~~~~~~--~----------~l~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~L~~lL~~ 344 (618)
.++.+..- | .++.+..+|.. .++.++..-+..|..-..+++.....++.. ..++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 77665532 1 35566666654 244455555555555556778777777765 578899987542
Q ss_pred ---CCHHHHHHHHHHHHHhhc
Q 007101 345 ---PDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 345 ---~~~~v~~~a~~~L~~l~~ 362 (618)
.+.-++-.++..|+-+-.
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 577788887777777655
No 374
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.00 E-value=87 Score=26.58 Aligned_cols=27 Identities=41% Similarity=0.352 Sum_probs=17.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHh
Q 007101 293 LQPVIGLLSSCCSESQREAALLLGQFA 319 (618)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (618)
+.+|+.+|.+.+.++...|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 678888888777888888888877754
No 375
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=32.53 E-value=1.1e+02 Score=23.55 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHh
Q 007101 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGL 401 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l 401 (618)
+++..+|..|+..|..++........-.+...+..+.+.+.++ +......|+..|..|
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3577899999999999997544433344455666777777654 455667777777776
No 376
>PLN03205 ATR interacting protein; Provisional
Probab=31.97 E-value=5.4e+02 Score=25.88 Aligned_cols=143 Identities=14% Similarity=0.095 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCC---cchhhHhcCCHHHHHHhhcC-CChhHHHHHHHHHHHhhcCCcchhHHHhhcccc-
Q 007101 344 SPDVQLREMSAFALGRLAQDMH---NQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ- 418 (618)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~---~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~- 418 (618)
..+..|+..|...+.-+..... .+..+....+++.+.++|+. .-..|+..++..|.-|...+.-...+. +|.-+
T Consensus 383 ~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFc-Sg~~e~ 461 (652)
T PLN03205 383 RTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFD-SLHEEK 461 (652)
T ss_pred cchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHh-cCCccc
Confidence 4566778888877766654322 24556666677778888865 456788889888887765554443333 11100
Q ss_pred cccc-cchh--hhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC-----CHhHHHHHHHHHHhhcCCCc-cc------c
Q 007101 419 KLQD-GEFI--VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-----EKGVQRRVALALAHLCSPDD-QR------T 483 (618)
Q Consensus 419 ~L~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~-~~------~ 483 (618)
...+ .+.. ...... .-+.++.-|.+.+..+ +.+++..++..|..++.+.. .. .
T Consensus 462 ~~ad~eNd~~~n~st~k------------~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hk 529 (652)
T PLN03205 462 NSSDTENDSEGNFFALE------------AFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHK 529 (652)
T ss_pred cccccccccccccccHH------------HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeeccc
Confidence 0010 0000 001111 1223445566666554 56788889999999876554 22 2
Q ss_pred ceecCCchHHHHHHhc
Q 007101 484 IFIDGGGLELLLGLLG 499 (618)
Q Consensus 484 ~~~~~~~l~~L~~ll~ 499 (618)
...+.+.+..+++++-
T Consensus 530 l~~~~NFLmLILqvLv 545 (652)
T PLN03205 530 LPQDSNFLMLILHLLV 545 (652)
T ss_pred CCCCccHHHHHHHHHH
Confidence 3334566666666654
No 377
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=31.76 E-value=6.1e+02 Score=26.38 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHhcCChH-HHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhH-hcCCHHHHHHhh
Q 007101 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKLL 383 (618)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~-~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~-~~~~l~~L~~ll 383 (618)
..|..++.+|+.+++.-+..... .+.. .|+.+|.++...-|..++-++...+........-. -....+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 45677888888887543221111 1233 68889999888888888888988887543321111 112344566666
Q ss_pred cCC
Q 007101 384 DSK 386 (618)
Q Consensus 384 ~~~ 386 (618)
..+
T Consensus 178 ~~~ 180 (441)
T PF12054_consen 178 ENP 180 (441)
T ss_pred cCC
Confidence 643
No 378
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=30.52 E-value=1.2e+03 Score=29.40 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhhcCchhhH---HHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHH
Q 007101 180 SVIRRAADAITNLAHENSSIKT---RVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (618)
Q Consensus 180 ~~~~~a~~~L~~L~~~~~~~~~---~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 255 (618)
++...|+..|..++..--+... .-.+...+.++..++. +.+.+++...+.++.++...... -+.+ +-+.+.
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS-GWktIF 1226 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS-GWKSMF 1226 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc-CcHHHH
Confidence 6777788888787752221111 1122345667776665 46689999999999999753222 2233 445555
Q ss_pred Hhhc----CCCHHHHHHHHHHHHHHhc
Q 007101 256 LMLR----SEDSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 256 ~ll~----~~~~~v~~~a~~~L~~l~~ 278 (618)
.++. +.++.+...|...+..+..
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 5544 5677888888888877654
No 379
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.68 E-value=80 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=32.7
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHhhcCCcchhHHHh
Q 007101 375 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 413 (618)
Q Consensus 375 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 413 (618)
+++.|++-+.+++++|...|..+|...+........++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578899999999999999999999999977766555544
No 380
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=29.53 E-value=1.3e+02 Score=29.87 Aligned_cols=92 Identities=12% Similarity=0.005 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhhCCHhHHHHHHHHHHhhcCC--CccccceecCCchHHHHHHhc-CCChhhhhhHHHHHHHhhhhhccCC
Q 007101 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKATTLS 524 (618)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~ 524 (618)
.+++.+..-|++.++.|...|+..+..+..+ ...+..+....+...|..++. +.++.|+......+.+.+......
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D- 123 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD- 123 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC-
Confidence 4677788888999999999999999988633 335556667788888999988 688888888777777777643322
Q ss_pred cccCCCCCCCcccchhHhhhcC
Q 007101 525 SVDAAPPSPTPQVYLGDQFVNN 546 (618)
Q Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~ 546 (618)
+.-+++..+...++..
T Consensus 124 ------p~lsLi~~l~~klk~~ 139 (462)
T KOG2199|consen 124 ------PSLSLISALYKKLKEE 139 (462)
T ss_pred ------cchhHHHHHHHHHHHc
Confidence 2334555555555543
No 381
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=29.42 E-value=5e+02 Score=24.75 Aligned_cols=77 Identities=14% Similarity=0.035 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC-CHhHH
Q 007101 387 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQ 465 (618)
Q Consensus 387 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~ 465 (618)
+..+.+.++..+.|+...++....-...+ ......+ .-+......+++.-|+.+..++ .....
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~----------~~~~~~d------~li~~l~~~~v~~lLL~l~s~~~~~~f~ 196 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSD----------EDSSLHD------QLIWALFESGVLDLLLTLASSPQESDFN 196 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccc----------hhHHHHH------HHHHHHHHcCHHHHHHHHHhCccccchh
Confidence 45677888889999876544322111100 0000111 1122234667777788877776 33444
Q ss_pred HHHHHHHHhhcCCC
Q 007101 466 RRVALALAHLCSPD 479 (618)
Q Consensus 466 ~~a~~~L~~l~~~~ 479 (618)
...+.++..+-.+.
T Consensus 197 ~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 197 LLLLEIIYLLFKGQ 210 (266)
T ss_pred hHHHHHHHHHHcCC
Confidence 45666666664443
No 382
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=29.19 E-value=2.3e+02 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCC--CHHHHHHhhcCCCCCccccCCCcchhHHHHHHHHHHHHhcC
Q 007101 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV 145 (618)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~Lv~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~ 145 (618)
++..|+..+..+..++.....+...+ .+.-|+++++.++. . ...+|..|+.+|.-++.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~-v--------~~~i~~~Al~~L~ai~~ 297 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK-V--------PMDIQTAALRALEAISH 297 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC-C--------CHHHHHHHHHHHHHHHh
Confidence 44555555555555777778888877 99999999987653 1 12899999999999993
No 383
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.92 E-value=1.6e+02 Score=22.33 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=43.2
Q ss_pred HhhhhHHHHHHHHhh-CCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhc----CCChhhhhhHHHHH
Q 007101 445 IHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG----STNPKQQLDGAVAL 513 (618)
Q Consensus 445 ~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~L 513 (618)
++..++.++..++.. .+.++|...+.++.++....... +.. |.+.++..+. ++++++...|-.++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~---i~S-GW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN---IKS-GWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH---HHh-ccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 456788888888655 48899999999999997544322 123 5666666654 35566655555444
No 384
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.91 E-value=31 Score=35.27 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=50.3
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 291 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
.....+-.+....++++++++..++++++...+..+..+....+-..++.++..+.+++-+.+..++.-+..
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 344555566667789999999999999985544444333344555667777777888887777777776653
No 385
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=28.87 E-value=8.7e+02 Score=27.27 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=67.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH-
Q 007101 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV- 330 (618)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~- 330 (618)
..+...+.+++.......+.++.+++.-..-.... ...-++.-..-....-..+......+|..++..+++....+.
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 34455555667777777777777774321100000 011111122222222234556677788899877777665555
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 007101 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (618)
Q Consensus 331 ~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~ 362 (618)
+.+....++.++-+++.++..+|...|.....
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 57888999999999999999999999999874
No 386
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.00 E-value=3.4e+02 Score=22.27 Aligned_cols=69 Identities=7% Similarity=0.030 Sum_probs=43.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-chhhHhc--CCHHHHHHhhcC--------CChhHHHHHHHHHHHhh
Q 007101 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHN--GGLVPLLKLLDS--------KNGSLQHNAAFALYGLA 402 (618)
Q Consensus 334 ~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~--~~l~~L~~ll~~--------~~~~v~~~a~~~L~~l~ 402 (618)
++..|.+-|++.++.|+..++.+|..||..... ....... ..|..+.+.-.. ....||..|-.++..|.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 578888889999999999999999999975432 2222222 223333333221 13457777777776654
No 387
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=27.40 E-value=1.2e+02 Score=22.91 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=41.4
Q ss_pred hcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhh----cCCChhHHHHHHHHHH
Q 007101 331 QRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 399 (618)
Q Consensus 331 ~~~~~~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~ 399 (618)
+..++.++..++. ..+.++|+..+.++.++...... -+. .|-+.++..+ .+.+..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~---~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE---NIK-SGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH---HHH-hccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3446777777755 46899999999999999864321 122 2344444444 4456667776666553
No 388
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.36 E-value=2.4e+02 Score=31.90 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=66.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHH
Q 007101 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
.++.....+|.+.+-.+|..++.+|.....- ...+.-.-.-+...+.++..+...++-+...|+.+|.+++..+.+..
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 3455556777788888998888887644210 12221111223467889999999999999999999999988777665
Q ss_pred HHHHhcCCHHHHHHhhcC
Q 007101 285 KEVLAAGALQPVIGLLSS 302 (618)
Q Consensus 285 ~~~~~~~~l~~L~~ll~~ 302 (618)
..=.-..++|.+-.++.+
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 554556678887777654
No 389
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.12 E-value=2.9e+02 Score=22.93 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhhccccchHHh--HHHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhHH
Q 007101 55 LLSEVSAQVNVLNTTFSWLEAD--RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (618)
Q Consensus 55 ~~~~v~~l~~~l~~~~~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~v 132 (618)
+....+.+++.+...+...... ......++.++...... -....+...+.++.+.++|..+ .+
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~~~--------------~~ 140 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW-IPIELIINSNLLNLIFQLLQSP--------------EL 140 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTTSC--------------CC
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcCCH--------------HH
Confidence 3344566666666655433321 56778888888888872 2233466678999999999544 34
Q ss_pred HHHHHHHH
Q 007101 133 EKGSAFAL 140 (618)
Q Consensus 133 ~~~a~~~L 140 (618)
+..|+.+|
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 66777664
No 390
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=9e+02 Score=26.44 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCccccceecCCchHHHHHHhc-CCChhhhhhHHHHHHHhhhhhccCCc
Q 007101 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKATTLSS 525 (618)
Q Consensus 448 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~ 525 (618)
.++..|-.+.++.+.++-.+++.+++-+..+..+..+ .+.+..|...-. +.+.-.-..-+..|..|.++.-...|
T Consensus 675 ~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl---a~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtltl~p 750 (878)
T KOG2005|consen 675 NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL---AQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTLTLSP 750 (878)
T ss_pred hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH---HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCceeccc
Confidence 4566677777777888888888888877655554432 122222222221 22222334455556666665444443
No 391
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=25.83 E-value=8e+02 Score=25.84 Aligned_cols=148 Identities=15% Similarity=0.081 Sum_probs=71.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEV 287 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 287 (618)
+.+|+++ +...+++..++.....=+. ...+...+...-+.|.++.-+.. ..+..-+.-+......-+ +..+.+
T Consensus 200 LsPLMRl--nfGeEvq~lCLeiAvtQaq-SSqsAa~fLg~WlsPpli~sLs~---~tk~~L~~Sl~~wmkhVsedqiQ~F 273 (589)
T PF11229_consen 200 LSPLMRL--NFGEEVQQLCLEIAVTQAQ-SSQSAAMFLGSWLSPPLIHSLSV---NTKKYLFESLSLWMKHVSEDQIQAF 273 (589)
T ss_pred hhHHHhc--cccHHHHHHHHHHHHHhcc-ccccHHHHHHhhcCcchhhhhhH---HHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 3455544 3467888888776655554 45566666666666666665542 334444444444433323 332333
Q ss_pred HhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHhhCC----CCHHHHHHHHHHHHHhh
Q 007101 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQS----PDVQLREMSAFALGRLA 361 (618)
Q Consensus 288 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~~~~L~~lL~~----~~~~v~~~a~~~L~~l~ 361 (618)
++.-++..+-..-.-.+++....++.-|..-. ..+.-...... ......+.++|.+ .+-+.-...+.+|..++
T Consensus 274 ve~l~vq~F~~~~~~~~~~lC~saLqGLsqAM-KlP~P~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMt 352 (589)
T PF11229_consen 274 VENLMVQQFKAASRPSNPELCQSALQGLSQAM-KLPSPAQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMT 352 (589)
T ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcC
Confidence 33222222222222234556656665555532 22332222222 3445556666533 23344445566666665
Q ss_pred cC
Q 007101 362 QD 363 (618)
Q Consensus 362 ~~ 363 (618)
..
T Consensus 353 d~ 354 (589)
T PF11229_consen 353 DT 354 (589)
T ss_pred HH
Confidence 43
No 392
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.54 E-value=1.5e+02 Score=25.78 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=51.9
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhH-h-cCCHHHHHH-hhcCCC--hhHHHHHHHHHHHhhc
Q 007101 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-H-NGGLVPLLK-LLDSKN--GSLQHNAAFALYGLAD 403 (618)
Q Consensus 329 l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~-~-~~~l~~L~~-ll~~~~--~~v~~~a~~~L~~l~~ 403 (618)
++...+.+.++..+.++++.+-..++..+..+...- +..+. + .-.+..++. ++.++. ...+..++.++..++.
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~--~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF--RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 445556777777777777888888888888887532 22111 1 112333333 555443 4678889999999998
Q ss_pred CCcchhHH
Q 007101 404 NEDNVADF 411 (618)
Q Consensus 404 ~~~~~~~l 411 (618)
.+.....+
T Consensus 147 ~p~~l~~l 154 (168)
T PF12783_consen 147 DPQFLVDL 154 (168)
T ss_pred ChhHHHHH
Confidence 87655444
No 393
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.36 E-value=5.5e+02 Score=23.79 Aligned_cols=140 Identities=15% Similarity=0.209 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCCCccccC-CCcchhH-----HHHHHHHHHHHhcCChhhHH
Q 007101 78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRN-LKPFEHE-----VEKGSAFALGLLAVKPEHQQ 151 (618)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~-~~~~~~~-----v~~~a~~~L~~l~~~~~~~~ 151 (618)
.....++..+..+..+++....+...+.++-+.+.|..-++..+... ...++|+ +-..=...|+.++.++.-..
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 34455677788888888888888899999999998876533111111 1122222 23334567888888888888
Q ss_pred HHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCCh-HHHHHhhcCCCHHHHHHHHHH
Q 007101 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI-PPLVELLEFTDTKVQRAAAGA 230 (618)
Q Consensus 152 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i-~~L~~ll~~~~~~v~~~a~~~ 230 (618)
.+-+.+....+.++....+.+ ++... +|.+|-...+ |.. ..|-..|.+++..+|..|...
T Consensus 159 lLe~~~if~~l~~i~~~~~~~-------~l~kl---il~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~ 219 (226)
T PF14666_consen 159 LLERWNIFTMLYHIFSLSSRD-------DLLKL---ILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKH 219 (226)
T ss_pred HHHHCCHHHHHHHHHccCchH-------HHHHH---HHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 888999999999998886431 33333 4444432222 222 234467778889999999999
Q ss_pred HHHhhc
Q 007101 231 LRTLAF 236 (618)
Q Consensus 231 L~~l~~ 236 (618)
|..+..
T Consensus 220 L~~llr 225 (226)
T PF14666_consen 220 LRVLLR 225 (226)
T ss_pred HHHHhc
Confidence 887753
No 394
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.28 E-value=6.8e+02 Score=25.31 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=73.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
+.-++..+++.+..++..|+.-|..+....+..... --..+++.+..+..+.+..+|.....++-.+............
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 566777888899999999999988887643333221 1234567777777888889999988888876443222111111
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 007101 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (618)
Q Consensus 289 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (618)
-.=+++.+...+.+..++++..++..+.-+....
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 1113444555556667888888888887776444
No 395
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.22 E-value=2e+02 Score=23.21 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=31.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
-+++.|+.-|.+++++|...|+.+|...+... .....++
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 35788999999999999999999999998775 4334443
No 396
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=25.19 E-value=3.2e+02 Score=20.98 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=44.3
Q ss_pred CHHHHHHhhcCCC-hhHHHHHHHHHHHhhcCCcchhHHHhhcccccccccchhhhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 007101 375 GLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 453 (618)
Q Consensus 375 ~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 453 (618)
++..|+++-++.+ +++-..+-..+..+....-..++| -.++++......-+.+
T Consensus 8 FL~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF--------------------------~~~Lq~~lns~~qP~l 61 (92)
T smart00549 8 FLTTLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEF--------------------------TSRLQEALNSPLQPYL 61 (92)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHH--------------------------HHHHHHHHcCCCCchh
Confidence 3555666666666 777666666666666544333333 2344555566667778
Q ss_pred HHHHhhCCHhHHHHHHHH
Q 007101 454 LYLMRVAEKGVQRRVALA 471 (618)
Q Consensus 454 ~~ll~~~~~~v~~~a~~~ 471 (618)
+.+|+..-+.+|......
T Consensus 62 vPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 62 IPFLKNSLPLLRRELLHC 79 (92)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 888888887777765543
No 397
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.86 E-value=3.8e+02 Score=27.94 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=74.2
Q ss_pred CHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHH----HHHHHHHHhcC
Q 007101 250 ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE----AALLLGQFAAT 321 (618)
Q Consensus 250 ~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~----a~~~L~~l~~~ 321 (618)
+...|..+|.. -+++++...+.+|.-|-.. ..+....++..+..++..++...|.- ....+.|+-..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk-----~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~ 91 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNK-----NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKK 91 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc-----CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhh
Confidence 44556777763 3688999999998887322 22333456778888888776666543 34455554221
Q ss_pred ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHH
Q 007101 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (618)
Q Consensus 322 ~~~~~~~l~~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (618)
..... .+..+-..+..+|..+++.--.+|+.+++.|-.- ..+.+...+..+...--+.++.|...++..+
T Consensus 92 ~kn~k---lnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr----~iW~d~~tV~i~~~acf~~~~ki~vs~l~Ff 161 (616)
T KOG2229|consen 92 HKNDK---LNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKR----NIWNDSKTVNIITTACFSKVPKILVSGLRFF 161 (616)
T ss_pred cccch---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cccccchhHHHHHHHHhccCcHHHHhhhHHh
Confidence 11111 1111234566788888877556666666665431 1122333344433333344555555544444
No 398
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.57 E-value=1e+03 Score=26.67 Aligned_cols=251 Identities=10% Similarity=0.051 Sum_probs=119.9
Q ss_pred hhhHHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHhcc-ChhhHHHHHhCCCHHHHHHhhcCCCCCccccCCCcchhH
Q 007101 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (618)
Q Consensus 53 ~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~~~~~~~~~ 131 (618)
+...+..+.+...+.+.+... +..+.+...+..|..+.. ..+....+ .+.+-.+++.|..... .++-
T Consensus 563 dsFlp~lenlf~~lfkll~~~-~e~Dtk~~VL~~ls~lI~r~~e~I~P~--~~~ivq~lp~LWe~s~---------~e~l 630 (978)
T KOG1993|consen 563 DSFLPYLENLFVLLFKLLKAV-EECDTKTSVLNLLSTLIERVSEHIAPY--ASTIVQYLPLLWEESE---------EEPL 630 (978)
T ss_pred hhhhhhHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHhhhc---------cCcH
Confidence 444555555555555443222 122345566666666654 22222211 1223334455544332 1237
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHH
Q 007101 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (618)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~ 211 (618)
+|.+.+.+|.++...-..+... -...+-.++.+--+.+.+... -+.+-+...-.......+..-..+. +.+|.
T Consensus 631 Lr~alL~~L~~lV~alg~qS~~-~~~fL~pVIel~~D~~sP~hv----~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~ 703 (978)
T KOG1993|consen 631 LRCALLATLRNLVNALGAQSFE-FYPFLYPVIELSTDPSSPEHV----YLLEDGMELWLTTLMNSQKLTPELL--LLFPH 703 (978)
T ss_pred HHHHHHHHHHHHHHHhccCCcc-chHHHHHHHHHhcCCCCCcee----ehhhhHHHHHHHHHhcccccCHHHH--HHHHH
Confidence 8888888888877221111000 011122333333333222111 2333333322222222333222232 35677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhc-CCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhc
Q 007101 212 LVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (618)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (618)
+...++.....++ .++.++..-.- +++. --.....|+++.+..++.+-..+-....+.++..+...++ .-......
T Consensus 704 l~~~iE~ste~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~~~ 780 (978)
T KOG1993|consen 704 LLYIIEQSTENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLLFS 780 (978)
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhhcc
Confidence 7777765554433 34444433221 1222 1112235778888888887777777777787777766655 23444556
Q ss_pred CCHHHHHHhhc--CCChhHHHHHHHHHHHHhcCChhh
Q 007101 291 GALQPVIGLLS--SCCSESQREAALLLGQFAATDSDC 325 (618)
Q Consensus 291 ~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~ 325 (618)
++++.+..-+- .+.+-+...-+.+++.+.-.+++.
T Consensus 781 ~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~ 817 (978)
T KOG1993|consen 781 PLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSL 817 (978)
T ss_pred hhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHH
Confidence 77776665543 334555555556666665444443
No 399
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.47 E-value=7.1e+02 Score=25.20 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=71.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q 007101 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (618)
Q Consensus 251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~ 330 (618)
+.-|+..+++.+..++..|+..|..+..+.+..... --..+++.+..++.+.+..+|.....++-++....-.......
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 567888889999999999999998886664443221 1233667777777787888888777777775421111111111
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 007101 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (618)
Q Consensus 331 ~~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 363 (618)
-.=+++.+...+.+..+.+|..++..|.-+...
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 111233344445567888888888888887753
No 400
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.01 E-value=4.4e+02 Score=22.21 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=64.4
Q ss_pred CcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC-cccHHHHHhcCCH
Q 007101 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNAL 251 (618)
Q Consensus 174 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~ 251 (618)
...++|+.....+..+.. . ....+ .++..|..-+.. .++.++..|+..|-.+.... ......+...+++
T Consensus 14 l~~~dw~~ileicD~In~--~-~~~~k------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICDIINE--T-EDGPK------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHHHHhC--C-CCcHH------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 334456666666666632 1 11212 345677777764 68889988998888887632 3455667777888
Q ss_pred HH-HHHhhcC---CCHHHHHHHHHHHHHHhcC
Q 007101 252 PT-LILMLRS---EDSAIHYEAVGVIGNLVHS 279 (618)
Q Consensus 252 ~~-L~~ll~~---~~~~v~~~a~~~L~~l~~~ 279 (618)
.. |++++.. .+..|+..++..+...+..
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 87 8898863 3458899999888887543
No 401
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.75 E-value=4.3e+02 Score=27.75 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.8
Q ss_pred hhHHHHHhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhh
Q 007101 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (618)
Q Consensus 148 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 194 (618)
+..+++.+.+.++.|+.+|....+. +++..|+.+|..+..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~-------~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSS-------DVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCH-------HHHHHHHHHHHHHHH
Confidence 3456666789999999999844432 788888888777754
No 402
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=23.67 E-value=6.9e+02 Score=24.36 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=85.6
Q ss_pred HHHHHhCCCHHHHHHhhcCCCCCccc-----cCC------CcchhHHHHHHHHHHHHhcCChhhHHHH------------
Q 007101 97 VNWIVEGGAVPALVKHLQAPPTSEAD-----RNL------KPFEHEVEKGSAFALGLLAVKPEHQQLI------------ 153 (618)
Q Consensus 97 ~~~~~~~g~v~~Lv~lL~~~~~~~~~-----~~~------~~~~~~v~~~a~~~L~~l~~~~~~~~~~------------ 153 (618)
.+.+.+.|.||.|-+++..-...... .+. -..+-.++.+-++.+.++++...+....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 35678899999988877643221100 000 0001247889999999999633222111
Q ss_pred ----------HhCCcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCch--hhHHHHhcCChHHHHHhhcCC--
Q 007101 154 ----------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVELLEFT-- 219 (618)
Q Consensus 154 ----------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~i~~L~~ll~~~-- 219 (618)
-..|.+..++..+.....+. ..+.+.+.++-....+.+. -+..+...|.++.++..+-++
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s------~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~ 155 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDS------SYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGC 155 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCcc
Confidence 13466777777777654433 5667777777777765555 344566778888888876543
Q ss_pred -CHHHHHHHHHHHHHhhcCCcc
Q 007101 220 -DTKVQRAAAGALRTLAFKNDE 240 (618)
Q Consensus 220 -~~~v~~~a~~~L~~l~~~~~~ 240 (618)
+..+.....-.|+.|...+..
T Consensus 156 ~~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 156 MSQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred chHHHHHHHHHHHHHHHCCCHH
Confidence 245777777888888765433
No 403
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=22.75 E-value=2.3e+02 Score=27.55 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=44.7
Q ss_pred eEEehhHHHHhcCCHHHHHhhcCCCCC-CCCCceecC-CCCHHHHHHHHHHHhCCccccCC
Q 007101 559 RRFYAHRICLLASSDAFRAMFDGGYRE-KDARDIEIP-NIRWEVFELMMRFDEFCAFNLSS 617 (618)
Q Consensus 559 ~~~~~h~~il~~~s~~f~~~~~~~~~e-~~~~~i~~~-~~~~~~~~~~l~~~Yt~~~~~~~ 617 (618)
+.|.|.+..|-..=.||+..+.....+ ...++|+|. ..+-.+|+=+++|++.....+++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~ 74 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP 74 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc
Confidence 679999999999999999999652222 233456654 57889999999999987666654
No 404
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=22.73 E-value=3.5e+02 Score=21.58 Aligned_cols=71 Identities=8% Similarity=0.091 Sum_probs=0.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCcccHHHHHhcCCHHHHHHhhcCC------CHHHHHHHHHHHHHHhc
Q 007101 208 GIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVH 278 (618)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~L~~ll~~~------~~~v~~~a~~~L~~l~~ 278 (618)
++..|..-+.+.++.++..|+..|-.+.. +.+.....+.....+..+++..... +..|+..+...+...+.
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHhC
No 405
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.47 E-value=1.1e+03 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhCCCHHHHHHhhcCCCC
Q 007101 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (618)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~ 118 (618)
.+...+-.|..=|..+..+..+...|++..+++.|-+...
T Consensus 350 trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~ 389 (865)
T KOG2152|consen 350 TRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHE 389 (865)
T ss_pred HHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhcccc
Confidence 3333344455545579999999999999999998876654
No 406
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=22.38 E-value=6.9e+02 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=25.5
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 007101 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (618)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 239 (618)
.+...+|.+...|..+-.+..-++...|+.+....+
T Consensus 114 ~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345567888888887766777778888888876443
No 407
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.07 E-value=4.8e+02 Score=21.97 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=53.9
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc--chhhHhcCCHHH-HHHhhcC---CChhHHHHHHHHHHHhhcC
Q 007101 334 AVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVP-LLKLLDS---KNGSLQHNAAFALYGLADN 404 (618)
Q Consensus 334 ~~~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~l~~-L~~ll~~---~~~~v~~~a~~~L~~l~~~ 404 (618)
++..|..-|.. .++.++..|+..|-.+..+... +..+....++.. |++++.. .+..|+..++..+...+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 46677777764 6899999999888888875543 456777788887 8898863 3458999999999988744
No 408
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=21.38 E-value=86 Score=30.41 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHhhCCHhHHHHHHHHHHhhcCCCc---------------cccceecCCchHHHHHHhc
Q 007101 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---------------QRTIFIDGGGLELLLGLLG 499 (618)
Q Consensus 446 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~~~~~~l~~L~~ll~ 499 (618)
+...+..+++-|.+++...+..|+++|..++.+.- +...+.+.|+++.|+.++.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55778889999999999999999999999975431 3456778899999998886
No 409
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=1.6e+03 Score=27.55 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=67.4
Q ss_pred hcCCHHHHHHhhcCCCH---HHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcC
Q 007101 247 ECNALPTLILMLRSEDS---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAAT 321 (618)
Q Consensus 247 ~~~~~~~L~~ll~~~~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~ 321 (618)
+-..+|.+-+.+.+... ..|.+....+.....+.++ .+.....+....++....++ +.+.+.....+|++-...
T Consensus 1538 dlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D-~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~ 1616 (1758)
T KOG1791|consen 1538 DLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPD-YQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKF 1616 (1758)
T ss_pred ccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchh-hhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCC
Confidence 33445656565554332 2566666666665555444 35566677777777777764 344555666677776544
Q ss_pred ChhhHHHHHhcCChHHHHHhhCCC--CHHHHHH-HHHHHHHhhc
Q 007101 322 DSDCKVHIVQRGAVRPLIEMLQSP--DVQLREM-SAFALGRLAQ 362 (618)
Q Consensus 322 ~~~~~~~l~~~~~~~~L~~lL~~~--~~~v~~~-a~~~L~~l~~ 362 (618)
.......+...|+...+..++.++ .+..+.+ ....+.++-.
T Consensus 1617 p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~ 1660 (1758)
T KOG1791|consen 1617 PFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWV 1660 (1758)
T ss_pred cHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHH
Confidence 333344455678888999999874 4444444 4444555443
No 410
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.64 E-value=1.2e+03 Score=26.56 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHhcC-ChhHHHHHHhcCCHHHHHHhhcCCCh
Q 007101 262 DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSCCS 305 (618)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~ 305 (618)
=...|...+..+..+... +....+.+...+++..++.++....+
T Consensus 335 LG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~ 379 (838)
T KOG2073|consen 335 LGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPW 379 (838)
T ss_pred cchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcch
Confidence 345688888888887554 44455667777777777777765443
No 411
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.59 E-value=1.7e+02 Score=26.55 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 007101 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (618)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (618)
.+.+...+.++++-+++.++..+...... ---...+..+...+.+++.-++....|+|..++..+++.....+
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Q ss_pred hcCC--HHHHH
Q 007101 289 AAGA--LQPVI 297 (618)
Q Consensus 289 ~~~~--l~~L~ 297 (618)
.... ++...
T Consensus 195 ~~~~~~~~~~~ 205 (213)
T PF08713_consen 195 QKNSDRLSRWT 205 (213)
T ss_dssp HHS-----HHH
T ss_pred HHCcccCchhH
No 412
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.51 E-value=9.9e+02 Score=25.75 Aligned_cols=142 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHh
Q 007101 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331 (618)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~ 331 (618)
..++.-..+-++.+|..+...|+-....-| ..+....++.+.--.|.+.+..++.....++..+++..+... .+.+
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP---~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d-~ir~ 353 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVP---DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD-AIRR 353 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcch---HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch-HHHH
Q ss_pred --cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCcchhhHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 007101 332 --RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (618)
Q Consensus 332 --~~~~~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (618)
..+-..+++++..+..-||..+...+..+.. ....+...+..+..++-+..++-+......+.++|
T Consensus 354 f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~-----lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 354 FVERFKDRILEFLRTDSDCVRICSIKSLCYLRI-----LGVLSSSEILIVSSCMLDIIPDSRENIVESVESIC 421 (740)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH-----hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHH
No 413
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.23 E-value=3.6e+02 Score=27.01 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=54.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hHHHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHHh
Q 007101 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFA 319 (618)
Q Consensus 249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~ 319 (618)
.++..|.+.|.+.++.|...|+..+..++.... ..+..+....+...|..++. +....+.+....++-+.+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 457788999999999999999999988876533 45667777888888999998 456667666666666654
No 414
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.15 E-value=1.3e+03 Score=26.04 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=72.9
Q ss_pred CcHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHhhhcCchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007101 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (618)
Q Consensus 157 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 236 (618)
+.+|.++..+..+. +....++.++..-..-+...-..-...|+...+..++.+-..+-....+.++..+..
T Consensus 699 ~L~p~l~~~iE~st---------e~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~ 769 (978)
T KOG1993|consen 699 LLFPHLLYIIEQST---------ENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIK 769 (978)
T ss_pred HHHHHHHHHHHhhh---------hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 35777777777765 444556666554433232222222335677888888876555666677788887776
Q ss_pred CCcccHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhcCChhHH
Q 007101 237 KNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLVHSSPNIK 284 (618)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (618)
.++ ........++++.+..-. +.+.|-+...-+..++.++..+++.-
T Consensus 770 t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~ 818 (978)
T KOG1993|consen 770 TNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLF 818 (978)
T ss_pred hhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHH
Confidence 433 444555677888776543 35567777777777777777666543
Done!